Query 001567
Match_columns 1052
No_of_seqs 576 out of 3611
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:01:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2006 WD40 repeat protein [G 100.0 1E-102 3E-107 907.1 37.5 781 228-1045 121-974 (1023)
2 PF07064 RIC1: RIC1; InterPro 100.0 3.9E-66 8.5E-71 549.3 22.6 247 680-937 4-257 (258)
3 KOG0276 Vesicle coat complex C 100.0 2.1E-37 4.5E-42 341.7 39.9 630 66-924 12-690 (794)
4 KOG0271 Notchless-like WD40 re 100.0 5E-37 1.1E-41 321.8 25.8 344 38-479 85-479 (480)
5 KOG0291 WD40-repeat-containing 100.0 2.1E-34 4.6E-39 324.4 45.0 406 22-483 99-552 (893)
6 KOG0271 Notchless-like WD40 re 100.0 7.9E-35 1.7E-39 305.3 24.7 316 20-418 114-479 (480)
7 KOG0272 U4/U6 small nuclear ri 100.0 8.1E-33 1.8E-37 294.5 23.3 275 67-479 175-458 (459)
8 KOG0291 WD40-repeat-containing 100.0 6.9E-29 1.5E-33 280.1 46.5 455 23-571 59-612 (893)
9 KOG0318 WD40 repeat stress pro 100.0 9.5E-28 2.1E-32 261.7 47.2 481 20-611 60-583 (603)
10 KOG0272 U4/U6 small nuclear ri 100.0 9.2E-31 2E-35 278.9 20.7 265 222-527 179-458 (459)
11 KOG0319 WD40-repeat-containing 100.0 7.7E-29 1.7E-33 280.1 36.0 426 21-482 105-620 (775)
12 KOG0319 WD40-repeat-containing 100.0 3.8E-28 8.3E-33 274.5 37.3 422 25-487 68-583 (775)
13 KOG0318 WD40 repeat stress pro 100.0 1.1E-27 2.4E-32 261.2 38.4 375 23-419 194-601 (603)
14 KOG0286 G-protein beta subunit 100.0 1.9E-27 4.1E-32 242.9 27.7 282 66-479 54-343 (343)
15 KOG0279 G protein beta subunit 99.9 1.2E-25 2.5E-30 228.8 29.6 277 204-527 11-311 (315)
16 KOG0263 Transcription initiati 99.9 7.2E-27 1.6E-31 267.5 22.5 238 211-482 369-650 (707)
17 KOG0263 Transcription initiati 99.9 1.6E-26 3.4E-31 264.7 21.6 242 204-470 447-703 (707)
18 KOG0279 G protein beta subunit 99.9 8.3E-25 1.8E-29 222.6 28.8 277 253-571 11-313 (315)
19 KOG0292 Vesicle coat complex C 99.9 3.3E-23 7E-28 237.3 45.0 266 137-482 16-322 (1202)
20 KOG0645 WD40 repeat protein [G 99.9 1.6E-24 3.5E-29 219.5 29.5 278 253-571 10-311 (312)
21 KOG0284 Polyadenylation factor 99.9 4.8E-26 1E-30 241.8 16.9 277 67-480 96-379 (464)
22 KOG0306 WD40-repeat-containing 99.9 4E-23 8.7E-28 233.7 41.1 454 25-529 71-664 (888)
23 KOG0276 Vesicle coat complex C 99.9 1.4E-24 2.9E-29 240.8 27.6 353 131-570 12-379 (794)
24 KOG0286 G-protein beta subunit 99.9 3.2E-24 7E-29 219.3 28.2 278 202-527 49-343 (343)
25 KOG0645 WD40 repeat protein [G 99.9 5E-24 1.1E-28 216.0 28.9 269 206-528 12-310 (312)
26 KOG0306 WD40-repeat-containing 99.9 3.1E-23 6.8E-28 234.6 37.8 308 145-482 337-665 (888)
27 KOG0284 Polyadenylation factor 99.9 2.1E-25 4.6E-30 236.9 18.1 265 224-529 102-380 (464)
28 KOG0273 Beta-transducin family 99.9 7.5E-24 1.6E-28 228.9 29.2 325 66-481 177-523 (524)
29 KOG0273 Beta-transducin family 99.9 1.2E-23 2.6E-28 227.4 26.2 316 22-420 181-523 (524)
30 KOG0281 Beta-TrCP (transducin 99.9 8E-25 1.7E-29 227.3 14.7 256 227-529 204-477 (499)
31 KOG0281 Beta-TrCP (transducin 99.9 9.6E-25 2.1E-29 226.7 14.7 271 133-483 198-479 (499)
32 KOG0266 WD40 repeat-containing 99.9 2.9E-23 6.3E-28 244.9 29.0 268 137-481 166-454 (456)
33 KOG1408 WD40 repeat protein [F 99.9 5.5E-22 1.2E-26 222.3 36.2 325 223-572 329-714 (1080)
34 KOG0266 WD40 repeat-containing 99.9 5E-23 1.1E-27 242.9 29.2 268 223-528 164-453 (456)
35 KOG0295 WD40 repeat-containing 99.9 7.4E-24 1.6E-28 222.5 18.7 253 224-512 114-394 (406)
36 KOG0315 G-protein beta subunit 99.9 1.5E-22 3.3E-27 202.6 26.9 278 32-398 11-305 (311)
37 KOG0285 Pleiotropic regulator 99.9 6E-23 1.3E-27 214.6 24.0 274 254-569 148-437 (460)
38 KOG0315 G-protein beta subunit 99.9 5.9E-23 1.3E-27 205.6 23.0 225 226-484 48-291 (311)
39 PLN00181 protein SPA1-RELATED; 99.9 8E-22 1.7E-26 249.7 35.5 229 228-480 543-792 (793)
40 cd00200 WD40 WD40 domain, foun 99.9 1.7E-21 3.6E-26 213.3 32.6 275 66-479 8-289 (289)
41 KOG0296 Angio-associated migra 99.9 1.1E-21 2.5E-26 206.4 29.3 317 66-481 63-398 (399)
42 KOG0295 WD40 repeat-containing 99.9 1.7E-22 3.7E-27 212.4 22.8 237 204-480 146-405 (406)
43 KOG0285 Pleiotropic regulator 99.9 1.9E-22 4E-27 211.0 22.8 273 206-529 149-439 (460)
44 KOG0265 U5 snRNP-specific prot 99.9 5.1E-22 1.1E-26 204.2 24.3 226 206-476 88-332 (338)
45 PLN00181 protein SPA1-RELATED; 99.9 2.8E-21 6E-26 244.7 34.1 272 222-527 487-791 (793)
46 KOG0293 WD40 repeat-containing 99.9 4.9E-22 1.1E-26 211.2 20.9 223 224-481 275-513 (519)
47 KOG0293 WD40 repeat-containing 99.9 6.2E-22 1.4E-26 210.4 21.6 273 25-381 230-513 (519)
48 KOG0278 Serine/threonine kinas 99.9 1.1E-22 2.4E-27 203.4 14.8 235 205-484 56-300 (334)
49 KOG0313 Microtubule binding pr 99.9 3.6E-21 7.7E-26 203.5 25.5 266 134-480 107-417 (423)
50 cd00200 WD40 WD40 domain, foun 99.9 2.8E-20 6E-25 203.6 33.3 269 206-527 7-289 (289)
51 KOG0275 Conserved WD40 repeat- 99.9 1.6E-22 3.4E-27 208.3 12.6 265 222-526 217-506 (508)
52 KOG1408 WD40 repeat protein [F 99.9 2.1E-20 4.5E-25 209.7 30.4 413 22-482 168-714 (1080)
53 KOG0265 U5 snRNP-specific prot 99.9 9.6E-21 2.1E-25 194.9 25.2 271 254-567 44-334 (338)
54 KOG0296 Angio-associated migra 99.9 5.7E-20 1.2E-24 193.7 30.0 311 222-570 68-397 (399)
55 KOG0316 Conserved WD40 repeat- 99.9 1.8E-20 3.9E-25 186.4 23.7 253 254-550 14-275 (307)
56 KOG0292 Vesicle coat complex C 99.9 3.1E-20 6.6E-25 213.2 28.0 251 257-529 9-280 (1202)
57 KOG0640 mRNA cleavage stimulat 99.9 9.2E-21 2E-25 194.8 19.4 238 204-480 168-425 (430)
58 KOG0277 Peroxisomal targeting 99.9 5.3E-20 1.2E-24 185.1 21.2 200 204-480 100-308 (311)
59 KOG0313 Microtubule binding pr 99.9 6.7E-20 1.5E-24 193.9 22.7 259 230-528 115-417 (423)
60 KOG0282 mRNA splicing factor [ 99.9 3.5E-21 7.6E-26 209.4 13.4 255 253-527 210-503 (503)
61 PTZ00421 coronin; Provisional 99.8 1.9E-19 4E-24 212.0 28.5 200 253-484 71-293 (493)
62 KOG2048 WD40 repeat protein [G 99.8 3.1E-17 6.7E-22 185.3 44.6 407 21-512 27-536 (691)
63 KOG1407 WD40 repeat protein [F 99.8 2.2E-19 4.8E-24 181.4 24.0 257 206-512 18-288 (313)
64 KOG0643 Translation initiation 99.8 4.1E-19 8.8E-24 180.0 24.7 252 204-480 6-316 (327)
65 KOG0274 Cdc4 and related F-box 99.8 2.1E-19 4.6E-24 211.7 25.9 266 134-485 210-486 (537)
66 KOG2096 WD40 repeat protein [G 99.8 3.5E-19 7.6E-24 184.1 23.7 284 23-373 90-392 (420)
67 KOG0275 Conserved WD40 repeat- 99.8 1.4E-20 3E-25 194.0 13.1 283 255-569 211-507 (508)
68 KOG0305 Anaphase promoting com 99.8 6.3E-19 1.4E-23 200.1 26.7 260 31-422 188-463 (484)
69 KOG0283 WD40 repeat-containing 99.8 3.4E-19 7.4E-24 206.7 24.8 202 204-482 365-577 (712)
70 KOG0641 WD40 repeat protein [G 99.8 9.4E-18 2E-22 165.6 28.8 242 23-339 36-305 (350)
71 KOG0316 Conserved WD40 repeat- 99.8 5.9E-19 1.3E-23 175.7 19.6 234 205-484 14-260 (307)
72 KOG1407 WD40 repeat protein [F 99.8 1.8E-18 3.9E-23 174.9 23.3 256 22-362 23-284 (313)
73 KOG2096 WD40 repeat protein [G 99.8 2.8E-18 6.1E-23 177.5 25.0 320 42-476 63-397 (420)
74 KOG0282 mRNA splicing factor [ 99.8 2.8E-19 6.1E-24 194.7 17.9 256 24-362 219-486 (503)
75 KOG0772 Uncharacterized conser 99.8 1.3E-18 2.8E-23 190.1 22.6 283 70-417 170-484 (641)
76 PTZ00420 coronin; Provisional 99.8 9.1E-18 2E-22 198.5 31.6 216 238-484 52-296 (568)
77 KOG0973 Histone transcription 99.8 2.1E-18 4.6E-23 204.7 25.9 225 225-483 76-357 (942)
78 KOG1063 RNA polymerase II elon 99.8 6.4E-17 1.4E-21 182.8 36.1 458 31-571 25-648 (764)
79 KOG0305 Anaphase promoting com 99.8 1.4E-18 3E-23 197.4 23.0 229 219-482 218-462 (484)
80 KOG1274 WD40 repeat protein [G 99.8 4.1E-18 8.9E-23 198.1 27.2 212 66-346 12-227 (933)
81 KOG0973 Histone transcription 99.8 2.1E-18 4.5E-23 204.9 25.2 260 223-514 18-345 (942)
82 KOG2048 WD40 repeat protein [G 99.8 1.5E-16 3.3E-21 179.8 38.5 421 68-571 26-505 (691)
83 KOG0283 WD40 repeat-containing 99.8 8.3E-19 1.8E-23 203.5 20.8 248 255-571 265-576 (712)
84 KOG0288 WD40 repeat protein Ti 99.8 2.6E-19 5.6E-24 191.2 15.1 263 224-526 181-458 (459)
85 KOG1539 WD repeat protein [Gen 99.8 1.3E-16 2.8E-21 183.7 37.7 433 27-569 166-646 (910)
86 KOG0310 Conserved WD40 repeat- 99.8 4.6E-18 1E-22 185.7 24.7 275 64-477 23-304 (487)
87 KOG0274 Cdc4 and related F-box 99.8 4.9E-18 1.1E-22 200.2 26.4 268 254-571 204-482 (537)
88 KOG0277 Peroxisomal targeting 99.8 1.5E-18 3.3E-23 174.7 18.7 235 255-527 58-307 (311)
89 KOG0310 Conserved WD40 repeat- 99.8 4.8E-18 1E-22 185.6 23.1 288 242-571 11-309 (487)
90 KOG0294 WD40 repeat-containing 99.8 8.9E-18 1.9E-22 174.1 23.7 220 228-483 51-283 (362)
91 KOG1539 WD repeat protein [Gen 99.8 3E-16 6.4E-21 180.8 38.6 329 211-571 162-564 (910)
92 PTZ00421 coronin; Provisional 99.8 1.8E-17 4E-22 195.2 29.8 196 205-423 72-293 (493)
93 KOG2106 Uncharacterized conser 99.8 3.2E-16 7E-21 171.1 36.0 421 4-480 184-625 (626)
94 KOG0300 WD40 repeat-containing 99.8 6.6E-18 1.4E-22 174.1 21.1 272 204-510 144-458 (481)
95 KOG0308 Conserved WD40 repeat- 99.8 1E-18 2.2E-23 195.8 16.1 222 228-482 35-286 (735)
96 KOG0643 Translation initiation 99.8 2.8E-17 6.1E-22 166.7 24.7 279 253-571 6-317 (327)
97 KOG0640 mRNA cleavage stimulat 99.8 7.3E-18 1.6E-22 173.7 20.7 282 23-379 116-424 (430)
98 KOG1446 Histone H3 (Lys4) meth 99.8 9.9E-17 2.1E-21 167.4 29.2 277 67-419 14-302 (311)
99 KOG1063 RNA polymerase II elon 99.8 1.3E-16 2.9E-21 180.2 32.4 392 68-529 192-699 (764)
100 KOG0289 mRNA splicing factor [ 99.8 7.2E-17 1.6E-21 173.5 24.7 230 227-488 228-469 (506)
101 KOG0288 WD40 repeat protein Ti 99.8 4.2E-18 9.1E-23 182.1 14.7 216 227-478 228-458 (459)
102 PTZ00420 coronin; Provisional 99.8 2.1E-16 4.5E-21 187.1 30.0 216 205-464 71-318 (568)
103 KOG0299 U3 snoRNP-associated p 99.8 9.5E-17 2.1E-21 174.2 24.5 265 221-512 145-443 (479)
104 KOG0294 WD40 repeat-containing 99.8 7.6E-17 1.6E-21 167.3 21.5 241 254-576 40-286 (362)
105 KOG1446 Histone H3 (Lys4) meth 99.7 1.5E-15 3.3E-20 158.6 30.5 275 22-383 17-305 (311)
106 KOG0641 WD40 repeat protein [G 99.7 1.6E-15 3.5E-20 149.9 27.8 299 69-419 34-348 (350)
107 KOG0289 mRNA splicing factor [ 99.7 1.6E-16 3.4E-21 170.9 22.5 216 261-512 224-450 (506)
108 KOG0647 mRNA export protein (c 99.7 5.2E-16 1.1E-20 160.3 24.7 239 256-529 26-281 (347)
109 KOG0639 Transducin-like enhanc 99.7 6.6E-17 1.4E-21 175.8 18.9 229 205-480 462-703 (705)
110 KOG1332 Vesicle coat complex C 99.7 1.4E-16 3.1E-21 159.8 19.3 236 229-490 22-296 (299)
111 KOG0301 Phospholipase A2-activ 99.7 1.6E-16 3.4E-21 179.8 21.3 246 228-529 23-288 (745)
112 KOG2919 Guanine nucleotide-bin 99.7 1.9E-16 4E-21 164.6 20.1 219 228-472 121-360 (406)
113 KOG0299 U3 snoRNP-associated p 99.7 1.5E-16 3.2E-21 172.7 19.6 273 254-559 139-443 (479)
114 KOG0268 Sof1-like rRNA process 99.7 6.6E-17 1.4E-21 170.3 15.5 250 254-529 63-345 (433)
115 KOG0647 mRNA export protein (c 99.7 7.7E-16 1.7E-20 159.1 22.6 255 225-510 34-309 (347)
116 KOG0308 Conserved WD40 repeat- 99.7 7.4E-17 1.6E-21 181.1 16.3 230 226-480 81-326 (735)
117 KOG0301 Phospholipase A2-activ 99.7 4.7E-16 1E-20 176.1 22.7 213 228-485 69-292 (745)
118 KOG0639 Transducin-like enhanc 99.7 1.5E-16 3.3E-21 173.0 16.7 264 25-373 425-693 (705)
119 KOG0300 WD40 repeat-containing 99.7 6.5E-16 1.4E-20 159.5 20.2 236 253-529 144-428 (481)
120 KOG0264 Nucleosome remodeling 99.7 5.9E-16 1.3E-20 168.4 21.0 270 64-420 121-404 (422)
121 KOG1273 WD40 repeat protein [G 99.7 1E-15 2.3E-20 158.5 21.5 238 255-529 22-280 (405)
122 KOG0772 Uncharacterized conser 99.7 7.2E-16 1.6E-20 168.8 20.3 285 254-568 164-484 (641)
123 KOG0267 Microtubule severing p 99.7 2.6E-17 5.6E-22 186.6 9.2 214 227-474 37-260 (825)
124 KOG1332 Vesicle coat complex C 99.7 1E-15 2.2E-20 153.7 19.4 241 29-338 21-287 (299)
125 KOG2106 Uncharacterized conser 99.7 1E-13 2.2E-18 151.8 35.8 403 23-482 158-582 (626)
126 KOG0278 Serine/threonine kinas 99.7 2.7E-16 5.8E-21 158.0 13.6 277 204-529 10-297 (334)
127 KOG0269 WD40 repeat-containing 99.7 1.1E-15 2.4E-20 174.9 19.8 276 68-416 40-336 (839)
128 KOG4283 Transcription-coupled 99.7 6.4E-15 1.4E-19 151.3 22.7 231 254-492 40-289 (397)
129 KOG2055 WD40 repeat protein [G 99.7 4.3E-15 9.3E-20 161.3 22.6 275 22-380 216-511 (514)
130 KOG0264 Nucleosome remodeling 99.7 1.5E-14 3.2E-19 157.7 25.7 199 232-484 192-407 (422)
131 KOG0646 WD40 repeat protein [G 99.7 8.7E-15 1.9E-19 159.5 22.4 235 231-484 51-310 (476)
132 KOG0646 WD40 repeat protein [G 99.7 1.5E-15 3.4E-20 165.2 16.3 264 32-361 51-330 (476)
133 KOG0268 Sof1-like rRNA process 99.7 9.2E-16 2E-20 161.7 14.0 270 68-381 67-345 (433)
134 KOG0267 Microtubule severing p 99.7 1.6E-16 3.4E-21 180.3 8.5 235 237-511 11-253 (825)
135 KOG1274 WD40 repeat protein [G 99.7 2.3E-14 5E-19 167.3 26.4 254 22-362 16-282 (933)
136 KOG1036 Mitotic spindle checkp 99.6 4.7E-14 1E-18 146.8 25.8 270 68-472 14-294 (323)
137 KOG0269 WD40 repeat-containing 99.6 2.7E-15 5.9E-20 171.7 17.2 254 24-358 44-317 (839)
138 KOG2055 WD40 repeat protein [G 99.6 2.8E-14 6.2E-19 155.0 24.0 273 134-481 215-512 (514)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 2.5E-13 5.4E-18 151.6 32.6 272 32-390 2-288 (300)
140 KOG0650 WD40 repeat nucleolar 99.6 2.3E-14 5E-19 159.6 21.6 284 254-602 397-716 (733)
141 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 4E-13 8.7E-18 149.9 30.2 224 224-484 36-282 (300)
142 KOG1036 Mitotic spindle checkp 99.6 1.9E-13 4.1E-18 142.3 25.0 262 25-373 19-293 (323)
143 KOG4283 Transcription-coupled 99.6 1.3E-13 2.9E-18 141.8 21.2 289 133-480 44-364 (397)
144 KOG1034 Transcriptional repres 99.6 2.6E-13 5.6E-18 142.0 22.3 220 232-481 107-383 (385)
145 KOG2445 Nuclear pore complex c 99.6 3.3E-13 7.2E-18 140.1 21.7 246 225-481 20-318 (361)
146 KOG1273 WD40 repeat protein [G 99.6 9.5E-13 2.1E-17 136.8 24.9 152 261-424 158-326 (405)
147 KOG2445 Nuclear pore complex c 99.6 9.6E-13 2.1E-17 136.7 23.9 273 68-424 14-322 (361)
148 KOG0302 Ribosome Assembly prot 99.5 1.3E-13 2.9E-18 146.3 16.3 119 203-338 252-379 (440)
149 KOG1524 WD40 repeat-containing 99.5 1E-12 2.2E-17 144.7 21.9 219 71-362 18-239 (737)
150 KOG1538 Uncharacterized conser 99.5 5E-13 1.1E-17 149.9 17.7 264 258-571 13-293 (1081)
151 KOG0650 WD40 repeat nucleolar 99.5 1.4E-12 3E-17 145.7 20.9 312 21-478 400-732 (733)
152 KOG4378 Nuclear protein COP1 [ 99.5 1.5E-12 3.2E-17 142.3 20.1 214 258-506 81-303 (673)
153 KOG0303 Actin-binding protein 99.5 1.5E-12 3.3E-17 139.1 19.4 211 301-571 75-294 (472)
154 KOG0270 WD40 repeat-containing 99.5 6.8E-13 1.5E-17 144.0 16.9 218 229-483 191-451 (463)
155 COG2319 FOG: WD40 repeat [Gene 99.5 4.4E-10 9.5E-15 129.7 41.7 353 23-482 69-443 (466)
156 KOG4328 WD40 protein [Function 99.5 3.8E-12 8.2E-17 138.6 21.5 275 67-417 186-492 (498)
157 KOG1538 Uncharacterized conser 99.5 1.4E-12 3.1E-17 146.4 18.5 266 136-482 18-294 (1081)
158 KOG4328 WD40 protein [Function 99.5 2E-12 4.4E-17 140.7 19.1 276 255-568 184-492 (498)
159 KOG0302 Ribosome Assembly prot 99.5 3.8E-12 8.3E-17 135.4 20.1 134 218-362 211-359 (440)
160 KOG1445 Tumor-specific antigen 99.4 1.1E-12 2.3E-17 146.7 15.6 236 266-572 589-843 (1012)
161 KOG0321 WD40 repeat-containing 99.4 4.2E-12 9.2E-17 143.1 19.9 248 204-483 96-393 (720)
162 KOG0649 WD40 repeat protein [G 99.4 2.8E-11 6.1E-16 121.9 23.3 258 67-382 10-275 (325)
163 KOG0771 Prolactin regulatory e 99.4 2.9E-12 6.2E-17 139.0 17.4 205 21-338 146-355 (398)
164 KOG1009 Chromatin assembly com 99.4 3E-11 6.5E-16 130.1 24.6 132 227-371 22-182 (434)
165 KOG1034 Transcriptional repres 99.4 1.2E-11 2.6E-16 129.7 18.4 251 205-484 35-340 (385)
166 KOG0307 Vesicle coat complex C 99.4 1E-12 2.2E-17 157.6 11.8 228 232-487 82-333 (1049)
167 KOG0307 Vesicle coat complex C 99.4 2.4E-12 5.2E-17 154.4 14.3 197 205-423 113-330 (1049)
168 KOG1963 WD40 repeat protein [G 99.4 4.1E-10 8.9E-15 132.3 31.4 337 23-483 164-540 (792)
169 KOG1963 WD40 repeat protein [G 99.4 2.5E-09 5.4E-14 125.8 37.4 292 254-572 202-539 (792)
170 KOG0270 WD40 repeat-containing 99.4 1.1E-11 2.4E-16 134.7 16.7 192 267-483 191-406 (463)
171 COG2319 FOG: WD40 repeat [Gene 99.4 1.5E-09 3.2E-14 125.2 35.8 267 225-529 72-359 (466)
172 KOG0644 Uncharacterized conser 99.4 1.6E-12 3.4E-17 149.8 10.2 225 222-480 194-467 (1113)
173 KOG2919 Guanine nucleotide-bin 99.4 4.6E-11 1E-15 124.9 19.6 229 29-329 121-362 (406)
174 KOG4378 Nuclear protein COP1 [ 99.3 7.2E-11 1.6E-15 129.3 21.3 205 228-464 89-305 (673)
175 KOG1007 WD repeat protein TSSC 99.3 1.6E-10 3.5E-15 119.1 22.4 216 256-479 122-358 (370)
176 KOG0321 WD40 repeat-containing 99.3 3.5E-11 7.5E-16 135.8 19.1 270 253-571 96-391 (720)
177 KOG0303 Actin-binding protein 99.3 1.3E-10 2.9E-15 124.4 21.6 198 254-484 78-297 (472)
178 KOG1517 Guanine nucleotide bin 99.3 1.2E-10 2.7E-15 137.6 22.9 292 70-483 1067-1383(1387)
179 PRK01742 tolB translocation pr 99.3 1.2E-10 2.6E-15 137.3 22.8 234 40-362 184-427 (429)
180 KOG0771 Prolactin regulatory e 99.3 1.6E-11 3.5E-16 133.2 13.7 192 260-481 148-354 (398)
181 PF04762 IKI3: IKI3 family; I 99.3 3.8E-06 8.3E-11 106.5 63.3 439 66-566 74-559 (928)
182 KOG1009 Chromatin assembly com 99.3 5.5E-10 1.2E-14 120.5 23.5 78 254-340 120-198 (434)
183 PRK11028 6-phosphogluconolacto 99.3 3.8E-09 8.2E-14 120.4 32.3 235 35-338 7-259 (330)
184 KOG0642 Cell-cycle nuclear pro 99.3 2.7E-11 5.9E-16 135.4 13.9 229 224-484 300-564 (577)
185 KOG1240 Protein kinase contain 99.3 1.2E-09 2.6E-14 131.6 27.1 222 68-347 1049-1283(1431)
186 KOG1007 WD repeat protein TSSC 99.3 3.1E-10 6.8E-15 117.1 19.2 246 29-338 74-362 (370)
187 KOG1188 WD40 repeat protein [G 99.3 1.8E-10 3.9E-15 121.7 17.8 227 229-481 83-346 (376)
188 KOG1517 Guanine nucleotide bin 99.3 5E-10 1.1E-14 132.6 23.3 290 21-380 1066-1380(1387)
189 PRK11028 6-phosphogluconolacto 99.3 5.8E-09 1.2E-13 118.9 31.6 268 233-529 5-304 (330)
190 KOG2394 WD40 protein DMR-N9 [G 99.3 6.3E-11 1.4E-15 131.4 14.5 96 257-362 290-386 (636)
191 KOG4497 Uncharacterized conser 99.3 6.7E-10 1.5E-14 116.4 21.2 359 22-512 11-420 (447)
192 KOG2110 Uncharacterized conser 99.3 5.2E-09 1.1E-13 112.0 28.3 127 242-381 108-248 (391)
193 KOG2111 Uncharacterized conser 99.2 1.6E-09 3.4E-14 113.9 23.6 231 25-339 11-258 (346)
194 PF04053 Coatomer_WDAD: Coatom 99.2 1.5E-10 3.3E-15 134.1 18.1 336 454-927 34-374 (443)
195 KOG1188 WD40 repeat protein [G 99.2 2.7E-10 5.8E-15 120.4 15.3 186 269-484 41-245 (376)
196 KOG1587 Cytoplasmic dynein int 99.2 8.7E-10 1.9E-14 129.7 21.3 263 18-339 241-518 (555)
197 KOG4227 WD40 repeat protein [G 99.2 1.6E-09 3.5E-14 115.5 20.2 246 254-528 53-321 (609)
198 KOG0322 G-protein beta subunit 99.2 5.7E-10 1.2E-14 114.0 15.0 269 22-337 17-323 (323)
199 PRK01742 tolB translocation pr 99.2 1.4E-09 3.1E-14 128.2 21.0 206 223-463 208-426 (429)
200 KOG1524 WD40 repeat-containing 99.1 6.5E-10 1.4E-14 123.0 15.5 168 268-471 75-245 (737)
201 KOG2110 Uncharacterized conser 99.1 4.6E-09 1E-13 112.4 21.4 230 25-339 11-250 (391)
202 KOG0644 Uncharacterized conser 99.1 3.7E-11 8E-16 138.8 6.0 164 253-486 186-351 (1113)
203 KOG0322 G-protein beta subunit 99.1 1.4E-09 3.1E-14 111.1 15.6 161 257-480 150-322 (323)
204 KOG1310 WD40 repeat protein [G 99.1 1.4E-09 3E-14 120.8 14.0 161 305-480 48-230 (758)
205 KOG2394 WD40 protein DMR-N9 [G 99.1 1.2E-08 2.7E-13 113.5 20.7 261 30-340 134-455 (636)
206 KOG1523 Actin-related protein 99.0 1.7E-08 3.7E-13 106.1 20.4 233 258-512 11-266 (361)
207 KOG0649 WD40 repeat protein [G 99.0 5E-08 1.1E-12 98.8 22.8 229 136-419 16-273 (325)
208 KOG1445 Tumor-specific antigen 99.0 2.9E-09 6.3E-14 119.7 15.5 119 203-339 622-752 (1012)
209 KOG1587 Cytoplasmic dynein int 99.0 9.6E-09 2.1E-13 121.0 20.6 240 221-482 245-517 (555)
210 PRK03629 tolB translocation pr 99.0 3E-08 6.5E-13 116.8 24.8 234 40-361 179-428 (429)
211 KOG0642 Cell-cycle nuclear pro 99.0 2.4E-09 5.2E-14 120.1 13.8 240 254-529 291-561 (577)
212 KOG0290 Conserved WD40 repeat- 99.0 6.5E-09 1.4E-13 107.7 15.6 204 64-338 93-319 (364)
213 KOG1240 Protein kinase contain 99.0 2.9E-08 6.4E-13 119.9 23.3 271 205-483 1035-1336(1431)
214 PF08662 eIF2A: Eukaryotic tra 99.0 1.8E-08 3.9E-13 105.0 18.6 112 209-341 60-183 (194)
215 PF08662 eIF2A: Eukaryotic tra 99.0 3.1E-08 6.8E-13 103.2 20.3 98 257-373 59-162 (194)
216 KOG2139 WD40 repeat protein [G 99.0 9.9E-09 2.1E-13 109.3 15.9 187 261-481 103-309 (445)
217 KOG1523 Actin-related protein 99.0 4.7E-08 1E-12 102.9 19.7 235 225-489 17-287 (361)
218 PRK05137 tolB translocation pr 98.9 2.4E-07 5.1E-12 109.7 27.1 196 253-487 197-418 (435)
219 KOG2139 WD40 repeat protein [G 98.9 1.5E-07 3.3E-12 100.5 21.2 171 254-474 193-367 (445)
220 KOG0290 Conserved WD40 repeat- 98.9 3.7E-08 8.1E-13 102.2 16.0 201 255-483 94-320 (364)
221 KOG4227 WD40 repeat protein [G 98.9 8.1E-08 1.7E-12 102.8 18.7 262 203-486 51-392 (609)
222 PRK04922 tolB translocation pr 98.9 1.8E-07 3.9E-12 110.7 23.6 232 41-360 185-432 (433)
223 KOG2321 WD40 repeat protein [G 98.9 2.5E-07 5.5E-12 104.0 22.8 130 257-391 175-312 (703)
224 KOG1272 WD40-repeat-containing 98.9 7.2E-09 1.6E-13 113.6 9.3 215 64-362 127-346 (545)
225 PRK03629 tolB translocation pr 98.8 3.1E-07 6.7E-12 108.2 23.4 207 222-462 202-427 (429)
226 KOG4497 Uncharacterized conser 98.8 2.4E-08 5.3E-13 105.0 12.2 130 221-362 11-145 (447)
227 PRK02889 tolB translocation pr 98.8 3.8E-07 8.2E-12 107.6 23.0 171 224-409 201-389 (427)
228 PF02239 Cytochrom_D1: Cytochr 98.8 1.8E-05 4E-10 90.8 35.7 282 223-530 41-348 (369)
229 PRK04922 tolB translocation pr 98.8 8.1E-07 1.8E-11 105.1 24.5 205 241-483 185-413 (433)
230 KOG1310 WD40 repeat protein [G 98.8 8.9E-08 1.9E-12 106.8 14.4 118 203-338 45-179 (758)
231 PRK02889 tolB translocation pr 98.8 5.9E-07 1.3E-11 105.9 22.3 183 254-474 192-392 (427)
232 PRK05137 tolB translocation pr 98.7 9.4E-07 2E-11 104.7 22.5 147 222-384 205-369 (435)
233 KOG2315 Predicted translation 98.7 6.7E-06 1.4E-10 93.1 27.6 145 257-419 218-389 (566)
234 PF02239 Cytochrom_D1: Cytochr 98.7 4E-06 8.7E-11 96.2 26.6 283 25-389 42-355 (369)
235 KOG1272 WD40-repeat-containing 98.7 2.2E-08 4.7E-13 109.8 7.4 218 222-479 133-360 (545)
236 PF15492 Nbas_N: Neuroblastoma 98.7 3.2E-06 7E-11 88.9 22.1 70 25-98 3-74 (282)
237 PRK04792 tolB translocation pr 98.7 3.7E-06 8.1E-11 99.6 25.2 123 225-360 312-446 (448)
238 KOG4547 WD40 repeat-containing 98.7 3.1E-06 6.8E-11 96.4 22.9 161 229-401 4-192 (541)
239 KOG2111 Uncharacterized conser 98.6 2.7E-05 5.9E-10 82.6 27.6 226 261-528 10-255 (346)
240 TIGR02658 TTQ_MADH_Hv methylam 98.6 1.2E-05 2.7E-10 90.3 26.2 77 261-347 252-340 (352)
241 KOG1912 WD40 repeat protein [G 98.6 3E-05 6.4E-10 90.4 28.9 272 262-572 236-552 (1062)
242 COG5354 Uncharacterized protei 98.6 3.2E-05 6.8E-10 86.7 27.6 171 258-474 224-421 (561)
243 KOG4547 WD40 repeat-containing 98.6 1.1E-06 2.5E-11 99.9 16.7 96 254-361 99-195 (541)
244 KOG1334 WD40 repeat protein [G 98.6 5.1E-07 1.1E-11 99.9 13.4 288 66-421 141-467 (559)
245 KOG0974 WD-repeat protein WDR6 98.6 5E-07 1.1E-11 108.5 14.2 141 226-382 141-289 (967)
246 KOG2321 WD40 repeat protein [G 98.6 4.5E-06 9.8E-11 94.2 20.6 239 255-529 49-302 (703)
247 PRK01029 tolB translocation pr 98.6 8.4E-06 1.8E-10 95.9 24.1 127 224-362 286-426 (428)
248 TIGR02800 propeller_TolB tol-p 98.6 1.1E-05 2.4E-10 95.1 25.2 183 254-474 186-386 (417)
249 PF10282 Lactonase: Lactonase, 98.5 0.00034 7.5E-09 80.1 36.1 261 24-343 41-330 (345)
250 KOG1334 WD40 repeat protein [G 98.5 6.7E-07 1.4E-11 99.0 13.0 292 204-528 138-465 (559)
251 PF10282 Lactonase: Lactonase, 98.5 0.0013 2.9E-08 75.3 40.5 73 261-337 148-222 (345)
252 KOG1354 Serine/threonine prote 98.5 6.2E-06 1.3E-10 87.9 18.4 254 68-348 26-313 (433)
253 KOG2041 WD40 repeat protein [G 98.5 0.00011 2.4E-09 84.8 29.7 218 66-336 13-246 (1189)
254 PF04762 IKI3: IKI3 family; I 98.5 5.5E-05 1.2E-09 96.2 30.6 214 207-487 74-339 (928)
255 KOG3881 Uncharacterized conser 98.5 6.9E-06 1.5E-10 89.1 18.9 143 232-387 163-326 (412)
256 KOG0974 WD-repeat protein WDR6 98.5 1.9E-06 4.1E-11 103.7 15.9 192 73-339 93-290 (967)
257 PRK00178 tolB translocation pr 98.5 2.4E-05 5.3E-10 92.6 25.0 182 254-473 195-394 (430)
258 KOG1409 Uncharacterized conser 98.4 1.2E-05 2.6E-10 85.9 17.5 309 226-571 32-394 (404)
259 TIGR02800 propeller_TolB tol-p 98.4 8.4E-05 1.8E-09 87.6 26.0 207 279-528 171-396 (417)
260 COG2706 3-carboxymuconate cycl 98.3 0.0012 2.5E-08 72.0 31.2 249 257-529 40-321 (346)
261 KOG1354 Serine/threonine prote 98.3 4.1E-05 8.9E-10 81.8 19.7 285 23-339 29-361 (433)
262 PRK01029 tolB translocation pr 98.3 7.2E-05 1.6E-09 88.1 23.3 154 224-389 190-367 (428)
263 PRK00178 tolB translocation pr 98.3 7.4E-05 1.6E-09 88.5 23.0 148 223-386 203-368 (430)
264 PRK04792 tolB translocation pr 98.3 7.2E-05 1.6E-09 88.7 22.7 127 223-362 222-361 (448)
265 KOG0309 Conserved WD40 repeat- 98.3 2E-06 4.3E-11 99.2 8.5 288 64-420 21-339 (1081)
266 KOG2314 Translation initiation 98.3 0.00034 7.4E-09 79.2 25.5 310 21-375 212-558 (698)
267 COG2706 3-carboxymuconate cycl 98.2 0.0044 9.5E-08 67.7 32.5 250 33-337 6-274 (346)
268 KOG2315 Predicted translation 98.2 0.0001 2.3E-09 83.7 20.7 115 206-342 268-395 (566)
269 PF00400 WD40: WD domain, G-be 98.2 3E-06 6.5E-11 63.2 5.7 38 290-335 2-39 (39)
270 KOG3881 Uncharacterized conser 98.1 6.3E-05 1.4E-09 81.8 15.7 105 230-343 216-326 (412)
271 COG4946 Uncharacterized protei 98.1 0.0038 8.3E-08 69.6 29.1 124 228-362 369-500 (668)
272 TIGR02658 TTQ_MADH_Hv methylam 98.1 0.0043 9.4E-08 70.1 30.6 276 40-389 27-338 (352)
273 KOG1064 RAVE (regulator of V-A 98.1 1.4E-05 3.1E-10 100.4 11.5 182 255-482 2206-2399(2439)
274 KOG4532 WD40-like repeat conta 98.0 0.00047 1E-08 71.7 19.5 202 71-341 71-286 (344)
275 KOG4532 WD40-like repeat conta 98.0 0.0003 6.5E-09 73.1 18.0 198 233-488 131-338 (344)
276 KOG0280 Uncharacterized conser 98.0 0.00016 3.6E-09 76.0 16.2 204 70-340 72-287 (339)
277 KOG2314 Translation initiation 98.0 0.0014 2.9E-08 74.5 24.4 302 223-560 215-556 (698)
278 COG4946 Uncharacterized protei 98.0 0.016 3.4E-07 64.9 31.9 145 229-390 331-486 (668)
279 PRK04043 tolB translocation pr 98.0 0.00052 1.1E-08 80.4 22.3 104 225-340 283-403 (419)
280 KOG3914 WD repeat protein WDR4 98.0 4.1E-05 8.8E-10 83.8 11.8 98 240-346 132-232 (390)
281 KOG2041 WD40 repeat protein [G 98.0 0.00027 5.8E-09 81.8 18.7 147 206-362 12-168 (1189)
282 PF15492 Nbas_N: Neuroblastoma 98.0 0.0019 4.1E-08 68.5 23.4 195 261-487 48-269 (282)
283 KOG1409 Uncharacterized conser 97.9 0.00026 5.7E-09 75.9 15.8 79 254-340 194-273 (404)
284 TIGR03300 assembly_YfgL outer 97.9 0.0076 1.7E-07 70.0 28.7 249 267-569 104-377 (377)
285 KOG1064 RAVE (regulator of V-A 97.9 7.5E-05 1.6E-09 94.3 11.9 187 132-390 2208-2407(2439)
286 PLN02919 haloacid dehalogenase 97.8 0.0063 1.4E-07 79.3 29.1 116 224-341 745-892 (1057)
287 PF04841 Vps16_N: Vps16, N-ter 97.8 0.016 3.5E-07 67.8 29.8 247 21-339 30-289 (410)
288 KOG0280 Uncharacterized conser 97.8 0.0016 3.4E-08 68.9 18.3 82 249-338 157-242 (339)
289 PLN02919 haloacid dehalogenase 97.7 0.0064 1.4E-07 79.2 27.5 247 224-484 573-891 (1057)
290 KOG3914 WD repeat protein WDR4 97.7 0.00036 7.8E-09 76.6 13.4 80 305-389 149-231 (390)
291 PRK04043 tolB translocation pr 97.7 0.0056 1.2E-07 71.8 24.4 90 261-362 192-288 (419)
292 PF06433 Me-amine-dh_H: Methyl 97.7 0.013 2.8E-07 64.8 25.3 258 25-349 41-332 (342)
293 PF00400 WD40: WD domain, G-be 97.7 7.9E-05 1.7E-09 55.4 5.1 35 445-479 4-39 (39)
294 COG5354 Uncharacterized protei 97.7 0.013 2.9E-07 66.3 24.4 306 224-571 38-395 (561)
295 KOG1912 WD40 repeat protein [G 97.6 0.002 4.4E-08 75.7 18.2 128 261-400 20-162 (1062)
296 KOG4190 Uncharacterized conser 97.6 0.00035 7.6E-09 78.4 11.2 173 129-347 732-916 (1034)
297 KOG4714 Nucleoporin [Nuclear s 97.6 0.00072 1.6E-08 70.1 12.4 152 306-482 88-255 (319)
298 KOG0309 Conserved WD40 repeat- 97.6 0.00056 1.2E-08 79.6 12.6 95 254-358 111-209 (1081)
299 PF11768 DUF3312: Protein of u 97.5 0.00043 9.3E-09 80.0 10.9 74 256-340 258-332 (545)
300 TIGR03300 assembly_YfgL outer 97.5 0.025 5.4E-07 65.7 25.3 145 269-423 191-341 (377)
301 KOG4190 Uncharacterized conser 97.5 0.00018 4E-09 80.6 6.3 160 305-484 733-909 (1034)
302 KOG4714 Nucleoporin [Nuclear s 97.4 0.0019 4.1E-08 67.1 12.6 76 257-340 179-257 (319)
303 KOG1920 IkappaB kinase complex 97.4 0.041 8.9E-07 68.6 25.8 241 68-339 69-324 (1265)
304 KOG2066 Vacuolar assembly/sort 97.3 0.0045 9.8E-08 73.6 15.9 187 257-528 39-232 (846)
305 KOG4640 Anaphase-promoting com 97.3 0.00077 1.7E-08 78.0 9.2 72 261-342 25-97 (665)
306 KOG1645 RING-finger-containing 97.3 0.016 3.5E-07 63.8 18.4 77 253-339 189-268 (463)
307 KOG2114 Vacuolar assembly/sort 97.3 0.033 7.1E-07 67.0 22.1 137 258-404 126-267 (933)
308 KOG3621 WD40 repeat-containing 97.2 0.02 4.4E-07 67.4 19.8 112 224-338 39-155 (726)
309 PF04841 Vps16_N: Vps16, N-ter 97.2 0.16 3.5E-06 59.5 27.6 70 451-528 215-286 (410)
310 PF04053 Coatomer_WDAD: Coatom 97.2 0.13 2.8E-06 60.5 26.6 108 761-923 298-412 (443)
311 KOG2695 WD40 repeat protein [G 97.2 0.0012 2.7E-08 70.9 8.9 121 257-390 252-385 (425)
312 KOG1920 IkappaB kinase complex 97.2 0.2 4.3E-06 62.9 27.8 272 259-573 71-367 (1265)
313 PF07433 DUF1513: Protein of u 97.1 0.061 1.3E-06 58.9 21.3 94 261-362 9-110 (305)
314 COG5170 CDC55 Serine/threonine 97.1 0.0026 5.6E-08 67.4 10.1 262 66-348 25-321 (460)
315 PF07433 DUF1513: Protein of u 97.0 0.14 2.9E-06 56.3 22.6 60 256-327 215-276 (305)
316 PF08450 SGL: SMP-30/Gluconola 97.0 0.23 5E-06 53.8 24.5 128 224-359 91-233 (246)
317 KOG4640 Anaphase-promoting com 96.8 0.0052 1.1E-07 71.3 9.4 93 209-316 21-114 (665)
318 PRK11138 outer membrane biogen 96.7 0.65 1.4E-05 54.2 26.5 95 463-569 293-392 (394)
319 KOG2066 Vacuolar assembly/sort 96.7 0.011 2.4E-07 70.4 11.3 147 135-347 42-197 (846)
320 smart00320 WD40 WD40 repeats. 96.6 0.0059 1.3E-07 43.4 5.6 30 306-335 11-40 (40)
321 PF14783 BBS2_Mid: Ciliary BBS 96.5 0.061 1.3E-06 49.7 12.9 94 226-332 10-109 (111)
322 KOG1832 HIV-1 Vpr-binding prot 96.4 0.0023 5.1E-08 76.0 4.0 185 254-482 1098-1292(1516)
323 KOG2695 WD40 repeat protein [G 96.4 0.0083 1.8E-07 64.8 7.5 109 227-347 261-386 (425)
324 COG5170 CDC55 Serine/threonine 96.4 0.04 8.8E-07 58.6 12.4 220 258-487 27-315 (460)
325 KOG0882 Cyclophilin-related pe 96.4 0.019 4.1E-07 64.1 10.3 203 228-486 18-236 (558)
326 KOG1897 Damage-specific DNA bi 96.4 4.4 9.6E-05 50.4 35.4 81 67-163 530-616 (1096)
327 PF00930 DPPIV_N: Dipeptidyl p 96.3 1.4 3E-05 50.7 25.9 75 21-97 44-131 (353)
328 PRK11138 outer membrane biogen 96.3 1.1 2.4E-05 52.4 25.3 75 269-345 206-282 (394)
329 KOG2114 Vacuolar assembly/sort 96.1 0.76 1.6E-05 55.9 22.2 115 223-346 130-252 (933)
330 PF13360 PQQ_2: PQQ-like domai 96.1 0.48 1E-05 50.7 19.7 109 266-390 34-149 (238)
331 KOG3617 WD40 and TPR repeat-co 96.0 0.05 1.1E-06 65.0 11.9 68 261-337 64-131 (1416)
332 KOG3621 WD40 repeat-containing 96.0 0.33 7.1E-06 57.7 18.4 114 23-161 37-155 (726)
333 COG0823 TolB Periplasmic compo 95.9 0.13 2.9E-06 60.1 15.1 66 26-99 199-270 (425)
334 PF11768 DUF3312: Protein of u 95.8 0.062 1.3E-06 62.7 11.3 73 21-102 261-334 (545)
335 KOG1275 PAB-dependent poly(A) 95.7 0.13 2.8E-06 62.4 13.5 174 268-479 147-340 (1118)
336 KOG3617 WD40 and TPR repeat-co 95.6 0.052 1.1E-06 64.8 9.7 105 261-381 20-131 (1416)
337 PRK02888 nitrous-oxide reducta 95.6 0.3 6.6E-06 58.5 16.1 104 224-327 326-451 (635)
338 PF00930 DPPIV_N: Dipeptidyl p 95.5 1.8 4E-05 49.7 22.4 54 277-341 22-75 (353)
339 KOG1832 HIV-1 Vpr-binding prot 95.4 0.02 4.3E-07 68.5 5.6 148 305-483 1099-1257(1516)
340 PF08450 SGL: SMP-30/Gluconola 95.4 4.9 0.00011 43.4 28.3 215 229-471 11-244 (246)
341 KOG0882 Cyclophilin-related pe 95.4 0.35 7.6E-06 54.4 14.6 125 222-347 100-241 (558)
342 smart00320 WD40 WD40 repeats. 95.0 0.038 8.2E-07 39.0 4.1 31 254-284 9-40 (40)
343 PF13360 PQQ_2: PQQ-like domai 94.5 4.3 9.4E-05 43.2 20.6 183 227-423 33-233 (238)
344 PF08596 Lgl_C: Lethal giant l 94.5 5.7 0.00012 46.2 22.4 93 70-162 4-117 (395)
345 KOG2079 Vacuolar assembly/sort 94.4 0.097 2.1E-06 64.6 7.8 75 266-348 97-171 (1206)
346 KOG4441 Proteins containing BT 94.3 1.2 2.6E-05 54.4 17.1 68 461-529 473-546 (571)
347 COG3490 Uncharacterized protei 94.3 3.9 8.5E-05 43.9 18.1 212 263-529 120-348 (366)
348 PF06433 Me-amine-dh_H: Methyl 94.3 12 0.00025 42.1 26.3 156 221-390 148-329 (342)
349 KOG1275 PAB-dependent poly(A) 93.9 1.2 2.5E-05 54.6 15.2 92 239-336 245-341 (1118)
350 PF06977 SdiA-regulated: SdiA- 93.9 6.1 0.00013 42.7 19.6 123 210-338 23-148 (248)
351 KOG2079 Vacuolar assembly/sort 93.9 1 2.2E-05 56.1 14.9 69 257-336 130-202 (1206)
352 PF12894 Apc4_WD40: Anaphase-p 93.7 0.17 3.7E-06 39.3 5.2 34 307-340 11-44 (47)
353 PF00780 CNH: CNH domain; Int 93.5 14 0.0003 40.5 25.2 62 266-339 5-66 (275)
354 PRK02888 nitrous-oxide reducta 93.4 1.9 4.2E-05 51.9 15.9 98 316-421 285-405 (635)
355 KOG1008 Uncharacterized conser 93.1 0.052 1.1E-06 63.3 2.4 75 258-339 57-139 (783)
356 PF12894 Apc4_WD40: Anaphase-p 93.0 0.18 3.8E-06 39.2 4.4 29 69-97 13-41 (47)
357 PRK13616 lipoprotein LpqB; Pro 92.9 4.3 9.4E-05 49.7 18.5 107 223-333 354-472 (591)
358 COG3391 Uncharacterized conser 92.6 19 0.00041 41.9 22.7 107 225-342 80-195 (381)
359 KOG2006 WD40 repeat protein [G 92.3 0.16 3.6E-06 62.7 5.2 156 756-934 795-1011(1023)
360 COG0823 TolB Periplasmic compo 92.2 1.1 2.3E-05 52.6 11.7 110 223-340 197-317 (425)
361 PRK13616 lipoprotein LpqB; Pro 92.2 6.7 0.00014 48.1 18.8 91 258-362 350-459 (591)
362 KOG4649 PQQ (pyrrolo-quinoline 91.8 20 0.00044 38.2 25.6 83 267-360 62-145 (354)
363 KOG1645 RING-finger-containing 91.8 4 8.7E-05 45.8 14.4 45 304-348 190-235 (463)
364 PF10647 Gmad1: Lipoprotein Lp 91.4 19 0.00041 39.2 19.7 95 258-362 25-123 (253)
365 PF06977 SdiA-regulated: SdiA- 91.0 26 0.00056 37.9 21.5 210 23-274 25-239 (248)
366 PF14783 BBS2_Mid: Ciliary BBS 90.9 7.8 0.00017 36.0 13.3 62 263-337 9-71 (111)
367 KOG1898 Splicing factor 3b, su 90.7 58 0.0013 41.4 31.6 75 20-99 538-620 (1205)
368 KOG2444 WD40 repeat protein [G 89.4 1.1 2.4E-05 46.6 7.2 100 230-338 70-178 (238)
369 PF08596 Lgl_C: Lethal giant l 89.4 6.5 0.00014 45.7 14.5 78 257-336 86-172 (395)
370 cd00216 PQQ_DH Dehydrogenases 89.3 57 0.0012 39.3 29.5 71 269-346 111-192 (488)
371 PF08553 VID27: VID27 cytoplas 89.3 3.5 7.5E-05 51.6 12.7 93 232-336 544-646 (794)
372 PF15390 DUF4613: Domain of un 87.9 68 0.0015 38.4 23.7 111 25-163 62-187 (671)
373 PF02897 Peptidase_S9_N: Proly 87.7 63 0.0014 37.8 27.2 33 310-342 126-163 (414)
374 PF12657 TFIIIC_delta: Transcr 87.0 2.1 4.6E-05 43.6 7.7 75 22-97 7-121 (173)
375 PF11635 Med16: Mediator compl 86.7 38 0.00082 43.1 20.1 74 258-332 260-345 (753)
376 PF10168 Nup88: Nuclear pore c 86.6 1.4 3E-05 55.0 7.1 75 23-97 88-179 (717)
377 PF03178 CPSF_A: CPSF A subuni 85.8 67 0.0015 36.2 25.1 67 261-334 177-262 (321)
378 KOG1897 Damage-specific DNA bi 85.7 1.1E+02 0.0025 38.7 36.9 80 261-345 588-667 (1096)
379 KOG3630 Nuclear pore complex, 84.5 15 0.00033 46.6 14.2 69 261-338 160-229 (1405)
380 KOG4649 PQQ (pyrrolo-quinoline 84.1 64 0.0014 34.6 28.1 60 225-285 100-164 (354)
381 PF00780 CNH: CNH domain; Int 83.4 74 0.0016 34.7 25.6 62 29-99 5-66 (275)
382 KOG1008 Uncharacterized conser 83.0 0.68 1.5E-05 54.5 2.0 141 222-379 72-223 (783)
383 KOG2280 Vacuolar assembly/sort 81.6 36 0.00078 41.7 15.3 52 278-340 64-115 (829)
384 PF10647 Gmad1: Lipoprotein Lp 81.5 13 0.00029 40.4 11.4 60 261-327 70-131 (253)
385 PF03178 CPSF_A: CPSF A subuni 81.3 75 0.0016 35.8 17.9 177 278-481 2-202 (321)
386 KOG2377 Uncharacterized conser 81.2 1.1E+02 0.0025 35.4 23.8 71 257-337 66-140 (657)
387 COG3204 Uncharacterized protei 80.9 93 0.002 34.2 21.3 176 209-401 86-262 (316)
388 KOG2444 WD40 repeat protein [G 79.8 5.2 0.00011 41.8 6.9 73 268-348 70-143 (238)
389 PF10313 DUF2415: Uncharacteri 79.6 5.1 0.00011 30.4 4.9 31 308-338 1-34 (43)
390 KOG2280 Vacuolar assembly/sort 78.8 1.2E+02 0.0025 37.5 18.3 33 64-97 80-112 (829)
391 PRK13684 Ycf48-like protein; P 78.6 1.2E+02 0.0026 34.4 18.4 118 257-388 172-294 (334)
392 PF08553 VID27: VID27 cytoplas 78.3 28 0.00061 43.8 13.8 88 269-362 543-630 (794)
393 PF02897 Peptidase_S9_N: Proly 77.8 1.5E+02 0.0032 34.7 34.2 57 261-328 128-190 (414)
394 PF10313 DUF2415: Uncharacteri 77.8 6 0.00013 30.0 4.9 30 453-482 1-34 (43)
395 PF10168 Nup88: Nuclear pore c 77.3 38 0.00083 42.5 14.7 81 259-339 86-181 (717)
396 COG3391 Uncharacterized conser 77.2 1.5E+02 0.0032 34.4 18.9 132 224-362 121-264 (381)
397 KOG2377 Uncharacterized conser 76.4 83 0.0018 36.4 15.3 71 25-101 28-100 (657)
398 PF12234 Rav1p_C: RAVE protein 76.4 26 0.00056 42.9 12.5 103 226-336 37-155 (631)
399 COG3490 Uncharacterized protei 76.2 1.2E+02 0.0027 33.0 17.3 65 257-334 279-345 (366)
400 KOG3630 Nuclear pore complex, 75.8 28 0.00062 44.4 12.6 75 453-528 199-281 (1405)
401 PF15390 DUF4613: Domain of un 75.8 27 0.00059 41.6 11.8 68 261-337 117-186 (671)
402 PF14781 BBS2_N: Ciliary BBSom 75.0 84 0.0018 30.4 13.5 114 263-388 5-132 (136)
403 COG3386 Gluconolactonase [Carb 74.8 1.5E+02 0.0033 33.3 18.5 69 261-337 115-193 (307)
404 PHA02713 hypothetical protein; 74.5 73 0.0016 39.1 16.1 28 463-490 512-542 (557)
405 TIGR02604 Piru_Ver_Nterm putat 73.9 77 0.0017 36.5 15.4 66 258-326 73-142 (367)
406 PF07676 PD40: WD40-like Beta 71.0 6.1 0.00013 28.9 3.6 28 67-94 8-38 (39)
407 PF11715 Nup160: Nucleoporin N 70.9 13 0.00028 45.5 8.6 40 307-346 214-257 (547)
408 KOG1916 Nuclear protein, conta 70.8 4 8.6E-05 50.2 3.8 74 138-248 191-265 (1283)
409 PF12234 Rav1p_C: RAVE protein 70.6 94 0.002 38.3 15.3 74 255-336 28-103 (631)
410 KOG2395 Protein involved in va 69.9 20 0.00042 42.0 8.8 91 234-336 398-499 (644)
411 PF07995 GSDH: Glucose / Sorbo 69.7 1.2E+02 0.0027 34.3 15.6 25 367-391 174-201 (331)
412 KOG2395 Protein involved in va 69.7 1.3E+02 0.0029 35.5 15.2 146 313-480 339-499 (644)
413 PLN00033 photosystem II stabil 69.2 1.6E+02 0.0035 34.4 16.4 136 225-372 245-388 (398)
414 KOG4499 Ca2+-binding protein R 69.0 62 0.0013 34.2 11.3 128 226-359 116-262 (310)
415 PHA03098 kelch-like protein; P 68.4 1.4E+02 0.0031 36.3 16.9 28 463-490 487-520 (534)
416 TIGR02604 Piru_Ver_Nterm putat 68.4 1.4E+02 0.003 34.4 15.9 96 257-362 14-135 (367)
417 PF14655 RAB3GAP2_N: Rab3 GTPa 67.8 15 0.00033 42.7 7.6 95 260-359 5-117 (415)
418 KOG1916 Nuclear protein, conta 66.3 1.7 3.7E-05 53.2 -0.4 65 262-336 189-264 (1283)
419 PF12341 DUF3639: Protein of u 65.6 9.2 0.0002 25.9 3.1 24 70-95 4-27 (27)
420 PF07676 PD40: WD40-like Beta 64.7 16 0.00034 26.7 4.7 23 451-473 7-29 (39)
421 PF08728 CRT10: CRT10; InterP 62.9 2.7E+02 0.0058 34.9 17.1 73 258-336 164-245 (717)
422 PRK10115 protease 2; Provision 62.9 4.1E+02 0.0088 33.6 26.8 55 25-88 132-192 (686)
423 PLN00033 photosystem II stabil 61.1 3E+02 0.0066 32.1 16.7 113 261-389 243-363 (398)
424 KOG4460 Nuclear pore complex, 60.6 75 0.0016 37.4 11.0 77 25-101 109-202 (741)
425 COG3386 Gluconolactonase [Carb 58.9 3E+02 0.0066 30.9 19.5 88 232-326 39-129 (307)
426 cd00216 PQQ_DH Dehydrogenases 58.1 4E+02 0.0087 32.0 25.2 75 269-347 62-138 (488)
427 PF14781 BBS2_N: Ciliary BBSom 57.9 1.8E+02 0.004 28.2 11.5 68 267-346 63-134 (136)
428 COG4590 ABC-type uncharacteriz 57.6 67 0.0014 37.0 9.8 30 69-99 222-251 (733)
429 PHA02790 Kelch-like protein; P 57.6 3.3E+02 0.0072 32.7 16.9 27 462-488 445-477 (480)
430 PF10214 Rrn6: RNA polymerase 57.6 2.6E+02 0.0056 35.9 16.7 81 260-341 149-236 (765)
431 KOG4441 Proteins containing BT 57.4 4.2E+02 0.0091 32.6 17.9 68 459-528 423-498 (571)
432 PF07569 Hira: TUP1-like enhan 55.1 48 0.001 35.2 8.2 74 264-339 18-97 (219)
433 PF11134 Phage_stabilise: Phag 54.1 4E+02 0.0087 31.1 15.3 62 257-323 89-150 (469)
434 TIGR03606 non_repeat_PQQ dehyd 54.1 1.5E+02 0.0032 35.2 12.6 100 224-327 35-165 (454)
435 COG3204 Uncharacterized protei 52.3 3.7E+02 0.0079 29.8 18.3 128 254-400 82-210 (316)
436 PF14583 Pectate_lyase22: Olig 52.0 4.3E+02 0.0093 30.5 24.6 25 456-480 354-380 (386)
437 PHA02790 Kelch-like protein; P 51.6 5E+02 0.011 31.1 17.4 64 461-528 405-469 (480)
438 PF07569 Hira: TUP1-like enhan 49.7 65 0.0014 34.2 8.1 73 22-97 13-95 (219)
439 PF07995 GSDH: Glucose / Sorbo 49.3 4.4E+02 0.0095 29.8 29.3 71 256-331 252-329 (331)
440 PF14655 RAB3GAP2_N: Rab3 GTPa 49.2 62 0.0014 37.8 8.4 81 261-346 312-407 (415)
441 KOG4499 Ca2+-binding protein R 48.7 95 0.0021 32.9 8.6 48 261-317 216-263 (310)
442 KOG4460 Nuclear pore complex, 46.3 1.8E+02 0.0039 34.5 11.1 34 309-342 167-203 (741)
443 PHA03098 kelch-like protein; P 45.5 4.1E+02 0.0089 32.2 15.5 68 460-528 434-510 (534)
444 PRK13684 Ycf48-like protein; P 44.2 5.2E+02 0.011 29.3 24.8 48 438-488 247-295 (334)
445 COG5290 IkappaB kinase complex 44.2 1.8E+02 0.0039 36.1 11.0 31 69-99 114-144 (1243)
446 cd07357 HN_L-whirlin_R2_like S 39.0 37 0.00081 29.3 3.3 50 978-1038 4-56 (81)
447 PF14870 PSII_BNR: Photosynthe 38.8 6E+02 0.013 28.4 28.6 119 257-389 144-268 (302)
448 KOG4659 Uncharacterized conser 37.4 1.2E+03 0.026 31.4 19.6 30 71-100 596-626 (1899)
449 PF12657 TFIIIC_delta: Transcr 37.0 1.7E+02 0.0038 29.6 8.7 33 307-339 85-123 (173)
450 PRK10115 protease 2; Provision 36.6 9.8E+02 0.021 30.2 28.7 105 224-336 132-254 (686)
451 TIGR03606 non_repeat_PQQ dehyd 36.5 6.3E+02 0.014 30.0 14.2 63 255-319 28-90 (454)
452 TIGR02276 beta_rpt_yvtn 40-res 35.5 1.4E+02 0.003 21.7 5.9 31 317-347 1-32 (42)
453 PF14761 HPS3_N: Hermansky-Pud 35.5 1.1E+02 0.0023 32.2 6.8 45 275-328 35-80 (215)
454 PF13432 TPR_16: Tetratricopep 35.1 1.3E+02 0.0028 24.4 6.2 60 872-933 5-64 (65)
455 PF11715 Nup160: Nucleoporin N 34.9 1.4E+02 0.003 36.5 9.0 36 261-297 219-258 (547)
456 PF14761 HPS3_N: Hermansky-Pud 34.1 5.9E+02 0.013 26.9 15.6 45 320-370 29-75 (215)
457 PF14727 PHTB1_N: PTHB1 N-term 33.5 5.3E+02 0.012 30.3 12.8 53 518-571 152-204 (418)
458 PF14583 Pectate_lyase22: Olig 33.2 8.2E+02 0.018 28.3 24.8 89 226-323 43-140 (386)
459 PHA02713 hypothetical protein; 32.6 1E+03 0.022 29.2 19.8 64 460-528 460-532 (557)
460 KOG1983 Tomosyn and related SN 32.4 1.3E+03 0.029 30.5 18.1 26 316-341 243-268 (993)
461 KOG1983 Tomosyn and related SN 31.4 5.3E+02 0.012 34.1 13.6 42 447-488 229-271 (993)
462 PF03378 CAS_CSE1: CAS/CSE pro 31.2 2.3E+02 0.0049 33.5 9.5 110 789-929 156-270 (435)
463 KOG1900 Nuclear pore complex, 31.0 2.8E+02 0.0061 36.7 10.6 112 36-162 95-209 (1311)
464 PF01344 Kelch_1: Kelch motif; 30.2 85 0.0018 23.7 4.0 31 459-489 7-44 (47)
465 PF13964 Kelch_6: Kelch motif 30.2 62 0.0013 25.0 3.2 32 459-490 7-45 (50)
466 KOG1062 Vesicle coat complex A 29.9 1.8E+02 0.004 36.2 8.3 135 786-932 213-400 (866)
467 TIGR01063 gyrA DNA gyrase, A s 29.9 1.3E+03 0.029 29.7 22.7 77 210-287 640-719 (800)
468 PF13449 Phytase-like: Esteras 29.2 8.7E+02 0.019 27.3 13.7 65 261-327 89-166 (326)
469 KOG4659 Uncharacterized conser 28.9 1.6E+03 0.034 30.3 20.3 22 304-325 658-679 (1899)
470 PF01417 ENTH: ENTH domain; I 28.8 2.6E+02 0.0056 26.6 7.9 83 826-912 22-121 (125)
471 PF04840 Vps16_C: Vps16, C-ter 28.2 3.4E+02 0.0073 30.7 9.9 60 853-923 220-285 (319)
472 PF14870 PSII_BNR: Photosynthe 27.8 8.9E+02 0.019 27.1 25.0 249 207-488 15-268 (302)
473 PF13418 Kelch_4: Galactose ox 27.2 75 0.0016 24.3 3.2 28 461-488 10-44 (49)
474 PF12768 Rax2: Cortical protei 26.7 6E+02 0.013 28.1 11.2 60 278-347 16-81 (281)
475 TIGR02276 beta_rpt_yvtn 40-res 25.5 2.6E+02 0.0057 20.1 6.2 31 266-297 1-32 (42)
476 PRK05560 DNA gyrase subunit A; 25.5 1.6E+03 0.034 29.1 19.5 239 18-325 545-799 (805)
477 PF14559 TPR_19: Tetratricopep 24.6 1.5E+02 0.0032 24.1 4.9 57 874-932 1-57 (68)
478 PF11090 DUF2833: Protein of u 24.1 62 0.0013 28.6 2.3 32 457-488 2-33 (86)
479 PF05694 SBP56: 56kDa selenium 23.7 1.3E+03 0.027 27.4 17.5 193 267-482 87-343 (461)
480 PF14727 PHTB1_N: PTHB1 N-term 23.4 1.3E+03 0.027 27.3 31.8 279 267-571 36-360 (418)
481 TIGR01063 gyrA DNA gyrase, A s 23.0 1.7E+03 0.037 28.7 22.1 20 78-97 601-620 (800)
482 KOG2247 WD40 repeat-containing 22.8 11 0.00024 43.6 -3.2 71 258-339 36-107 (615)
483 KOG0783 Uncharacterized conser 22.8 1.4E+03 0.031 29.1 13.7 112 224-342 190-316 (1267)
484 PF12768 Rax2: Cortical protei 22.5 6.4E+02 0.014 27.9 10.4 94 475-571 18-121 (281)
485 PF07250 Glyoxal_oxid_N: Glyox 21.0 7.6E+02 0.017 26.7 10.4 118 226-347 74-207 (243)
486 COG4590 ABC-type uncharacteriz 20.9 3.1E+02 0.0066 32.0 7.4 155 350-529 220-386 (733)
487 COG1528 Ftn Ferritin-like prot 20.8 2.1E+02 0.0046 28.7 5.6 68 864-932 80-147 (167)
488 PF07646 Kelch_2: Kelch motif; 20.0 1.5E+02 0.0032 22.8 3.6 31 458-488 6-45 (49)
No 1
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-102 Score=907.15 Aligned_cols=781 Identities=34% Similarity=0.487 Sum_probs=599.8
Q ss_pred eCCcEEEEEecCCceeeeeecccceecCCCCeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCC
Q 001567 228 SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT 307 (1052)
Q Consensus 228 ~dG~~~~~~~~d~~i~~w~~~~~~~~~gh~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~ 307 (1052)
.||+......+....+.-.....+. .--++++|++++..++++|+|+..|.+.+|+..............++ +++
T Consensus 121 sD~q~a~~~~n~~~~~~t~~i~~~~-~l~~DAvc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~----~~t 195 (1023)
T KOG2006|consen 121 SDGQAAQLLLNHQGFKYTESIGAWK-PLGGDAVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDD----TLT 195 (1023)
T ss_pred ccchhhhhhcccccchhhhhhhhhc-cccccceeeeccchhhhheecccccceeehhhhhhccceeeecccCc----ccc
Confidence 7787665555443322211111111 23468889999999999999999999999998763332222222122 255
Q ss_pred CCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeeeeeeEEecCCceEEE
Q 001567 308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYA 387 (1052)
Q Consensus 308 g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~ 387 (1052)
-++..+.|+|+++.+|.++..|...+|+..++..+.+.............|+|.......+-.+......|...+..++.
T Consensus 196 i~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~~~ms~v~~~~~ts~~~~~f~~~~~l~e~~~~s~~~~~q~~e~~~~L~~ 275 (1023)
T KOG2006|consen 196 VPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGNILMLPVKKLELTSKVVLKFNPLIIMKGEPTFSKVGAIQWEEVGIVLFP 275 (1023)
T ss_pred ccccccCcCCccceeeeeecccceEEecccccccccchhhhhccchhhhccCcceeeecccccCccchhhccceeeeeec
Confidence 58899999999999999999999999999999877766654344555666766654444444555577788888777776
Q ss_pred EecCCcccEEEEeccceeeeeccCCceeeeEeeecCceEEEEecCC---cchheeeeeccCcccccCCCcEEEEEEccCC
Q 001567 388 IEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSED---TDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (1052)
Q Consensus 388 ~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~---~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG 464 (1052)
........+..+.....+. ..++........++.++++....+ .+...|.++++|.+|...+|||++++.++||
T Consensus 276 ~~~~~~~~~~~~~s~sc~~---~S~~~~~~~~l~~d~~~l~~~~~~~s~~~~~~w~~~~~P~~y~ssnwpiry~s~~~dg 352 (1023)
T KOG2006|consen 276 HGEQILTISDFKVSKSCLV---ESKTIVCRAQLMGDSHDLVSKATDVSITDIEKWDHLALPLTYTSSNWPIRYVSIDYDG 352 (1023)
T ss_pred ccccccchhheeecccccc---cccceeechhhccchhhhhhhhccccccchhhhheeecccccccccCceeEEeecCCc
Confidence 5433222221111111111 123333333445555554444333 5566899999999999999999999999999
Q ss_pred CEEEEEeCCceEEEEccCCcEEEecCccceeeeEEEE-EEEeCCEEEEEEEecCCCeEEEEEeeCC-CCCCcceeEEeec
Q 001567 465 MFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKG-LLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSL 542 (1052)
Q Consensus 465 ~~lavag~dG~ilwd~~s~~w~~f~~~~~e~~~~v~g-l~W~~~~li~~~~~~~~~~~elrly~~~-~ld~~~~l~~~~~ 542 (1052)
.++|+||..|.++|++.+++||.|+++.||+.+.|+| +.|++++++.||+...+..+++++|+++ ++|+. ..+....
T Consensus 353 ~~lavAgl~gla~y~~~~~~Wk~f~~~sqEq~i~vtg~liW~~~f~v~~~~~~~~~~~~L~fy~~~~~~dn~-~a~k~~~ 431 (1023)
T KOG2006|consen 353 KHLAVAGLHGLARYSLSSKRWKLFGDESQEQNINVTGGLIWWDDFVVHGCVEEGNRTFELYFYPRDYNLDNN-LAHKSAA 431 (1023)
T ss_pred cEEEEeecccceEEEeecceeecCCccchhhceecceeeEEecceEEEEEEeecCceeeeEecccccccchh-hccchhh
Confidence 9999999999999999999999999999999999884 9999999999999999999999999998 67764 3444333
Q ss_pred CCccEEEEeeCCEEEEEEcCCeEEEEEEEEecccCCCCCCceEEEEEEEEeeecccCCCceEEEccCCCccccccCCCCC
Q 001567 543 LAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVS 622 (1052)
Q Consensus 543 ~~~~~~~s~~~~~llv~~~d~~i~l~~~~~~~~~~~~~~~~i~l~~~~~i~~~~~~~hp~~v~~i~~~~~~~~~~~~~~~ 622 (1052)
......+.+.++.+++++.|+.+.+|++..+. ...+.+..+++++++.+++||++|++++.+++++..... +
T Consensus 432 ~~~~~d~v~~~~~livitad~~~~~~~~~~~s------~t~l~~~~~~~~~~~~i~thP~~ivs~t~t~~~l~~i~~--~ 503 (1023)
T KOG2006|consen 432 SAKVSDLVCVDYSLIVITADGKYQHWELWRNS------QTQLDLENVTEVSIVLINTHPACIVSLTVTSPSLANIGN--D 503 (1023)
T ss_pred hhhhhheeeecceeEEEEecceEEEEEeccch------hhccccceeeEEEEEeecCCCcEEEEeeccCccccccCc--c
Confidence 33344466777888899999999999886432 456788889999999999999999999999876321111 1
Q ss_pred CCccccccCCceeEEEeeCCEEEEEecCC-------CceeeeccceeEEEEcCCCCccccCccceeeEEEECCCC-----
Q 001567 623 TSSDMLAREPARCLILRANGELSLLDLDD-------GRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRG----- 690 (1052)
Q Consensus 623 ~~~~~~~~~~~~~~il~~~g~l~~l~~~~-------~~~~~l~~~VE~~w~~~~~~~~~~~~~~~~~~~~~~~~g----- 690 (1052)
..+.+ ..+....+|.+.++.... ..+..++.+||++|++. +.. ...+.+..|+.+|..|
T Consensus 504 ~l~~~------~~~~~~~~n~i~~l~~~~~~~~~~~~~~~~la~~Ve~~~~~s-s~~--~~~~~d~~Wl~~g~~~~~~~~ 574 (1023)
T KOG2006|consen 504 NLQFY------KSITVTFNNLIGRLIINSSLRDGALYQENKLASLVENFWLNS-SFE--DQQVLDLHWLGDGANGCHMKN 574 (1023)
T ss_pred chhHh------hhhhhhhcchhheeehhhhccchhhhhhhhhhhhHHHeecCc-HHh--hhhhhhceeeccCCCcccccc
Confidence 11211 122333445554444322 25678999999999883 222 2245577888999999
Q ss_pred cEEe---------ccC-----CCCCCCCcccccccCcccccccceeeeeeecCCcEEEEEeeeeecccCcC-----ccce
Q 001567 691 MQVW---------YPS-----PGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTE-----FPCF 751 (1052)
Q Consensus 691 ~~vw---------~~~-----~~~~~~~~~~~~~~~~~l~~~~~~yPl~i~~~~~~i~g~~~~~~~~~~~~-----~~~~ 751 (1052)
|+.| ++. .+.+.+..++|.++++|++|++++|||.++++++++.|++|+.....+.. +++.
T Consensus 575 ~~g~~~~l~~~~~~~~g~~~~~~~~~~~~~sF~~k~~ml~f~l~~Ypl~~l~~~~~~~gv~~~~~l~asa~~~~~~~~f~ 654 (1023)
T KOG2006|consen 575 MDGCPNHLCLALWLSEGNVWDLVMDAYRVPSFLSKRIMLPFTLNIYPLVLLKNVNLVLGVEQEDALLASAEIILFTLTFD 654 (1023)
T ss_pred ccCCccccccceeecccchhhcccccccCchhhhhccccccchhhceeeeecccceeeeccchhhhhhhccccccccchH
Confidence 6555 333 34567788999999999999999999999999999999999976554333 3444
Q ss_pred ecCCcceecHHHHHH--HHHHcccHHHHHHHHHHcCCCCCchHHHHHHHHHhhccccccccccccccCCccccchhhhHH
Q 001567 752 EPTPQAQTILHCLLR--HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLE 829 (1052)
Q Consensus 752 ~~~~~~~~~L~~il~--~ll~~~~~~~a~~~a~~~~~l~~f~~~LE~lLh~vle~e~~~~~~~~~~~~i~~~~~~~~ll~ 829 (1052)
-..++|++|+|.+++ |+|+||.++.|+.+|+.|+.+|||+|+||+|||+|||+|+++++| ||+ ++||
T Consensus 655 v~~~~h~~~l~~i~~l~q~lkrnl~~~aLllaq~~a~~p~f~h~le~ll~~Vle~e~ts~~p------~~d-----~~l~ 723 (1023)
T KOG2006|consen 655 VQERLHQIYLHIILHLYQLLKRNLGEDALLLAQECAILPHFTHALELLLHFVLEEEATSSEP------IPD-----KLLP 723 (1023)
T ss_pred HhhhhhhhHHHHHHHHHHHHHhhccHHHHHhHHHHHhcccchHHHHHHHHHHHHHhhcCCCC------ccc-----hhHH
Confidence 456789999999999 999999999999999999999999999999999999999999875 887 7999
Q ss_pred HHHHHHHccchhHHHHhhhcccccccchHHhHhccCChHHHHHHHHhcCcHhHHhhhhhhhhhccCcchhHHHHHHHHHH
Q 001567 830 KTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQA 909 (1052)
Q Consensus 830 ~v~~fi~~~~~~l~ivv~caRKtE~~~W~~lF~~~g~P~~Lf~~cl~~~~l~~aa~yLiv~~~~e~~~~~~~~~~~Ll~~ 909 (1052)
++++||++||+|+++|||||||||.++|++||+++|.|+||||+||++.+++|||+||||+||+|++++++++|++|+++
T Consensus 724 ~i~d~I~eFp~fl~~vv~caRKTe~~lW~~lF~~~G~PkdLfe~Clqt~~~~tAA~~Liilqnle~savs~~~a~~L~q~ 803 (1023)
T KOG2006|consen 724 KIIDFIREFPEFLKTVVNCARKTEAALWPDLFSAVGIPKDLFEECLQTEDLDTAASYLIILQNLEGSAVSVQHALRLLQL 803 (1023)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHhcCCcHHHHHHHhhccchhhhceeeeeeeccccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccHhHHHHHHHHhhhcCcCcccCCC----CCCCCCCcccc---ceecCC-------CCC--------------CCC
Q 001567 910 TLDECLYELAGELVRFLLRSGREYEQAST----DSDKLSPRFLG---YFLFPS-------SYR--------------RPS 961 (1052)
Q Consensus 910 al~~~~w~l~~eL~RFl~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~-------~~~--------------~~~ 961 (1052)
||++++||+|+||+|||++|||+..+.|+ .+.-.+|...+ ++-.+. +.+ +.+
T Consensus 804 aL~~~kwdl~~Elirfl~~i~p~~~~~~~~~~~~~~~~~~s~d~~~~f~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~ 883 (1023)
T KOG2006|consen 804 ALEEKKWDLAKELIRFLRSIGPEKIDLPTKLIATPTLRSPSLDKSLEFIDQRNNVLSEHAILESVHSSMLSIQKNCKRKS 883 (1023)
T ss_pred HHHhhcchhHHHHHHHHHhcCcchhhccchhccCccccCccchhhhHHHHhhccccccccccCCccchhhcccccccccc
Confidence 99999999999999999999999887776 12111222211 110000 000 111
Q ss_pred CCCCCcc-----cc--CCcchhhHHHHHHHHHHhhhcccchhhHHhhhhccCCCchHHhhhcccceeeeccHHHHHHHHh
Q 001567 962 LDKSTSF-----KE--QSPNVASVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVCARLENFASGLELIG 1034 (1052)
Q Consensus 962 ~~~~~~~-----~~--~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~l~~~~ 1034 (1052)
..+..+. +. ...+.++|+.||+|||++||.+..|.|+|+|+++++|++++||.+||.|+|+.++|+.++..+|
T Consensus 884 ~~~g~~~~~~~~~~~~~~~l~~~i~~~l~~ha~~lL~~~~l~dlg~~~~~l~f~l~~~l~~er~~~~~~~~~~~~~~~l~ 963 (1023)
T KOG2006|consen 884 GTKGWNHDKTNLKQTPRDRLALCIDEILARHARVLLLNFLLLDLGCFGADLHFKLVSLLTEERKRAADNDTFKSELSVLH 963 (1023)
T ss_pred CCCCcccchhhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcceeehhhhHHHHHHHhcCchhhhHHHHHH
Confidence 1111110 00 1225568999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccce
Q 001567 1035 QKVSISVNFSQ 1045 (1052)
Q Consensus 1035 ~~~~~~~~~~~ 1045 (1052)
++|-++-++--
T Consensus 964 ~~~~l~l~~~~ 974 (1023)
T KOG2006|consen 964 EDFDLELPLKV 974 (1023)
T ss_pred Hhhccccchhh
Confidence 99999887643
No 2
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=100.00 E-value=3.9e-66 Score=549.31 Aligned_cols=247 Identities=40% Similarity=0.640 Sum_probs=224.2
Q ss_pred eeeEEEECCCCcEEeccCCCC--CCCCcccccccCcccccccceeeeeeecCCcEEEEEeeeeecccCcCccceecCCcc
Q 001567 680 EVSWLDYGYRGMQVWYPSPGV--DPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQA 757 (1052)
Q Consensus 680 ~~~~~~~~~~g~~vw~~~~~~--~~~~~~~~~~~~~~l~~~~~~yPl~i~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~ 757 (1052)
+.+|+.||++||+||+|+.+. .....+.+...+++++ .|+|||+|++++|+++|+++++..+++.+++++++.+++
T Consensus 4 ~~lW~~~g~~~~~vW~~~~~~~~~~~~~~~~~~~~i~l~--~d~yPlsil~~~gii~Gv~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T PF07064_consen 4 DSLWLFCGAQGMKVWLPVFPVSPASSDSHSFLSKRIMLP--SDFYPLSILSEKGIILGVEQDTSQRRSSSFPFFKFEIKT 81 (258)
T ss_pred cceehhcCcccceeecccccccccccccccccccCccCC--ccccceEEEcCCcEEEEEEEEeeccCCcCccceEeecCc
Confidence 445556666999999999876 2334444555555555 999999999999999999999988888999999999999
Q ss_pred eecHHHHHHHHHHcccHHHHHHHHHHcCCCCCchHHHHHHHHHhhccccccccccccccCCccccchhhhHHHHHHHHHc
Q 001567 758 QTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRN 837 (1052)
Q Consensus 758 ~~~L~~il~~ll~~~~~~~a~~~a~~~~~l~~f~~~LE~lLh~vle~e~~~~~~~~~~~~i~~~~~~~~ll~~v~~fi~~ 837 (1052)
|+|||+|||++|++|++.+|++|+++|+++|||+||||+|||+|||+|++++.++ +++ +++|++|++||++
T Consensus 82 ~l~L~~iL~~lL~~~~~~~a~~i~~~y~~l~~F~~~LE~LLh~vL~~e~~~~~~~----~~~-----~~~L~~v~~ll~~ 152 (258)
T PF07064_consen 82 QLFLHHILRHLLRRNLDEEALEIASKYRSLPYFSHALELLLHTVLEEEADSSEDS----PIP-----DALLPRVISLLQE 152 (258)
T ss_pred eechHHHHHHHHhcCCcHHHHHHHHHhccCCCcHHHHHHHHHHHHhhcccccccc----cch-----HHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999865321 123 3899999999999
Q ss_pred cchhHHHHhhhcccccccchHHhHhccCChHHHHHHHHhcCcHhHHhhhhhhhhhccCcch-----hHHHHHHHHHHHHh
Q 001567 838 FPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAV-----SQYSALRLLQATLD 912 (1052)
Q Consensus 838 ~~~~l~ivv~caRKtE~~~W~~lF~~~g~P~~Lf~~cl~~~~l~~aa~yLiv~~~~e~~~~-----~~~~~~~Ll~~al~ 912 (1052)
||+|++||||||||||+++|++||+++|+|+|||++||++|+++|||+||||+||+|+.+. ++++|++||++|++
T Consensus 153 f~~~l~Ivv~C~RKtE~~~W~~LF~~lg~P~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~ 232 (258)
T PF07064_consen 153 FPEYLEIVVNCARKTEVRYWPYLFDYLGSPRDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALE 232 (258)
T ss_pred CcchHHHHHHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cccHhHHHHHHHHhhhcCcCcccCC
Q 001567 913 ECLYELAGELVRFLLRSGREYEQAS 937 (1052)
Q Consensus 913 ~~~w~l~~eL~RFl~~~~~~~~~~~ 937 (1052)
+++||||+||+|||+++|+++.+++
T Consensus 233 ~~~w~Lc~eL~RFL~~ld~~~~~l~ 257 (258)
T PF07064_consen 233 SGDWDLCFELVRFLKALDPEGNTLP 257 (258)
T ss_pred cccHHHHHHHHHHHHHhCcccCcCC
Confidence 9999999999999999999988664
No 3
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-37 Score=341.66 Aligned_cols=630 Identities=16% Similarity=0.168 Sum_probs=424.8
Q ss_pred hcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEE--EEeecCC
Q 001567 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNK 143 (1052)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~d~~ 143 (1052)
+...+.+|-|.|--..+..+-.+|.|.||+-++..- +.+ +...+.+|+ .|..-.+
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm-------------Vks----------feV~~~PvRa~kfiaRkn 68 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM-------------VKS----------FEVSEVPVRAAKFIARKN 68 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEeccccee-------------eee----------eeecccchhhheeeeccc
Confidence 345678999999999999999999999999874321 111 111222222 3344457
Q ss_pred eEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceE
Q 001567 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1052)
Q Consensus 144 ~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (1052)
.+++|++|..|+++..+..... .....|..+|+++
T Consensus 69 Wiv~GsDD~~IrVfnynt~ekV------------------------------------~~FeAH~DyIR~i--------- 103 (794)
T KOG0276|consen 69 WIVTGSDDMQIRVFNYNTGEKV------------------------------------KTFEAHSDYIRSI--------- 103 (794)
T ss_pred eEEEecCCceEEEEecccceee------------------------------------EEeeccccceeee---------
Confidence 8999999999999877632211 0112344455554
Q ss_pred EEEeeCCcEEEEEecCCceeeeeeccc----ceecCCCCeE-EEEEcC-CCCEEEEEeeCCeEEEEecCCCCceeEEEEe
Q 001567 224 FVLYSNGQLMSCSVSKKGLKLAEFIKI----DKELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~----~~~~gh~~~v-~va~sp-d~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~ 297 (1052)
++.|.-.+++++++|.++++|+.... +...||+.-| +++||| |.+.+|+||-|+||+||.+.. ..+..++++
T Consensus 104 -avHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~g 181 (794)
T KOG0276|consen 104 -AVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEG 181 (794)
T ss_pred -eecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeec
Confidence 56788889999999999999987643 2237999999 999999 577899999999999999987 677888998
Q ss_pred ecCCCCCCCCCCeeEEEECCCC--CEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee--
Q 001567 298 YDWGYSMDDTGPVSCIAWTPDN--SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (1052)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~SpDg--~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-- 373 (1052)
|..+|+|+.|-|-| .+|+||++|.+++|||..+..|+.||.|| .+.|+.+.|+|.- ..++||+
T Consensus 182 --------HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH-t~Nvs~v~fhp~l----piiisgsED 248 (794)
T KOG0276|consen 182 --------HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH-TNNVSFVFFHPEL----PIIISGSED 248 (794)
T ss_pred --------cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc-cccceEEEecCCC----cEEEEecCC
Confidence 99999999998844 69999999999999999999999999999 8889999999987 8899998
Q ss_pred -eeeEEecCCceEEEEecCCcccEEEEec---cceeeeeccCCceeeeEeeecCc--------eEEEEecCCcc------
Q 001567 374 -SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGED--------RLLVVQSEDTD------ 435 (1052)
Q Consensus 374 -~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~~~~~~--------~l~~~~~~~~~------ 435 (1052)
++++|...++++-.++.-.-+++|++.. ...++.|...|.+.+ .+..++. +++-....+..
T Consensus 249 GTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks 327 (794)
T KOG0276|consen 249 GTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAVHSEIQAVNLKS 327 (794)
T ss_pred ccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecCCccEEEEcCceeeeeecee
Confidence 9999999999887666555566776664 223334433333322 1111110 01100000000
Q ss_pred -----h-heeeeeccCcccccCCC-cEEEEEEccCCCEEEEEeCCceEEEEccCCcEEEecCccceeeeEEEEEEEeCC-
Q 001567 436 -----E-LKILHLNLPVSYISQNW-PVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGK- 507 (1052)
Q Consensus 436 -----~-~~w~~~~~p~~~~~h~~-~V~~va~SpdG~~lavag~dG~ilwd~~s~~w~~f~~~~~e~~~~v~gl~W~~~- 507 (1052)
+ ..-..+.+..+-++... .-..++-||+|++++++|....++|....-|-|.||. ...+.|..+
T Consensus 328 ~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~RnK~fG~--------~~eFvw~~ds 399 (794)
T KOG0276|consen 328 VGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRNKAFGS--------GLEFVWAADS 399 (794)
T ss_pred ccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhhccccc--------ceeEEEcCCC
Confidence 0 00001111111122221 1234788999999999987777799977766667764 335678654
Q ss_pred EEEEEEEecCCCeEEEEEeeCCCCCCcceeEEeecCCccEEEEeeCCEEEEEEcCCeEEEEEEEEecccCCCCCCceEEE
Q 001567 508 IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLS 587 (1052)
Q Consensus 508 ~li~~~~~~~~~~~elrly~~~~ld~~~~l~~~~~~~~~~~~s~~~~~llv~~~d~~i~l~~~~~~~~~~~~~~~~i~l~ 587 (1052)
...+. + .....+.++ +. +.....+..+......+++.|+....++.+++|+++ .+.
T Consensus 400 ne~av-R---es~~~vki~-kn------fke~ksi~~~~~~e~i~gg~Llg~~ss~~~~fydW~-~~~------------ 455 (794)
T KOG0276|consen 400 NEFAV-R---ESNGNVKIF-KN------FKEHKSIRPDMSAEGIFGGPLLGVRSSDFLCFYDWE-SGE------------ 455 (794)
T ss_pred CeEEE-E---ecCCceEEE-ec------ceeccccccccceeeecCCceEEEEeCCeEEEEEcc-cce------------
Confidence 22211 1 223456666 42 111122222233455678899998899999999996 222
Q ss_pred EEEEEeeecccCCCceEEEccCCCccccccCCCCCCCccccccCCceeEEEeeCCEEEEEecCCCc----------eeee
Q 001567 588 TVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGR----------EREL 657 (1052)
Q Consensus 588 ~~~~i~~~~~~~hp~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~g~l~~l~~~~~~----------~~~l 657 (1052)
.+|+|.+. ...|.|. +++.-++......++||.+|-+.+.-..+.+. -.+|
T Consensus 456 lVrrI~v~--------~k~v~w~-----------d~g~lVai~~d~Sfyil~~n~d~v~~a~e~g~~v~eeGiedAfevL 516 (794)
T KOG0276|consen 456 LVRRIEVT--------SKHVYWS-----------DNGELVAIAGDDSFYILKFNADAVANAVEQGIEVTEEGIEDAFEVL 516 (794)
T ss_pred EEEEEeec--------cceeEEe-----------cCCCEEEEEecCceeEEEecHHHHHHHHhcCCCCcchhHHHHHHHH
Confidence 36777755 1223343 22223333334456777777666543333221 1467
Q ss_pred ccceeEEEEcCCCCccccCccceeeEEEECCCCcEEeccCCCCCCCCcccccccCcccccccceeeeeeecCCcEEEEEe
Q 001567 658 TDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVS 737 (1052)
Q Consensus 658 ~~~VE~~w~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~yPl~i~~~~~~i~g~~ 737 (1052)
.+.-|++ ..+.|..++ ++|.....|+.|.+.+. ...+-.+++.+|-||..+++..++-.+
T Consensus 517 gE~sE~v--~tg~WvgD~--------fiytts~nrlnY~vgGe----------~~~v~h~~~~mylLgy~~~~~rvYL~D 576 (794)
T KOG0276|consen 517 GEVSESV--KTGKWVGDC--------FIYTTSNNRLNYLVGGE----------TYTVAHLDRIMYLLGYVANDNRVYLHD 576 (794)
T ss_pred hhhhhhe--eeceeeeeE--------EEEeecccceeEEcCCc----------eEEEEEeccchhheeeeecCCEEEEee
Confidence 7777773 334455544 88999999999887665 344567888999999999999999999
Q ss_pred eeeeccc-CcCccceecCCcceecHHHHHHHHHHcccHHHHHHHHHHcCCCCCchHHHHHHHHHhhcccccccccccccc
Q 001567 738 QRMSFSA-CTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQI 816 (1052)
Q Consensus 738 ~~~~~~~-~~~~~~~~~~~~~~~~L~~il~~ll~~~~~~~a~~~a~~~~~l~~f~~~LE~lLh~vle~e~~~~~~~~~~~ 816 (1052)
.++.+-+ ++.+.++++++ ++.|++.+.|-++. |
T Consensus 577 ke~nVi~y~l~l~vleyqt------------~vmrrd~~~a~~vL-----------------------------p----- 610 (794)
T KOG0276|consen 577 KELNVISYKILLEVLEYQT------------LVLRRDLEVADGVL-----------------------------P----- 610 (794)
T ss_pred cccceEeEeeehHHHHHHH------------Hhhhcccccccccc-----------------------------c-----
Confidence 8754321 23333444433 66677766665332 2
Q ss_pred CCccccchhhhHHHHHHHHHccchhHHHHhhhcccccccchHHhHhccCChHHHHHHHHhcCcHhHHhhhhhhhhhccCc
Q 001567 817 SIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGP 896 (1052)
Q Consensus 817 ~i~~~~~~~~ll~~v~~fi~~~~~~l~ivv~caRKtE~~~W~~lF~~~g~P~~Lf~~cl~~~~l~~aa~yLiv~~~~e~~ 896 (1052)
.||+ +...+++.|++.. +|.|-....+-..+.+ ||.+|+.|+|++|..... +
T Consensus 611 ~I~k-----~~rt~va~Fle~~-g~~e~AL~~s~D~d~r---------------Felal~lgrl~iA~~la~-------e 662 (794)
T KOG0276|consen 611 TIPK-----EIRTKVAHFLESQ-GMKEQALELSTDPDQR---------------FELALKLGRLDIAFDLAV-------E 662 (794)
T ss_pred cCch-----hhhhhHHhHhhhc-cchHhhhhcCCChhhh---------------hhhhhhcCcHHHHHHHHH-------h
Confidence 3675 7889999999876 6776666666666666 999999999999998876 5
Q ss_pred chhHHHHHHHHHHHHhcccHhHHHHHHH
Q 001567 897 AVSQYSALRLLQATLDECLYELAGELVR 924 (1052)
Q Consensus 897 ~~~~~~~~~Ll~~al~~~~w~l~~eL~R 924 (1052)
+.+.+++.+|.++|+..++..||.|-..
T Consensus 663 ~~s~~Kw~~Lg~~al~~~~l~lA~EC~~ 690 (794)
T KOG0276|consen 663 ANSEVKWRQLGDAALSAGELPLASECFL 690 (794)
T ss_pred hcchHHHHHHHHHHhhcccchhHHHHHH
Confidence 5678999999999999999999999753
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-37 Score=321.77 Aligned_cols=344 Identities=15% Similarity=0.141 Sum_probs=284.1
Q ss_pred cCCcEEEeecCCceeEEEEEecChhhhhhc-CccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceee
Q 001567 38 SPCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (1052)
Q Consensus 38 sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~ 116 (1052)
+++.|.|-+..|--..+....|+..++..| +.+.++.|||||+.||+|+.|.++|+||+.+..+.....+|
T Consensus 85 te~~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH-------- 156 (480)
T KOG0271|consen 85 TEDVLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGH-------- 156 (480)
T ss_pred hhheeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCC--------
Confidence 456666666543333445567777787765 55789999999999999999999999999866543333333
Q ss_pred eEeeeeccccccccccceEEE--EeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeec
Q 001567 117 KISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD 194 (1052)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~v~~--i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~ 194 (1052)
..-|.| .+||++.|+.|+.||.|.+ |++++.+...
T Consensus 157 ---------------~~WVlcvawsPDgk~iASG~~dg~I~l--wdpktg~~~g-------------------------- 193 (480)
T KOG0271|consen 157 ---------------KNWVLCVAWSPDGKKIASGSKDGSIRL--WDPKTGQQIG-------------------------- 193 (480)
T ss_pred ---------------ccEEEEEEECCCcchhhccccCCeEEE--ecCCCCCccc--------------------------
Confidence 233444 5689999999999999987 7876654431
Q ss_pred CCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCE
Q 001567 195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQI 270 (1052)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~ 270 (1052)
..+.+|+..|+.++|.|. -..|.++.+++++.|+++++||...+.+. .||+.+| |+.|--+| +
T Consensus 194 -------~~l~gH~K~It~Lawep~-----hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-l 260 (480)
T KOG0271|consen 194 -------RALRGHKKWITALAWEPL-----HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-L 260 (480)
T ss_pred -------ccccCcccceeEEeeccc-----ccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-e
Confidence 234577888999999773 35688999999999999999999876554 7999999 99997665 8
Q ss_pred EEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEEC-----------CCCC-------------------
Q 001567 271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT-----------PDNS------------------- 320 (1052)
Q Consensus 271 lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~S-----------pDg~------------------- 320 (1052)
|++|+.|++|++|+..+ +.+.+.+++ |...|+.++.| |.|+
T Consensus 261 iySgS~DrtIkvw~a~d-G~~~r~lkG--------HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALD-GKLCRELKG--------HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred EEecCCCceEEEEEccc-hhHHHhhcc--------cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 99999999999999988 999999998 99999999887 2243
Q ss_pred ------EEEEEEcCCcEEEEEcCCC-eEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEec
Q 001567 321 ------AFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE 390 (1052)
Q Consensus 321 ------~Lasg~~Dg~v~vWd~~~~-~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~ 390 (1052)
.|++|++|.++.+|+.... +++....+| ..-|+.+.||||+ .+++|++ ++++|+..+|+.+.++.
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~V~fSPd~----r~IASaSFDkSVkLW~g~tGk~lasfR 406 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNHVSFSPDG----RYIASASFDKSVKLWDGRTGKFLASFR 406 (480)
T ss_pred hccCcceeEEecCCceEEEecccccccchhhhhch-hhheeeEEECCCc----cEEEEeecccceeeeeCCCcchhhhhh
Confidence 4999999999999998643 467777787 7889999999999 9999998 99999999999999999
Q ss_pred CCcccEEEEec---cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEE
Q 001567 391 GSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFL 467 (1052)
Q Consensus 391 ~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~l 467 (1052)
||-..|+++.+ .+.++++|.|.|+++|++.+... ...+-||.+.|.++.|||||+.+
T Consensus 407 GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl--------------------~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 407 GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL--------------------KQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee--------------------cccCCCCCceEEEEEecCCCcee
Confidence 99999988888 66899999999999999987553 34566899999999999999999
Q ss_pred EEEeCCceE-EEE
Q 001567 468 AVAGLHGLI-LYD 479 (1052)
Q Consensus 468 avag~dG~i-lwd 479 (1052)
|+||.|..+ +|.
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 999999999 884
No 5
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-34 Score=324.35 Aligned_cols=406 Identities=18% Similarity=0.236 Sum_probs=291.0
Q ss_pred ceEEEEeeCCeEEEEEcCCcEEEeecCCcee-EEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecC
Q 001567 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKV-RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (1052)
Q Consensus 22 ~~vv~fSpdg~llA~~sd~~v~IW~~~~~~~-~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~ 100 (1052)
...|.|||||++||++..+-+.||...+... ....+.+...-+.++..++++.||-|++.|++++.|-.+++|.+...+
T Consensus 99 v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k 178 (893)
T KOG0291|consen 99 VGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNK 178 (893)
T ss_pred cceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccc
Confidence 4568999999999999999999999842211 245555555556677889999999999999999999999999997544
Q ss_pred ce--eecCCCCCCCceeeeEeeeeccccccccccceEEEEe-ecCCeEEEEecCCcEEEEeccCccc---cc-------e
Q 001567 101 KS--IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-SDNKHMLLGLSDGSLYSISWKGEFY---GA-------F 167 (1052)
Q Consensus 101 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~d~~~llv~t~dg~v~~~~wd~~~~---~~-------~ 167 (1052)
.. ....+|. +..|.|+. .+...+++-+.||.+..|..+.... .. .
T Consensus 179 ~~~~~~l~gHk----------------------d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~ 236 (893)
T KOG0291|consen 179 NLFTYALNGHK----------------------DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSD 236 (893)
T ss_pred ccceEeccCCC----------------------cceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccc
Confidence 31 1111221 22344543 3456788889999988876551100 00 0
Q ss_pred e---ec-----c------------cCCCCccceeecccCCCcc-eeecCCCCeeeccccCCCccEEEEEecCCcceEEEE
Q 001567 168 E---LV-----H------------SSNDSSVAALSHHFPSNGL-ASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1052)
Q Consensus 168 ~---l~-----~------------~~~~~~~i~~i~~s~~~~l-~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (1052)
. .+ . ....+.++....|..+..+ +.+..++... ..-.+.-.-|.++..+......+++
T Consensus 237 d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~-LyelP~f~lih~LSis~~~I~t~~~ 315 (893)
T KOG0291|consen 237 DEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG-LYELPDFNLIHSLSISDQKILTVSF 315 (893)
T ss_pred cccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE-EEecCCceEEEEeecccceeeEEEe
Confidence 0 00 0 0000011222222221111 1111111111 0001112223333333333345666
Q ss_pred eeCCcEEEEEecC-Cceeeeeecccce---ecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCC
Q 001567 227 YSNGQLMSCSVSK-KGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (1052)
Q Consensus 227 s~dG~~~~~~~~d-~~i~~w~~~~~~~---~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~ 301 (1052)
+..|..++.++.. +.+-+|+...... .+||...+ |+++||||++||+|+.||.|+|||... +-++.++..
T Consensus 316 N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S-gfC~vTFte---- 390 (893)
T KOG0291|consen 316 NSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS-GFCFVTFTE---- 390 (893)
T ss_pred cccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC-ceEEEEecc----
Confidence 7778888877765 4566776654322 27999999 999999999999999999999999987 889999998
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee----eeeE
Q 001567 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQ 377 (1052)
Q Consensus 302 ~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~~~~ 377 (1052)
|+..|+.+.|+.+|+.+.+++-||+|+.||+...+...|+........++++..|.| +.+..|. .+.+
T Consensus 391 ----Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG----elV~AG~~d~F~Ifv 462 (893)
T KOG0291|consen 391 ----HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG----ELVCAGAQDSFEIFV 462 (893)
T ss_pred ----CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC----CEEEeeccceEEEEE
Confidence 999999999999999999999999999999999999999987656678889999988 8887776 7899
Q ss_pred EecCCceEEEEecCCcccEE--EEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCc
Q 001567 378 WDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (1052)
Q Consensus 378 W~~~~~~l~~~~~~~~~~v~--~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~ 454 (1052)
|+.++|+++-++.||.+.|. +|++ +..++|+|+|.|+++|++...... .....+...
T Consensus 463 WS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~--------------------vEtl~i~sd 522 (893)
T KOG0291|consen 463 WSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT--------------------VETLEIRSD 522 (893)
T ss_pred EEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce--------------------eeeEeeccc
Confidence 99999999999999999995 4666 889999999999999998765431 112234556
Q ss_pred EEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 001567 455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1052)
Q Consensus 455 V~~va~SpdG~~lavag~dG~i-lwd~~s~ 483 (1052)
+..++|+|||+.||+++-||.+ +||.+.+
T Consensus 523 vl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 523 VLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred eeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 8999999999999999999999 9998754
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-35 Score=305.34 Aligned_cols=316 Identities=14% Similarity=0.230 Sum_probs=250.6
Q ss_pred CCceE--EEEeeCCeEEEEE-cCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEE
Q 001567 20 SSQQI--IYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (1052)
Q Consensus 20 ~~~~v--v~fSpdg~llA~~-sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l 96 (1052)
+.++| ++|||+|+.||++ +|.+++|||.. +..|+...++ |..-+.+|+|||||+.||+|+.||.|++||.
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~-TeTp~~t~Kg------H~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLD-TETPLFTCKG------HKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccC-CCCcceeecC------CccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 45666 6899999999998 58899999997 7777776654 3456789999999999999999999999998
Q ss_pred EecCcee-ecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCC
Q 001567 97 QITEKSI-QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND 175 (1052)
Q Consensus 97 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~ 175 (1052)
.++...- .+.+|.. .+.++.+.+-. +.+....++.+++||.+++ |+.......
T Consensus 187 ktg~~~g~~l~gH~K---~It~Lawep~h-------------l~p~~r~las~skDg~vrI--Wd~~~~~~~-------- 240 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKK---WITALAWEPLH-------------LVPPCRRLASSSKDGSVRI--WDTKLGTCV-------- 240 (480)
T ss_pred CCCCcccccccCccc---ceeEEeecccc-------------cCCCccceecccCCCCEEE--EEccCceEE--------
Confidence 8765321 1222321 12222222111 1123457888899999998 443332111
Q ss_pred CccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeecccce---
Q 001567 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--- 252 (1052)
Q Consensus 176 ~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~--- 252 (1052)
..+.+|...|+++.| --+ .++++++.|.+|++|+...+..
T Consensus 241 --------------------------~~lsgHT~~VTCvrw----------GG~-gliySgS~DrtIkvw~a~dG~~~r~ 283 (480)
T KOG0271|consen 241 --------------------------RTLSGHTASVTCVRW----------GGE-GLIYSGSQDRTIKVWRALDGKLCRE 283 (480)
T ss_pred --------------------------EEeccCccceEEEEE----------cCC-ceEEecCCCceEEEEEccchhHHHh
Confidence 223567778888776 112 3678899999999999887654
Q ss_pred ecCCCCeE-EEEEc-----------CCCC-------------------------EEEEEeeCCeEEEEecCCCCceeEEE
Q 001567 253 ELGSGDAV-CASIA-----------PEQQ-------------------------ILAVGTRRGVVELYDLAESASLIRTV 295 (1052)
Q Consensus 253 ~~gh~~~v-~va~s-----------pd~~-------------------------~lAsgs~Dg~V~vwd~~~~~~~~~~l 295 (1052)
+.||...| .++.| |.++ .+++||.|+++.+|+-....+++..+
T Consensus 284 lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm 363 (480)
T KOG0271|consen 284 LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM 363 (480)
T ss_pred hcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhh
Confidence 38999988 88776 3333 49999999999999976645667777
Q ss_pred EeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee--
Q 001567 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (1052)
Q Consensus 296 ~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-- 373 (1052)
.+ |..-|+.+.|||||+++|+|+-|+.|++|+..+|+.+.+++|| ...|..++++.|. ..++||+
T Consensus 364 tg--------Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH-v~~VYqvawsaDs----RLlVS~SkD 430 (480)
T KOG0271|consen 364 TG--------HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH-VAAVYQVAWSADS----RLLVSGSKD 430 (480)
T ss_pred hc--------hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc-cceeEEEEeccCc----cEEEEcCCC
Confidence 77 9999999999999999999999999999999999999999999 8999999999998 8999998
Q ss_pred -eeeEEecCCceEEEEecCCcccEEEEec---cceeeeeccCCceeeeE
Q 001567 374 -SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQ 418 (1052)
Q Consensus 374 -~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~ 418 (1052)
++++|+..+.++..-+.||.+.|+++++ |+.+++|+.|..+++|.
T Consensus 431 sTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 431 STLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999988877 88999999999999884
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.1e-33 Score=294.51 Aligned_cols=275 Identities=14% Similarity=0.143 Sum_probs=227.4
Q ss_pred cCccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEE--Eeec--C
Q 001567 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSD--N 142 (1052)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~~d--~ 142 (1052)
.+++..+.||+||+.||+++.+|.+++|++......+.+.+|. ..+.+ +.|. +
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~-----------------------~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT-----------------------SRVGAAVFHPVDSD 231 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccc-----------------------cceeeEEEccCCCc
Confidence 4678899999999999999999999999997654333343443 22222 2333 4
Q ss_pred CeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcce
Q 001567 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (1052)
Q Consensus 143 ~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (1052)
..++.++.||++.+|..+.+.. . ..+.+|...|..+
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~--l----------------------------------~~l~gH~~RVs~V-------- 267 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETP--L----------------------------------QDLEGHLARVSRV-------- 267 (459)
T ss_pred cceeeeccCCceeeeccCCCcc--h----------------------------------hhhhcchhhheee--------
Confidence 5789999999999976665421 1 1123555566554
Q ss_pred EEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEee
Q 001567 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1052)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~ 298 (1052)
+|.|+|+++.+++-|.+-++||..+.... .||...| +++|+|||.++++|+-|..-||||+++ ++++..+.+
T Consensus 268 --afHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~g- 343 (459)
T KOG0272|consen 268 --AFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLAG- 343 (459)
T ss_pred --eecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc-CcEEEEecc-
Confidence 46899999999999999999999987654 7999999 999999999999999999999999999 999999998
Q ss_pred cCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeeeeeeEE
Q 001567 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQW 378 (1052)
Q Consensus 299 ~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W 378 (1052)
|.++|.+|+|||+|+.||||+.|++++|||+.....+.++.+| .+-|+.+.|+|..
T Consensus 344 -------H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH-~nlVS~Vk~~p~~---------------- 399 (459)
T KOG0272|consen 344 -------HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH-SNLVSQVKYSPQE---------------- 399 (459)
T ss_pred -------cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc-cchhhheEecccC----------------
Confidence 9999999999999999999999999999999999999999988 7778888887743
Q ss_pred ecCCceEEEEecCCcccEEEEeccceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEE
Q 001567 379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (1052)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~v 458 (1052)
|..++|++.|+++++|.-.... +..++.||.+.|-++
T Consensus 400 -----------------------g~fL~TasyD~t~kiWs~~~~~--------------------~~ksLaGHe~kV~s~ 436 (459)
T KOG0272|consen 400 -----------------------GYFLVTASYDNTVKIWSTRTWS--------------------PLKSLAGHEGKVISL 436 (459)
T ss_pred -----------------------CeEEEEcccCcceeeecCCCcc--------------------cchhhcCCccceEEE
Confidence 4456788899999998744332 256788999999999
Q ss_pred EEccCCCEEEEEeCCceE-EEE
Q 001567 459 AASKDGMFLAVAGLHGLI-LYD 479 (1052)
Q Consensus 459 a~SpdG~~lavag~dG~i-lwd 479 (1052)
.+|+||++++++|.|.++ +|.
T Consensus 437 Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 437 DISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EeccCCceEEEeccCceeeecc
Confidence 999999999999999999 995
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.9e-29 Score=280.13 Aligned_cols=455 Identities=17% Similarity=0.182 Sum_probs=305.2
Q ss_pred eEEEEeeCCeEEEEEcCCc-EEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCc
Q 001567 23 QIIYFKVNNGLLLIASPCH-IELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1052)
Q Consensus 23 ~vv~fSpdg~llA~~sd~~-v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~ 101 (1052)
.-++.||||.+|.++.++. ..+-+.. .+..+-.+. -.+++-++.|||||+.+|++.. +.+.||.......
T Consensus 59 ~~ialSp~g~lllavdE~g~~~lvs~~-~r~Vlh~f~-------fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~ 129 (893)
T KOG0291|consen 59 TRIALSPDGTLLLAVDERGRALLVSLL-SRSVLHRFN-------FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIK 129 (893)
T ss_pred EEEEeCCCceEEEEEcCCCcEEEEecc-cceeeEEEe-------ecCccceEEECCCCcEEEEEec-ceeEEEecCcchh
Confidence 3478999999999887553 4444442 333332221 1356679999999999999875 5799999863322
Q ss_pred eeecCCCCCCCceeeeEeeeeccccccccccceEEEE--eecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccc
Q 001567 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1052)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i 179 (1052)
..+.+ +.......++...++++ +.|...+++|+.|-.++++.-++..+-.
T Consensus 130 ~~~~p---------------Fvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~------------- 181 (893)
T KOG0291|consen 130 NEFNP---------------FVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF------------- 181 (893)
T ss_pred cccCc---------------ceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc-------------
Confidence 11100 01111223333345555 4566778888999999887665443211
Q ss_pred eeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeec-----------
Q 001567 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI----------- 248 (1052)
Q Consensus 180 ~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~----------- 248 (1052)
...+.+|+.+|...-|.........++.||.+++...+......|...
T Consensus 182 ---------------------~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~ 240 (893)
T KOG0291|consen 182 ---------------------TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEM 240 (893)
T ss_pred ---------------------eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccc
Confidence 123456777787776666666666777777776666552222222210
Q ss_pred --ccce------e--------cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCC---------
Q 001567 249 --KIDK------E--------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY--------- 302 (1052)
Q Consensus 249 --~~~~------~--------~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~--------- 302 (1052)
.++. | .....-| |++|++.-.+||+|-.+|...+|++.+ ..+++.++..+.+.
T Consensus 241 ~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~-f~lih~LSis~~~I~t~~~N~tG 319 (893)
T KOG0291|consen 241 DEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD-FNLIHSLSISDQKILTVSFNSTG 319 (893)
T ss_pred cccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC-ceEEEEeecccceeeEEEecccC
Confidence 0000 0 1111344 888888888888888888888888765 44444333221100
Q ss_pred --------------------------CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeee
Q 001567 303 --------------------------SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 356 (1052)
Q Consensus 303 --------------------------~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~ 356 (1052)
-.+|...++|+++||||+++|+|++||.|+|||...+-|+.|+.+| ++.|+.+
T Consensus 320 DWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH-ts~Vt~v 398 (893)
T KOG0291|consen 320 DWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH-TSGVTAV 398 (893)
T ss_pred CEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC-CCceEEE
Confidence 0269999999999999999999999999999999999999999999 8999999
Q ss_pred eEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcc-cE--EEEec-cceeeeeccCC-ceeeeEeeecCceEEE
Q 001567 357 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE-RV--LIFSF-GKCCLNRGVSG-MTYARQVIYGEDRLLV 428 (1052)
Q Consensus 357 ~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~-~v--~~~s~-~k~~~s~s~d~-~v~~w~~~~~~~~l~~ 428 (1052)
.|+..+ +.+.|.+ +++.||...|+.+.+...... +. ++.++ |..+.+|+.|. .+.+|++.+|..
T Consensus 399 ~f~~~g----~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql---- 470 (893)
T KOG0291|consen 399 QFTARG----NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL---- 470 (893)
T ss_pred EEEecC----CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee----
Confidence 999998 8888777 999999999999999865322 12 56666 67777888777 689999887764
Q ss_pred EecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCc--EEEecCccceeeeEEEEEEEe
Q 001567 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGLLWL 505 (1052)
Q Consensus 429 ~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~--w~~f~~~~~e~~~~v~gl~W~ 505 (1052)
...+.||.+||.+++|+|+|..||+|+-|.++ +||+-+.. -..+. -.-.+.++...
T Consensus 471 ----------------lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-----i~sdvl~vsfr 529 (893)
T KOG0291|consen 471 ----------------LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-----IRSDVLAVSFR 529 (893)
T ss_pred ----------------eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-----eccceeEEEEc
Confidence 56788999999999999999999999999999 99985431 11111 00113445554
Q ss_pred --CCEEEEEEEecCCCeEEEEEeeCC-CC---------C--Cc-----ceeEEee---cCCccEEEEeeCCEEEEEEcCC
Q 001567 506 --GKIIVVCNYIDSSNTYELLFYPRY-HL---------D--QS-----SLLCRKS---LLAKPIVMDVYEDYILVTYRPF 563 (1052)
Q Consensus 506 --~~~li~~~~~~~~~~~elrly~~~-~l---------d--~~-----~~l~~~~---~~~~~~~~s~~~~~llv~~~d~ 563 (1052)
|.-+.++ +-+.+|-+|+.. .. | .+ .+..... -+-..+.++++|..++.+..+.
T Consensus 530 PdG~elaVa-----TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn 604 (893)
T KOG0291|consen 530 PDGKELAVA-----TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESN 604 (893)
T ss_pred CCCCeEEEE-----EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcc
Confidence 7777777 445678888763 11 1 00 0111100 1223467888999999988888
Q ss_pred eEEEEEEE
Q 001567 564 DVHIFHVK 571 (1052)
Q Consensus 564 ~i~l~~~~ 571 (1052)
.|++|++.
T Consensus 605 ~iCiY~v~ 612 (893)
T KOG0291|consen 605 SICIYDVP 612 (893)
T ss_pred cEEEEECc
Confidence 99999885
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=9.5e-28 Score=261.71 Aligned_cols=481 Identities=14% Similarity=0.158 Sum_probs=313.3
Q ss_pred CCceEEEEeeCCeEEEEEc-CCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCC--cEEEEEEE
Q 001567 20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS--LYLHIFKV 96 (1052)
Q Consensus 20 ~~~~vv~fSpdg~llA~~s-d~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d--g~l~i~~l 96 (1052)
+..-|..|||.|.++|++. .++|+||+..+....+....+ -+ -|++..+.|++||++||+.... .+.++|-.
T Consensus 60 ~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~---v~--aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~ 134 (603)
T KOG0318|consen 60 HQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQ---VL--AGPIKDISWDFDSKRIAAVGEGRERFGHVFLW 134 (603)
T ss_pred ceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeee---ec--ccccccceeCCCCcEEEEEecCccceeEEEEe
Confidence 4456689999999999994 689999998642222221111 12 3899999999999999887633 33444443
Q ss_pred EecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecC-CeEEEEecCCcEEEEeccCccccceeecccCCC
Q 001567 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSND 175 (1052)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~ 175 (1052)
+++...--+.+|. ..+.+. .|.+.+ -+++.++.|+.+..+ ++.. +.+.
T Consensus 135 DSG~SvGei~GhS---r~ins~------------------~~KpsRPfRi~T~sdDn~v~ff--eGPP---FKFk----- 183 (603)
T KOG0318|consen 135 DSGNSVGEITGHS---RRINSV------------------DFKPSRPFRIATGSDDNTVAFF--EGPP---FKFK----- 183 (603)
T ss_pred cCCCccceeeccc---eeEeee------------------eccCCCceEEEeccCCCeEEEe--eCCC---eeee-----
Confidence 3333211111111 111222 222222 467888899998774 3322 2110
Q ss_pred CccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee--
Q 001567 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-- 253 (1052)
Q Consensus 176 ~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-- 253 (1052)
.....|...|.++.| +|||..+++.+.|+.+.++|+.++++.
T Consensus 184 --------------------------~s~r~HskFV~~VRy----------sPDG~~Fat~gsDgki~iyDGktge~vg~ 227 (603)
T KOG0318|consen 184 --------------------------SSFREHSKFVNCVRY----------SPDGSRFATAGSDGKIYIYDGKTGEKVGE 227 (603)
T ss_pred --------------------------ecccccccceeeEEE----------CCCCCeEEEecCCccEEEEcCCCccEEEE
Confidence 112345556777665 788888888888888888888887765
Q ss_pred ----cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC
Q 001567 254 ----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (1052)
Q Consensus 254 ----~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D 328 (1052)
.+|.+.| .++|+||++.+++++.|.++||||+.+ .++++++..-.. -...-..+-|. +..|++-+.+
T Consensus 228 l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~-~slv~t~~~~~~-----v~dqqvG~lWq--kd~lItVSl~ 299 (603)
T KOG0318|consen 228 LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST-NSLVSTWPMGST-----VEDQQVGCLWQ--KDHLITVSLS 299 (603)
T ss_pred ecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec-cceEEEeecCCc-----hhceEEEEEEe--CCeEEEEEcC
Confidence 4799999 999999999999999999999999998 788887765110 01222345566 5688999999
Q ss_pred CcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEE-ecCCcccEEEEec--c
Q 001567 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI-EEGSSERVLIFSF--G 402 (1052)
Q Consensus 329 g~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~-~~~~~~~v~~~s~--~ 402 (1052)
|++...+...+....++.|| ...|+++..+|++ ..+.||+ .+..|+...+..-.. ..+|...|..+.. .
T Consensus 300 G~in~ln~~d~~~~~~i~GH-nK~ITaLtv~~d~----~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~ 374 (603)
T KOG0318|consen 300 GTINYLNPSDPSVLKVISGH-NKSITALTVSPDG----KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES 374 (603)
T ss_pred cEEEEecccCCChhheeccc-ccceeEEEEcCCC----CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCC
Confidence 99999999998889999999 8899999999998 8999998 899999987765443 3678999987777 4
Q ss_pred ceeeeeccCCceeeeEeeecC---ce--------EEEEecCC--cchhe-eeeeccCc-----ccccCCCcEEEEEEccC
Q 001567 403 KCCLNRGVSGMTYARQVIYGE---DR--------LLVVQSED--TDELK-ILHLNLPV-----SYISQNWPVQHVAASKD 463 (1052)
Q Consensus 403 k~~~s~s~d~~v~~w~~~~~~---~~--------l~~~~~~~--~~~~~-w~~~~~p~-----~~~~h~~~V~~va~Spd 463 (1052)
..+.+.++|.++++-++..+. .. .-+....+ ..... ...+.+.+ ....-.....++|++|+
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~ 454 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD 454 (603)
T ss_pred CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC
Confidence 688899999999887653221 10 10111111 10000 01111111 00011223578999999
Q ss_pred CCEEEEEeCCceE-EEEccCCcEEEecC-ccceeeeEEEEEEE--eCCEEEEEEEecCCCeEEEEEeeCC-CCCCcceeE
Q 001567 464 GMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLC 538 (1052)
Q Consensus 464 G~~lavag~dG~i-lwd~~s~~w~~f~~-~~~e~~~~v~gl~W--~~~~li~~~~~~~~~~~elrly~~~-~ld~~~~l~ 538 (1052)
|+.+|+||+||.+ +|.+..+..+.+.. +.+.. .++.+.+ .+.++++| +...++.+|++. +... ...|
T Consensus 455 ~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a--~iT~vaySpd~~yla~~-----Da~rkvv~yd~~s~~~~-~~~w 526 (603)
T KOG0318|consen 455 GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRA--AITDVAYSPDGAYLAAG-----DASRKVVLYDVASREVK-TNRW 526 (603)
T ss_pred CCEEEEecccceEEEEEecCCcccceeeeecccC--CceEEEECCCCcEEEEe-----ccCCcEEEEEcccCcee-ccee
Confidence 9999999999999 99998765433321 11222 2444555 46678877 666889999996 2221 1122
Q ss_pred EeecCCccEEE--EeeCCEEEEEEcCCeEEEEEEEEecccCCCCCCceEEEEEEEEeeecccCCCceEEEccCCC
Q 001567 539 RKSLLAKPIVM--DVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQV 611 (1052)
Q Consensus 539 ~~~~~~~~~~~--s~~~~~llv~~~d~~i~l~~~~~~~~~~~~~~~~i~l~~~~~i~~~~~~~hp~~v~~i~~~~ 611 (1052)
. .+.+.+.++ +|...+++..+-|-.|.||.++. |++ .|.+.+ -||-+|+.+-|..
T Consensus 527 ~-FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k-----P~~----------~i~ikn--AH~~gVn~v~wld 583 (603)
T KOG0318|consen 527 A-FHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK-----PAK----------HIIIKN--AHLGGVNSVAWLD 583 (603)
T ss_pred e-eeeeeEEEEEeCCCceEEEeccccceEEEEEccC-----hhh----------heEecc--ccccCceeEEEec
Confidence 2 134555555 45555666677788888887752 221 122232 2777777777764
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=9.2e-31 Score=278.88 Aligned_cols=265 Identities=15% Similarity=0.162 Sum_probs=226.4
Q ss_pred eEEEEeeCCcEEEEEecCCceeeeeecccce---ecCCCCeE-EEEEcCC--CCEEEEEeeCCeEEEEecCCCCceeEEE
Q 001567 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPE--QQILAVGTRRGVVELYDLAESASLIRTV 295 (1052)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~---~~gh~~~v-~va~spd--~~~lAsgs~Dg~V~vwd~~~~~~~~~~l 295 (1052)
..+.|+.||..+++++-+|.+++|+...... +.||...+ ++.|+|. +..+|+|+.||+|++|+++. ..++..+
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~-e~~l~~l 257 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ-ETPLQDL 257 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC-Ccchhhh
Confidence 3467899999999999999999998776543 37999999 9999997 56899999999999999987 6778888
Q ss_pred EeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee--
Q 001567 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (1052)
Q Consensus 296 ~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-- 373 (1052)
.+ |...|..++|+|+|++|+|++.|.++++||+.++..+...+|| ..+|.+++|.|+| ..++||+
T Consensus 258 ~g--------H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH-s~~v~~iaf~~DG----SL~~tGGlD 324 (459)
T KOG0272|consen 258 EG--------HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH-SKGVFSIAFQPDG----SLAATGGLD 324 (459)
T ss_pred hc--------chhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc-ccccceeEecCCC----ceeeccCcc
Confidence 88 9999999999999999999999999999999999888888888 7889999999999 8889987
Q ss_pred -eeeEEecCCceEEEEecCCcccEEE--Eec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccc
Q 001567 374 -SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (1052)
Q Consensus 374 -~~~~W~~~~~~l~~~~~~~~~~v~~--~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~ 449 (1052)
..++||..++++++.+.||...|+. |++ |..++|||.|+++++||+..... ..+..
T Consensus 325 ~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~--------------------ly~ip 384 (459)
T KOG0272|consen 325 SLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE--------------------LYTIP 384 (459)
T ss_pred chhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc--------------------ceecc
Confidence 7899999999999999999999954 555 88999999999999999976554 33455
Q ss_pred cCCCcEEEEEEcc-CCCEEEEEeCCceE-EEEccCCcEEEec-CccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEe
Q 001567 450 SQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQKKWRVFG-DITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFY 526 (1052)
Q Consensus 450 ~h~~~V~~va~Sp-dG~~lavag~dG~i-lwd~~s~~w~~f~-~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~elrly 526 (1052)
+|.+-|..|.|+| .|.+|++||.|+++ +|+..+ |...+ -..||..+....+...++.+++++ .+..+++|
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s-----~DRT~KLW 457 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--WSPLKSLAGHEGKVISLDISPDSQAIATSS-----FDRTIKLW 457 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCcceeeecCCC--cccchhhcCCccceEEEEeccCCceEEEec-----cCceeeec
Confidence 7999999999998 79999999999999 998765 44332 233555555556666778888884 44678887
Q ss_pred e
Q 001567 527 P 527 (1052)
Q Consensus 527 ~ 527 (1052)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 4
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.7e-29 Score=280.08 Aligned_cols=426 Identities=14% Similarity=0.195 Sum_probs=281.7
Q ss_pred CceE--EEEeeCCeEEEEEc-CCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccE--EEEEeCCcEEEEEE
Q 001567 21 SQQI--IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKL--IAVVTSSLYLHIFK 95 (1052)
Q Consensus 21 ~~~v--v~fSpdg~llA~~s-d~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~--Lav~t~dg~l~i~~ 95 (1052)
..|+ .+|+|-|.++|+++ |+.+++||.. ..--+..++. +-|.+-++.|.|+-.+ |++|..|+.+++||
T Consensus 105 e~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~-~~~~th~fkG------~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwn 177 (775)
T KOG0319|consen 105 EAPVITMAFDPTGTLLATGGADGRVKVWDIK-NGYCTHSFKG------HGGVVSSLLFHPHWNRWLLASGATDGTVRVWN 177 (775)
T ss_pred CCCeEEEEEcCCCceEEeccccceEEEEEee-CCEEEEEecC------CCceEEEEEeCCccchhheeecCCCceEEEEE
Confidence 4455 68999999999985 8999999995 4433333321 2355667999998865 89999999999999
Q ss_pred EEecCcee-ecCCCCC---------CC-----------ceeeeEe-eeeccccccccccceEEEEeec-----CCeEEEE
Q 001567 96 VQITEKSI-QIGGKQP---------SG-----------LFFIKIS-LVLNEQLPFAEKGLSVSNIVSD-----NKHMLLG 148 (1052)
Q Consensus 96 l~~~~~~~-~~~~~~~---------~~-----------~~~~~~~-~~~~~~~~~~~~~~~v~~i~~d-----~~~llv~ 148 (1052)
+.....-. ....|.. .+ ..+|.+. .......+....-..+ .+..+ +.+++++
T Consensus 178 l~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~v-v~l~~~~~~~~~~~~Ta 256 (775)
T KOG0319|consen 178 LNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESV-VRLREELGGKGEYIITA 256 (775)
T ss_pred cccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeE-EEechhcCCcceEEEEe
Confidence 98544300 0001100 00 0112110 0000000000000001 11122 3578888
Q ss_pred ecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeec---------CCCCeeeccccCCCccEEEEEecC-
Q 001567 149 LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD---------TSGAFVSDHKFPISSAIIWLELCL- 218 (1052)
Q Consensus 149 t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~---------~~~~~~~~~~~~~~~~i~~i~~~~- 218 (1052)
+++|.++. |+.+..........+....-....+....+++.... .........+.+-...|.+|.|=.
T Consensus 257 G~~g~~~~--~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~ 334 (775)
T KOG0319|consen 257 GGSGVVQY--WDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGP 334 (775)
T ss_pred cCCceEEE--EecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCC
Confidence 88898887 554432111000000000011111111111111000 000001111122222333333211
Q ss_pred -------------------------------CcceEEEEeeCCcEEEEEecCCceeeeeeccccee-------cCCCCeE
Q 001567 219 -------------------------------PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAV 260 (1052)
Q Consensus 219 -------------------------------~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-------~gh~~~v 260 (1052)
.....+.+..+|-++++++.|.++++|........ .||++.|
T Consensus 335 e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~sv 414 (775)
T KOG0319|consen 335 EESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSV 414 (775)
T ss_pred ccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccccc
Confidence 11123344578889999999999999966332211 6899999
Q ss_pred -EEEEcCC-CCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCC-CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcC
Q 001567 261 -CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY-SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (1052)
Q Consensus 261 -~va~spd-~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~-~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~ 337 (1052)
+++++.. ..+++++|.|+++++|++.. .+.....-.....+ ...|...|+||+.+|+.+.+|+||.|++.+||++.
T Consensus 415 gava~~~~~asffvsvS~D~tlK~W~l~~-s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 415 GAVAGSKLGASFFVSVSQDCTLKLWDLPK-SKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE 493 (775)
T ss_pred ceeeecccCccEEEEecCCceEEEecCCC-cccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence 9999875 46899999999999999975 21111000000011 12499999999999999999999999999999999
Q ss_pred CCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccEEEEec---cceeeeeccC
Q 001567 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVS 411 (1052)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d 411 (1052)
.+.+..+|.|| ...|.++.|+|++ +.+++++ ++++|.+.++.++.++.||+..|+..+| ++.++|++.|
T Consensus 494 ~~~l~~vLsGH-~RGvw~V~Fs~~d----q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 494 QLRLLGVLSGH-TRGVWCVSFSKND----QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred CceEEEEeeCC-ccceEEEEecccc----ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC
Confidence 99999999999 8899999999998 8888887 9999999999999999999999988888 8999999999
Q ss_pred CceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccC
Q 001567 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1052)
Q Consensus 412 ~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s 482 (1052)
|-+++|++.+++. ..++.+|++.|+.++.+|++.++++||.||.+ +|.=.|
T Consensus 569 GliKlWnikt~eC--------------------~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 569 GLIKLWNIKTNEC--------------------EMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CcEEEEeccchhh--------------------hhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999999988775 67889999999999999999999999999999 886433
No 12
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.8e-28 Score=274.48 Aligned_cols=422 Identities=16% Similarity=0.178 Sum_probs=284.3
Q ss_pred EEEeeCCeEEEEEc-CCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCcee
Q 001567 25 IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (1052)
Q Consensus 25 v~fSpdg~llA~~s-d~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~ 103 (1052)
++++||++.|.++. ..-+++|+.. .+ .+.|+-+. .+.+|+..++|.|-|..+|+++.||.+++||+..+...-
T Consensus 68 ~~l~~d~~~L~~a~rs~llrv~~L~-tg----k~irswKa-~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th 141 (775)
T KOG0319|consen 68 LALTPDEEVLVTASRSQLLRVWSLP-TG----KLIRSWKA-IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH 141 (775)
T ss_pred eeecCCccEEEEeeccceEEEEEcc-cc----hHhHhHhh-ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE
Confidence 67889999888886 5579999995 43 34444332 367999999999999999999999999999998554333
Q ss_pred ecCCCCCC----------------------CceeeeEeeeeccccccccccceEE--EEeecCCeEEEEecCCcEEEEec
Q 001567 104 QIGGKQPS----------------------GLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISW 159 (1052)
Q Consensus 104 ~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~v~--~i~~d~~~llv~t~dg~v~~~~w 159 (1052)
.+.+|++. ...+|++.-.-........+...|+ ++.+|+..++.++.|..+.+|+.
T Consensus 142 ~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~ 221 (775)
T KOG0319|consen 142 SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDL 221 (775)
T ss_pred EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeeh
Confidence 33333221 1122332211111111122233344 45678888999999998877544
Q ss_pred cCccccceeecccCCCCccceeecccCCCc---ceeecCCCCeee----------ccccCCCccEEEEEecCCcceEEEE
Q 001567 160 KGEFYGAFELVHSSNDSSVAALSHHFPSNG---LASVDTSGAFVS----------DHKFPISSAIIWLELCLPMRLLFVL 226 (1052)
Q Consensus 160 d~~~~~~~~l~~~~~~~~~i~~i~~s~~~~---l~s~~~~~~~~~----------~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (1052)
........-+.-.........+...++. +.+.++++.... ..-......+..+.+.+.+..++.+
T Consensus 222 --~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~v 299 (775)
T KOG0319|consen 222 --VQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLV 299 (775)
T ss_pred --hhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEE
Confidence 2221111000000011111111111110 111111111110 0000001113333333333332332
Q ss_pred ---------------------------------eeCCcEEEEEecCCceeeeeeccccee--cCCCCeE-EEEEcCCCCE
Q 001567 227 ---------------------------------YSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQI 270 (1052)
Q Consensus 227 ---------------------------------s~dG~~~~~~~~d~~i~~w~~~~~~~~--~gh~~~v-~va~spd~~~ 270 (1052)
.|+-+.++++++...+|+++..+..+. .||++.| +++...+|-+
T Consensus 300 taeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~l 379 (775)
T KOG0319|consen 300 TAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDL 379 (775)
T ss_pred EccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcE
Confidence 344567777777788888877665443 8999999 9998888999
Q ss_pred EEEEeeCCeEEEEecCCCCc---eeEEEEeecCCCCCCCCCCeeEEEECCCC-CEEEEEEcCCcEEEEEcCCC-------
Q 001567 271 LAVGTRRGVVELYDLAESAS---LIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGC------- 339 (1052)
Q Consensus 271 lAsgs~Dg~V~vwd~~~~~~---~~~~l~~~~~~~~~~h~g~V~~l~~SpDg-~~Lasg~~Dg~v~vWd~~~~------- 339 (1052)
||+|+.|.+|++|.++++.. ++.... +|++.|.+++++.-| ..|+++|.|+++++|++...
T Consensus 380 lat~sKD~svilWr~~~~~~~~~~~a~~~--------gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~ 451 (775)
T KOG0319|consen 380 LATGSKDKSVILWRLNNNCSKSLCVAQAN--------GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPI 451 (775)
T ss_pred EEEecCCceEEEEEecCCcchhhhhhhhc--------ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccc
Confidence 99999999999999955222 122223 499999999998766 59999999999999999762
Q ss_pred eEEE--EecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccEEEEec---cceeeeeccC
Q 001567 340 RLMS--TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVS 411 (1052)
Q Consensus 340 ~l~~--tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d 411 (1052)
.+.+ +-..| ...|++++++|++ ..+++|+ +.++|+.+..++..++.||..+|++++| .+.++|+|.|
T Consensus 452 ~~~~~~t~~aH-dKdIN~Vaia~nd----kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD 526 (775)
T KOG0319|consen 452 VLTCRYTERAH-DKDINCVAIAPND----KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGD 526 (775)
T ss_pred eehhhHHHHhh-cccccceEecCCC----ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCC
Confidence 1111 22234 7789999999998 8999999 8999999999999999999999998888 4478899999
Q ss_pred CceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEE
Q 001567 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV 487 (1052)
Q Consensus 412 ~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~ 487 (1052)
+|+++|.+..... ..++.||...|..++|-.+|+.|++||.||.+ +|++.++.+..
T Consensus 527 ~TvKIW~is~fSC--------------------lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 527 KTVKIWSISTFSC--------------------LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred ceEEEEEecccee--------------------eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh
Confidence 9999999876554 78899999999999999999999999999999 99999876543
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.1e-27 Score=261.19 Aligned_cols=375 Identities=16% Similarity=0.235 Sum_probs=249.0
Q ss_pred eEEEEeeCCeEEEEE-cCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCc
Q 001567 23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1052)
Q Consensus 23 ~vv~fSpdg~llA~~-sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~ 101 (1052)
..|.|||||.+||++ +|+++.|+|. +.+.+++.+.. +-.+.|.+.+++||||++.++++++|.+++|||+.....
T Consensus 194 ~~VRysPDG~~Fat~gsDgki~iyDG-ktge~vg~l~~---~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 194 NCVRYSPDGSRFATAGSDGKIYIYDG-KTGEKVGELED---SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred eeEEECCCCCeEEEecCCccEEEEcC-CCccEEEEecC---CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence 448999999999998 5899999999 59998888754 345789999999999999999999999999999987653
Q ss_pred ee-ecCCCCCCCce---eee----Eeeeeccc------------cccccccceEEEE--eecCCeEEEEecCCcEEEEec
Q 001567 102 SI-QIGGKQPSGLF---FIK----ISLVLNEQ------------LPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISW 159 (1052)
Q Consensus 102 ~~-~~~~~~~~~~~---~~~----~~~~~~~~------------~~~~~~~~~v~~i--~~d~~~llv~t~dg~v~~~~w 159 (1052)
.. ...+....++. +|. +.++..+. ..+.++...|+++ .++++.++.|+.||.|.. |
T Consensus 270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~--W 347 (603)
T KOG0318|consen 270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINS--W 347 (603)
T ss_pred EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEE--E
Confidence 21 11122122222 221 11222222 2234555666665 567789999999998865 7
Q ss_pred cCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccC---CCccEEEEEecCCcceEEEEeeCCcEEEEE
Q 001567 160 KGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP---ISSAIIWLELCLPMRLLFVLYSNGQLMSCS 236 (1052)
Q Consensus 160 d~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~ 236 (1052)
+........+... .+...+..+.-+..+++.+.+-+..++.+...+ .+..+.. ...+.. .+++.+||.+++..
T Consensus 348 ~~~~g~~~~~~g~-~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~--lg~QP~-~lav~~d~~~avv~ 423 (603)
T KOG0318|consen 348 DSGSGTSDRLAGK-GHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK--LGSQPK-GLAVLSDGGTAVVA 423 (603)
T ss_pred ecCCccccccccc-cccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceee--cCCCce-eEEEcCCCCEEEEE
Confidence 7555333322111 223333333333333343333222222222211 1112222 222222 46667777655555
Q ss_pred ecCCceeeeeecccceecCCC-CeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEE
Q 001567 237 VSKKGLKLAEFIKIDKELGSG-DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW 315 (1052)
Q Consensus 237 ~~d~~i~~w~~~~~~~~~gh~-~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~ 315 (1052)
..+.-+-+-+...... .... .+.|+|++|+++.+|+|++||.|+||.+.. +.+....... .|.++|+++++
T Consensus 424 ~~~~iv~l~~~~~~~~-~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g-~~l~ee~~~~------~h~a~iT~vay 495 (603)
T KOG0318|consen 424 CISDIVLLQDQTKVSS-IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG-DELKEEAKLL------EHRAAITDVAY 495 (603)
T ss_pred ecCcEEEEecCCccee-eccccccceEEEcCCCCEEEEecccceEEEEEecC-Ccccceeeee------cccCCceEEEE
Confidence 4443322222221111 1112 233899999999999999999999999986 4433322222 29999999999
Q ss_pred CCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCc-eEEEEecC
Q 001567 316 TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY-RLYAIEEG 391 (1052)
Q Consensus 316 SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~-~l~~~~~~ 391 (1052)
||||.+||+|...+.+.+||+.+......--..|++.|++++|+|+. ..+++|+ .+.+|+.+.. +.+.....
T Consensus 496 Spd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n----~~vATGSlDt~Viiysv~kP~~~i~iknA 571 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN----KLVATGSLDTNVIIYSVKKPAKHIIIKNA 571 (603)
T ss_pred CCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc----eEEEeccccceEEEEEccChhhheEeccc
Confidence 99999999999999999999998876433334458999999999998 8999998 8899998653 23445566
Q ss_pred CcccEEEEec--cceeeeeccCCceeeeEe
Q 001567 392 SSERVLIFSF--GKCCLNRGVSGMTYARQV 419 (1052)
Q Consensus 392 ~~~~v~~~s~--~k~~~s~s~d~~v~~w~~ 419 (1052)
|...|..+.+ ...+++.+.|..+++|.+
T Consensus 572 H~~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 572 HLGGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred cccCceeEEEecCceEEeccCcceeEEecc
Confidence 8777877777 678899999999999986
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=1.9e-27 Score=242.88 Aligned_cols=282 Identities=13% Similarity=0.155 Sum_probs=221.1
Q ss_pred hcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeE
Q 001567 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1052)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~l 145 (1052)
|.+.+.++-|++|++.|++++.||.+.|||.-+..+... +++...+.-.++++|.++.+
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~ha---------------------ipl~s~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHA---------------------IPLPSSWVMTCAYSPSGNFV 112 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeE---------------------EecCceeEEEEEECCCCCeE
Confidence 457889999999999999999999999999865543211 12333445567889999999
Q ss_pred EEEecCCcEEEEeccCcc-ccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEE
Q 001567 146 LLGLSDGSLYSISWKGEF-YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1052)
Q Consensus 146 lv~t~dg~v~~~~wd~~~-~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (1052)
++|+-|....+++..... .+.. .++..+.+|..++.++.|
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~-------------------------------~v~r~l~gHtgylScC~f-------- 153 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNV-------------------------------RVSRELAGHTGYLSCCRF-------- 153 (343)
T ss_pred EecCcCceeEEEecccccccccc-------------------------------eeeeeecCccceeEEEEE--------
Confidence 998888876666554221 1111 112234567778877665
Q ss_pred EEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcC-CCCEEEEEeeCCeEEEEecCCCCceeEEEEeec
Q 001567 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1052)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~sp-d~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (1052)
.+| ..+++++.|.+.-+||.++++.. .||.+-| +++++| +++.+++|+-|++.++||++. +.+.+++.+
T Consensus 154 --~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~g-- 227 (343)
T KOG0286|consen 154 --LDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEG-- 227 (343)
T ss_pred --cCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-cceeEeecc--
Confidence 444 45789999999999999998765 7999999 999999 999999999999999999998 899999998
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEeccc-ccCceeeeeEcCCCCCCccceeeeeeeeEE
Q 001567 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGTSMMQW 378 (1052)
Q Consensus 300 ~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~-~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W 378 (1052)
|...|++|+|.|+|..+|+|++|++.+++|+...+.+..+... -..+|++++||..
T Consensus 228 ------hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S----------------- 284 (343)
T KOG0286|consen 228 ------HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS----------------- 284 (343)
T ss_pred ------cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc-----------------
Confidence 9999999999999999999999999999999887666555421 0123333333332
Q ss_pred ecCCceEEEEecCCcccEEEEeccceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEE
Q 001567 379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (1052)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~v 458 (1052)
|+.+.+|..|.++.+||.+.++. ...+.||.+.|.++
T Consensus 285 -----------------------GRlLfagy~d~~c~vWDtlk~e~--------------------vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 285 -----------------------GRLLFAGYDDFTCNVWDTLKGER--------------------VGVLAGHENRVSCL 321 (343)
T ss_pred -----------------------ccEEEeeecCCceeEeeccccce--------------------EEEeeccCCeeEEE
Confidence 45556677788899999887765 45567999999999
Q ss_pred EEccCCCEEEEEeCCceE-EEE
Q 001567 459 AASKDGMFLAVAGLHGLI-LYD 479 (1052)
Q Consensus 459 a~SpdG~~lavag~dG~i-lwd 479 (1052)
..+|||.-|++|+-|.++ +|.
T Consensus 322 ~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 322 GVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EECCCCcEEEecchhHheeecC
Confidence 999999999999999998 884
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.2e-25 Score=228.81 Aligned_cols=277 Identities=16% Similarity=0.232 Sum_probs=222.9
Q ss_pred ccCCCccEEEEEecCCcceEEEEee-CCcEEEEEecCCceeeeeeccc--------ceecCCCCeE-EEEEcCCCCEEEE
Q 001567 204 KFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKI--------DKELGSGDAV-CASIAPEQQILAV 273 (1052)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~-dG~~~~~~~~d~~i~~w~~~~~--------~~~~gh~~~v-~va~spd~~~lAs 273 (1052)
+.++...|+.+.. .+ +-..++.++.|.++-+|+.... +.+.||++.| .++.++||++..+
T Consensus 11 l~gh~d~Vt~la~----------~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 11 LEGHTDWVTALAI----------KIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS 80 (315)
T ss_pred ecCCCceEEEEEe----------ecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe
Confidence 4456667777653 33 3457788888999989976532 2237999999 9999999999999
Q ss_pred EeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCce
Q 001567 274 GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 353 (1052)
Q Consensus 274 gs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v 353 (1052)
|+.||++|+||+.+ ++..+.+.+ |+..|.+++||||.+.+++|+.|+++++|++-|.......++.+.+.|
T Consensus 81 ~swD~~lrlWDl~~-g~~t~~f~G--------H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WV 151 (315)
T KOG0279|consen 81 ASWDGTLRLWDLAT-GESTRRFVG--------HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWV 151 (315)
T ss_pred ccccceEEEEEecC-CcEEEEEEe--------cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcE
Confidence 99999999999998 788889998 999999999999999999999999999999998765544444337899
Q ss_pred eeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccE--EEEec-cceeeeeccCCceeeeEeeecCceEE
Q 001567 354 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLL 427 (1052)
Q Consensus 354 ~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~ 427 (1052)
++++|+|+. ....+++++ ++++|+.++.++.....||+..+ +.+++ |..+++|+.|+...+||+..++.
T Consensus 152 scvrfsP~~--~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~--- 226 (315)
T KOG0279|consen 152 SCVRFSPNE--SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN--- 226 (315)
T ss_pred EEEEEcCCC--CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce---
Confidence 999999985 336788887 99999999999999999999888 67777 99999999999999999988765
Q ss_pred EEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceEEEEccCCcEE------EecCccceeeeEEEE
Q 001567 428 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR------VFGDITQEQKIQSKG 501 (1052)
Q Consensus 428 ~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~ilwd~~s~~w~------~f~~~~~e~~~~v~g 501 (1052)
..+++|+.+|++++|+|+.-.|+.|...+..+||+.+++.- ..+......+..|..
T Consensus 227 ------------------lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cls 288 (315)
T KOG0279|consen 227 ------------------LYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLS 288 (315)
T ss_pred ------------------eEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEE
Confidence 23567899999999999999999988888669999987631 122212223345788
Q ss_pred EEEe--CCEEEEEEEecCCCeEEEEEee
Q 001567 502 LLWL--GKIIVVCNYIDSSNTYELLFYP 527 (1052)
Q Consensus 502 l~W~--~~~li~~~~~~~~~~~elrly~ 527 (1052)
++|. |..|.++ | .+.-||+|.
T Consensus 289 laws~dG~tLf~g-~----td~~irv~q 311 (315)
T KOG0279|consen 289 LAWSADGQTLFAG-Y----TDNVIRVWQ 311 (315)
T ss_pred EEEcCCCcEEEee-e----cCCcEEEEE
Confidence 9998 6677776 3 334577774
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=7.2e-27 Score=267.53 Aligned_cols=238 Identities=18% Similarity=0.263 Sum_probs=211.5
Q ss_pred EEEEEecCCc--ceEEEEeeCCcEEEEEecCCceeeeeecccc----------------------------------eec
Q 001567 211 IIWLELCLPM--RLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----------------------------------KEL 254 (1052)
Q Consensus 211 i~~i~~~~~~--~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~----------------------------------~~~ 254 (1052)
|.-.+|.+.. -.++.|++|++++|+|..|..+++|.....+ .+.
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 3333444443 4788999999999999999999999765210 014
Q ss_pred CCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEE
Q 001567 255 GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (1052)
Q Consensus 255 gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~v 333 (1052)
||+++| .++|+|+.++|.++++|++||+|.+++ ..++-..++ |..||+++.|+|-|.++|||+.|++.++
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-~s~~V~y~G--------H~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKG--------HLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeeccc-ceeEEEecC--------CCcceeeEEecCCceEEEecCCCceeee
Confidence 899999 999999999999999999999999998 777777777 9999999999999999999999999999
Q ss_pred EEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccE--EEEec-cceeee
Q 001567 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLN 407 (1052)
Q Consensus 334 Wd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s 407 (1052)
|+.........+.+| .+.|.++.|+|+. .++++|+ ++++|+..+|..+....||.+.| ++|++ |+++++
T Consensus 520 Ws~d~~~PlRifagh-lsDV~cv~FHPNs----~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 520 WSTDHNKPLRIFAGH-LSDVDCVSFHPNS----NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eecccCCchhhhccc-ccccceEEECCcc----cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 999998888999998 8999999999999 9999998 99999999999999999999999 55666 999999
Q ss_pred eccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccC
Q 001567 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1052)
Q Consensus 408 ~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s 482 (1052)
|+.|+.+++||+..+.. ...+.+|.+.|.++.||.||..||+||.|..+ +||+..
T Consensus 595 g~ed~~I~iWDl~~~~~--------------------v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 595 GDEDGLIKIWDLANGSL--------------------VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cccCCcEEEEEcCCCcc--------------------hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 99999999999877664 56788999999999999999999999999999 999854
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=1.6e-26 Score=264.74 Aligned_cols=242 Identities=17% Similarity=0.221 Sum_probs=199.0
Q ss_pred ccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCe
Q 001567 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGV 279 (1052)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~ 279 (1052)
+.+|.++|.... |+||.+++++++.|+++++|...+..+. .||..+| ++.|+|.|-++|+|+.|++
T Consensus 447 L~GH~GPVyg~s----------FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 447 LYGHSGPVYGCS----------FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred eecCCCceeeee----------ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCce
Confidence 567888887755 5899999999999999999998876654 7999999 9999999999999999999
Q ss_pred EEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEc
Q 001567 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (1052)
Q Consensus 280 V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~s 359 (1052)
-++|..+. ..+++.+.+ |-+.|.|++|+|++.++|+||.|++|++||+.+|..+..+.|| .++|++++||
T Consensus 517 ArLWs~d~-~~PlRifag--------hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~al~~S 586 (707)
T KOG0263|consen 517 ARLWSTDH-NKPLRIFAG--------HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVTALAFS 586 (707)
T ss_pred eeeeeccc-CCchhhhcc--------cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceEEEEEc
Confidence 99999987 788888888 9999999999999999999999999999999999999999998 8999999999
Q ss_pred CCCCCCccceeeee---eeeEEecCCceEEEEecCCcccEEEEec---cceeeeeccCCceeeeEeeecCceEEE-----
Q 001567 360 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLV----- 428 (1052)
Q Consensus 360 p~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~~~~~~~l~~----- 428 (1052)
|+| .+++||+ .+++||..+++++....+|.+.|..++| +..+++++.|.++++||+.+......+
T Consensus 587 p~G----r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~ 662 (707)
T KOG0263|consen 587 PCG----RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHIST 662 (707)
T ss_pred CCC----ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccccccc
Confidence 999 9999998 8999999999999999999999966666 889999999999999998765432111
Q ss_pred EecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEE
Q 001567 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA 470 (1052)
Q Consensus 429 ~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lava 470 (1052)
+.+....... ....+..+|...+.||..+.|....-.+++|
T Consensus 663 ~~~~~~~~~~-~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 663 SNSAITQENN-ASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ccccccccCC-CCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 0000000000 0011223455556688888887655444444
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=8.3e-25 Score=222.60 Aligned_cols=277 Identities=17% Similarity=0.222 Sum_probs=216.9
Q ss_pred ecCCCCeE-EEEEcCC-CCEEEEEeeCCeEEEEecCCC----CceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEE
Q 001567 253 ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAES----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (1052)
Q Consensus 253 ~~gh~~~v-~va~spd-~~~lAsgs~Dg~V~vwd~~~~----~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~ 326 (1052)
+.+|.+.| .++..++ ...+.+++.|.++.+|++... |...+.+.+ |.-.|..+..++||++..+++
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G--------HsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG--------HSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec--------cceEecceEEccCCceEEecc
Confidence 37899999 9999887 678999999999999998642 445677777 999999999999999999999
Q ss_pred cCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCC-cccE--EEEe
Q 001567 327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS-SERV--LIFS 400 (1052)
Q Consensus 327 ~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~-~~~v--~~~s 400 (1052)
.|+++++||+.+++..+.+.+| ...|.+++|+|+. ..++||+ ++++|+.-+...+....+. .+.| +.|+
T Consensus 83 wD~~lrlWDl~~g~~t~~f~GH-~~dVlsva~s~dn----~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRFVGH-TKDVLSVAFSTDN----RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFS 157 (315)
T ss_pred ccceEEEEEecCCcEEEEEEec-CCceEEEEecCCC----ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEc
Confidence 9999999999999999999999 7889999999998 8999998 9999999887666665544 6777 5555
Q ss_pred c---cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-
Q 001567 401 F---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (1052)
Q Consensus 401 ~---~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i- 476 (1052)
| .-.+++++.|+++++|++.+-+- ...+.+|++.++.+++||||...|+||+||.+
T Consensus 158 P~~~~p~Ivs~s~DktvKvWnl~~~~l--------------------~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~ 217 (315)
T KOG0279|consen 158 PNESNPIIVSASWDKTVKVWNLRNCQL--------------------RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAM 217 (315)
T ss_pred CCCCCcEEEEccCCceEEEEccCCcch--------------------hhccccccccEEEEEECCCCCEEecCCCCceEE
Confidence 5 34789999999999999865443 57889999999999999999999999999999
Q ss_pred EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCC-C--CC---CcceeEEeecCCccEEE-
Q 001567 477 LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-H--LD---QSSLLCRKSLLAKPIVM- 549 (1052)
Q Consensus 477 lwd~~s~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~elrly~~~-~--ld---~~~~l~~~~~~~~~~~~- 549 (1052)
+||++.++. ++. -+....|..++...+....|.... ..|++|+.+ . .+ -........ ...|.++
T Consensus 218 LwdL~~~k~-lys---l~a~~~v~sl~fspnrywL~~at~----~sIkIwdl~~~~~v~~l~~d~~g~s~~-~~~~~cls 288 (315)
T KOG0279|consen 218 LWDLNEGKN-LYS---LEAFDIVNSLCFSPNRYWLCAATA----TSIKIWDLESKAVVEELKLDGIGPSSK-AGDPICLS 288 (315)
T ss_pred EEEccCCce-eEe---ccCCCeEeeEEecCCceeEeeccC----CceEEEeccchhhhhhccccccccccc-cCCcEEEE
Confidence 999998874 221 111123668888877655543322 349999884 1 11 111111010 1234444
Q ss_pred ---EeeCCEEEEEEcCCeEEEEEEE
Q 001567 550 ---DVYEDYILVTYRPFDVHIFHVK 571 (1052)
Q Consensus 550 ---s~~~~~llv~~~d~~i~l~~~~ 571 (1052)
+.+|..|+..+.|+.|++|.+.
T Consensus 289 laws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 289 LAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEcCCCcEEEeeecCCcEEEEEee
Confidence 4567889999999999999874
No 19
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.3e-23 Score=237.28 Aligned_cols=266 Identities=13% Similarity=0.192 Sum_probs=220.7
Q ss_pred EEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEe
Q 001567 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (1052)
Q Consensus 137 ~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~ 216 (1052)
+|.|....++++..+|.|+. ||-....-. .-..+|+++|+.++|
T Consensus 16 sFHP~rPwILtslHsG~IQl--WDYRM~tli----------------------------------~rFdeHdGpVRgv~F 59 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQL--WDYRMGTLI----------------------------------DRFDEHDGPVRGVDF 59 (1202)
T ss_pred ecCCCCCEEEEeecCceeee--ehhhhhhHH----------------------------------hhhhccCCccceeee
Confidence 55666778999999999998 543221111 113578888988775
Q ss_pred cCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCcee
Q 001567 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLI 292 (1052)
Q Consensus 217 ~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~ 292 (1052)
.|++.++++|++|..|++|+....+++ .||.+.| .+.|++...+|.++|.|.|||||+..+ ..++
T Consensus 60 ----------H~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-r~~i 128 (1202)
T KOG0292|consen 60 ----------HPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-RKCI 128 (1202)
T ss_pred ----------cCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-CceE
Confidence 778899999999999999998877665 8999999 999999999999999999999999998 8999
Q ss_pred EEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCe-----------------------------EEE
Q 001567 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-----------------------------LMS 343 (1052)
Q Consensus 293 ~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~-----------------------------l~~ 343 (1052)
..+.+ |.--|.|..|.|....++|||-|.+|+|||..|-+ ...
T Consensus 129 avltG--------HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 129 AVLTG--------HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH 200 (1202)
T ss_pred EEEec--------CceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence 99998 99999999999999999999999999999985311 123
Q ss_pred EecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEE--ecCCcccE--EEEec-cceeeeeccCCcee
Q 001567 344 TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI--EEGSSERV--LIFSF-GKCCLNRGVSGMTY 415 (1052)
Q Consensus 344 tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~--~~~~~~~v--~~~s~-~k~~~s~s~d~~v~ 415 (1052)
.+.|| ...|+-++|+|.. ..++||+ .+++|.....+.|-+ ..||.+.| +.|.+ ...++|.|.|++++
T Consensus 201 VLEGH-DRGVNwaAfhpTl----pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksir 275 (1202)
T KOG0292|consen 201 VLEGH-DRGVNWAAFHPTL----PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIR 275 (1202)
T ss_pred eeccc-ccccceEEecCCc----ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEE
Confidence 55666 7889999999987 8899998 899999888777754 46899988 55666 67889999999999
Q ss_pred eeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceEEEEccC
Q 001567 416 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQ 482 (1052)
Q Consensus 416 ~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~ilwd~~s 482 (1052)
+||+..... .+++.-.++..+.++.+|.++++|.|-..|.++|.+..
T Consensus 276 VwDm~kRt~--------------------v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 276 VWDMTKRTS--------------------VQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLER 322 (1202)
T ss_pred EEecccccc--------------------eeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcc
Confidence 999765433 45666678899999999999999988888888887753
No 20
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.6e-24 Score=219.53 Aligned_cols=278 Identities=12% Similarity=0.138 Sum_probs=215.0
Q ss_pred ecCCCCeE-EEEEcCC-CCEEEEEeeCCeEEEEecCCCC--ceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC
Q 001567 253 ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (1052)
Q Consensus 253 ~~gh~~~v-~va~spd-~~~lAsgs~Dg~V~vwd~~~~~--~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D 328 (1052)
..+|.+.+ .++|+|- |.+||+|+.|.+||+|+...+. .+...+.. +|+..|++++|||.|++||+|+.|
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-------~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-------GHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc-------cchheeeeeeecCCCcEEEEeecc
Confidence 47899999 9999998 9999999999999999987412 22333333 499999999999999999999999
Q ss_pred CcEEEEEcCCC--eEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecC---CceEEEEecCCcccE--EE
Q 001567 329 RGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY---GYRLYAIEEGSSERV--LI 398 (1052)
Q Consensus 329 g~v~vWd~~~~--~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~---~~~l~~~~~~~~~~v--~~ 398 (1052)
.++.||.-.++ +++.+|+|| .+.|.+++|+++| .+|++++ ++-+|... .+++..++++|...| +.
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGH-EnEVK~Vaws~sG----~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~ 157 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGH-ENEVKCVAWSASG----NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVI 157 (312)
T ss_pred ceEEEeecCCCceeEEeeeecc-ccceeEEEEcCCC----CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEE
Confidence 99999988755 567899999 8999999999999 9999998 67788764 467889999998888 66
Q ss_pred Eec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-
Q 001567 399 FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (1052)
Q Consensus 399 ~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i- 476 (1052)
+.| ...++|+|.|.++++|.-..+++ |. +.+++.+|+..|.+++|+++|..|++++.|+++
T Consensus 158 WHPt~dlL~S~SYDnTIk~~~~~~ddd--------------W~---c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 158 WHPTEDLLFSCSYDNTIKVYRDEDDDD--------------WE---CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVS 220 (312)
T ss_pred EcCCcceeEEeccCCeEEEEeecCCCC--------------ee---EEEEecCccceEEEEEecCCCceEEEecCCcceE
Confidence 666 67889999999999998654333 33 345677899999999999999999999999999
Q ss_pred EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCC-CCCCcce------eEEeecCCccEEE
Q 001567 477 LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSL------LCRKSLLAKPIVM 549 (1052)
Q Consensus 477 lwd~~s~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~elrly~~~-~ld~~~~------l~~~~~~~~~~~~ 549 (1052)
+|-..+ ....++.-.+-.+.|.++.|.++ .++..||+|... ..+.... -..+...-..+.-
T Consensus 221 Iw~~~~-------~~~~~~sr~~Y~v~W~~~~IaS~-----ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w 288 (312)
T KOG0645|consen 221 IWRLYT-------DLSGMHSRALYDVPWDNGVIASG-----GGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW 288 (312)
T ss_pred eeeecc-------CcchhcccceEeeeecccceEec-----cCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE
Confidence 998543 22223333455678886666666 566789999775 3332211 1112222234555
Q ss_pred Ee-eCCEEEEEEcCCeEEEEEEE
Q 001567 550 DV-YEDYILVTYRPFDVHIFHVK 571 (1052)
Q Consensus 550 s~-~~~~llv~~~d~~i~l~~~~ 571 (1052)
++ ..+.|+...+||.+.+|.++
T Consensus 289 ~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 289 NPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCCCceeecCCCceEEEEEec
Confidence 66 35667778899999999875
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=4.8e-26 Score=241.79 Aligned_cols=277 Identities=16% Similarity=0.191 Sum_probs=221.2
Q ss_pred cCccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEE--eecCCe
Q 001567 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKH 144 (1052)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~d~~~ 144 (1052)
.-++..|.|.|+|+.|++|+..|.+.+|+.. .+.+...+..++..|+++ +.++..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~-----------------------~fnFEtilQaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGT-----------------------SFNFETILQAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCc-----------------------eeeHHHHhhhhcccceeEEEccCCCE
Confidence 3456789999999999999999999999963 222333345556666665 456777
Q ss_pred EEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEE
Q 001567 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1052)
Q Consensus 145 llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (1052)
++.|..+|.|.. |+...+.... .-..+...|++++|
T Consensus 153 miSgD~gG~iKy--WqpnmnnVk~----------------------------------~~ahh~eaIRdlaf-------- 188 (464)
T KOG0284|consen 153 MISGDKGGMIKY--WQPNMNNVKI----------------------------------IQAHHAEAIRDLAF-------- 188 (464)
T ss_pred EEEcCCCceEEe--cccchhhhHH----------------------------------hhHhhhhhhheecc--------
Confidence 888888888876 7765533221 11234467877664
Q ss_pred EEeeCCcEEEEEecCCceeeeeecccce---ecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecC
Q 001567 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (1052)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~w~~~~~~~---~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~ 300 (1052)
+|+...++++++|+++++||...++. +.||.--| |++|+|...+||+|+.|..|++||.++ ++++.++.+
T Consensus 189 --SpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~tlh~--- 262 (464)
T KOG0284|consen 189 --SPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLATLHG--- 262 (464)
T ss_pred --CCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC-cchhhhhhh---
Confidence 77777889999999999999986643 37999888 999999999999999999999999998 999999988
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeeeeeeEEec
Q 001567 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDE 380 (1052)
Q Consensus 301 ~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~ 380 (1052)
|+..|..+.|+|+|++|+++|+|..++++|+...+.+.++++| ...|+++.++|-. +
T Consensus 263 -----HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H-kkdv~~~~WhP~~----~------------- 319 (464)
T KOG0284|consen 263 -----HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH-KKDVTSLTWHPLN----E------------- 319 (464)
T ss_pred -----ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc-hhhheeecccccc----c-------------
Confidence 9999999999999999999999999999999988888888988 6777777777754 1
Q ss_pred CCceEEEEecCCcccEEEEeccceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEE
Q 001567 381 YGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA 460 (1052)
Q Consensus 381 ~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~ 460 (1052)
..+++|+.|+.+..|.+...+. ++.--.+|...|+++++
T Consensus 320 ----------------------~lftsgg~Dgsvvh~~v~~~~p-------------------~~~i~~AHd~~iwsl~~ 358 (464)
T KOG0284|consen 320 ----------------------SLFTSGGSDGSVVHWVVGLEEP-------------------LGEIPPAHDGEIWSLAY 358 (464)
T ss_pred ----------------------cceeeccCCCceEEEecccccc-------------------ccCCCcccccceeeeec
Confidence 1334788888888888763222 23333478999999999
Q ss_pred ccCCCEEEEEeCCceE-EEEc
Q 001567 461 SKDGMFLAVAGLHGLI-LYDI 480 (1052)
Q Consensus 461 SpdG~~lavag~dG~i-lwd~ 480 (1052)
+|=|..||+|+.|.++ .|..
T Consensus 359 hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 359 HPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cccceeEeecCCCcceeeecc
Confidence 9999999999999999 8875
No 22
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=4e-23 Score=233.74 Aligned_cols=454 Identities=14% Similarity=0.147 Sum_probs=301.3
Q ss_pred EEEeeCCeEEEEE-cCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCcee
Q 001567 25 IYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (1052)
Q Consensus 25 v~fSpdg~llA~~-sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~ 103 (1052)
++-+||.-+||++ .|+.|+||+.. ....+..+. .|...++.+.|.-+|.+||+|+.|+.|.+||+-...-..
T Consensus 71 l~~~~d~l~lAVGYaDGsVqif~~~-s~~~~~tfn------gHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~ 143 (888)
T KOG0306|consen 71 LRSSDDILLLAVGYADGSVQIFSLE-SEEILITFN------GHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF 143 (888)
T ss_pred eeccCCcceEEEEecCceEEeeccC-CCceeeeec------ccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE
Confidence 4445778888998 69999999986 443333331 133457789999999999999999999999996443333
Q ss_pred ecCCCCCC--------------------CceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCcc
Q 001567 104 QIGGKQPS--------------------GLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEF 163 (1052)
Q Consensus 104 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~ 163 (1052)
...+|... ..-+|+++-..-+. ....+.+-+.+++.+++.+++++.++.+.+|...-+.
T Consensus 144 rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~-Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~ 222 (888)
T KOG0306|consen 144 RLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFE-THVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFED 222 (888)
T ss_pred EeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeee-EEecccceEEEEEEecceEEEEecCCceEEEEeeccc
Confidence 33343210 11223332211111 1123345567777778889999999988887652111
Q ss_pred cccee---ecc-------cCCCCccceeecc------------------------------------------------c
Q 001567 164 YGAFE---LVH-------SSNDSSVAALSHH------------------------------------------------F 185 (1052)
Q Consensus 164 ~~~~~---l~~-------~~~~~~~i~~i~~------------------------------------------------s 185 (1052)
....+ +.. .....-.+..+.. +
T Consensus 223 D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~ 302 (888)
T KOG0306|consen 223 DEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD 302 (888)
T ss_pred ccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence 10000 000 0000000000000 0
Q ss_pred CCCc----------------ceee---cC-CCCeeeccccCCCccEEEEEe------------------cCCcceEEEEe
Q 001567 186 PSNG----------------LASV---DT-SGAFVSDHKFPISSAIIWLEL------------------CLPMRLLFVLY 227 (1052)
Q Consensus 186 ~~~~----------------l~s~---~~-~~~~~~~~~~~~~~~i~~i~~------------------~~~~~~~~~~s 227 (1052)
.+.. +.+. .. .....-..+........++++ ++.....+++|
T Consensus 303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS 382 (888)
T KOG0306|consen 303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS 382 (888)
T ss_pred hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEee
Confidence 0000 0000 00 000000000111111122222 12222457778
Q ss_pred eCCcEEEEEecCCceeeeeeccccee--cCCCCeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCC
Q 001567 228 SNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (1052)
Q Consensus 228 ~dG~~~~~~~~d~~i~~w~~~~~~~~--~gh~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~ 305 (1052)
+|..++++++ .+.+++|+..+.++. .+.....|..|-|.++++++|..+|.+.+||+.. ..++.+.+.
T Consensus 383 ~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-~~l~Eti~A-------- 452 (888)
T KOG0306|consen 383 SDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLAS-ASLVETIRA-------- 452 (888)
T ss_pred cCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeeh-hhhhhhhhc--------
Confidence 8887777655 457999999877765 2333333999999999999999999999999987 777777777
Q ss_pred CCCCeeEEEECCCCCEEEEEEcCCcEEEEEcC------CCe-EE------EEecccccCceeeeeEcCCCCCCccceeee
Q 001567 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS------GCR-LM------STIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (1052)
Q Consensus 306 h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~------~~~-l~------~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg 372 (1052)
|.|.+++++-+|||+.+++||.|++|++||.. |.+ -+ .+|+- ...|.++.+|||+ .+++-|
T Consensus 453 HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel--~ddvL~v~~Spdg----k~LaVs 526 (888)
T KOG0306|consen 453 HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL--EDDVLCVSVSPDG----KLLAVS 526 (888)
T ss_pred cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec--cccEEEEEEcCCC----cEEEEE
Confidence 99999999999999999999999999999972 111 11 12221 4679999999999 888876
Q ss_pred e---eeeEEecCCceEEEEecCCcccEEEEe--c-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCc
Q 001567 373 T---SMMQWDEYGYRLYAIEEGSSERVLIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 446 (1052)
Q Consensus 373 ~---~~~~W~~~~~~l~~~~~~~~~~v~~~s--~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~ 446 (1052)
- +++++-.++-+.+..+.||.-+|.+++ + ++.++|+|.|.++++|-+..|+. ..
T Consensus 527 LLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC--------------------HK 586 (888)
T KOG0306|consen 527 LLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC--------------------HK 586 (888)
T ss_pred eccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh--------------------hh
Confidence 5 999999999999999999999996555 4 89999999999999999988886 67
Q ss_pred ccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecC-ccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEE
Q 001567 447 SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELL 524 (1052)
Q Consensus 447 ~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~-~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~elr 524 (1052)
.+.+|.+.|.++.|-|....+.++|.||.+ .||-.. ...+.. ..|..++-|..+.-.|++++++ +.++.||
T Consensus 587 S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k--Fe~iq~L~~H~~ev~cLav~~~G~~vvs~-----shD~sIR 659 (888)
T KOG0306|consen 587 SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK--FEEIQKLDGHHSEVWCLAVSPNGSFVVSS-----SHDKSIR 659 (888)
T ss_pred hhhcccCceeEEEEcccceeEEEecCcceEEeechhh--hhhheeeccchheeeeeEEcCCCCeEEec-----cCCceeE
Confidence 788999999999999999999999999999 998643 222221 1122223344555678899988 6778999
Q ss_pred EeeCC
Q 001567 525 FYPRY 529 (1052)
Q Consensus 525 ly~~~ 529 (1052)
+|.+.
T Consensus 660 lwE~t 664 (888)
T KOG0306|consen 660 LWERT 664 (888)
T ss_pred eeecc
Confidence 99884
No 23
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.4e-24 Score=240.79 Aligned_cols=353 Identities=14% Similarity=0.121 Sum_probs=259.4
Q ss_pred ccceEEEEe--ecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCC
Q 001567 131 KGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPIS 208 (1052)
Q Consensus 131 ~~~~v~~i~--~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~ 208 (1052)
+..+|.|+. |...-++++.-+|.|++|+.+...-
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm-------------------------------------------- 47 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM-------------------------------------------- 47 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEeccccee--------------------------------------------
Confidence 445666664 4455788899999999966553321
Q ss_pred ccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEe
Q 001567 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYD 284 (1052)
Q Consensus 209 ~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd 284 (1052)
|.+++.+......+.|-+-...+++|++|+.+++++..+.++. ..|.+-+ |++++|...++.++|.|-+|++||
T Consensus 48 --VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~ 125 (794)
T KOG0276|consen 48 --VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWD 125 (794)
T ss_pred --eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEee
Confidence 1122222222222344556778999999999999998887665 6899999 999999999999999999999999
Q ss_pred cCCCCceeEEEEeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCC
Q 001567 285 LAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 363 (1052)
Q Consensus 285 ~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp-Dg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~ 363 (1052)
.+....+.+++.+ |+--|.+++|.| |.+.+||++-|+||+||++....+..||.+| ...|+++.+-+.+
T Consensus 126 we~~wa~~qtfeG--------H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~g- 195 (794)
T KOG0276|consen 126 WENEWACEQTFEG--------HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGG- 195 (794)
T ss_pred ccCceeeeeEEcC--------cceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecc-ccCcceEEeccCC-
Confidence 9986788899998 999999999999 7889999999999999999999999999998 8899999998877
Q ss_pred CCccceeeee---eeeEEecCCceEEEEecCCcccE--EEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchh
Q 001567 364 CKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL 437 (1052)
Q Consensus 364 ~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~ 437 (1052)
++.+++||+ ++++||..+..++.++.||...| ..|.+ -..++|||.|||+++|...+-..
T Consensus 196 -dkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l------------- 261 (794)
T KOG0276|consen 196 -DKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL------------- 261 (794)
T ss_pred -CcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh-------------
Confidence 457899998 99999999999999999999998 55555 66889999999999998644322
Q ss_pred eeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceEEEEccCCcEEEecCccceeeeEEE-EEEEeCCEEEEE-EEe
Q 001567 438 KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSK-GLLWLGKIIVVC-NYI 515 (1052)
Q Consensus 438 ~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~ilwd~~s~~w~~f~~~~~e~~~~v~-gl~W~~~~li~~-~~~ 515 (1052)
-.++.-.-..|++++-.+.+..+|+|...|.+..++ +.+..--.|... .+.|.++.-|.+ ...
T Consensus 262 -------E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~l--------greeP~vsMd~~gKIiwa~~~ei~~~~~k 326 (794)
T KOG0276|consen 262 -------EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKL--------GREEPAVSMDSNGKIIWAVHSEIQAVNLK 326 (794)
T ss_pred -------hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEc--------cCCCCceeecCCccEEEEcCceeeeeece
Confidence 223333446799999999999999999999886554 333333334434 488876544433 221
Q ss_pred cCCCeEEEEEeeCCCCCCcceeEEeecCCccEEEEeeCCEEEEEEcCCeEEEEEE
Q 001567 516 DSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV 570 (1052)
Q Consensus 516 ~~~~~~elrly~~~~ld~~~~l~~~~~~~~~~~~s~~~~~llv~~~d~~i~l~~~ 570 (1052)
.-....++.=-.|-.|.-..+....-+| +.+..+|+|..++| +.||...||.-
T Consensus 327 s~~~~~ev~DgErL~LsvKeLgs~eiyP-q~L~hsPNGrfV~V-cgdGEyiIyTa 379 (794)
T KOG0276|consen 327 SVGAQKEVTDGERLPLSVKELGSVEIYP-QTLAHSPNGRFVVV-CGDGEYIIYTA 379 (794)
T ss_pred eccCcccccCCccccchhhhccccccch-HHhccCCCCcEEEE-ecCccEEEEEe
Confidence 1111112221111122222333233233 46778888777666 78999999964
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.93 E-value=3.2e-24 Score=219.34 Aligned_cols=278 Identities=16% Similarity=0.148 Sum_probs=220.9
Q ss_pred ccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeC
Q 001567 202 DHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRR 277 (1052)
Q Consensus 202 ~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~D 277 (1052)
..+.+|...|.+|.| ++|++.+++++.|+.+-+||..+..+. +-....| .+||+|.|+++|.|+-|
T Consensus 49 r~LkGH~~Ki~~~~w----------s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDW----------STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred EEecccccceeeeEe----------cCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcC
Confidence 446678888988886 788888998898988889998766443 3345678 99999999999999999
Q ss_pred CeEEEEecCCC--C---ceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCc
Q 001567 278 GVVELYDLAES--A---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS 352 (1052)
Q Consensus 278 g~V~vwd~~~~--~---~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~ 352 (1052)
+...||++.+. . ...+.+.+ |+|-+.|+.|-+|+ .|.+|+.|.+..+||+++++....+.|| ...
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~g--------HtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH-~gD 188 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAG--------HTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGH-TGD 188 (343)
T ss_pred ceeEEEecccccccccceeeeeecC--------ccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCC-ccc
Confidence 99999999752 1 23344555 99999999999865 6788999999999999999999999999 889
Q ss_pred eeeeeEcC-CCCCCccceeeee---eeeEEecCCceEEEEecCCcccE--EEEec-cceeeeeccCCceeeeEeeecCce
Q 001567 353 ISSPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDR 425 (1052)
Q Consensus 353 v~s~~~sp-~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~ 425 (1052)
|-++.++| ++ +.++||+ +.++||...+.+..+..+|...| +.|-| |..++||+.|++.+++|+..+.+
T Consensus 189 V~slsl~p~~~----ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~- 263 (343)
T KOG0286|consen 189 VMSLSLSPSDG----NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE- 263 (343)
T ss_pred EEEEecCCCCC----CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-
Confidence 99999999 55 8888887 89999999999999999999999 44444 88999999999999999876443
Q ss_pred EEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEE
Q 001567 426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW 504 (1052)
Q Consensus 426 l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W 504 (1052)
+.++.. ..-+.+|++++||..|++|..|..|.+. +||...++--. .-..||+-+.+.++.-
T Consensus 264 ~a~ys~-----------------~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg-~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 264 LAVYSH-----------------DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG-VLAGHENRVSCLGVSP 325 (343)
T ss_pred Eeeecc-----------------CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE-EeeccCCeeEEEEECC
Confidence 333321 1235689999999999999999999999 99987665321 1224566555656555
Q ss_pred eCCEEEEEEEecCCCeEEEEEee
Q 001567 505 LGKIIVVCNYIDSSNTYELLFYP 527 (1052)
Q Consensus 505 ~~~~li~~~~~~~~~~~elrly~ 527 (1052)
.|--+.++ +-+..+|+|.
T Consensus 326 DG~av~Tg-----SWDs~lriW~ 343 (343)
T KOG0286|consen 326 DGMAVATG-----SWDSTLRIWA 343 (343)
T ss_pred CCcEEEec-----chhHheeecC
Confidence 55555555 4457788884
No 25
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5e-24 Score=216.05 Aligned_cols=269 Identities=12% Similarity=0.231 Sum_probs=217.7
Q ss_pred CCCccEEEEEecCCcceEEEEeeC-CcEEEEEecCCceeeeeeccccee-------cCCCCeE-EEEEcCCCCEEEEEee
Q 001567 206 PISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAV-CASIAPEQQILAVGTR 276 (1052)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~d-G~~~~~~~~d~~i~~w~~~~~~~~-------~gh~~~v-~va~spd~~~lAsgs~ 276 (1052)
+++.++..+++ .|- |.++++++.|+.+++|+...+..+ .+|..+| .+||+|.|++||+||-
T Consensus 12 gh~~r~W~~aw----------hp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 12 GHKDRVWSVAW----------HPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred CCCCcEEEEEe----------ccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence 45556776665 444 889999999999999988743222 5799999 9999999999999999
Q ss_pred CCeEEEEecCCC-CceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCC---eEEEEecccccCc
Q 001567 277 RGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLSS 352 (1052)
Q Consensus 277 Dg~V~vwd~~~~-~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~---~l~~tl~~~~~~~ 352 (1052)
|+++.||.-.+. .+++.++.+ |...|.|++||++|++||++++|+.|-||.+... .+...|++| +..
T Consensus 82 D~t~~Iw~k~~~efecv~~lEG--------HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tqD 152 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEG--------HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQD 152 (312)
T ss_pred cceEEEeecCCCceeEEeeeec--------cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-ccc
Confidence 999999986541 267888888 9999999999999999999999999999999743 456678888 889
Q ss_pred eeeeeEcCCCCCCccceeeee---eeeEEecC---CceEEEEecCCcccEEEEec---cceeeeeccCCceeeeEeeecC
Q 001567 353 ISSPIVKPNQDCKYEPLMSGT---SMMQWDEY---GYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGE 423 (1052)
Q Consensus 353 v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~---~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~~~~~ 423 (1052)
|..+.|+|.. ..|+|++ ++++|.-+ ..++..++.+|.+.|+.+.| |..+++++.|+++++|....+-
T Consensus 153 VK~V~WHPt~----dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~ 228 (312)
T KOG0645|consen 153 VKHVIWHPTE----DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL 228 (312)
T ss_pred ccEEEEcCCc----ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc
Confidence 9999999988 8999988 99999765 34788999999999987777 7799999999999999865321
Q ss_pred ceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccC----CcEEEecCccceeeeE
Q 001567 424 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ----KKWRVFGDITQEQKIQ 498 (1052)
Q Consensus 424 ~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s----~~w~~f~~~~~e~~~~ 498 (1052)
+ .-|.+++..++|. ...+|+||.|+.+ +|.-.. ..|+++....+..+..
T Consensus 229 ---------------------~---~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~d 282 (312)
T KOG0645|consen 229 ---------------------S---GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVD 282 (312)
T ss_pred ---------------------c---hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccc
Confidence 1 2377899999998 4478999999999 997654 4677776554444456
Q ss_pred EEEEEEeC---CEEEEEEEecCCCeEEEEEeeC
Q 001567 499 SKGLLWLG---KIIVVCNYIDSSNTYELLFYPR 528 (1052)
Q Consensus 499 v~gl~W~~---~~li~~~~~~~~~~~elrly~~ 528 (1052)
|..+.|.. +.|++| +.+..+++|..
T Consensus 283 VNsV~w~p~~~~~L~s~-----~DDG~v~~W~l 310 (312)
T KOG0645|consen 283 VNSVQWNPKVSNRLASG-----GDDGIVNFWEL 310 (312)
T ss_pred cceEEEcCCCCCceeec-----CCCceEEEEEe
Confidence 77889974 566666 55688999864
No 26
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=3.1e-23 Score=234.59 Aligned_cols=308 Identities=13% Similarity=0.117 Sum_probs=235.0
Q ss_pred EEEEecCCcEEEEeccCccccc-e---e--ecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecC
Q 001567 145 MLLGLSDGSLYSISWKGEFYGA-F---E--LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL 218 (1052)
Q Consensus 145 llv~t~dg~v~~~~wd~~~~~~-~---~--l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~ 218 (1052)
-++...+.++..++.+... .. . . --..+.|...++.+.++.++.+..+++ +....+|.......|+.+.-.
T Consensus 337 ~lv~l~nNtv~~ysl~~s~-~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~- 413 (888)
T KOG0306|consen 337 TLVLLANNTVEWYSLENSG-KTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG- 413 (888)
T ss_pred eEEEeecCceEEEEeccCC-CCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc-
Confidence 3444677777766665411 11 0 0 001345666777777777775433332 334456666666777766532
Q ss_pred CcceEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCC----CCc
Q 001567 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE----SAS 290 (1052)
Q Consensus 219 ~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~----~~~ 290 (1052)
+..++.|-|.++++++|...|.+.++|....... ..|.+++ .++.+||++.+++|+.|.+|++||..- ++.
T Consensus 414 -y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 414 -YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred -cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 5567778899999999999999999988765432 6899999 999999999999999999999999642 111
Q ss_pred eeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCcccee
Q 001567 291 LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM 370 (1052)
Q Consensus 291 ~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~ 370 (1052)
..+.++...- -.-.-+..|.|+++||||++||++--|.+++|+-+.+-+..-+|-|| .-+|.++.+||++ ..++
T Consensus 493 ~~k~lsl~~~-rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGH-kLPV~smDIS~DS----kliv 566 (888)
T KOG0306|consen 493 QKKVLSLKHT-RTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH-KLPVLSMDISPDS----KLIV 566 (888)
T ss_pred cceeeeeccc-eEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccc-ccceeEEeccCCc----CeEE
Confidence 1111221100 00013677999999999999999999999999999999999999999 7899999999999 8999
Q ss_pred eee---eeeEEecCCceEEEEecCCcccEEEEec---cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeecc
Q 001567 371 SGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL 444 (1052)
Q Consensus 371 sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~ 444 (1052)
+|+ ++++|+.+=|.+-...-+|++.|..+.| .....|++.|+.++.||-..-+ .
T Consensus 567 TgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe--------------------~ 626 (888)
T KOG0306|consen 567 TGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE--------------------E 626 (888)
T ss_pred eccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh--------------------h
Confidence 998 8999999999998888899999966555 5577899999999999844322 2
Q ss_pred CcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccC
Q 001567 445 PVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1052)
Q Consensus 445 p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s 482 (1052)
.+++.+|...|++++.+|+|.+++++|.|..+ +|....
T Consensus 627 iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 627 IQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred heeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 56788999999999999999999999999999 998643
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=2.1e-25 Score=236.92 Aligned_cols=265 Identities=14% Similarity=0.208 Sum_probs=220.8
Q ss_pred EEEeeCCcEEEEEecCCceeeeeecccc---eecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeec
Q 001567 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID---KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~---~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (1052)
+..+|+||.+++++..|...+|++.... .++.|.++| ++.|++++.++++|..+|.|++|+... ..+..++.
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk~~~a-- 177 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVKIIQA-- 177 (464)
T ss_pred EEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhHHhhH--
Confidence 4458999999999999999999985432 237899999 999999999999999999999999764 33444444
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eee
Q 001567 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (1052)
Q Consensus 300 ~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~ 376 (1052)
.|+..|++++|||....++++++||+|+|||..-.+....|+||| -.|.++.++|.. ..++||+ .++
T Consensus 178 -----hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg-wdVksvdWHP~k----gLiasgskDnlVK 247 (464)
T KOG0284|consen 178 -----HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG-WDVKSVDWHPTK----GLIASGSKDNLVK 247 (464)
T ss_pred -----hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC-CCcceeccCCcc----ceeEEccCCceeE
Confidence 256999999999999999999999999999998888888889984 679999999987 7889988 899
Q ss_pred EEecCCceEEEEecCCcccEEEEec---cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCC
Q 001567 377 QWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (1052)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~ 453 (1052)
+||+.+++++.++.+|...|..+.| +..++|+|.|.++++.|+..-++ ..+|.+|..
T Consensus 248 lWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE--------------------l~~~r~Hkk 307 (464)
T KOG0284|consen 248 LWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE--------------------LFTYRGHKK 307 (464)
T ss_pred eecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH--------------------HHHhhcchh
Confidence 9999999999999999999977666 88999999999999999875554 568889999
Q ss_pred cEEEEEEccC-CCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEe--CCEEEEEEEecCCCeEEEEEeeCC
Q 001567 454 PVQHVAASKD-GMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (1052)
Q Consensus 454 ~V~~va~Spd-G~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~--~~~li~~~~~~~~~~~elrly~~~ 529 (1052)
.|++++|+|- ...+++||.||.+ +|.+-..+ -.+......+-.+..+.|+ |+++..| +++..+|+|.|.
T Consensus 308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil~tg-----snd~t~rfw~r~ 380 (464)
T KOG0284|consen 308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHILATG-----SNDRTVRFWTRN 380 (464)
T ss_pred hheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccceeEeec-----CCCcceeeeccC
Confidence 9999999995 6788899999999 99886221 1222222333447788896 6666665 778899999996
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.93 E-value=7.5e-24 Score=228.88 Aligned_cols=325 Identities=15% Similarity=0.155 Sum_probs=252.6
Q ss_pred hcCccceEEEcCCcc-EEEEEeCCcEEEEEEEEecCcee---ecCCCCCCCceeeeEeeeeccccccccccceEEEEee-
Q 001567 66 REGENLQAVWSPDTK-LIAVVTSSLYLHIFKVQITEKSI---QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS- 140 (1052)
Q Consensus 66 ~~G~~~~v~wSPDg~-~Lav~t~dg~l~i~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~- 140 (1052)
+..++...+|.|-.. .+|+++.+...++|++....... ....|. +. ..++-... ..-|++++.
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~--------~~--~~~~s~~~--nkdVT~L~Wn 244 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHC--------IR--EGGKSVPS--NKDVTSLDWN 244 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhh--------hh--hhcccCCc--cCCcceEEec
Confidence 456788999999777 99999999999999997422110 000010 00 00000001 123566665
Q ss_pred -cCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCC
Q 001567 141 -DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP 219 (1052)
Q Consensus 141 -d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~ 219 (1052)
+|..|++|..+|.+++|.-++.... .+..|+.+|.++.|
T Consensus 245 ~~G~~LatG~~~G~~riw~~~G~l~~-------------------------------------tl~~HkgPI~slKW--- 284 (524)
T KOG0273|consen 245 NDGTLLATGSEDGEARIWNKDGNLIS-------------------------------------TLGQHKGPIFSLKW--- 284 (524)
T ss_pred CCCCeEEEeecCcEEEEEecCchhhh-------------------------------------hhhccCCceEEEEE---
Confidence 4788999999999999765554422 13467888999887
Q ss_pred cceEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCe-EEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEE
Q 001567 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDA-VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (1052)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~-v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l 295 (1052)
+.+|.++++++-|+++-+||..++... .-|..+ +.|.|-.+ .-+|+.+.||.|+||.+.. ..++.++
T Consensus 285 -------nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~-~~P~~t~ 355 (524)
T KOG0273|consen 285 -------NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGE-DRPVKTF 355 (524)
T ss_pred -------cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecC-CCcceee
Confidence 678889999999999999999877543 345555 36777544 4588889999999999987 7888999
Q ss_pred EeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCC-----cccee
Q 001567 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK-----YEPLM 370 (1052)
Q Consensus 296 ~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~-----~~~l~ 370 (1052)
.+ |.++|++|.|.|.|.+|+++++|+|++||+.........+.+| ...+..+.++|++.-+ ..+++
T Consensus 356 ~G--------H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H-skei~t~~wsp~g~v~~n~~~~~~l~ 426 (524)
T KOG0273|consen 356 IG--------HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH-SKEIYTIKWSPTGPVTSNPNMNLMLA 426 (524)
T ss_pred ec--------ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh-ccceeeEeecCCCCccCCCcCCceEE
Confidence 98 9999999999999999999999999999999888888899988 7789999999998622 23455
Q ss_pred eee---eeeEEecCCceEEEEecCCcccEEEEec---cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeecc
Q 001567 371 SGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL 444 (1052)
Q Consensus 371 sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~ 444 (1052)
+.+ ++++|++..+.++.++..|+..|+.++| ++++++|+.|+.+++|....+..
T Consensus 427 sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l-------------------- 486 (524)
T KOG0273|consen 427 SASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL-------------------- 486 (524)
T ss_pred EeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe--------------------
Confidence 554 9999999999999999999999966666 89999999999999999877654
Q ss_pred CcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEcc
Q 001567 445 PVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (1052)
Q Consensus 445 p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~ 481 (1052)
...|.+ ++.|..++|+.+|.+|.++-.||.+ +-|++
T Consensus 487 ~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 487 VKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 344444 4559999999999999999999988 77763
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.92 E-value=1.2e-23 Score=227.35 Aligned_cols=316 Identities=15% Similarity=0.202 Sum_probs=223.5
Q ss_pred ceEEEEeeCCe-EEEEE-cCCcEEEeecCCcee---EEEEE----ecChhhhhhcCccceEEEcCCccEEEEEeCCcEEE
Q 001567 22 QQIIYFKVNNG-LLLIA-SPCHIELWSSSQHKV---RLGKY----KRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLH 92 (1052)
Q Consensus 22 ~~vv~fSpdg~-llA~~-sd~~v~IW~~~~~~~---~l~~~----~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~ 92 (1052)
.-+.+.+|-.. ++|+. .+.+.+||+.....- ....+ ....++....-.+++++|+.||+.||+|..+|.++
T Consensus 181 V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~r 260 (524)
T KOG0273|consen 181 VFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEAR 260 (524)
T ss_pred eEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEE
Confidence 34456677766 88888 477899999852100 00001 11112222334678999999999999999999999
Q ss_pred EEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeec--CCeEEEEecCCcEEEEeccCccccceeec
Q 001567 93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFELV 170 (1052)
Q Consensus 93 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d--~~~llv~t~dg~v~~~~wd~~~~~~~~l~ 170 (1052)
||+.+.... . .+..+.++|.++-.. +++|+.++.||++.+ ||..+....+..
T Consensus 261 iw~~~G~l~-~-----------------------tl~~HkgPI~slKWnk~G~yilS~~vD~ttil--wd~~~g~~~q~f 314 (524)
T KOG0273|consen 261 IWNKDGNLI-S-----------------------TLGQHKGPIFSLKWNKKGTYILSGGVDGTTIL--WDAHTGTVKQQF 314 (524)
T ss_pred EEecCchhh-h-----------------------hhhccCCceEEEEEcCCCCEEEeccCCccEEE--EeccCceEEEee
Confidence 999863221 1 123345566676554 567999999998876 665432222100
Q ss_pred ccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccc
Q 001567 171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI 250 (1052)
Q Consensus 171 ~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~ 250 (1052)
..+.....+++|-. ...|+.-++||.+.++-.+... ..
T Consensus 315 ----------------------------------~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~-------P~ 352 (524)
T KOG0273|consen 315 ----------------------------------EFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDR-------PV 352 (524)
T ss_pred ----------------------------------eeccCCccceEEec-CceEeecCCCceEEEEEecCCC-------cc
Confidence 01111122334411 1233445566666555433211 11
Q ss_pred ceecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCC---------CC
Q 001567 251 DKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD---------NS 320 (1052)
Q Consensus 251 ~~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpD---------g~ 320 (1052)
+...||.+.| ++.|+|.+.+||+++.|+|++||.... ....+.+.. |+..|..+.|||+ |.
T Consensus 353 ~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~--------Hskei~t~~wsp~g~v~~n~~~~~ 423 (524)
T KOG0273|consen 353 KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQA--------HSKEIYTIKWSPTGPVTSNPNMNL 423 (524)
T ss_pred eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC-Ccchhhhhh--------hccceeeEeecCCCCccCCCcCCc
Confidence 1237899999 999999999999999999999999877 667777887 9999999999996 45
Q ss_pred EEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccE-
Q 001567 321 AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV- 396 (1052)
Q Consensus 321 ~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v- 396 (1052)
.+|+++.|++|++||+..+.++++|..| ..+|.+++|+|++ .++++|+ .+.+|+..+++++....+ .+.|
T Consensus 424 ~l~sas~dstV~lwdv~~gv~i~~f~kH-~~pVysvafS~~g----~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~If 497 (524)
T KOG0273|consen 424 MLASASFDSTVKLWDVESGVPIHTLMKH-QEPVYSVAFSPNG----RYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIF 497 (524)
T ss_pred eEEEeecCCeEEEEEccCCceeEeeccC-CCceEEEEecCCC----cEEEecCCCCeeEeccccchheeEeecC-CCeEE
Confidence 8999999999999999999999999888 7899999999999 9999998 889999999999998876 4556
Q ss_pred -EEEec-cceeeeeccCCceeeeEee
Q 001567 397 -LIFSF-GKCCLNRGVSGMTYARQVI 420 (1052)
Q Consensus 397 -~~~s~-~k~~~s~s~d~~v~~w~~~ 420 (1052)
++++. +..+...-.|+.+.+-|++
T Consensus 498 el~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 498 ELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEcCCCCEEEEEecCCCceEEEec
Confidence 55555 6666666677887776653
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=8e-25 Score=227.26 Aligned_cols=256 Identities=11% Similarity=0.164 Sum_probs=211.8
Q ss_pred eeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCC
Q 001567 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (1052)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~ 302 (1052)
--|...+++|..|.|+++||.....+. .||++.| |+.+.. +.|++|+.|.||+|||+++ ++++.++-.
T Consensus 204 QYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~t-ge~l~tlih----- 275 (499)
T KOG0281|consen 204 QYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNT-GEPLNTLIH----- 275 (499)
T ss_pred EecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccC-CchhhHHhh-----
Confidence 345566889999999999998776543 7999999 998865 4999999999999999998 998888877
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCe---EEEEecccccCceeeeeEcCCCCCCccceeeee---eee
Q 001567 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (1052)
Q Consensus 303 ~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~---l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~ 376 (1052)
|...|..+.|+. .++++++.|++++|||+.... +...+.|| ...|+.+.|+. ++++|++ +++
T Consensus 276 ---HceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-rAaVNvVdfd~------kyIVsASgDRTik 343 (499)
T KOG0281|consen 276 ---HCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDFDD------KYIVSASGDRTIK 343 (499)
T ss_pred ---hcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhh-hhheeeecccc------ceEEEecCCceEE
Confidence 999999999984 599999999999999997653 34567788 78899988853 5666665 999
Q ss_pred EEecCCceEEEEecCCcccEEEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcE
Q 001567 377 QWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (1052)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V 455 (1052)
.|+..+++.+.++.||...|.++.+ ++.+++||.|.++++|++..|.. ...+.||..-|
T Consensus 344 vW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~c--------------------LRvLeGHEeLv 403 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC--------------------LRVLEGHEELV 403 (499)
T ss_pred EEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHH--------------------HHHHhchHHhh
Confidence 9999999999999999999999999 99999999999999999887765 66788999999
Q ss_pred EEEEEccCCCEEEEEeCCceE-EEEccCCcEEEe-c-----CccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeC
Q 001567 456 QHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF-G-----DITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (1052)
Q Consensus 456 ~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f-~-----~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~elrly~~ 528 (1052)
+++.| |.+.+++|+.||.+ +||++++.-..- . ....|....|.++.+..--+|++ +.+++|.+|++
T Consensus 404 RciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvss-----sHddtILiWdF 476 (499)
T KOG0281|consen 404 RCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISS-----SHDDTILIWDF 476 (499)
T ss_pred hheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEec-----cCCCeEEEEEc
Confidence 99999 57889999999999 999987642210 0 01123334566777776677776 66789999999
Q ss_pred C
Q 001567 529 Y 529 (1052)
Q Consensus 529 ~ 529 (1052)
.
T Consensus 477 l 477 (499)
T KOG0281|consen 477 L 477 (499)
T ss_pred C
Confidence 6
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=9.6e-25 Score=226.66 Aligned_cols=271 Identities=14% Similarity=0.212 Sum_probs=220.7
Q ss_pred ceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEE
Q 001567 133 LSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAII 212 (1052)
Q Consensus 133 ~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~ 212 (1052)
..|.|+..|.+.++.|+.|.+|.+ ||-..... ...+.+|.+.|.
T Consensus 198 kgVYClQYDD~kiVSGlrDnTiki--WD~n~~~c----------------------------------~~~L~GHtGSVL 241 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKI--WDKNSLEC----------------------------------LKILTGHTGSVL 241 (499)
T ss_pred CceEEEEecchhhhcccccCceEE--eccccHHH----------------------------------HHhhhcCCCcEE
Confidence 458899999999999999999998 55332111 123567888888
Q ss_pred EEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCC
Q 001567 213 WLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES 288 (1052)
Q Consensus 213 ~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~ 288 (1052)
++.| |.+++++|+.|.|+++||..+++++ .+|.++| .+.||. .++++++.|.+++|||+..+
T Consensus 242 CLqy------------d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 242 CLQY------------DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred eeec------------cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCc
Confidence 8876 5678999999999999999998775 6899999 999985 47999999999999999863
Q ss_pred C--ceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCc
Q 001567 289 A--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKY 366 (1052)
Q Consensus 289 ~--~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~ 366 (1052)
. .+.+.+.+ |...|+.+.|+ .+++++++.|++|++|++.++..+.++.+| ...+.++.+ .+
T Consensus 308 s~it~rrVLvG--------HrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gH-kRGIAClQY--r~---- 370 (499)
T KOG0281|consen 308 TDITLRRVLVG--------HRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGH-KRGIACLQY--RD---- 370 (499)
T ss_pred hHHHHHHHHhh--------hhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcc-cccceehhc--cC----
Confidence 3 23345556 99999999996 469999999999999999999999999998 666666555 23
Q ss_pred cceeeee---eeeEEecCCceEEEEecCCcccEEEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeee
Q 001567 367 EPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (1052)
Q Consensus 367 ~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~ 442 (1052)
.+++||+ ++++|+++.|.++..++||.+-|.++.| .+.+++|+.||++++|++..+.+.-... ..
T Consensus 371 rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~-----------~~ 439 (499)
T KOG0281|consen 371 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPA-----------ST 439 (499)
T ss_pred eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccc-----------cc
Confidence 7889998 9999999999999999999999988889 8899999999999999998776610000 00
Q ss_pred ccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 001567 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1052)
Q Consensus 443 ~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~ 483 (1052)
.+..+...|++.|..+.| |...+++++.|.++ +||...+
T Consensus 440 ~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 440 LCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred hHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 022355678999999999 56788899999999 9998664
No 32
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=2.9e-23 Score=244.90 Aligned_cols=268 Identities=17% Similarity=0.250 Sum_probs=221.3
Q ss_pred EEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEe
Q 001567 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (1052)
Q Consensus 137 ~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~ 216 (1052)
.|++++..++.++.++.+.++.+..... ... ..+.++...|.++.
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~---------------------------------~~l~~h~~~v~~~~- 210 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKS-NLL---------------------------------RELSGHTRGVSDVA- 210 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccc-hhh---------------------------------ccccccccceeeeE-
Confidence 5678888888888999998865532211 010 01134556677655
Q ss_pred cCCcceEEEEeeCCcEEEEEecCCceeeeeeccc-ce---ecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCce
Q 001567 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-DK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASL 291 (1052)
Q Consensus 217 ~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~-~~---~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~ 291 (1052)
++|||+++++++.|+++++|+.... .. +.||...| |++|+|+++++++|+.|++|+|||+.+ +++
T Consensus 211 ---------fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~ 280 (456)
T KOG0266|consen 211 ---------FSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GEC 280 (456)
T ss_pred ---------ECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeE
Confidence 5899999999999999999999433 22 37999999 999999999999999999999999998 899
Q ss_pred eEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCe--EEEEecccccC-ceeeeeEcCCCCCCccc
Q 001567 292 IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISLS-SISSPIVKPNQDCKYEP 368 (1052)
Q Consensus 292 ~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~--l~~tl~~~~~~-~v~s~~~sp~~~~~~~~ 368 (1052)
++++.+ |.++|++++|++||+.|++++.|+.|+|||+.++. +..++.++... .++++.|+|++ .+
T Consensus 281 ~~~l~~--------hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~----~~ 348 (456)
T KOG0266|consen 281 VRKLKG--------HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG----KY 348 (456)
T ss_pred EEeeec--------cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC----cE
Confidence 999998 99999999999999999999999999999999998 56777776334 69999999999 88
Q ss_pred eeeee---eeeEEecCCceEEEEecCCcccE---EEEe--c-cceeeeeccCCceeeeEeeecCceEEEEecCCcchhee
Q 001567 369 LMSGT---SMMQWDEYGYRLYAIEEGSSERV---LIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (1052)
Q Consensus 369 l~sg~---~~~~W~~~~~~l~~~~~~~~~~v---~~~s--~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w 439 (1052)
++++. ++++|+...+.......+|...+ .... . ++.+++++.|+.+.+|+...+..
T Consensus 349 ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~--------------- 413 (456)
T KOG0266|consen 349 LLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI--------------- 413 (456)
T ss_pred EEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccch---------------
Confidence 88776 89999999999999888887753 2222 1 88999999999999999876443
Q ss_pred eeeccCcccccC-CCcEEEEEEccCCCEEEEEe--CCceE-EEEcc
Q 001567 440 LHLNLPVSYISQ-NWPVQHVAASKDGMFLAVAG--LHGLI-LYDIR 481 (1052)
Q Consensus 440 ~~~~~p~~~~~h-~~~V~~va~SpdG~~lavag--~dG~i-lwd~~ 481 (1052)
...+.+| ...+..++++|...++++++ .|+.+ +|...
T Consensus 414 -----~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 414 -----LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred -----hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 5667788 88999999999999999999 78888 98753
No 33
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=5.5e-22 Score=222.27 Aligned_cols=325 Identities=14% Similarity=0.109 Sum_probs=219.6
Q ss_pred EEEEeeCCcEEEEEecCCceeeeeeccccee------cCCCCeE-EEEEcC------C-----CCEEEEEeeCCeEEEEe
Q 001567 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAV-CASIAP------E-----QQILAVGTRRGVVELYD 284 (1052)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~------~gh~~~v-~va~sp------d-----~~~lAsgs~Dg~V~vwd 284 (1052)
.+.|.+....+.+..+|..+-+||.....+. .-|...| .+..-| . ...+.+++.|||||+|+
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~ 408 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWD 408 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEee
Confidence 3455666677777788888888988765442 2355544 443322 1 12478999999999999
Q ss_pred cCCCCceeEEEEe-------ecCCC----------------------CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 001567 285 LAESASLIRTVSL-------YDWGY----------------------SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1052)
Q Consensus 285 ~~~~~~~~~~l~~-------~~~~~----------------------~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd 335 (1052)
++. +..-.++.. ...+| ..+..-++.+++.||||++||+|..-|+++|++
T Consensus 409 l~~-ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 409 LAF-CTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred ccc-ccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence 975 211111000 00011 113455699999999999999999999999999
Q ss_pred cCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEec-CCceEEEEecCCcccEEEEec---c--ceee
Q 001567 336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE-YGYRLYAIEEGSSERVLIFSF---G--KCCL 406 (1052)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~-~~~~l~~~~~~~~~~v~~~s~---~--k~~~ 406 (1052)
+..-+.++..+.| .+.|.++.++... .....++|++ -+.++|. ..|.+..+..+|...|..+.| + ..++
T Consensus 488 Lq~l~~~~~~eAH-esEilcLeyS~p~-~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 488 LQELEYTCFMEAH-ESEILCLEYSFPV-LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred ehhhhhhhheecc-cceeEEEeecCch-hhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence 9998899999888 8899999998542 3447888888 5667886 467888899999999987777 2 5677
Q ss_pred eeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcE
Q 001567 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (1052)
Q Consensus 407 s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w 485 (1052)
+.+.|..+.........+..+..++ +-......+..+++.|.-++++++++|..| +|+++++|-
T Consensus 566 scGADksimFr~~qk~~~g~~f~r~---------------t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 566 SCGADKSIMFRVNQKASSGRLFPRH---------------TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred eccCchhhheehhccccCceecccc---------------ccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence 8888888765544333322111111 111123458889999999999999999999 999999986
Q ss_pred E-Eec-CccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCC--CCCCcceeEEeecCCccEEEEeeCCEEEEEEc
Q 001567 486 R-VFG-DITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYR 561 (1052)
Q Consensus 486 ~-~f~-~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~elrly~~~--~ld~~~~l~~~~~~~~~~~~s~~~~~llv~~~ 561 (1052)
+ .|. ...+|.+..-..+.-.+.|+++.|.+ ..|-+|++. ..-.....+.+-+ +-+-+..+-.+|+.++.
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd-----ktl~~~Df~sgEcvA~m~GHsE~V--TG~kF~nDCkHlISvsg 703 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSD-----KTLCFVDFVSGECVAQMTGHSEAV--TGVKFLNDCKHLISVSG 703 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEEeecC-----CceEEEEeccchhhhhhcCcchhe--eeeeecccchhheeecC
Confidence 4 564 33444544444566677788776443 567777774 2222223332211 12345556678888999
Q ss_pred CCeEEEEEEEE
Q 001567 562 PFDVHIFHVKL 572 (1052)
Q Consensus 562 d~~i~l~~~~~ 572 (1052)
|+.|-+|++..
T Consensus 704 DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 704 DGCIFVWKLPL 714 (1080)
T ss_pred CceEEEEECch
Confidence 99999998853
No 34
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=5e-23 Score=242.93 Aligned_cols=268 Identities=15% Similarity=0.224 Sum_probs=215.5
Q ss_pred EEEEeeCCcEEEEEecCCceeeeeecccc--e---ecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEE
Q 001567 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKID--K---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS 296 (1052)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~w~~~~~~--~---~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~ 296 (1052)
++.|++||+.+++++.++.+++|+....+ . ..+|...| +++|+|+++++++|+.|++|++||+...+..+++++
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~ 243 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK 243 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec
Confidence 36789999999999999999999884443 1 26899999 999999999999999999999999955468889999
Q ss_pred eecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---
Q 001567 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (1052)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--- 373 (1052)
+ |+..|++++|+|+|+.+++|+.|++|+|||+.++.+...+.+| ...|++++|++++ ..+++++
T Consensus 244 g--------H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h-s~~is~~~f~~d~----~~l~s~s~d~ 310 (456)
T KOG0266|consen 244 G--------HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH-SDGISGLAFSPDG----NLLVSASYDG 310 (456)
T ss_pred C--------CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc-CCceEEEEECCCC----CEEEEcCCCc
Confidence 8 9999999999999999999999999999999999999999999 7899999999999 8888887
Q ss_pred eeeEEecCCce--EEEEecCCccc--E--EEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCc
Q 001567 374 SMMQWDEYGYR--LYAIEEGSSER--V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 446 (1052)
Q Consensus 374 ~~~~W~~~~~~--l~~~~~~~~~~--v--~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~ 446 (1052)
.+++||..+++ +.....++... + ++|++ ++.+++++.|+++++|++..+.. +.
T Consensus 311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~--------------------~~ 370 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS--------------------VG 370 (456)
T ss_pred cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc--------------------ee
Confidence 89999999998 45555555444 4 66666 99999999999999999876654 55
Q ss_pred ccccCCC---cEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEe--CCEEEEEEEecCCCe
Q 001567 447 SYISQNW---PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNT 520 (1052)
Q Consensus 447 ~~~~h~~---~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~--~~~li~~~~~~~~~~ 520 (1052)
.+.+|.. .+.+...+++|+++.+|+.|+.+ +|+..++.-..-. +.+- .-.+..+.|. .++++.+.+ ..+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l-~~h~-~~~~~~~~~~~~~~~~~s~s~---~~d 445 (456)
T KOG0266|consen 371 TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL-EGHS-KAAVSDLSSHPTENLIASSSF---EGD 445 (456)
T ss_pred eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh-cCCC-CCceeccccCCCcCeeeecCc---CCC
Confidence 6666665 34455668899999999999999 9999875422111 1110 1235566775 444444422 355
Q ss_pred EEEEEeeC
Q 001567 521 YELLFYPR 528 (1052)
Q Consensus 521 ~elrly~~ 528 (1052)
..+++|..
T Consensus 446 ~~~~~w~~ 453 (456)
T KOG0266|consen 446 GLIRLWKY 453 (456)
T ss_pred ceEEEecC
Confidence 67888865
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=7.4e-24 Score=222.53 Aligned_cols=253 Identities=13% Similarity=0.112 Sum_probs=211.6
Q ss_pred EEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeec
Q 001567 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (1052)
+.+.|+-...++++.|.++++||..+++.. .||.+++ .++|+..|+++|+++.|-.+++||.++..++++.+.+
T Consensus 114 v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g-- 191 (406)
T KOG0295|consen 114 VIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG-- 191 (406)
T ss_pred eeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcC--
Confidence 445777788888899999999999888654 8999999 9999999999999999999999999864567777777
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eee
Q 001567 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (1052)
Q Consensus 300 ~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~ 376 (1052)
|.-.|.+++|-|-|.+++|+++|.+|+.|++.++-++.++.+| ...|..++...|| ..++|++ ++.
T Consensus 192 ------h~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h-~ewvr~v~v~~DG----ti~As~s~dqtl~ 260 (406)
T KOG0295|consen 192 ------HEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH-SEWVRMVRVNQDG----TIIASCSNDQTLR 260 (406)
T ss_pred ------cccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc-hHhEEEEEecCCe----eEEEecCCCceEE
Confidence 9999999999999999999999999999999999999999999 6799999999998 8899888 899
Q ss_pred EEecCCceEEEEecCCcccEEEEec-------------c-----ceeeeeccCCceeeeEeeecCceEEEEecCCcchhe
Q 001567 377 QWDEYGYRLYAIEEGSSERVLIFSF-------------G-----KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (1052)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~s~-------------~-----k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~ 438 (1052)
+|-.++.++.....+|.-.|-+.++ + ..+.+++.|+++++|++.++..
T Consensus 261 vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c-------------- 326 (406)
T KOG0295|consen 261 VWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC-------------- 326 (406)
T ss_pred EEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE--------------
Confidence 9999999777777777655522221 2 4788999999999999988754
Q ss_pred eeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEe--CCEEEEE
Q 001567 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVC 512 (1052)
Q Consensus 439 w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~--~~~li~~ 512 (1052)
..++.+|...|+.++|+|-|+||+++..|+++ +||+++++.-.--+ .+|. .|..+... ..++++|
T Consensus 327 ------L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~h--fvt~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 327 ------LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AHEH--FVTSLDFHKTAPYVVTG 394 (406)
T ss_pred ------EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CCcc--eeEEEecCCCCceEEec
Confidence 56788999999999999999999999999999 99999987543222 3333 34444443 4466766
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=202.63 Aligned_cols=278 Identities=12% Similarity=0.196 Sum_probs=209.9
Q ss_pred eEEEEEc-CCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCC
Q 001567 32 GLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQP 110 (1052)
Q Consensus 32 ~llA~~s-d~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~ 110 (1052)
-+||+++ |.+|++|.+. .+.-..+..- ..+.+..+...||+++||+++.. .||+||+.++.+.
T Consensus 11 viLvsA~YDhTIRfWqa~-tG~C~rTiqh------~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~-------- 74 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQAL-TGICSRTIQH------PDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN-------- 74 (311)
T ss_pred eEEEeccCcceeeeeehh-cCeEEEEEec------CccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC--------
Confidence 4788886 8899999985 5543332211 14667899999999999998765 7999999865431
Q ss_pred CCceeeeEeeeeccccccccc--cceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCC
Q 001567 111 SGLFFIKISLVLNEQLPFAEK--GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN 188 (1052)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~--~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~ 188 (1052)
++.++ .++ ...+..|.++|..++.|+.||++++|+... ....
T Consensus 75 ---Pv~t~----------e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~--~~~q--------------------- 118 (311)
T KOG0315|consen 75 ---PVATF----------EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS--LSCQ--------------------- 118 (311)
T ss_pred ---ceeEE----------eccCCceEEEEEeecCeEEEecCCCceEEEEeccC--cccc---------------------
Confidence 11111 122 223446788999999999999999854332 1111
Q ss_pred cceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee----cCCCCeE-EEE
Q 001567 189 GLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CAS 263 (1052)
Q Consensus 189 ~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~----~gh~~~v-~va 263 (1052)
-.+.+.++|.++. ..|+..-++++-.++.|++||.....+. +.-..++ +++
T Consensus 119 --------------R~~~~~spVn~vv----------lhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~ 174 (311)
T KOG0315|consen 119 --------------RNYQHNSPVNTVV----------LHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLT 174 (311)
T ss_pred --------------hhccCCCCcceEE----------ecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEE
Confidence 0123445666544 5677777888888899999998765332 3445667 999
Q ss_pred EcCCCCEEEEEeeCCeEEEEecCCCC-----ceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCC
Q 001567 264 IAPEQQILAVGTRRGVVELYDLAESA-----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (1052)
Q Consensus 264 ~spd~~~lAsgs~Dg~V~vwd~~~~~-----~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~ 338 (1052)
+.|||+.++.+-.-|+..+|++-... .++.+++. |++-+..+.+|||+++||+++.|++++||+..+
T Consensus 175 v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a--------h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 175 VMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA--------HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred EcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec--------ccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 99999999999999999999986521 23445555 999999999999999999999999999999998
Q ss_pred C-eEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccEEE
Q 001567 339 C-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI 398 (1052)
Q Consensus 339 ~-~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~ 398 (1052)
. ++..++.+| ...+..++||.++ +++++|+ +.++|++..++.+....||....++
T Consensus 247 ~~kle~~l~gh-~rWvWdc~FS~dg----~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc 305 (311)
T KOG0315|consen 247 FFKLELVLTGH-QRWVWDCAFSADG----EYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVC 305 (311)
T ss_pred ceeeEEEeecC-CceEEeeeeccCc----cEEEecCCCCceeecccccCceeeecCCcccccEE
Confidence 7 666778887 7899999999999 9999998 8999999999988888887655444
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.91 E-value=6e-23 Score=214.60 Aligned_cols=274 Identities=11% Similarity=0.165 Sum_probs=219.6
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~ 332 (1052)
.||.+.| |+++.|-.+++|+|+.|++++|||+.+ +++..++.+ |...|..+++|+-..+++++++|+.|+
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltG--------hi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTG--------HIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecc--------hhheeeeeeecccCceEEEecCCCeeE
Confidence 7999999 999999999999999999999999998 988888888 999999999999999999999999999
Q ss_pred EEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccEE--EEec-cceee
Q 001567 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCL 406 (1052)
Q Consensus 333 vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~--~~s~-~k~~~ 406 (1052)
.||+...+.+....|| .+.|.++..+|.. +.+++|+ ++++||..+..-+.++.||...|. .+.+ ..+++
T Consensus 219 CwDLe~nkvIR~YhGH-lS~V~~L~lhPTl----dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi 293 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGH-LSGVYCLDLHPTL----DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI 293 (460)
T ss_pred EEechhhhhHHHhccc-cceeEEEeccccc----eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence 9999999999999898 8999999999988 8888887 899999999999999999999984 3444 66899
Q ss_pred eeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceEEEEccCCcEE
Q 001567 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR 486 (1052)
Q Consensus 407 s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~ilwd~~s~~w~ 486 (1052)
|+|.|+++++||+..+.. ..++..|+-.|++++.+|....+|+||.|..-.|++..|..
T Consensus 294 t~S~D~tvrlWDl~agkt--------------------~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f- 352 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKT--------------------MITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEF- 352 (460)
T ss_pred EecCCceEEEeeeccCce--------------------eEeeecccceeeEEecCCchhhhhccCCccceeccCCccch-
Confidence 999999999999998877 34566799999999999999999999999977999877652
Q ss_pred EecCccceeeeEEEEEEEe-CCEEEEEEEecCCCeEEEEEeeCCCCCCcceeEEeecCC-----ccEEEEee---CCEEE
Q 001567 487 VFGDITQEQKIQSKGLLWL-GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLA-----KPIVMDVY---EDYIL 557 (1052)
Q Consensus 487 ~f~~~~~e~~~~v~gl~W~-~~~li~~~~~~~~~~~elrly~~~~ld~~~~l~~~~~~~-----~~~~~s~~---~~~ll 557 (1052)
..|.. ++.-.+..+.-+ ++++++| +....+-+|+...-.+.+.+.+...|. .-+..+++ +..|+
T Consensus 353 -~~nls-gh~~iintl~~nsD~v~~~G-----~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 353 -LQNLS-GHNAIINTLSVNSDGVLVSG-----GDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred -hhccc-cccceeeeeeeccCceEEEc-----CCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence 23322 222234455554 5566766 444678888775222222222222222 12233333 44577
Q ss_pred EEEcCCeEEEEE
Q 001567 558 VTYRPFDVHIFH 569 (1052)
Q Consensus 558 v~~~d~~i~l~~ 569 (1052)
..-+|.+|++|+
T Consensus 426 t~eadKtIk~~k 437 (460)
T KOG0285|consen 426 TGEADKTIKMYK 437 (460)
T ss_pred eccCCcceEEEe
Confidence 788899999984
No 38
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.91 E-value=5.9e-23 Score=205.58 Aligned_cols=225 Identities=16% Similarity=0.195 Sum_probs=183.1
Q ss_pred EeeCCcEEEEEecCCceeeeeecccce-----ecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeec
Q 001567 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1052)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~~~~~-----~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (1052)
++||++.+++++.. .++++|..+... ..+|.+-| .+.|.-+|+++.+|++||++||||++. ..+-+.++
T Consensus 48 iTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-~~~qR~~~--- 122 (311)
T KOG0315|consen 48 ITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-LSCQRNYQ--- 122 (311)
T ss_pred EcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC-cccchhcc---
Confidence 68999988876654 589998876543 26898888 999999999999999999999999987 44444443
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eee
Q 001567 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (1052)
Q Consensus 300 ~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~ 376 (1052)
|..+|+++...|+-.-|++|..+|.|+|||+....+.+.+-......+.++...|+| .+++.+. +..
T Consensus 123 ------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg----sml~a~nnkG~cy 192 (311)
T KOG0315|consen 123 ------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG----SMLAAANNKGNCY 192 (311)
T ss_pred ------CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC----cEEEEecCCccEE
Confidence 789999999999999999999999999999988877776654435679999999998 7776554 788
Q ss_pred EEecCCce------EEEEecCCcccE--EEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcc
Q 001567 377 QWDEYGYR------LYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (1052)
Q Consensus 377 ~W~~~~~~------l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~ 447 (1052)
+|+.-+.+ .+.....|...+ ..+++ +|.++++|.|.++++|....- - +.-..
T Consensus 193 vW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~------------------kle~~ 253 (311)
T KOG0315|consen 193 VWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-F------------------KLELV 253 (311)
T ss_pred EEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-e------------------eeEEE
Confidence 99875532 233345677777 56677 999999999999999986432 1 12345
Q ss_pred cccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 001567 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1052)
Q Consensus 448 ~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~ 484 (1052)
+.+|+..+..++||.||+||++|+.|+++ +|++..++
T Consensus 254 l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 254 LTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred eecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 67899999999999999999999999999 99998876
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.90 E-value=8e-22 Score=249.66 Aligned_cols=229 Identities=12% Similarity=0.133 Sum_probs=177.3
Q ss_pred eCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcC-CCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCC
Q 001567 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (1052)
Q Consensus 228 ~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~sp-d~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~ 302 (1052)
+++.++++++.|+++++||..+++.. .+|.+.| +++|+| ++.+|++|+.||+|++||+.+ +..+.++..
T Consensus 543 ~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~~~----- 616 (793)
T PLN00181 543 YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGTIKT----- 616 (793)
T ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEEEec-----
Confidence 35778889999999999998765433 6899999 999997 789999999999999999987 666766654
Q ss_pred CCCCCCCeeEEEEC-CCCCEEEEEEcCCcEEEEEcCCCe-EEEEecccccCceeeeeEcCCCCCCccceeeee---eeeE
Q 001567 303 SMDDTGPVSCIAWT-PDNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQ 377 (1052)
Q Consensus 303 ~~~h~g~V~~l~~S-pDg~~Lasg~~Dg~v~vWd~~~~~-l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~ 377 (1052)
...|.+++|+ ++|..||+|+.||.|++||+.... ...++.+| ...|+++.|. ++ ..+++++ ++++
T Consensus 617 ----~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h-~~~V~~v~f~-~~----~~lvs~s~D~~iki 686 (793)
T PLN00181 617 ----KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH-SKTVSYVRFV-DS----STLVSSSTDNTLKL 686 (793)
T ss_pred ----CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC-CCCEEEEEEe-CC----CEEEEEECCCEEEE
Confidence 3679999995 579999999999999999997654 46777777 6789999996 34 5677775 8999
Q ss_pred EecCC------ceEEEEecCCcccE--EEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccC-cc
Q 001567 378 WDEYG------YRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VS 447 (1052)
Q Consensus 378 W~~~~------~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p-~~ 447 (1052)
|+... ...+....+|...+ +.+++ ++.+++++.|+++++|+....... ....... ...++ ..
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~-~s~~~~~-------~~~~~~~~ 758 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV-LSYKFKT-------IDPVSGLE 758 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce-EEEeccc-------CCcccccc
Confidence 99863 35667778888766 55666 889999999999999996543211 1000000 00001 11
Q ss_pred cccCCCcEEEEEEccCCCEEEEEeCCceE-EEEc
Q 001567 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1052)
Q Consensus 448 ~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~ 480 (1052)
...|...|++++|+|+|..|++|+.+|.+ +|++
T Consensus 759 ~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 759 VDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 23466789999999999999999999999 9986
No 40
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.90 E-value=1.7e-21 Score=213.33 Aligned_cols=275 Identities=20% Similarity=0.267 Sum_probs=200.5
Q ss_pred hcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceE--EEEeecCC
Q 001567 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNK 143 (1052)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~d~~ 143 (1052)
+.+++.+++|+||++.|++++.+|.+++|++..+........+ ...+ ..+.++++
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-----------------------~~~i~~~~~~~~~~ 64 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-----------------------TGPVRDVAASADGT 64 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC-----------------------CcceeEEEECCCCC
Confidence 4577889999999999999999999999999754321111111 1112 23445566
Q ss_pred eEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceE
Q 001567 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1052)
Q Consensus 144 ~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (1052)
.+++++.+|.+.+|+.+... .. .....+...+.++.+
T Consensus 65 ~l~~~~~~~~i~i~~~~~~~--~~----------------------------------~~~~~~~~~i~~~~~------- 101 (289)
T cd00200 65 YLASGSSDKTIRLWDLETGE--CV----------------------------------RTLTGHTSYVSSVAF------- 101 (289)
T ss_pred EEEEEcCCCeEEEEEcCccc--ce----------------------------------EEEeccCCcEEEEEE-------
Confidence 88888989999886655321 11 001123334655554
Q ss_pred EEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeec
Q 001567 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (1052)
+++++++++++.++.+.+|+....+.. .+|.+.+ +++|+|++.++++|+.||.|++||+.. ++.+..+..
T Consensus 102 ---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~-- 175 (289)
T cd00200 102 ---SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT-GKCVATLTG-- 175 (289)
T ss_pred ---cCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc-cccceeEec--
Confidence 667788887777889999998754332 5688888 999999999999999899999999986 676777776
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeeeeeeEEe
Q 001567 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD 379 (1052)
Q Consensus 300 ~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~ 379 (1052)
|.+.|.+++|+|+|+.+++++.|+.+++||+..+.....+..| ...+.++.++|++ ..
T Consensus 176 ------~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~----~~----------- 233 (289)
T cd00200 176 ------HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH-ENGVNSVAFSPDG----YL----------- 233 (289)
T ss_pred ------CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc-CCceEEEEEcCCC----cE-----------
Confidence 8889999999999999999999999999999987777776555 3455555555543 22
Q ss_pred cCCceEEEEecCCcccEEEEeccceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEE
Q 001567 380 EYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVA 459 (1052)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va 459 (1052)
+++++.++.+++|++..+.. ...+..|..+|.+++
T Consensus 234 -------------------------~~~~~~~~~i~i~~~~~~~~--------------------~~~~~~~~~~i~~~~ 268 (289)
T cd00200 234 -------------------------LASGSEDGTIRVWDLRTGEC--------------------VQTLSGHTNSVTSLA 268 (289)
T ss_pred -------------------------EEEEcCCCcEEEEEcCCcee--------------------EEEccccCCcEEEEE
Confidence 23344566777777654322 223346778899999
Q ss_pred EccCCCEEEEEeCCceE-EEE
Q 001567 460 ASKDGMFLAVAGLHGLI-LYD 479 (1052)
Q Consensus 460 ~SpdG~~lavag~dG~i-lwd 479 (1052)
|+|+|+++++++.||.+ +|+
T Consensus 269 ~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 269 WSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ECCCCCEEEEecCCCeEEecC
Confidence 99999999999999999 985
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.90 E-value=1.1e-21 Score=206.37 Aligned_cols=317 Identities=11% Similarity=0.116 Sum_probs=242.8
Q ss_pred hcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEE--eecCC
Q 001567 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNK 143 (1052)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~d~~ 143 (1052)
|.+++.+++.+|+.+.+|+|+.|..-.+|++..+..... +.++..+|+|+ +.++.
T Consensus 63 H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e-----------------------ltgHKDSVt~~~Fshdgt 119 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE-----------------------LTGHKDSVTCCSFSHDGT 119 (399)
T ss_pred cCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE-----------------------ecCCCCceEEEEEccCce
Confidence 457889999999999999999999999999986652211 22333455554 45566
Q ss_pred eEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceE
Q 001567 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1052)
Q Consensus 144 ~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (1052)
.++.|.-+|.|.+ |+..+..... .+. ..+.+|+|
T Consensus 120 lLATGdmsG~v~v--~~~stg~~~~----------------------------------~~~---~e~~dieW------- 153 (399)
T KOG0296|consen 120 LLATGDMSGKVLV--FKVSTGGEQW----------------------------------KLD---QEVEDIEW------- 153 (399)
T ss_pred EEEecCCCccEEE--EEcccCceEE----------------------------------Eee---cccCceEE-------
Confidence 6666666888877 5544433221 001 12233344
Q ss_pred EEEeeCCcEEEEEecCCceeeeeeccc-c--eecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeec
Q 001567 224 FVLYSNGQLMSCSVSKKGLKLAEFIKI-D--KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~-~--~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (1052)
+...|-+.+++.|+.|+.+..|..... . ...||+.++ |=.|.|+|+.+++|..||+|++|+..+ ++++.++...
T Consensus 154 l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt-g~p~~~~~~~- 231 (399)
T KOG0296|consen 154 LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT-GQPLHKITQA- 231 (399)
T ss_pred EEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC-CceeEEeccc-
Confidence 445788889999999999999988763 2 238999999 999999999999999999999999998 8888887752
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecc-------cccCceeeeeEcCCCCCCccceeee
Q 001567 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-------ISLSSISSPIVKPNQDCKYEPLMSG 372 (1052)
Q Consensus 300 ~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~-------~~~~~v~s~~~sp~~~~~~~~l~sg 372 (1052)
..+.-.++.++.+|..+..|+.++.+.+-+..+++.+....+ .....+.++.+.|.. ++....+.|
T Consensus 232 ------e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s-s~lpL~A~G 304 (399)
T KOG0296|consen 232 ------EGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS-SKLPLAACG 304 (399)
T ss_pred ------ccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc-cccchhhcc
Confidence 245678999999999999999999999999888887776653 113445555555542 233666777
Q ss_pred e---eeeEEecCCceEEEEecCCcccEEEEec--cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcc
Q 001567 373 T---SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (1052)
Q Consensus 373 ~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~--~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~ 447 (1052)
+ ++.+||....++.... .|...|..+.| .+++++++.+|.++.||.++|.. ..+
T Consensus 305 ~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l--------------------~~~ 363 (399)
T KOG0296|consen 305 SVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQL--------------------KFT 363 (399)
T ss_pred cccceEEEEecccchhheec-cCCCceEEEEEcCcchheeeccCceEEeeeccccce--------------------EEE
Confidence 6 9999998876665544 46778888887 58999999999999999998876 578
Q ss_pred cccCCCcEEEEEEccCCCEEEEEeCCceE-EEEcc
Q 001567 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (1052)
Q Consensus 448 ~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~ 481 (1052)
|.||+.+|...+++|++++++++|.|+++ +|++.
T Consensus 364 y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 364 YTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999999999 88763
No 42
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.7e-22 Score=212.39 Aligned_cols=237 Identities=14% Similarity=0.151 Sum_probs=204.7
Q ss_pred ccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccc-ce---ecCCCCeE-EEEEcCCCCEEEEEeeCC
Q 001567 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-DK---ELGSGDAV-CASIAPEQQILAVGTRRG 278 (1052)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~-~~---~~gh~~~v-~va~spd~~~lAsgs~Dg 278 (1052)
+.++...+.++.| +..|+++++++.|-++++||.... ++ ..||...| ++.|-|.|..|++++.|.
T Consensus 146 LrGHt~sv~di~~----------~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~ 215 (406)
T KOG0295|consen 146 LRGHTDSVFDISF----------DASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDN 215 (406)
T ss_pred hhccccceeEEEE----------ecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccccc
Confidence 3455555777664 677899999999999999998763 22 27899999 999999999999999999
Q ss_pred eEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeE
Q 001567 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (1052)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~ 358 (1052)
+|+.|++++ +-++.++.+ |...|..++-+.||..+|+++.|.++++|-+.++.+...+++| ...|.+++|
T Consensus 216 tik~We~~t-g~cv~t~~~--------h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h-Eh~vEci~w 285 (406)
T KOG0295|consen 216 TIKAWECDT-GYCVKTFPG--------HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREH-EHPVECIAW 285 (406)
T ss_pred ceeEEeccc-ceeEEeccC--------chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcc-ccceEEEEe
Confidence 999999998 889999998 9999999999999999999999999999999999888888888 778888887
Q ss_pred cCCCC----------C-Cccceeeee---eeeEEecCCceEEEEecCCcccE--EEEec-cceeeeeccCCceeeeEeee
Q 001567 359 KPNQD----------C-KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIY 421 (1052)
Q Consensus 359 sp~~~----------~-~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~~~~ 421 (1052)
-|... . ..+.+.+|+ ++++|+..++.+++++.||.+.| ++|++ |++++|+..|+++++||+..
T Consensus 286 ap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 286 APESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred cccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 66532 0 114677777 99999999999999999999999 67777 99999999999999999876
Q ss_pred cCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEc
Q 001567 422 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1052)
Q Consensus 422 ~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~ 480 (1052)
... ..++..|..-|.++.|..+-.++++|+-|.++ +|..
T Consensus 366 ~~c--------------------mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 366 LQC--------------------MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cee--------------------eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 554 34555788889999999999999999999999 9974
No 43
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.90 E-value=1.9e-22 Score=210.96 Aligned_cols=273 Identities=13% Similarity=0.191 Sum_probs=222.2
Q ss_pred CCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEE
Q 001567 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVE 281 (1052)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~ 281 (1052)
+|.+-|++++ +-|-.+.+++++.|.++++||..+++.. .||-..| .+++|+...++.+++.|+.|+
T Consensus 149 gHlgWVr~va----------vdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 149 GHLGWVRSVA----------VDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred hccceEEEEe----------eCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 4555566654 5677788999999999999999988754 7899999 999999999999999999999
Q ss_pred EEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCC
Q 001567 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (1052)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~ 361 (1052)
.||+.. .+.++...+ |-..|.|++..|.-..|++|++|.+++|||+.+...+.++.|| ...|.++.+.|.
T Consensus 219 CwDLe~-nkvIR~YhG--------HlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 219 CWDLEY-NKVIRHYHG--------HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVMCQPT 288 (460)
T ss_pred EEechh-hhhHHHhcc--------ccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEEeecC
Confidence 999998 888888888 9999999999999999999999999999999999999999999 889999999988
Q ss_pred CCCCccceeeee---eeeEEecCCceEEEEecCCcccEEEE--ec-cceeeeeccCCceeeeEeeecCceEEEEecCCcc
Q 001567 362 QDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (1052)
Q Consensus 362 ~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~--s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~ 435 (1052)
+ ..+++|+ ++++||...++-..+...|...+.++ .+ ...++++|.|. ++.|++..+.-
T Consensus 289 d----pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f----------- 352 (460)
T KOG0285|consen 289 D----PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEF----------- 352 (460)
T ss_pred C----CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccch-----------
Confidence 7 7788887 99999999999999988888877444 44 45667777775 67788766654
Q ss_pred hheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEec-CccceeeeE----EEEEEE--eCC
Q 001567 436 ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFG-DITQEQKIQ----SKGLLW--LGK 507 (1052)
Q Consensus 436 ~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~-~~~~e~~~~----v~gl~W--~~~ 507 (1052)
...+.+|+.-|.+++...|| ++++||.+|.+ .||..+|-...++ ...|-.++. +...++ .+-
T Consensus 353 ---------~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~ 422 (460)
T KOG0285|consen 353 ---------LQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGS 422 (460)
T ss_pred ---------hhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCc
Confidence 44577999999999999887 66789999999 9999988644332 222222111 223333 466
Q ss_pred EEEEEEEecCCCeEEEEEeeCC
Q 001567 508 IIVVCNYIDSSNTYELLFYPRY 529 (1052)
Q Consensus 508 ~li~~~~~~~~~~~elrly~~~ 529 (1052)
.||+| ..+..|++|..+
T Consensus 423 rlit~-----eadKtIk~~keD 439 (460)
T KOG0285|consen 423 RLITG-----EADKTIKMYKED 439 (460)
T ss_pred eEEec-----cCCcceEEEecc
Confidence 77877 566789999774
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.90 E-value=5.1e-22 Score=204.22 Aligned_cols=226 Identities=14% Similarity=0.155 Sum_probs=186.5
Q ss_pred CCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCC-CEEEEEeeCCeE
Q 001567 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQ-QILAVGTRRGVV 280 (1052)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~-~~lAsgs~Dg~V 280 (1052)
+|.++|+++.| ++||..+++++.|++++.||..++++. ++|.+.| .+..+..| .++.+|+.||++
T Consensus 88 gHsgAVM~l~~----------~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~ 157 (338)
T KOG0265|consen 88 GHSGAVMELHG----------MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTL 157 (338)
T ss_pred cccceeEeeee----------ccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceE
Confidence 34556777664 899999999999999999999998765 7888888 77655544 467899999999
Q ss_pred EEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcC
Q 001567 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (1052)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp 360 (1052)
||||++. ...++++. .+-.++++.|..++..+.+|+-|+.|++||+..+....++.|| .+.|+.+..+|
T Consensus 158 kl~D~R~-k~~~~t~~---------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh-~DtIt~lsls~ 226 (338)
T KOG0265|consen 158 KLWDIRK-KEAIKTFE---------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH-ADTITGLSLSR 226 (338)
T ss_pred EEEeecc-cchhhccc---------cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecc-cCceeeEEecc
Confidence 9999987 55666554 3667999999999999999999999999999999999999999 88999999999
Q ss_pred CCCCCccceeeee---eeeEEecC----CceEEEEecCCcccE------EEEec-cceeeeeccCCceeeeEeeecCceE
Q 001567 361 NQDCKYEPLMSGT---SMMQWDEY----GYRLYAIEEGSSERV------LIFSF-GKCCLNRGVSGMTYARQVIYGEDRL 426 (1052)
Q Consensus 361 ~~~~~~~~l~sg~---~~~~W~~~----~~~l~~~~~~~~~~v------~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l 426 (1052)
++ .++.|-+ ++++|+.. +++++.+..+|.-.+ ..+++ +..+.+|+.|..+++|+...-.-
T Consensus 227 ~g----s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~-- 300 (338)
T KOG0265|consen 227 YG----SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI-- 300 (338)
T ss_pred CC----CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccE--
Confidence 99 7777665 89999975 457788887765443 44555 77788899999999999654322
Q ss_pred EEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE
Q 001567 427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (1052)
Q Consensus 427 ~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i 476 (1052)
...+-||.+.|.+++|+|....+.+++.|.++
T Consensus 301 ------------------lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 301 ------------------LYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred ------------------EEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence 33455899999999999999999999999988
No 45
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=2.8e-21 Score=244.75 Aligned_cols=272 Identities=16% Similarity=0.208 Sum_probs=207.2
Q ss_pred eEEEEeeCCcEEEEEecCCceeeeeeccc----c------eecCCCCeE-EEEEcC-CCCEEEEEeeCCeEEEEecCCCC
Q 001567 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKI----D------KELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESA 289 (1052)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~w~~~~~----~------~~~gh~~~v-~va~sp-d~~~lAsgs~Dg~V~vwd~~~~~ 289 (1052)
..++|++||+++++++.|+++++|+.... . ....+...+ +++|+| ++.+||+|+.||+|++||+.+ +
T Consensus 487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~-~ 565 (793)
T PLN00181 487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR-S 565 (793)
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC-C
Confidence 45667899999999999999999986421 0 001233456 899987 478999999999999999987 7
Q ss_pred ceeEEEEeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcC-CCCCCcc
Q 001567 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP-NQDCKYE 367 (1052)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~g~V~~l~~Sp-Dg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp-~~~~~~~ 367 (1052)
+.+..+.+ |.+.|++++|+| ||.+|++|+.|++|++||+.++..+.++..+ ..+.++.|++ ++ .
T Consensus 566 ~~~~~~~~--------H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g----~ 631 (793)
T PLN00181 566 QLVTEMKE--------HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--ANICCVQFPSESG----R 631 (793)
T ss_pred eEEEEecC--------CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--CCeEEEEEeCCCC----C
Confidence 77777777 999999999997 8899999999999999999988888888754 5688888854 45 7
Q ss_pred ceeeee---eeeEEecCCce-EEEEecCCcccEEEEec--cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeee
Q 001567 368 PLMSGT---SMMQWDEYGYR-LYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (1052)
Q Consensus 368 ~l~sg~---~~~~W~~~~~~-l~~~~~~~~~~v~~~s~--~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~ 441 (1052)
.+++|+ ++.+|+....+ .+....+|...|..+.| +..+++++.|+++++|++..+.... .+
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~-----------~~-- 698 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGI-----------NE-- 698 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcccc-----------CC--
Confidence 788876 89999997765 45666788888866666 7889999999999999986432100 00
Q ss_pred eccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCc--E-EEecCcc-------ceeeeEEEEEEEeC--CE
Q 001567 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--W-RVFGDIT-------QEQKIQSKGLLWLG--KI 508 (1052)
Q Consensus 442 ~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~--w-~~f~~~~-------~e~~~~v~gl~W~~--~~ 508 (1052)
....++.+|...+.+++|+|+|++||+|+.||.+ +|+..... | ..|.... ....-.|..++|.+ ..
T Consensus 699 -~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 699 -TPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST 777 (793)
T ss_pred -cceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence 1134567899999999999999999999999999 99976542 1 1122111 11112467899964 46
Q ss_pred EEEEEEecCCCeEEEEEee
Q 001567 509 IVVCNYIDSSNTYELLFYP 527 (1052)
Q Consensus 509 li~~~~~~~~~~~elrly~ 527 (1052)
+++| ..+..|++|+
T Consensus 778 lva~-----~~dG~I~i~~ 791 (793)
T PLN00181 778 LVAA-----NSTGNIKILE 791 (793)
T ss_pred EEEe-----cCCCcEEEEe
Confidence 7776 3456788885
No 46
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.9e-22 Score=211.24 Aligned_cols=223 Identities=14% Similarity=0.114 Sum_probs=179.9
Q ss_pred EEEeeCCcEEEEEecCCceeeeeeccccee----cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEee
Q 001567 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~----~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~ 298 (1052)
+.+|||.+++++++.+..+++||..++... .+|...+ |++|.|||..+++|+.|+++..||++ +..+..+++.
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD--gn~~~~W~gv 352 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD--GNILGNWEGV 352 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC--cchhhccccc
Confidence 446899999999999999999999988765 4566777 99999999999999999999999987 4545555551
Q ss_pred cCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---ee
Q 001567 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 375 (1052)
Q Consensus 299 ~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~ 375 (1052)
..-.|.+++.++||+++.+...|..+++++.........+..+ ..+++..+|.++ .++.... .+
T Consensus 353 -------r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~--~~its~~iS~d~----k~~LvnL~~qei 419 (519)
T KOG0293|consen 353 -------RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE--QPITSFSISKDG----KLALVNLQDQEI 419 (519)
T ss_pred -------ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc--CceeEEEEcCCC----cEEEEEcccCee
Confidence 2356999999999999999999999999999876544334333 679999999887 5554333 78
Q ss_pred eEEecCCceEEEEecCCcccEE----EEec--cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccc
Q 001567 376 MQWDEYGYRLYAIEEGSSERVL----IFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (1052)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v~----~~s~--~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~ 449 (1052)
.+||.+...++....||...-+ +|.- .+.+++||.|+.+++|+...+.. ..++.
T Consensus 420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl--------------------l~~Ls 479 (519)
T KOG0293|consen 420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL--------------------LAVLS 479 (519)
T ss_pred EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce--------------------eEeec
Confidence 9999998888877788866542 2222 35789999999999999876654 56778
Q ss_pred cCCCcEEEEEEccC-CCEEEEEeCCceE-EEEcc
Q 001567 450 SQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIR 481 (1052)
Q Consensus 450 ~h~~~V~~va~Spd-G~~lavag~dG~i-lwd~~ 481 (1052)
||...|++|+++|. -.++|+||.||+| +|...
T Consensus 480 GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 480 GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999999995 6789999999999 99864
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=6.2e-22 Score=210.44 Aligned_cols=273 Identities=15% Similarity=0.226 Sum_probs=204.3
Q ss_pred EEEeeCCeEEEEEc-CCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCcee
Q 001567 25 IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (1052)
Q Consensus 25 v~fSpdg~llA~~s-d~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~ 103 (1052)
+.||++|++||+++ |.+..||.+. .-+.+. ++.+..+ +..++..+.||||+++|++++.+..+.+||+.++....
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~-~d~~~k-l~~tlvg--h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~ 305 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVV-YDVHFK-LKKTLVG--HSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH 305 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEe-cCccee-eeeeeec--ccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh
Confidence 78999999999996 7899999885 444422 2223222 55678899999999999999999999999999876432
Q ss_pred -ecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceee
Q 001567 104 -QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (1052)
Q Consensus 104 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i 182 (1052)
+..++ +....-++..||+..+++|+.|+.+..|+.|++..+.-+
T Consensus 306 ~y~~~~---------------------~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~-------------- 350 (519)
T KOG0293|consen 306 LYPSGL---------------------GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWE-------------- 350 (519)
T ss_pred hcccCc---------------------CCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccc--------------
Confidence 22111 111223466789999999999999988776765533211
Q ss_pred cccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee--cCCCCeE
Q 001567 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV 260 (1052)
Q Consensus 183 ~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~gh~~~v 260 (1052)
.-....|.+ +++++||+.+++...|..+++.+.+..... .....++
T Consensus 351 ----------------------gvr~~~v~d----------lait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~i 398 (519)
T KOG0293|consen 351 ----------------------GVRDPKVHD----------LAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPI 398 (519)
T ss_pred ----------------------ccccceeEE----------EEEcCCCcEEEEEecccceeeechhhhhhhccccccCce
Confidence 011123544 456899999998889999998876643221 2233455
Q ss_pred -EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCC--eeEEEECC-CCCEEEEEEcCCcEEEEEc
Q 001567 261 -CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP--VSCIAWTP-DNSAFAVGWKSRGLTVWSV 336 (1052)
Q Consensus 261 -~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~--V~~l~~Sp-Dg~~Lasg~~Dg~v~vWd~ 336 (1052)
+.++|.|++++.+--.+..+++||+++ ...++...+ |+-. +-.-+|-. |..++|+|++|+.|.||+.
T Consensus 399 ts~~iS~d~k~~LvnL~~qei~LWDl~e-~~lv~kY~G--------hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 399 TSFSISKDGKLALVNLQDQEIHLWDLEE-NKLVRKYFG--------HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred eEEEEcCCCcEEEEEcccCeeEEeecch-hhHHHHhhc--------ccccceEEEeccCCCCcceEEecCCCceEEEEEc
Confidence 999999999999999999999999996 777777777 5433 33335554 5689999999999999999
Q ss_pred CCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecC
Q 001567 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (1052)
Q Consensus 337 ~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~ 381 (1052)
.+++++..|.|| ...|++++++|..+ ++++|++ ++++|.+.
T Consensus 470 ~sgkll~~LsGH-s~~vNcVswNP~~p---~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 470 ISGKLLAVLSGH-SKTVNCVSWNPADP---EMFASASDDGTIRIWGPS 513 (519)
T ss_pred cCCceeEeecCC-cceeeEEecCCCCH---HHhhccCCCCeEEEecCC
Confidence 999999999999 78899999999862 6777776 88888765
No 48
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.89 E-value=1.1e-22 Score=203.40 Aligned_cols=235 Identities=18% Similarity=0.222 Sum_probs=195.3
Q ss_pred cCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee--cCCCCeE-EEEEcCCCCEEEEEeeCCeEE
Q 001567 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRRGVVE 281 (1052)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~gh~~~v-~va~spd~~~lAsgs~Dg~V~ 281 (1052)
.++++.|.+.+ +..|....++++.|++.++||..++..+ ..|...| .++|+.|...|.+|+.+..+|
T Consensus 56 eghkgavw~~~----------l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllr 125 (334)
T KOG0278|consen 56 EGHKGAVWSAT----------LNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLR 125 (334)
T ss_pred eccCcceeeee----------cCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhh
Confidence 46777776643 3556667788899999999999988665 5788999 999999999999999999999
Q ss_pred EEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCC
Q 001567 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (1052)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~ 361 (1052)
|||++.+......+.+ |++.|..+-|....+++.++.+|++|++||..++..+++|.- .+.|+++.++++
T Consensus 126 vfdln~p~App~E~~g--------htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~--~s~VtSlEvs~d 195 (334)
T KOG0278|consen 126 VFDLNRPKAPPKEISG--------HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF--NSPVTSLEVSQD 195 (334)
T ss_pred hhhccCCCCCchhhcC--------CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec--CCCCcceeeccC
Confidence 9999875555566666 999999999999888899989999999999999999999986 367999999999
Q ss_pred CCCCccce--eeeeeeeEEecCCceEEEEecCCcccE--EEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcch
Q 001567 362 QDCKYEPL--MSGTSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE 436 (1052)
Q Consensus 362 ~~~~~~~l--~sg~~~~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~ 436 (1052)
+ +++ +-|+++++|++.+..++....- .-.| ..+.+ ....+.|+.|+-++.+|..++++.
T Consensus 196 G----~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi----------- 259 (334)
T KOG0278|consen 196 G----RILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEI----------- 259 (334)
T ss_pred C----CEEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCcee-----------
Confidence 8 554 4455999999999888776532 2334 44555 456778999999999999888873
Q ss_pred heeeeeccCccc-ccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 001567 437 LKILHLNLPVSY-ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1052)
Q Consensus 437 ~~w~~~~~p~~~-~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~ 484 (1052)
..| .+|-+||.|+.|||||...|+|++||++ +|.+..++
T Consensus 260 ---------~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 260 ---------GSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ---------eecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 334 7899999999999999999999999999 99987653
No 49
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=3.6e-21 Score=203.46 Aligned_cols=266 Identities=17% Similarity=0.198 Sum_probs=205.5
Q ss_pred eEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEE
Q 001567 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (1052)
Q Consensus 134 ~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~ 213 (1052)
-|+++...++.|+.|+-||.+++|+-.|+.. . ...++..+|.+
T Consensus 107 WVSsv~~~~~~IltgsYDg~~riWd~~Gk~~--~-----------------------------------~~~Ght~~ik~ 149 (423)
T KOG0313|consen 107 WVSSVKGASKWILTGSYDGTSRIWDLKGKSI--K-----------------------------------TIVGHTGPIKS 149 (423)
T ss_pred hhhhhcccCceEEEeecCCeeEEEecCCceE--E-----------------------------------EEecCCcceee
Confidence 3455555578999999999999865444321 1 12345556665
Q ss_pred EEecCCcceEEEEeeC--CcEEEEEecCCceeeeeeccccee-------cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEE
Q 001567 214 LELCLPMRLLFVLYSN--GQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAV-CASIAPEQQILAVGTRRGVVELY 283 (1052)
Q Consensus 214 i~~~~~~~~~~~~s~d--G~~~~~~~~d~~i~~w~~~~~~~~-------~gh~~~v-~va~spd~~~lAsgs~Dg~V~vw 283 (1052)
+.+ +.+| ...+++++.|.++++|....++.. .||..+| |++.+++|..+++|+.|.++++|
T Consensus 150 v~~---------v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiW 220 (423)
T KOG0313|consen 150 VAW---------VIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIW 220 (423)
T ss_pred eEE---------EecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeec
Confidence 544 2333 237889999999999987755432 5999999 99999999999999999999999
Q ss_pred ecCCCC------------------------ceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCC
Q 001567 284 DLAESA------------------------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1052)
Q Consensus 284 d~~~~~------------------------~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~ 339 (1052)
+..... .++-++. +|+++|.+|.|++ ...+.+++.|.+|++||+.++
T Consensus 221 s~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~--------GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 221 SVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE--------GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred ccCCCccccccccchhhhhhhhhhhcccccCceEEec--------ccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence 943210 1122233 5999999999998 678899999999999999999
Q ss_pred eEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCce---EEEEecCCcccE--EEEec--cceeeeec
Q 001567 340 RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR---LYAIEEGSSERV--LIFSF--GKCCLNRG 409 (1052)
Q Consensus 340 ~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~---l~~~~~~~~~~v--~~~s~--~k~~~s~s 409 (1052)
.+..++.+. ...+++..+|.. ..+++|+ .+++||+.++. .-..+.||.+-| +..++ ...+++++
T Consensus 292 ~~~~~~~~~--ksl~~i~~~~~~----~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 292 GLKSTLTTN--KSLNCISYSPLS----KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS 365 (423)
T ss_pred cceeeeecC--cceeEeeccccc----ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe
Confidence 998888764 678999999877 8889888 78899997642 344567899888 44444 45789999
Q ss_pred cCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEc
Q 001567 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1052)
Q Consensus 410 ~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~ 480 (1052)
.|+++++||+...... .....+|+..|.++.|+ +|.++++||.|..+ ++..
T Consensus 366 ~D~t~klWDvRS~k~p-------------------lydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 366 YDNTVKLWDVRSTKAP-------------------LYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred cCCeEEEEEeccCCCc-------------------ceeeccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 9999999999887652 24566899999999998 78899999999999 8764
No 50
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.88 E-value=2.8e-20 Score=203.59 Aligned_cols=269 Identities=20% Similarity=0.294 Sum_probs=214.3
Q ss_pred CCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeecccc---eecCCCCeE-EEEEcCCCCEEEEEeeCCeEE
Q 001567 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID---KELGSGDAV-CASIAPEQQILAVGTRRGVVE 281 (1052)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~---~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~ 281 (1052)
+|...|.++.+ +|+|+.+++++.++.+.+|+....+ ...+|...+ ++.|+|+++.+++|+.||.|+
T Consensus 7 ~h~~~i~~~~~----------~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 76 (289)
T cd00200 7 GHTGGVTCVAF----------SPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIR 76 (289)
T ss_pred ccCCCEEEEEE----------cCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEE
Confidence 45667777664 7888999999889999999887553 236788888 999999999999999999999
Q ss_pred EEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCC
Q 001567 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (1052)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~ 361 (1052)
+|++.. ++....+.. |.+.|.+++|+|+++++++++.|+.+.+|++.+++....+..| ...++++.++|+
T Consensus 77 i~~~~~-~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 146 (289)
T cd00200 77 LWDLET-GECVRTLTG--------HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDWVNSVAFSPD 146 (289)
T ss_pred EEEcCc-ccceEEEec--------cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC-CCcEEEEEEcCc
Confidence 999987 666666666 8889999999999999999998999999999988888888876 678999999998
Q ss_pred CCCCccceeeee---eeeEEecCCceEEEEecCCcccEEEEec---cceeeeeccCCceeeeEeeecCceEEEEecCCcc
Q 001567 362 QDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (1052)
Q Consensus 362 ~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~ 435 (1052)
+ ..++++. .+.+|+..+++.......|...+..+.+ ++.+++++.++.+++|++..+..
T Consensus 147 ~----~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~----------- 211 (289)
T cd00200 147 G----TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC----------- 211 (289)
T ss_pred C----CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce-----------
Confidence 6 6776664 7899999988888877787777755554 55788888899999999765332
Q ss_pred hheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEE-EecCccceeeeEEEEEEEeC--CEEEE
Q 001567 436 ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLG--KIIVV 511 (1052)
Q Consensus 436 ~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~-~f~~~~~e~~~~v~gl~W~~--~~li~ 511 (1052)
...+..|..+|.+++|+|++.++++++.+|.+ +|++.+++-. .+. .+ .-.+.++.|.. ..+++
T Consensus 212 ---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~--~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 212 ---------LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--GH--TNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred ---------ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--cc--CCcEEEEEECCCCCEEEE
Confidence 23444788899999999999999999989999 9999865432 222 11 12366788875 57776
Q ss_pred EEEecCCCeEEEEEee
Q 001567 512 CNYIDSSNTYELLFYP 527 (1052)
Q Consensus 512 ~~~~~~~~~~elrly~ 527 (1052)
+ +.+..+++|+
T Consensus 279 ~-----~~d~~i~iw~ 289 (289)
T cd00200 279 G-----SADGTIRIWD 289 (289)
T ss_pred e-----cCCCeEEecC
Confidence 6 3445788874
No 51
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=1.6e-22 Score=208.28 Aligned_cols=265 Identities=14% Similarity=0.218 Sum_probs=205.4
Q ss_pred eEEEEeeCCcEEEEEecCCceeeeeeccccee-----------cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCC
Q 001567 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA 289 (1052)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-----------~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~ 289 (1052)
-++.|||||+++++++-|+-+.+|+..+++.. .-+.++| |+.||.|...+|+|+.||.|+||.+.+ +
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t-G 295 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET-G 295 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-c
Confidence 45788999999999999999999998877543 2367899 999999999999999999999999998 9
Q ss_pred ceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccce
Q 001567 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (1052)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l 369 (1052)
.+++.+.. +|+.+|+|+.||.|+..+.+++.|.+++|--+.+|+++..++|| .+.|+...|.++| ..+
T Consensus 296 ~ClRrFdr-------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH-sSyvn~a~ft~dG----~~i 363 (508)
T KOG0275|consen 296 QCLRRFDR-------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH-SSYVNEATFTDDG----HHI 363 (508)
T ss_pred hHHHHhhh-------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc-cccccceEEcCCC----CeE
Confidence 99988874 39999999999999999999999999999999999999999999 7889999999999 778
Q ss_pred eeee---eeeEEecCCceEEEEecCCc--ccE---EEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheee
Q 001567 370 MSGT---SMMQWDEYGYRLYAIEEGSS--ERV---LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (1052)
Q Consensus 370 ~sg~---~~~~W~~~~~~l~~~~~~~~--~~v---~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~ 440 (1052)
+|++ ++++|+..+.+++.+..... -.| .-++- ...++.++..+++.+-++ ...
T Consensus 364 isaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~--qGQ---------------- 425 (508)
T KOG0275|consen 364 ISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM--QGQ---------------- 425 (508)
T ss_pred EEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec--cce----------------
Confidence 7776 99999999999888765322 222 22222 334555666666654332 111
Q ss_pred eeccCcccc---cCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEec
Q 001567 441 HLNLPVSYI---SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYID 516 (1052)
Q Consensus 441 ~~~~p~~~~---~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~ 516 (1052)
+..++. -..+..-+++.||.|.++...|.|+.. .|++.+|+...+-.. +|++ +.|+..+.+--+.+.|.+
T Consensus 426 ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-hEkd--vIGl~HHPHqNllAsYsE 499 (508)
T KOG0275|consen 426 ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-HEKD--VIGLTHHPHQNLLASYSE 499 (508)
T ss_pred ---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-cccc--ccccccCcccchhhhhcc
Confidence 111111 123456678999999999999999999 999999998766543 3432 667777655444444643
Q ss_pred CCCeEEEEEe
Q 001567 517 SSNTYELLFY 526 (1052)
Q Consensus 517 ~~~~~elrly 526 (1052)
+..+++|
T Consensus 500 ---DgllKLW 506 (508)
T KOG0275|consen 500 ---DGLLKLW 506 (508)
T ss_pred ---cchhhhc
Confidence 3445555
No 52
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=2.1e-20 Score=209.72 Aligned_cols=413 Identities=16% Similarity=0.137 Sum_probs=255.3
Q ss_pred ceEEEEeeCCeEEEEEcCCcEEEeecCCceeEE----EEEecCh--------h-------------h---hhhcC-----
Q 001567 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRL----GKYKRDS--------E-------------S---VQREG----- 68 (1052)
Q Consensus 22 ~~vv~fSpdg~llA~~sd~~v~IW~~~~~~~~l----~~~~r~~--------~-------------s---l~~~G----- 68 (1052)
..+++||.||.+|++++...|++|+.. -+.+. --..|+. + + +...|
T Consensus 168 Vsav~fsEdgSYfvT~gnrHvk~wyl~-~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEF 246 (1080)
T KOG1408|consen 168 VSAVAFSEDGSYFVTSGNRHVKLWYLQ-IQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEF 246 (1080)
T ss_pred EEEEEEccCCceeeeeeeeeEEEEEee-ccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeee
Confidence 456899999999999999999999985 32210 0000100 0 0 00000
Q ss_pred ---------------ccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEe---eeecccccccc
Q 001567 69 ---------------ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKIS---LVLNEQLPFAE 130 (1052)
Q Consensus 69 ---------------~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 130 (1052)
...|++- ..++|++|+++|.|+||+.++-.-.-..+.....+..+.++. -.+.+...-.-
T Consensus 247 SsRRLLDKWVqcRTTnAnCIcV--s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f 324 (1080)
T KOG1408|consen 247 SSRRLLDKWVQCRTTNANCICV--SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF 324 (1080)
T ss_pred chhhhhhhhhhhhccccceeee--ecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccC
Confidence 0112333 457999999999999999864321111111110011111110 01111111011
Q ss_pred ccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCcc
Q 001567 131 KGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSA 210 (1052)
Q Consensus 131 ~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~ 210 (1052)
.+...+-|.+..+.+.+.-.|..+++|+.++-..... . ....-|...
T Consensus 325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk-----------~----------------------~s~lyHS~c 371 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK-----------C----------------------SSMLYHSAC 371 (1080)
T ss_pred CceeEEEecCCCceEEEEEcCceEEEEeccccccccc-----------e----------------------eeeeeccce
Confidence 1222333444567788888888888855443321111 0 111234455
Q ss_pred EEEEEecC-Cc-ceEEEEeeCCcEEEEEecCCceeeeeecccc---e-----e---------------------------
Q 001567 211 IIWLELCL-PM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKID---K-----E--------------------------- 253 (1052)
Q Consensus 211 i~~i~~~~-~~-~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~---~-----~--------------------------- 253 (1052)
|.+++--| .+ ..-.+..|.|. +.+++.|+||++|+..... . +
T Consensus 372 iW~Ve~~p~nv~~~~~aclp~~c-F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdk 450 (1080)
T KOG1408|consen 372 IWDVENLPCNVHSPTAACLPRGC-FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDK 450 (1080)
T ss_pred eeeeccccccccCcccccCCccc-eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccc
Confidence 66665433 11 12223345554 7788999999999875310 0 0
Q ss_pred -----cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC---CCCEEEE
Q 001567 254 -----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP---DNSAFAV 324 (1052)
Q Consensus 254 -----~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp---Dg~~Las 324 (1052)
.+..-.+ |+++||+|+.||+|..-|+++||++.. .+....+.. |...|.|+.||. ..++||+
T Consensus 451 a~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eA--------HesEilcLeyS~p~~~~kLLAS 521 (1080)
T KOG1408|consen 451 ALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEA--------HESEILCLEYSFPVLTNKLLAS 521 (1080)
T ss_pred cchhhcCcccceEEEEECCCcceecccCccCceEEEEehh-hhhhhheec--------ccceeEEEeecCchhhhHhhhh
Confidence 0122356 999999999999999999999999987 666666777 999999999995 3579999
Q ss_pred EEcCCcEEEEEcCC-CeEEEEecccccCceeeeeEcCCCCCCccceeeee-eeeEEecC----CceEEEEecC--CcccE
Q 001567 325 GWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEY----GYRLYAIEEG--SSERV 396 (1052)
Q Consensus 325 g~~Dg~v~vWd~~~-~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~----~~~l~~~~~~--~~~~v 396 (1052)
|++|+-|.|+|+.. -.++.++.+| .+.|+++.|-.++ .+.+++.+|. ....+... .+.++..... ....+
T Consensus 522 asrdRlIHV~Dv~rny~l~qtld~H-SssITsvKFa~~g-ln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNYDLVQTLDGH-SSSITSVKFACNG-LNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTL 599 (1080)
T ss_pred ccCCceEEEEecccccchhhhhccc-ccceeEEEEeecC-CceEEEeccCchhhheehhccccCceeccccccccccceE
Confidence 99999999999964 4577899988 7889999997765 2345555555 33334332 2444332211 12334
Q ss_pred --EEEec-cceeeeeccCCceeeeEeeecCceEEEEec--CCcch-----------------------heeeeeccCccc
Q 001567 397 --LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQS--EDTDE-----------------------LKILHLNLPVSY 448 (1052)
Q Consensus 397 --~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~--~~~~~-----------------------~~w~~~~~p~~~ 448 (1052)
+.+++ .+.+++++.|..++++++..++..-..-.+ ++.+- ...-..++..+.
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence 34445 788999999999999998776654333322 21110 012234456677
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccC
Q 001567 449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1052)
Q Consensus 449 ~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s 482 (1052)
.||...|+.+.|++|-++|.+++.||.| +|.+..
T Consensus 680 ~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 680 TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 8999999999999999999999999999 999854
No 53
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.88 E-value=9.6e-21 Score=194.88 Aligned_cols=271 Identities=12% Similarity=0.130 Sum_probs=205.5
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~ 332 (1052)
.||.+.| ++.|+|+|.++|+|+.|..|.+|++....+...++++ |.|+|..+.|++||+.+.+++.|++++
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg--------HsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG--------HSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc--------ccceeEeeeeccCCCEEEEecCCceEE
Confidence 7999999 9999999999999999999999998654666777777 999999999999999999999999999
Q ss_pred EEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccEEEEec---cceee
Q 001567 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCL 406 (1052)
Q Consensus 333 vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~ 406 (1052)
.||+.+|+....+++| .+-|+++.-+..+ .+++.||+ ++++||....+.+.+... .-++.++.| +..+.
T Consensus 116 ~wD~~tG~~~rk~k~h-~~~vNs~~p~rrg---~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGH-TSFVNSLDPSRRG---PQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVI 190 (338)
T ss_pred EEecccceeeehhccc-cceeeecCccccC---CeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEeccccccee
Confidence 9999999999999998 6778887733332 36777877 999999998777766543 446677777 77889
Q ss_pred eeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEcc----
Q 001567 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR---- 481 (1052)
Q Consensus 407 s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~---- 481 (1052)
+|+-|+.+++||+..++. ...+.||.++|..++.||+|.++.+-+-|.++ +||++
T Consensus 191 sggIdn~ikvWd~r~~d~--------------------~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDG--------------------LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred eccccCceeeeccccCcc--------------------eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC
Confidence 999999999999987665 45667999999999999999999999999999 99985
Q ss_pred CCc-EEEecCccceeeeEEEEEEEeCC--EEEEEEEecCCCeEEEEEeeCCCCCCcceeEEeecCCccEE-----EEeeC
Q 001567 482 QKK-WRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIV-----MDVYE 553 (1052)
Q Consensus 482 s~~-w~~f~~~~~e~~~~v~gl~W~~~--~li~~~~~~~~~~~elrly~~~~ld~~~~l~~~~~~~~~~~-----~s~~~ 553 (1052)
+.+ .+.|....+..+.+.....|..+ ++-++ +.+..+.+|+... ....+.+|..-.. +.|.+
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ag-----s~dr~vyvwd~~~-----r~~lyklpGh~gsvn~~~Fhp~e 320 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAG-----SADRFVYVWDTTS-----RRILYKLPGHYGSVNEVDFHPTE 320 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccc-----cccceEEEeeccc-----ccEEEEcCCcceeEEEeeecCCC
Confidence 333 45554433333333446778643 44443 3446677887641 1222344442222 33445
Q ss_pred CEEEEEEcCCeEEE
Q 001567 554 DYILVTYRPFDVHI 567 (1052)
Q Consensus 554 ~~llv~~~d~~i~l 567 (1052)
..++....|.+|.+
T Consensus 321 ~iils~~sdk~i~l 334 (338)
T KOG0265|consen 321 PIILSCSSDKTIYL 334 (338)
T ss_pred cEEEEeccCceeEe
Confidence 55555666666554
No 54
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.87 E-value=5.7e-20 Score=193.71 Aligned_cols=311 Identities=14% Similarity=0.234 Sum_probs=227.6
Q ss_pred eEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEe
Q 001567 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1052)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~ 297 (1052)
..+...|+.+++++|+.|....+|+..++... .||.+.| |+.||.+|.+||+|.-+|.|+||+.++ +.....+..
T Consensus 68 Favsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st-g~~~~~~~~ 146 (399)
T KOG0296|consen 68 FAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST-GGEQWKLDQ 146 (399)
T ss_pred EEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc-CceEEEeec
Confidence 44566888899999999999999998877643 7999999 999999999999999999999999988 655555543
Q ss_pred ecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---e
Q 001567 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (1052)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~ 374 (1052)
.-+.+.=+.|+|-+..|+.|+.||.+.+|.+..+.....+.|| ..++++=.|.|+| +.+++|. +
T Consensus 147 --------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh-~~~ct~G~f~pdG----Kr~~tgy~dgt 213 (399)
T KOG0296|consen 147 --------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH-NSPCTCGEFIPDG----KRILTGYDDGT 213 (399)
T ss_pred --------ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCC-CCCcccccccCCC----ceEEEEecCce
Confidence 3456777899999999999999999999999987778888888 7889999999999 7888876 9
Q ss_pred eeEEecCCceEEEEecCCccc-E--EEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCccccc
Q 001567 375 MMQWDEYGYRLYAIEEGSSER-V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (1052)
Q Consensus 375 ~~~W~~~~~~l~~~~~~~~~~-v--~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~ 450 (1052)
+++|++.+++.+....+.... . ..+.. +..+++++.++.+++-. .+..++....... .|....+
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~--~~sgKVv~~~n~~----------~~~l~~~ 281 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN--NGSGKVVNCNNGT----------VPELKPS 281 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc--cccceEEEecCCC----------Ccccccc
Confidence 999999999988877542211 1 33333 66777888888776533 2222222221100 1222223
Q ss_pred CC---CcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeC-CEEEEEEEecCCCeEEEEE
Q 001567 451 QN---WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG-KIIVVCNYIDSSNTYELLF 525 (1052)
Q Consensus 451 h~---~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~~-~~li~~~~~~~~~~~elrl 525 (1052)
+. ..|.++.+|..=.+.|+|+-||++ +||+.+.+.+..- .+|. .|+.+.|.+ ++|.+||.+ ..+|.
T Consensus 282 ~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c--~he~--~V~~l~w~~t~~l~t~c~~-----g~v~~ 352 (399)
T KOG0296|consen 282 QEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC--EHED--GVTKLKWLNTDYLLTACAN-----GKVRQ 352 (399)
T ss_pred chhhhhhhhhcccccccchhhcccccceEEEEecccchhheec--cCCC--ceEEEEEcCcchheeeccC-----ceEEe
Confidence 33 345556667778899999999999 9999886654321 1222 388999988 788888554 57888
Q ss_pred eeCCCCCCcceeEEee-cCCccE--EEEeeCCEEEEEEcCCeEEEEEE
Q 001567 526 YPRYHLDQSSLLCRKS-LLAKPI--VMDVYEDYILVTYRPFDVHIFHV 570 (1052)
Q Consensus 526 y~~~~ld~~~~l~~~~-~~~~~~--~~s~~~~~llv~~~d~~i~l~~~ 570 (1052)
|+.- ...++.++. +...++ .+++..+.++.++.|++.++|.+
T Consensus 353 wDaR---tG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 353 WDAR---TGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred eecc---ccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 8762 223333332 223343 35677788888999999999976
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.8e-20 Score=186.38 Aligned_cols=253 Identities=19% Similarity=0.214 Sum_probs=202.3
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~ 332 (1052)
.+|.++| .+.||-||++..+++.|.+||+|+... +.++++.++ |...|..++-+.|+..+|+|+.|+.+.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r-g~liktYsg--------hG~EVlD~~~s~Dnskf~s~GgDk~v~ 84 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-GALIKTYSG--------HGHEVLDAALSSDNSKFASCGGDKAVQ 84 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccc-cceeeeecC--------CCceeeeccccccccccccCCCCceEE
Confidence 5678999 999999999999999999999999987 899999998 999999999999999999999999999
Q ss_pred EEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCC--ceEEEEecCCcccEEEEec-cceee
Q 001567 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG--YRLYAIEEGSSERVLIFSF-GKCCL 406 (1052)
Q Consensus 333 vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~--~~l~~~~~~~~~~v~~~s~-~k~~~ 406 (1052)
+||+.+|+....+++| ...|+.++|.-.. ..++||+ ++++||-.. .+.+.++....+.|..+.. ...++
T Consensus 85 vwDV~TGkv~Rr~rgH-~aqVNtV~fNees----SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIv 159 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGH-LAQVNTVRFNEES----SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIV 159 (307)
T ss_pred EEEcccCeeeeecccc-cceeeEEEecCcc----eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEE
Confidence 9999999999999999 7899999998776 7888998 899999754 5677777666778888888 77899
Q ss_pred eeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcE
Q 001567 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (1052)
Q Consensus 407 s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w 485 (1052)
+||.||+++.+++..|.. ...|.+| ||++++||+||+...+++-|+++ +-|-.+|+.
T Consensus 160 aGS~DGtvRtydiR~G~l--------------------~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTL--------------------SSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred eeccCCcEEEEEeeccee--------------------ehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence 999999999999988765 4456665 89999999999999999999999 999999874
Q ss_pred EEecCccceeeeEEEEEEEe-CCEEEEEEEecCCCeEEEEEeeCCCCCCcceeEEeecCCccEEEE
Q 001567 486 RVFGDITQEQKIQSKGLLWL-GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD 550 (1052)
Q Consensus 486 ~~f~~~~~e~~~~v~gl~W~-~~~li~~~~~~~~~~~elrly~~~~ld~~~~l~~~~~~~~~~~~s 550 (1052)
-.-....+.+++.+....-. ..+++.| +.+..+.+|+.. +..++....+++.++..+
T Consensus 218 L~sYkGhkn~eykldc~l~qsdthV~sg-----SEDG~Vy~wdLv---d~~~~sk~~~~~~v~v~d 275 (307)
T KOG0316|consen 218 LKSYKGHKNMEYKLDCCLNQSDTHVFSG-----SEDGKVYFWDLV---DETQISKLSVVSTVIVTD 275 (307)
T ss_pred HHHhcccccceeeeeeeecccceeEEec-----cCCceEEEEEec---cceeeeeeccCCceeEEe
Confidence 21111122233443322222 2344444 456778889763 334555566666664433
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.1e-20 Score=213.17 Aligned_cols=251 Identities=14% Similarity=0.204 Sum_probs=199.3
Q ss_pred CCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 001567 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1052)
Q Consensus 257 ~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd 335 (1052)
+..| .++|+|...+|.++-.+|.|++||.+. +.++..+.. |.|+|..++|+|++-.++||++|..|+||+
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM-~tli~rFde--------HdGpVRgv~FH~~qplFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM-GTLIDRFDE--------HDGPVRGVDFHPTQPLFVSGGDDYKIKVWN 79 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhh-hhHHhhhhc--------cCCccceeeecCCCCeEEecCCccEEEEEe
Confidence 4566 899999999999999999999999998 888988888 999999999999999999999999999999
Q ss_pred cCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccEEEEec---cceeeeec
Q 001567 336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRG 409 (1052)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s 409 (1052)
....+++.+|.|| .+-|..+.|++.- .-++|++ |+++|+..+..++.++.||...|.+..| ...++|+|
T Consensus 80 Yk~rrclftL~GH-lDYVRt~~FHhey----PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaS 154 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGH-LDYVRTVFFHHEY----PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSAS 154 (1202)
T ss_pred cccceehhhhccc-cceeEEeeccCCC----ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEec
Confidence 9999999999999 8999999999875 6677877 9999999999999999999999977666 67899999
Q ss_pred cCCceeeeEeeecCceEEEEec-CC-c-------chhe-eeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EE
Q 001567 410 VSGMTYARQVIYGEDRLLVVQS-ED-T-------DELK-ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 478 (1052)
Q Consensus 410 ~d~~v~~w~~~~~~~~l~~~~~-~~-~-------~~~~-w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lw 478 (1052)
.|.|+++||+..-..+-. ..+ .+ . .++. .....+-..+.||.--|+-++|+|.-..+++|+.|..+ +|
T Consensus 155 LDQTVRVWDisGLRkk~~-~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlW 233 (1202)
T KOG0292|consen 155 LDQTVRVWDISGLRKKNK-APGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 233 (1202)
T ss_pred ccceEEEEeecchhccCC-CCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEE
Confidence 999999999753222111 111 00 0 0000 00111224567999999999999999999999999999 99
Q ss_pred Ecc-CCcEEEecCccceeeeEEEEEEEeC--CEEEEEEEecCCCeEEEEEeeCC
Q 001567 479 DIR-QKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY 529 (1052)
Q Consensus 479 d~~-s~~w~~f~~~~~e~~~~v~gl~W~~--~~li~~~~~~~~~~~elrly~~~ 529 (1052)
.++ ++-|..=.-..|-+ .|.++..++ +.+++. +.+..||+|+.+
T Consensus 234 rmnetKaWEvDtcrgH~n--nVssvlfhp~q~lIlSn-----sEDksirVwDm~ 280 (1202)
T KOG0292|consen 234 RMNETKAWEVDTCRGHYN--NVSSVLFHPHQDLILSN-----SEDKSIRVWDMT 280 (1202)
T ss_pred EeccccceeehhhhcccC--CcceEEecCccceeEec-----CCCccEEEEecc
Confidence 985 56687532222222 255555554 556654 566789999885
No 57
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=9.2e-21 Score=194.83 Aligned_cols=238 Identities=16% Similarity=0.216 Sum_probs=179.6
Q ss_pred ccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee-----cCCCCeE-EEEEcCCCCEEEEEeeC
Q 001567 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQQILAVGTRR 277 (1052)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-----~gh~~~v-~va~spd~~~lAsgs~D 277 (1052)
+++|-..|.+++| .|...++++++.|++++++|..+.... ..-..+| |++|+|.|.+|++|..-
T Consensus 168 lYDH~devn~l~F----------HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdH 237 (430)
T KOG0640|consen 168 LYDHVDEVNDLDF----------HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDH 237 (430)
T ss_pred hhhccCcccceee----------cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCC
Confidence 3455556666654 677889999999999999998765322 2335678 99999999999999999
Q ss_pred CeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecc-cccCceeee
Q 001567 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLSSISSP 356 (1052)
Q Consensus 278 g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~-~~~~~v~s~ 356 (1052)
-++++||+.+ .++...-. ...+|++.|+++.+|+.|+.-++|+.||.|++||--+++++.++.. |+.+.|.+.
T Consensus 238 p~~rlYdv~T-~Qcfvsan-----Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa 311 (430)
T KOG0640|consen 238 PTLRLYDVNT-YQCFVSAN-----PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA 311 (430)
T ss_pred CceeEEeccc-eeEeeecC-----cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE
Confidence 9999999988 44332111 1224999999999999999999999999999999988999999876 777889999
Q ss_pred eEcCCCCCCccceeeee---eeeEEecCCceEEEEecCC--cccE-----EEEec-cceeeeec-cCCceeeeEeeecCc
Q 001567 357 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS--SERV-----LIFSF-GKCCLNRG-VSGMTYARQVIYGED 424 (1052)
Q Consensus 357 ~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~--~~~v-----~~~s~-~k~~~s~s-~d~~v~~w~~~~~~~ 424 (1052)
.|..++ +++.|.+ .+++|.+.+++.+....|- .++. ..|.- ..+++... ..+++..||..+++.
T Consensus 312 ~Ftkn~----kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr 387 (430)
T KOG0640|consen 312 VFTKNG----KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR 387 (430)
T ss_pred EEccCC----eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh
Confidence 999998 7777655 8999999999998876542 1111 11111 22222211 123455677666554
Q ss_pred eEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEc
Q 001567 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1052)
Q Consensus 425 ~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~ 480 (1052)
. -.--++||+++|++.-||.+.-+.++|.|-.+ .|--
T Consensus 388 ~-------------------~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 388 V-------------------ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred h-------------------hhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 2 22345899999999999999999999999999 8854
No 58
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.3e-20 Score=185.14 Aligned_cols=200 Identities=12% Similarity=0.143 Sum_probs=159.6
Q ss_pred ccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcC-CCCEEEEEeeCC
Q 001567 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAP-EQQILAVGTRRG 278 (1052)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~sp-d~~~lAsgs~Dg 278 (1052)
+.+|+..|.++.|++ .+++.+++++-|+++|+|+...+... .||.+.| .++||| ...++|++|.||
T Consensus 100 ~kEH~~EV~Svdwn~---------~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 100 FKEHKREVYSVDWNT---------VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred HHhhhhheEEecccc---------ccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 356778898888754 46777888899999999998766543 7999999 999999 578999999999
Q ss_pred eEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEcCCCe-EEEEecccccCceeee
Q 001567 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSP 356 (1052)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp-Dg~~Lasg~~Dg~v~vWd~~~~~-l~~tl~~~~~~~v~s~ 356 (1052)
+.++||++..++.+. +.. |...+.|+.|+. |.+.||+|+.|+.|++||+..-+ .+..|.+| .-.|..+
T Consensus 171 ~l~lwdvr~~gk~~~-i~a--------h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRkv 240 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMS-IEA--------HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRKV 240 (311)
T ss_pred eEEEEEecCCCceeE-EEe--------ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEEE
Confidence 999999998666544 666 999999999998 77899999999999999997643 34455555 2334444
Q ss_pred eEcCCCCCCccceeeeeeeeEEecCCceEEEEecCCcccEEEEeccceeeeeccCCceeeeEeeecCceEEEEecCCcch
Q 001567 357 IVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE 436 (1052)
Q Consensus 357 ~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~ 436 (1052)
.|||.. ...++|+|.|.++++|+...++.
T Consensus 241 k~Sph~---------------------------------------~~lLaSasYDmT~riw~~~~~ds------------ 269 (311)
T KOG0277|consen 241 KFSPHH---------------------------------------ASLLASASYDMTVRIWDPERQDS------------ 269 (311)
T ss_pred ecCcch---------------------------------------hhHhhhccccceEEecccccchh------------
Confidence 444432 34566899999999999876555
Q ss_pred heeeeeccCcccccCCCcEEEEEEcc-CCCEEEEEeCCceE-EEEc
Q 001567 437 LKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDI 480 (1052)
Q Consensus 437 ~~w~~~~~p~~~~~h~~~V~~va~Sp-dG~~lavag~dG~i-lwd~ 480 (1052)
...++..|+.-|..+.||+ ++.++|+.|-|+.+ +|+.
T Consensus 270 -------~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 270 -------AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -------hhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 2466778999999999987 68899999999999 9984
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.85 E-value=6.7e-20 Score=193.89 Aligned_cols=259 Identities=13% Similarity=0.152 Sum_probs=202.5
Q ss_pred CcEEEEEecCCceeeeeecccce--ecCCCCeE-EEEE-cCC--CCEEEEEeeCCeEEEEecCCCCce----eEEEEeec
Q 001567 230 GQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAV-CASI-APE--QQILAVGTRRGVVELYDLAESASL----IRTVSLYD 299 (1052)
Q Consensus 230 G~~~~~~~~d~~i~~w~~~~~~~--~~gh~~~v-~va~-spd--~~~lAsgs~Dg~V~vwd~~~~~~~----~~~l~~~~ 299 (1052)
++.+++++.|+++++|+...... ..||.+++ .+++ .++ ...+++|+.|.++++|.++. +.. +..-++
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~-~~~~~~~~~~~~G-- 191 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV-GENKVKALKVCRG-- 191 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC-chhhhhHHhHhcc--
Confidence 78999999999999998764322 37999999 5544 443 34699999999999999986 432 222234
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcC-------------------------CCeEEEEecccccCcee
Q 001567 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-------------------------GCRLMSTIRQISLSSIS 354 (1052)
Q Consensus 300 ~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~-------------------------~~~l~~tl~~~~~~~v~ 354 (1052)
|.++|-+|+-.+||..+++|+.|.+++||+.. .+.++.++.|| ...|+
T Consensus 192 ------Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH-t~~Vs 264 (423)
T KOG0313|consen 192 ------HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH-TEPVS 264 (423)
T ss_pred ------cccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc-cccee
Confidence 99999999999999999999999999999931 13456788888 89999
Q ss_pred eeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccEEEEec---cceeeeeccCCceeeeEeeecCceEEE
Q 001567 355 SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLV 428 (1052)
Q Consensus 355 s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~~~~~~~l~~ 428 (1052)
++.|++. ..+.|++ +++.||.+++++.....+. ..+.+++. .+.+++||.|..+++||-..++..+
T Consensus 265 ~V~w~d~-----~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~-- 336 (423)
T KOG0313|consen 265 SVVWSDA-----TVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV-- 336 (423)
T ss_pred eEEEcCC-----CceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCCCce--
Confidence 9999985 4666766 9999999999988877653 34444444 7788999999999999998887653
Q ss_pred EecCCcchheeeeeccCcccccCCCcEEEEEEccC-CCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeC
Q 001567 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG 506 (1052)
Q Consensus 429 ~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~Spd-G~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~~ 506 (1052)
..++|.+|++.|.++.++|. -.+|++|+.||++ +||+++-+=.+|.-..++. .|..+.|+.
T Consensus 337 ---------------v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D--Kvl~vdW~~ 399 (423)
T KOG0313|consen 337 ---------------VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND--KVLSVDWNE 399 (423)
T ss_pred ---------------eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc--eEEEEeccC
Confidence 23678999999999999996 4577899999999 9999987645554444432 477889987
Q ss_pred C-EEEEEEEecCCCeEEEEEeeC
Q 001567 507 K-IIVVCNYIDSSNTYELLFYPR 528 (1052)
Q Consensus 507 ~-~li~~~~~~~~~~~elrly~~ 528 (1052)
. .+++| +.+..||+|..
T Consensus 400 ~~~IvSG-----GaD~~l~i~~~ 417 (423)
T KOG0313|consen 400 GGLIVSG-----GADNKLRIFKG 417 (423)
T ss_pred CceEEec-----cCcceEEEecc
Confidence 7 55555 55678888855
No 60
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.85 E-value=3.5e-21 Score=209.38 Aligned_cols=255 Identities=16% Similarity=0.215 Sum_probs=192.8
Q ss_pred ecCCCCeE-EEEEcC-CCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCc
Q 001567 253 ELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (1052)
Q Consensus 253 ~~gh~~~v-~va~sp-d~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~ 330 (1052)
+.||.+.| ++.|.| .+.+|++|+.|+.|+||++-+.+++++++.+ |..+|.+++|+++|..+.|++.|+.
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g--------H~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG--------HRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc--------chhhhhhhhccccCCeeeeeeccee
Confidence 37999999 999999 8999999999999999999877899999999 9999999999999999999999999
Q ss_pred EEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee--eeeEEecCCceEEEEecCCcccEEEEec---ccee
Q 001567 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCC 405 (1052)
Q Consensus 331 v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~ 405 (1052)
+++||+++|++..++... ..++++.|+|++ .+.+++.|+ .++.||..+++++.....|-+.|..+.| ++..
T Consensus 282 lKlwDtETG~~~~~f~~~--~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLD--KVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred eeeeccccceEEEEEecC--CCceeeecCCCC--CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceE
Confidence 999999999998888653 568899999997 334555555 8999999999977776667777766666 8999
Q ss_pred eeeccCCceeeeEeeecCceEEEEecC--Cc------chhee-------------ee-----eccCcccccCCC--cEEE
Q 001567 406 LNRGVSGMTYARQVIYGEDRLLVVQSE--DT------DELKI-------------LH-----LNLPVSYISQNW--PVQH 457 (1052)
Q Consensus 406 ~s~s~d~~v~~w~~~~~~~~l~~~~~~--~~------~~~~w-------------~~-----~~~p~~~~~h~~--~V~~ 457 (1052)
++.+.|+++++|+...+-.--++.... .. +...| .. ...-..+.||.- .-..
T Consensus 358 issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 358 ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred eeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 999999999999876543322221111 00 01111 00 011135667743 3456
Q ss_pred EEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeC---CEEEEEEEecCCCeEEEEEee
Q 001567 458 VAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG---KIIVVCNYIDSSNTYELLFYP 527 (1052)
Q Consensus 458 va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~~---~~li~~~~~~~~~~~elrly~ 527 (1052)
+.|||||++|++|..+|.+ +||.++-+ ++.... ..+-.|+++.|+. ..+++|+ -+..|.+|.
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt~k--l~~~lk-ah~~~ci~v~wHP~e~Skvat~~-----w~G~Ikiwd 503 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKTTK--LVSKLK-AHDQPCIGVDWHPVEPSKVATCG-----WDGLIKIWD 503 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechhhh--hhhccc-cCCcceEEEEecCCCcceeEecc-----cCceeEecC
Confidence 8999999999999999999 99987753 222111 1124588999974 4667663 346677773
No 61
>PTZ00421 coronin; Provisional
Probab=99.85 E-value=1.9e-19 Score=211.97 Aligned_cols=200 Identities=14% Similarity=0.144 Sum_probs=159.2
Q ss_pred ecCCCCeE-EEEEcC-CCCEEEEEeeCCeEEEEecCCCC------ceeEEEEeecCCCCCCCCCCeeEEEECCCC-CEEE
Q 001567 253 ELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESA------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFA 323 (1052)
Q Consensus 253 ~~gh~~~v-~va~sp-d~~~lAsgs~Dg~V~vwd~~~~~------~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg-~~La 323 (1052)
+.||.+.| +++|+| ++++||+|+.||+|++||+.+.+ ..+..+.+ |.+.|.+++|+|++ ..||
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g--------H~~~V~~l~f~P~~~~iLa 142 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG--------HTKKVGIVSFHPSAMNVLA 142 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC--------CCCcEEEEEeCcCCCCEEE
Confidence 36899999 999999 88999999999999999997622 23455666 99999999999986 6999
Q ss_pred EEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccE---E
Q 001567 324 VGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV---L 397 (1052)
Q Consensus 324 sg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v---~ 397 (1052)
+|+.|++|+|||+.++....++.+| ...|.+++|+|++ ..+++|+ ++++||+.+++.+....+|.... .
T Consensus 143 Sgs~DgtVrIWDl~tg~~~~~l~~h-~~~V~sla~spdG----~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~ 217 (493)
T PTZ00421 143 SAGADMVVNVWDVERGKAVEVIKCH-SDQITSLEWNLDG----SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRC 217 (493)
T ss_pred EEeCCCEEEEEECCCCeEEEEEcCC-CCceEEEEEECCC----CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEE
Confidence 9999999999999999988899887 6789999999998 8888887 89999999998888877776542 2
Q ss_pred EEec-cceeeeec----cCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccc-cCCCcEEEEEEccCCCEEEEEe
Q 001567 398 IFSF-GKCCLNRG----VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAASKDGMFLAVAG 471 (1052)
Q Consensus 398 ~~s~-~k~~~s~s----~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~-~h~~~V~~va~SpdG~~lavag 471 (1052)
.+.. ...+++++ .|+.+++||+......+ .... .+...+....|++||++|++||
T Consensus 218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~-------------------~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY-------------------STVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce-------------------eEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 3333 44555543 47899999986544311 1111 2233466678999999999998
Q ss_pred C-CceE-EEEccCCc
Q 001567 472 L-HGLI-LYDIRQKK 484 (1052)
Q Consensus 472 ~-dG~i-lwd~~s~~ 484 (1052)
. ||.+ +||+.+++
T Consensus 279 kgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 279 KGEGNIRCFELMNER 293 (493)
T ss_pred eCCCeEEEEEeeCCc
Confidence 5 9999 99998765
No 62
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.1e-17 Score=185.31 Aligned_cols=407 Identities=15% Similarity=0.204 Sum_probs=249.5
Q ss_pred CceEEEEeeCCeEEEEE-cCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEec
Q 001567 21 SQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1052)
Q Consensus 21 ~~~vv~fSpdg~llA~~-sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~ 99 (1052)
.--.++||.+.+.||++ +++.|.||+.. +.=.+-...- ..+.+.+-+++|+ +|..|.+...+|.|.-||+...
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~-~~w~~~~vi~----g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLS-NNWFLEPVIH----GPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccC-CCceeeEEEe----cCCCCceeeEEEc-cCCeEEeecCCceEEEEecccC
Confidence 33447899888889988 78999999986 4311111110 1234567799999 6678888899999999999876
Q ss_pred CceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccc
Q 001567 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1052)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i 179 (1052)
+.... .+..+-.+|++ |+.+.++.+++|+.||.+..++-..+.....
T Consensus 101 k~~~~---~d~~gg~IWsi------------------ai~p~~~~l~IgcddGvl~~~s~~p~~I~~~------------ 147 (691)
T KOG2048|consen 101 KQKYN---IDSNGGAIWSI------------------AINPENTILAIGCDDGVLYDFSIGPDKITYK------------ 147 (691)
T ss_pred ceeEE---ecCCCcceeEE------------------EeCCccceEEeecCCceEEEEecCCceEEEE------------
Confidence 54322 12223334443 4555678899999999655543332221100
Q ss_pred eeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee------
Q 001567 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------ 253 (1052)
Q Consensus 180 ~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~------ 253 (1052)
..+..++++|.++.| .++|..++.|+.|+.|++||...+...
T Consensus 148 ----------------------r~l~rq~sRvLslsw----------~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~ 195 (691)
T KOG2048|consen 148 ----------------------RSLMRQKSRVLSLSW----------NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQ 195 (691)
T ss_pred ----------------------eecccccceEEEEEe----------cCCccEEEecccCceEEEEEcCCCceEEEeeec
Confidence 112334567777665 788998999999999999998876543
Q ss_pred ---cCCCC--eE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 001567 254 ---LGSGD--AV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1052)
Q Consensus 254 ---~gh~~--~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~ 327 (1052)
.+..+ .| ++.|= ....||+|...|+|++||-.. +.+++..+. |.+.|.|++-++++.++.+++.
T Consensus 196 ~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~-gTLiqS~~~--------h~adVl~Lav~~~~d~vfsaGv 265 (691)
T KOG2048|consen 196 LDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIF-GTLIQSHSC--------HDADVLALAVADNEDRVFSAGV 265 (691)
T ss_pred ccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccC-cchhhhhhh--------hhcceeEEEEcCCCCeEEEccC
Confidence 11112 22 55554 456799999999999999988 888887777 9999999999999999999999
Q ss_pred CCcEEEEEcCCCeE---EEEecccccCceeeeeEcCCC----------------C-----------CCccceeeee----
Q 001567 328 SRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQ----------------D-----------CKYEPLMSGT---- 373 (1052)
Q Consensus 328 Dg~v~vWd~~~~~l---~~tl~~~~~~~v~s~~~sp~~----------------~-----------~~~~~l~sg~---- 373 (1052)
|+.+.-+...++.- ....+.+|...|.+++..++. . ......+++.
T Consensus 266 d~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~ 345 (691)
T KOG2048|consen 266 DPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENR 345 (691)
T ss_pred CCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccce
Confidence 99999998876633 222333335556555543321 0 0001122222
Q ss_pred eeeEEecCCceEEEEecC----Cccc--EEEEec-cc---eeeeeccCCc---------eeeeEeeecC-----------
Q 001567 374 SMMQWDEYGYRLYAIEEG----SSER--VLIFSF-GK---CCLNRGVSGM---------TYARQVIYGE----------- 423 (1052)
Q Consensus 374 ~~~~W~~~~~~l~~~~~~----~~~~--v~~~s~-~k---~~~s~s~d~~---------v~~w~~~~~~----------- 423 (1052)
....|...+..+|..... +.+. ++.+.. .+ +..+.|+||. .+++.+....
T Consensus 346 L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~ 425 (691)
T KOG2048|consen 346 LLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVP 425 (691)
T ss_pred EEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccch
Confidence 455677777666665432 2121 122222 11 1223334432 2233222211
Q ss_pred ---------------ceEEEEecCCcchheeeeecc--Cc-------ccccCCCcEEEEEEccCCCEEEEEeCCceE-EE
Q 001567 424 ---------------DRLLVVQSEDTDELKILHLNL--PV-------SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 478 (1052)
Q Consensus 424 ---------------~~l~~~~~~~~~~~~w~~~~~--p~-------~~~~h~~~V~~va~SpdG~~lavag~dG~i-lw 478 (1052)
+++++.. .+...|+.++. |. .-.+...+|..++.||||+|+|+++.+|.| +|
T Consensus 426 ~~~~~a~~i~ftid~~k~~~~s---~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~ 502 (691)
T KOG2048|consen 426 LALLDASAISFTIDKNKLFLVS---KNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVY 502 (691)
T ss_pred hhhccceeeEEEecCceEEEEe---cccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEE
Confidence 1111111 01122322211 11 111345679999999999999999999999 99
Q ss_pred EccCCcEEEecCccceeeeEEEEEE-EeCCEEEEE
Q 001567 479 DIRQKKWRVFGDITQEQKIQSKGLL-WLGKIIVVC 512 (1052)
Q Consensus 479 d~~s~~w~~f~~~~~e~~~~v~gl~-W~~~~li~~ 512 (1052)
++.+++-+.+..... ..++..+.. |..+.++++
T Consensus 503 nl~~~~~~~l~~rln-~~vTa~~~~~~~~~~lvva 536 (691)
T KOG2048|consen 503 NLETLESHLLKVRLN-IDVTAAAFSPFVRNRLVVA 536 (691)
T ss_pred EcccceeecchhccC-cceeeeeccccccCcEEEE
Confidence 999998887764332 333444444 777777776
No 63
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=2.2e-19 Score=181.44 Aligned_cols=257 Identities=14% Similarity=0.193 Sum_probs=193.0
Q ss_pred CCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee-----cCCCCeE-EEEEcCC-CCEEEEEeeCC
Q 001567 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPE-QQILAVGTRRG 278 (1052)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-----~gh~~~v-~va~spd-~~~lAsgs~Dg 278 (1052)
++...+.+++ +..||..+++++.|+++++|+....... .||.+.| -++++|. ..++|+++.|.
T Consensus 18 ~~~~~v~Sv~----------wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk 87 (313)
T KOG1407|consen 18 GHVQKVHSVA----------WNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDK 87 (313)
T ss_pred hhhhcceEEE----------EcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCc
Confidence 4455566655 4789999999999999999988765332 6899999 8888874 67899999999
Q ss_pred eEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeE
Q 001567 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (1052)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~ 358 (1052)
+|++||+.. ++++..... ++.-.-+.|||||.++|+++.|..|...|..+.+.+.+.+.. -.++.+.+
T Consensus 88 ~ir~wd~r~-~k~~~~i~~---------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--~e~ne~~w 155 (313)
T KOG1407|consen 88 TIRIWDIRS-GKCTARIET---------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK--FEVNEISW 155 (313)
T ss_pred eEEEEEecc-CcEEEEeec---------cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--ceeeeeee
Confidence 999999998 888877664 566677899999999999999999999999988777665543 45777777
Q ss_pred cCCCCCCccceeee-eeeeEEecCCceEEEEecCCcccEE--EEec-cceeeeeccCCceeeeEeeecCceEEEEecCCc
Q 001567 359 KPNQDCKYEPLMSG-TSMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (1052)
Q Consensus 359 sp~~~~~~~~l~sg-~~~~~W~~~~~~l~~~~~~~~~~v~--~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~ 434 (1052)
+.++ +.-++-+| +++-+-....-+.+..+..|...-+ .|++ |+++++|+.|..+.+||+..-
T Consensus 156 ~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL------------ 221 (313)
T KOG1407|consen 156 NNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL------------ 221 (313)
T ss_pred cCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh------------
Confidence 7443 11233344 2333333335566677778876654 4555 999999999999999996421
Q ss_pred chheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCc--EEEecCccceeeeEEEEEEEeCCEEEE
Q 001567 435 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGLLWLGKIIVV 511 (1052)
Q Consensus 435 ~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~--w~~f~~~~~e~~~~v~gl~W~~~~li~ 511 (1052)
.+...+.-+.||||.++||-||++||+|++|-.| |=++.+|. |+.- .+ -....++|+.+..+.
T Consensus 222 --------iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~----~~--~~t~tVAWHPk~~LL 287 (313)
T KOG1407|consen 222 --------ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP----CE--GPTFTVAWHPKRPLL 287 (313)
T ss_pred --------hhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee----cc--CCceeEEecCCCcee
Confidence 1244566789999999999999999999999999 99999885 3211 11 112358999776555
Q ss_pred E
Q 001567 512 C 512 (1052)
Q Consensus 512 ~ 512 (1052)
+
T Consensus 288 A 288 (313)
T KOG1407|consen 288 A 288 (313)
T ss_pred e
Confidence 4
No 64
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.84 E-value=4.1e-19 Score=179.99 Aligned_cols=252 Identities=17% Similarity=0.186 Sum_probs=196.5
Q ss_pred ccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCe
Q 001567 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGV 279 (1052)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~ 279 (1052)
+.+|..+++.+.| ..+|.++++++.|.++.+|-...++++ .||.++| |++++-+.+.+.+|++|.+
T Consensus 6 l~GHERplTqiKy----------N~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t 75 (327)
T KOG0643|consen 6 LQGHERPLTQIKY----------NREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQT 75 (327)
T ss_pred cccCccccceEEe----------cCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccce
Confidence 4567778888887 679999999999999999987777766 7999999 9999999999999999999
Q ss_pred EEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC-----CcEEEEEcC-------CCeEEEEecc
Q 001567 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-----RGLTVWSVS-------GCRLMSTIRQ 347 (1052)
Q Consensus 280 V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D-----g~v~vWd~~-------~~~l~~tl~~ 347 (1052)
+++||+.+ ++.+.+++. ..+|..+.|+++|++++...++ +.|.++++. +..+...+..
T Consensus 76 ~kLWDv~t-Gk~la~~k~---------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 76 AKLWDVET-GKQLATWKT---------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred eEEEEcCC-CcEEEEeec---------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence 99999998 988888875 6789999999999987776543 579999986 4445556655
Q ss_pred cccCceeeeeEcCCCCCCccceeeee---eeeEEecCCce-EEEEecCCcccE--EEEec-cceeeeeccCCceeeeEee
Q 001567 348 ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR-LYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVI 420 (1052)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~-l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~~~ 420 (1052)
+ .+.+++..|+|-+ +.+++|- .+..|++.+++ ++.....|...| ++++. ....+|+|.|.+-++||+.
T Consensus 146 ~-~skit~a~Wg~l~----~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 146 P-DSKITSALWGPLG----ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR 220 (327)
T ss_pred C-ccceeeeeecccC----CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecc
Confidence 5 5778888999988 8888886 89999998874 444556788888 55555 6788999999999999975
Q ss_pred ecC--------------------ceEEEEecCCcchh--------e-----eeee--ccCcccccCCCcEEEEEEccCCC
Q 001567 421 YGE--------------------DRLLVVQSEDTDEL--------K-----ILHL--NLPVSYISQNWPVQHVAASKDGM 465 (1052)
Q Consensus 421 ~~~--------------------~~l~~~~~~~~~~~--------~-----w~~~--~~p~~~~~h~~~V~~va~SpdG~ 465 (1052)
.-. +.+.+..|.+..+. + .+.+ +-...+.+|-+||+++||+|||+
T Consensus 221 tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk 300 (327)
T KOG0643|consen 221 TLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK 300 (327)
T ss_pred ceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc
Confidence 421 11222222222111 0 0111 12346789999999999999999
Q ss_pred EEEEEeCCceE-EEEc
Q 001567 466 FLAVAGLHGLI-LYDI 480 (1052)
Q Consensus 466 ~lavag~dG~i-lwd~ 480 (1052)
..++||.||.+ +.-.
T Consensus 301 sYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 301 SYSSGGEDGYVRLHHF 316 (327)
T ss_pred ccccCCCCceEEEEEe
Confidence 99999999999 6644
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.84 E-value=2.1e-19 Score=211.67 Aligned_cols=266 Identities=17% Similarity=0.233 Sum_probs=217.2
Q ss_pred eEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEE
Q 001567 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW 213 (1052)
Q Consensus 134 ~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~ 213 (1052)
.+.|.....+.+..++.++.++. |+....... ...+.+|...|..
T Consensus 210 ~~~~~q~~~~~~~~~s~~~tl~~--~~~~~~~~i---------------------------------~~~l~GH~g~V~~ 254 (537)
T KOG0274|consen 210 VVLCLQLHDGFFKSGSDDSTLHL--WDLNNGYLI---------------------------------LTRLVGHFGGVWG 254 (537)
T ss_pred hhhhheeecCeEEecCCCceeEE--eecccceEE---------------------------------EeeccCCCCCcee
Confidence 34555556677888888888855 554332211 1235677788888
Q ss_pred EEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCC
Q 001567 214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA 289 (1052)
Q Consensus 214 i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~ 289 (1052)
+++ ..-+..+++++.|.++++||..++++. .||.+.+ |+.. ....+++|+.|.+|++|++++ +
T Consensus 255 l~~----------~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n-~ 321 (537)
T KOG0274|consen 255 LAF----------PSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTN-G 321 (537)
T ss_pred EEE----------ecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccC-c
Confidence 775 334778999999999999999988875 7899999 7764 445688899999999999997 8
Q ss_pred ceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccce
Q 001567 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (1052)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l 369 (1052)
..++++.+ |+++|+++... +.++++|+.|++|+||++..++++.++.+| ...|.++.+.+. ..+
T Consensus 322 ~~l~l~~~--------h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH-~~~V~sl~~~~~-----~~~ 385 (537)
T KOG0274|consen 322 ACLNLLRG--------HTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH-TGRVYSLIVDSE-----NRL 385 (537)
T ss_pred ceEEEecc--------ccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCC-cceEEEEEecCc-----ceE
Confidence 89999988 99999999988 889999999999999999999999999998 889999988663 467
Q ss_pred eeee---eeeEEecCCc-eEEEEecCCcccEEEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeecc
Q 001567 370 MSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL 444 (1052)
Q Consensus 370 ~sg~---~~~~W~~~~~-~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~ 444 (1052)
.+|+ ++++||.++. +++.+..+|..-+..+.+ .+.+++++.|+++++||...++.
T Consensus 386 ~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~-------------------- 445 (537)
T KOG0274|consen 386 LSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGEC-------------------- 445 (537)
T ss_pred EeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCce--------------------
Confidence 7777 8999999999 999999999888877777 88999999999999999887765
Q ss_pred Cccccc-CCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcE
Q 001567 445 PVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (1052)
Q Consensus 445 p~~~~~-h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w 485 (1052)
..++.+ |...|..+++. ...+++++.+|.+ +||+.++.-
T Consensus 446 ~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 446 LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 334444 56778777776 5788899999999 999998764
No 66
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.5e-19 Score=184.08 Aligned_cols=284 Identities=13% Similarity=0.141 Sum_probs=187.8
Q ss_pred eEEEEeeCCeEEEEE-cCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeC-CcEEEEEEEEecC
Q 001567 23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS-SLYLHIFKVQITE 100 (1052)
Q Consensus 23 ~vv~fSpdg~llA~~-sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~-dg~l~i~~l~~~~ 100 (1052)
-.++||.||+.||++ +|++|+||+++ . .....+ |....--++|.-+.|+|+||-+.+++... .+.|++|.+....
T Consensus 90 t~~~FsSdGK~lat~~~Dr~Ir~w~~~-D-F~~~eH-r~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~ 166 (420)
T KOG2096|consen 90 TDVAFSSDGKKLATISGDRSIRLWDVR-D-FENKEH-RCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKT 166 (420)
T ss_pred eeeEEcCCCceeEEEeCCceEEEEecc-h-hhhhhh-hHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence 448999999999998 58899999996 3 111122 22221123677889999999998777654 4569999987544
Q ss_pred ceeecCCCCCCCceeeeEeeeeccccccccccceE--EEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCcc
Q 001567 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (1052)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~ 178 (1052)
...+.... ......++.-.. ...+ ..++..+..|+.++.|..|.+|+..|...+.
T Consensus 167 dG~~~~~~----v~~D~~~f~~kh-------~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~------------ 223 (420)
T KOG2096|consen 167 DGSGSHHF----VHIDNLEFERKH-------QVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQS------------ 223 (420)
T ss_pred cCCCCccc----ccccccccchhc-------ccceEEEeecCCceEEEEecCCCcEEEEecCCceeee------------
Confidence 32111000 001111111111 1112 2445566788888888888775444332111
Q ss_pred ceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeecccc-------
Q 001567 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID------- 251 (1052)
Q Consensus 179 i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~------- 251 (1052)
|.-+...++.+++||||+++++++-...+++|+..-.+
T Consensus 224 -----------------------------------idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev 268 (420)
T KOG2096|consen 224 -----------------------------------IDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEV 268 (420)
T ss_pred -----------------------------------eccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhh
Confidence 11112224457899999999999888889999875322
Q ss_pred ----eecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCC---CceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEE
Q 001567 252 ----KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES---ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA 323 (1052)
Q Consensus 252 ----~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~---~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~La 323 (1052)
.+.||..+| ..+|||+.+.+++.+.||++||||++-. ++-..+++....+.. +..+.-..++.||.|+.||
T Consensus 269 ~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~-aag~~p~RL~lsP~g~~lA 347 (420)
T KOG2096|consen 269 KRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLH-AAGSEPVRLELSPSGDSLA 347 (420)
T ss_pred hhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchh-hcCCCceEEEeCCCCcEEE
Confidence 127999999 9999999999999999999999998631 111111221100111 1122234899999999999
Q ss_pred EEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee
Q 001567 324 VGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1052)
Q Consensus 324 sg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (1052)
.+.. .+++++....+...-+++..+...|++++|+++| .++++++
T Consensus 348 ~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g----~~~atcG 392 (420)
T KOG2096|consen 348 VSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDG----KYIATCG 392 (420)
T ss_pred eecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCC----cEEeeec
Confidence 9887 6899999998887777777557789999999999 8888765
No 67
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.4e-20 Score=194.03 Aligned_cols=283 Identities=14% Similarity=0.204 Sum_probs=208.8
Q ss_pred CCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEE
Q 001567 255 GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (1052)
Q Consensus 255 gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~v 333 (1052)
|...-+ |..|||||++|++|+.||-|.||+..+ ++...-++-..-..-..+..+|.|++||.|...||+|+.||.|+|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~-GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTT-GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhcc-chhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 445556 999999999999999999999999977 654332221111111237899999999999999999999999999
Q ss_pred EEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccEE--EEec-cceeee
Q 001567 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLN 407 (1052)
Q Consensus 334 Wd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~--~~s~-~k~~~s 407 (1052)
|.+.+|.++..+.-.|+..|+++.|+.++ ..+.|++ ++++-+...|+++....||++.|. .|.. |..+++
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~----SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDN----SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCc----chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence 99999999999885458899999999998 6777777 899999999999999999999984 4444 899999
Q ss_pred eccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccc--cCCCcEEEEEEcc-CCCEEEEEeCCceE-EEEccCC
Q 001567 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI--SQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQK 483 (1052)
Q Consensus 408 ~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~--~h~~~V~~va~Sp-dG~~lavag~dG~i-lwd~~s~ 483 (1052)
++.|+++++|+..+++. ..+|. +...+|.++-.-| +-..++++.+..++ +-+++..
T Consensus 366 aSsDgtvkvW~~KtteC--------------------~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ 425 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTEC--------------------LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ 425 (508)
T ss_pred ecCCccEEEecCcchhh--------------------hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce
Confidence 99999999999877665 33333 4567888887755 56789999999999 9999888
Q ss_pred cEEEecCcccee-eeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCC--CCCCcceeEEeecCCccEEEEeeCCEEEEEE
Q 001567 484 KWRVFGDITQEQ-KIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTY 560 (1052)
Q Consensus 484 ~w~~f~~~~~e~-~~~v~gl~W~~~~li~~~~~~~~~~~elrly~~~--~ld~~~~l~~~~~~~~~~~~s~~~~~llv~~ 560 (1052)
--+.|....-|. +|....+.--|+.+-+. +.+..+.+|+.. .|......+.. ..--+..-|.++.+..++
T Consensus 426 vVrsfsSGkREgGdFi~~~lSpkGewiYci-----gED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHPHqNllAsYs 498 (508)
T KOG0275|consen 426 VVRSFSSGKREGGDFINAILSPKGEWIYCI-----GEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHPHQNLLASYS 498 (508)
T ss_pred EEeeeccCCccCCceEEEEecCCCcEEEEE-----ccCcEEEEEEeecCceeeeeecccc--cccccccCcccchhhhhc
Confidence 778886544443 34433444445555443 344556666653 33322111111 111133456677777788
Q ss_pred cCCeEEEEE
Q 001567 561 RPFDVHIFH 569 (1052)
Q Consensus 561 ~d~~i~l~~ 569 (1052)
.||.+++|.
T Consensus 499 EDgllKLWk 507 (508)
T KOG0275|consen 499 EDGLLKLWK 507 (508)
T ss_pred ccchhhhcC
Confidence 999999984
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=6.3e-19 Score=200.09 Aligned_cols=260 Identities=22% Similarity=0.267 Sum_probs=197.4
Q ss_pred CeEEEEEcCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCC
Q 001567 31 NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQP 110 (1052)
Q Consensus 31 g~llA~~sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~ 110 (1052)
...+|++....|++|+.. .+. +.... .+. .+.++++.|+|+|+.||+|+.+|+|.|||+......-.
T Consensus 188 ~n~laValg~~vylW~~~-s~~-v~~l~----~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~------ 254 (484)
T KOG0305|consen 188 ANVLAVALGQSVYLWSAS-SGS-VTELC----SFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT------ 254 (484)
T ss_pred CCeEEEEecceEEEEecC-CCc-eEEeE----ecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc------
Confidence 447888888899999986 332 11111 111 46788999999999999999999999999874332111
Q ss_pred CCceeeeEeeeecccccccc-ccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCc
Q 001567 111 SGLFFIKISLVLNEQLPFAE-KGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG 189 (1052)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~ 189 (1052)
+.+ +...|.|++..+..+.+|+.+|.+..+
T Consensus 255 -----------------~~~~h~~rvg~laW~~~~lssGsr~~~I~~~-------------------------------- 285 (484)
T KOG0305|consen 255 -----------------LRGSHASRVGSLAWNSSVLSSGSRDGKILNH-------------------------------- 285 (484)
T ss_pred -----------------ccCCcCceeEEEeccCceEEEecCCCcEEEE--------------------------------
Confidence 111 344566666665556666666655442
Q ss_pred ceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeecccc----eecCCCCeE-EEEE
Q 001567 190 LASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----KELGSGDAV-CASI 264 (1052)
Q Consensus 190 l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~----~~~gh~~~v-~va~ 264 (1052)
|....+ .+.+|...| .+.|
T Consensus 286 --------------------------------------------------------dvR~~~~~~~~~~~H~qeVCgLkw 309 (484)
T KOG0305|consen 286 --------------------------------------------------------DVRISQHVVSTLQGHRQEVCGLKW 309 (484)
T ss_pred --------------------------------------------------------EEecchhhhhhhhcccceeeeeEE
Confidence 111110 025788888 8899
Q ss_pred cCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC-CCCEEEEEE--cCCcEEEEEcCCCeE
Q 001567 265 APEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGW--KSRGLTVWSVSGCRL 341 (1052)
Q Consensus 265 spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp-Dg~~Lasg~--~Dg~v~vWd~~~~~l 341 (1052)
++|+.++|+|+.|+.+.|||... .....++.. |++.|.+++|+| ....||+|+ .|+.|++||+.++..
T Consensus 310 s~d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~~--------H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~ 380 (484)
T KOG0305|consen 310 SPDGNQLASGGNDNVVFIWDGLS-PEPKFTFTE--------HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR 380 (484)
T ss_pred CCCCCeeccCCCccceEeccCCC-ccccEEEec--------cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE
Confidence 99999999999999999999966 667777777 999999999999 677999975 689999999999998
Q ss_pred EEEecccccCceeeeeEcCCCCCCccceeeee----eeeEEecCCceEEEEecCCcccEEE--Eec-cceeeeeccCCce
Q 001567 342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMT 414 (1052)
Q Consensus 342 ~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~~~~~v~~--~s~-~k~~~s~s~d~~v 414 (1052)
+.++... +.|.++.|++.. .+++.+-+ .+.+|...+..+.....+|..+|+. +++ +..+++++.|.++
T Consensus 381 i~~vdtg--sQVcsL~Wsk~~---kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETl 455 (484)
T KOG0305|consen 381 IDSVDTG--SQVCSLIWSKKY---KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETL 455 (484)
T ss_pred ecccccC--CceeeEEEcCCC---CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcE
Confidence 8887654 679999999986 23444333 7899999999999999999999954 455 8999999999999
Q ss_pred eeeEeeec
Q 001567 415 YARQVIYG 422 (1052)
Q Consensus 415 ~~w~~~~~ 422 (1052)
++|.+-..
T Consensus 456 rfw~~f~~ 463 (484)
T KOG0305|consen 456 RFWNLFDE 463 (484)
T ss_pred EeccccCC
Confidence 99997653
No 69
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.4e-19 Score=206.72 Aligned_cols=202 Identities=14% Similarity=0.176 Sum_probs=143.1
Q ss_pred ccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee--cCCCCeE-EEEEcC-CCCEEEEEeeCCe
Q 001567 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAP-EQQILAVGTRRGV 279 (1052)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~gh~~~v-~va~sp-d~~~lAsgs~Dg~ 279 (1052)
..+|...|.++.| +...++++++-|.|+|+|+....+++ ..|.+.| ||+|+| |.+++++||-||.
T Consensus 365 f~GHt~DILDlSW-----------SKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~K 433 (712)
T KOG0283|consen 365 FKGHTADILDLSW-----------SKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGK 433 (712)
T ss_pred hhccchhheeccc-----------ccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccc
Confidence 3577788888887 45667889999999999999877666 6799999 999999 7899999999999
Q ss_pred EEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEc
Q 001567 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (1052)
Q Consensus 280 V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~s 359 (1052)
||||++.+ .+... +.. -..-|++++|+|||++.++|+.+|.++++++.+.++.....-+ .+
T Consensus 434 vRiWsI~d-~~Vv~-W~D--------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~---------~~ 494 (712)
T KOG0283|consen 434 VRLWSISD-KKVVD-WND--------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR---------LH 494 (712)
T ss_pred eEEeecCc-CeeEe-ehh--------hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe---------ec
Confidence 99999976 33222 221 2477999999999999999999999999999998766543321 00
Q ss_pred CCCCCCccceeeeeeeeEEecCCceEEEEecCCcccEEEE--eccc--eeeeeccCCceeeeEeeecCceEEEEecCCcc
Q 001567 360 PNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIF--SFGK--CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (1052)
Q Consensus 360 p~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~--s~~k--~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~ 435 (1052)
+. +. ..|. +|..| .++. .++-.+.|..|++.|....+
T Consensus 495 ~~-----Kk---------------------~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~------------ 535 (712)
T KOG0283|consen 495 NK-----KK---------------------KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD------------ 535 (712)
T ss_pred cC-----cc---------------------ccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh------------
Confidence 00 00 0111 34222 2222 24444566677776653222
Q ss_pred hheeeeeccCcccccCCC--cEEEEEEccCCCEEEEEeCCceE-EEEccC
Q 001567 436 ELKILHLNLPVSYISQNW--PVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1052)
Q Consensus 436 ~~~w~~~~~p~~~~~h~~--~V~~va~SpdG~~lavag~dG~i-lwd~~s 482 (1052)
+...|.|+.. .=..++|+.||++|++|++|..+ +|+...
T Consensus 536 --------lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 536 --------LVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred --------hhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 1334443221 12357899999999999999999 999854
No 70
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=9.4e-18 Score=165.58 Aligned_cols=242 Identities=15% Similarity=0.225 Sum_probs=167.9
Q ss_pred eEEEEeeCCeEEEEEc-CCcEEEeecCC---c--e------eEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcE
Q 001567 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQ---H--K------VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLY 90 (1052)
Q Consensus 23 ~vv~fSpdg~llA~~s-d~~v~IW~~~~---~--~------~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~ 90 (1052)
..|+|.|.|.+.|+++ ..+.+|--... + . -+...++|.. -+.|.+++++|||+|..||+++.|.+
T Consensus 36 rav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~k---hhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 36 RAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNK---HHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred eeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeecc---ccCccEEEEEecCccCeEEecCCCce
Confidence 4488999999999996 45788764310 0 0 1233445542 24699999999999999999999999
Q ss_pred EEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEe--e---cCCeEEEEecCCcEEEEeccCcccc
Q 001567 91 LHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--S---DNKHMLLGLSDGSLYSISWKGEFYG 165 (1052)
Q Consensus 91 l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~---d~~~llv~t~dg~v~~~~wd~~~~~ 165 (1052)
|++...+.+... ..+| .+++ .-+++.|..++ - .+..++++...|...++.-|-....
T Consensus 113 ik~l~fn~dt~~--~~g~--------dle~--------nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 113 IKVLPFNADTCN--ATGH--------DLEF--------NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EEEEeccccccc--ccCc--------ceee--------eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 998776533321 1111 1111 12233343332 1 2334565555555554433322211
Q ss_pred ceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeee
Q 001567 166 AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLA 245 (1052)
Q Consensus 166 ~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w 245 (1052)
.+. -+.++.+.|..+ .+=+|.++++++.|.+++.|
T Consensus 175 ~~~----------------------------------a~sghtghilal-----------yswn~~m~~sgsqdktirfw 209 (350)
T KOG0641|consen 175 GFH----------------------------------ALSGHTGHILAL-----------YSWNGAMFASGSQDKTIRFW 209 (350)
T ss_pred cce----------------------------------eecCCcccEEEE-----------EEecCcEEEccCCCceEEEE
Confidence 110 112344455443 35578999999999999999
Q ss_pred eeccccee---------cC-CCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEE
Q 001567 246 EFIKIDKE---------LG-SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA 314 (1052)
Q Consensus 246 ~~~~~~~~---------~g-h~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~ 314 (1052)
|...+.+. .| ...+| .+++.|.|++||+|-.|....+||++. ++.++.+.. |+..|.|+.
T Consensus 210 dlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~p--------hsadir~vr 280 (350)
T KOG0641|consen 210 DLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHP--------HSADIRCVR 280 (350)
T ss_pred eeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCC--------CccceeEEE
Confidence 98765443 11 13567 999999999999999999999999997 888998887 999999999
Q ss_pred ECCCCCEEEEEEcCCcEEEEEcCCC
Q 001567 315 WTPDNSAFAVGWKSRGLTVWSVSGC 339 (1052)
Q Consensus 315 ~SpDg~~Lasg~~Dg~v~vWd~~~~ 339 (1052)
|||...++.+++.|..|++-|+.|-
T Consensus 281 fsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 281 FSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred eCCCceEEEEecccceEEEeecccc
Confidence 9999999999999999999999874
No 71
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=5.9e-19 Score=175.67 Aligned_cols=234 Identities=15% Similarity=0.184 Sum_probs=194.8
Q ss_pred cCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeE
Q 001567 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVV 280 (1052)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V 280 (1052)
..++.+|+.+.| .-||++.++++.|.++++|+...+..+ .||...| .++.+.|...+|+|+.|..|
T Consensus 14 ~~~qgaV~avry----------N~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 14 DCAQGAVRAVRY----------NVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred cccccceEEEEE----------ccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceE
Confidence 345666766554 789999999999999999999887655 7999999 99999999999999999999
Q ss_pred EEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCC--eEEEEecccccCceeeeeE
Q 001567 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIV 358 (1052)
Q Consensus 281 ~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~--~l~~tl~~~~~~~v~s~~~ 358 (1052)
.+||+.+ ++..+.+.+ |.+.|+.++|.-+...+++|+-|.++++||-.+. ++++.+... ...|.++..
T Consensus 84 ~vwDV~T-Gkv~Rr~rg--------H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea-~D~V~Si~v 153 (307)
T KOG0316|consen 84 QVWDVNT-GKVDRRFRG--------HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA-KDGVSSIDV 153 (307)
T ss_pred EEEEccc-Ceeeeeccc--------ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh-cCceeEEEe
Confidence 9999998 999999998 9999999999999999999999999999998654 467777665 677888776
Q ss_pred cCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccEEEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCc
Q 001567 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (1052)
Q Consensus 359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~ 434 (1052)
.. ..++.|+ +++.+++..|++..-.-+|.-.-+.|+. +...+.++.|+++++-|-.+|+
T Consensus 154 ~~------heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk----------- 216 (307)
T KOG0316|consen 154 AE------HEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGK----------- 216 (307)
T ss_pred cc------cEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhH-----------
Confidence 43 3455555 8999999999888777776544466666 8888999999999987755554
Q ss_pred chheeeeeccCcccccCCCcE--EEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 001567 435 DELKILHLNLPVSYISQNWPV--QHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1052)
Q Consensus 435 ~~~~w~~~~~p~~~~~h~~~V--~~va~SpdG~~lavag~dG~i-lwd~~s~~ 484 (1052)
+...|+||...= ..++++....++++|++||.+ +||+....
T Consensus 217 ---------lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 217 ---------LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred ---------HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 377899987643 346788889999999999999 99997654
No 72
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=1.8e-18 Score=174.88 Aligned_cols=256 Identities=13% Similarity=0.195 Sum_probs=181.7
Q ss_pred ceEEEEeeCCeEEEEEc-CCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCc-cEEEEEeCCcEEEEEEEEec
Q 001567 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQIT 99 (1052)
Q Consensus 22 ~~vv~fSpdg~llA~~s-d~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg-~~Lav~t~dg~l~i~~l~~~ 99 (1052)
.+.|+++.||+.||+++ |+++.+|++. +. .+......-.+.+.+..++|.|-. ..+|+++.|..+++||+..+
T Consensus 23 v~Sv~wn~~g~~lasgs~dktv~v~n~e-~~----r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGSFDKTVSVWNLE-RD----RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred ceEEEEcccCceeeecccCCceEEEEec-ch----hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 35589999999999984 8899999997 32 111111111123467789998854 58999999999999999865
Q ss_pred CceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccc
Q 001567 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1052)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i 179 (1052)
+.-.... ..+. ....+.+|++++++++..|..|..+. .......
T Consensus 98 k~~~~i~---------------------~~~e-ni~i~wsp~g~~~~~~~kdD~it~id--~r~~~~~------------ 141 (313)
T KOG1407|consen 98 KCTARIE---------------------TKGE-NINITWSPDGEYIAVGNKDDRITFID--ARTYKIV------------ 141 (313)
T ss_pred cEEEEee---------------------ccCc-ceEEEEcCCCCEEEEecCcccEEEEE--eccccee------------
Confidence 5321110 0111 12336678899999999888776643 2221111
Q ss_pred eeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee---cCC
Q 001567 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGS 256 (1052)
Q Consensus 180 ~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh 256 (1052)
.-.+....+..+.| ..++.+++...+-|++.+......+.. ..|
T Consensus 142 -----------------------~~~~~~~e~ne~~w----------~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH 188 (313)
T KOG1407|consen 142 -----------------------NEEQFKFEVNEISW----------NNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAH 188 (313)
T ss_pred -----------------------ehhcccceeeeeee----------cCCCCEEEEecCCceEEEEeccccccccccccC
Confidence 00122233555554 345556666666667766554433332 678
Q ss_pred CCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 001567 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1052)
Q Consensus 257 ~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd 335 (1052)
.... |+.|+|+|+++|+|++|..|.+||++. --+.+.+.. +.-||..++||.||++||+|++|..|-|=+
T Consensus 189 ~snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isR--------ldwpVRTlSFS~dg~~lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 189 PSNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCISR--------LDWPVRTLSFSHDGRMLASASEDHFIDIAE 259 (313)
T ss_pred CcceEEEEECCCCceEeeccccceeeccChhH-hhhheeecc--------ccCceEEEEeccCcceeeccCccceEEeEe
Confidence 7666 999999999999999999999999987 778888888 778899999999999999999999999999
Q ss_pred cCCCeEEEEecccccCceeeeeEcCCC
Q 001567 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1052)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (1052)
+.+|..+..++. .++...++++|..
T Consensus 260 vetGd~~~eI~~--~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 260 VETGDRVWEIPC--EGPTFTVAWHPKR 284 (313)
T ss_pred cccCCeEEEeec--cCCceeEEecCCC
Confidence 999988777764 4667788888875
No 73
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.8e-18 Score=177.45 Aligned_cols=320 Identities=14% Similarity=0.133 Sum_probs=189.5
Q ss_pred EEEeecCCceeEEEEEecChhhhhhc-CccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEee
Q 001567 42 IELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISL 120 (1052)
Q Consensus 42 v~IW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (1052)
..-|+.+||.. .+.-....|..| +.+++++||.||+.||+++.|+.|++|++..-.. ..|.
T Consensus 63 ~~~~k~~q~~f---~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----~eHr----------- 124 (420)
T KOG2096|consen 63 NDQWKAKQPTF---VHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----KEHR----------- 124 (420)
T ss_pred hhhhcccCCCc---ccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----hhhh-----------
Confidence 55566654421 111122234434 5678999999999999999999999999963211 1110
Q ss_pred eeccccccccccceEEEEeecCCeEEEEecCC-cEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCe
Q 001567 121 VLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG-SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAF 199 (1052)
Q Consensus 121 ~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg-~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~ 199 (1052)
.+ +..+..+......|++|-..+++...+| .++.+..+-.+.+...+. .++. |+ .
T Consensus 125 ~~--R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~----------~v~~--D~----------~ 180 (420)
T KOG2096|consen 125 CI--RQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHH----------FVHI--DN----------L 180 (420)
T ss_pred Hh--hccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcc----------cccc--cc----------c
Confidence 00 0111122223447788888888888777 555554443333332111 0000 00 0
Q ss_pred eeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeecccceecCC-----CCeEEEEEcCCCCEEEEE
Q 001567 200 VSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGS-----GDAVCASIAPEQQILAVG 274 (1052)
Q Consensus 200 ~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~gh-----~~~v~va~spd~~~lAsg 274 (1052)
..-..++..+.++ -+..+++++++++.|.++-+|++. ++.+ +| ..-..+++||+|++||++
T Consensus 181 --~f~~kh~v~~i~i----------GiA~~~k~imsas~dt~i~lw~lk-Gq~L-~~idtnq~~n~~aavSP~GRFia~~ 246 (420)
T KOG2096|consen 181 --EFERKHQVDIINI----------GIAGNAKYIMSASLDTKICLWDLK-GQLL-QSIDTNQSSNYDAAVSPDGRFIAVS 246 (420)
T ss_pred --ccchhcccceEEE----------eecCCceEEEEecCCCcEEEEecC-Ccee-eeeccccccccceeeCCCCcEEEEe
Confidence 0001122333332 234678899999999999999987 4433 22 122268999999999999
Q ss_pred eeCCeEEEEecCC--CC-----ceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecc
Q 001567 275 TRRGVVELYDLAE--SA-----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1052)
Q Consensus 275 s~Dg~V~vwd~~~--~~-----~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~ 347 (1052)
+-.-.|+||.+-- .| .....+++ |...|...+|||+.+.+++.+.||+|+|||..-.- ...+
T Consensus 247 gFTpDVkVwE~~f~kdG~fqev~rvf~LkG--------H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY---~~~q 315 (420)
T KOG2096|consen 247 GFTPDVKVWEPIFTKDGTFQEVKRVFSLKG--------HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY---EAGQ 315 (420)
T ss_pred cCCCCceEEEEEeccCcchhhhhhhheecc--------chhheeeeeeCCCcceeEEEecCCcEEEeeccceE---ecCC
Confidence 9988999999632 12 12334555 99999999999999999999999999999985321 1100
Q ss_pred cccCceeeeeEcCCCCCCccceeeeeeeeEEecCCceEEEEecCCcccEEEEec-cceeeeeccCCceeeeEeeecCceE
Q 001567 348 ISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRL 426 (1052)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l 426 (1052)
|. ..+..|+ .-+-+ .|+.... +.+++ ++.+ +.+...+++++....+++
T Consensus 316 -------------Dp----k~Lk~g~-~pl~a-ag~~p~R---------L~lsP~g~~l-A~s~gs~l~~~~se~g~~-- 364 (420)
T KOG2096|consen 316 -------------DP----KILKEGS-APLHA-AGSEPVR---------LELSPSGDSL-AVSFGSDLKVFASEDGKD-- 364 (420)
T ss_pred -------------Cc----hHhhcCC-cchhh-cCCCceE---------EEeCCCCcEE-EeecCCceEEEEcccCcc--
Confidence 00 1222111 00000 1111111 33444 3322 233334555555444444
Q ss_pred EEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE
Q 001567 427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (1052)
Q Consensus 427 ~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i 476 (1052)
.|..-..|...|.+++|++||+++|++|.+-..
T Consensus 365 -----------------~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vr 397 (420)
T KOG2096|consen 365 -----------------YPELEDIHSTTISSISYSSDGKYIATCGDRYVR 397 (420)
T ss_pred -----------------chhHHHhhcCceeeEEecCCCcEEeeecceeee
Confidence 255555789999999999999999999977655
No 74
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.82 E-value=2.8e-19 Score=194.66 Aligned_cols=256 Identities=13% Similarity=0.165 Sum_probs=185.9
Q ss_pred EEEEee-CCeEEEEEc-CCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCc
Q 001567 24 IIYFKV-NNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1052)
Q Consensus 24 vv~fSp-dg~llA~~s-d~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~ 101 (1052)
.+.|.| .+.||++++ |+.|+||++...+..+..+. .+.-++.+++|+++|+.+.+++-|++|++||+++|..
T Consensus 219 ai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~------gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~ 292 (503)
T KOG0282|consen 219 AIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK------GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQV 292 (503)
T ss_pred hhhhccceeeEEEecCCCceEEEEEEecCcceehhhh------cchhhhhhhhccccCCeeeeeecceeeeeeccccceE
Confidence 366777 788999885 88999999862222222221 1234567899999999999999999999999998864
Q ss_pred eeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecC-CeEEEEecCCcEEEEeccCccccceeecccCCCCccce
Q 001567 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1052)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~ 180 (1052)
...+... . -.....+.+++ +.+++|+.|+.|.. ||.....-.
T Consensus 293 ~~~f~~~----------------~------~~~cvkf~pd~~n~fl~G~sd~ki~~--wDiRs~kvv------------- 335 (503)
T KOG0282|consen 293 LSRFHLD----------------K------VPTCVKFHPDNQNIFLVGGSDKKIRQ--WDIRSGKVV------------- 335 (503)
T ss_pred EEEEecC----------------C------CceeeecCCCCCcEEEEecCCCcEEE--EeccchHHH-------------
Confidence 3322100 0 00122345566 67889999999876 665442211
Q ss_pred eecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee----cCC
Q 001567 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGS 256 (1052)
Q Consensus 181 ~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~----~gh 256 (1052)
.....+-+.|.++.| .++|+.++++++|+++++|+...+-.. ..+
T Consensus 336 ---------------------qeYd~hLg~i~~i~F----------~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~ 384 (503)
T KOG0282|consen 336 ---------------------QEYDRHLGAILDITF----------VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPE 384 (503)
T ss_pred ---------------------HHHHhhhhheeeeEE----------ccCCceEeeeccCccEEEEEcCCCccchhhcchh
Confidence 011234456777664 799999999999999999987765332 123
Q ss_pred CCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCc--eeEEEEeecCCCCCCC--CCCeeEEEECCCCCEEEEEEcCCcE
Q 001567 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESAS--LIRTVSLYDWGYSMDD--TGPVSCIAWTPDNSAFAVGWKSRGL 331 (1052)
Q Consensus 257 ~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~--~~~~l~~~~~~~~~~h--~g~V~~l~~SpDg~~Lasg~~Dg~v 331 (1052)
.... |+..+|++.++|.-+-|..|.+|.+...-+ ....+++ | .|--..+.|||||.+|++|+.||.+
T Consensus 385 ~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG--------h~vaGys~~v~fSpDG~~l~SGdsdG~v 456 (503)
T KOG0282|consen 385 MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG--------HSVAGYSCQVDFSPDGRTLCSGDSDGKV 456 (503)
T ss_pred hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc--------eeccCceeeEEEcCCCCeEEeecCCccE
Confidence 3455 999999999999999999999999754221 1223444 4 4666789999999999999999999
Q ss_pred EEEEcCCCeEEEEecccccCceeeeeEcCCC
Q 001567 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1052)
Q Consensus 332 ~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (1052)
.+||..+.++++.++.| ...+..+.|+|..
T Consensus 457 ~~wdwkt~kl~~~lkah-~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 457 NFWDWKTTKLVSKLKAH-DQPCIGVDWHPVE 486 (503)
T ss_pred EEeechhhhhhhccccC-CcceEEEEecCCC
Confidence 99999999999999988 6777777777764
No 75
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.81 E-value=1.3e-18 Score=190.06 Aligned_cols=283 Identities=10% Similarity=0.097 Sum_probs=188.4
Q ss_pred cceEEEcCCccEEEEEeCCcEEEEEEEEecCceee-cCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEE
Q 001567 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ-IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG 148 (1052)
Q Consensus 70 ~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~ 148 (1052)
+.++++-|.|.++++|+-|-+|++||++.-..... +..- -+...+.......++.++.|++.
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l-----------------~P~E~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQL-----------------QPCETHQINSLQYSVTGDQILVV 232 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccchhhhcc-----------------CcccccccceeeecCCCCeEEEE
Confidence 56789999999999999999999999973321111 1000 01122222334556678889988
Q ss_pred ecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccc---cCCCccEEEEEecCCcceEEE
Q 001567 149 LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHK---FPISSAIIWLELCLPMRLLFV 225 (1052)
Q Consensus 149 t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~~~ 225 (1052)
+......+++-+|.....+. -+.| +. ... .+|-..+++-+|
T Consensus 233 sg~aqakl~DRdG~~~~e~~-----------------KGDQ---------YI-~Dm~nTKGHia~lt~g~w--------- 276 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFS-----------------KGDQ---------YI-RDMYNTKGHIAELTCGCW--------- 276 (641)
T ss_pred ecCcceeEEccCCceeeeee-----------------ccch---------hh-hhhhccCCceeeeecccc---------
Confidence 88888888777765533321 1111 11 111 233344455455
Q ss_pred EeeCC-cEEEEEecCCceeeeeeccccee---------cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCC-ceeE
Q 001567 226 LYSNG-QLMSCSVSKKGLKLAEFIKIDKE---------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA-SLIR 293 (1052)
Q Consensus 226 ~s~dG-~~~~~~~~d~~i~~w~~~~~~~~---------~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~-~~~~ 293 (1052)
.|+. ..+++++.|+++++|+....+.. .+..-++ .++|||||++||+||.||.|.+|+...-. ....
T Consensus 277 -hP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~ 355 (641)
T KOG0772|consen 277 -HPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM 355 (641)
T ss_pred -ccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccce
Confidence 4443 46888999999999998765432 1222334 89999999999999999999999975311 1222
Q ss_pred EEEeecCCCCCCCCC--CeeEEEECCCCCEEEEEEcCCcEEEEEcCCC-eEEEEecc-cccCceeeeeEcCCCCCCccce
Q 001567 294 TVSLYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQ-ISLSSISSPIVKPNQDCKYEPL 369 (1052)
Q Consensus 294 ~l~~~~~~~~~~h~g--~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~-~l~~tl~~-~~~~~v~s~~~sp~~~~~~~~l 369 (1052)
.++. +|.+ .|+||+||+||++|++-+.|++++|||+... +++.+..+ ...-.-+.++|||+. +.+
T Consensus 356 ~vk~-------AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~----kli 424 (641)
T KOG0772|consen 356 KVKD-------AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD----KLI 424 (641)
T ss_pred Eeee-------ccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc----eEE
Confidence 2222 3877 8999999999999999999999999999653 33433333 112345678999998 888
Q ss_pred eeee---------eeeEEecCCceEEEEecCCcccEEEEec---cceeeeeccCCceeee
Q 001567 370 MSGT---------SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYAR 417 (1052)
Q Consensus 370 ~sg~---------~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w 417 (1052)
++|. +..+++..+.+.+....-....|+...+ -..+..++.||+++++
T Consensus 425 ~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 425 LTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 8886 4667777777776665444555644444 5677788888888763
No 76
>PTZ00420 coronin; Provisional
Probab=99.81 E-value=9.1e-18 Score=198.50 Aligned_cols=216 Identities=13% Similarity=0.123 Sum_probs=162.7
Q ss_pred cCCceeeeeecccce---ecCCCCeE-EEEEcCC-CCEEEEEeeCCeEEEEecCCCCc-------eeEEEEeecCCCCCC
Q 001567 238 SKKGLKLAEFIKIDK---ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESAS-------LIRTVSLYDWGYSMD 305 (1052)
Q Consensus 238 ~d~~i~~w~~~~~~~---~~gh~~~v-~va~spd-~~~lAsgs~Dg~V~vwd~~~~~~-------~~~~l~~~~~~~~~~ 305 (1052)
.++.+++|+...... +.+|.++| +++|+|+ +.+||+|+.||+|+|||+.+.+. .+..+.+
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-------- 123 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-------- 123 (568)
T ss_pred ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec--------
Confidence 355678887544322 37899999 9999997 78999999999999999976222 2234444
Q ss_pred CCCCeeEEEECCCCCE-EEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecC
Q 001567 306 DTGPVSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (1052)
Q Consensus 306 h~g~V~~l~~SpDg~~-Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~ 381 (1052)
|.+.|.+++|+|++.. ||+|+.|++|+|||+.++....++. + ...|.+++|+|++ ..+++++ ++++|++.
T Consensus 124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~-~~~V~SlswspdG----~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-M-PKKLSSLKWNIKG----NLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-c-CCcEEEEEECCCC----CEEEEEecCCEEEEEECC
Confidence 9999999999999875 5799999999999999888777775 3 4679999999998 7787665 89999999
Q ss_pred CceEEEEecCCcccE-----EE--Eec-cceeeeeccCC----ceeeeEeeecCceEEEEecCCcchheeeeeccCcccc
Q 001567 382 GYRLYAIEEGSSERV-----LI--FSF-GKCCLNRGVSG----MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (1052)
Q Consensus 382 ~~~l~~~~~~~~~~v-----~~--~s~-~k~~~s~s~d~----~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~ 449 (1052)
+++++....+|.+.+ +. |+. ++.+++++.|+ ++++||+.....-+... ...
T Consensus 198 sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~-----------------~ld 260 (568)
T PTZ00420 198 KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM-----------------SID 260 (568)
T ss_pred CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE-----------------Eec
Confidence 999988888887643 11 223 56788877764 69999987544311100 112
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 001567 450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1052)
Q Consensus 450 ~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~ 484 (1052)
.+.+.+.....+++|.++++|+.|+.+ +|++..+.
T Consensus 261 ~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 261 NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 233444444446679999999999999 99998764
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.81 E-value=2.1e-18 Score=204.73 Aligned_cols=225 Identities=16% Similarity=0.199 Sum_probs=172.2
Q ss_pred EEeeCCcEEEEEecCCceeeeeecc------c---------ce------ecCCCCeE-EEEEcCCCCEEEEEeeCCeEEE
Q 001567 225 VLYSNGQLMSCSVSKKGLKLAEFIK------I---------DK------ELGSGDAV-CASIAPEQQILAVGTRRGVVEL 282 (1052)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~w~~~~------~---------~~------~~gh~~~v-~va~spd~~~lAsgs~Dg~V~v 282 (1052)
.+++||+++|+|++|.-+.+|+-.. . +. +.+|..-| .+.|+|++.++|+++.|++|.|
T Consensus 76 R~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVii 155 (942)
T KOG0973|consen 76 RFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVII 155 (942)
T ss_pred EECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEE
Confidence 3578888888888888888886541 0 11 26899889 9999999999999999999999
Q ss_pred EecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEeccc-----ccCceeeee
Q 001567 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-----SLSSISSPI 357 (1052)
Q Consensus 283 wd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~-----~~~~v~s~~ 357 (1052)
|+..+ .+.+.++.+ |.+.|..+.|.|-|++|||-++|++|+||.+..-.+.+++.++ +..-+.-+.
T Consensus 156 wn~~t-F~~~~vl~~--------H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlS 226 (942)
T KOG0973|consen 156 WNAKT-FELLKVLRG--------HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLS 226 (942)
T ss_pred Ecccc-ceeeeeeec--------ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecc
Confidence 99998 688889998 9999999999999999999999999999998775566665543 123456678
Q ss_pred EcCCCCCCccceeeee-------eeeEEecCCceEEEEecCCcccE--EEEec------cc------------eeeeecc
Q 001567 358 VKPNQDCKYEPLMSGT-------SMMQWDEYGYRLYAIEEGSSERV--LIFSF------GK------------CCLNRGV 410 (1052)
Q Consensus 358 ~sp~~~~~~~~l~sg~-------~~~~W~~~~~~l~~~~~~~~~~v--~~~s~------~k------------~~~s~s~ 410 (1052)
+||+| ++++++- ++.+-.-++.+.-..+-||...+ +.|.+ .+ .+++||.
T Consensus 227 WSPDG----~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq 302 (942)
T KOG0973|consen 227 WSPDG----HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ 302 (942)
T ss_pred cCCCc----CeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence 99999 7777553 45555555555555566787776 55554 22 5678889
Q ss_pred CCceeeeEeeecCceEEEEecCCcchheeeeeccCc--ccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 001567 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV--SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1052)
Q Consensus 411 d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~--~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~ 483 (1052)
|+++.+|...... |. ...-.+..|..++|||||..|.++|.||++ +....-+
T Consensus 303 DrSlSVW~T~~~R---------------------Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 303 DRSLSVWNTALPR---------------------PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CccEEEEecCCCC---------------------chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 9999999853221 21 111235679999999999999999999999 8877543
No 78
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=6.4e-17 Score=182.80 Aligned_cols=458 Identities=15% Similarity=0.207 Sum_probs=267.9
Q ss_pred CeEEEEEcCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCcc---EEEEEeCCcEEEEEEEEecCceeecCC
Q 001567 31 NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK---LIAVVTSSLYLHIFKVQITEKSIQIGG 107 (1052)
Q Consensus 31 g~llA~~sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~---~Lav~t~dg~l~i~~l~~~~~~~~~~~ 107 (1052)
+.++|.+....|.+||-.+. ....... .+.+++.++.|-|+++ .+++|..||.|++|.+....-. .
T Consensus 25 ~~~vafGa~~~Iav~dp~k~-~i~t~l~------GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~-~--- 93 (764)
T KOG1063|consen 25 GGLVAFGAGPAIAVADPEKI-LIVTTLD------GHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLI-K--- 93 (764)
T ss_pred cceEEecCCceEEEeCcccc-eeEEecc------CCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheE-E---
Confidence 34777778889999998633 2222221 1457789999999998 7999999999999999822210 0
Q ss_pred CCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCC
Q 001567 108 KQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS 187 (1052)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~ 187 (1052)
+ ..++++...+.|+......+.+...++.+.. |+.+...-.- ...+-|
T Consensus 94 -------i----------~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~v--w~~~~~e~~~----------~~~~rf--- 141 (764)
T KOG1063|consen 94 -------I----------YTIQGHCKECVCVVARSSVMTCKAADGTVSV--WDKQQDEVFL----------LAVLRF--- 141 (764)
T ss_pred -------E----------EeecCcceeEEEEEeeeeEEEeeccCceEEE--eecCCCceee----------ehheeh---
Confidence 0 0112222234444433333333357888876 4432111000 000000
Q ss_pred CcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEee-CCcE-EEEEecCCceeeeeeccc--c---eecCCCCeE
Q 001567 188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQL-MSCSVSKKGLKLAEFIKI--D---KELGSGDAV 260 (1052)
Q Consensus 188 ~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~-dG~~-~~~~~~d~~i~~w~~~~~--~---~~~gh~~~v 260 (1052)
..+ .+.- .++++.+ .|.+ +++++.+..+.+...... . .+.||.+.|
T Consensus 142 ------------------~~k-~~ip--------LcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWI 194 (764)
T KOG1063|consen 142 ------------------EIK-EAIP--------LCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWI 194 (764)
T ss_pred ------------------hhh-hHhh--------HHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhh
Confidence 000 0000 1112222 2322 233333433444322211 1 137999999
Q ss_pred -EEEEcCCCC---EEEEEeeCCeEEEEecCCCC---ce-------------e-EEEEeecCC-----CCCCCCCCeeEEE
Q 001567 261 -CASIAPEQQ---ILAVGTRRGVVELYDLAESA---SL-------------I-RTVSLYDWG-----YSMDDTGPVSCIA 314 (1052)
Q Consensus 261 -~va~spd~~---~lAsgs~Dg~V~vwd~~~~~---~~-------------~-~~l~~~~~~-----~~~~h~g~V~~l~ 314 (1052)
+++|+..+. +||+||+|..||||.+...+ +. . ..+....+. ...+|...|.++.
T Consensus 195 rsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~ 274 (764)
T KOG1063|consen 195 RSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW 274 (764)
T ss_pred hhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE
Confidence 999998665 89999999999999985321 00 0 011011111 1248999999999
Q ss_pred ECCCCCEEEEEEcCCcEEEEEcCCC--eEEEEec--c--cccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceE
Q 001567 315 WTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIR--Q--ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL 385 (1052)
Q Consensus 315 ~SpDg~~Lasg~~Dg~v~vWd~~~~--~l~~tl~--~--~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l 385 (1052)
|+|++..|.+++.|+++.+|..... --....+ + +......+..|+|++ ..+++-+ ....|.......
T Consensus 275 W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~----~~ii~~g~~Gg~hlWkt~d~~~ 350 (764)
T KOG1063|consen 275 WHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS----NVIIAHGRTGGFHLWKTKDKTF 350 (764)
T ss_pred EccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC----CEEEEecccCcEEEEeccCccc
Confidence 9999999999999999999987543 3333332 2 213457788899987 5544333 566776333322
Q ss_pred E---EEecCCcccE--EEEec-cceeeeeccCCceeeeEee--------------e----------cCceEEEEecCC--
Q 001567 386 Y---AIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVI--------------Y----------GEDRLLVVQSED-- 433 (1052)
Q Consensus 386 ~---~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~~~--------------~----------~~~~l~~~~~~~-- 433 (1052)
+ ....||...| +.+++ |+.++|.|.|.|.+++.-- + .++-.+++.+++
T Consensus 351 w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 351 WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKV 430 (764)
T ss_pred eeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeeccccee
Confidence 2 3346888888 45555 8899999999988775322 0 001112222111
Q ss_pred -----cc----------------------h--------------h-----------ee----------------------
Q 001567 434 -----TD----------------------E--------------L-----------KI---------------------- 439 (1052)
Q Consensus 434 -----~~----------------------~--------------~-----------~w---------------------- 439 (1052)
.+ + . .|
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 00 0 0 01
Q ss_pred eeeccC--cccccCCCcEEEEEEccCCCEEEEEeCCc-----eE-EEEccCCcEEEecCccceeeeEEEEEEEe--CCEE
Q 001567 440 LHLNLP--VSYISQNWPVQHVAASKDGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKII 509 (1052)
Q Consensus 440 ~~~~~p--~~~~~h~~~V~~va~SpdG~~lavag~dG-----~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~--~~~l 509 (1052)
++..-| .++.||...|.+++.||+|+++|++++.. .| +|++ ..|+.-+ ..+..++.|+.+.|. +.+|
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t--~~W~~~~-~L~~HsLTVT~l~FSpdg~~L 587 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNT--ANWLQVQ-ELEGHSLTVTRLAFSPDGRYL 587 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEec--cchhhhh-eecccceEEEEEEECCCCcEE
Confidence 000012 35669999999999999999999998753 34 7765 4566544 345566889988886 5588
Q ss_pred EEEEEecCCCeEEEEEeeCCC--CCCcceeEEeecCCccEE---EEeeCCEEEEEEcCCeEEEEEEE
Q 001567 510 VVCNYIDSSNTYELLFYPRYH--LDQSSLLCRKSLLAKPIV---MDVYEDYILVTYRPFDVHIFHVK 571 (1052)
Q Consensus 510 i~~~~~~~~~~~elrly~~~~--ld~~~~l~~~~~~~~~~~---~s~~~~~llv~~~d~~i~l~~~~ 571 (1052)
+++ +++....+|...+ .+...+.....+ +.++- -++++-++++++.|..+++|...
T Consensus 588 Lsv-----sRDRt~sl~~~~~~~~~e~~fa~~k~H-tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 588 LSV-----SRDRTVSLYEVQEDIKDEFRFACLKAH-TRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred EEe-----ecCceEEeeeeecccchhhhhcccccc-ceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 887 4457788888841 222122222221 22331 35677788889999999999875
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.4e-18 Score=197.41 Aligned_cols=229 Identities=15% Similarity=0.185 Sum_probs=186.8
Q ss_pred CcceEEEEeeCCcEEEEEecCCceeeeeeccccee---cC-CCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeE
Q 001567 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LG-SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (1052)
Q Consensus 219 ~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~g-h~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~ 293 (1052)
.....+..+++|+.++++..++.+.+||....+.. .+ |...| |++|+ ...+.+|+.||.|..+|+........
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~ 295 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS 295 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh
Confidence 34466777999999999999999999998766543 45 88899 99999 77899999999999999987333344
Q ss_pred EEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee
Q 001567 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1052)
Q Consensus 294 ~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (1052)
++.+ |...|..++|++||.+||+|+.|+.+.|||........++.+| .+.|.+++|+|-. ...|++|.
T Consensus 296 ~~~~--------H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H-~aAVKA~awcP~q---~~lLAsGG 363 (484)
T KOG0305|consen 296 TLQG--------HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH-TAAVKALAWCPWQ---SGLLATGG 363 (484)
T ss_pred hhhc--------ccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecc-ceeeeEeeeCCCc---cCceEEcC
Confidence 4666 9999999999999999999999999999999888888899988 8999999999985 36788886
Q ss_pred -----eeeEEecCCceEEEEecCCcccEEEEec---cceeeee-c-cCCceeeeEeeecCceEEEEecCCcchheeeeec
Q 001567 374 -----SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNR-G-VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (1052)
Q Consensus 374 -----~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~-s-~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~ 443 (1052)
++++|+..++..+..... ..+|..+.+ .+.++++ + .+..+.+|.+.+-.
T Consensus 364 Gs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~-------------------- 422 (484)
T KOG0305|consen 364 GSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK-------------------- 422 (484)
T ss_pred CCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc--------------------
Confidence 899999999988776543 456644444 4445443 3 34467778765522
Q ss_pred cCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccC
Q 001567 444 LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1052)
Q Consensus 444 ~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s 482 (1052)
....+.+|+..|.++++||||..+++|+.|.++ +|++-.
T Consensus 423 ~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 423 LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 256778999999999999999999999999999 998744
No 80
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4.1e-18 Score=198.11 Aligned_cols=212 Identities=20% Similarity=0.285 Sum_probs=160.2
Q ss_pred hcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeE
Q 001567 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1052)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~l 145 (1052)
+.+..+.|+|.|||..|.++++||.|++|+...... .++ .+......|.+++.....+
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-------~P~---------------ti~~~g~~v~~ia~~s~~f 69 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-------EPE---------------TIDISGELVSSIACYSNHF 69 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-------CCc---------------hhhccCceeEEEeecccce
Confidence 456678999999999999999999999999764321 010 1121344688999999999
Q ss_pred EEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEE
Q 001567 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (1052)
Q Consensus 146 lv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (1052)
++++.+++|.++..+....... + ..-..++++ ++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~i-------------------------------L-----~Rftlp~r~----------~~ 103 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDTI-------------------------------L-----ARFTLPIRD----------LA 103 (933)
T ss_pred EEeeccceEEEeeCCCCCccce-------------------------------e-----eeeeccceE----------EE
Confidence 9999999999987764332211 0 001112333 45
Q ss_pred EeeCCcEEEEEecCCceeeeeecccc---eecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCC
Q 001567 226 LYSNGQLMSCSVSKKGLKLAEFIKID---KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (1052)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~~~~---~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~ 301 (1052)
++-+|+.++.|++|..+++.+..... ...+|..+| ++.++|++.+||+.+-||+|++|++++ +.+..++.+....
T Consensus 104 v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k~ 182 (933)
T KOG1274|consen 104 VSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GILSKTLTGVDKD 182 (933)
T ss_pred EecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc-chhhhhcccCCcc
Confidence 68899999999999999988765442 238999999 999999999999999999999999998 8777777765443
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEec
Q 001567 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1052)
Q Consensus 302 ~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~ 346 (1052)
.....+..+..++|+|+|..+|+...|+.|++++..+......|+
T Consensus 183 n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr 227 (933)
T KOG1274|consen 183 NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR 227 (933)
T ss_pred ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec
Confidence 333346678889999998888888889999999988766544443
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.81 E-value=2.1e-18 Score=204.87 Aligned_cols=260 Identities=15% Similarity=0.221 Sum_probs=188.3
Q ss_pred EEEEeeCCcEEEEEe--cCCceeeeeecccc------------e---ecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEe
Q 001567 223 LFVLYSNGQLMSCSV--SKKGLKLAEFIKID------------K---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYD 284 (1052)
Q Consensus 223 ~~~~s~dG~~~~~~~--~d~~i~~w~~~~~~------------~---~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd 284 (1052)
.+.++|||..+++++ .|+++.+|+...-- . ...|.++| |+.|+|||++||+|++|+.|.||+
T Consensus 18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~ 97 (942)
T KOG0973|consen 18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWE 97 (942)
T ss_pred EEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEee
Confidence 355799999999999 78888899654210 0 15789999 999999999999999999999999
Q ss_pred cCC------CC-----------ceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecc
Q 001567 285 LAE------SA-----------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1052)
Q Consensus 285 ~~~------~~-----------~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~ 347 (1052)
... .+ +...++.+ |.+.|..++|+||+.+||+++-|++|.||+..+..++..+++
T Consensus 98 ~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~--------H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 98 RAEIGSGTVFGSTGGAKNVESWKVVSILRG--------HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ecccCCcccccccccccccceeeEEEEEec--------CCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence 872 00 12334444 999999999999999999999999999999999899999999
Q ss_pred cccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcc------cEEEEe--c-cceeeeecc-CCce
Q 001567 348 ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE------RVLIFS--F-GKCCLNRGV-SGMT 414 (1052)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~------~v~~~s--~-~k~~~s~s~-d~~v 414 (1052)
| .+-|..+.|.|.| ++++|-+ ++++|....-.+.....++-+ .+..++ | |+.+++.+. .+..
T Consensus 170 H-~s~VKGvs~DP~G----ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~ 244 (942)
T KOG0973|consen 170 H-QSLVKGVSWDPIG----KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK 244 (942)
T ss_pred c-cccccceEECCcc----CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence 9 7889999999999 9999877 999999777666666554432 234443 4 777766542 1111
Q ss_pred eeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccC-----CC------------EEEEEeCCceE-
Q 001567 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-----GM------------FLAVAGLHGLI- 476 (1052)
Q Consensus 415 ~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~Spd-----G~------------~lavag~dG~i- 476 (1052)
..-.+...+ .|. .-..+.||..|+.+++|+|- -+ .+|+||+|+.+
T Consensus 245 ~~~~IieR~--------------tWk---~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlS 307 (942)
T KOG0973|consen 245 STIAIIERG--------------TWK---VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLS 307 (942)
T ss_pred ceeEEEecC--------------Cce---eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEE
Confidence 111111111 122 23467899999999999972 11 68999999999
Q ss_pred EEEccCCcEEEecCccceeeeEEEEEEEe--CCEEEEEEE
Q 001567 477 LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNY 514 (1052)
Q Consensus 477 lwd~~s~~w~~f~~~~~e~~~~v~gl~W~--~~~li~~~~ 514 (1052)
+|+....| .+| ...+--+-.+..|.|. |-.|.+|.+
T Consensus 308 VW~T~~~R-Pl~-vi~~lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 308 VWNTALPR-PLF-VIHNLFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred EEecCCCC-chh-hhhhhhcCceeeeeEcCCCCeEEEEec
Confidence 99986544 122 2111111237799998 446666633
No 82
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.5e-16 Score=179.82 Aligned_cols=421 Identities=14% Similarity=0.151 Sum_probs=244.9
Q ss_pred CccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEee-cCCeEE
Q 001567 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHML 146 (1052)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-d~~~ll 146 (1052)
.+++++++|.+++.||++-++|+|.||++..+-- .+..+. .+.+.+|.+++. .+.+|+
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~----------------~~~vi~-----g~~drsIE~L~W~e~~RLF 84 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF----------------LEPVIH-----GPEDRSIESLAWAEGGRLF 84 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCce----------------eeEEEe-----cCCCCceeeEEEccCCeEE
Confidence 3578999999999999999999999999974321 110111 122334444443 477888
Q ss_pred EEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEE
Q 001567 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1052)
Q Consensus 147 v~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (1052)
...-+|.|.- ||....... ......++.|.+|+.
T Consensus 85 S~g~sg~i~E--wDl~~lk~~----------------------------------~~~d~~gg~IWsiai---------- 118 (691)
T KOG2048|consen 85 SSGLSGSITE--WDLHTLKQK----------------------------------YNIDSNGGAIWSIAI---------- 118 (691)
T ss_pred eecCCceEEE--EecccCcee----------------------------------EEecCCCcceeEEEe----------
Confidence 8888998865 664432221 112234566777765
Q ss_pred eeCCcEEEEEecCCceeeeeecccc----eec-CCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecC
Q 001567 227 YSNGQLMSCSVSKKGLKLAEFIKID----KEL-GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (1052)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~~~----~~~-gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~ 300 (1052)
+|.+..++.+++||.+...+....+ ... -..+.+ |++|+|++..||+||.||.|++||+.. +..++.....--
T Consensus 119 ~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~-~~t~~~~~~~~d 197 (691)
T KOG2048|consen 119 NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS-GQTLHIITMQLD 197 (691)
T ss_pred CCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC-CceEEEeeeccc
Confidence 4445555555555533333332221 111 224677 999999999999999999999999987 554442221100
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeE
Q 001567 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQ 377 (1052)
Q Consensus 301 ~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~ 377 (1052)
+......--|++|.|-.|| .||+|..-|+|++||...+.+..+...| .+.|.+++..+++ ..+.+++ ++..
T Consensus 198 ~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h-~adVl~Lav~~~~----d~vfsaGvd~~ii~ 271 (691)
T KOG2048|consen 198 RLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCH-DADVLALAVADNE----DRVFSAGVDPKIIQ 271 (691)
T ss_pred ccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhh-hcceeEEEEcCCC----CeEEEccCCCceEE
Confidence 1111123346777777665 6889999999999999999999988888 7889999998886 5555444 5555
Q ss_pred EecCCc-eEEEEe---cCCcccEEEEec-cceeeeeccCCceeeeEeeec---------------------CceEEEEec
Q 001567 378 WDEYGY-RLYAIE---EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYG---------------------EDRLLVVQS 431 (1052)
Q Consensus 378 W~~~~~-~l~~~~---~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~~~~~---------------------~~~l~~~~~ 431 (1052)
+...+. .-|... ..|...+.++.. ...+.+|+.|.++.+-..... ++++++...
T Consensus 272 ~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~ 351 (691)
T KOG2048|consen 272 YSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWK 351 (691)
T ss_pred EEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEec
Confidence 554443 223332 345555644444 557788888887755443321 111111110
Q ss_pred CCcchheeeeecc-----------CcccccCCCcEEEEEEccCCCEEEEEeCCceEEEEccCCc-EEE--ecCccceeee
Q 001567 432 EDTDELKILHLNL-----------PVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKK-WRV--FGDITQEQKI 497 (1052)
Q Consensus 432 ~~~~~~~w~~~~~-----------p~~~~~h~~~V~~va~SpdG~~lavag~dG~ilwd~~s~~-w~~--f~~~~~e~~~ 497 (1052)
.. ....|..... ..-.......|.+.|+||||+++|.+.-..+-+|.++... -+. ..+...+. .
T Consensus 352 ~h-~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~-~ 429 (691)
T KOG2048|consen 352 AH-GVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLAL-L 429 (691)
T ss_pred cc-cccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhh-c
Confidence 00 0011211110 1111223345999999999999999987777788876532 111 11111110 1
Q ss_pred EEEEE--EEeCCEEEEEEEecCCCeEEEEEeeCCCCCCcceeEEeecCC-------ccEEEEeeCCEEEEEEcCCeEEEE
Q 001567 498 QSKGL--LWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLA-------KPIVMDVYEDYILVTYRPFDVHIF 568 (1052)
Q Consensus 498 ~v~gl--~W~~~~li~~~~~~~~~~~elrly~~~~ld~~~~l~~~~~~~-------~~~~~s~~~~~llv~~~d~~i~l~ 568 (1052)
....+ .-.++.++.+. -+..++..+..+ .....+.+.+.+ .-+..+++|+++++.++.+.|.+|
T Consensus 430 ~a~~i~ftid~~k~~~~s----~~~~~le~~el~---~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~ 502 (691)
T KOG2048|consen 430 DASAISFTIDKNKLFLVS----KNIFSLEEFELE---TPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVY 502 (691)
T ss_pred cceeeEEEecCceEEEEe----cccceeEEEEec---CcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEE
Confidence 12222 22366666553 122333333221 001111111111 124568899999999999999999
Q ss_pred EEE
Q 001567 569 HVK 571 (1052)
Q Consensus 569 ~~~ 571 (1052)
.++
T Consensus 503 nl~ 505 (691)
T KOG2048|consen 503 NLE 505 (691)
T ss_pred Ecc
Confidence 886
No 83
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=8.3e-19 Score=203.54 Aligned_cols=248 Identities=16% Similarity=0.162 Sum_probs=168.8
Q ss_pred CCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCC--------------------C-------ce--e--EEEE---ee-
Q 001567 255 GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES--------------------A-------SL--I--RTVS---LY- 298 (1052)
Q Consensus 255 gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~--------------------~-------~~--~--~~l~---~~- 298 (1052)
.|.++| |+.||+||++||+|++||.|+||.+... + .. + +... ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 799999 9999999999999999999999998640 0 00 0 0000 00
Q ss_pred ----cCC-----C-------CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCC
Q 001567 299 ----DWG-----Y-------SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1052)
Q Consensus 299 ----~~~-----~-------~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (1052)
..+ + -.||++.|.+++||.+ ++|.+++.|+||++|++....+++++.. .+-|++++|+|.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~H--ndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSH--NDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEec--CCeeEEEEecccC
Confidence 000 0 1389999999999976 5889999999999999999999999863 6889999999986
Q ss_pred CCCccceeeeeeeeEEecCCceEEEEecCCcccEEEEeccceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeee
Q 001567 363 DCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (1052)
Q Consensus 363 ~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~ 442 (1052)
+ ++++| ||.|+.+++|.+....- ..|..
T Consensus 422 D---ryFiS------------------------------------GSLD~KvRiWsI~d~~V------------v~W~D- 449 (712)
T KOG0283|consen 422 D---RYFIS------------------------------------GSLDGKVRLWSISDKKV------------VDWND- 449 (712)
T ss_pred C---CcEee------------------------------------cccccceEEeecCcCee------------Eeehh-
Confidence 2 45554 45555555555432111 00110
Q ss_pred ccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCcc-----ceeeeEEEEEEEe---CCEEEEEE
Q 001567 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDIT-----QEQKIQSKGLLWL---GKIIVVCN 513 (1052)
Q Consensus 443 ~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~-----~e~~~~v~gl~W~---~~~li~~~ 513 (1052)
-..-|++++|+|||++.++|+.+|.. +|++...+...-..+. ..+.-.|+|+... .+.++|.
T Consensus 450 --------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT- 520 (712)
T KOG0283|consen 450 --------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT- 520 (712)
T ss_pred --------hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe-
Confidence 11458999999999999999999999 9999876654311111 1111248898886 3335554
Q ss_pred EecCCCeEEEEEeeCC--CCCCcceeEEeecCCcc-EEEEeeCCEEEEEEcCCeEEEEEEE
Q 001567 514 YIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKP-IVMDVYEDYILVTYRPFDVHIFHVK 571 (1052)
Q Consensus 514 ~~~~~~~~elrly~~~--~ld~~~~l~~~~~~~~~-~~~s~~~~~llv~~~d~~i~l~~~~ 571 (1052)
+++..||+|+.. .+-...-. -....++. -.++.+|.+++.++.|..|++|++.
T Consensus 521 ----SnDSrIRI~d~~~~~lv~KfKG-~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 521 ----SNDSRIRIYDGRDKDLVHKFKG-FRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ----cCCCceEEEeccchhhhhhhcc-cccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 677889999882 22111000 01122322 2366688999999999999999985
No 84
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.81 E-value=2.6e-19 Score=191.23 Aligned_cols=263 Identities=15% Similarity=0.180 Sum_probs=201.0
Q ss_pred EEEeeCCcEEEEEecCCceeeeeecccce-----ecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEe
Q 001567 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~-----~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~ 297 (1052)
+.+.++...+++++.|..|++|+....+. +.|..+++ .+.|.++++.+.+++.|+.+++|+++. .+..+++.+
T Consensus 181 v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~-~r~~~TLsG 259 (459)
T KOG0288|consen 181 VEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS-LRLRHTLSG 259 (459)
T ss_pred eEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc-hhhhhhhcc
Confidence 33467778899999999999998765442 25666778 999999999999999999999999998 888899998
Q ss_pred ecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---e
Q 001567 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (1052)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~ 374 (1052)
|++.|+++.|.-....+++|+.|.++++||+..+.+..+.-.. +.++.+..++ ..++||- +
T Consensus 260 --------HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~~------~~~~SgH~Dkk 323 (459)
T KOG0288|consen 260 --------HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCSI------SDVISGHFDKK 323 (459)
T ss_pred --------cccceeeehhhccccceeeccccchhhhhhhhhhheecccccc--ccccceEecc------eeeeecccccc
Confidence 9999999999998888999999999999999988776665432 3344444431 4556664 8
Q ss_pred eeEEecCCceEEEEecCCcccE--EEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccC
Q 001567 375 MMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (1052)
Q Consensus 375 ~~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h 451 (1052)
+++|+..+..+......+. .| +.+++ +..+.+.+.|.++++.|+.+.+-+.... -+....+|
T Consensus 324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s--------------A~g~k~as 388 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS--------------AEGFKCAS 388 (459)
T ss_pred eEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee--------------cccccccc
Confidence 9999999988877776644 77 55555 7788888999999999987655432111 12233455
Q ss_pred CCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEe--CCEEEEEEEecCCCeEEEEEe
Q 001567 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFY 526 (1052)
Q Consensus 452 ~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~--~~~li~~~~~~~~~~~elrly 526 (1052)
+ .+.+.|||||.|+|+||.||.+ +|++.+++............ .+..+.|. |.+++++ +++..+.+|
T Consensus 389 D--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~-aI~s~~W~~sG~~Llsa-----dk~~~v~lW 458 (459)
T KOG0288|consen 389 D--WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA-AITSLSWNPSGSGLLSA-----DKQKAVTLW 458 (459)
T ss_pred c--cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCc-ceEEEEEcCCCchhhcc-----cCCcceEec
Confidence 5 5679999999999999999999 99999999765443333331 46677885 7788877 455556665
No 85
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.81 E-value=1.3e-16 Score=183.65 Aligned_cols=433 Identities=10% Similarity=0.083 Sum_probs=251.8
Q ss_pred EeeC---CeEEEEEcCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCcee
Q 001567 27 FKVN---NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (1052)
Q Consensus 27 fSpd---g~llA~~sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~ 103 (1052)
+.|+ ++.+...+.+.++||+++ .+..+-.+.+-. ..++++.=+|-=..+|+|+.+|.|.|+++..++...
T Consensus 166 ~HP~TYLNKIvvGs~~G~lql~Nvr-t~K~v~~f~~~~------s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~ 238 (910)
T KOG1539|consen 166 LHPSTYLNKIVVGSSQGRLQLWNVR-TGKVVYTFQEFF------SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM 238 (910)
T ss_pred ecchhheeeEEEeecCCcEEEEEec-cCcEEEEecccc------cceeEeccCCcceEEEEeccCceEEEEEcccCcEEE
Confidence 3465 445555678999999996 665566555432 456788888877899999999999999998765321
Q ss_pred ecCCCCCCCceeeeEeeeeccccccccccceEEEEee--cCCe-EEEEecCCcEEEEeccCccccceeecccCCCCccce
Q 001567 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS--DNKH-MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1052)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--d~~~-llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~ 180 (1052)
. ++.+++.|++++. ||.. |++++++|.+..|+.+.........+ .|...+.
T Consensus 239 s-----------------------Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n---ah~~sv~ 292 (910)
T KOG1539|consen 239 S-----------------------FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN---AHYGSVT 292 (910)
T ss_pred E-----------------------EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec---cccCCcc
Confidence 1 2333556666554 5654 55567789988866554432222111 1111122
Q ss_pred eecccCCCcce-eecCCCCeeeccccCCCc----cEEEE-EecCCcceEEEEeeCCcEEEEEecCCceeeeeeccc----
Q 001567 181 LSHHFPSNGLA-SVDTSGAFVSDHKFPISS----AIIWL-ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI---- 250 (1052)
Q Consensus 181 ~i~~s~~~~l~-s~~~~~~~~~~~~~~~~~----~i~~i-~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~---- 250 (1052)
..-|-.+.-+. +.+.+ +.-+.+..+.+. ..+.- -++.+..+....-..|..+.+++.|.+.+......-
T Consensus 293 ~~~fl~~epVl~ta~~D-nSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~ 371 (910)
T KOG1539|consen 293 GATFLPGEPVLVTAGAD-NSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ 371 (910)
T ss_pred cceecCCCceEeeccCC-CceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhH
Confidence 21221111111 11111 111111111000 00000 111122222222356666666666665554432210
Q ss_pred ---c--------ee-cC-C----CCeE-EEEEcCC-----CCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCC
Q 001567 251 ---D--------KE-LG-S----GDAV-CASIAPE-----QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT 307 (1052)
Q Consensus 251 ---~--------~~-~g-h----~~~v-~va~spd-----~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~ 307 (1052)
+ +. .. + -.++ ..++... .+.++..-.+...+.|+.+....--+++....+. ...
T Consensus 372 ~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~---~~~ 448 (910)
T KOG1539|consen 372 ELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFK---KDD 448 (910)
T ss_pred hhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcccc---ccC
Confidence 0 00 00 0 0112 3333221 1223333334456666665421112222221000 034
Q ss_pred CCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEec--ccccCceeeeeEcCCCCCCccceeeee---eeeEEecCC
Q 001567 308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR--QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (1052)
Q Consensus 308 g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~--~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~ 382 (1052)
..+++++.|+.|++.+.|+..|+|-++++.+|....++. ..|..+|++++....+ +.++|++ -+++|+..+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n----~~~vsa~~~Gilkfw~f~~ 524 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN----RLLVSAGADGILKFWDFKK 524 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC----ceEEEccCcceEEEEecCC
Confidence 779999999999999999999999999999998888873 2237889999886655 6666665 789999988
Q ss_pred ceEEEEecC-CcccEEEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEE
Q 001567 383 YRLYAIEEG-SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA 460 (1052)
Q Consensus 383 ~~l~~~~~~-~~~~v~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~ 460 (1052)
..+.....- +......... ...++.++.|-.+.+.|+.+.. +...+.||.+.|+..+|
T Consensus 525 k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k--------------------vvR~f~gh~nritd~~F 584 (910)
T KOG1539|consen 525 KVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK--------------------VVREFWGHGNRITDMTF 584 (910)
T ss_pred cceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh--------------------hhHHhhccccceeeeEe
Confidence 876665532 2222222222 5566677777778777754432 36788899999999999
Q ss_pred ccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCCCCCCcceeEE
Q 001567 461 SKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCR 539 (1052)
Q Consensus 461 SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~elrly~~~~ld~~~~l~~ 539 (1052)
||||++|++|+.|+++ +||+.++.. |... +
T Consensus 585 S~DgrWlisasmD~tIr~wDlpt~~l-------------------------------------ID~~----------~-- 615 (910)
T KOG1539|consen 585 SPDGRWLISASMDSTIRTWDLPTGTL-------------------------------------IDGL----------L-- 615 (910)
T ss_pred CCCCcEEEEeecCCcEEEEeccCcce-------------------------------------eeeE----------e--
Confidence 9999999999999999 999988631 0000 0
Q ss_pred eecCCccEEEEeeCCEEEEEEcC-CeEEEEE
Q 001567 540 KSLLAKPIVMDVYEDYILVTYRP-FDVHIFH 569 (1052)
Q Consensus 540 ~~~~~~~~~~s~~~~~llv~~~d-~~i~l~~ 569 (1052)
.+-|...+.++|.+|+|+++..| ..|++|.
T Consensus 616 vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 616 VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 11234456788999999998776 6777873
No 86
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=4.6e-18 Score=185.68 Aligned_cols=275 Identities=16% Similarity=0.238 Sum_probs=192.5
Q ss_pred hhhcCccceEEEcCCccE-EEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecC
Q 001567 64 VQREGENLQAVWSPDTKL-IAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN 142 (1052)
Q Consensus 64 l~~~G~~~~v~wSPDg~~-Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 142 (1052)
.+++..+.+++|||...+ +||++ .-.+.||+..+-.....+. . ++ +...-.+|..||
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~s----------------r----Fk-~~v~s~~fR~DG 80 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFS----------------R----FK-DVVYSVDFRSDG 80 (487)
T ss_pred ccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHH----------------h----hc-cceeEEEeecCC
Confidence 345778889999996654 45544 4469999976433211110 0 11 112334778889
Q ss_pred CeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcce
Q 001567 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (1052)
Q Consensus 143 ~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (1052)
..+++|...|.|++++.... ... ..+..+..++..+.|++
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r--~iL----------------------------------R~~~ah~apv~~~~f~~---- 120 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSR--VIL----------------------------------RQLYAHQAPVHVTKFSP---- 120 (487)
T ss_pred eEEEccCCcCcEEEeccccH--HHH----------------------------------HHHhhccCceeEEEecc----
Confidence 98888999999999763221 111 11345666777666643
Q ss_pred EEEEeeCCcEEEEEecCCceeeeeecccce---ecCCCCeE-EEEEcCCC-CEEEEEeeCCeEEEEecCCCCceeEEEEe
Q 001567 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSL 297 (1052)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~---~~gh~~~v-~va~spd~-~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~ 297 (1052)
-|+..++++++|+.++.||..+... +.+|++.| |.+++|.. ..+++|+.||+||+||+...+..+..+.
T Consensus 121 -----~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln- 194 (487)
T KOG0310|consen 121 -----QDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN- 194 (487)
T ss_pred -----cCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-
Confidence 3556777888888899999876643 37999999 99999964 5899999999999999987444444443
Q ss_pred ecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcC-CCeEEEEecccccCceeeeeEcCCCCCCccceeeeeeee
Q 001567 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMM 376 (1052)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~-~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~ 376 (1052)
|..+|.++.+-|.|..+|+++. ..++|||+. |+++++....| ...|+|+++..++
T Consensus 195 --------hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H-~KtVTcL~l~s~~-------------- 250 (487)
T KOG0310|consen 195 --------HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNH-NKTVTCLRLASDS-------------- 250 (487)
T ss_pred --------CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcc-cceEEEEEeecCC--------------
Confidence 8899999999999999999998 699999998 66666666656 5677777765543
Q ss_pred EEecCCceEEEEecCCcccEEEEeccceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEE
Q 001567 377 QWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (1052)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~ 456 (1052)
..++|++.|+.++++++. +-++ ... ..-.+||.
T Consensus 251 --------------------------~rLlS~sLD~~VKVfd~t--~~Kv------------------v~s-~~~~~pvL 283 (487)
T KOG0310|consen 251 --------------------------TRLLSGSLDRHVKVFDTT--NYKV------------------VHS-WKYPGPVL 283 (487)
T ss_pred --------------------------ceEeecccccceEEEEcc--ceEE------------------EEe-eeccccee
Confidence 234566777777776621 1110 000 01236899
Q ss_pred EEEEccCCCEEEEEeCCceEE
Q 001567 457 HVAASKDGMFLAVAGLHGLIL 477 (1052)
Q Consensus 457 ~va~SpdG~~lavag~dG~il 477 (1052)
++++|||++.+++|..+|.+.
T Consensus 284 siavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 284 SIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred eEEecCCCceEEEecccceee
Confidence 999999999999999999983
No 87
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.80 E-value=4.9e-18 Score=200.15 Aligned_cols=268 Identities=18% Similarity=0.214 Sum_probs=211.5
Q ss_pred cCCCCe-E-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEE-EEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCc
Q 001567 254 LGSGDA-V-CASIAPEQQILAVGTRRGVVELYDLAESASLIRT-VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (1052)
Q Consensus 254 ~gh~~~-v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~-l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~ 330 (1052)
.+|.+. + |..|. ...+++|+.|+++++|+..+ +..+.+ +.+ |.|.|+++++..-+..|++|+.|++
T Consensus 204 ~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~-~~~i~~~l~G--------H~g~V~~l~~~~~~~~lvsgS~D~t 272 (537)
T KOG0274|consen 204 LGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN-GYLILTRLVG--------HFGGVWGLAFPSGGDKLVSGSTDKT 272 (537)
T ss_pred cccCcchhhhheee--cCeEEecCCCceeEEeeccc-ceEEEeeccC--------CCCCceeEEEecCCCEEEEEecCCc
Confidence 344443 3 88887 66899999999999999987 766666 887 9999999999887889999999999
Q ss_pred EEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccEEEEec-cceee
Q 001567 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCL 406 (1052)
Q Consensus 331 v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~ 406 (1052)
++|||..++.+.+++.+| .+.+.++...+ ..+.+|+ ++++|+.+++.++.+..+|...|.++.. +..++
T Consensus 273 ~rvWd~~sg~C~~~l~gh-~stv~~~~~~~------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lv 345 (537)
T KOG0274|consen 273 ERVWDCSTGECTHSLQGH-TSSVRCLTIDP------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLV 345 (537)
T ss_pred EEeEecCCCcEEEEecCC-CceEEEEEccC------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEE
Confidence 999999999999999998 77777776644 3455665 9999999999999999999999988888 88999
Q ss_pred eeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCC-c
Q 001567 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK-K 484 (1052)
Q Consensus 407 s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~-~ 484 (1052)
+|+.|+++++|++.+++- ..++.+|+..|.++.+.+. .++.+|+.|+++ +||+.++ +
T Consensus 346 sgs~d~~v~VW~~~~~~c--------------------l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~ 404 (537)
T KOG0274|consen 346 SGSYDGTVKVWDPRTGKC--------------------LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRK 404 (537)
T ss_pred EEecCceEEEEEhhhcee--------------------eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhh
Confidence 999999999999885543 6778899999999988765 999999999999 9999988 3
Q ss_pred EEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCCCCCCcceeEEeecC--CccEEEEeeCCEEEEEEcC
Q 001567 485 WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLL--AKPIVMDVYEDYILVTYRP 562 (1052)
Q Consensus 485 w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~elrly~~~~ld~~~~l~~~~~~--~~~~~~s~~~~~llv~~~d 562 (1052)
.... ..+.. ..+.++.-++++|+.+ ..+..|++|+.... ..+....-+ ..+.++......+++.+.|
T Consensus 405 c~~t--l~~h~-~~v~~l~~~~~~Lvs~-----~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~~~~il~s~~~ 473 (537)
T KOG0274|consen 405 CIHT--LQGHT-SLVSSLLLRDNFLVSS-----SADGTIKLWDAEEG---ECLRTLEGRHVGGVSALALGKEEILCSSDD 473 (537)
T ss_pred hhhh--hcCCc-ccccccccccceeEec-----cccccEEEeecccC---ceeeeeccCCcccEEEeecCcceEEEEecC
Confidence 3221 12222 2345777788889887 44568999977421 233333332 2233344445778889999
Q ss_pred CeEEEEEEE
Q 001567 563 FDVHIFHVK 571 (1052)
Q Consensus 563 ~~i~l~~~~ 571 (1052)
+.+.+|++.
T Consensus 474 ~~~~l~dl~ 482 (537)
T KOG0274|consen 474 GSVKLWDLR 482 (537)
T ss_pred CeeEEEecc
Confidence 999999886
No 88
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.5e-18 Score=174.70 Aligned_cols=235 Identities=14% Similarity=0.215 Sum_probs=180.8
Q ss_pred CCCCeE-EEEEcCC-CCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcE
Q 001567 255 GSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGL 331 (1052)
Q Consensus 255 gh~~~v-~va~spd-~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp-Dg~~Lasg~~Dg~v 331 (1052)
...+++ .++||+. ...+++++.||++++||......+++.++. |...|.++.|++ +++.+.+++.|++|
T Consensus 58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE--------H~~EV~Svdwn~~~r~~~ltsSWD~Ti 129 (311)
T KOG0277|consen 58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE--------HKREVYSVDWNTVRRRIFLTSSWDGTI 129 (311)
T ss_pred ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh--------hhhheEEeccccccceeEEeeccCCce
Confidence 346788 9999996 456788899999999998776678888887 999999999998 67788888999999
Q ss_pred EEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccEEEEec----cce
Q 001567 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKC 404 (1052)
Q Consensus 332 ~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~----~k~ 404 (1052)
|+|+..-+..++|+.|| .+-|...+|+|..+ ..+++.+ +.++||.....-.+.+..|...+++.++ -..
T Consensus 130 KLW~~~r~~Sv~Tf~gh-~~~Iy~a~~sp~~~---nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~v 205 (311)
T KOG0277|consen 130 KLWDPNRPNSVQTFNGH-NSCIYQAAFSPHIP---NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNV 205 (311)
T ss_pred EeecCCCCcceEeecCC-ccEEEEEecCCCCC---CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcE
Confidence 99999999999999998 78899999999862 5566555 8999998654333447788888988888 347
Q ss_pred eeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccC-CCEEEEEeCCceE-EEEccC
Q 001567 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQ 482 (1052)
Q Consensus 405 ~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~Spd-G~~lavag~dG~i-lwd~~s 482 (1052)
++|++.|+.++.||+..-..- ...+.+|.-.||.+.|||. ...||+|+.|-++ +||...
T Consensus 206 l~Tg~vd~~vr~wDir~~r~p-------------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 206 LATGGVDNLVRGWDIRNLRTP-------------------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER 266 (311)
T ss_pred EEecCCCceEEEEehhhcccc-------------------ceeecCCceEEEEEecCcchhhHhhhccccceEEeccccc
Confidence 889999999999998765441 2466799999999999997 5689999999999 999864
Q ss_pred CcEEEecCccceeeeEEEEEEEe---CCEEEEEEEecCCCeEEEEEee
Q 001567 483 KKWRVFGDITQEQKIQSKGLLWL---GKIIVVCNYIDSSNTYELLFYP 527 (1052)
Q Consensus 483 ~~w~~f~~~~~e~~~~v~gl~W~---~~~li~~~~~~~~~~~elrly~ 527 (1052)
+.- ..+...+..+| +.|+.|. +..+..++. +..+.+|+
T Consensus 267 ~ds-~~e~~~~HtEF-v~g~Dws~~~~~~vAs~gW-----De~l~Vw~ 307 (311)
T KOG0277|consen 267 QDS-AIETVDHHTEF-VCGLDWSLFDPGQVASTGW-----DELLYVWN 307 (311)
T ss_pred chh-hhhhhhccceE-EeccccccccCceeeeccc-----ccceeeec
Confidence 321 11112222333 4466664 445555533 34566775
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=4.8e-18 Score=185.60 Aligned_cols=288 Identities=15% Similarity=0.148 Sum_probs=216.3
Q ss_pred eeeeeecccceecCCCCeE-EEEEcCCCCE-EEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCC
Q 001567 242 LKLAEFIKIDKELGSGDAV-CASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN 319 (1052)
Q Consensus 242 i~~w~~~~~~~~~gh~~~v-~va~spd~~~-lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg 319 (1052)
.+-|+..+........++| +++|||...+ +|+.+ .-.|.+|+..+ .+..+++.. ....|.++.|..||
T Consensus 11 ~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~-~~~~k~~sr--------Fk~~v~s~~fR~DG 80 (487)
T KOG0310|consen 11 IRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVT-RSVRKTFSR--------FKDVVYSVDFRSDG 80 (487)
T ss_pred chhhhhhcccccccccCcceeEecCCCCCCceEEec-ccEEEEEecch-hhhhhhHHh--------hccceeEEEeecCC
Confidence 3445444332222334566 9999997554 55544 34689999876 555555554 56789999999999
Q ss_pred CEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccE
Q 001567 320 SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV 396 (1052)
Q Consensus 320 ~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v 396 (1052)
++||.|.+.|.|+|+|..+...+..+.+| +.++....|+|.+ +..+++|+ .++.|+..+......+.+|.+.|
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR~~~ah-~apv~~~~f~~~d---~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYV 156 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILRQLYAH-QAPVHVTKFSPQD---NTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYV 156 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHHHHhhc-cCceeEEEecccC---CeEEEecCCCceEEEEEcCCcEEEEEecCCccee
Confidence 99999999999999997776667788888 8899999999986 25677776 78899999888766789999999
Q ss_pred EEEec----cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeC
Q 001567 397 LIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (1052)
Q Consensus 397 ~~~s~----~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~ 472 (1052)
.+.++ ...++|||.||++++||......+ ..-..|.-||..+.+-|.|..+|+||.
T Consensus 157 R~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~--------------------v~elnhg~pVe~vl~lpsgs~iasAgG 216 (487)
T KOG0310|consen 157 RCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR--------------------VVELNHGCPVESVLALPSGSLIASAGG 216 (487)
T ss_pred EeeccccCCCeEEEecCCCceEEEEEeccCCce--------------------eEEecCCCceeeEEEcCCCCEEEEcCC
Confidence 76666 346899999999999998765542 234578899999999999999999998
Q ss_pred CceEEEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCCCCCCcceeEEeecCCccEEEEe-
Q 001567 473 HGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDV- 551 (1052)
Q Consensus 473 dG~ilwd~~s~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~elrly~~~~ld~~~~l~~~~~~~~~~~~s~- 551 (1052)
...-+||+.+|.-.......|.+.++|-.+.-.+..|+++ +-+..+++|+. .+..+.+...+|++++.+..
T Consensus 217 n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~-----sLD~~VKVfd~---t~~Kvv~s~~~~~pvLsiavs 288 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSG-----SLDRHVKVFDT---TNYKVVHSWKYPGPVLSIAVS 288 (487)
T ss_pred CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeec-----ccccceEEEEc---cceEEEEeeecccceeeEEec
Confidence 7766999998775543333355554454444456788887 56678999975 35568888899999887754
Q ss_pred -eCCEEEEEEcCCeEEEEEEE
Q 001567 552 -YEDYILVTYRPFDVHIFHVK 571 (1052)
Q Consensus 552 -~~~~llv~~~d~~i~l~~~~ 571 (1052)
+++.++++-.||.+.+=+.+
T Consensus 289 ~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 289 PDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred CCCceEEEecccceeeeehhh
Confidence 45677777778766665443
No 90
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=8.9e-18 Score=174.13 Aligned_cols=220 Identities=15% Similarity=0.251 Sum_probs=178.7
Q ss_pred eCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCC--EEEEEeeCCeEEEEecCCCCceeEEEEeecCC
Q 001567 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQ--ILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (1052)
Q Consensus 228 ~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~--~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~ 301 (1052)
-+|+++++|+.|.+|+++|..+.... ..|.+.+ ++.|.+... .|.+|+.||.|.+|++.. ..++.+++.
T Consensus 51 Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-W~~~~slK~---- 125 (362)
T KOG0294|consen 51 VSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-WELLKSLKA---- 125 (362)
T ss_pred ecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC-eEEeeeecc----
Confidence 47999999999999999998866443 6788888 999999876 899999999999999987 788889998
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCcc-ceeeee-eeeEEe
Q 001567 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLMSGT-SMMQWD 379 (1052)
Q Consensus 302 ~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~-~l~sg~-~~~~W~ 379 (1052)
|++.|+.++.+|.|+.-.+.+.|+.+++||+-.|+.-..++-. ...+.+.|+|.| + +.+.+. .+-+|.
T Consensus 126 ----H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~~at~v~w~~~G----d~F~v~~~~~i~i~q 195 (362)
T KOG0294|consen 126 ----HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--NKATLVSWSPQG----DHFVVSGRNKIDIYQ 195 (362)
T ss_pred ----cccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC--CcceeeEEcCCC----CEEEEEeccEEEEEe
Confidence 9999999999999999889999999999999776644333321 123458899988 5 444433 788999
Q ss_pred cCCceEEEEecCCcccEEEEec--cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEE
Q 001567 380 EYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (1052)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~s~--~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~ 457 (1052)
.+...++..... ..++.+..| +..+++|..++.+.+||.... ..+..+.+|...|..
T Consensus 196 ~d~A~v~~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~--------------------~~~~~~~AH~~RVK~ 254 (362)
T KOG0294|consen 196 LDNASVFREIEN-PKRILCATFLDGSELLVGGDNEWISLKDTDSD--------------------TPLTEFLAHENRVKD 254 (362)
T ss_pred cccHhHhhhhhc-cccceeeeecCCceEEEecCCceEEEeccCCC--------------------ccceeeecchhheee
Confidence 988887776544 345666666 778889999999999885331 136788899999999
Q ss_pred EEE--ccCCCEEEEEeCCceE-EEEccCC
Q 001567 458 VAA--SKDGMFLAVAGLHGLI-LYDIRQK 483 (1052)
Q Consensus 458 va~--SpdG~~lavag~dG~i-lwd~~s~ 483 (1052)
+.+ .|++.||+++|.||.| +||+...
T Consensus 255 i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 255 IASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEecCCceEEEEeccCceEEEEEcccc
Confidence 985 6889999999999999 9998654
No 91
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.80 E-value=3e-16 Score=180.75 Aligned_cols=329 Identities=18% Similarity=0.223 Sum_probs=231.3
Q ss_pred EEEEEecCCc-ceEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEec
Q 001567 211 IIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDL 285 (1052)
Q Consensus 211 i~~i~~~~~~-~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~ 285 (1052)
|+++.+.+.+ |..+. |+.+|.+++|+..+++.. +++.+.| ++.-+|-=..+|+|..||+|.++++
T Consensus 162 Ital~HP~TYLNKIvv----------Gs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNl 231 (910)
T KOG1539|consen 162 ITALLHPSTYLNKIVV----------GSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNL 231 (910)
T ss_pred eeeEecchhheeeEEE----------eecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEc
Confidence 7777664443 44444 444555667888877654 6777888 9999999999999999999999999
Q ss_pred CCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCC-EEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCC
Q 001567 286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC 364 (1052)
Q Consensus 286 ~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~-~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~ 364 (1052)
.. ++.+.+++. ..|+|++++|..||. .+|+|...|.+.+||+.+.++...++..|.+++....|-|..
T Consensus 232 K~-dkil~sFk~--------d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-- 300 (910)
T KOG1539|consen 232 KF-DKILMSFKQ--------DWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-- 300 (910)
T ss_pred cc-CcEEEEEEc--------cccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC--
Confidence 98 888888885 469999999999997 677788889999999999999988886547888888888775
Q ss_pred Cccceeeee---eeeEEecCC----ceEEEEecCCcccEEEEec----cceeeeeccCCceeeeEeeecCceEEEEe---
Q 001567 365 KYEPLMSGT---SMMQWDEYG----YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQ--- 430 (1052)
Q Consensus 365 ~~~~l~sg~---~~~~W~~~~----~~l~~~~~~~~~~v~~~s~----~k~~~s~s~d~~v~~w~~~~~~~~l~~~~--- 430 (1052)
..+++.+ +.+.|-.++ .+++....||.....++.+ +..+.+++.|++.+..++.+....--+.+
T Consensus 301 --pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~ 378 (910)
T KOG1539|consen 301 --PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN 378 (910)
T ss_pred --ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence 5555554 677775542 3778888899887766555 77889999999887766543211100000
Q ss_pred --c------C----------------Ccchhe----------------ee--------eeccCcccccCCCcEEEEEEcc
Q 001567 431 --S------E----------------DTDELK----------------IL--------HLNLPVSYISQNWPVQHVAASK 462 (1052)
Q Consensus 431 --~------~----------------~~~~~~----------------w~--------~~~~p~~~~~h~~~V~~va~Sp 462 (1052)
+ . +.-+.. |+ +.--|..+......++++++|+
T Consensus 379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 0 0 000111 31 1222333444446799999999
Q ss_pred CCCEEEEEeCCceE-EEEccCCcEE-EecCccceeeeEEEEEEEe--CCEEEEEEEecCCCeEEEEEeeCCCCCCcceeE
Q 001567 463 DGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLC 538 (1052)
Q Consensus 463 dG~~lavag~dG~i-lwd~~s~~w~-~f~~~~~e~~~~v~gl~W~--~~~li~~~~~~~~~~~elrly~~~~ld~~~~l~ 538 (1052)
+|++..+|...|.| +||+++|.-+ .|++ .+..+..|+|++-. +..+|+| +.+.-+.+|++.+ ..++.
T Consensus 459 CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~-~~ah~~~V~gla~D~~n~~~vsa-----~~~Gilkfw~f~~---k~l~~ 529 (910)
T KOG1539|consen 459 CGNFVFIGYSKGTIDRFNMQSGIHRKSFGD-SPAHKGEVTGLAVDGTNRLLVSA-----GADGILKFWDFKK---KVLKK 529 (910)
T ss_pred cCceEEEeccCCeEEEEEcccCeeeccccc-CccccCceeEEEecCCCceEEEc-----cCcceEEEEecCC---cceee
Confidence 99999999999999 9999999865 5652 22233457776664 5568887 4457799998852 12444
Q ss_pred EeecCCccEEEEeeC--CEEEEEEcCCeEEEEEEE
Q 001567 539 RKSLLAKPIVMDVYE--DYILVTYRPFDVHIFHVK 571 (1052)
Q Consensus 539 ~~~~~~~~~~~s~~~--~~llv~~~d~~i~l~~~~ 571 (1052)
...+...+..+...+ +.++++++|..|.+++..
T Consensus 530 ~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~ 564 (910)
T KOG1539|consen 530 SLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV 564 (910)
T ss_pred eeccCCCcceeeeeehhhhhhhhcCceeEEEEEch
Confidence 555555444444333 456668899999999885
No 92
>PTZ00421 coronin; Provisional
Probab=99.80 E-value=1.8e-17 Score=195.19 Aligned_cols=196 Identities=12% Similarity=0.170 Sum_probs=151.8
Q ss_pred cCCCccEEEEEecCCcceEEEEee-CCcEEEEEecCCceeeeeecccc----------eecCCCCeE-EEEEcCCC-CEE
Q 001567 205 FPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKID----------KELGSGDAV-CASIAPEQ-QIL 271 (1052)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~-dG~~~~~~~~d~~i~~w~~~~~~----------~~~gh~~~v-~va~spd~-~~l 271 (1052)
.+|...|.+++| +| |++++++++.|+++++|+..... .+.+|...| +++|+|++ .+|
T Consensus 72 ~GH~~~V~~v~f----------sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 72 LGQEGPIIDVAF----------NPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVL 141 (493)
T ss_pred eCCCCCEEEEEE----------cCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEE
Confidence 466777888775 66 78899999999999999976431 237899999 99999985 699
Q ss_pred EEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccC
Q 001567 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS 351 (1052)
Q Consensus 272 Asgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~ 351 (1052)
|+|+.|++|+|||+.+ +..+..+.. |.+.|.+++|+|||..||+|+.|++|++||+.++..+.++.+|...
T Consensus 142 aSgs~DgtVrIWDl~t-g~~~~~l~~--------h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 142 ASAGADMVVNVWDVER-GKAVEVIKC--------HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred EEEeCCCEEEEEECCC-CeEEEEEcC--------CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence 9999999999999987 777777777 9999999999999999999999999999999999888888887433
Q ss_pred ceeeeeEcCCCCCCccceeeee-------eeeEEecCCce-EEEEecCCc-ccE--EEEec-cceeeeec-cCCceeeeE
Q 001567 352 SISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYR-LYAIEEGSS-ERV--LIFSF-GKCCLNRG-VSGMTYARQ 418 (1052)
Q Consensus 352 ~v~s~~~sp~~~~~~~~l~sg~-------~~~~W~~~~~~-l~~~~~~~~-~~v--~~~s~-~k~~~s~s-~d~~v~~w~ 418 (1052)
.+..+.|.+++ ..+++++ ++++||..... .+.....+. ..+ ..++. ++.+++++ .|+.+++|+
T Consensus 213 ~~~~~~w~~~~----~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwd 288 (493)
T PTZ00421 213 KSQRCLWAKRK----DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFE 288 (493)
T ss_pred cceEEEEcCCC----CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEE
Confidence 44566777775 4454322 69999987543 333322222 223 33455 66777766 599999999
Q ss_pred eeecC
Q 001567 419 VIYGE 423 (1052)
Q Consensus 419 ~~~~~ 423 (1052)
+..+.
T Consensus 289 l~~~~ 293 (493)
T PTZ00421 289 LMNER 293 (493)
T ss_pred eeCCc
Confidence 87544
No 93
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.79 E-value=3.2e-16 Score=171.06 Aligned_cols=421 Identities=16% Similarity=0.157 Sum_probs=243.5
Q ss_pred ccCCceeecCCCCCCCCCc--eEEEEeeCC-eEEEEEcCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCcc
Q 001567 4 AYGWPQVIPLEQGLCPSSQ--QIIYFKVNN-GLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK 80 (1052)
Q Consensus 4 ~~g~P~~~~~~~~~~~~~~--~vv~fSpdg-~llA~~sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~ 80 (1052)
+--|||--.+++-. .+.+ ....|-|-+ .++.+.+.+.+..|+.+ .+....... .-+.- +.-.+.+++|.++|.
T Consensus 184 VWdWqk~~~~~~vk-~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~-~~~l~k~~~-~fek~-ekk~Vl~v~F~engd 259 (626)
T KOG2106|consen 184 VWDWQKKAKLGPVK-TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLR-GGSLVKRQG-IFEKR-EKKFVLCVTFLENGD 259 (626)
T ss_pred hhhchhhhccCcce-eccceEEEEEeccCCCcEEEEeCCceEEEEEcc-CCceEEEee-ccccc-cceEEEEEEEcCCCC
Confidence 34577743333221 1223 335788765 47888899999999886 333221111 11111 124578999999996
Q ss_pred EEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCC-eEEEEecCCcEEEEec
Q 001567 81 LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNK-HMLLGLSDGSLYSISW 159 (1052)
Q Consensus 81 ~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~-~llv~t~dg~v~~~~w 159 (1052)
. +++.++|++.||+.....-..+. ..+++.|.++..-++ .|+.|.+|..|. .|
T Consensus 260 v-iTgDS~G~i~Iw~~~~~~~~k~~-----------------------~aH~ggv~~L~~lr~GtllSGgKDRki~--~W 313 (626)
T KOG2106|consen 260 V-ITGDSGGNILIWSKGTNRISKQV-----------------------HAHDGGVFSLCMLRDGTLLSGGKDRKII--LW 313 (626)
T ss_pred E-EeecCCceEEEEeCCCceEEeEe-----------------------eecCCceEEEEEecCccEeecCccceEE--ec
Confidence 5 68899999999998432211111 134455656554433 455677777765 47
Q ss_pred cCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecC
Q 001567 160 KGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK 239 (1052)
Q Consensus 160 d~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d 239 (1052)
+........++ .|.....++.+.-.-.. +...... +..-......+..+...-+ .....-++..|+...+++++.|
T Consensus 314 d~~y~k~r~~e-lPe~~G~iRtv~e~~~d-i~vGTtr-N~iL~Gt~~~~f~~~v~gh-~delwgla~hps~~q~~T~gqd 389 (626)
T KOG2106|consen 314 DDNYRKLRETE-LPEQFGPIRTVAEGKGD-ILVGTTR-NFILQGTLENGFTLTVQGH-GDELWGLATHPSKNQLLTCGQD 389 (626)
T ss_pred ccccccccccc-CchhcCCeeEEecCCCc-EEEeecc-ceEEEeeecCCceEEEEec-ccceeeEEcCCChhheeeccCc
Confidence 75443222221 33444445544432222 2111100 0000001112222222222 2233446678899999999999
Q ss_pred CceeeeeecccceecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCC
Q 001567 240 KGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD 318 (1052)
Q Consensus 240 ~~i~~w~~~~~~~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpD 318 (1052)
+.+++|+..+..--.-..+++ |+.|+|.| .+|.|+..|...|.|.++ .. +-+++. ...++++++|+||
T Consensus 390 k~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~-~~-lv~~~~--------d~~~ls~v~ysp~ 458 (626)
T KOG2106|consen 390 KHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTET-QD-LVTIHT--------DNEQLSVVRYSPD 458 (626)
T ss_pred ceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccc-ce-eEEEEe--------cCCceEEEEEcCC
Confidence 999999944332113345667 99999999 999999999999999876 33 334444 4789999999999
Q ss_pred CCEEEEEEcCCcEEEEEcCC-CeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcc
Q 001567 319 NSAFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE 394 (1052)
Q Consensus 319 g~~Lasg~~Dg~v~vWd~~~-~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~ 394 (1052)
|.+||+|+.|+.|.|+.+.. ++......-++-+.++.+.||+|+ +++.+-+ .+..|.+.........+
T Consensus 459 G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds----~~~~~~S~d~eiLyW~~~~~~~~ts~k---- 530 (626)
T KOG2106|consen 459 GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS----QFLVSNSGDYEILYWKPSECKQITSVK---- 530 (626)
T ss_pred CCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC----ceEEeccCceEEEEEccccCcccceec----
Confidence 99999999999999999853 444444444334889999999998 8887665 78899655433222111
Q ss_pred cE-EEEec--cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeecc-------C-cccccCCCcEEEEEEccC
Q 001567 395 RV-LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL-------P-VSYISQNWPVQHVAASKD 463 (1052)
Q Consensus 395 ~v-~~~s~--~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~-------p-~~~~~h~~~V~~va~Spd 463 (1052)
.| |.-.. ....+.++.|++...-.......+ ++..+++.. ..+..+. | ..|.+|..-|.+++|+-+
T Consensus 531 DvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~-~lA~gdd~g--~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~ 607 (626)
T KOG2106|consen 531 DVKWATYTCTLGFEVFGGSDGTDINAVARSHCEK-LLASGDDFG--KVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCK 607 (626)
T ss_pred ceeeeeeEEEEEEEEecccCCchHHHhhhhhhhh-hhhccccCc--eEEEEccccCCCcccceeeccccceeEEEEEeeC
Confidence 01 00000 011122333333211000000000 111111111 0111111 2 478899999999999988
Q ss_pred CCEEEEEeCCceE-EEEc
Q 001567 464 GMFLAVAGLHGLI-LYDI 480 (1052)
Q Consensus 464 G~~lavag~dG~i-lwd~ 480 (1052)
...+.+.|.|..+ .|++
T Consensus 608 d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 608 DSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CceEEecCCCceEEEEEe
Confidence 8888887899988 8975
No 94
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=6.6e-18 Score=174.11 Aligned_cols=272 Identities=13% Similarity=0.161 Sum_probs=208.8
Q ss_pred ccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCe
Q 001567 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGV 279 (1052)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~ 279 (1052)
+.+|+..|..++ ......++.+++.|.+..+|....+.++ .||.+.| |+.|++.+.++++|+.|++
T Consensus 144 ~~GHkDGiW~Va----------a~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t 213 (481)
T KOG0300|consen 144 LEGHKDGIWHVA----------ADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET 213 (481)
T ss_pred hcccccceeeeh----------hhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc
Confidence 346666676654 2233347778889999999999999887 7999999 9999999999999999999
Q ss_pred EEEEecC------CCC---------------ceeEEEEee---c-----CCC--CCCCCCCeeEEEECCCCCEEEEEEcC
Q 001567 280 VELYDLA------ESA---------------SLIRTVSLY---D-----WGY--SMDDTGPVSCIAWTPDNSAFAVGWKS 328 (1052)
Q Consensus 280 V~vwd~~------~~~---------------~~~~~l~~~---~-----~~~--~~~h~g~V~~l~~SpDg~~Lasg~~D 328 (1052)
-.||... .+. +..+-..+. + .|. -.+|.+.|.+..|-..|+.+++++.|
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD 293 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD 293 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence 9999731 100 000000000 0 000 13599999999999999999999999
Q ss_pred CcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecC-CceEEEEecCCcccEEEEec--c
Q 001567 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY-GYRLYAIEEGSSERVLIFSF--G 402 (1052)
Q Consensus 329 g~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~-~~~l~~~~~~~~~~v~~~s~--~ 402 (1052)
++..+||+.++.++..|.|| ....+.+.-+|.. ..+++.+ +.++||.. .-+-+.++.||.+.|....| +
T Consensus 294 RTAnlwDVEtge~v~~LtGH-d~ELtHcstHptQ----rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d 368 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGH-DSELTHCSTHPTQ----RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD 368 (481)
T ss_pred ccceeeeeccCceeccccCc-chhccccccCCcc----eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC
Confidence 99999999999999999999 7888888888887 7777776 88999975 33556778999999966555 8
Q ss_pred ceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEcc
Q 001567 403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (1052)
Q Consensus 403 k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~ 481 (1052)
..+++|+.|.++++|++..... |...+-...|++.+++|..++.+|.--.+..+ +||++
T Consensus 369 d~vVSgSDDrTvKvWdLrNMRs--------------------plATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 369 DRVVSGSDDRTVKVWDLRNMRS--------------------PLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred CceeecCCCceEEEeeeccccC--------------------cceeeecCCccceeEeecCCceEEeccCCceEEEEecC
Confidence 8999999999999999987665 44444566789999999999999999999999 99999
Q ss_pred CCcEEEecC-ccceeeeEEEEEEEeCCEEE
Q 001567 482 QKKWRVFGD-ITQEQKIQSKGLLWLGKIIV 510 (1052)
Q Consensus 482 s~~w~~f~~-~~~e~~~~v~gl~W~~~~li 510 (1052)
..+.-.... ..|-..-.|.+.+|..+..+
T Consensus 429 G~RlaRlPrtsRqgHrRMV~c~AW~eehp~ 458 (481)
T KOG0300|consen 429 GNRLARLPRTSRQGHRRMVTCCAWLEEHPA 458 (481)
T ss_pred CCccccCCcccccccceeeeeeeccccCcc
Confidence 887654431 11222234667889866555
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1e-18 Score=195.79 Aligned_cols=222 Identities=17% Similarity=0.211 Sum_probs=187.0
Q ss_pred eCCcEEEEEecCCceeeeeecccce---------ecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCC-ceeEEEE
Q 001567 228 SNGQLMSCSVSKKGLKLAEFIKIDK---------ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVS 296 (1052)
Q Consensus 228 ~dG~~~~~~~~d~~i~~w~~~~~~~---------~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~-~~~~~l~ 296 (1052)
|.|+++++++.|+.++.|+...... ...|.+.| .++...+++.++++|.|-+|++|+....+ .++.++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 6788999999999999997653221 25689999 89999999999999999999999997632 5666777
Q ss_pred eecCCCCCCCCCCeeEEEE-CCCCCEEEEEEcCCcEEEEEcCCCe--EE--------EEec-ccccCceeeeeEcCCCCC
Q 001567 297 LYDWGYSMDDTGPVSCIAW-TPDNSAFAVGWKSRGLTVWSVSGCR--LM--------STIR-QISLSSISSPIVKPNQDC 364 (1052)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~-SpDg~~Lasg~~Dg~v~vWd~~~~~--l~--------~tl~-~~~~~~v~s~~~sp~~~~ 364 (1052)
. |+.-|.|++. -++...+|+|+-|+.|.+||+..+. ++ +++. |+ ..+|.+++-.+.+
T Consensus 115 ~--------H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~-k~siYSLA~N~t~-- 183 (735)
T KOG0308|consen 115 T--------HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP-KDSIYSLAMNQTG-- 183 (735)
T ss_pred c--------ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC-ccceeeeecCCcc--
Confidence 6 9999999999 8899999999999999999998762 22 3333 33 6778888888887
Q ss_pred Cccceeeee---eeeEEecCCceEEEEecCCcccEEEE--ec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchhe
Q 001567 365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (1052)
Q Consensus 365 ~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~--s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~ 438 (1052)
..+++|+ .+++|++.+.+-++.+.||.+.|.++ +- |..++|+|.|+++++|++.+...
T Consensus 184 --t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC-------------- 247 (735)
T KOG0308|consen 184 --TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC-------------- 247 (735)
T ss_pred --eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccce--------------
Confidence 7888888 78899999999888889999988444 33 99999999999999999987665
Q ss_pred eeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccC
Q 001567 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1052)
Q Consensus 439 w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s 482 (1052)
..+|..|...|+++..+|+=+++.+||+||.+ .=|+.+
T Consensus 248 ------l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 248 ------LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred ------eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 67799999999999999999999999999999 666654
No 96
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.79 E-value=2.8e-17 Score=166.75 Aligned_cols=279 Identities=11% Similarity=0.120 Sum_probs=209.2
Q ss_pred ecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 001567 253 ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (1052)
Q Consensus 253 ~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v 331 (1052)
++||+.++ -+.+|.+|.+|.+++.|.+..||--.+ ++.+.+..+ |+|.|+|++..-+.+.+++|+.|.++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty~G--------HtGavW~~Did~~s~~liTGSAD~t~ 76 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTYDG--------HTGAVWCCDIDWDSKHLITGSADQTA 76 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecC-CceeeeecC--------CCceEEEEEecCCcceeeecccccee
Confidence 47999999 999999999999999999999998766 888999998 99999999999999999999999999
Q ss_pred EEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeee--------eeeeEEecC-------CceEEEEecCCcccE
Q 001567 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--------TSMMQWDEY-------GYRLYAIEEGSSERV 396 (1052)
Q Consensus 332 ~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg--------~~~~~W~~~-------~~~l~~~~~~~~~~v 396 (1052)
++||+.+|+.+.+++-. ..|..+.|++++ ..++-. +.+-+++.. +.+.+.....+.+.+
T Consensus 77 kLWDv~tGk~la~~k~~--~~Vk~~~F~~~g----n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski 150 (327)
T KOG0643|consen 77 KLWDVETGKQLATWKTN--SPVKRVDFSFGG----NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI 150 (327)
T ss_pred EEEEcCCCcEEEEeecC--CeeEEEeeccCC----cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence 99999999999998764 679999999988 333221 145566654 445455554455555
Q ss_pred --EEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCC
Q 001567 397 --LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (1052)
Q Consensus 397 --~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~d 473 (1052)
..+.+ ++.+++|..||.+..||+.++..- ...-..|+..|+.+++|||+.++++|+.|
T Consensus 151 t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~-------------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 151 TSALWGPLGETIIAGHEDGSISIYDARTGKEL-------------------VDSDEEHSSKINDLQFSRDRTYFITGSKD 211 (327)
T ss_pred eeeeecccCCEEEEecCCCcEEEEEcccCcee-------------------eechhhhccccccccccCCcceEEecccC
Confidence 44555 899999999999999999877552 23344577899999999999999999999
Q ss_pred ceE-EEEccCCcE-EEecCccceeeeEEEEEEEeCCEEEEEEEec---------CCCeEEEEEeeCC---CCCCcceeEE
Q 001567 474 GLI-LYDIRQKKW-RVFGDITQEQKIQSKGLLWLGKIIVVCNYID---------SSNTYELLFYPRY---HLDQSSLLCR 539 (1052)
Q Consensus 474 G~i-lwd~~s~~w-~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~---------~~~~~elrly~~~---~ld~~~~l~~ 539 (1052)
.+. +||..+-.. |.|. .|..+++..+.-..+++|.++-.+ +.+.+|-|+|..- .+.. ...
T Consensus 212 ttakl~D~~tl~v~Kty~---te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr---vkG 285 (327)
T KOG0643|consen 212 TTAKLVDVRTLEVLKTYT---TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR---VKG 285 (327)
T ss_pred ccceeeeccceeeEEEee---ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc---ccc
Confidence 999 999977432 3333 233344555666667666652211 1234566666541 1110 112
Q ss_pred eecCCccEEEEeeCCEEEEEEcCCeEEEEEEE
Q 001567 540 KSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (1052)
Q Consensus 540 ~~~~~~~~~~s~~~~~llv~~~d~~i~l~~~~ 571 (1052)
+.-|-..+.+.|.|........||.|++.++.
T Consensus 286 HFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 286 HFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 33344557788888887778889999998775
No 97
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.79 E-value=7.3e-18 Score=173.66 Aligned_cols=282 Identities=12% Similarity=0.154 Sum_probs=194.0
Q ss_pred eEEEEeeCCeEEEEEc-CCcEEEeecCC------cee-----EEE--EEecChhhhhhcCccceEEEcCCccEEEEEeCC
Q 001567 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQ------HKV-----RLG--KYKRDSESVQREGENLQAVWSPDTKLIAVVTSS 88 (1052)
Q Consensus 23 ~vv~fSpdg~llA~~s-d~~v~IW~~~~------~~~-----~l~--~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d 88 (1052)
...+|||||.++|+++ |.+|+|.|++. |.. ..+ ...|+.- .+-.++.++.|.|-.+.|++++.|
T Consensus 116 R~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY--DH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 116 RAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY--DHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred eeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh--hccCcccceeecchhheEEeccCC
Confidence 5578999999999996 77899999961 110 000 1223321 244678899999999999999999
Q ss_pred cEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCcccccee
Q 001567 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFE 168 (1052)
Q Consensus 89 g~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~ 168 (1052)
++|++||......+..+ ++.-+.......+|.|.|+.+++|+.-..+++++.+ +.+.+.
T Consensus 194 ~tvKlFDfsK~saKrA~-------------------K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~--T~Qcfv 252 (430)
T KOG0640|consen 194 NTVKLFDFSKTSAKRAF-------------------KVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN--TYQCFV 252 (430)
T ss_pred CeEEEEecccHHHHHHH-------------------HHhhccceeeeEeecCCCceEEEecCCCceeEEecc--ceeEee
Confidence 99999998643321111 100011111223456788999999999999886544 323321
Q ss_pred ecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeec
Q 001567 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI 248 (1052)
Q Consensus 169 l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~ 248 (1052)
...+..++...|+++.| ++.|+++++++.||.+++||+.
T Consensus 253 -------------------------------sanPd~qht~ai~~V~Y----------s~t~~lYvTaSkDG~IklwDGV 291 (430)
T KOG0640|consen 253 -------------------------------SANPDDQHTGAITQVRY----------SSTGSLYVTASKDGAIKLWDGV 291 (430)
T ss_pred -------------------------------ecCcccccccceeEEEe----------cCCccEEEEeccCCcEEeeccc
Confidence 01233456778888887 7899999999999999999999
Q ss_pred cccee----cCCCCe-E-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCe---eEEEECCCC
Q 001567 249 KIDKE----LGSGDA-V-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPV---SCIAWTPDN 319 (1052)
Q Consensus 249 ~~~~~----~gh~~~-v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V---~~l~~SpDg 319 (1052)
.+++. ..|.++ | +..|..+|++|.+.+.|.+|++|.+.+ ++++....+.. -+|.+ +...|....
T Consensus 292 S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t-~R~l~~YtGAg------~tgrq~~rtqAvFNhtE 364 (430)
T KOG0640|consen 292 SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST-GRMLKEYTGAG------TTGRQKHRTQAVFNHTE 364 (430)
T ss_pred cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC-CceEEEEecCC------cccchhhhhhhhhcCcc
Confidence 88775 457655 4 778999999999999999999999998 88877766521 11211 223344433
Q ss_pred CEEEEEE-cCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEe
Q 001567 320 SAFAVGW-KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (1052)
Q Consensus 320 ~~Lasg~-~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~ 379 (1052)
.++..-. ..+.+.-||..++....-+.-.|.+.+..+.-||.+ ..+++++ ..++|-
T Consensus 365 dyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~----p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 365 DYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVE----PAFMTCSDDFRARFWY 424 (430)
T ss_pred ceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCC----Cceeeecccceeeeee
Confidence 3333322 346788999887765554443347888888889987 6677776 778884
No 98
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9.9e-17 Score=167.40 Aligned_cols=277 Identities=16% Similarity=0.177 Sum_probs=199.3
Q ss_pred cCccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEE
Q 001567 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (1052)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~ll 146 (1052)
.|.+.++.|++||..+++++.|..++|||...+.....+..+ .-...+.++......++
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk---------------------kyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK---------------------KYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc---------------------cccccEEEEecCCceEE
Confidence 577899999999999999999999999999866532221110 00112446666666666
Q ss_pred EEec--CCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEE
Q 001567 147 LGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1052)
Q Consensus 147 v~t~--dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (1052)
.++. |.+|+.++........ ...+|+..|.+++
T Consensus 73 ~sStk~d~tIryLsl~dNkylR------------------------------------YF~GH~~~V~sL~--------- 107 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR------------------------------------YFPGHKKRVNSLS--------- 107 (311)
T ss_pred EccCCCCCceEEEEeecCceEE------------------------------------EcCCCCceEEEEE---------
Confidence 6655 6677776655433222 1346777888876
Q ss_pred EEeeCCcEEEEEecCCceeeeeeccccee--cCCCCeEEEEEcCCCCEEEEEeeCCeEEEEecCCC-CceeEEEEeecCC
Q 001567 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWG 301 (1052)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~gh~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~-~~~~~~l~~~~~~ 301 (1052)
.+|-+..+++++.|+++++||....++. ..-....++||.|+|-++|+|.....|++||++.. .++..++...+
T Consensus 108 -~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~-- 184 (311)
T KOG1446|consen 108 -VSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD-- 184 (311)
T ss_pred -ecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC--
Confidence 4777888999999999999999866543 11223338999999999999999889999999874 34555555421
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCc--eeeeeEcCCCCCCccceeeee---eee
Q 001567 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS--ISSPIVKPNQDCKYEPLMSGT---SMM 376 (1052)
Q Consensus 302 ~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~--v~s~~~sp~~~~~~~~l~sg~---~~~ 376 (1052)
+.....+.|.|||||+++..+...+.+.+-|.+.|...+++.++.... --+..|.|++ +++++|+ ++.
T Consensus 185 ---~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds----~Fvl~gs~dg~i~ 257 (311)
T KOG1446|consen 185 ---NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS----KFVLSGSDDGTIH 257 (311)
T ss_pred ---CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC----cEEEEecCCCcEE
Confidence 246678999999999999999999999999999999999998763221 1356789999 9999887 899
Q ss_pred EEecCCceEEEEecC-CcccEEEEec-cceeeeeccCCceeeeEe
Q 001567 377 QWDEYGYRLYAIEEG-SSERVLIFSF-GKCCLNRGVSGMTYARQV 419 (1052)
Q Consensus 377 ~W~~~~~~l~~~~~~-~~~~v~~~s~-~k~~~s~s~d~~v~~w~~ 419 (1052)
+|+.+++..+....+ +...+.++.| -+...-++.+..+..|..
T Consensus 258 vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 258 VWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLP 302 (311)
T ss_pred EEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEec
Confidence 999999998888877 3444444444 233333444556666754
No 99
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.79 E-value=1.3e-16 Score=180.23 Aligned_cols=392 Identities=13% Similarity=0.114 Sum_probs=249.3
Q ss_pred CccceEEEcCCc---cEEEEEeCCcEEEEEEEEecCcee-e-------cCCCCCCCceeeeEeeeeccccccccccceEE
Q 001567 68 GENLQAVWSPDT---KLIAVVTSSLYLHIFKVQITEKSI-Q-------IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS 136 (1052)
Q Consensus 68 G~~~~v~wSPDg---~~Lav~t~dg~l~i~~l~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 136 (1052)
.-+.+++|+.-+ -+||+++.|.+||||++.....-. . .....+.-..+..+.+..+....+.+++.-|.
T Consensus 192 DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~ 271 (764)
T KOG1063|consen 192 DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVY 271 (764)
T ss_pred hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceE
Confidence 446677776644 489999999999999997655211 0 00001111112233344444445567777777
Q ss_pred EEe--ecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEE
Q 001567 137 NIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (1052)
Q Consensus 137 ~i~--~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i 214 (1052)
++. +.+..|+.++.|.++.+ |....+...=.+ ..+ +-.+
T Consensus 272 sv~W~p~~~~LLSASaDksmii--W~pd~~tGiWv~----------------------------~vR---------lGe~ 312 (764)
T KOG1063|consen 272 SVWWHPEGLDLLSASADKSMII--WKPDENTGIWVD----------------------------VVR---------LGEV 312 (764)
T ss_pred EEEEccchhhheecccCcceEE--EecCCccceEEE----------------------------EEE---------eecc
Confidence 765 44456888888988866 554432111000 000 0000
Q ss_pred EecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee------cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCC
Q 001567 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE 287 (1052)
Q Consensus 215 ~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~------~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~ 287 (1052)
..+...-.-+.++|++..+++.+..|..++|.......| .||.+.| .++|+|.|.+|.+.+.|.|-|+|---.
T Consensus 313 gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg 392 (764)
T KOG1063|consen 313 GGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG 392 (764)
T ss_pred cccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccc
Confidence 111111123456788888888888888888874433333 6999999 999999999999999999999987531
Q ss_pred CCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCC----------C-----e------------
Q 001567 288 SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG----------C-----R------------ 340 (1052)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~----------~-----~------------ 340 (1052)
.....+.+...+ -|....+|++|-+....+++|.+.+.+|+++... + .
T Consensus 393 ~q~~wHEiaRPQ-----iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaL 467 (764)
T KOG1063|consen 393 RQQEWHEIARPQ-----IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPAL 467 (764)
T ss_pred cccceeeecccc-----cccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccc
Confidence 111222222211 1777899999998667788888889999997620 0 0
Q ss_pred -----E---------------EE-----------------------------EecccccCceeeeeEcCCCCCCccceee
Q 001567 341 -----L---------------MS-----------------------------TIRQISLSSISSPIVKPNQDCKYEPLMS 371 (1052)
Q Consensus 341 -----l---------------~~-----------------------------tl~~~~~~~v~s~~~sp~~~~~~~~l~s 371 (1052)
. .. .+-|| -..|.+++.+|++ +.++|
T Consensus 468 GLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH-GyEv~~l~~s~~g----nliAS 542 (764)
T KOG1063|consen 468 GLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH-GYEVYALAISPTG----NLIAS 542 (764)
T ss_pred cccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC-ceeEEEEEecCCC----CEEee
Confidence 0 00 00122 3467888999988 78887
Q ss_pred ee--------eeeEEecCCceEEEEecCCcccE--EEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheee
Q 001567 372 GT--------SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (1052)
Q Consensus 372 g~--------~~~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~ 440 (1052)
+. -+++|+..+-.....+.+|+-.| +.|++ ++.++++|.|.+..+|....+... .+.
T Consensus 543 aCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~----------e~~-- 610 (764)
T KOG1063|consen 543 ACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD----------EFR-- 610 (764)
T ss_pred hhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccch----------hhh--
Confidence 65 57889887766666778899888 56666 999999999999999987432220 000
Q ss_pred eeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecC-ccceeeeEEEEEEEe-------CCEEEE
Q 001567 441 HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWL-------GKIIVV 511 (1052)
Q Consensus 441 ~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~-~~~e~~~~v~gl~W~-------~~~li~ 511 (1052)
-.....|.--|..+.|+||+.++||||+|.++ +|.....+=+.... ....-+..|+.+.|. .+.+.+
T Consensus 611 ----fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vav 686 (764)
T KOG1063|consen 611 ----FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAV 686 (764)
T ss_pred ----hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEE
Confidence 11245788889999999999999999999999 99988764222111 111112235566664 123334
Q ss_pred EEEecCCCeEEEEEeeCC
Q 001567 512 CNYIDSSNTYELLFYPRY 529 (1052)
Q Consensus 512 ~~~~~~~~~~elrly~~~ 529 (1052)
| ....+|.+|.++
T Consensus 687 G-----le~GeI~l~~~~ 699 (764)
T KOG1063|consen 687 G-----LEKGEIVLWRRK 699 (764)
T ss_pred E-----ecccEEEEEecc
Confidence 4 345789999875
No 100
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.77 E-value=7.2e-17 Score=173.49 Aligned_cols=230 Identities=13% Similarity=0.150 Sum_probs=192.5
Q ss_pred eeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCC
Q 001567 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (1052)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~ 302 (1052)
.+.....++++.|.++-+.|....+.+ .||...+ .+.++|+...+++++.|..|+||.+.. .+.......
T Consensus 228 ~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~~~~~----- 301 (506)
T KOG0289|consen 228 IPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPTSSRP----- 301 (506)
T ss_pred cCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCcccccc-----
Confidence 444567889999989888888766543 8999999 999999999999999999999999876 444444444
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEeccc-ccCceeeeeEcCCCCCCccceeeee---eeeEE
Q 001567 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQW 378 (1052)
Q Consensus 303 ~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~-~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W 378 (1052)
|.++|+.+.-.|.|.||.+++.|+++..-|..++..++..... ..-.+++.+|+||| -.+.+|. .+++|
T Consensus 302 ---h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg----Lifgtgt~d~~vkiw 374 (506)
T KOG0289|consen 302 ---HEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG----LIFGTGTPDGVVKIW 374 (506)
T ss_pred ---ccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc----eEEeccCCCceEEEE
Confidence 9999999999999999999999999999999999887765542 13458999999999 8888886 89999
Q ss_pred ecCCceEEEEecCCcccEEEEec---cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcE
Q 001567 379 DEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (1052)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V 455 (1052)
+.....-...+.+|...|..++| |-.+++++.|+.+++||++.... .+.-......+|
T Consensus 375 dlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-------------------~kt~~l~~~~~v 435 (506)
T KOG0289|consen 375 DLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-------------------FKTIQLDEKKEV 435 (506)
T ss_pred EcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-------------------cceeeccccccc
Confidence 99988888888999999987777 77999999999999999987554 122122334479
Q ss_pred EEEEEccCCCEEEEEeCCceE-EEEccCCcEEEe
Q 001567 456 QHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (1052)
Q Consensus 456 ~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f 488 (1052)
.+++|++.|+||+++|.+=.+ +++-.++.|...
T Consensus 436 ~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 436 NSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred eeEEEcCCCCeEEeecceeEEEEEecccccceee
Confidence 999999999999999999999 999889999864
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.76 E-value=4.2e-18 Score=182.10 Aligned_cols=216 Identities=17% Similarity=0.183 Sum_probs=172.0
Q ss_pred eeCCcEEEEEecCCceeeeeecccce---ecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCC
Q 001567 227 YSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (1052)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~~~~---~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~ 302 (1052)
.++++.++..++|+..++|+....+. +.||++-| ++.|......+++|+.|.+|++||+.. ..+.++.-.
T Consensus 228 d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-~~C~kt~l~----- 301 (459)
T KOG0288|consen 228 DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-AYCSKTVLP----- 301 (459)
T ss_pred cCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-hheeccccc-----
Confidence 57888888889999999999876543 37999999 888887776799999999999999987 666655432
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEe
Q 001567 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (1052)
Q Consensus 303 ~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~ 379 (1052)
...+..|.-+ +..++||-.|++|+.||..+..+..+...+ +.|+++..++++ ..+.+.+ ++.+.+
T Consensus 302 ----~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--g~vtSl~ls~~g----~~lLsssRDdtl~viD 369 (459)
T KOG0288|consen 302 ----GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG--GRVTSLDLSMDG----LELLSSSRDDTLKVID 369 (459)
T ss_pred ----cccccceEec--ceeeeecccccceEEEeccCCceeeEeecC--cceeeEeeccCC----eEEeeecCCCceeeee
Confidence 3456666666 678899999999999999999988888877 479999999998 5555555 788899
Q ss_pred cCCceEEEEecC------CcccEEEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCC
Q 001567 380 EYGYRLYAIEEG------SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (1052)
Q Consensus 380 ~~~~~l~~~~~~------~~~~v~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~ 452 (1052)
..++++..+... |+-.-.+|+| +.++++||.||++++|++.+++....+. ....+
T Consensus 370 lRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~------------------~s~s~ 431 (459)
T KOG0288|consen 370 LRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS------------------LSTSN 431 (459)
T ss_pred cccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEec------------------cCCCC
Confidence 888887776543 3333388999 8899999999999999998877532111 11122
Q ss_pred CcEEEEEEccCCCEEEEEeCCceE-EE
Q 001567 453 WPVQHVAASKDGMFLAVAGLHGLI-LY 478 (1052)
Q Consensus 453 ~~V~~va~SpdG~~lavag~dG~i-lw 478 (1052)
..|.+++|+|.|.+++++++++.+ +|
T Consensus 432 ~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 432 AAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cceEEEEEcCCCchhhcccCCcceEec
Confidence 259999999999999999999998 88
No 102
>PTZ00420 coronin; Provisional
Probab=99.76 E-value=2.1e-16 Score=187.06 Aligned_cols=216 Identities=12% Similarity=0.108 Sum_probs=158.9
Q ss_pred cCCCccEEEEEecCCcceEEEEeeC-CcEEEEEecCCceeeeeecccc-----------eecCCCCeE-EEEEcCCCCE-
Q 001567 205 FPISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKID-----------KELGSGDAV-CASIAPEQQI- 270 (1052)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~d-G~~~~~~~~d~~i~~w~~~~~~-----------~~~gh~~~v-~va~spd~~~- 270 (1052)
.+|...|.+++| +|+ +.++++++.|+++++|+..... .+.+|.+.| +++|+|++..
T Consensus 71 ~gH~~~V~~laf----------sP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~i 140 (568)
T PTZ00420 71 KGHTSSILDLQF----------NPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYI 140 (568)
T ss_pred cCCCCCEEEEEE----------cCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeE
Confidence 456677877765 565 7899999999999999986431 236899999 9999999875
Q ss_pred EEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEeccccc
Q 001567 271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL 350 (1052)
Q Consensus 271 lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~ 350 (1052)
+|+|+.||+|+|||+.+ ++....+. |.+.|.+++|+|||..|++++.|+.|+|||+.++..+.++.+| .
T Consensus 141 LaSgS~DgtIrIWDl~t-g~~~~~i~---------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH-~ 209 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIEN-EKRAFQIN---------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH-D 209 (568)
T ss_pred EEEEeCCCeEEEEECCC-CcEEEEEe---------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc-c
Confidence 57999999999999987 65554443 5678999999999999999999999999999999988899887 4
Q ss_pred Cceee-----eeEcCCCCCCccceeeee-------eeeEEecCC-ceEEEEec--CCcccEE-EEec--cceeeeeccCC
Q 001567 351 SSISS-----PIVKPNQDCKYEPLMSGT-------SMMQWDEYG-YRLYAIEE--GSSERVL-IFSF--GKCCLNRGVSG 412 (1052)
Q Consensus 351 ~~v~s-----~~~sp~~~~~~~~l~sg~-------~~~~W~~~~-~~l~~~~~--~~~~~v~-~~s~--~k~~~s~s~d~ 412 (1052)
+.+.+ ..|++++ ..+++++ ++++|+... .+.+.... .+...+. .++. +..+++|+.|+
T Consensus 210 g~~~s~~v~~~~fs~d~----~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDD----NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred CCceeEEEEeeeEcCCC----CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 43332 2345665 6666543 489999874 44444332 2223332 2222 67888999999
Q ss_pred ceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCC
Q 001567 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (1052)
Q Consensus 413 ~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG 464 (1052)
++++|++..+... ....|. +..|++.++|.|..
T Consensus 286 tIr~~e~~~~~~~------------------~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 286 NCRYYQHSLGSIR------------------KVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred eEEEEEccCCcEE------------------eecccc-cCCCccceEEcccc
Confidence 9999998654221 122333 66789999999864
No 103
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=9.5e-17 Score=174.21 Aligned_cols=265 Identities=15% Similarity=0.207 Sum_probs=196.5
Q ss_pred ceEEEEeeCCcEEEEEecCCceeeeeeccccee---------------------cCCCCeE-EEEEcCCCCEEEEEeeCC
Q 001567 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---------------------LGSGDAV-CASIAPEQQILAVGTRRG 278 (1052)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---------------------~gh~~~v-~va~spd~~~lAsgs~Dg 278 (1052)
..++++++|+++.++++.++++.-|+..+++.. .+|.+-+ |+++|+||++||+|+.|.
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~ 224 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR 224 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence 345778999999999999999988876544311 2677778 999999999999999999
Q ss_pred eEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeE
Q 001567 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (1052)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~ 358 (1052)
.|.||+.++ .++++++++ |.+.|.+++|--.-..|.+++.|+++++|++.....+.++-|| .+.|.++..
T Consensus 225 ~v~Iw~~~t-~ehv~~~~g--------hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH-qd~v~~Ida 294 (479)
T KOG0299|consen 225 HVQIWDCDT-LEHVKVFKG--------HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH-QDGVLGIDA 294 (479)
T ss_pred eEEEecCcc-cchhhcccc--------cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC-ccceeeech
Confidence 999999998 888888888 9999999999988889999999999999999888888888888 667777655
Q ss_pred cCCCCCCccceeeee---eeeEEecCC-ceEEEEecCCcccEEEEec--cceeeeeccCCceeeeEeeecCceEEEEecC
Q 001567 359 KPNQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 432 (1052)
Q Consensus 359 sp~~~~~~~~l~sg~---~~~~W~~~~-~~l~~~~~~~~~~v~~~s~--~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~ 432 (1052)
..-+ ..+..|. ++++|.+.. .+++. .++.+.+-+..| ...+++||.+|+|.+|.+....- ++++.-.
T Consensus 295 L~re----R~vtVGgrDrT~rlwKi~eesqlif--rg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp-lf~~~~A 367 (479)
T KOG0299|consen 295 LSRE----RCVTVGGRDRTVRLWKIPEESQLIF--RGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP-LFTSRLA 367 (479)
T ss_pred hccc----ceEEeccccceeEEEeccccceeee--eCCCCCeeeEEEecccceeeccCCceEEEeeecccCc-eeEeecc
Confidence 4432 3333332 999999743 33333 456667766666 67889999999999999876443 3322211
Q ss_pred CcchheeeeeccCc-ccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeE--EEEEEEe--C
Q 001567 433 DTDELKILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ--SKGLLWL--G 506 (1052)
Q Consensus 433 ~~~~~~w~~~~~p~-~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~--v~gl~W~--~ 506 (1052)
. ...|. .-.+++..|++++..|...++|+|+.+|.+ +|-+..+-= .+ +...+-.+. |.+++|. +
T Consensus 368 H--------gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r-~i-~~l~~ls~~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 368 H--------GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR-AI-NLLYSLSLVGFVNSLAFSNSG 437 (479)
T ss_pred c--------cccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc-cc-ceeeecccccEEEEEEEccCC
Confidence 0 00111 122344579999999999999999999999 999988721 11 111222233 4567774 5
Q ss_pred CEEEEE
Q 001567 507 KIIVVC 512 (1052)
Q Consensus 507 ~~li~~ 512 (1052)
+.++++
T Consensus 438 k~ivag 443 (479)
T KOG0299|consen 438 KRIVAG 443 (479)
T ss_pred CEEEEe
Confidence 667776
No 104
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=7.6e-17 Score=167.29 Aligned_cols=241 Identities=12% Similarity=0.227 Sum_probs=172.0
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCC--EEEEEEcCCc
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRG 330 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~--~Lasg~~Dg~ 330 (1052)
..|..++ |+|++ ++++|+|+.|-+|+|||+.. ...+..+-. |+|.|+++.|+|+-. .|.+|++||.
T Consensus 40 ~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k-~~qlg~ll~--------HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 40 SAHAGSITALAVS--GPYVASGSSDETIHIYDMRK-RKQLGILLS--------HAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred cccccceeEEEec--ceeEeccCCCCcEEEEeccc-hhhhcceec--------cccceEEEEecCCcchhheeeecCCCc
Confidence 5788888 88875 78999999999999999987 555666655 999999999999865 9999999999
Q ss_pred EEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeeeeeeEEecCCceEEEEecCCcccEEEEeccceeeeecc
Q 001567 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGV 410 (1052)
Q Consensus 331 v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~ 410 (1052)
|.+|++..-.++.++++| ...|+.++++|.+ |..++.+.
T Consensus 109 i~iw~~~~W~~~~slK~H-~~~Vt~lsiHPS~----------------------------------------KLALsVg~ 147 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAH-KGQVTDLSIHPSG----------------------------------------KLALSVGG 147 (362)
T ss_pred EEEEEcCCeEEeeeeccc-ccccceeEecCCC----------------------------------------ceEEEEcC
Confidence 999999998999999998 6668888888875 33446677
Q ss_pred CCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceEEEEccCCcEEEecC
Q 001567 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGD 490 (1052)
Q Consensus 411 d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~ilwd~~s~~w~~f~~ 490 (1052)
|+.++.|++..|.... ..-+++.. ..+.|+|.|.+++++++++.-+|.+.+-+ +|..
T Consensus 148 D~~lr~WNLV~Gr~a~-------------------v~~L~~~a--t~v~w~~~Gd~F~v~~~~~i~i~q~d~A~--v~~~ 204 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAF-------------------VLNLKNKA--TLVSWSPQGDHFVVSGRNKIDIYQLDNAS--VFRE 204 (362)
T ss_pred CceeeeehhhcCccce-------------------eeccCCcc--eeeEEcCCCCEEEEEeccEEEEEecccHh--Hhhh
Confidence 8888888887766521 01112222 22999999999999999997799887653 3433
Q ss_pred ccceeeeEEEEEEE-eCCEEEEEEEecCCCeEEEEEeeCCC-CCCc-ceeEEeecCCccEEEEeeCCEEEEEEcCCeEEE
Q 001567 491 ITQEQKIQSKGLLW-LGKIIVVCNYIDSSNTYELLFYPRYH-LDQS-SLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHI 567 (1052)
Q Consensus 491 ~~~e~~~~v~gl~W-~~~~li~~~~~~~~~~~elrly~~~~-ld~~-~~l~~~~~~~~~~~~s~~~~~llv~~~d~~i~l 567 (1052)
...+ .....+.| .+..+++| ..+..+++++.+. .--. ...+.-.+..-....++++.+|+.+++||.|++
T Consensus 205 i~~~--~r~l~~~~l~~~~L~vG-----~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 205 IENP--KRILCATFLDGSELLVG-----GDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred hhcc--ccceeeeecCCceEEEe-----cCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEE
Confidence 2222 22344556 46788887 3346788887752 1111 112111222211223445557777999999999
Q ss_pred EEEEEeccc
Q 001567 568 FHVKLFGEL 576 (1052)
Q Consensus 568 ~~~~~~~~~ 576 (1052)
|++.++.+.
T Consensus 278 Wd~~~~~k~ 286 (362)
T KOG0294|consen 278 WDIDMETKK 286 (362)
T ss_pred EEccccccC
Confidence 999987554
No 105
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.5e-15 Score=158.58 Aligned_cols=275 Identities=15% Similarity=0.197 Sum_probs=198.9
Q ss_pred ceEEEEeeCCeEEEEEc-CCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeC--CcEEEEEEEEe
Q 001567 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS--SLYLHIFKVQI 98 (1052)
Q Consensus 22 ~~vv~fSpdg~llA~~s-d~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~--dg~l~i~~l~~ 98 (1052)
-.-+.|+++|.++++++ |++++|+|.. .+.++.... + .++|. -.++|-.....+.-+++ |.+||.-++..
T Consensus 17 i~sl~fs~~G~~litss~dDsl~LYd~~-~g~~~~ti~----s-kkyG~-~~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 17 INSLDFSDDGLLLITSSEDDSLRLYDSL-SGKQVKTIN----S-KKYGV-DLACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred eeEEEecCCCCEEEEecCCCeEEEEEcC-CCceeeEee----c-ccccc-cEEEEecCCceEEEccCCCCCceEEEEeec
Confidence 44588999999888875 6699999995 655544432 1 23453 47888887777777776 77899999876
Q ss_pred cCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCcc
Q 001567 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (1052)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~ 178 (1052)
.+-..|+.||... +. -.+++|.++.++.++-|.+|+. ||-.......
T Consensus 90 NkylRYF~GH~~~---V~------------------sL~~sP~~d~FlS~S~D~tvrL--WDlR~~~cqg---------- 136 (311)
T KOG1446|consen 90 NKYLRYFPGHKKR---VN------------------SLSVSPKDDTFLSSSLDKTVRL--WDLRVKKCQG---------- 136 (311)
T ss_pred CceEEEcCCCCce---EE------------------EEEecCCCCeEEecccCCeEEe--eEecCCCCce----------
Confidence 5544455555421 11 1245566788999999999988 5533222110
Q ss_pred ceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee-----
Q 001567 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----- 253 (1052)
Q Consensus 179 i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~----- 253 (1052)
+ .......++++.|+|-++|++.+...|+++|...-.+-
T Consensus 137 --------------------------------~----l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf 180 (311)
T KOG1446|consen 137 --------------------------------L----LNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTF 180 (311)
T ss_pred --------------------------------E----EecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeE
Confidence 0 00112234678899999999888888999988753221
Q ss_pred ----cCCCCeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCC-eeEEEECCCCCEEEEEEcC
Q 001567 254 ----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP-VSCIAWTPDNSAFAVGWKS 328 (1052)
Q Consensus 254 ----~gh~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~-V~~l~~SpDg~~Lasg~~D 328 (1052)
..+.....+.|||||+.|..+..++.+.+-|.=+ |..+.++.+..- .+. -.+.+|+|||+++.+|+.|
T Consensus 181 ~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~------~~~~~~~a~ftPds~Fvl~gs~d 253 (311)
T KOG1446|consen 181 SITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD-GTVKSTFSGYPN------AGNLPLSATFTPDSKFVLSGSDD 253 (311)
T ss_pred ccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-CcEeeeEeeccC------CCCcceeEEECCCCcEEEEecCC
Confidence 1244455999999999999999999999999877 777888877221 111 1577899999999999999
Q ss_pred CcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee-eeeEEecCCc
Q 001567 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGY 383 (1052)
Q Consensus 329 g~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~~ 383 (1052)
|+|.+|++.++..+..+++.....++++.|.|.- .+++|++ .+.+|-+...
T Consensus 254 g~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~----~mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 254 GTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY----AMFVSASSNLVFWLPDED 305 (311)
T ss_pred CcEEEEEcCCCcEeeEecCCCCCCccccccCCce----eeeeecCceEEEEecccc
Confidence 9999999999999999998547789999999876 6777776 7788987644
No 106
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.6e-15 Score=149.92 Aligned_cols=299 Identities=11% Similarity=0.082 Sum_probs=204.2
Q ss_pred ccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEE--eecCCeEE
Q 001567 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHML 146 (1052)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~d~~~ll 146 (1052)
.+.+|+|.|.|..-|+++...+++|-....-.+ ...+|+.+.++ +++... .-+.+.++|.|. +++++.++
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~--~r~~hea~~~p-p~v~~k-----r~khhkgsiyc~~ws~~gelia 105 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALID--LRHAHEAAKQP-PSVLCK-----RNKHHKGSIYCTAWSPCGELIA 105 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccC--cccccccccCC-CeEEee-----eccccCccEEEEEecCccCeEE
Confidence 456899999999999999999999876532111 01122211110 112111 123455666555 56778888
Q ss_pred EEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEE
Q 001567 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1052)
Q Consensus 147 v~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (1052)
.|+.|..|..+.++.++.....- ...+.-+++.|++++|-...
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~-------------------------------dle~nmhdgtirdl~fld~~------ 148 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGH-------------------------------DLEFNMHDGTIRDLAFLDDP------ 148 (350)
T ss_pred ecCCCceEEEEecccccccccCc-------------------------------ceeeeecCCceeeeEEecCC------
Confidence 88999999999888776443210 01233467788888872221
Q ss_pred eeCCcEEEEEe-cCCceeeeeeccccee---cCCCCeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCC
Q 001567 227 YSNGQLMSCSV-SKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (1052)
Q Consensus 227 s~dG~~~~~~~-~d~~i~~w~~~~~~~~---~gh~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~ 302 (1052)
.+.|.++++++ .|..|-+-|...++.+ .||++-+-.-++-++-.+|+|++|.+||.||++- ..++.++.....+
T Consensus 149 ~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~- 226 (350)
T KOG0641|consen 149 ESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDFHD- 226 (350)
T ss_pred CcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeec-cceeeeccCcccC-
Confidence 12344444433 3444444455554433 6888888445666788999999999999999987 6777766542110
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEe
Q 001567 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (1052)
Q Consensus 303 ~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~ 379 (1052)
.--....|.+++..|.|++||+|-.|....++|+.|++.++.+..| ...|.++.|+|.. .++.+++ ++++=+
T Consensus 227 ~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph-sadir~vrfsp~a----~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 227 GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH-SADIRCVRFSPGA----HYLLTCSYDMKIKLTD 301 (350)
T ss_pred CCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC-ccceeEEEeCCCc----eEEEEecccceEEEee
Confidence 0002356999999999999999999999999999999999999888 7899999999988 8888888 777777
Q ss_pred cCCc---e-EEEEecCCcccEEEEec---cceeeeeccCCceeeeEe
Q 001567 380 EYGY---R-LYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQV 419 (1052)
Q Consensus 380 ~~~~---~-l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~ 419 (1052)
..+. + .+++...|.+.+++..+ .-+.++.+.|.+..+|.+
T Consensus 302 lqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 302 LQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred cccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 7653 2 23444567777766555 336678899999999975
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.74 E-value=1.6e-16 Score=170.87 Aligned_cols=216 Identities=17% Similarity=0.230 Sum_probs=173.1
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCe
Q 001567 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (1052)
Q Consensus 261 ~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~ 340 (1052)
.+...|....+.+|+.|.++.++|... ++.+.++++ |+..|+.+.|+|+...+++++.|..|+||++....
T Consensus 224 ald~~~s~~~ilTGG~d~~av~~d~~s-~q~l~~~~G--------h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 224 ALDIIPSSSKILTGGEDKTAVLFDKPS-NQILATLKG--------HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred EEeecCCCCcceecCCCCceEEEecch-hhhhhhccC--------cceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence 777888888999999999999999987 888888998 99999999999999999999999999999998877
Q ss_pred EEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCccc--E--EEEec-cceeeeeccCC
Q 001567 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSER--V--LIFSF-GKCCLNRGVSG 412 (1052)
Q Consensus 341 l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~--v--~~~s~-~k~~~s~s~d~ 412 (1052)
.....+.| ...|+.+..+|.+ +++++.+ ++.+-+..++..+......... + .+|.+ |-.+.+|..|+
T Consensus 295 ~~~~~~~h-~~~V~~ls~h~tg----eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~ 369 (506)
T KOG0289|consen 295 EPTSSRPH-EEPVTGLSLHPTG----EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDG 369 (506)
T ss_pred Cccccccc-cccceeeeeccCC----cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCc
Confidence 66677777 8899999999999 9999888 4445566666666554332233 3 56666 77888999999
Q ss_pred ceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCc
Q 001567 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDI 491 (1052)
Q Consensus 413 ~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~ 491 (1052)
.+++|++..+.. ...|-+|.+||+.++|+.+|-|||++..||.+ +||++.-+ .|...
T Consensus 370 ~vkiwdlks~~~--------------------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--n~kt~ 427 (506)
T KOG0289|consen 370 VVKIWDLKSQTN--------------------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK--NFKTI 427 (506)
T ss_pred eEEEEEcCCccc--------------------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc--cccee
Confidence 999999877665 56788999999999999999999999999988 99996543 34332
Q ss_pred cceeeeEEEE--EEEeCCEEEEE
Q 001567 492 TQEQKIQSKG--LLWLGKIIVVC 512 (1052)
Q Consensus 492 ~~e~~~~v~g--l~W~~~~li~~ 512 (1052)
.-+....+.. +.-.|.+++++
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred eccccccceeEEEcCCCCeEEee
Confidence 2222123443 44457888876
No 108
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.74 E-value=5.2e-16 Score=160.30 Aligned_cols=239 Identities=16% Similarity=0.284 Sum_probs=171.7
Q ss_pred CCCeE-EEEEcC-CCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEE
Q 001567 256 SGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (1052)
Q Consensus 256 h~~~v-~va~sp-d~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~v 333 (1052)
-++.| +++||| ...+++.||.||+||+|+++..+....+... .|.++|.+++|+-||..+++|+.|+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~-------~~~~PvL~v~WsddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ-------SHDGPVLDVCWSDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhh-------ccCCCeEEEEEccCCceEEeeccCCceEE
Confidence 36888 999999 5667889999999999999875554442221 39999999999999999999999999999
Q ss_pred EEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccEEEEec-cceeeeec
Q 001567 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRG 409 (1052)
Q Consensus 334 Wd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s 409 (1052)
||+.+++ ..+...| ..+|..++|-+.. ..+.+++|+ ++++||......+.+..- .+++++.+. -..++-+.
T Consensus 99 wDL~S~Q-~~~v~~H-d~pvkt~~wv~~~--~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~~pm~vVat 173 (347)
T KOG0647|consen 99 WDLASGQ-VSQVAAH-DAPVKTCHWVPGM--NYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVLYPMAVVAT 173 (347)
T ss_pred EEccCCC-eeeeeec-ccceeEEEEecCC--CcceeEecccccceeecccCCCCeeeeeec-cceeeehhccCceeEEEe
Confidence 9999985 4455556 7889999987765 357899999 999999998888777644 567888777 33444555
Q ss_pred cCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCc---E
Q 001567 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK---W 485 (1052)
Q Consensus 410 ~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~---w 485 (1052)
.+..+.++.+..+... . +..+- .-++.+|+++.-+|++-.|.|+-.|.+ +..+..+. -
T Consensus 174 a~r~i~vynL~n~~te-----------~--k~~~S-----pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 174 AERHIAVYNLENPPTE-----------F--KRIES-----PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN 235 (347)
T ss_pred cCCcEEEEEcCCCcch-----------h--hhhcC-----cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc
Confidence 5666666665433221 0 00111 135679999999999888999999999 98887741 1
Q ss_pred EEe---cCcc--ceeeeEEEEEEEe--CCEEEEEEEecCCCeEEEEEeeCC
Q 001567 486 RVF---GDIT--QEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (1052)
Q Consensus 486 ~~f---~~~~--~e~~~~v~gl~W~--~~~li~~~~~~~~~~~elrly~~~ 529 (1052)
..| .+.. ...-+.|.+++.+ .+.++++ +.+...-+|+.+
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTa-----GsDGtf~FWDkd 281 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTA-----GSDGTFSFWDKD 281 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEeecccceEEEe-----cCCceEEEecch
Confidence 122 2111 1112446666665 4456655 455778899885
No 109
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.74 E-value=6.6e-17 Score=175.83 Aligned_cols=229 Identities=18% Similarity=0.210 Sum_probs=175.3
Q ss_pred cCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee-----cCCCCeE-EEEEcCCCCEEEEEeeCC
Q 001567 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQQILAVGTRRG 278 (1052)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-----~gh~~~v-~va~spd~~~lAsgs~Dg 278 (1052)
...+.+|+++. ++|||+.+++|+.-.++.+||...+... ....-+. .+++|||.++..+++.||
T Consensus 462 l~rdnyiRSck----------L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdG 531 (705)
T KOG0639|consen 462 LNRDNYIRSCK----------LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDG 531 (705)
T ss_pred cCcccceeeeE----------ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCC
Confidence 34556676644 6899999999999999999998765432 1112334 789999999999999999
Q ss_pred eEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeE
Q 001567 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (1052)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~ 358 (1052)
.|+|||+.+ ...++.+++ |+..+.||..|+||..|-+|+-|++|+.||+..++.+.... . .+.|.++-.
T Consensus 532 nI~vwDLhn-q~~VrqfqG--------htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F-~SQIfSLg~ 600 (705)
T KOG0639|consen 532 NIAVWDLHN-QTLVRQFQG--------HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-F-SSQIFSLGY 600 (705)
T ss_pred cEEEEEccc-ceeeecccC--------CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-h-hhhheeccc
Confidence 999999998 888999998 99999999999999999999999999999998876443322 1 356777778
Q ss_pred cCCCCCCccceeeee-eeeEEecC--CceEEEEecCCcccEEEEec---cceeeeeccCCceeeeEeeecCceEEEEecC
Q 001567 359 KPNQDCKYEPLMSGT-SMMQWDEY--GYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE 432 (1052)
Q Consensus 359 sp~~~~~~~~l~sg~-~~~~W~~~--~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~ 432 (1052)
+|.+ +-++-|- ...+|-.. +.+-.. ..-|...|+.+.| |+..++.+.|.....|..-+|..-
T Consensus 601 cP~~----dWlavGMens~vevlh~skp~kyq-lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi------- 668 (705)
T KOG0639|consen 601 CPTG----DWLAVGMENSNVEVLHTSKPEKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI------- 668 (705)
T ss_pred CCCc----cceeeecccCcEEEEecCCcccee-ecccccEEEEEEecccCceeeecCchhhhhhccCccccce-------
Confidence 8887 6666553 33344321 111111 2346777866666 999999999999999988777651
Q ss_pred CcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEc
Q 001567 433 DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1052)
Q Consensus 433 ~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~ 480 (1052)
.. ...+.+|.++.+|.|.+|+++|+.|..+ +|.+
T Consensus 669 -------------Fq-skE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 669 -------------FQ-SKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -------------ee-ccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 11 1235689999999999999999999888 8875
No 110
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.4e-16 Score=159.82 Aligned_cols=236 Identities=19% Similarity=0.172 Sum_probs=174.5
Q ss_pred CCcEEEEEecCCceeeeeecccce------ecCCCCeE-EEEEcC--CCCEEEEEeeCCeEEEEecCCCCce--eEEEEe
Q 001567 229 NGQLMSCSVSKKGLKLAEFIKIDK------ELGSGDAV-CASIAP--EQQILAVGTRRGVVELYDLAESASL--IRTVSL 297 (1052)
Q Consensus 229 dG~~~~~~~~d~~i~~w~~~~~~~------~~gh~~~v-~va~sp--d~~~lAsgs~Dg~V~vwd~~~~~~~--~~~l~~ 297 (1052)
-|+.+++++.|+++++........ +.||.++| -++|.+ -|.+||+++.||.|.||.-.. ++- ......
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~-g~w~k~~e~~~ 100 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN-GRWTKAYEHAA 100 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC-Cchhhhhhhhh
Confidence 388999999999999987764432 37999999 999876 699999999999999999765 432 222233
Q ss_pred ecCCCCCCCCCCeeEEEECCC--CCEEEEEEcCCcEEEEEcCCC--eEEEEecccccCceeeeeEcCCCCC---------
Q 001567 298 YDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQDC--------- 364 (1052)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~SpD--g~~Lasg~~Dg~v~vWd~~~~--~l~~tl~~~~~~~v~s~~~sp~~~~--------- 364 (1052)
|.+.|++|+|.|. |-.||+|+.||.|+|.+..+. -....+...|.-.|+++.+.|....
T Consensus 101 --------h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~ 172 (299)
T KOG1332|consen 101 --------HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPA 172 (299)
T ss_pred --------hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcc
Confidence 9999999999996 559999999999999988543 2233333333677999999887321
Q ss_pred -Cccceeeee---eeeEEecCCc--eEEEEecCCcccE--EEEec-----cceeeeeccCCceeeeEeeecCceEEEEec
Q 001567 365 -KYEPLMSGT---SMMQWDEYGY--RLYAIEEGSSERV--LIFSF-----GKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (1052)
Q Consensus 365 -~~~~l~sg~---~~~~W~~~~~--~l~~~~~~~~~~v--~~~s~-----~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~ 431 (1052)
+-..++||. .+++|..+.+ .+-.++.+|.+-| ++..| ...++++|.|+++.+|... .+.
T Consensus 173 ~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~-~e~------- 244 (299)
T KOG1332|consen 173 AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD-EEY------- 244 (299)
T ss_pred cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec-Ccc-------
Confidence 114478877 8999988765 3334467898887 44444 3478999999999999865 221
Q ss_pred CCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEcc-CCcEEEecC
Q 001567 432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-QKKWRVFGD 490 (1052)
Q Consensus 432 ~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~-s~~w~~f~~ 490 (1052)
..|+ +..+.....++..++||..|..||+++.|..+ +|.-+ .|+|+..+.
T Consensus 245 -----e~wk----~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 245 -----EPWK----KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred -----Cccc----ccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEccc
Confidence 0121 11222345679999999999999999999999 99754 568987654
No 111
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.73 E-value=1.6e-16 Score=179.81 Aligned_cols=246 Identities=15% Similarity=0.165 Sum_probs=193.6
Q ss_pred eCCcEEEEEecCCceeeeeeccccee-----cCCCCeE-E-EEEcC-CCCEEEEEeeCCeEEEEecCCCCceeEEEEeec
Q 001567 228 SNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-C-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1052)
Q Consensus 228 ~dG~~~~~~~~d~~i~~w~~~~~~~~-----~gh~~~v-~-va~sp-d~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (1052)
.++-.++.++.|+++++|+-...+.. .+|.+.+ + +++-+ ++-.+.+|+.|++|.+|.... ..++.++++
T Consensus 23 ~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~-~~P~~~Lkg-- 99 (745)
T KOG0301|consen 23 TDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ-AEPLYTLKG-- 99 (745)
T ss_pred cCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC-CCchhhhhc--
Confidence 45557888899999999986543221 4566777 4 66664 555699999999999999987 888999998
Q ss_pred CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eee
Q 001567 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (1052)
Q Consensus 300 ~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~ 376 (1052)
|...|.|++--.++. ++|||.|.+++||-.. ++..++.+| +..|.++++-|.+ .++||+ +++
T Consensus 100 ------H~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH-~asVWAv~~l~e~-----~~vTgsaDKtIk 164 (745)
T KOG0301|consen 100 ------HKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGH-TASVWAVASLPEN-----TYVTGSADKTIK 164 (745)
T ss_pred ------cccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCc-chheeeeeecCCC-----cEEeccCcceee
Confidence 999999999888888 9999999999999874 456678888 8899999998874 666776 899
Q ss_pred EEecCCceEEEEecCCcccEEEEec--cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCc
Q 001567 377 QWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (1052)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~s~--~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~ 454 (1052)
+|. +++++.++.||.+.|..+.. ...++|++.||.++.|++ .|+. ..++.+|..-
T Consensus 165 lWk--~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~--------------------l~~~~ghtn~ 221 (745)
T KOG0301|consen 165 LWK--GGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEV--------------------LLEMHGHTNF 221 (745)
T ss_pred ecc--CCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCce--------------------eeeeeccceE
Confidence 997 47899999999999965555 558899999999999997 3333 5677899999
Q ss_pred EEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeE-----EEE-EEEeCCEEEEEEEecCCCeEEEEEee
Q 001567 455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ-----SKG-LLWLGKIIVVCNYIDSSNTYELLFYP 527 (1052)
Q Consensus 455 V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~-----v~g-l~W~~~~li~~~~~~~~~~~elrly~ 527 (1052)
|.+++...+++.++++|+|+++ +|+.. ...|.+. +.. -+|.++-+++|| .+.-+|+|.
T Consensus 222 vYsis~~~~~~~Ivs~gEDrtlriW~~~----------e~~q~I~lPttsiWsa~~L~NgDIvvg~-----SDG~VrVfT 286 (745)
T KOG0301|consen 222 VYSISMALSDGLIVSTGEDRTLRIWKKD----------ECVQVITLPTTSIWSAKVLLNGDIVVGG-----SDGRVRVFT 286 (745)
T ss_pred EEEEEecCCCCeEEEecCCceEEEeecC----------ceEEEEecCccceEEEEEeeCCCEEEec-----cCceEEEEE
Confidence 9999999999999999999999 99864 1122222 222 344355566663 446789987
Q ss_pred CC
Q 001567 528 RY 529 (1052)
Q Consensus 528 ~~ 529 (1052)
.+
T Consensus 287 ~~ 288 (745)
T KOG0301|consen 287 VD 288 (745)
T ss_pred ec
Confidence 63
No 112
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=1.9e-16 Score=164.59 Aligned_cols=219 Identities=15% Similarity=0.163 Sum_probs=165.8
Q ss_pred eCCcEEEEEecCCceeeeeeccccee-----cCCC----CeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEee
Q 001567 228 SNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSG----DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1052)
Q Consensus 228 ~dG~~~~~~~~d~~i~~w~~~~~~~~-----~gh~----~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~ 298 (1052)
|+-.++++.+.+..|++||..+++.. .+|. .+.|++|||||..|..|. ..+|++||+..+++.-......
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhh
Confidence 66677888888999999999887654 2333 445999999999998865 5689999995545322111110
Q ss_pred cCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee----
Q 001567 299 DWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---- 373 (1052)
Q Consensus 299 ~~~~~~~h~g~V~~l~~Sp-Dg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---- 373 (1052)
.. -..+..|-+.|++||| |.+.+|+|+.-..+-|+.-.++.++..+.+| .+.|+.+.|.++| +.+.+|+
T Consensus 200 ~~-~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvThL~~~edG----n~lfsGaRk~d 273 (406)
T KOG2919|consen 200 TK-GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTHLQWCEDG----NKLFSGARKDD 273 (406)
T ss_pred hc-ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeeeEEeccCc----CeecccccCCC
Confidence 00 0012578899999999 6679999999999999999999999999888 7889999999999 7888887
Q ss_pred eeeEEecCCce-EEEEecCCc----ccE-EEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCc
Q 001567 374 SMMQWDEYGYR-LYAIEEGSS----ERV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 446 (1052)
Q Consensus 374 ~~~~W~~~~~~-l~~~~~~~~----~~v-~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~ 446 (1052)
.+..||+...+ .+..+.+|. .+| +.+.+ ++.+++|+.||.|++||+..-.+. +.
T Consensus 274 kIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~-------------------~s 334 (406)
T KOG2919|consen 274 KILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE-------------------VS 334 (406)
T ss_pred eEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc-------------------cc
Confidence 89999997643 333333432 234 55555 889999999999999998763331 55
Q ss_pred ccccCCCcEEEEEEccCCCEEEEEeC
Q 001567 447 SYISQNWPVQHVAASKDGMFLAVAGL 472 (1052)
Q Consensus 447 ~~~~h~~~V~~va~SpdG~~lavag~ 472 (1052)
.+..+..-++.++++|-=..+|+++.
T Consensus 335 v~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 335 VTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred ccccccccccceecCcccceeeeccC
Confidence 66778888999999999888888763
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.73 E-value=1.5e-16 Score=172.71 Aligned_cols=273 Identities=14% Similarity=0.116 Sum_probs=196.6
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCcee-EEEE--------eecCCCC-CCCCCCeeEEEECCCCCEE
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLI-RTVS--------LYDWGYS-MDDTGPVSCIAWTPDNSAF 322 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~-~~l~--------~~~~~~~-~~h~g~V~~l~~SpDg~~L 322 (1052)
..|.-++ |++++|+.++..+++.||+|.=|++.+ +... ..+. +.....+ .+|...|.+++.||||++|
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~t-gk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLT-GKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhc-CcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence 4677777 999999999999999999999999987 5422 1111 1111122 2699999999999999999
Q ss_pred EEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccEEEE
Q 001567 323 AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF 399 (1052)
Q Consensus 323 asg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~ 399 (1052)
|+|+.|..|.||+..+...+.++.+| ...|.+++|.... ..+.+++ ++++|+.+....+-+.-||++.|..+
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~gh-r~~V~~L~fr~gt----~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGH-RGAVSSLAFRKGT----SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred EecCCCceEEEecCcccchhhccccc-ccceeeeeeecCc----cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 99999999999999999999999998 7889999997654 4444554 89999999888888889999999887
Q ss_pred ec---cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE
Q 001567 400 SF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (1052)
Q Consensus 400 s~---~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i 476 (1052)
+- .+.+..|+.|.++++|.+.. +. -..|.+|.+.+.|++|- |..++++||.+|.|
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~e-es--------------------qlifrg~~~sidcv~~I-n~~HfvsGSdnG~I 350 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPE-ES--------------------QLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSI 350 (479)
T ss_pred chhcccceEEeccccceeEEEeccc-cc--------------------eeeeeCCCCCeeeEEEe-cccceeeccCCceE
Confidence 77 55555566999999999832 22 12466788899999997 56788999999999
Q ss_pred -EEEccCCcE-EEecCccceeee--------EEEEEEE--eCCEEEEEEEecCCCeEEEEEeeCC-CCCCcceeEEeecC
Q 001567 477 -LYDIRQKKW-RVFGDITQEQKI--------QSKGLLW--LGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSLL 543 (1052)
Q Consensus 477 -lwd~~s~~w-~~f~~~~~e~~~--------~v~gl~W--~~~~li~~~~~~~~~~~elrly~~~-~ld~~~~l~~~~~~ 543 (1052)
+|++..++- ..+.+.++-... =+++++- ..|.++++ +.+..||+|-.. ++..-.+++..++.
T Consensus 351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asG-----S~~G~vrLW~i~~g~r~i~~l~~ls~~ 425 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASG-----SWSGCVRLWKIEDGLRAINLLYSLSLV 425 (479)
T ss_pred EEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEec-----CCCCceEEEEecCCccccceeeecccc
Confidence 999987662 122222211111 1222222 13344444 566889999886 55555566666555
Q ss_pred Ccc--EEEEeeCCEEEEE
Q 001567 544 AKP--IVMDVYEDYILVT 559 (1052)
Q Consensus 544 ~~~--~~~s~~~~~llv~ 559 (1052)
.-+ +.++..+..++++
T Consensus 426 GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 426 GFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cEEEEEEEccCCCEEEEe
Confidence 422 2344555656664
No 114
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=6.6e-17 Score=170.27 Aligned_cols=250 Identities=17% Similarity=0.187 Sum_probs=183.9
Q ss_pred cCCCCeE-EEEEcCCC-CEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 001567 254 LGSGDAV-CASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~-~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v 331 (1052)
.||.+.| |++=+|.. ..+|+|+.||.|++||+.. -.++.+++. |.|.|..|+++. ..++++++|++|
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-R~~~~~f~A--------H~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-RECIRTFKA--------HEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhh-hhhhheeec--------ccCceeeEEecc--cceEEecCCcce
Confidence 6899999 99999987 8899999999999999987 778889998 999999999987 788899999999
Q ss_pred EEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee-eeeEEecCCceEEEEecCCcccEEE--Eec--cceee
Q 001567 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLI--FSF--GKCCL 406 (1052)
Q Consensus 332 ~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~~~~~~v~~--~s~--~k~~~ 406 (1052)
+.|...+. +..++.+. +.+..+.-+..+ ..+++++ .+-+|+..-...+....-..+.|.+ |++ ...++
T Consensus 132 K~wk~~~~-p~~tilg~--s~~~gIdh~~~~----~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 132 KQWKIDGP-PLHTILGK--SVYLGIDHHRKN----SVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred eeeeccCC-cceeeecc--cccccccccccc----ccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 99999884 56666542 333333332222 5566666 8889998776666665545566644 444 44666
Q ss_pred eeccCCceeeeEeeecCceEEEEecCCcchhee---------------------eeeccC-cccccCCCcEEEEEEccCC
Q 001567 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI---------------------LHLNLP-VSYISQNWPVQHVAASKDG 464 (1052)
Q Consensus 407 s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w---------------------~~~~~p-~~~~~h~~~V~~va~SpdG 464 (1052)
+++.|+++.++|+.++.----++.+.-++...| ..++-| ..+.+|...|..+.|||.|
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG 284 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG 284 (433)
T ss_pred eeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc
Confidence 777999999999887654322222221111112 233334 4678999999999999999
Q ss_pred CEEEEEeCCceE-EEEccCCcEEEecCccceeeeE-EEEEEEe--CCEEEEEEEecCCCeEEEEEeeCC
Q 001567 465 MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ-SKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (1052)
Q Consensus 465 ~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~-v~gl~W~--~~~li~~~~~~~~~~~elrly~~~ 529 (1052)
+-+++||.|.+| +|.++.+.-+ +..+.+-|. |.++.|. ..++++| +.+..+|+|...
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SR---diYhtkRMq~V~~Vk~S~Dskyi~SG-----Sdd~nvRlWka~ 345 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSR---DIYHTKRMQHVFCVKYSMDSKYIISG-----SDDGNVRLWKAK 345 (433)
T ss_pred chhccccccceEEEeecCCCcch---hhhhHhhhheeeEEEEeccccEEEec-----CCCcceeeeecc
Confidence 999999999999 9999877644 222333344 7788886 4588877 667889999663
No 115
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=7.7e-16 Score=159.07 Aligned_cols=255 Identities=15% Similarity=0.162 Sum_probs=164.8
Q ss_pred EEee-CCcEEEEEecCCceeeeeecccce-----ecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEe
Q 001567 225 VLYS-NGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1052)
Q Consensus 225 ~~s~-dG~~~~~~~~d~~i~~w~~~~~~~-----~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~ 297 (1052)
+||| ...++++++-|+++|+|+...... ...|.++| |++|+.||..+++|+.|+.+++||+.+ ++ ...+..
T Consensus 34 ~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S-~Q-~~~v~~ 111 (347)
T KOG0647|consen 34 AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS-GQ-VSQVAA 111 (347)
T ss_pred EeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC-CC-eeeeee
Confidence 3455 444566788899999999876311 25689999 999999999999999999999999997 54 555666
Q ss_pred ecCCCCCCCCCCeeEEEECCCCC--EEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCcccee--eee
Q 001567 298 YDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM--SGT 373 (1052)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~SpDg~--~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~--sg~ 373 (1052)
|.++|.++.|-+... +|++|+.|++|+.||+....++.++.-. ..+.+... .+.+++ ++.
T Consensus 112 --------Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--eRvYa~Dv------~~pm~vVata~ 175 (347)
T KOG0647|consen 112 --------HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--ERVYAADV------LYPMAVVATAE 175 (347)
T ss_pred --------cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--ceeeehhc------cCceeEEEecC
Confidence 999999999988655 9999999999999999998888887643 33333221 223332 222
Q ss_pred -eeeEEecCCceEEEE-ecC---C-cccEEEEeccceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcc
Q 001567 374 -SMMQWDEYGYRLYAI-EEG---S-SERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (1052)
Q Consensus 374 -~~~~W~~~~~~l~~~-~~~---~-~~~v~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~ 447 (1052)
.+.+++++++.-... ... . ...|.+|.-.+-.+-|+..|.+-+..+..+.. ...+.. ++...
T Consensus 176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~---------~~nFtF---kCHR~ 243 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP---------KDNFTF---KCHRS 243 (347)
T ss_pred CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc---------cCceeE---EEecc
Confidence 677777755422111 110 0 01122222233335566666555544433211 001111 01110
Q ss_pred ---cccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEEE
Q 001567 448 ---YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIV 510 (1052)
Q Consensus 448 ---~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~~~~li 510 (1052)
..+.-.+|++++|+|.-..||++|.||+. .||-+. |-|++..+.+.+.+.|.++--.|.+.+
T Consensus 244 ~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda-r~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 244 TNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA-RTKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred CCCCCCceEEecceEeecccceEEEecCCceEEEecchh-hhhhhccCcCCCccceeEecCCCCEEE
Confidence 11113468899999999999999999999 999765 346666666666666655544555544
No 116
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=7.4e-17 Score=181.06 Aligned_cols=230 Identities=17% Similarity=0.234 Sum_probs=178.6
Q ss_pred EeeCCcEEEEEecCCceeeeeecccce-----ecCCCCeE-EEEE-cCCCCEEEEEeeCCeEEEEecCCCC-ceeEEEEe
Q 001567 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAV-CASI-APEQQILAVGTRRGVVELYDLAESA-SLIRTVSL 297 (1052)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~~~~~-----~~gh~~~v-~va~-spd~~~lAsgs~Dg~V~vwd~~~~~-~~~~~l~~ 297 (1052)
..-+|+.+++++.|.++++|+...... +..|.+.| |+++ .++..++|+|+-|+.|.+||+.... +.+.++..
T Consensus 81 L~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~ 160 (735)
T KOG0308|consen 81 LCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN 160 (735)
T ss_pred hhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc
Confidence 456889999999999999999886632 26799999 9999 8899999999999999999998721 23333322
Q ss_pred ecC-CCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---
Q 001567 298 YDW-GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (1052)
Q Consensus 298 ~~~-~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--- 373 (1052)
..- ....++..+|.+++-.+.|..+++|+-.+-+++||..+++.+..|+|| +..|..+..+++| ..++|++
T Consensus 161 ~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH-TdNVr~ll~~dDG----t~~ls~sSDg 235 (735)
T KOG0308|consen 161 VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH-TDNVRVLLVNDDG----TRLLSASSDG 235 (735)
T ss_pred cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc-ccceEEEEEcCCC----CeEeecCCCc
Confidence 111 112268899999999999999999999999999999999999999998 8889999999999 7888876
Q ss_pred eeeEEecCCceEEEEecCCcccEEEEec---cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCccccc
Q 001567 374 SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (1052)
Q Consensus 374 ~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~ 450 (1052)
++++|+.+..+++.+..-|.+.||++.. -+.+.+|+.|+.+..-++.......++. .
T Consensus 236 tIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic--------------------k 295 (735)
T KOG0308|consen 236 TIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC--------------------K 295 (735)
T ss_pred eEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee--------------------c
Confidence 9999999999999999999999987766 5678899999988766655433222111 2
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCceE-EEEc
Q 001567 451 QNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1052)
Q Consensus 451 h~~~V~~va~SpdG~~lavag~dG~i-lwd~ 480 (1052)
...||..+..+.+.+-+-+++.|+.| -|..
T Consensus 296 ~daPv~~l~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 296 EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred CCCchhhhhhccccCCceeeeccccceecCC
Confidence 23455555555444444567777766 5543
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.72 E-value=4.7e-16 Score=176.06 Aligned_cols=213 Identities=15% Similarity=0.249 Sum_probs=173.3
Q ss_pred eCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCC
Q 001567 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (1052)
Q Consensus 228 ~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~ 303 (1052)
.|+-.+++++.|.++.+|........ .||...| |++...++. +++||.|.|+++|.. +++...+.+
T Consensus 69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~---~~l~~~l~g------ 138 (745)
T KOG0301|consen 69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI---GELVYSLQG------ 138 (745)
T ss_pred ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc---hhhhcccCC------
Confidence 46666788899999999877665543 7999999 888888887 999999999999987 455666777
Q ss_pred CCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEec
Q 001567 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 380 (1052)
Q Consensus 304 ~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~ 380 (1052)
|+.+|++++.-|++ .++||+.|++|++|.- ++++.++.+| ++-|..+++-+++ .++|++ .++.|+.
T Consensus 139 --H~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gH-tD~VRgL~vl~~~-----~flScsNDg~Ir~w~~ 207 (745)
T KOG0301|consen 139 --HTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGH-TDCVRGLAVLDDS-----HFLSCSNDGSIRLWDL 207 (745)
T ss_pred --cchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccc-hhheeeeEEecCC-----CeEeecCCceEEEEec
Confidence 99999999999998 8899999999999975 6789999998 8899999998875 345554 8999999
Q ss_pred CCceEEEEecCCcccEEEEec---cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEE
Q 001567 381 YGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (1052)
Q Consensus 381 ~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~ 457 (1052)
+++.+....||++-++.++. ...+++++.|+++++|... +. -+.+++|.+ .|++
T Consensus 208 -~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~--------------~q~I~lPtt------siWs 264 (745)
T KOG0301|consen 208 -DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--EC--------------VQVITLPTT------SIWS 264 (745)
T ss_pred -cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ce--------------EEEEecCcc------ceEE
Confidence 56677777899999988884 7788999999999999854 11 133444442 5788
Q ss_pred EEEccCCCEEEEEeCCceE-EEEccCCcE
Q 001567 458 VAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (1052)
Q Consensus 458 va~SpdG~~lavag~dG~i-lwd~~s~~w 485 (1052)
+.+=++|. +++||.||.+ +|.....||
T Consensus 265 a~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 265 AKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 88888886 5689999999 999876665
No 118
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.71 E-value=1.5e-16 Score=173.02 Aligned_cols=264 Identities=13% Similarity=0.122 Sum_probs=194.8
Q ss_pred EEEeeCCeEEEEEcCCcEEEeecCCcee--EEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCce
Q 001567 25 IYFKVNNGLLLIASPCHIELWSSSQHKV--RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (1052)
Q Consensus 25 v~fSpdg~llA~~sd~~v~IW~~~~~~~--~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~ 102 (1052)
+.+|...++.-+++.+.|+|||+.+++. ++.. ...+.....+.++...|||+.|.||....+|-|||+......
T Consensus 425 vtIS~~trhVyTgGkgcVKVWdis~pg~k~Pvsq----Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr 500 (705)
T KOG0639|consen 425 VTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQ----LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR 500 (705)
T ss_pred EEecCCcceeEecCCCeEEEeeccCCCCCCcccc----ccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc
Confidence 5688889999999999999999976532 1221 233444445678999999999999999999999999855432
Q ss_pred eecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceee
Q 001567 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (1052)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i 182 (1052)
+.. .....+......++++|.+..+.+++||.|.+|+...+....
T Consensus 501 ika-------------------eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr---------------- 545 (705)
T KOG0639|consen 501 IKA-------------------ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR---------------- 545 (705)
T ss_pred hhh-------------------hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee----------------
Confidence 111 000111122344677888888899999999885443332111
Q ss_pred cccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeecccceecCCC--CeE
Q 001567 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSG--DAV 260 (1052)
Q Consensus 183 ~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~gh~--~~v 260 (1052)
.+.++...+. ++.+++||..+.+|+-|.+++-||...+.....|. .-|
T Consensus 546 --------------------qfqGhtDGas----------cIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQI 595 (705)
T KOG0639|consen 546 --------------------QFQGHTDGAS----------CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQI 595 (705)
T ss_pred --------------------cccCCCCCce----------eEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhh
Confidence 1122333333 34579999999999999999999999887766663 445
Q ss_pred -EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCC
Q 001567 261 -CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1052)
Q Consensus 261 -~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~ 339 (1052)
++...|++.++|+|-+++.|.|-.... .....+.. |..-|.++.|++.|+++++.+.|+-+-.|.+.-|
T Consensus 596 fSLg~cP~~dWlavGMens~vevlh~sk--p~kyqlhl--------heScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMENSNVEVLHTSK--PEKYQLHL--------HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred eecccCCCccceeeecccCcEEEEecCC--ccceeecc--------cccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 899999999999999999998887653 44455666 8999999999999999999999999999998666
Q ss_pred eEEEEecccccCceeeeeEcCCCCCCccceeeee
Q 001567 340 RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1052)
Q Consensus 340 ~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (1052)
..+...++ .++|.++.+|.++ .++++|+
T Consensus 666 asiFqskE--~SsVlsCDIS~dd----kyIVTGS 693 (705)
T KOG0639|consen 666 ASIFQSKE--SSSVLSCDISFDD----KYIVTGS 693 (705)
T ss_pred cceeeccc--cCcceeeeeccCc----eEEEecC
Confidence 55555544 4778888888887 7777776
No 119
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=6.5e-16 Score=159.54 Aligned_cols=236 Identities=10% Similarity=0.099 Sum_probs=177.8
Q ss_pred ecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 001567 253 ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (1052)
Q Consensus 253 ~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v 331 (1052)
+.||.+.| .++.......+++++.|.+-+||.+++ +.++.+..+ |+|.|+|++|+|.|.++++++.|++-
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~G--------H~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYTG--------HTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeecc--------cccceeeEEeccccceEEEccCCcch
Confidence 36899999 998888888999999999999999998 999999988 99999999999999999999999999
Q ss_pred EEEEc------CC----------------------------------CeEEEEecccccCceeeeeEcCCCCCCccceee
Q 001567 332 TVWSV------SG----------------------------------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (1052)
Q Consensus 332 ~vWd~------~~----------------------------------~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~s 371 (1052)
.||.. .. ..+++.+.+| .+.|.+..|-..+ +.+++
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH-~~vV~a~dWL~gg----~Q~vT 289 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH-RAVVSACDWLAGG----QQMVT 289 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc-ccceEehhhhcCc----ceeee
Confidence 99972 10 0124455555 5555555555555 67777
Q ss_pred ee---eeeEEecCCceEEEEecCCcccEEEE--ec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccC
Q 001567 372 GT---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (1052)
Q Consensus 372 g~---~~~~W~~~~~~l~~~~~~~~~~v~~~--s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p 445 (1052)
++ +..+||.++++++..+.||+..+.-. .+ .+.+++.+.|.+.++||+...-. -.
T Consensus 290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~-------------------sV 350 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ-------------------SV 350 (481)
T ss_pred eeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcc-------------------ee
Confidence 77 88999999999999999999888433 33 77888999999999999863222 24
Q ss_pred cccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEe-CCEEEEEEEecCCCeEEE
Q 001567 446 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL-GKIIVVCNYIDSSNTYEL 523 (1052)
Q Consensus 446 ~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~-~~~li~~~~~~~~~~~el 523 (1052)
..|.||...|+++.|..| ..+++|+.|.++ +||+...+-.+-.-. .. -.+..+.-. ++-+|+. -....++
T Consensus 351 ~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR-td--S~~NRvavs~g~~iIAi----PhDNRqv 422 (481)
T KOG0300|consen 351 AVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR-TD--SPANRVAVSKGHPIIAI----PHDNRQV 422 (481)
T ss_pred eeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee-cC--CccceeEeecCCceEEe----ccCCceE
Confidence 568899999999999854 568899999999 999987653321100 00 011122222 3334432 1345889
Q ss_pred EEeeCC
Q 001567 524 LFYPRY 529 (1052)
Q Consensus 524 rly~~~ 529 (1052)
|+|+..
T Consensus 423 RlfDln 428 (481)
T KOG0300|consen 423 RLFDLN 428 (481)
T ss_pred EEEecC
Confidence 999874
No 120
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.71 E-value=5.9e-16 Score=168.40 Aligned_cols=270 Identities=18% Similarity=0.164 Sum_probs=178.0
Q ss_pred hhhcCccceEEEcCCc-cEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeec-
Q 001567 64 VQREGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD- 141 (1052)
Q Consensus 64 l~~~G~~~~v~wSPDg-~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d- 141 (1052)
+.+.|++..+..-|.. ..||+.+..+.+.|||......... ..+.+.+.+.+..... .+.-.+....
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~-----~~~~~~Pdl~L~gH~~------eg~glsWn~~~ 189 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK-----ASGECRPDLRLKGHEK------EGYGLSWNRQQ 189 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc-----ccccCCCceEEEeecc------ccccccccccc
Confidence 5577999999999965 4788889999999999974432111 1112233332222111 1111222222
Q ss_pred CCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcc
Q 001567 142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221 (1052)
Q Consensus 142 ~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 221 (1052)
...++.++.|+.+..|+.+........+ .......++...|.+++|++.-
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~-----------------------------~p~~~~~~h~~~VeDV~~h~~h- 239 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVV-----------------------------DPKTIFSGHEDVVEDVAWHPLH- 239 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccc-----------------------------cceEEeecCCcceehhhccccc-
Confidence 3467788889998875444332111100 0112234677778888886643
Q ss_pred eEEEEeeCCcEEEEEecCCceeeeeeccc--ce---ecCCCCeE-EEEEcC-CCCEEEEEeeCCeEEEEecCCCCceeEE
Q 001567 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKI--DK---ELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRT 294 (1052)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~w~~~~~--~~---~~gh~~~v-~va~sp-d~~~lAsgs~Dg~V~vwd~~~~~~~~~~ 294 (1052)
-..+.+.++|+.+.+||.... +. ..+|...+ |++||| ++.+||+|+.|++|++||+++-...+++
T Consensus 240 --------~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~ 311 (422)
T KOG0264|consen 240 --------EDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT 311 (422)
T ss_pred --------hhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee
Confidence 234444455556667887742 11 26899999 999999 5678999999999999999986677888
Q ss_pred EEeecCCCCCCCCCCeeEEEECCCC-CEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee
Q 001567 295 VSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1052)
Q Consensus 295 l~~~~~~~~~~h~g~V~~l~~SpDg-~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (1052)
+.+ |...|.+|.|||+. ..||+++.|+.+.|||+..-....+ +..+.+
T Consensus 312 ~e~--------H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~---------------~eda~d-------- 360 (422)
T KOG0264|consen 312 FEG--------HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS---------------PEDAED-------- 360 (422)
T ss_pred ccC--------CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC---------------hhhhcc--------
Confidence 888 99999999999964 6999999999999999964321111 000000
Q ss_pred eeeEEecCCceEEEEecCCcccEEEEec----cceeeeeccCCceeeeEee
Q 001567 374 SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVI 420 (1052)
Q Consensus 374 ~~~~W~~~~~~l~~~~~~~~~~v~~~s~----~k~~~s~s~d~~v~~w~~~ 420 (1052)
.--+++.+..||...|..|++ --.++|++.|+.+++|...
T Consensus 361 -------gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 -------GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred -------CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 013567777889888877776 4578899999999999853
No 121
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1e-15 Score=158.48 Aligned_cols=238 Identities=17% Similarity=0.290 Sum_probs=157.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEE
Q 001567 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (1052)
Q Consensus 255 gh~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vW 334 (1052)
.|..+.|+.||+-|.+||+||.||.|.+||+.+ .+.-+.+.+ |..+|+|++||+||+.|.+++.|..+++|
T Consensus 22 d~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-~~iar~lsa--------H~~pi~sl~WS~dgr~LltsS~D~si~lw 92 (405)
T KOG1273|consen 22 DNPLAECCQFSRWGDYLAVGCANGRVVIYDFDT-FRIARMLSA--------HVRPITSLCWSRDGRKLLTSSRDWSIKLW 92 (405)
T ss_pred cCCccceEEeccCcceeeeeccCCcEEEEEccc-cchhhhhhc--------cccceeEEEecCCCCEeeeecCCceeEEE
Confidence 344455999999999999999999999999988 666667777 99999999999999999999999999999
Q ss_pred EcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee----eeeEEecCCceEEEEecCCcccE----EEEec-ccee
Q 001567 335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSERV----LIFSF-GKCC 405 (1052)
Q Consensus 335 d~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~~~~~v----~~~s~-~k~~ 405 (1052)
|+..|.++..++- .++|..+.++|... +..+++-- .+...+.....++......+... ..|+. |+++
T Consensus 93 Dl~~gs~l~rirf--~spv~~~q~hp~k~--n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yI 168 (405)
T KOG1273|consen 93 DLLKGSPLKRIRF--DSPVWGAQWHPRKR--NKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYI 168 (405)
T ss_pred eccCCCceeEEEc--cCccceeeeccccC--CeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEE
Confidence 9999988888876 47899999998752 12222211 23333322222222211111111 12444 7777
Q ss_pred eeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccC-CCcEEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 001567 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ-NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1052)
Q Consensus 406 ~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h-~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~ 483 (1052)
.+|...|.+.+.+..+.+. ...+.-. ...|+++.++..|+++++-+.|..| .|+++.-
T Consensus 169 itGtsKGkllv~~a~t~e~--------------------vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 169 ITGTSKGKLLVYDAETLEC--------------------VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI 228 (405)
T ss_pred EEecCcceEEEEecchhee--------------------eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence 7777666655544333221 2222211 2468999999999999999999999 9998631
Q ss_pred cEE-EecCccceeeeE--EEEEEE-----e--CCEEEEEEEecCCCeEEEEEeeCC
Q 001567 484 KWR-VFGDITQEQKIQ--SKGLLW-----L--GKIIVVCNYIDSSNTYELLFYPRY 529 (1052)
Q Consensus 484 ~w~-~f~~~~~e~~~~--v~gl~W-----~--~~~li~~~~~~~~~~~elrly~~~ 529 (1052)
.-. .-+..+.++.+. |..+.| . |.|++++. ...+.|.+|.+.
T Consensus 229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s----~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS----ARAHALYIWEKS 280 (405)
T ss_pred cccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc----ccceeEEEEecC
Confidence 100 011112223232 334444 2 44565542 566899999884
No 122
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.70 E-value=7.2e-16 Score=168.78 Aligned_cols=285 Identities=15% Similarity=0.207 Sum_probs=191.3
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~ 332 (1052)
.+|+..| .+++.|.|..+++|+-|-+|++||+..-....+.++..+ +..+..|++++|||.|..|.+.+...-.+
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~----P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ----PCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC----cccccccceeeecCCCCeEEEEecCccee
Confidence 6788999 999999999999999999999999864222222222211 12456799999999999888888888999
Q ss_pred EEEcCCCeEEEEec------------ccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCc----eEEEEecCCc
Q 001567 333 VWSVSGCRLMSTIR------------QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSS 393 (1052)
Q Consensus 333 vWd~~~~~l~~tl~------------~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~----~l~~~~~~~~ 393 (1052)
|+|-.|...+...+ || ...+++..|+|.. + +.+++++ ++++|+.+.. +.+..-....
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGH-ia~lt~g~whP~~--k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGH-IAELTCGCWHPDN--K-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCc-eeeeeccccccCc--c-cceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 99998876655443 44 6789999999986 3 4444444 9999998754 2333322222
Q ss_pred ccE----EEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCc--ccccCCC--cEEEEEEccCC
Q 001567 394 ERV----LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV--SYISQNW--PVQHVAASKDG 464 (1052)
Q Consensus 394 ~~v----~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~--~~~~h~~--~V~~va~SpdG 464 (1052)
.+| ..|+. ++.+++|+.||+|.+|+......+ |. .-.+|+. .|.+++||+||
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-------------------p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-------------------PVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccc-------------------cceEeeeccCCCCceeEEEecccc
Confidence 333 56666 889999999999999996322111 21 2236766 89999999999
Q ss_pred CEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEe--CCEEEEEEEecC-CCeEEEEEeeCCCCCCcceeEEe
Q 001567 465 MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDS-SNTYELLFYPRYHLDQSSLLCRK 540 (1052)
Q Consensus 465 ~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~--~~~li~~~~~~~-~~~~elrly~~~~ld~~~~l~~~ 540 (1052)
++|++=|.|++. +||++.-+-.++.-..-...+.-+.+++. ...|++|..... .....|.+|++-.|+ ..++.
T Consensus 377 ~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d---~v~ki 453 (641)
T KOG0772|consen 377 NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD---TVYKI 453 (641)
T ss_pred chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee---eEEEe
Confidence 999999999999 99997644322211111222333344444 445666644433 334568899885443 23344
Q ss_pred ecCCccEE-E--EeeCCEEEEEEcCCeEEEE
Q 001567 541 SLLAKPIV-M--DVYEDYILVTYRPFDVHIF 568 (1052)
Q Consensus 541 ~~~~~~~~-~--s~~~~~llv~~~d~~i~l~ 568 (1052)
.++...+. . .+-=+.+.+.+.||.+++|
T Consensus 454 ~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 454 DISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred cCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 44432221 1 2222568888999999998
No 123
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.6e-17 Score=186.57 Aligned_cols=214 Identities=16% Similarity=0.188 Sum_probs=181.7
Q ss_pred eeCCcEEEEEecCCceeeeeecccce---ecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCC
Q 001567 227 YSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (1052)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~~~~---~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~ 302 (1052)
-..++.+++|+.|..+.+|....+.. +.+|..+| |+.|+++..+||.|+.||+|++||+.. ++.++++.+
T Consensus 37 ~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee-Ak~vrtLtg----- 110 (825)
T KOG0267|consen 37 RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE-AKIVRTLTG----- 110 (825)
T ss_pred eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh-hhhhhhhhc-----
Confidence 45678888888888888887765533 27899999 999999999999999999999999997 888899988
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEe
Q 001567 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (1052)
Q Consensus 303 ~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~ 379 (1052)
|...+.+|.|+|-|.+.|+|+.|+.+++||....-+..+.++| ...|..++|+|+| ..+++|. ++++||
T Consensus 111 ---h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~-~~vv~~l~lsP~G----r~v~~g~ed~tvki~d 182 (825)
T KOG0267|consen 111 ---HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH-TRVVDVLRLSPDG----RWVASGGEDNTVKIWD 182 (825)
T ss_pred ---cccCcceeeeccceEEeccccccccceehhhhccCceeeecCC-cceeEEEeecCCC----ceeeccCCcceeeeec
Confidence 9999999999999999999999999999999877788899886 8889999999999 8888887 899999
Q ss_pred cCCceEEEEecCCcccEEEEec--cc-eeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEE
Q 001567 380 EYGYRLYAIEEGSSERVLIFSF--GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (1052)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~s~--~k-~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~ 456 (1052)
...|++.....+|...+..+.+ .+ .+.+|+.|+++++|++.+-+. ..........|+
T Consensus 183 ~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~--------------------I~s~~~~~~~v~ 242 (825)
T KOG0267|consen 183 LTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV--------------------ISSGKPETDGVR 242 (825)
T ss_pred ccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE--------------------eeccCCccCCce
Confidence 9999999999999988866666 33 556899999999999764221 111122356799
Q ss_pred EEEEccCCCEEEEEeCCc
Q 001567 457 HVAASKDGMFLAVAGLHG 474 (1052)
Q Consensus 457 ~va~SpdG~~lavag~dG 474 (1052)
+.+|+|||+.+++|-+..
T Consensus 243 ~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 243 SLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeeecCCceeeecCchhh
Confidence 999999999999887654
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1e-15 Score=153.74 Aligned_cols=241 Identities=15% Similarity=0.134 Sum_probs=164.1
Q ss_pred eCCeEEEEE-cCCcEEEeecCCcee---EEEEEecChhhhhhcCccceEEEcC--CccEEEEEeCCcEEEEEEEEecCce
Q 001567 29 VNNGLLLIA-SPCHIELWSSSQHKV---RLGKYKRDSESVQREGENLQAVWSP--DTKLIAVVTSSLYLHIFKVQITEKS 102 (1052)
Q Consensus 29 pdg~llA~~-sd~~v~IW~~~~~~~---~l~~~~r~~~sl~~~G~~~~v~wSP--Dg~~Lav~t~dg~l~i~~l~~~~~~ 102 (1052)
=.|+.||++ +|++|+|+.++ +.. ++..++ .+.|++..++|.+ -|..||+++.||.|.||+-+.+. -
T Consensus 21 yygkrlATcsSD~tVkIf~v~-~n~~s~ll~~L~------Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~-w 92 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVR-NNGQSKLLAELT------GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR-W 92 (299)
T ss_pred hhcceeeeecCCccEEEEEEc-CCCCceeeeEec------CCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc-h
Confidence 348999998 68999999986 443 333332 2579999999998 89999999999999999976442 1
Q ss_pred eecCCCCCCCceeeeEeeeeccccccccccceEEEEe--ec--CCeEEEEecCCcEEEEeccCccccceeecccCCCCcc
Q 001567 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SD--NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (1052)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~d--~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~ 178 (1052)
..... ...+..+|.+++ |. +-.|+++++||.|.++..+.+ ++...
T Consensus 93 ~k~~e--------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~-g~w~t---------- 141 (299)
T KOG1332|consen 93 TKAYE--------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-GGWTT---------- 141 (299)
T ss_pred hhhhh--------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-CCccc----------
Confidence 00001 122333444443 32 345788899999999888765 22111
Q ss_pred ceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcce-EEEEe--eC-CcEEEEEecCCceeeeeecccc---
Q 001567 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL-LFVLY--SN-GQLMSCSVSKKGLKLAEFIKID--- 251 (1052)
Q Consensus 179 i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~~~~s--~d-G~~~~~~~~d~~i~~w~~~~~~--- 251 (1052)
. .....|...|.++++.|.... .+.-. .+ -+.+++++.|..+++|......
T Consensus 142 -~---------------------ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~ 199 (299)
T KOG1332|consen 142 -S---------------------KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL 199 (299)
T ss_pred -h---------------------hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh
Confidence 0 011233444555555554211 00000 01 2568999999999999876541
Q ss_pred --eecCCCCeE-EEEEcCCC----CEEEEEeeCCeEEEEecCCCCcee-EE-EEeecCCCCCCCCCCeeEEEECCCCCEE
Q 001567 252 --KELGSGDAV-CASIAPEQ----QILAVGTRRGVVELYDLAESASLI-RT-VSLYDWGYSMDDTGPVSCIAWTPDNSAF 322 (1052)
Q Consensus 252 --~~~gh~~~v-~va~spd~----~~lAsgs~Dg~V~vwd~~~~~~~~-~~-l~~~~~~~~~~h~g~V~~l~~SpDg~~L 322 (1052)
.+.+|.+.| .+|+.|.- ..||++++||+|.||..+...+.. .+ ++. ....+..++||+.|+.|
T Consensus 200 e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~--------f~~~~w~vSWS~sGn~L 271 (299)
T KOG1332|consen 200 ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE--------FPDVVWRVSWSLSGNIL 271 (299)
T ss_pred hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc--------CCcceEEEEEeccccEE
Confidence 137999999 99999963 579999999999999987532221 11 222 46789999999999999
Q ss_pred EEEEcCCcEEEEEcCC
Q 001567 323 AVGWKSRGLTVWSVSG 338 (1052)
Q Consensus 323 asg~~Dg~v~vWd~~~ 338 (1052)
|+++.|+.+.+|--..
T Consensus 272 aVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 272 AVSGGDNKVTLWKENV 287 (299)
T ss_pred EEecCCcEEEEEEeCC
Confidence 9999999999996543
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.69 E-value=1e-13 Score=151.78 Aligned_cols=403 Identities=13% Similarity=0.091 Sum_probs=246.5
Q ss_pred eEEEEeeC--CeEEEEEcC---CcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEE
Q 001567 23 QIIYFKVN--NGLLLIASP---CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ 97 (1052)
Q Consensus 23 ~vv~fSpd--g~llA~~sd---~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~ 97 (1052)
-.|+||+- |.++++..+ .-+.+||.. .+.+++..+.+. ..+..+.|.|-+..|.+....|++.+|+..
T Consensus 158 ~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWq-k~~~~~~vk~sn------e~v~~a~FHPtd~nliit~Gk~H~~Fw~~~ 230 (626)
T KOG2106|consen 158 TCVAFSKINGGSLLCAVDDSNPHMLSVWDWQ-KKAKLGPVKTSN------EVVFLATFHPTDPNLIITCGKGHLYFWTLR 230 (626)
T ss_pred eeeeecccCCCceEEEecCCCccccchhhch-hhhccCcceecc------ceEEEEEeccCCCcEEEEeCCceEEEEEcc
Confidence 34789854 678888754 359999994 555555544332 335678999999999999999999999987
Q ss_pred ecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeec-CCeEEEEecCCcEEEEeccCccccceeecccCCCC
Q 001567 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (1052)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d-~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~ 176 (1052)
.+.-.....- ++ +.....|.|+... ++.++.|-++|.+.+|+-.+..... +...++..+
T Consensus 231 ~~~l~k~~~~--------------fe-----k~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k-~~~aH~ggv 290 (626)
T KOG2106|consen 231 GGSLVKRQGI--------------FE-----KREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISK-QVHAHDGGV 290 (626)
T ss_pred CCceEEEeec--------------cc-----cccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEe-EeeecCCce
Confidence 5542110000 00 0011235566543 3457788889998885443222111 111344444
Q ss_pred ccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeecccc--eec
Q 001567 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--KEL 254 (1052)
Q Consensus 177 ~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~--~~~ 254 (1052)
+++..... +.+.+.+. +.....|.+.-..++.++.....+..-++.+.+.-++.+.....+-.-.....- ..+
T Consensus 291 ~~L~~lr~---GtllSGgK--DRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~ 365 (626)
T KOG2106|consen 291 FSLCMLRD---GTLLSGGK--DRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ 365 (626)
T ss_pred EEEEEecC---ccEeecCc--cceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE
Confidence 44433221 11222111 111122222223334444333333333333333334444444433322222221 127
Q ss_pred CCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEE
Q 001567 255 GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (1052)
Q Consensus 255 gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~v 333 (1052)
||.+.. .++.+|+..++++++.|+.|++|+ + .++.-+.. -..++.|+.|.|.| .+|.|...|.+.|
T Consensus 366 gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~---------~~d~~~~~~fhpsg-~va~Gt~~G~w~V 432 (626)
T KOG2106|consen 366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKI---------IEDPAECADFHPSG-VVAVGTATGRWFV 432 (626)
T ss_pred ecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEE---------ecCceeEeeccCcc-eEEEeeccceEEE
Confidence 899988 999999999999999999999999 2 44444333 35688999999999 9999999999999
Q ss_pred EEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEec--CCceEEEEecCCcccEEEEec---ccee
Q 001567 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE--YGYRLYAIEEGSSERVLIFSF---GKCC 405 (1052)
Q Consensus 334 Wd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~--~~~~l~~~~~~~~~~v~~~s~---~k~~ 405 (1052)
.|.++..++.. ... .+.++.++|+|+| .+++-|+ .+.++.. ++........-+...|..+++ ++.+
T Consensus 433 ~d~e~~~lv~~-~~d-~~~ls~v~ysp~G----~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 433 LDTETQDLVTI-HTD-NEQLSVVRYSPDG----AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFL 506 (626)
T ss_pred EecccceeEEE-Eec-CCceEEEEEcCCC----CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceE
Confidence 99999655443 333 5789999999999 8999887 5555554 333333333223366766666 7788
Q ss_pred eeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCccc----ccCCCcEEEEEEccCCCEEEEEeCCceE-EEEc
Q 001567 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY----ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1052)
Q Consensus 406 ~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~----~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~ 480 (1052)
.+-+-|-.+-.|.-....+. ...-+.+|....+..-+ ..|+..|..++-|.+++.+|+|-..|.+ +|..
T Consensus 507 ~~~S~d~eiLyW~~~~~~~~------ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y 580 (626)
T KOG2106|consen 507 VSNSGDYEILYWKPSECKQI------TSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY 580 (626)
T ss_pred EeccCceEEEEEccccCccc------ceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence 88888888888832221111 01234567554433211 2466678889999999999999999999 8876
Q ss_pred cC
Q 001567 481 RQ 482 (1052)
Q Consensus 481 ~s 482 (1052)
--
T Consensus 581 Pc 582 (626)
T KOG2106|consen 581 PC 582 (626)
T ss_pred cc
Confidence 43
No 126
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.68 E-value=2.7e-16 Score=158.01 Aligned_cols=277 Identities=12% Similarity=0.057 Sum_probs=205.8
Q ss_pred ccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeecccce---ecCCCCeE-EEEEcCCCCEEEEEeeCCe
Q 001567 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAV-CASIAPEQQILAVGTRRGV 279 (1052)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~---~~gh~~~v-~va~spd~~~lAsgs~Dg~ 279 (1052)
..++..+|.++.|++ ++|||-++++++.|+...+-++.++.- ..||.++| ....+.+...-|+++.|-+
T Consensus 10 c~ghtrpvvdl~~s~-------itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadft 82 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSP-------ITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFT 82 (334)
T ss_pred EcCCCcceeEEeccC-------CCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccch
Confidence 346778899999977 679999999999999888877776643 27999999 9999999999999999999
Q ss_pred EEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCe-EEEEecccccCceeeeeE
Q 001567 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIV 358 (1052)
Q Consensus 280 V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~-l~~tl~~~~~~~v~s~~~ 358 (1052)
-+|||.-+ +..++.+. |.--|.+++|+.|.++|.+|+.++-++|+|+.... ....+.+| .+.|..+.|
T Consensus 83 akvw~a~t-gdelhsf~---------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~gh-tg~Ir~v~w 151 (334)
T KOG0278|consen 83 AKVWDAVT-GDELHSFE---------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGH-TGGIRTVLW 151 (334)
T ss_pred hhhhhhhh-hhhhhhhh---------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCC-CCcceeEEE
Confidence 99999877 66666664 78899999999999999999999999999997643 34456666 778888888
Q ss_pred cCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccE--EEEeccceeeeeccCCceeeeEeeecCceEEEEecCC
Q 001567 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSED 433 (1052)
Q Consensus 359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~ 433 (1052)
...+ +.++|.. ++++||..++.....+.- ...| ..++....+++....++++.|+...-+.
T Consensus 152 c~eD----~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~--------- 217 (334)
T KOG0278|consen 152 CHED----KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGL--------- 217 (334)
T ss_pred eccC----ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCceeEEeccccccc---------
Confidence 7665 5666644 999999999987776643 1223 4455544455667778899998654322
Q ss_pred cchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEE
Q 001567 434 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVC 512 (1052)
Q Consensus 434 ~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~~~~li~~ 512 (1052)
.+...+|. .|.+++.+|+...++.||.|+.+ .||..++.=..--+..+-..+.|..+.-.|....+|
T Consensus 218 -----lKs~k~P~-------nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 218 -----LKSYKMPC-------NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASG 285 (334)
T ss_pred -----eeeccCcc-------ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeecc
Confidence 11222333 48889999999999999999999 999999863322122222223333333334444444
Q ss_pred EEecCCCeEEEEEeeCC
Q 001567 513 NYIDSSNTYELLFYPRY 529 (1052)
Q Consensus 513 ~~~~~~~~~elrly~~~ 529 (1052)
+.+..||+|...
T Consensus 286 -----SEDGTirlWQt~ 297 (334)
T KOG0278|consen 286 -----SEDGTIRLWQTT 297 (334)
T ss_pred -----CCCceEEEEEec
Confidence 677889999774
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.1e-15 Score=174.93 Aligned_cols=276 Identities=14% Similarity=0.225 Sum_probs=186.3
Q ss_pred CccceEEEcCCccEEEEEeCCcEEEEEEEEecCce--e--ecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCC
Q 001567 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS--I--QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNK 143 (1052)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~ 143 (1052)
+...+|.--+|-..|+++.. ..++||.+...... . +.+..+.. .+...+..- . ..+.+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~---------------~~S~~DVkW-~-~~~~N 101 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNK---------------FYSAADVKW-G-QLYSN 101 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccce---------------eeehhhccc-c-cchhh
Confidence 34457777788888888765 47899988643321 1 11111110 000000000 1 23456
Q ss_pred eEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceE
Q 001567 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1052)
Q Consensus 144 ~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (1052)
.|++++.+|.|.+|+.+-...... + ....+|...+.+++|++
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~-l--------------------------------~~f~EH~Rs~~~ldfh~----- 143 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKL-L--------------------------------TVFNEHERSANKLDFHS----- 143 (839)
T ss_pred hheeecCCCcEEEEecCccccchh-h--------------------------------hHhhhhccceeeeeecc-----
Confidence 788889999998754432111111 0 12345667788877743
Q ss_pred EEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCC-CCEEEEEeeCCeEEEEecCCCCceeEEEEee
Q 001567 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd-~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~ 298 (1052)
..-.++++|+.|++++.||....+.. .+...+| .|.|+|. +..+|++...|.+++||++.+.++...+..
T Consensus 144 ----tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A- 218 (839)
T KOG0269|consen 144 ----TEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA- 218 (839)
T ss_pred ----CCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc-
Confidence 34568899999999999998754332 4567788 9999994 778999999999999999986677777776
Q ss_pred cCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeE--EEEecccccCceeeeeEcCCCCCCccceeeee---
Q 001567 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (1052)
Q Consensus 299 ~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l--~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--- 373 (1052)
|.|+|.|+.|+|++.+||||++|+.|+||++.+++. +.++. ...+|..+.|.|.-. ..|++++
T Consensus 219 -------H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn--Tiapv~rVkWRP~~~---~hLAtcsmv~ 286 (839)
T KOG0269|consen 219 -------HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN--TIAPVGRVKWRPARS---YHLATCSMVV 286 (839)
T ss_pred -------ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe--ecceeeeeeeccCcc---chhhhhhccc
Confidence 999999999999999999999999999999987654 34443 357899999999852 3455544
Q ss_pred --eeeEEecCC-ceEEEEecCCcccEEEEec----cceeeeeccCCceee
Q 001567 374 --SMMQWDEYG-YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYA 416 (1052)
Q Consensus 374 --~~~~W~~~~-~~l~~~~~~~~~~v~~~s~----~k~~~s~s~d~~v~~ 416 (1052)
.+.+||+.. |-...+...|++.+..+.+ ...+.+++.|+++..
T Consensus 287 dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 287 DTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred cceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 889999854 4556667777776633333 223446666665543
No 128
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.68 E-value=6.4e-15 Score=151.30 Aligned_cols=231 Identities=17% Similarity=0.225 Sum_probs=174.3
Q ss_pred cCCCCeE-EEEEcC-CCCEEEEEeeCCeEEEEecCCCCc-----eeE-EEEeecCCCCCCCCCCeeEEEECC-CCCEEEE
Q 001567 254 LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESAS-----LIR-TVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAV 324 (1052)
Q Consensus 254 ~gh~~~v-~va~sp-d~~~lAsgs~Dg~V~vwd~~~~~~-----~~~-~l~~~~~~~~~~h~g~V~~l~~Sp-Dg~~Las 324 (1052)
.-|.+.| .+.+.+ .|+++.+|++||.|.|||++.... ++. ..-....+...+|.-.|.++.|-| |.-.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 4578888 888887 699999999999999999976221 111 111112233456999999999999 7778999
Q ss_pred EEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccEEEEec
Q 001567 325 GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF 401 (1052)
Q Consensus 325 g~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~ 401 (1052)
++-|.+++|||+.+-+..-.+... +.|.+-+.||-. .+...++.|. ++++-|...|..-.++.||.+.|+++++
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me--~~VYshamSp~a-~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKME--GKVYSHAMSPMA-MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ccccceEEEeecccceeeEEeecC--ceeehhhcChhh-hcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 999999999999998777666643 457777777764 3345666665 8899999999999999999999977776
Q ss_pred ----cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-
Q 001567 402 ----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (1052)
Q Consensus 402 ----~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i- 476 (1052)
.-.++||+.|+.+++||+......+.+...+++ ...++..+-.+|++.|..+||+.||.++++.|.|..+
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-----k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r 271 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-----KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIR 271 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccC-----ccCccccccccccceeeeeeecccchhhhhccCccceE
Confidence 235789999999999999887665554443332 1111223455899999999999999999999999999
Q ss_pred EEEccCCcE--EEecCcc
Q 001567 477 LYDIRQKKW--RVFGDIT 492 (1052)
Q Consensus 477 lwd~~s~~w--~~f~~~~ 492 (1052)
+|+..+|+- +.|+...
T Consensus 272 ~wn~~~G~ntl~~~g~~~ 289 (397)
T KOG4283|consen 272 VWNMESGRNTLREFGPII 289 (397)
T ss_pred EeecccCccccccccccc
Confidence 999998874 3455433
No 129
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=4.3e-15 Score=161.27 Aligned_cols=275 Identities=17% Similarity=0.251 Sum_probs=189.1
Q ss_pred ceEEEEeeCCeEEEEEc-CCcEEEeecCCceeE-EEEEecChhhhhhcCccceEEEcCCcc-EEEEEeCCcEEEEEEEEe
Q 001567 22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVR-LGKYKRDSESVQREGENLQAVWSPDTK-LIAVVTSSLYLHIFKVQI 98 (1052)
Q Consensus 22 ~~vv~fSpdg~llA~~s-d~~v~IW~~~~~~~~-l~~~~r~~~sl~~~G~~~~v~wSPDg~-~Lav~t~dg~l~i~~l~~ 98 (1052)
-..|.|.|...+|.+++ |++++|+.+++..-+ +.+.. + ..-++.+++|.|+|+ .+++++...++..||+.+
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-----l-~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-----L-EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee-----e-ccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 35588999999888885 899999988632211 11111 1 124567999999999 999999999999999986
Q ss_pred cCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccC-ccccceeecccCCCCc
Q 001567 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKG-EFYGAFELVHSSNDSS 177 (1052)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~-~~~~~~~l~~~~~~~~ 177 (1052)
.+.... +++.+.. .....-..+++++..|++.+.+|.|+++.-.. +....+
T Consensus 290 ak~~k~---~~~~g~e---------------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~---------- 341 (514)
T KOG2055|consen 290 AKVTKL---KPPYGVE---------------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF---------- 341 (514)
T ss_pred cccccc---cCCCCcc---------------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee----------
Confidence 653211 1110000 00111234567888999999999998864321 111111
Q ss_pred cceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee----
Q 001567 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---- 253 (1052)
Q Consensus 178 ~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---- 253 (1052)
.-.+.|.+++ |++||+.++..+.++.+.+||.....+.
T Consensus 342 ----------------------------KieG~v~~~~----------fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~ 383 (514)
T KOG2055|consen 342 ----------------------------KIEGVVSDFT----------FSSDSKELLASGGTGEVYVWNLRQNSCLHRFV 383 (514)
T ss_pred ----------------------------eeccEEeeEE----------EecCCcEEEEEcCCceEEEEecCCcceEEEEe
Confidence 1123355544 5799999999999999999998876553
Q ss_pred -cCCCCeEEEEEcCCCCEEEEEeeCCeEEEEecCCC-----CceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 001567 254 -LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES-----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1052)
Q Consensus 254 -~gh~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~-----~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~ 327 (1052)
.|....++++.|++++++|+|+..|.|-|||.++. .+++.++.. -+..|++++|+||++.||.+|.
T Consensus 384 D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN--------Ltt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 384 DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN--------LTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred ecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh--------hheeeeeeeeCcchhhhhhhhh
Confidence 34444557888999999999999999999996541 233444433 4678999999999999888774
Q ss_pred --CCcEEEEEcCCCeEEEEeccc--ccCceeeeeEcCCCCCCccceeeee---eeeEEec
Q 001567 328 --SRGLTVWSVSGCRLMSTIRQI--SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 380 (1052)
Q Consensus 328 --Dg~v~vWd~~~~~l~~tl~~~--~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~ 380 (1052)
+..+++-.+.++..+..+... ..+.|++++|||.+ .+++-|. .+.+|-.
T Consensus 456 ~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s----G~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 456 VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS----GYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC----ceEEeecCCCceeeEee
Confidence 578999999888777665532 13568999999987 6666553 5555543
No 130
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.67 E-value=1.5e-14 Score=157.65 Aligned_cols=199 Identities=13% Similarity=0.184 Sum_probs=142.8
Q ss_pred EEEEEecCCceeeeeecccce----------ecCCCCeE-EEEEcCC-CCEEEEEeeCCeEEEEecCCC-CceeEEEEee
Q 001567 232 LMSCSVSKKGLKLAEFIKIDK----------ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAES-ASLIRTVSLY 298 (1052)
Q Consensus 232 ~~~~~~~d~~i~~w~~~~~~~----------~~gh~~~v-~va~spd-~~~lAsgs~Dg~V~vwd~~~~-~~~~~~l~~~ 298 (1052)
.+++++.|+++.+||...... ..+|++.| .++|+|. ..++++.+.|+.+.|||++.. .+..+...+
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a- 270 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA- 270 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-
Confidence 467778889999998753222 16899999 9999994 678999999999999999851 344445555
Q ss_pred cCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEcCCC-eEEEEecccccCceeeeeEcCCCCCCccceeeeeeee
Q 001567 299 DWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMM 376 (1052)
Q Consensus 299 ~~~~~~~h~g~V~~l~~Sp-Dg~~Lasg~~Dg~v~vWd~~~~-~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~ 376 (1052)
|+++|+|++|+| ++..||+|+.|++|++||+..- ..+.++.+| ...|..+.|+|.. +.
T Consensus 271 -------h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~----et-------- 330 (422)
T KOG0264|consen 271 -------HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHN----ET-------- 330 (422)
T ss_pred -------cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCC----Cc--------
Confidence 999999999999 7789999999999999999763 457777777 6677777777765 21
Q ss_pred EEecCCceEEEEecCCcccEEEEeccceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEE
Q 001567 377 QWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (1052)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~ 456 (1052)
.++|.+.|+.+.+||+..-+....--.+.+.+ ..+...--||...|.
T Consensus 331 ---------------------------vLASSg~D~rl~vWDls~ig~eq~~eda~dgp------pEllF~HgGH~~kV~ 377 (422)
T KOG0264|consen 331 ---------------------------VLASSGTDRRLNVWDLSRIGEEQSPEDAEDGP------PELLFIHGGHTAKVS 377 (422)
T ss_pred ---------------------------eeEecccCCcEEEEeccccccccChhhhccCC------cceeEEecCcccccc
Confidence 23355677777777765433211000000000 001122348999999
Q ss_pred EEEEccCCCE-EEEEeCCceE-EEEccCCc
Q 001567 457 HVAASKDGMF-LAVAGLHGLI-LYDIRQKK 484 (1052)
Q Consensus 457 ~va~SpdG~~-lavag~dG~i-lwd~~s~~ 484 (1052)
..+|+|+..+ +++++.|+.. +|.+...-
T Consensus 378 DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i 407 (422)
T KOG0264|consen 378 DFSWNPNEPWTIASVAEDNILQIWQMAENI 407 (422)
T ss_pred cccCCCCCCeEEEEecCCceEEEeeccccc
Confidence 9999998764 6788999999 99987543
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=8.7e-15 Score=159.46 Aligned_cols=235 Identities=15% Similarity=0.209 Sum_probs=173.2
Q ss_pred cEEEEEe-cCCceeeeeecccceec---CCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCC
Q 001567 231 QLMSCSV-SKKGLKLAEFIKIDKEL---GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (1052)
Q Consensus 231 ~~~~~~~-~d~~i~~w~~~~~~~~~---gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~ 305 (1052)
.+++++. ....+.+|...+..... -..++| |++-+|+|.+|+.|+..|.+.+|.+.+ |.++..+..
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~a-------- 121 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVLSA-------- 121 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHHHh--------
Confidence 3444333 34456778765543221 123567 999999999999999999999999998 998888887
Q ss_pred CCCCeeEEEECCCCCEEEEEEcCCcEEEEEcC---------CCeEEEEecccccCceeeeeEcCCCCCCccceeeee---
Q 001567 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS---------GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (1052)
Q Consensus 306 h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~---------~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--- 373 (1052)
|--.|+|+.||-||.+|+||+.||.|.+|++. +-..++.+.+| .-+|+++...+.+ ....+.+.+
T Consensus 122 HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H-tlsITDl~ig~Gg--~~~rl~TaS~D~ 198 (476)
T KOG0646|consen 122 HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH-TLSITDLQIGSGG--TNARLYTASEDR 198 (476)
T ss_pred hccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC-cceeEEEEecCCC--ccceEEEecCCc
Confidence 99999999999999999999999999999872 33567778777 6789998887765 334566665
Q ss_pred eeeEEecCCceEEEEecCCcccE--EEEec-cceeeeeccCCceeeeEeeecCceE--EEEecCCcchheeeeeccCccc
Q 001567 374 SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRL--LVVQSEDTDELKILHLNLPVSY 448 (1052)
Q Consensus 374 ~~~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l--~~~~~~~~~~~~w~~~~~p~~~ 448 (1052)
++++|+...+.++.+..- ...+ +.+++ .+.+..|+.+|.+.+-++.+....- ....+.. -+.. -...+
T Consensus 199 t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~-----~~~t-~~~~~ 271 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRH-----EENT-QINVL 271 (476)
T ss_pred eEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccc-----cccc-eeeee
Confidence 999999999998887643 2233 77777 6677788889887665544322100 0000000 0011 12356
Q ss_pred ccCCC--cEEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 001567 449 ISQNW--PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1052)
Q Consensus 449 ~~h~~--~V~~va~SpdG~~lavag~dG~i-lwd~~s~~ 484 (1052)
.||.+ +|+|+++|-||..|++|+.||.+ +||+.+++
T Consensus 272 ~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 272 VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 78888 99999999999999999999999 99998864
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.5e-15 Score=165.24 Aligned_cols=264 Identities=14% Similarity=0.137 Sum_probs=181.2
Q ss_pred eEEEEEc--CCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCC
Q 001567 32 GLLLIAS--PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQ 109 (1052)
Q Consensus 32 ~llA~~s--d~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~ 109 (1052)
.+++++. ...+.+|... +..+...+ ..--|++.+++=+|+|.+|+.+|-.|.|.+|.+.+|.-......|
T Consensus 51 ~yllsaq~~rp~l~vw~i~-k~~~~~q~------~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH- 122 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEIL-KKDQVVQY------IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH- 122 (476)
T ss_pred hheeeecccCccccccccC-chhhhhhh------cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh-
Confidence 4666663 4579999985 44333311 223588999999999999999999999999999977632222222
Q ss_pred CCCceeeeEeeeeccccccccccceEEEE--eecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCC
Q 001567 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS 187 (1052)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~ 187 (1052)
--.|+|+ +.|+..++.|+.||.|..|....-...... +
T Consensus 123 ----------------------YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~-----~------------- 162 (476)
T KOG0646|consen 123 ----------------------YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND-----H------------- 162 (476)
T ss_pred ----------------------ccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC-----C-------------
Confidence 2235554 446678999999999988654322111000 0
Q ss_pred CcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeecccceec--CCCCeE-EEEE
Q 001567 188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL--GSGDAV-CASI 264 (1052)
Q Consensus 188 ~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~--gh~~~v-~va~ 264 (1052)
.......+.+|.-.|+++.... .+-...+++.+.|.++++||...+..+. --..++ ++++
T Consensus 163 ---------~~~p~~~f~~HtlsITDl~ig~--------Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~l 225 (476)
T KOG0646|consen 163 ---------SVKPLHIFSDHTLSITDLQIGS--------GGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVAL 225 (476)
T ss_pred ---------CccceeeeccCcceeEEEEecC--------CCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEE
Confidence 0001123456777888886422 1122467889999999999998876542 123445 9999
Q ss_pred cCCCCEEEEEeeCCeEEEEecCCCCc-e------eEEEEeecCCCCCCCCC--CeeEEEECCCCCEEEEEEcCCcEEEEE
Q 001567 265 APEQQILAVGTRRGVVELYDLAESAS-L------IRTVSLYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1052)
Q Consensus 265 spd~~~lAsgs~Dg~V~vwd~~~~~~-~------~~~l~~~~~~~~~~h~g--~V~~l~~SpDg~~Lasg~~Dg~v~vWd 335 (1052)
.|-.+.+.+|+++|.|.+.++..... . .....+.+.....+|.+ +|+|++.|-||..|++|+.||.|+|||
T Consensus 226 Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 226 DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 99999999999999999888754110 0 00011111222346988 999999999999999999999999999
Q ss_pred cCCCeEEEEecccccCceeeeeEcCC
Q 001567 336 VSGCRLMSTIRQISLSSISSPIVKPN 361 (1052)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~sp~ 361 (1052)
+.+.+++.++... .++|+.+.+.|-
T Consensus 306 i~S~Q~iRtl~~~-kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 306 IYSKQCIRTLQTS-KGPVTNLQINPL 330 (476)
T ss_pred cchHHHHHHHhhh-ccccceeEeecc
Confidence 9999998888743 567888877554
No 133
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.65 E-value=9.2e-16 Score=161.72 Aligned_cols=270 Identities=10% Similarity=0.079 Sum_probs=186.4
Q ss_pred CccceEEEcCCc-cEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEE
Q 001567 68 GENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (1052)
Q Consensus 68 G~~~~v~wSPDg-~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~ll 146 (1052)
..+.+++=.|.. +.+|+|+.||.|+|||+..-. ....+..+.+.|..+..+.+.++
T Consensus 67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~-----------------------~~~~f~AH~G~V~Gi~v~~~~~~ 123 (433)
T KOG0268|consen 67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE-----------------------CIRTFKAHEGLVRGICVTQTSFF 123 (433)
T ss_pred cccchhhcCcchhhhhhccccCceEEEEehhhhh-----------------------hhheeecccCceeeEEecccceE
Confidence 446677778877 789999999999999997322 12234566677888888888899
Q ss_pred EEecCCcEEEEeccCccccceeecccCCCCccceeec-ccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEE
Q 001567 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSH-HFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (1052)
Q Consensus 147 v~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~-~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (1052)
.++.|.+|..|..++.....+. +. +...-+. .+.++..++. |..+.+|......++.++.|-.+...++-
T Consensus 124 tvgdDKtvK~wk~~~~p~~til-----g~-s~~~gIdh~~~~~~FaTc---Ge~i~IWD~~R~~Pv~smswG~Dti~svk 194 (433)
T KOG0268|consen 124 TVGDDKTVKQWKIDGPPLHTIL-----GK-SVYLGIDHHRKNSVFATC---GEQIDIWDEQRDNPVSSMSWGADSISSVK 194 (433)
T ss_pred EecCCcceeeeeccCCcceeee-----cc-cccccccccccccccccc---CceeeecccccCCccceeecCCCceeEEe
Confidence 9999999999776664222111 00 0000111 1111112222 33455666677788888888776667777
Q ss_pred EeeCCc-EEEEEecCCceeeeeecccceecC--CCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCC
Q 001567 226 LYSNGQ-LMSCSVSKKGLKLAEFIKIDKELG--SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (1052)
Q Consensus 226 ~s~dG~-~~~~~~~d~~i~~w~~~~~~~~~g--h~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~ 301 (1052)
++|--. +++++..|+++-++|......+.. ..-.+ .++|||.+-.+++|.+|..+..||+..-..++....+
T Consensus 195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d---- 270 (433)
T KOG0268|consen 195 FNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD---- 270 (433)
T ss_pred cCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcc----
Confidence 777654 677777999999999987755421 12334 7899999888999999999999999864455555565
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEE
Q 001567 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQW 378 (1052)
Q Consensus 302 ~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W 378 (1052)
|...|.+|+|||.|+-+++||.|++|+|+.+..+..-.....-....|.++.+|-|. ++++||+ .+++|
T Consensus 271 ----hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds----kyi~SGSdd~nvRlW 342 (433)
T KOG0268|consen 271 ----HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS----KYIISGSDDGNVRLW 342 (433)
T ss_pred ----cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc----cEEEecCCCcceeee
Confidence 999999999999999999999999999999977642211111112446777777776 6666665 55666
Q ss_pred ecC
Q 001567 379 DEY 381 (1052)
Q Consensus 379 ~~~ 381 (1052)
-..
T Consensus 343 ka~ 345 (433)
T KOG0268|consen 343 KAK 345 (433)
T ss_pred ecc
Confidence 543
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.6e-16 Score=180.30 Aligned_cols=235 Identities=18% Similarity=0.262 Sum_probs=192.1
Q ss_pred ecCCceeeeeecccceecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEE
Q 001567 237 VSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW 315 (1052)
Q Consensus 237 ~~d~~i~~w~~~~~~~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~ 315 (1052)
..+..+++|+.... ..|..++ |+.+-..++.+++|+.|-.+-+|.+.. ...+..+.+ |.++|.||.|
T Consensus 11 ~~~t~Lr~~~~~~~---~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k-p~~i~S~~~--------hespIeSl~f 78 (825)
T KOG0267|consen 11 KRATKLRVWDTREF---VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK-PNAITSLTG--------HESPIESLTF 78 (825)
T ss_pred eeeeccccccchhh---hhhhhhhceeeeeccceeeccCCCceeeccccccC-Cchhheeec--------cCCcceeeec
Confidence 33444667776543 5688888 888877789999999999999999876 334445666 9999999999
Q ss_pred CCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCC
Q 001567 316 TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS 392 (1052)
Q Consensus 316 SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~ 392 (1052)
+++...|++|..||+|++||+..++.+.+|.+| ...+.++.|+|.+ ++.++|+ ..++||..-..+.....+|
T Consensus 79 ~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh-~~~~~sv~f~P~~----~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~ 153 (825)
T KOG0267|consen 79 DTSERLLAAGSASGTIKVWDLEEAKIVRTLTGH-LLNITSVDFHPYG----EFFASGSTDTDLKIWDIRKKGCSHTYKSH 153 (825)
T ss_pred CcchhhhcccccCCceeeeehhhhhhhhhhhcc-ccCcceeeeccce----EEeccccccccceehhhhccCceeeecCC
Confidence 999999999999999999999999999999998 7889999999999 8888887 7889999877788888787
Q ss_pred cccE--EEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEE
Q 001567 393 SERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAV 469 (1052)
Q Consensus 393 ~~~v--~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lav 469 (1052)
...+ ..|++ |+.+++++.|.++++||...|+- ...|.+|.++|.++.|+|..-.++.
T Consensus 154 ~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~--------------------~~ef~~~e~~v~sle~hp~e~Lla~ 213 (825)
T KOG0267|consen 154 TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL--------------------SKEFKSHEGKVQSLEFHPLEVLLAP 213 (825)
T ss_pred cceeEEEeecCCCceeeccCCcceeeeeccccccc--------------------ccccccccccccccccCchhhhhcc
Confidence 6655 67777 88999999999999999877764 6678899999999999999999999
Q ss_pred EeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEE
Q 001567 470 AGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVV 511 (1052)
Q Consensus 470 ag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~~~~li~ 511 (1052)
||.|+++ +||+.+ ..+.+...+|. .-+.+..+..+.-++
T Consensus 214 Gs~d~tv~f~dlet--fe~I~s~~~~~-~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 214 GSSDRTVRFWDLET--FEVISSGKPET-DGVRSLAFNPDGKIV 253 (825)
T ss_pred CCCCceeeeeccce--eEEeeccCCcc-CCceeeeecCCceee
Confidence 9999999 999964 23444433431 235666666554444
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.3e-14 Score=167.30 Aligned_cols=254 Identities=13% Similarity=0.172 Sum_probs=177.9
Q ss_pred ceEEEEeeCCeEEEEE-cCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecC
Q 001567 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (1052)
Q Consensus 22 ~~vv~fSpdg~llA~~-sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~ 100 (1052)
---|++-|+|.++.++ +++.|++|+...+. ..++++...|. ...+.+-++..+++++.+++|..|.+..+.
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-------e~P~ti~~~g~-~v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDE-------EEPETIDISGE-LVSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcc-------cCCchhhccCc-eeEEEeecccceEEeeccceEEEeeCCCCC
Confidence 3447799999998888 58899999986221 23344443343 234556678899999999999999987554
Q ss_pred ceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccce
Q 001567 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1052)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~ 180 (1052)
....+ . +..+ ...+.++..+|+.++.|++|-.|.++.-++....
T Consensus 88 ~~~iL----------~--------Rftl---p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~--------------- 131 (933)
T KOG1274|consen 88 EDTIL----------A--------RFTL---PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE--------------- 131 (933)
T ss_pred cccee----------e--------eeec---cceEEEEecCCcEEEeecCceeEEEEeccccchh---------------
Confidence 21110 0 0011 1235577778889999999998988766654322
Q ss_pred eecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee-------
Q 001567 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------- 253 (1052)
Q Consensus 181 ~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~------- 253 (1052)
..+.+++..|.++.| .|.|.++++.+.||.+++|+...+...
T Consensus 132 ---------------------~~lrgh~apVl~l~~----------~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~ 180 (933)
T KOG1274|consen 132 ---------------------KVLRGHDAPVLQLSY----------DPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD 180 (933)
T ss_pred ---------------------eeecccCCceeeeeE----------cCCCCEEEEEecCceEEEEEcccchhhhhcccCC
Confidence 123567888988887 566666777677777777776654321
Q ss_pred --cC--CCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC
Q 001567 254 --LG--SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (1052)
Q Consensus 254 --~g--h~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D 328 (1052)
.+ ....+ .++|+|++..+|+.+.|++|++|+... ......+.... +...+++++|||+|+|||+++.|
T Consensus 181 k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~------~ss~~~~~~wsPnG~YiAAs~~~ 253 (933)
T KOG1274|consen 181 KDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKL------SSSKFSDLQWSPNGKYIAASTLD 253 (933)
T ss_pred ccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC-ceeheeecccc------cccceEEEEEcCCCcEEeeeccC
Confidence 11 12344 779999999999999999999999887 77666666533 44449999999999999999999
Q ss_pred CcEEEEEcCCCeEEEEecccccCceeeeeEcCCC
Q 001567 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1052)
Q Consensus 329 g~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (1052)
|.|.|||+.+... +.. ...|.+.+|.|+.
T Consensus 254 g~I~vWnv~t~~~----~~~-~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 254 GQILVWNVDTHER----HEF-KRAVCCEAWKPNA 282 (933)
T ss_pred CcEEEEecccchh----ccc-cceeEEEecCCCC
Confidence 9999999987221 111 3557777777775
No 136
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=4.7e-14 Score=146.78 Aligned_cols=270 Identities=16% Similarity=0.163 Sum_probs=178.5
Q ss_pred CccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEe-ecCCeEE
Q 001567 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-SDNKHML 146 (1052)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~d~~~ll 146 (1052)
..+.++.|+|.++.|++++.||++++|++.....++. +. ...++.+.+ .+...++
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~-----------------------~~-~~~plL~c~F~d~~~~~ 69 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK-----------------------FK-HGAPLLDCAFADESTIV 69 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh-----------------------ee-cCCceeeeeccCCceEE
Confidence 4567999999999999999999999999975421111 11 112233332 3446789
Q ss_pred EEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEE
Q 001567 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1052)
Q Consensus 147 v~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (1052)
+|+-||.|+.++.+...... +..|...|.+|+|.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~-------------------------------------igth~~~i~ci~~~--------- 103 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ-------------------------------------IGTHDEGIRCIEYS--------- 103 (323)
T ss_pred EeccCceEEEEEecCCccee-------------------------------------eccCCCceEEEEee---------
Confidence 99999999998776543211 12456678888874
Q ss_pred eeCCcEEEEEecCCceeeeeeccccee--cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCC
Q 001567 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (1052)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~~~~~--~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~ 303 (1052)
+--..+++++-|+++++||....... ....+.| |+..+ +..|++|+.|..|.+||+.+-.... .....
T Consensus 104 -~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~-q~reS----- 174 (323)
T KOG1036|consen 104 -YEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPF-QRRES----- 174 (323)
T ss_pred -ccCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchh-hhccc-----
Confidence 33345778899999999998753222 2334567 77654 7789999999999999998722222 11110
Q ss_pred CCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCe----EEEEecccccCceeeeeEcCCCCCCccceeeeeeeeEEe
Q 001567 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR----LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD 379 (1052)
Q Consensus 304 ~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~----l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~ 379 (1052)
.-.-.+.||+.-|++.-.|+++-||.|.|=.+.... ....++.|... .
T Consensus 175 -~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~--------~------------------- 226 (323)
T KOG1036|consen 175 -SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLS--------E------------------- 226 (323)
T ss_pred -cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecc--------c-------------------
Confidence 134568999999999999999999999886665441 11222222100 0
Q ss_pred cCCceEEEEecCCcccE--EEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEE
Q 001567 380 EYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (1052)
Q Consensus 380 ~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~ 456 (1052)
++.+++. .| ++|++ -+.++||+.||-+.+|+....+. ...+..-...|-
T Consensus 227 -~~~~~~y-------PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr--------------------l~q~~~~~~SI~ 278 (323)
T KOG1036|consen 227 -KDTEIIY-------PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR--------------------LKQLAKYETSIS 278 (323)
T ss_pred -CCceEEE-------EeceeEeccccceEEecCCCceEEEccCcchhh--------------------hhhccCCCCceE
Confidence 0111111 12 44555 56789999999999999754332 223333345699
Q ss_pred EEEEccCCCEEEEEeC
Q 001567 457 HVAASKDGMFLAVAGL 472 (1052)
Q Consensus 457 ~va~SpdG~~lavag~ 472 (1052)
+++|+.||..||+|+.
T Consensus 279 slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 279 SLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEeccCCCeEEEEec
Confidence 9999999999999985
No 137
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=2.7e-15 Score=171.74 Aligned_cols=254 Identities=16% Similarity=0.262 Sum_probs=172.8
Q ss_pred EEEEeeCCeEEEEEcCCcEEEeecCCcee---EEEEEecChhhhhhcCccceEEEcC-CccEEEEEeCCcEEEEEEEEec
Q 001567 24 IIYFKVNNGLLLIASPCHIELWSSSQHKV---RLGKYKRDSESVQREGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQIT 99 (1052)
Q Consensus 24 vv~fSpdg~llA~~sd~~v~IW~~~~~~~---~l~~~~r~~~sl~~~G~~~~v~wSP-Dg~~Lav~t~dg~l~i~~l~~~ 99 (1052)
.|...+|...++.++...+.|+-.+ +.. +.....+... ..+-....|+|.. +++.||++++.|.|.+||+...
T Consensus 44 AIs~nr~~~qiv~AGrs~lklyai~-~~~~~~~~~~~~k~kq--n~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 44 AISVNRDINQIVVAGRSLLKLYAIN-PNDFSEKCNHRFKTKQ--NKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred eEeecCCcceeEEecccceeeEeeC-cccCCcceeeeccccc--ceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 3555577788999999999999876 321 2222212211 2334456789975 6678999999999999999742
Q ss_pred C-cee-ecCCCCCCCceeeeEeeeeccccccccccceEEEE--ee-cCCeEEEEecCCcEEEEeccCccccceeecccCC
Q 001567 100 E-KSI-QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VS-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSN 174 (1052)
Q Consensus 100 ~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~-d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~ 174 (1052)
. +++ +. +..+.-.+.++ .+ ....++.|+.||.|..|+..... ...
T Consensus 121 ~rnk~l~~----------------------f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~--S~~------ 170 (839)
T KOG0269|consen 121 IRNKLLTV----------------------FNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK--SKS------ 170 (839)
T ss_pred ccchhhhH----------------------hhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc--ccc------
Confidence 2 111 11 11122223332 22 23567888999999985544322 110
Q ss_pred CCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee-
Q 001567 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE- 253 (1052)
Q Consensus 175 ~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~- 253 (1052)
........|+++.|+|.. +..++++.+.|.+++||+..+.++
T Consensus 171 ----------------------------t~~~nSESiRDV~fsp~~---------~~~F~s~~dsG~lqlWDlRqp~r~~ 213 (839)
T KOG0269|consen 171 ----------------------------TFRSNSESIRDVKFSPGY---------GNKFASIHDSGYLQLWDLRQPDRCE 213 (839)
T ss_pred ----------------------------cccccchhhhceeeccCC---------CceEEEecCCceEEEeeccCchhHH
Confidence 112234568888887744 666777777888899999877654
Q ss_pred ---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCc--eeEEEEeecCCCCCCCCCCeeEEEECCCCC-EEEEEE
Q 001567 254 ---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW 326 (1052)
Q Consensus 254 ---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~--~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~-~Lasg~ 326 (1052)
..|.++| |+.|+|++.+||+|+.|++|+||++.+ .+ .+.++. -..+|.+|+|.|+.+ .||+++
T Consensus 214 ~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~-~~~~~~~tIn---------Tiapv~rVkWRP~~~~hLAtcs 283 (839)
T KOG0269|consen 214 KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD-SRAKPKHTIN---------TIAPVGRVKWRPARSYHLATCS 283 (839)
T ss_pred HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccC-CCccceeEEe---------ecceeeeeeeccCccchhhhhh
Confidence 6899999 999999999999999999999999986 43 344443 257899999999754 777765
Q ss_pred --cCCcEEEEEcCCC-eEEEEecccccCceeeeeE
Q 001567 327 --KSRGLTVWSVSGC-RLMSTIRQISLSSISSPIV 358 (1052)
Q Consensus 327 --~Dg~v~vWd~~~~-~l~~tl~~~~~~~v~s~~~ 358 (1052)
.|-.|.|||+... -+..++..| ...++.++|
T Consensus 284 mv~dtsV~VWDvrRPYIP~~t~~eH-~~~vt~i~W 317 (839)
T KOG0269|consen 284 MVVDTSVHVWDVRRPYIPYATFLEH-TDSVTGIAW 317 (839)
T ss_pred ccccceEEEEeeccccccceeeecc-Cccccceec
Confidence 4789999999754 345677777 555555555
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.8e-14 Score=154.98 Aligned_cols=273 Identities=15% Similarity=0.174 Sum_probs=184.4
Q ss_pred eEEEE--eecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccE
Q 001567 134 SVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (1052)
Q Consensus 134 ~v~~i--~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i 211 (1052)
.|+++ .+....+++++-||.++++..|++.+...
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~l-------------------------------------------- 250 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKL-------------------------------------------- 250 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhh--------------------------------------------
Confidence 45554 45567788899999999999998775432
Q ss_pred EEEEecCCcceEEEEeeCCc-EEEEEecCCceeeeeeccccee-----cCCC-CeE-EEEEcCCCCEEEEEeeCCeEEEE
Q 001567 212 IWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE-----LGSG-DAV-CASIAPEQQILAVGTRRGVVELY 283 (1052)
Q Consensus 212 ~~i~~~~~~~~~~~~s~dG~-~~~~~~~d~~i~~w~~~~~~~~-----~gh~-~~v-~va~spd~~~lAsgs~Dg~V~vw 283 (1052)
.++.+.......+.|.|+|+ .+++++...-...||..+.+.. .|+. ..+ ...+||++++||..+..|-|.+-
T Consensus 251 qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lL 330 (514)
T KOG2055|consen 251 QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLL 330 (514)
T ss_pred eeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEee
Confidence 22222222223356788998 6777776777778998766532 3554 345 88999999999999999999999
Q ss_pred ecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCC
Q 001567 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 363 (1052)
Q Consensus 284 d~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~ 363 (1052)
...+ ++++.+++. .|.|..++|+.||+.|.+.+.+|.|.+||+....++..+...|.-.-++++.++++
T Consensus 331 hakT-~eli~s~Ki---------eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng- 399 (514)
T KOG2055|consen 331 HAKT-KELITSFKI---------EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNG- 399 (514)
T ss_pred hhhh-hhhhheeee---------ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCC-
Confidence 9887 888888886 89999999999999999999999999999999988888876544445678888988
Q ss_pred CCccceeeee---eeeEEecCCc------eEEEEecCCcccE--EEEec-cceeeeeccC--CceeeeEeeecCceEEEE
Q 001567 364 CKYEPLMSGT---SMMQWDEYGY------RLYAIEEGSSERV--LIFSF-GKCCLNRGVS--GMTYARQVIYGEDRLLVV 429 (1052)
Q Consensus 364 ~~~~~l~sg~---~~~~W~~~~~------~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d--~~v~~w~~~~~~~~l~~~ 429 (1052)
.++++|+ -+-+++.++. +.+.+...-...| ++|+. ++.++.+|.- ..+++-.+ ....+ +
T Consensus 400 ---~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv--PS~TV--F 472 (514)
T KOG2055|consen 400 ---SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV--PSCTV--F 472 (514)
T ss_pred ---ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec--cceee--e
Confidence 8999998 4455553321 1222211112234 33444 4444433322 22222111 11100 0
Q ss_pred ecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEcc
Q 001567 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (1052)
Q Consensus 430 ~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~ 481 (1052)
. +.|.. ...-+.|+|++|||.|.++|+|...|.+ +|.+.
T Consensus 473 ----------s--NfP~~-n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 473 ----------S--NFPTS-NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ----------c--cCCCC-CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 0 01111 1112348999999999999999999999 99763
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.64 E-value=2.5e-13 Score=151.61 Aligned_cols=272 Identities=11% Similarity=0.088 Sum_probs=168.0
Q ss_pred eEEEEE-cCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEE-EEEeCCcEEEEEEEEecCceeecCCCC
Q 001567 32 GLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLI-AVVTSSLYLHIFKVQITEKSIQIGGKQ 109 (1052)
Q Consensus 32 ~llA~~-sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~L-av~t~dg~l~i~~l~~~~~~~~~~~~~ 109 (1052)
.+|++. .++.+.+||.. .+..+..+. ..+.+..++|+|||+.+ ++++.++.|++||+..+........
T Consensus 2 ~~~~s~~~d~~v~~~d~~-t~~~~~~~~-------~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-- 71 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTA-TLEVTRTFP-------VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS-- 71 (300)
T ss_pred cEEEEecCCCEEEEEECC-CCceEEEEE-------CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC--
Confidence 467776 47899999985 443333332 12334679999999977 5567789999999874432110100
Q ss_pred CCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEe-cCCcEEEEeccCccccceeecccCCCCccceeecccCCC
Q 001567 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN 188 (1052)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t-~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~ 188 (1052)
.......++.++++.+++++ .++.+.+| +........ .
T Consensus 72 --------------------~~~~~~~~~~~~g~~l~~~~~~~~~l~~~--d~~~~~~~~------------~------- 110 (300)
T TIGR03866 72 --------------------GPDPELFALHPNGKILYIANEDDNLVTVI--DIETRKVLA------------E------- 110 (300)
T ss_pred --------------------CCCccEEEECCCCCEEEEEcCCCCeEEEE--ECCCCeEEe------------E-------
Confidence 01112335667777776664 46777664 432211110 0
Q ss_pred cceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCc-eeeeeeccccee---cCCCCeEEEEE
Q 001567 189 GLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG-LKLAEFIKIDKE---LGSGDAVCASI 264 (1052)
Q Consensus 189 ~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~-i~~w~~~~~~~~---~gh~~~v~va~ 264 (1052)
...+..+.. ++++|||+.++++..+.. +..|+....+.. .....+.+++|
T Consensus 111 ----------------~~~~~~~~~----------~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 164 (300)
T TIGR03866 111 ----------------IPVGVEPEG----------MAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEF 164 (300)
T ss_pred ----------------eeCCCCcce----------EEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEE
Confidence 000011122 456889998888776643 455676544332 11123338999
Q ss_pred cCCCCEEEEE-eeCCeEEEEecCCCCceeEEEEeecCCCCCCCCC--CeeEEEECCCCCEEEEE-EcCCcEEEEEcCCCe
Q 001567 265 APEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG--PVSCIAWTPDNSAFAVG-WKSRGLTVWSVSGCR 340 (1052)
Q Consensus 265 spd~~~lAsg-s~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g--~V~~l~~SpDg~~Lasg-~~Dg~v~vWd~~~~~ 340 (1052)
+|++++++++ ..+|.|++||+++ ++.+..+.....+ .+.+ ....++|+|||+.++++ +.++.+.+||+.+++
T Consensus 165 s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~---~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 165 TADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPG---VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred CCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccc---cccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 9999988654 4699999999987 6655555431000 0111 23468999999986554 456789999999887
Q ss_pred EEEEecccccCceeeeeEcCCCCCCccceeeee----eeeEEecCCceEEEEec
Q 001567 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEE 390 (1052)
Q Consensus 341 l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~ 390 (1052)
....+..+ ..+.+++|+|++ +.++++. ++++|+.++++++....
T Consensus 241 ~~~~~~~~--~~~~~~~~~~~g----~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 241 VLDYLLVG--QRVWQLAFTPDE----KYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEEEEEeC--CCcceEEECCCC----CEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 77665432 358889999998 6665542 79999999888766553
No 140
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.3e-14 Score=159.63 Aligned_cols=284 Identities=18% Similarity=0.235 Sum_probs=176.7
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCC--EEEEEEcCCc
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRG 330 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~--~Lasg~~Dg~ 330 (1052)
.||++.| |+++.|.|.+||+|+.||+||||.+.+ +.+++++.. .+.|.||+|+|.+. .||++-...
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~~---------d~~I~~vaw~P~~~~~vLAvA~~~~- 465 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQF---------DSEIRSVAWNPLSDLCVLAVAVGEC- 465 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEee---------cceeEEEEecCCCCceeEEEEecCc-
Confidence 6999999 999999999999999999999999998 999998876 67899999999764 777777655
Q ss_pred EEEEEc-CCCeEEEEecccccCceeeeeEcCCCCCCccceeee-------eeeeEEecCC----ceEEEEecCCcccEEE
Q 001567 331 LTVWSV-SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-------TSMMQWDEYG----YRLYAIEEGSSERVLI 398 (1052)
Q Consensus 331 v~vWd~-~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg-------~~~~~W~~~~----~~l~~~~~~~~~~v~~ 398 (1052)
+.|-+. .|-++..... .+.+.++ .++..|.... ..-+.+.-.|...|.+
T Consensus 466 ~~ivnp~~G~~~e~~~t-------------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~ 526 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPT-------------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ 526 (733)
T ss_pred eEEeCccccchhhhcch-------------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce
Confidence 555544 3322111000 0122221 1556787541 1112233346677777
Q ss_pred Eec---cceeeeeccCCc---eeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeC
Q 001567 399 FSF---GKCCLNRGVSGM---TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (1052)
Q Consensus 399 ~s~---~k~~~s~s~d~~---v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~ 472 (1052)
+++ |+++++.+.++. +.++++..... |.|. ....+-|.++.|+|.-.++.+|++
T Consensus 527 vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s------------------Q~PF--~kskG~vq~v~FHPs~p~lfVaTq 586 (733)
T KOG0650|consen 527 VTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS------------------QSPF--RKSKGLVQRVKFHPSKPYLFVATQ 586 (733)
T ss_pred eeeecCCceEEEeccCCCcceEEEEecccccc------------------cCch--hhcCCceeEEEecCCCceEEEEec
Confidence 776 889998888764 33444333222 2343 334567999999999999999999
Q ss_pred CceEEEEccCCcEEEecCccceeeeEEEEEEE--eCCEEEEEEEecCCCeEEEEEeeC--C--CCCCcceeEEeecCCcc
Q 001567 473 HGLILYDIRQKKWRVFGDITQEQKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPR--Y--HLDQSSLLCRKSLLAKP 546 (1052)
Q Consensus 473 dG~ilwd~~s~~w~~f~~~~~e~~~~v~gl~W--~~~~li~~~~~~~~~~~elrly~~--~--~ld~~~~l~~~~~~~~~ 546 (1052)
....+||+..+..- ........-+.+|.- .|+.+|++++...-.++.+.+-+. . .+....+.
T Consensus 587 ~~vRiYdL~kqelv---KkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr--------- 654 (733)
T KOG0650|consen 587 RSVRIYDLSKQELV---KKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVR--------- 654 (733)
T ss_pred cceEEEehhHHHHH---HHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhh---------
Confidence 99889998764310 000111122333433 478999996665444444444322 0 11111111
Q ss_pred EEEEeeCCE--EEEEEcCCeEEEEEEEEecccCCCCCCceEEEEEEE-------EeeecccCCCc
Q 001567 547 IVMDVYEDY--ILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRE-------LSIMTAKSHPA 602 (1052)
Q Consensus 547 ~~~s~~~~~--llv~~~d~~i~l~~~~~~~~~~~~~~~~i~l~~~~~-------i~~~~~~~hp~ 602 (1052)
.+.....+ +.+++.|+++.||+-.+..++ ..+|.|.+...-+ +-+.+.++||.
T Consensus 655 -~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl--~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~ 716 (733)
T KOG0650|consen 655 -SVAFHKRYPLFASGSDDGTVIVFHGMVYNDL--LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPR 716 (733)
T ss_pred -hhhhccccceeeeecCCCcEEEEeeeeehhh--hcCCceEeeeeccCceeecccceEeecccCC
Confidence 12222233 333677899999999888776 5678887643222 22455566664
No 141
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.61 E-value=4e-13 Score=149.94 Aligned_cols=224 Identities=13% Similarity=0.162 Sum_probs=153.3
Q ss_pred EEEeeCCcEE-EEEecCCceeeeeeccccee---cCCCCeEEEEEcCCCCEEEEE-eeCCeEEEEecCCCCceeEEEEee
Q 001567 224 FVLYSNGQLM-SCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLY 298 (1052)
Q Consensus 224 ~~~s~dG~~~-~~~~~d~~i~~w~~~~~~~~---~gh~~~v~va~spd~~~lAsg-s~Dg~V~vwd~~~~~~~~~~l~~~ 298 (1052)
++++|||+.+ +++..++.+++|+...++.. ..+.+...++++|+++.++++ +.|++|++||+.+ .+.+..+..
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~~- 113 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAEIPV- 113 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeEeeC-
Confidence 4568899865 55667889999998765432 233344488999999977654 5689999999987 555555442
Q ss_pred cCCCCCCCCCCeeEEEECCCCCEEEEEEcCC-cEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccce-eee---e
Q 001567 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSG---T 373 (1052)
Q Consensus 299 ~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg-~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l-~sg---~ 373 (1052)
...+.+++|+|||+.++++..++ .+.+||..++.....+... ....+++|+|++ +.+ +++ .
T Consensus 114 --------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~~~ 179 (300)
T TIGR03866 114 --------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD--QRPRFAEFTADG----KELWVSSEIGG 179 (300)
T ss_pred --------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC--CCccEEEECCCC----CEEEEEcCCCC
Confidence 23468899999999999998875 4677899887776554332 235678899998 655 343 2
Q ss_pred eeeEEecCCceEEEEecCC-----cccE----EEEec-ccee-eeeccCCceeeeEeeecCceEEEEecCCcchheeeee
Q 001567 374 SMMQWDEYGYRLYAIEEGS-----SERV----LIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (1052)
Q Consensus 374 ~~~~W~~~~~~l~~~~~~~-----~~~v----~~~s~-~k~~-~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~ 442 (1052)
.+.+|+.+++++......+ ...+ +.+++ ++.+ ++.+.++.+.+|++..++..
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~----------------- 242 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL----------------- 242 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-----------------
Confidence 7899999988776544211 1111 44555 5553 34455667888876543221
Q ss_pred ccCcccccCCCcEEEEEEccCCCEEEEE-eCCceE-EEEccCCc
Q 001567 443 NLPVSYISQNWPVQHVAASKDGMFLAVA-GLHGLI-LYDIRQKK 484 (1052)
Q Consensus 443 ~~p~~~~~h~~~V~~va~SpdG~~lava-g~dG~i-lwd~~s~~ 484 (1052)
....+...+.+++|+|+|++|+++ +.+|.+ +||+.+++
T Consensus 243 ----~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 243 ----DYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred ----EEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 111223468899999999999987 468999 99999876
No 142
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.9e-13 Score=142.33 Aligned_cols=262 Identities=13% Similarity=0.174 Sum_probs=183.1
Q ss_pred EEEeeCCeEEEEE-cCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCcee
Q 001567 25 IYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (1052)
Q Consensus 25 v~fSpdg~llA~~-sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~ 103 (1052)
+.|+|.+..|.++ =|++++++++... ... ..+.+.++.++.+|.++ ..+++|+-||.|+.||+.++...+
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~-~l~-------~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPAN-SLK-------LKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccch-hhh-------hheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCccee
Confidence 7899887655555 5999999999622 111 22456688999999986 688999999999999998665321
Q ss_pred ecCCCCCCCceeeeEeeeeccccccccccceEEEEeec--CCeEEEEecCCcEEEEeccCccccceeecccCCCCcccee
Q 001567 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (1052)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d--~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~ 181 (1052)
+..+...+.|+... .+.++.|+.|+.|.. ||+......
T Consensus 90 ------------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~--wD~R~~~~~-------------- 129 (323)
T KOG1036|consen 90 ------------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKF--WDPRNKVVV-------------- 129 (323)
T ss_pred ------------------------eccCCCceEEEEeeccCCeEEEcccCccEEE--Eeccccccc--------------
Confidence 22334456676544 567889999999987 665431110
Q ss_pred ecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee-----cCC
Q 001567 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGS 256 (1052)
Q Consensus 182 i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-----~gh 256 (1052)
........|.++ +-.|..++++..+..+.+||..+.... ..-
T Consensus 130 ---------------------~~~d~~kkVy~~------------~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l 176 (323)
T KOG1036|consen 130 ---------------------GTFDQGKKVYCM------------DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL 176 (323)
T ss_pred ---------------------cccccCceEEEE------------eccCCEEEEeecCceEEEEEcccccchhhhccccc
Confidence 001112244433 456888888888999999998764322 223
Q ss_pred CCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCC---ceeEEEEeecCC-CCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 001567 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESA---SLIRTVSLYDWG-YSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (1052)
Q Consensus 257 ~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~---~~~~~l~~~~~~-~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v 331 (1052)
.-.+ |++..|++.=.|+++-||.|.+=.+++.. +....++-+... -...---||++|+|+|--..||||+.||.|
T Consensus 177 kyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V 256 (323)
T KOG1036|consen 177 KYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIV 256 (323)
T ss_pred eeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceE
Confidence 3457 99999998889999999999887776521 112233321100 001123479999999998999999999999
Q ss_pred EEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee
Q 001567 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1052)
Q Consensus 332 ~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (1052)
.+||.+..+.++.+... ..+|.+++|+-+| ..++.++
T Consensus 257 ~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG----~~LAia~ 293 (323)
T KOG1036|consen 257 NIWDLFNRKRLKQLAKY-ETSISSLSFSMDG----SLLAIAS 293 (323)
T ss_pred EEccCcchhhhhhccCC-CCceEEEEeccCC----CeEEEEe
Confidence 99999999888888776 5679999999988 6776443
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.59 E-value=1.3e-13 Score=141.78 Aligned_cols=289 Identities=16% Similarity=0.189 Sum_probs=179.7
Q ss_pred ceEEEEeec---CCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCc
Q 001567 133 LSVSNIVSD---NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISS 209 (1052)
Q Consensus 133 ~~v~~i~~d---~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~ 209 (1052)
++|.++.-+ +.+++.|..||.+.+++.......... ..-+...++ + .+.+-..|+-
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s--~li~k~~c~--v-----------------~~~h~~~Hky 102 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS--GLIAKHKCI--V-----------------AKQHENGHKY 102 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhc--cceeheeee--c-----------------cccCCcccee
Confidence 445444433 568999999999988665433311110 000000000 0 0111234555
Q ss_pred cEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee--cCCCCeE-EEEEcC---CCCEEEEEeeCCeEEEE
Q 001567 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAP---EQQILAVGTRRGVVELY 283 (1052)
Q Consensus 210 ~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~gh~~~v-~va~sp---d~~~lAsgs~Dg~V~vw 283 (1052)
.|.++.|.| -|--++.+++-|.++++||..+.+.. ..-.+.| +-++|| ...+||+|..|-.|++.
T Consensus 103 ~iss~~WyP---------~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLC 173 (397)
T KOG4283|consen 103 AISSAIWYP---------IDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLC 173 (397)
T ss_pred eeeeeEEee---------ecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence 666665533 34456677788999999999876543 2234556 667777 46799999999999999
Q ss_pred ecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCC-EEEEEEcCCcEEEEEcCCC-eEEEEeccc-------------
Q 001567 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGC-RLMSTIRQI------------- 348 (1052)
Q Consensus 284 d~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~-~Lasg~~Dg~v~vWd~~~~-~l~~tl~~~------------- 348 (1052)
|+.. |...+++++ |++.|.+|.|||... .||+|+.||.|++||+... .++.++..|
T Consensus 174 Di~S-Gs~sH~LsG--------Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~a 244 (397)
T KOG4283|consen 174 DIAS-GSFSHTLSG--------HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTA 244 (397)
T ss_pred eccC-Ccceeeecc--------ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccc
Confidence 9998 999999999 999999999999765 7899999999999999643 345555443
Q ss_pred ccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecC---CcccE-EEEeccceeeeeccCCceeeeEeee
Q 001567 349 SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG---SSERV-LIFSFGKCCLNRGVSGMTYARQVIY 421 (1052)
Q Consensus 349 ~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~---~~~~v-~~~s~~k~~~s~s~d~~v~~w~~~~ 421 (1052)
+.+.|++++|..++ ..+++.. .++.|+.+.|+--....+ |..++ ..+. +. +.|..+.+ +..
T Consensus 245 h~gkvngla~tSd~----~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-----~~-~~~s~vfv--~~p 312 (397)
T KOG4283|consen 245 HYGKVNGLAWTSDA----RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-----IQ-SMDSDVFV--LFP 312 (397)
T ss_pred ccceeeeeeecccc----hhhhhccCccceEEeecccCcccccccccccccccccceEE-----Ee-ecccceEE--EEe
Confidence 24567888888887 5555444 788998876653222111 11111 1111 11 11221211 111
Q ss_pred cCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEc
Q 001567 422 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1052)
Q Consensus 422 ~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~ 480 (1052)
.++.++++.-.+.. ....+..|-..|.+.++-||=+...+|..||.+ .|..
T Consensus 313 ~~~~lall~~~sgs--------~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 313 NDGSLALLNLLEGS--------FVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCCeEEEEEccCce--------EEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 12323322211111 123345676779999999999999999999999 8876
No 144
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.57 E-value=2.6e-13 Score=141.95 Aligned_cols=220 Identities=12% Similarity=0.183 Sum_probs=154.6
Q ss_pred EEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCC-CEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCC
Q 001567 232 LMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (1052)
Q Consensus 232 ~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~-~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h 306 (1052)
+++.++.-|-|++.|..+.+.. .||.+++ .+.+.|+. +++.+||.|.+||+|++++ ..++..+.+.+ +|
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~-~~Cv~VfGG~e-----gH 180 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT-DVCVAVFGGVE-----GH 180 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC-CeEEEEecccc-----cc
Confidence 5566667788899888876543 7999999 99999964 7899999999999999998 88888776643 59
Q ss_pred CCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEec---------------------------ccccCceeeeeEc
Q 001567 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR---------------------------QISLSSISSPIVK 359 (1052)
Q Consensus 307 ~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~---------------------------~~~~~~v~s~~~s 359 (1052)
.+.|.++.|++||.++||++.|..+++|++...+....++ ..|...|.+++|-
T Consensus 181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 9999999999999999999999999999997432211111 0012223333321
Q ss_pred CCCCCCccceeeee---eeeEEecCCc-eE-------------EEEecCCcccE----EEEec-cceeeeeccCCceeee
Q 001567 360 PNQDCKYEPLMSGT---SMMQWDEYGY-RL-------------YAIEEGSSERV----LIFSF-GKCCLNRGVSGMTYAR 417 (1052)
Q Consensus 360 p~~~~~~~~l~sg~---~~~~W~~~~~-~l-------------~~~~~~~~~~v----~~~s~-~k~~~s~s~d~~v~~w 417 (1052)
- +++.|-+ .+..|-+... +- +....-....+ ..|++ .+.++.|+..|.+.+|
T Consensus 261 g------d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 261 G------DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred h------hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 1 3444433 7888987321 11 11111112223 33344 8899999999999999
Q ss_pred EeeecCceEEEEecCCcchheeeeeccCcccc--cCCCcEEEEEEccCCCEEEEEeCCceE-EEEcc
Q 001567 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYI--SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (1052)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~--~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~ 481 (1052)
++...+.. .+ .++. .....|++.+||.||..|+....||++ -||..
T Consensus 335 dL~~~ep~-----------------~~-ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 335 DLDNNEPP-----------------KC-TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ECCCCCCc-----------------cC-ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 98765541 01 1111 224569999999999999999999999 88854
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.3e-13 Score=140.05 Aligned_cols=246 Identities=13% Similarity=0.096 Sum_probs=165.1
Q ss_pred EEeeCCcEEEEEecCCceeeeeecccc-------eecCCCCeE-EEEEcCC--CCEEEEEeeCCeEEEEecCCC-----C
Q 001567 225 VLYSNGQLMSCSVSKKGLKLAEFIKID-------KELGSGDAV-CASIAPE--QQILAVGTRRGVVELYDLAES-----A 289 (1052)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~w~~~~~~-------~~~gh~~~v-~va~spd--~~~lAsgs~Dg~V~vwd~~~~-----~ 289 (1052)
.+..-|+.+++++.|.++++||..... .|..|.++| .+.|.+- |+.+|++|.|++++||.-... +
T Consensus 20 s~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~ 99 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHG 99 (361)
T ss_pred eecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccccc
Confidence 346779999999999999999954221 247899999 8888653 899999999999999986321 1
Q ss_pred -cee--EEEEeecCCCCCCCCCCeeEEEECC--CCCEEEEEEcCCcEEEEEcCCCeE------EEEec------ccccCc
Q 001567 290 -SLI--RTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRL------MSTIR------QISLSS 352 (1052)
Q Consensus 290 -~~~--~~l~~~~~~~~~~h~g~V~~l~~Sp--Dg~~Lasg~~Dg~v~vWd~~~~~l------~~tl~------~~~~~~ 352 (1052)
+-+ .++.. ..+.|++|.|.| -|-.||+++.||+++|++.....- ...+. +.....
T Consensus 100 ~~Wv~~ttl~D--------srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~ 171 (361)
T KOG2445|consen 100 RRWVRRTTLVD--------SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP 171 (361)
T ss_pred ceeEEEEEeec--------CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence 111 12222 678999999999 488999999999999998754321 11222 111344
Q ss_pred eeeeeEcCCCCCCccceeeee--------eeeEEecC-Cc-eE--EEEecCCcccEEEEec----c---ceeeeeccCCc
Q 001567 353 ISSPIVKPNQDCKYEPLMSGT--------SMMQWDEY-GY-RL--YAIEEGSSERVLIFSF----G---KCCLNRGVSGM 413 (1052)
Q Consensus 353 v~s~~~sp~~~~~~~~l~sg~--------~~~~W~~~-~~-~l--~~~~~~~~~~v~~~s~----~---k~~~s~s~d~~ 413 (1052)
..++.++|.. ...+.++-|+ .+.+|... ++ +. +..+.+|.+.|..++| | ..+++++.||
T Consensus 172 ~~CvsWn~sr-~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg- 249 (361)
T KOG2445|consen 172 CFCVSWNPSR-MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG- 249 (361)
T ss_pred ceEEeecccc-ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-
Confidence 5566666542 2224555554 56677543 33 33 2334688888855555 3 3678899999
Q ss_pred eeeeEeeecCceEEEEecCCcchh-eeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEcc
Q 001567 414 TYARQVIYGEDRLLVVQSEDTDEL-KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (1052)
Q Consensus 414 v~~w~~~~~~~~l~~~~~~~~~~~-~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~ 481 (1052)
+++|.+......+ ...+...+.. .=..++....+.+|+++|..+.|+-.|..|++.|.||.+ +|..+
T Consensus 250 v~I~~v~~~~s~i-~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 250 VRIFKVKVARSAI-EEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEEEEeeccchh-hhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999876433222 0011111111 112334456788999999999999999999999999999 99764
No 146
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=9.5e-13 Score=136.81 Aligned_cols=152 Identities=13% Similarity=0.211 Sum_probs=112.9
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCC-
Q 001567 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC- 339 (1052)
Q Consensus 261 ~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~- 339 (1052)
|..|.+.|++|.+|..-|.+.+|+..+ .+++..++.. ....|..+.++-.|++|+.-..|+.|+.++...-
T Consensus 158 ~~~fdr~g~yIitGtsKGkllv~~a~t-~e~vas~rit-------s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 158 HGVFDRRGKYIITGTSKGKLLVYDAET-LECVASFRIT-------SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred cccccCCCCEEEEecCcceEEEEecch-heeeeeeeec-------hheeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence 457899999999999999999999988 7777777661 2367999999999999999999999999998521
Q ss_pred ------eE--EEEeccc-ccCceeeeeEcCCCCCCccceeeee----eeeEEecCCceEEEEecCCccc-EE--EEeccc
Q 001567 340 ------RL--MSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSER-VL--IFSFGK 403 (1052)
Q Consensus 340 ------~l--~~tl~~~-~~~~v~s~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~~~~~-v~--~~s~~k 403 (1052)
.+ .+.++.- ....-+.+.|+.+| +++..|+ .+.+|....|.|+.++.|..+. ++ .+.+.+
T Consensus 230 ~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg----eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~r 305 (405)
T KOG1273|consen 230 DEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG----EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVR 305 (405)
T ss_pred ccCccCCcChhHHHHHHHhhhhhhheeecCCc----cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccce
Confidence 11 1111110 01123467888888 8887776 6789999999999999887743 43 455555
Q ss_pred eeeeeccCCceeeeEeeecCc
Q 001567 404 CCLNRGVSGMTYARQVIYGED 424 (1052)
Q Consensus 404 ~~~s~s~d~~v~~w~~~~~~~ 424 (1052)
.++..-..|++++|...+-+.
T Consensus 306 p~i~si~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 306 PIIASIASGVVYIWAVVQVEN 326 (405)
T ss_pred eeeeeccCCceEEEEeecccc
Confidence 555555788999999776544
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=9.6e-13 Score=136.68 Aligned_cols=273 Identities=15% Similarity=0.157 Sum_probs=169.3
Q ss_pred CccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEee----cCC
Q 001567 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS----DNK 143 (1052)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~----d~~ 143 (1052)
.-+.++.|-+-|+++|++++|++++|||...+.. -|...- ....++++|..+.. -|+
T Consensus 14 DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-------------~W~~Ts------~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 14 DLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-------------TWSCTS------SWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred ceeeeeeecccCceeeeccCCCcEEEEeccCCCC-------------ceEEee------eEEecCCcEEEEEecCccccc
Confidence 3356899999999999999999999999753321 111100 01233444544432 256
Q ss_pred eEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceE
Q 001567 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1052)
Q Consensus 144 ~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (1052)
-+++++-|+++.+ |+... .... ....+| .....+.+..+.|+++.|.|.-
T Consensus 75 vvA~cS~Drtv~i--WEE~~-~~~~-------~~~~~W-----------------v~~ttl~DsrssV~DV~FaP~h--- 124 (361)
T KOG2445|consen 75 VVATCSYDRTVSI--WEEQE-KSEE-------AHGRRW-----------------VRRTTLVDSRSSVTDVKFAPKH--- 124 (361)
T ss_pred eEEEEecCCceee--eeecc-cccc-------ccccee-----------------EEEEEeecCCcceeEEEecchh---
Confidence 6778888999988 55321 1110 000111 1123345677889999987743
Q ss_pred EEEeeCCcEEEEEecCCceeeeeecccce---e-------------cCCCCeE-EEEEcCC---CCEEEEEeeC-----C
Q 001567 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK---E-------------LGSGDAV-CASIAPE---QQILAVGTRR-----G 278 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~---~-------------~gh~~~v-~va~spd---~~~lAsgs~D-----g 278 (1052)
-|-.+++++.|+.+|+++...+.. | ..+..+. |++|+|. ..+||+|+.+ +
T Consensus 125 -----lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~ 199 (361)
T KOG2445|consen 125 -----LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLN 199 (361)
T ss_pred -----cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCcccc
Confidence 344555566666666665432211 1 1233444 9999984 5789999977 5
Q ss_pred eEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCC-C---CEEEEEEcCCcEEEEEcCCCeEEEEecccccCcee
Q 001567 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-N---SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSIS 354 (1052)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpD-g---~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~ 354 (1052)
.++||.....++....... + ++|+.+|++++|.|+ | ..||+|+.|| |+||.+...+.- +.. ..+.
T Consensus 200 ~~~Iye~~e~~rKw~kva~--L---~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~--i~~---ee~~ 268 (361)
T KOG2445|consen 200 KVKIYEYNENGRKWLKVAE--L---PDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSA--IEE---EEVL 268 (361)
T ss_pred ceEEEEecCCcceeeeehh--c---CCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccch--hhh---hccc
Confidence 8999998764422222111 1 149999999999995 3 4899999998 999999764311 111 0000
Q ss_pred eeeEcCCCCCCccceeeeeeeeEEecCCceEEEEecCCcccEEEEec---cceeeeeccCCceeeeEeeecCc
Q 001567 355 SPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGED 424 (1052)
Q Consensus 355 s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~~~~~~ 424 (1052)
.|++..+. .-+++....+|...|+.+.+ |..+.+.+.||.+++|...+.+.
T Consensus 269 ----~~~~~~~l---------------~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~ 322 (361)
T KOG2445|consen 269 ----APDLMTDL---------------PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNL 322 (361)
T ss_pred ----CCCCcccc---------------ceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhh
Confidence 11110000 11344456788899987777 88899999999999998766544
No 148
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.53 E-value=1.3e-13 Score=146.32 Aligned_cols=119 Identities=17% Similarity=0.314 Sum_probs=98.2
Q ss_pred cccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee-----cCCCCeE-EEEEcCCCCEEEEEee
Q 001567 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQQILAVGTR 276 (1052)
Q Consensus 203 ~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-----~gh~~~v-~va~spd~~~lAsgs~ 276 (1052)
++.+|...|-++.|+|. ...++++++-|++|++||...+.+. ..|..-| .++||.+..+||+|+.
T Consensus 252 Pf~gH~~SVEDLqWSpt---------E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D 322 (440)
T KOG0302|consen 252 PFTGHTKSVEDLQWSPT---------EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD 322 (440)
T ss_pred cccccccchhhhccCCc---------cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC
Confidence 34456677888888653 2346788999999999999876332 6788889 9999999999999999
Q ss_pred CCeEEEEecCCC--CceeEEEEeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEcCC
Q 001567 277 RGVVELYDLAES--ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSG 338 (1052)
Q Consensus 277 Dg~V~vwd~~~~--~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp-Dg~~Lasg~~Dg~v~vWd~~~ 338 (1052)
||+++|||++.- ++++.+++- |+++|+||.|+| +...||+++.|..|.+||+.-
T Consensus 323 dGt~~iwDLR~~~~~~pVA~fk~--------Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 323 DGTLSIWDLRQFKSGQPVATFKY--------HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CceEEEEEhhhccCCCcceeEEe--------ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999752 356777877 999999999999 567899999999999999854
No 149
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.52 E-value=1e-12 Score=144.68 Aligned_cols=219 Identities=16% Similarity=0.197 Sum_probs=141.6
Q ss_pred ceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEec
Q 001567 71 LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS 150 (1052)
Q Consensus 71 ~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~ 150 (1052)
-++.|+.....+.++..+-.++-|++..+....... ++ ..++..-. +..+-.-++ ..++.++++++
T Consensus 18 c~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~---p~-df~pt~~h-~~~rs~~~g---------~~~d~~~i~s~ 83 (737)
T KOG1524|consen 18 CCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKL---PD-DFVPTDMH-LGGRSSGGG---------KGSDTLLICSN 83 (737)
T ss_pred EeecccccceEEEeccCceEEEeecccchhhhhhhC---Cc-ccCCcccc-ccccccCCC---------CCcceEEEEcC
Confidence 478888887777776665555556665433211100 00 00110000 000000001 12467999999
Q ss_pred CCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCC
Q 001567 151 DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNG 230 (1052)
Q Consensus 151 dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG 230 (1052)
||.+++++-.+..+... ..|.+++.+ ...+|||
T Consensus 84 DGkf~il~k~~rVE~sv-------------------------------------~AH~~A~~~----------gRW~~dG 116 (737)
T KOG1524|consen 84 DGRFVILNKSARVERSI-------------------------------------SAHAAAISS----------GRWSPDG 116 (737)
T ss_pred CceEEEecccchhhhhh-------------------------------------hhhhhhhhh----------cccCCCC
Confidence 99999886555443221 122233322 2348999
Q ss_pred cEEEEEecCCceeeeeecccc--eecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCC
Q 001567 231 QLMSCSVSKKGLKLAEFIKID--KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT 307 (1052)
Q Consensus 231 ~~~~~~~~d~~i~~w~~~~~~--~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~ 307 (1052)
.-+++.+.||.+++|.-..-- .+.....+| |++|.|+..-++. |..|.+.+=.+.. ...+-.++. |.
T Consensus 117 tgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~-c~g~h~~IKpL~~-n~k~i~WkA--------HD 186 (737)
T KOG1524|consen 117 AGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVF-CQGGHISIKPLAA-NSKIIRWRA--------HD 186 (737)
T ss_pred ceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEE-ecCCeEEEeeccc-ccceeEEec--------cC
Confidence 999999999999999643211 113446788 9999999888777 4556777777765 444455676 99
Q ss_pred CCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCC
Q 001567 308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1052)
Q Consensus 308 g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (1052)
|-|.|+.|+|....+++|++|-..+|||.+|..++.+-. | ..++++++|.|+.
T Consensus 187 GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~-~-ey~ITSva~npd~ 239 (737)
T KOG1524|consen 187 GLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAA-E-EYAITSVAFNPEK 239 (737)
T ss_pred cEEEEeecCccccceeecCCceeEEeecccCcccccCCh-h-ccceeeeeecccc
Confidence 999999999999999999999999999999987665433 3 5678888887763
No 150
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.50 E-value=5e-13 Score=149.95 Aligned_cols=264 Identities=17% Similarity=0.263 Sum_probs=186.7
Q ss_pred CeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 001567 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1052)
Q Consensus 258 ~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~ 336 (1052)
+.| .++|-|||..|+.+. +..+.+||..+ |..+.++++ |...|.|++||.||+.+|||+.|+.|.+|+.
T Consensus 13 hci~d~afkPDGsqL~lAA-g~rlliyD~nd-G~llqtLKg--------HKDtVycVAys~dGkrFASG~aDK~VI~W~~ 82 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAA-GSRLLVYDTSD-GTLLQPLKG--------HKDTVYCVAYAKDGKRFASGSADKSVIIWTS 82 (1081)
T ss_pred cchheeEECCCCceEEEec-CCEEEEEeCCC-ccccccccc--------ccceEEEEEEccCCceeccCCCceeEEEecc
Confidence 367 899999999988865 45789999998 999999999 9999999999999999999999999999986
Q ss_pred CCCeEEEEecccccCceeeeeEcCCCCCCccceeeee--eeeEEecCCceEEEEecCCcccEEEEec---cceeeeeccC
Q 001567 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVS 411 (1052)
Q Consensus 337 ~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d 411 (1052)
. +..+++-.|.+.+.+..|.|-. ..++|++ .-.+|+++....... ....++...++ |++++-|-.+
T Consensus 83 k---lEG~LkYSH~D~IQCMsFNP~~----h~LasCsLsdFglWS~~qK~V~K~--kss~R~~~CsWtnDGqylalG~~n 153 (1081)
T KOG1538|consen 83 K---LEGILKYSHNDAIQCMSFNPIT----HQLASCSLSDFGLWSPEQKSVSKH--KSSSRIICCSWTNDGQYLALGMFN 153 (1081)
T ss_pred c---ccceeeeccCCeeeEeecCchH----HHhhhcchhhccccChhhhhHHhh--hhheeEEEeeecCCCcEEEEeccC
Confidence 4 3334444347889999999987 7888776 667898865433221 12345555555 8899999999
Q ss_pred CceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCC-----CEEEEEeCCceE-EEEccCCcE
Q 001567 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-----MFLAVAGLHGLI-LYDIRQKKW 485 (1052)
Q Consensus 412 ~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG-----~~lavag~dG~i-lwd~~s~~w 485 (1052)
||+.+++- .++.++.+ ..--|.|.||.+++|+|.. ..+|++.-..+. .|.+...
T Consensus 154 GTIsiRNk-~gEek~~I-----------------~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-- 213 (1081)
T KOG1538|consen 154 GTISIRNK-NGEEKVKI-----------------ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-- 213 (1081)
T ss_pred ceEEeecC-CCCcceEE-----------------eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--
Confidence 99988753 33333221 1223678999999999873 477888877777 7776542
Q ss_pred EEecCc-cceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCC--CCCCcceeEEeecCCc--cEEEEeeCCEEEEEE
Q 001567 486 RVFGDI-TQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAK--PIVMDVYEDYILVTY 560 (1052)
Q Consensus 486 ~~f~~~-~~e~~~~v~gl~W~~~~li~~~~~~~~~~~elrly~~~--~ld~~~~l~~~~~~~~--~~~~s~~~~~llv~~ 560 (1052)
.++.. .-+-+-.|..-+-.|.++++| +.+..+.+|-|+ .|.. + -++.+- .+.+-|++.+.++++
T Consensus 214 -~Igk~r~L~FdP~CisYf~NGEy~LiG-----Gsdk~L~~fTR~GvrLGT--v---g~~D~WIWtV~~~PNsQ~v~~GC 282 (1081)
T KOG1538|consen 214 -QIGKDRALNFDPCCISYFTNGEYILLG-----GSDKQLSLFTRDGVRLGT--V---GEQDSWIWTVQAKPNSQYVVVGC 282 (1081)
T ss_pred -eecccccCCCCchhheeccCCcEEEEc-----cCCCceEEEeecCeEEee--c---cccceeEEEEEEccCCceEEEEE
Confidence 22211 111111244555568899988 556789999886 2221 1 111221 234556788899999
Q ss_pred cCCeEEEEEEE
Q 001567 561 RPFDVHIFHVK 571 (1052)
Q Consensus 561 ~d~~i~l~~~~ 571 (1052)
.||+|..|.+.
T Consensus 283 qDGTiACyNl~ 293 (1081)
T KOG1538|consen 283 QDGTIACYNLI 293 (1081)
T ss_pred ccCeeehhhhH
Confidence 99999988654
No 151
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.4e-12 Score=145.75 Aligned_cols=312 Identities=16% Similarity=0.192 Sum_probs=189.0
Q ss_pred CceEEEEe--eCCeEEEEEc-CCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCcc--EEEEEeCCcEEEEEE
Q 001567 21 SQQIIYFK--VNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK--LIAVVTSSLYLHIFK 95 (1052)
Q Consensus 21 ~~~vv~fS--pdg~llA~~s-d~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~--~Lav~t~dg~l~i~~ 95 (1052)
...|.++| |.|.+||+++ |++|+||-+. ++..+-.. .-.+.+.+|+|.|.+. .||++.... +.|-+
T Consensus 400 tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~-TgRcvr~~-------~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivn 470 (733)
T KOG0650|consen 400 TGLVRSISVDPSGEWLASGSDDGTVRIWEIA-TGRCVRTV-------QFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVN 470 (733)
T ss_pred CCeEEEEEecCCcceeeecCCCCcEEEEEee-cceEEEEE-------eecceeEEEEecCCCCceeEEEEecCc-eEEeC
Confidence 34555555 6699999996 6899999996 54433322 2236788999999886 577776655 66666
Q ss_pred EEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEE-----ecCCcEEEEeccCccccceeec
Q 001567 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG-----LSDGSLYSISWKGEFYGAFELV 170 (1052)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~-----t~dg~v~~~~wd~~~~~~~~l~ 170 (1052)
..+|....... .+.++.. ..++.+. .|........+.
T Consensus 471 p~~G~~~e~~~-----------------------------------t~ell~~~~~~~~p~~~~~--~W~~~~~~e~~~- 512 (733)
T KOG0650|consen 471 PIFGDRLEVGP-----------------------------------TKELLASAPNESEPDAAVV--TWSRASLDELEK- 512 (733)
T ss_pred ccccchhhhcc-----------------------------------hhhhhhcCCCccCCcccce--eechhhhhhhcc-
Confidence 55552110000 0000000 1122332 354332111100
Q ss_pred ccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccc
Q 001567 171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI 250 (1052)
Q Consensus 171 ~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~ 250 (1052)
.++ ....+...|.+++|+..+.+++.+.++|.. ..+-+.+..+.
T Consensus 513 -------~v~----------------------~~I~~~k~i~~vtWHrkGDYlatV~~~~~~-------~~VliHQLSK~ 556 (733)
T KOG0650|consen 513 -------GVC----------------------IVIKHPKSIRQVTWHRKGDYLATVMPDSGN-------KSVLIHQLSKR 556 (733)
T ss_pred -------ceE----------------------EEEecCCccceeeeecCCceEEEeccCCCc-------ceEEEEecccc
Confidence 000 112455678888887777777777666531 11223333322
Q ss_pred ce---ecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEE
Q 001567 251 DK---ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (1052)
Q Consensus 251 ~~---~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~ 326 (1052)
.. +....+.+ ++.|+|...++.++++. .|++||+.. ..++.++.. -...|.+++.+|.|.-|+.|+
T Consensus 557 ~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~k-qelvKkL~t--------g~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 557 KSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSK-QELVKKLLT--------GSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred cccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhH-HHHHHHHhc--------CCeeeeeeeecCCCCeEEEec
Confidence 11 11223445 99999999998887764 799999976 666555543 456799999999999999999
Q ss_pred cCCcEEEEEcC-CCeEEEEecccccCceeeeeEcCCCCCCccceeeeeeeeEEecCCceEEEEecCCcccEEEEecccee
Q 001567 327 KSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCC 405 (1052)
Q Consensus 327 ~Dg~v~vWd~~-~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~ 405 (1052)
.|+.+..+|+. +.+...+++.| ...+.+++|++.- ..++||
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H-~~avr~Va~H~ry----PLfas~--------------------------------- 668 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLH-EKAVRSVAFHKRY----PLFASG--------------------------------- 668 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhh-hhhhhhhhhcccc----ceeeee---------------------------------
Confidence 99999999985 34667788877 7788888888764 444443
Q ss_pred eeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccC-cccccCCC----cEEEEEEccCCCEEEEEeCCceE-EE
Q 001567 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNW----PVQHVAASKDGMFLAVAGLHGLI-LY 478 (1052)
Q Consensus 406 ~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p-~~~~~h~~----~V~~va~SpdG~~lavag~dG~i-lw 478 (1052)
+.|+++.++.-.--.+ +......+| ..+.+|.- -|..+.|+|...+|.+||.||++ +|
T Consensus 669 ---sdDgtv~Vfhg~VY~D------------l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 669 ---SDDGTVIVFHGMVYND------------LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ---cCCCcEEEEeeeeehh------------hhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 4444443322110000 000111122 23334543 48899999999999999999999 87
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.49 E-value=1.5e-12 Score=142.32 Aligned_cols=214 Identities=17% Similarity=0.199 Sum_probs=158.0
Q ss_pred CeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcC
Q 001567 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (1052)
Q Consensus 258 ~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~ 337 (1052)
...|++.+....++++|+..|+|+|||++. ....+.++. |+..|++|.+.-...+||+++..|.|.|-++.
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~hr~lkd--------h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~ 151 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRA-KLIHRFLKD--------HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK 151 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHH-HHHhhhccC--------CcceeEEEEecCCcceeEEeccCCcEEEEecc
Confidence 334887777779999999999999999985 455556666 99999999999999999999999999999999
Q ss_pred CCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEe-cCCcccE--EEEec--cceeeeec
Q 001567 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE-EGSSERV--LIFSF--GKCCLNRG 409 (1052)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~-~~~~~~v--~~~s~--~k~~~s~s 409 (1052)
++....++.......|.-+.++|.. ...+.+.+ .+-+||..+...++.. ..|...- ++|++ ...+++.+
T Consensus 152 t~~~tt~f~~~sgqsvRll~ys~sk---r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG 228 (673)
T KOG4378|consen 152 TKQKTTTFTIDSGQSVRLLRYSPSK---RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG 228 (673)
T ss_pred cCccccceecCCCCeEEEeeccccc---ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec
Confidence 8877667665434456678888875 23333333 8899999987765543 3454443 78888 66888999
Q ss_pred cCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEe
Q 001567 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (1052)
Q Consensus 410 ~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f 488 (1052)
.|..+.++|...... ..-+.-..|...++|+++|.+|+.|+..|.+ .||+++.+-.+-
T Consensus 229 ~Dkki~~yD~~s~~s---------------------~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~ 287 (673)
T KOG4378|consen 229 YDKKINIYDIRSQAS---------------------TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA 287 (673)
T ss_pred ccceEEEeecccccc---------------------cceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCce
Confidence 999999988653221 1111223588999999999999999999999 999988764332
Q ss_pred cCccceeeeEEEEEEEeC
Q 001567 489 GDITQEQKIQSKGLLWLG 506 (1052)
Q Consensus 489 ~~~~~e~~~~v~gl~W~~ 506 (1052)
-...+.. .|+.++|-.
T Consensus 288 v~sah~~--sVt~vafq~ 303 (673)
T KOG4378|consen 288 VRSAHDA--SVTRVAFQP 303 (673)
T ss_pred Eeeeccc--ceeEEEeee
Confidence 2222222 255666643
No 153
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.48 E-value=1.5e-12 Score=139.06 Aligned_cols=211 Identities=15% Similarity=0.215 Sum_probs=139.1
Q ss_pred CCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeeeeeeEEe
Q 001567 301 GYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD 379 (1052)
Q Consensus 301 ~~~~~h~g~V~~l~~Sp-Dg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~ 379 (1052)
+.-.+|+++|..++|+| +.+.|||||+|.+|.||.+..+.+...+.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt--------------------------------- 121 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT--------------------------------- 121 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc---------------------------------
Confidence 33456999999999999 67899999999999999997654332221
Q ss_pred cCCceEEEEecCCcccE--EEEec--cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcE
Q 001567 380 EYGYRLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (1052)
Q Consensus 380 ~~~~~l~~~~~~~~~~v--~~~s~--~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V 455 (1052)
+.+..+.||+.+| +++.+ ...++|++.|.++.+|++.+++.- -+ +.|.+-|
T Consensus 122 ----epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeal--------------------i~-l~hpd~i 176 (472)
T KOG0303|consen 122 ----EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEAL--------------------IT-LDHPDMV 176 (472)
T ss_pred ----cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCcee--------------------ee-cCCCCeE
Confidence 2223344566555 44444 456778999999999999988862 12 2389999
Q ss_pred EEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCCCCCCc
Q 001567 456 QHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQS 534 (1052)
Q Consensus 456 ~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~elrly~~~~ld~~ 534 (1052)
.+++|+.||.+++++++|..+ +||..+++--.-+ ..||.. .-....|.++..+......+..+.++-+|+.++|...
T Consensus 177 ~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~-k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP 254 (472)
T KOG0303|consen 177 YSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGA-KPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP 254 (472)
T ss_pred EEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCC-CcceeEEeccCceeeeccccccccceeccCcccccCc
Confidence 999999999999999999999 9999988754333 223321 1223567655444322233456788999988777665
Q ss_pred ceeEEeecCCccEE--EEeeCCEEEE-EEcCCeEEEEEEE
Q 001567 535 SLLCRKSLLAKPIV--MDVYEDYILV-TYRPFDVHIFHVK 571 (1052)
Q Consensus 535 ~~l~~~~~~~~~~~--~s~~~~~llv-~~~d~~i~l~~~~ 571 (1052)
-.+...+-.+.+++ .+++.+.+.+ +-.|+.|+-|.+.
T Consensus 255 ~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 255 IALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred ceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 33333332222221 2232233222 4566777777664
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.48 E-value=6.8e-13 Score=144.05 Aligned_cols=218 Identities=13% Similarity=0.143 Sum_probs=160.0
Q ss_pred CCcEEEEEecCCceeeeeecc-----cce-------------------ecCCCCeE-EEEEcCCC-CEEEEEeeCCeEEE
Q 001567 229 NGQLMSCSVSKKGLKLAEFIK-----IDK-------------------ELGSGDAV-CASIAPEQ-QILAVGTRRGVVEL 282 (1052)
Q Consensus 229 dG~~~~~~~~d~~i~~w~~~~-----~~~-------------------~~gh~~~v-~va~spd~-~~lAsgs~Dg~V~v 282 (1052)
-|.++|.|.-+..|.+||..- +.. -.+|+++| .++||... ..||+|+.|.||++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 467888888888999997631 000 03799999 99999874 57999999999999
Q ss_pred EecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEcCCCe---EEEEecccccCceeeeeE
Q 001567 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIV 358 (1052)
Q Consensus 283 wd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp-Dg~~Lasg~~Dg~v~vWd~~~~~---l~~tl~~~~~~~v~s~~~ 358 (1052)
||+++ +++..++.. |.+.|.+++|.| .+..|.+|+.|++|++.|..... ....+ .+.|-.+++
T Consensus 271 WD~~~-g~p~~s~~~--------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~----~g~VEkv~w 337 (463)
T KOG0270|consen 271 WDVDT-GKPKSSITH--------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF----DGEVEKVAW 337 (463)
T ss_pred EEcCC-CCcceehhh--------cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe----ccceEEEEe
Confidence 99998 888888876 999999999999 57899999999999999987311 11122 356778888
Q ss_pred cCCCCCCccceeee---eeeeEEecCC-ceEEEEecCCcccEEEEec----cceeeeeccCCceeeeEeeecCceEEEEe
Q 001567 359 KPNQDCKYEPLMSG---TSMMQWDEYG-YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (1052)
Q Consensus 359 sp~~~~~~~~l~sg---~~~~~W~~~~-~~l~~~~~~~~~~v~~~s~----~k~~~s~s~d~~v~~w~~~~~~~~l~~~~ 430 (1052)
.|... ..+..+ ++++-.|.+. ++++.+...|.+.|-.+++ ...++|++.|+++++|++.....+
T Consensus 338 ~~~se---~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~----- 409 (463)
T KOG0270|consen 338 DPHSE---NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK----- 409 (463)
T ss_pred cCCCc---eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc-----
Confidence 87752 223333 2777777754 4788888899999954444 457789999999999998654432
Q ss_pred cCCcchheeeeeccCcccccCC---CcEEEEEEccCC-CEEEEEeCCceE-EEEccCC
Q 001567 431 SEDTDELKILHLNLPVSYISQN---WPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQK 483 (1052)
Q Consensus 431 ~~~~~~~~w~~~~~p~~~~~h~---~~V~~va~SpdG-~~lavag~dG~i-lwd~~s~ 483 (1052)
....|. +...|.++.|+- -.+|.||..+.+ +||+.+.
T Consensus 410 ----------------~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 410 ----------------SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ----------------ccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 111121 124556667763 477889999977 9998764
No 155
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.48 E-value=4.4e-10 Score=129.67 Aligned_cols=353 Identities=22% Similarity=0.307 Sum_probs=222.1
Q ss_pred eEEEEeeCCeEEEEEc-CCcEEEeecCCceeEEEEEecChhhhhhcCccceEEE-cCCcc-EEEEEeC-CcEEEEEEEEe
Q 001567 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVW-SPDTK-LIAVVTS-SLYLHIFKVQI 98 (1052)
Q Consensus 23 ~vv~fSpdg~llA~~s-d~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~w-SPDg~-~Lav~t~-dg~l~i~~l~~ 98 (1052)
..+.|++++..++..+ ++.+.+|+.......+..+..... ..+..+.+ +|++. .++..+. ++.+.+|++..
T Consensus 69 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----SSVSKLALSSPDGNSILLASSSLDGTVKLWDLST 143 (466)
T ss_pred EEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----CceeeEEEECCCcceEEeccCCCCccEEEEEecC
Confidence 3367888998888875 889999998643213333322111 23445555 99998 5555455 89999999975
Q ss_pred -cCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEec-CCcEEEEeccCccccceeecccCCCC
Q 001567 99 -TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDS 176 (1052)
Q Consensus 99 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~-dg~v~~~~wd~~~~~~~~l~~~~~~~ 176 (1052)
.........|. ......++.+++..++.+.. ++.+.. |+........
T Consensus 144 ~~~~~~~~~~~~---------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------- 192 (466)
T COG2319 144 PGKLIRTLEGHS---------------------ESVTSLAFSPDGKLLASGSSLDGTIKL--WDLRTGKPLS-------- 192 (466)
T ss_pred CCeEEEEEecCc---------------------ccEEEEEECCCCCEEEecCCCCCceEE--EEcCCCceEE--------
Confidence 11111111111 11113355666666666664 888876 4433211110
Q ss_pred ccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCc-EEEEEecCCceeeeeecccce---
Q 001567 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDK--- 252 (1052)
Q Consensus 177 ~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~d~~i~~w~~~~~~~--- 252 (1052)
....+...+..+++ +|+|+ .+++++.|+++++|+...+..
T Consensus 193 --------------------------~~~~~~~~v~~~~~----------~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~ 236 (466)
T COG2319 193 --------------------------TLAGHTDPVSSLAF----------SPDGGLLIASGSSDGTIRLWDLSTGKLLRS 236 (466)
T ss_pred --------------------------eeccCCCceEEEEE----------cCCcceEEEEecCCCcEEEEECCCCcEEee
Confidence 01124455666554 57777 444447888899997553322
Q ss_pred -ecCCCCeEEE-EEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCc
Q 001567 253 -ELGSGDAVCA-SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (1052)
Q Consensus 253 -~~gh~~~v~v-a~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~ 330 (1052)
..+|.... + .|+|++.++++++.|+.+++|++.........+.. |...|.++.|+|++..+++++.|+.
T Consensus 237 ~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~d~~ 307 (466)
T COG2319 237 TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG--------HSSSVLSVAFSPDGKLLASGSSDGT 307 (466)
T ss_pred ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEec--------CCccEEEEEECCCCCEEEEeeCCCc
Confidence 35666664 4 79999999999999999999999863332333333 8999999999999999999999988
Q ss_pred EEEEEcCCCeEEEEec--ccccCceeeeeEcCCCCCCccceeee----eeeeEEecCCceEEEEecCCcccE--EEEecc
Q 001567 331 LTVWSVSGCRLMSTIR--QISLSSISSPIVKPNQDCKYEPLMSG----TSMMQWDEYGYRLYAIEEGSSERV--LIFSFG 402 (1052)
Q Consensus 331 v~vWd~~~~~l~~tl~--~~~~~~v~s~~~sp~~~~~~~~l~sg----~~~~~W~~~~~~l~~~~~~~~~~v--~~~s~~ 402 (1052)
+.+|+..+........ .| ...+..+.+ +.. ...+..+ ..+..|+............... + +.+...
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 381 (466)
T COG2319 308 VRLWDLETGKLLSSLTLKGH-EGPVSSLSF-SPD---GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPD 381 (466)
T ss_pred EEEEEcCCCceEEEeeeccc-CCceEEEEE-CCC---CCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECCC
Confidence 9999998887666665 55 446888888 421 1222222 2555688776662222222221 3 233221
Q ss_pred ceee-eeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEc
Q 001567 403 KCCL-NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1052)
Q Consensus 403 k~~~-s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~ 480 (1052)
.... .+..++.+.+|+....... .....+...+....+++++.+++.++.++.+ .|+.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 382 GRVVSSGSTDGTVRLWDLSTGSLL--------------------RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441 (466)
T ss_pred CCEEEEecCCCceEEEecccCeee--------------------eeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEec
Confidence 0122 2567788888886654431 1111111679999999999999999999999 9998
Q ss_pred cC
Q 001567 481 RQ 482 (1052)
Q Consensus 481 ~s 482 (1052)
.+
T Consensus 442 ~~ 443 (466)
T COG2319 442 KT 443 (466)
T ss_pred cC
Confidence 77
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.47 E-value=3.8e-12 Score=138.64 Aligned_cols=275 Identities=13% Similarity=0.135 Sum_probs=172.5
Q ss_pred cCccceEEEcCCc--cEEEEEeCCcEEEEEEEEecC---ceeecCCCCCCCceeeeEeeeeccccccccccceEEEEe--
Q 001567 67 EGENLQAVWSPDT--KLIAVVTSSLYLHIFKVQITE---KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-- 139 (1052)
Q Consensus 67 ~G~~~~v~wSPDg--~~Lav~t~dg~l~i~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-- 139 (1052)
.|.+.+++|.|-- +++|+|...|.|=+||+.... ...+. +..+.++|.++.
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~----------------------f~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL----------------------FTPHSGPVSGLKFS 243 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE----------------------eccCCccccceEec
Confidence 5788999999955 589999999999999995222 22221 222333444443
Q ss_pred ec-CCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecC
Q 001567 140 SD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL 218 (1052)
Q Consensus 140 ~d-~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~ 218 (1052)
+. ...++.++.||+++..+.++..-...- +. ......+.++
T Consensus 244 P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~----------------s~------------------~~d~~~fs~~---- 285 (498)
T KOG4328|consen 244 PANTSQIYSSSYDGTIRLQDFEGNISEEVL----------------SL------------------DTDNIWFSSL---- 285 (498)
T ss_pred CCChhheeeeccCceeeeeeecchhhHHHh----------------hc------------------Cccceeeeec----
Confidence 32 357888889999988766643311110 00 0001112222
Q ss_pred CcceEEEEeeCCcEEEEEecCCceeeeeecccce----ecCCCCeE-EEEEcCCC-CEEEEEeeCCeEEEEecCCCCcee
Q 001567 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK----ELGSGDAV-CASIAPEQ-QILAVGTRRGVVELYDLAESASLI 292 (1052)
Q Consensus 219 ~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~----~~gh~~~v-~va~spd~-~~lAsgs~Dg~V~vwd~~~~~~~~ 292 (1052)
.++.+.+.++.+.+=+...+||...... +.-|...| .+++||.. .++|+|+.|++.+|||++.-....
T Consensus 286 ------d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~ 359 (498)
T KOG4328|consen 286 ------DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA 359 (498)
T ss_pred ------cccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC
Confidence 2355555555555555677888775433 35577788 99999965 469999999999999987521111
Q ss_pred -EEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcC----CCeEEEEeccccc--C--ceeeeeEcCCCC
Q 001567 293 -RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS----GCRLMSTIRQISL--S--SISSPIVKPNQD 363 (1052)
Q Consensus 293 -~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~----~~~l~~tl~~~~~--~--~v~s~~~sp~~~ 363 (1052)
..+.. .+|+..|.+..|||+|-.|++.+.|..|+|||.. .-.+.+++..... . ..--.+|.|+.
T Consensus 360 sp~lst------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~- 432 (498)
T KOG4328|consen 360 SPFLST------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY- 432 (498)
T ss_pred Ccceec------ccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCc-
Confidence 12222 2499999999999988789999999999999983 3334445543111 1 11234677865
Q ss_pred CCccceeeee---eeeEEecCCceEEEEecCCcc----cEEEEec-cceeeeec-cCCceeee
Q 001567 364 CKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE----RVLIFSF-GKCCLNRG-VSGMTYAR 417 (1052)
Q Consensus 364 ~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~----~v~~~s~-~k~~~s~s-~d~~v~~w 417 (1052)
..++.|- .+-+++.++++++....+... .+..+.+ ...+++|+ ..|.+++|
T Consensus 433 ---~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 433 ---NLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ---cEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 6777665 677899999997777544322 2466777 44344444 44444444
No 157
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.47 E-value=1.4e-12 Score=146.38 Aligned_cols=266 Identities=15% Similarity=0.138 Sum_probs=173.4
Q ss_pred EEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEE
Q 001567 136 SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (1052)
Q Consensus 136 ~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~ 215 (1052)
.|+.|||.+++++..+. +.+++-+ .+... .++.+|+..|.+++
T Consensus 18 ~afkPDGsqL~lAAg~r-lliyD~n--dG~ll----------------------------------qtLKgHKDtVycVA 60 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAGSR-LLVYDTS--DGTLL----------------------------------QPLKGHKDTVYCVA 60 (1081)
T ss_pred eEECCCCceEEEecCCE-EEEEeCC--Ccccc----------------------------------cccccccceEEEEE
Confidence 37889999988887664 4444322 21111 23456677776655
Q ss_pred ecCCcceEEEEeeCCcEEEEEecCCceeeeeeccc-ceecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeE
Q 001567 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-DKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (1052)
Q Consensus 216 ~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~-~~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~ 293 (1052)
| +.||+.+++|+.|+.+-+|+.... .....|++++ |+.|||-...||+++-+ ..-+|..+. +.+.
T Consensus 61 y----------s~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~q--K~V~ 127 (1081)
T KOG1538|consen 61 Y----------AKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQ--KSVS 127 (1081)
T ss_pred E----------ccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhh--hhHH
Confidence 4 899999999999999999976532 2236799999 99999999999997754 467888764 2222
Q ss_pred EEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEec-ccccCceeeeeEcCCCCCCc-cceee
Q 001567 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR-QISLSSISSPIVKPNQDCKY-EPLMS 371 (1052)
Q Consensus 294 ~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~-~~~~~~v~s~~~sp~~~~~~-~~l~s 371 (1052)
..+ ....|.+++|+.||++||.|-.||||.+-+-.+......-+ |...++|.+++++|+..... +.++-
T Consensus 128 K~k---------ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 128 KHK---------SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred hhh---------hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence 111 24678999999999999999999999999887654443333 33467899999999863211 22221
Q ss_pred ee---eeeEEecCCceEEEEecCCcccEEEEec---cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccC
Q 001567 372 GT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (1052)
Q Consensus 372 g~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p 445 (1052)
.. +.-++...| +.+.....-.-.-.++++ |.+++-|+.|+..+++.- ..-+ .
T Consensus 199 ~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR--~Gvr-------------------L 256 (1081)
T KOG1538|consen 199 ADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR--DGVR-------------------L 256 (1081)
T ss_pred EeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEee--cCeE-------------------E
Confidence 11 222222222 111110000000123333 888888888887776531 1111 1
Q ss_pred cccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccC
Q 001567 446 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1052)
Q Consensus 446 ~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s 482 (1052)
.+.-.....|++++..|+|+++++|+.||++ .|++..
T Consensus 257 GTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 257 GTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred eeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 1122234569999999999999999999999 999854
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.47 E-value=2e-12 Score=140.70 Aligned_cols=276 Identities=14% Similarity=0.156 Sum_probs=171.3
Q ss_pred CCCCeE-EEEEcCCC--CEEEEEeeCCeEEEEecCCCC---ceeEEEEeecCCCCCCCCCCeeEEEECCC-CCEEEEEEc
Q 001567 255 GSGDAV-CASIAPEQ--QILAVGTRRGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWK 327 (1052)
Q Consensus 255 gh~~~v-~va~spd~--~~lAsgs~Dg~V~vwd~~~~~---~~~~~l~~~~~~~~~~h~g~V~~l~~SpD-g~~Lasg~~ 327 (1052)
-+...+ |++|+|.. +++|+|..-|+|-+||+.+.. .-+..+.. |.++|.++.|+|. -..+.+.+.
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~--------hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP--------HSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc--------CCccccceEecCCChhheeeecc
Confidence 456777 99999964 689999999999999995312 12333444 9999999999994 458888999
Q ss_pred CCcEEEEEcCCCeE--EEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceE-EEEecCCcccE--EEE
Q 001567 328 SRGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL-YAIEEGSSERV--LIF 399 (1052)
Q Consensus 328 Dg~v~vWd~~~~~l--~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l-~~~~~~~~~~v--~~~ 399 (1052)
||+|++=|+.++.. +.++... ...+++..|+... ..+..|. ..-+|+..+..- .-...-|..+| +.+
T Consensus 256 DGtiR~~D~~~~i~e~v~s~~~d-~~~fs~~d~~~e~----~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSLDTD-NIWFSSLDFSAES----RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred CceeeeeeecchhhHHHhhcCcc-ceeeeeccccCCC----ccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 99999999987642 2232211 2334555555443 4444443 334666543211 11222355577 566
Q ss_pred ec--cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccC-cccccCCCcEEEEEEccCCCEEEEEeCCceE
Q 001567 400 SF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (1052)
Q Consensus 400 s~--~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p-~~~~~h~~~V~~va~SpdG~~lavag~dG~i 476 (1052)
.+ -..++|+|.|++.++||+.+-..+- -| .....|.-+|.++.|||+|-.|++-+.|..|
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~-----------------sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~I 393 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKA-----------------SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEI 393 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCC-----------------CcceecccccceeeeeEEcCCCCceEeeccCCce
Confidence 66 5588999999999999987654420 02 1234788999999999998889999999999
Q ss_pred -EEEcc--CCcEEEecCccceee----eEEEEEEEe--CCEEEEEEEecCCCeEEEEEeeCCCCCCcceeEEeecCC---
Q 001567 477 -LYDIR--QKKWRVFGDITQEQK----IQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLA--- 544 (1052)
Q Consensus 477 -lwd~~--s~~w~~f~~~~~e~~----~~v~gl~W~--~~~li~~~~~~~~~~~elrly~~~~ld~~~~l~~~~~~~--- 544 (1052)
+||.. +.+-...+...|... +......|. .++++++.|. ..|.+|+-. ...+.+..-.|.
T Consensus 394 Rv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~-----r~IDv~~~~---~~q~v~el~~P~~~t 465 (498)
T KOG4328|consen 394 RVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP-----RPIDVFDGN---GGQMVCELHDPESST 465 (498)
T ss_pred EEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccC-----cceeEEcCC---CCEEeeeccCccccc
Confidence 99984 111111111111111 122234564 4466666554 347888664 222222211121
Q ss_pred --ccEEEEeeCCEEEE-EEcCCeEEEE
Q 001567 545 --KPIVMDVYEDYILV-TYRPFDVHIF 568 (1052)
Q Consensus 545 --~~~~~s~~~~~llv-~~~d~~i~l~ 568 (1052)
.+..+.|.++.++. ....|.|.||
T Consensus 466 I~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 466 IPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred cccceeecccccceeccCCccceEEEE
Confidence 23446677786666 4555666666
No 159
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.46 E-value=3.8e-12 Score=135.40 Aligned_cols=134 Identities=17% Similarity=0.238 Sum_probs=101.8
Q ss_pred CCcceEEEEee--CCcEEEEEecCCceeeeeecccce------ecCCCCeE-EEEEcCC-CCEEEEEeeCCeEEEEecCC
Q 001567 218 LPMRLLFVLYS--NGQLMSCSVSKKGLKLAEFIKIDK------ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAE 287 (1052)
Q Consensus 218 ~~~~~~~~~s~--dG~~~~~~~~d~~i~~w~~~~~~~------~~gh~~~v-~va~spd-~~~lAsgs~Dg~V~vwd~~~ 287 (1052)
...++.+.+|| .|+ +++|-..+.+.+|...++.- +.+|+++| .+.|||. ...+|+||.||+|+|||++.
T Consensus 211 k~EGy~LdWSp~~~g~-LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs 289 (440)
T KOG0302|consen 211 KGEGYGLDWSPIKTGR-LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS 289 (440)
T ss_pred Cccceeeecccccccc-cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence 33344555565 333 34444456678887765421 26899999 9999996 56899999999999999987
Q ss_pred CCceeEEE--EeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcC---CCeEEEEecccccCceeeeeEcCCC
Q 001567 288 SASLIRTV--SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS---GCRLMSTIRQISLSSISSPIVKPNQ 362 (1052)
Q Consensus 288 ~~~~~~~l--~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~---~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (1052)
+.....+ +. |.+.|+.|+|+.+-.+||+|++||+++|||+. .+..+.+++.| ..+|+++.|+|..
T Consensus 290 -~~~~~~~~~kA--------h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H-k~pItsieW~p~e 359 (440)
T KOG0302|consen 290 -GPKKAAVSTKA--------HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH-KAPITSIEWHPHE 359 (440)
T ss_pred -CCccceeEeec--------cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec-cCCeeEEEecccc
Confidence 4222222 44 99999999999988899999999999999984 45677888877 7889999998876
No 160
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.45 E-value=1.1e-12 Score=146.67 Aligned_cols=236 Identities=19% Similarity=0.276 Sum_probs=152.9
Q ss_pred CCCCEEEE--EeeCCeEEEEecCCCCceeEE-EEeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEcCCCeE
Q 001567 266 PEQQILAV--GTRRGVVELYDLAESASLIRT-VSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRL 341 (1052)
Q Consensus 266 pd~~~lAs--gs~Dg~V~vwd~~~~~~~~~~-l~~~~~~~~~~h~g~V~~l~~Sp-Dg~~Lasg~~Dg~v~vWd~~~~~l 341 (1052)
.+...+|+ .+..|.|-||++...+++--. +.+.. ....|+.+.|.| |...||+|++||.|++|.+..+.+
T Consensus 589 an~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~------Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl 662 (1012)
T KOG1445|consen 589 ANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF------NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL 662 (1012)
T ss_pred eccceEEEEecCCCceEEEEEcCCCCCCCcccccccc------cCceeeecccCCCChHHeeecccCceEEEEEeccCCC
Confidence 34455554 455689999999886653221 11100 345699999999 889999999999999999865421
Q ss_pred EEEecccccCceeeeeEcCCCCCCccceeeeeeeeEEecCCceEEEEecCCcccEEEEec----cceeeeeccCCceeee
Q 001567 342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYAR 417 (1052)
Q Consensus 342 ~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s~----~k~~~s~s~d~~v~~w 417 (1052)
-.. .. ..-..+..|.+.|..+.| ...+++++.|.++++|
T Consensus 663 ~e~------------------------~~-------------tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 663 PEN------------------------EM-------------TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred Ccc------------------------cC-------------CcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 100 00 000112345556644443 6678899999999999
Q ss_pred EeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceee
Q 001567 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQK 496 (1052)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~ 496 (1052)
|+..+..+ ..+.+|.+.|..+||||||+.+|+.+.||++ +|+-.++.-... |..
T Consensus 706 Dl~~~~~~--------------------~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~-----Eg~ 760 (1012)
T KOG1445|consen 706 DLANAKLY--------------------SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY-----EGK 760 (1012)
T ss_pred ehhhhhhh--------------------heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc-----cCC
Confidence 99888773 4678999999999999999999999999999 999988764433 222
Q ss_pred eEE--E--EEEE--eCCEEEEEEEecCCCeEEEEEeeCCCCCCcceeEEeecCCccEEE----EeeCCEEEEEEcCCeEE
Q 001567 497 IQS--K--GLLW--LGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVM----DVYEDYILVTYRPFDVH 566 (1052)
Q Consensus 497 ~~v--~--gl~W--~~~~li~~~~~~~~~~~elrly~~~~ld~~~~l~~~~~~~~~~~~----s~~~~~llv~~~d~~i~ 566 (1052)
-.+ + .+.| .+.++|+.+.+ ...+.+|.+|+.+.++-..+ ++..+...|..+ +.+.+.++ .+..|+-.
T Consensus 761 gpvgtRgARi~wacdgr~viv~Gfd-k~SeRQv~~Y~Aq~l~~~pl-~t~~lDvaps~LvP~YD~Ds~~lf-ltGKGD~~ 837 (1012)
T KOG1445|consen 761 GPVGTRGARILWACDGRIVIVVGFD-KSSERQVQMYDAQTLDLRPL-YTQVLDVAPSPLVPHYDYDSNVLF-LTGKGDRF 837 (1012)
T ss_pred CCccCcceeEEEEecCcEEEEeccc-ccchhhhhhhhhhhccCCcc-eeeeecccCccccccccCCCceEE-EecCCCce
Confidence 222 2 3667 36666665554 35668899999876664332 233333322222 23223333 34455555
Q ss_pred EEEEEE
Q 001567 567 IFHVKL 572 (1052)
Q Consensus 567 l~~~~~ 572 (1052)
+|-|++
T Consensus 838 v~~yEv 843 (1012)
T KOG1445|consen 838 VNMYEV 843 (1012)
T ss_pred EEEEEe
Confidence 555554
No 161
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.44 E-value=4.2e-12 Score=143.07 Aligned_cols=248 Identities=15% Similarity=0.106 Sum_probs=162.9
Q ss_pred ccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee-----cCCCCeE-EEEEcCCC-CEEEEEee
Q 001567 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQ-QILAVGTR 276 (1052)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-----~gh~~~v-~va~spd~-~~lAsgs~ 276 (1052)
+..|...|.++.| -|-...++++++|.+++.||....+.. .||...| +++|.|.. ..+++|+.
T Consensus 96 ~~aH~nAifDl~w----------apge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgR 165 (720)
T KOG0321|consen 96 PLAHKNAIFDLKW----------APGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGR 165 (720)
T ss_pred cccccceeEeecc----------CCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccC
Confidence 4567778888876 352346788889999999998866543 7899999 99999964 56899999
Q ss_pred CCeEEEEecCCCCc-e-------eE-EEEe-------ecCC--CCCCCCCCeeE---EEECCCCCEEEEEEc-CCcEEEE
Q 001567 277 RGVVELYDLAESAS-L-------IR-TVSL-------YDWG--YSMDDTGPVSC---IAWTPDNSAFAVGWK-SRGLTVW 334 (1052)
Q Consensus 277 Dg~V~vwd~~~~~~-~-------~~-~l~~-------~~~~--~~~~h~g~V~~---l~~SpDg~~Lasg~~-Dg~v~vW 334 (1052)
||.|.|||+...+. . +. ...+ ...+ -..+|.+.|.+ +-+..|...||+++. |++|+||
T Consensus 166 Dg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVW 245 (720)
T KOG0321|consen 166 DGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVW 245 (720)
T ss_pred CCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEE
Confidence 99999999865220 0 00 0000 0000 01135555665 667789999999988 9999999
Q ss_pred EcCCCeEEEEecc--------cc--cCceeeeeEcCCCCCCccceeeee--eeeEEecCCceE--EEEecCCcc---cE-
Q 001567 335 SVSGCRLMSTIRQ--------IS--LSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRL--YAIEEGSSE---RV- 396 (1052)
Q Consensus 335 d~~~~~l~~tl~~--------~~--~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l--~~~~~~~~~---~v- 396 (1052)
|+.........+- |. ...+.++.....| ...++++. ++.+|+..+... .....++.. .+
T Consensus 246 DLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG---t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk 322 (720)
T KOG0321|consen 246 DLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG---TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVK 322 (720)
T ss_pred eecccccccccCCCcccCccCcccceeeeEEEEecCCC---CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeee
Confidence 9975433222110 10 1123344443333 13455554 888898765432 222223211 12
Q ss_pred EEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccC-CCEEEEEeCCc
Q 001567 397 LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGLHG 474 (1052)
Q Consensus 397 ~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~Spd-G~~lavag~dG 474 (1052)
-.+++ +.++++|+.|....+|.+...+. -|..+.||.-.|.+++|.|. -.-+|++++|-
T Consensus 323 s~lSpd~~~l~SgSsd~~ayiw~vs~~e~-------------------~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~ 383 (720)
T KOG0321|consen 323 SELSPDDCSLLSGSSDEQAYIWVVSSPEA-------------------PPALLLGHTREVTTVRWLPSATTPVATCSDDF 383 (720)
T ss_pred eecCCCCceEeccCCCcceeeeeecCccC-------------------ChhhhhCcceEEEEEeeccccCCCceeeccCc
Confidence 34455 88999999999999999876555 25678899999999999653 23456669999
Q ss_pred eE-EEEccCC
Q 001567 475 LI-LYDIRQK 483 (1052)
Q Consensus 475 ~i-lwd~~s~ 483 (1052)
.+ +|++..+
T Consensus 384 ~~kiW~l~~~ 393 (720)
T KOG0321|consen 384 RVKIWRLSNG 393 (720)
T ss_pred ceEEEeccCc
Confidence 99 9999554
No 162
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=2.8e-11 Score=121.85 Aligned_cols=258 Identities=12% Similarity=0.095 Sum_probs=161.5
Q ss_pred cCccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEE
Q 001567 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (1052)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~ll 146 (1052)
+-.+.+-+|||-+++++++..+|.|-++.+..-...-. .+++ -...++..++++++..+....+.++
T Consensus 10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa----~~~g---------k~~iv~eqahdgpiy~~~f~d~~Ll 76 (325)
T KOG0649|consen 10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA----EPPG---------KLKIVPEQAHDGPIYYLAFHDDFLL 76 (325)
T ss_pred HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc----CCCC---------CcceeeccccCCCeeeeeeehhhee
Confidence 34456778999999999999999999999864321110 1110 0111223567888888887655544
Q ss_pred EEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEE
Q 001567 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1052)
Q Consensus 147 v~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (1052)
.+.||.|+-|.|+.+....-. . ..--..+|...+ .-.-..|..| ++
T Consensus 77 -s~gdG~V~gw~W~E~~es~~~-K-----~lwe~~~P~~~~-----------------~~evPeINam----------~l 122 (325)
T KOG0649|consen 77 -SGGDGLVYGWEWNEEEESLAT-K-----RLWEVKIPMQVD-----------------AVEVPEINAM----------WL 122 (325)
T ss_pred -eccCceEEEeeehhhhhhccc-h-----hhhhhcCccccC-----------------cccCCcccee----------Ee
Confidence 455699999999865532110 0 000000010000 0001123333 33
Q ss_pred eeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCC
Q 001567 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (1052)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~ 302 (1052)
.|...-+++++.|+.+..||..+++.. .||++.+ |++--.....|.+|++||+||+||..+ ++++.++...+.+.
T Consensus 123 dP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~ 201 (325)
T KOG0649|consen 123 DPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPN 201 (325)
T ss_pred ccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEeccccChh
Confidence 444444445558888888998887543 8999999 888756666789999999999999998 88888877654332
Q ss_pred -CCCCCC-CeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee--eeeEE
Q 001567 303 -SMDDTG-PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQW 378 (1052)
Q Consensus 303 -~~~h~g-~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W 378 (1052)
.+.|.| .|-+++-+. .+|+.|+. ..+.+|++....+.+++.-. ..|..+.|..+ ..++.|- .+..|
T Consensus 202 ~lRp~~g~wigala~~e--dWlvCGgG-p~lslwhLrsse~t~vfpip--a~v~~v~F~~d-----~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 202 LLRPDWGKWIGALAVNE--DWLVCGGG-PKLSLWHLRSSESTCVFPIP--ARVHLVDFVDD-----CVLIGGEGNHVQSY 271 (325)
T ss_pred hcCcccCceeEEEeccC--ceEEecCC-CceeEEeccCCCceEEEecc--cceeEeeeecc-----eEEEeccccceeee
Confidence 233444 466666544 47777765 68999999988887777642 44666777543 3444442 56677
Q ss_pred ecCC
Q 001567 379 DEYG 382 (1052)
Q Consensus 379 ~~~~ 382 (1052)
...|
T Consensus 272 ~l~G 275 (325)
T KOG0649|consen 272 TLNG 275 (325)
T ss_pred eecc
Confidence 6644
No 163
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=2.9e-12 Score=138.99 Aligned_cols=205 Identities=17% Similarity=0.213 Sum_probs=130.1
Q ss_pred CceEEEEeeCCeEEEEE-cCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEec
Q 001567 21 SQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1052)
Q Consensus 21 ~~~vv~fSpdg~llA~~-sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~ 99 (1052)
.+.+++|+.||+.+|++ +|++++||+.. .-. ...+-.++++++.++.|||||+.||+.++| ..+||+++.+
T Consensus 146 ~~k~vaf~~~gs~latgg~dg~lRv~~~P-s~~------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 146 QQKVVAFNGDGSKLATGGTDGTLRVWEWP-SML------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred cceEEEEcCCCCEeeeccccceEEEEecC-cch------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC
Confidence 46899999999999998 69999999974 211 122335678999999999999999999999 7999999855
Q ss_pred CceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccc
Q 001567 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1052)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i 179 (1052)
... ..... .+.++++..+. +.-++..
T Consensus 218 ~~~-a~~t~-------------------------------~~k~~~~~~cR------F~~d~~~---------------- 243 (398)
T KOG0771|consen 218 AAL-ARKTP-------------------------------FSKDEMFSSCR------FSVDNAQ---------------- 243 (398)
T ss_pred chh-hhcCC-------------------------------cccchhhhhce------ecccCCC----------------
Confidence 210 00000 00111111110 0000000
Q ss_pred eeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeec----ccceecC
Q 001567 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI----KIDKELG 255 (1052)
Q Consensus 180 ~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~----~~~~~~g 255 (1052)
.... .++...|-|.+..+ .+.+|+.. ..+....
T Consensus 244 ------------------------------~~l~--------laa~~~~~~~v~~~-----~~~~w~~~~~l~~~~~~~~ 280 (398)
T KOG0771|consen 244 ------------------------------ETLR--------LAASQFPGGGVRLC-----DISLWSGSNFLRLRKKIKR 280 (398)
T ss_pred ------------------------------ceEE--------EEEecCCCCceeEE-----Eeeeeccccccchhhhhhc
Confidence 0000 00011111221110 12223321 1111133
Q ss_pred CCCeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 001567 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1052)
Q Consensus 256 h~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd 335 (1052)
+....++++|++|+++|.|+.||.|.||+..+ -+.++..+. .|.+.|+.+.|+||.+++++-+.|.+..|-.
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~-lq~~~~vk~-------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKS-LQRLQYVKE-------AHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCcEEEEEece-eeeeEeehh-------hheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 43444999999999999999999999999876 554444433 3999999999999999999999999998888
Q ss_pred cCC
Q 001567 336 VSG 338 (1052)
Q Consensus 336 ~~~ 338 (1052)
+..
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 754
No 164
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.43 E-value=3e-11 Score=130.10 Aligned_cols=132 Identities=16% Similarity=0.299 Sum_probs=106.0
Q ss_pred eeCCc-EEEEEecCCceeeeeecccce------------ecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCC----
Q 001567 227 YSNGQ-LMSCSVSKKGLKLAEFIKIDK------------ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES---- 288 (1052)
Q Consensus 227 s~dG~-~~~~~~~d~~i~~w~~~~~~~------------~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~---- 288 (1052)
..++. .+++++.|..+++|....... +..|..+| ++.|+|+|.+||+|+.+|.|.+|...+.
T Consensus 22 q~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~ 101 (434)
T KOG1009|consen 22 QKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFD 101 (434)
T ss_pred ccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCcc
Confidence 34444 899999999999997654321 15799999 9999999999999999999999987620
Q ss_pred --C-----c----eeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeee
Q 001567 289 --A-----S----LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 357 (1052)
Q Consensus 289 --~-----~----~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~ 357 (1052)
+ + ..+.+. +|...|..++|+||+.++++|+.|.++++||+..|.+.+.+.+| ...|..++
T Consensus 102 ~d~e~~~~ke~w~v~k~lr--------~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh-~~yvqgva 172 (434)
T KOG1009|consen 102 ADTEADLNKEKWVVKKVLR--------GHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH-EHYVQGVA 172 (434)
T ss_pred ccchhhhCccceEEEEEec--------ccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc-ccccceee
Confidence 1 0 112223 39999999999999999999999999999999999999999888 66777888
Q ss_pred EcCCCCCCccceee
Q 001567 358 VKPNQDCKYEPLMS 371 (1052)
Q Consensus 358 ~sp~~~~~~~~l~s 371 (1052)
+.|-+ +.+++
T Consensus 173 wDpl~----qyv~s 182 (434)
T KOG1009|consen 173 WDPLN----QYVAS 182 (434)
T ss_pred cchhh----hhhhh
Confidence 77766 55553
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.40 E-value=1.2e-11 Score=129.68 Aligned_cols=251 Identities=13% Similarity=0.135 Sum_probs=168.2
Q ss_pred cCCCccEEEEEecCCcc---eEEEEeeCCc--EEEEEecCCceeeeeecccceecCCCCeE-EEEEcCC----CCEEEEE
Q 001567 205 FPISSAIIWLELCLPMR---LLFVLYSNGQ--LMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPE----QQILAVG 274 (1052)
Q Consensus 205 ~~~~~~i~~i~~~~~~~---~~~~~s~dG~--~~~~~~~d~~i~~w~~~~~~~~~gh~~~v-~va~spd----~~~lAsg 274 (1052)
.+++..|..+.|++... .-+..+.-|+ .+.-.-.|+.+++.+.... .+|.... .++|+-| ..++|+|
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D---~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYAD---EDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccC---CCCCcceEEEEEEecCCCCCeeEEee
Confidence 34556777777765432 1111112222 2222233444443322211 3455555 7777654 5689999
Q ss_pred eeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCC-CEEEEEEcCCcEEEEEcCCCeEEEEecc--cccC
Q 001567 275 TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTIRQ--ISLS 351 (1052)
Q Consensus 275 s~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg-~~Lasg~~Dg~v~vWd~~~~~l~~tl~~--~~~~ 351 (1052)
+.-|.|+|.|+.. ++....+.+ |.+.|+.+.|.|+. +++.+|+.|.+|++|++.+..+++.+.| .|..
T Consensus 112 G~~GvIrVid~~~-~~~~~~~~g--------hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd 182 (385)
T KOG1034|consen 112 GYLGVIRVIDVVS-GQCSKNYRG--------HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD 182 (385)
T ss_pred cceeEEEEEecch-hhhccceec--------cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC
Confidence 9999999999987 777777777 99999999999974 7999999999999999999999998875 3378
Q ss_pred ceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEE----------------------------EecCCcccEEEEe
Q 001567 352 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYA----------------------------IEEGSSERVLIFS 400 (1052)
Q Consensus 352 ~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~----------------------------~~~~~~~~v~~~s 400 (1052)
.|-++.|++++ +.++|++ ++++|.....+..- +..-|.+.|-+..
T Consensus 183 eVLSvD~~~~g----d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr 258 (385)
T KOG1034|consen 183 EVLSVDFSLDG----DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR 258 (385)
T ss_pred cEEEEEEcCCC----CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence 89999999999 8888887 99999987432111 1122444444445
Q ss_pred c-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccC-------cccccCCCcEEEE--EEccCCCEEEEE
Q 001567 401 F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-------VSYISQNWPVQHV--AASKDGMFLAVA 470 (1052)
Q Consensus 401 ~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p-------~~~~~h~~~V~~v--a~SpdG~~lava 470 (1052)
| +..++|-|-++.+..|...+-++. |+.++.| .++.-.+..|+.+ +|+|-++.||.|
T Consensus 259 w~gd~ilSkscenaI~~w~pgkl~e~-------------~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g 325 (385)
T KOG1034|consen 259 WFGDFILSKSCENAIVCWKPGKLEES-------------IHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG 325 (385)
T ss_pred HHhhheeecccCceEEEEecchhhhh-------------hhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence 5 778888888888888876332221 1211111 1222233445555 456779999999
Q ss_pred eCCceE-EEEccCCc
Q 001567 471 GLHGLI-LYDIRQKK 484 (1052)
Q Consensus 471 g~dG~i-lwd~~s~~ 484 (1052)
++.|.+ +||+....
T Consensus 326 nq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 326 NQSGKVYVWDLDNNE 340 (385)
T ss_pred cCCCcEEEEECCCCC
Confidence 999999 99997653
No 166
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1e-12 Score=157.55 Aligned_cols=228 Identities=18% Similarity=0.225 Sum_probs=171.8
Q ss_pred EEEEEecCCceeeeeeccc---ce------ecCCCCeE-EEEEcCCCC-EEEEEeeCCeEEEEecCCCCceeEEEEeecC
Q 001567 232 LMSCSVSKKGLKLAEFIKI---DK------ELGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (1052)
Q Consensus 232 ~~~~~~~d~~i~~w~~~~~---~~------~~gh~~~v-~va~spd~~-~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~ 300 (1052)
+++.|..||.|.+|+.... .. ...|.+.| .+.||+.+. +||+|+.||.|.|||+.. .+.-.+..
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn-~~tP~~~~---- 156 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNK-PETPFTPG---- 156 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCC-cCCCCCCC----
Confidence 4777788999999987652 11 15799999 999999766 999999999999999976 22111111
Q ss_pred CCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEcCCCeEEEEeccccc-CceeeeeEcCCCCCCccceeeee----e
Q 001567 301 GYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL-SSISSPIVKPNQDCKYEPLMSGT----S 374 (1052)
Q Consensus 301 ~~~~~h~g~V~~l~~Sp-Dg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~-~~v~s~~~sp~~~~~~~~l~sg~----~ 374 (1052)
...-.+.|.+++|.. ..+.||+|+.+|...|||+...+.+-.+..++. ..++.++|+|+.. +.-.++++. .
T Consensus 157 --~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a-Tql~~As~dd~~Pv 233 (1049)
T KOG0307|consen 157 --SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA-TQLLVASGDDSAPV 233 (1049)
T ss_pred --CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc-eeeeeecCCCCCce
Confidence 112467899999997 456899999999999999998877766665533 3488999999973 223344444 7
Q ss_pred eeEEecCC-ceEEEEecCCcccEEEEec----cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccc
Q 001567 375 MMQWDEYG-YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (1052)
Q Consensus 375 ~~~W~~~~-~~l~~~~~~~~~~v~~~s~----~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~ 449 (1052)
+.+||..- .....+..+|...|+.+++ .+.++|.+.|+.+..|+..+++. ...+-
T Consensus 234 iqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv--------------------l~~~p 293 (1049)
T KOG0307|consen 234 IQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV--------------------LGELP 293 (1049)
T ss_pred eEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE--------------------eeecC
Confidence 88999643 3345556789999999888 36788999999999999877654 22222
Q ss_pred cCCCcEEEEEEccCCC-EEEEEeCCceE-EEEccCCcEEE
Q 001567 450 SQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKWRV 487 (1052)
Q Consensus 450 ~h~~~V~~va~SpdG~-~lavag~dG~i-lwd~~s~~w~~ 487 (1052)
..+..+..+.|+|... .+|+++-||.| +|++.+..|..
T Consensus 294 ~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~~ 333 (1049)
T KOG0307|consen 294 AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTDL 333 (1049)
T ss_pred CCCcceeeeeecCCCcchhhhheeccceeeeeeecCCccc
Confidence 3456688999998765 89999999999 99998876554
No 167
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.4e-12 Score=154.40 Aligned_cols=197 Identities=15% Similarity=0.213 Sum_probs=145.2
Q ss_pred cCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee--c---CCCCeE-EEEEcCC-CCEEEEEeeC
Q 001567 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--L---GSGDAV-CASIAPE-QQILAVGTRR 277 (1052)
Q Consensus 205 ~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~---gh~~~v-~va~spd-~~~lAsgs~D 277 (1052)
..|.+.|..++|++. .|.++++|++++.|.+||..+.+.- . .-.+-| |++||.+ ...||+|+.+
T Consensus 113 ~~h~G~V~gLDfN~~---------q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s 183 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPF---------QGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS 183 (1049)
T ss_pred cccCCceeeeecccc---------CCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCC
Confidence 457788888887442 2448899999999999999875432 1 123456 9999986 5679999999
Q ss_pred CeEEEEecCCCCceeEEEEeecCCCCCCCC--CCeeEEEECCCC-CEEEEEEcCC---cEEEEEcCC-CeEEEEeccccc
Q 001567 278 GVVELYDLAESASLIRTVSLYDWGYSMDDT--GPVSCIAWTPDN-SAFAVGWKSR---GLTVWSVSG-CRLMSTIRQISL 350 (1052)
Q Consensus 278 g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~--g~V~~l~~SpDg-~~Lasg~~Dg---~v~vWd~~~-~~l~~tl~~~~~ 350 (1052)
|.+.|||++. .+.+-.+.. |. ..+..++|+||+ ..++++++|. .|.+||+.. .....++++| .
T Consensus 184 g~~~iWDlr~-~~pii~ls~--------~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H-~ 253 (1049)
T KOG0307|consen 184 GRAVIWDLRK-KKPIIKLSD--------TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH-Q 253 (1049)
T ss_pred CCceeccccC-CCccccccc--------CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc-c
Confidence 9999999987 454444443 32 347899999986 4777777664 699999854 3456777777 7
Q ss_pred CceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccEEEEec----cceeeeeccCCceeeeEeeecC
Q 001567 351 SSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGE 423 (1052)
Q Consensus 351 ~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~----~k~~~s~s~d~~v~~w~~~~~~ 423 (1052)
..|.++.|++.+. ++++|+. .+++|+.++++.+.......+....+.| -..++..+.||.|.+..+....
T Consensus 254 ~GilslsWc~~D~---~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 254 RGILSLSWCPQDP---RLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeccCCCCc---hhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 8899999988762 5566555 8999999999999888766666755555 2356678889999888765443
No 168
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=4.1e-10 Score=132.26 Aligned_cols=337 Identities=13% Similarity=0.141 Sum_probs=220.3
Q ss_pred eEEEEeeCCeEEEEEcCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCce
Q 001567 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (1052)
Q Consensus 23 ~vv~fSpdg~llA~~sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~ 102 (1052)
.+|.+++-|.+.+++.+..+.+|+..++......+. ....|.-..++.++||.++++|++-.||.|.+|.=- +.
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~---~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~-~~-- 237 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRD---ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDF-GS-- 237 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccceeeccch---hhhhhcccceeEEeccccceEEEeccCCcEEEEecc-cc--
Confidence 456688999999999999999999975442122221 222222235789999999999999999999999731 10
Q ss_pred eecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceee
Q 001567 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (1052)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i 182 (1052)
++ .+-+..++.|....
T Consensus 238 --------------------------------------~~-------~~~t~t~lHWH~~~------------------- 253 (792)
T KOG1963|consen 238 --------------------------------------SD-------DSETCTLLHWHHDE------------------- 253 (792)
T ss_pred --------------------------------------cc-------ccccceEEEecccc-------------------
Confidence 00 00122334454221
Q ss_pred cccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee--cCCCCeE
Q 001567 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV 260 (1052)
Q Consensus 183 ~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~gh~~~v 260 (1052)
|.+ ++|++||.++++|+..+.+-+|...++++. +--..++
T Consensus 254 ----------------------------V~~----------L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I 295 (792)
T KOG1963|consen 254 ----------------------------VNS----------LSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPI 295 (792)
T ss_pred ----------------------------cce----------eEEecCCceEeecccceEEEEEeecCCCcccccccCCee
Confidence 222 456899999999999999999988776543 4445777
Q ss_pred -EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCC---CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 001567 261 -CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY---SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1052)
Q Consensus 261 -~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~---~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~ 336 (1052)
.+.+|||+.+.++.++|..|.+-...+ .....++++..++. .....+-.+.++++|--+.++-.+..|.|.+||+
T Consensus 296 ~~i~vS~ds~~~sl~~~DNqI~li~~~d-l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 296 LHIVVSPDSDLYSLVLEDNQIHLIKASD-LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL 374 (792)
T ss_pred EEEEEcCCCCeEEEEecCceEEEEeccc-hhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence 999999999999999999999998865 55455555544331 2234566788999997777888888999999999
Q ss_pred CCCeEEEEecc----ccc------CceeeeeEcCCCCCCccceeeee-------------eeeEEecCCc----eEEEE-
Q 001567 337 SGCRLMSTIRQ----ISL------SSISSPIVKPNQDCKYEPLMSGT-------------SMMQWDEYGY----RLYAI- 388 (1052)
Q Consensus 337 ~~~~l~~tl~~----~~~------~~v~s~~~sp~~~~~~~~l~sg~-------------~~~~W~~~~~----~l~~~- 388 (1052)
.+...+..++- +.. -.+++++.+..+ ..++++- ..++|..+.. .|...
T Consensus 375 ~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g----s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I 450 (792)
T KOG1963|consen 375 YTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG----SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI 450 (792)
T ss_pred cccceeeeEEEEeecccCCcceeEEeeeeehhhccc----eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE
Confidence 87665544431 111 234455555544 3333321 6778865432 22222
Q ss_pred ecCCcccE--EEE-ec--cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccC
Q 001567 389 EEGSSERV--LIF-SF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD 463 (1052)
Q Consensus 389 ~~~~~~~v--~~~-s~--~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~Spd 463 (1052)
...|...+ .++ .+ ...+++++.|+.+++|.+...++- ..-...|....+- .| |+.|+..++||.|
T Consensus 451 ~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~-------~k~~s~W~c~~i~-sy--~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 451 NNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI-------YKKSSNWTCKAIG-SY--HKTPITALCFSQD 520 (792)
T ss_pred ecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc-------CcCccceEEeeee-cc--ccCcccchhhcCC
Confidence 24566554 222 22 236889999999999997433320 0112245433322 24 8889999999999
Q ss_pred CCEEEEEeCCceE-EEEccCC
Q 001567 464 GMFLAVAGLHGLI-LYDIRQK 483 (1052)
Q Consensus 464 G~~lavag~dG~i-lwd~~s~ 483 (1052)
|..||+|- ++++ +||..+.
T Consensus 521 Gslla~s~-~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 521 GSLLAVSF-DDTITIWDYDTK 540 (792)
T ss_pred CcEEEEec-CCEEEEecCCCh
Confidence 98887665 5566 9998763
No 169
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=2.5e-09 Score=125.83 Aligned_cols=292 Identities=12% Similarity=0.154 Sum_probs=166.0
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCC---CCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCC
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE---SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~---~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg 329 (1052)
..|.-.. |.++||.++++|+|-.||.|.+|.--. .....+.++- |...|++++||+||.+|.||+..|
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW--------H~~~V~~L~fS~~G~~LlSGG~E~ 273 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW--------HHDEVNSLSFSSDGAYLLSGGREG 273 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe--------cccccceeEEecCCceEeecccce
Confidence 4566666 999999999999999999999997321 1123345565 999999999999999999999999
Q ss_pred cEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee-eeeEEecCCceEEEEecC---C-------cc---c
Q 001567 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEG---S-------SE---R 395 (1052)
Q Consensus 330 ~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~~---~-------~~---~ 395 (1052)
.+.+|.+.+++ ..-|.-- .+.+..+.+||+++ .-.+..+. ++.+-...+-.+..+..| . .. .
T Consensus 274 VLv~Wq~~T~~-kqfLPRL-gs~I~~i~vS~ds~--~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t 349 (792)
T KOG1963|consen 274 VLVLWQLETGK-KQFLPRL-GSPILHIVVSPDSD--LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTT 349 (792)
T ss_pred EEEEEeecCCC-ccccccc-CCeeEEEEEcCCCC--eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccce
Confidence 99999998876 2222222 36788999999872 11111111 222222211111111111 0 11 1
Q ss_pred EEEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeC--
Q 001567 396 VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-- 472 (1052)
Q Consensus 396 v~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~-- 472 (1052)
.+++++ .+.++-.+..+.+..+++.+... ++-++-.+. ........+.-+|+.++.+.+|.++||+-.
T Consensus 350 ~~~idpr~~~~vln~~~g~vQ~ydl~td~~-i~~~~v~~~--------n~~~~~~n~~v~itav~~~~~gs~maT~E~~~ 420 (792)
T KOG1963|consen 350 GVSIDPRTNSLVLNGHPGHVQFYDLYTDST-IYKLQVCDE--------NYSDGDVNIQVGITAVARSRFGSWMATLEARI 420 (792)
T ss_pred eEEEcCCCCceeecCCCceEEEEeccccce-eeeEEEEee--------cccCCcceeEEeeeeehhhccceEEEEeeeee
Confidence 266666 56666667778888888765443 221110000 000011123446888899999999998743
Q ss_pred ------CceE---EEEc--cCCcEEEec--CccceeeeEEEEEEEe--CCEEEEEEEecCCCeEEEEEeeCC---CCCCc
Q 001567 473 ------HGLI---LYDI--RQKKWRVFG--DITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY---HLDQS 534 (1052)
Q Consensus 473 ------dG~i---lwd~--~s~~w~~f~--~~~~e~~~~v~gl~W~--~~~li~~~~~~~~~~~elrly~~~---~ld~~ 534 (1052)
||.+ .|-. ++..|.+-. +.-|+..+....+.-. .+..+++ +.+..+++|... +....
T Consensus 421 d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta-----~~dg~~KiW~~~~~~n~~k~ 495 (792)
T KOG1963|consen 421 DKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTA-----SVDGDFKIWVFTDDSNIYKK 495 (792)
T ss_pred hhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEe-----ccCCeEEEEEEecccccCcC
Confidence 3333 4543 334454322 1123332332222211 1233333 455678999873 22222
Q ss_pred ceeEE-------eecCCccEEEEeeCCEEEEEEcCCeEEEEEEEE
Q 001567 535 SLLCR-------KSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL 572 (1052)
Q Consensus 535 ~~l~~-------~~~~~~~~~~s~~~~~llv~~~d~~i~l~~~~~ 572 (1052)
.-.|. +..|....+++-+| .+++...+..|.+|++.-
T Consensus 496 ~s~W~c~~i~sy~k~~i~a~~fs~dG-slla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 496 SSNWTCKAIGSYHKTPITALCFSQDG-SLLAVSFDDTITIWDYDT 539 (792)
T ss_pred ccceEEeeeeccccCcccchhhcCCC-cEEEEecCCEEEEecCCC
Confidence 22222 12233333444444 666667788999999863
No 170
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=1.1e-11 Score=134.70 Aligned_cols=192 Identities=14% Similarity=0.206 Sum_probs=141.0
Q ss_pred CCCEEEEEeeCCeEEEEecCCCCceeE--EEE----------eecCCCCCCCCCCeeEEEECCCC-CEEEEEEcCCcEEE
Q 001567 267 EQQILAVGTRRGVVELYDLAESASLIR--TVS----------LYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTV 333 (1052)
Q Consensus 267 d~~~lAsgs~Dg~V~vwd~~~~~~~~~--~l~----------~~~~~~~~~h~g~V~~l~~SpDg-~~Lasg~~Dg~v~v 333 (1052)
.|+++|+|+.|..|.|||++--..... +|. ++......+|+..|.+++|.-+- +.|||||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 378999999999999999864222111 111 00001134699999999999865 59999999999999
Q ss_pred EEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCC----ceEEEEecCCcccEEEEec--cce
Q 001567 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG----YRLYAIEEGSSERVLIFSF--GKC 404 (1052)
Q Consensus 334 Wd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~----~~l~~~~~~~~~~v~~~s~--~k~ 404 (1052)
||+.++++..++..| ...|+++.|+|..+ ..+++|+ ++.+.+... +.-|... +. -..+.+.+ ...
T Consensus 271 WD~~~g~p~~s~~~~-~k~Vq~l~wh~~~p---~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~-g~-VEkv~w~~~se~~ 344 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHH-GKKVQTLEWHPYEP---SVLLSGSYDGTVALKDCRDPSNSGKEWKFD-GE-VEKVAWDPHSENS 344 (463)
T ss_pred EEcCCCCcceehhhc-CCceeEEEecCCCc---eEEEeccccceEEeeeccCccccCceEEec-cc-eEEEEecCCCcee
Confidence 999999999999866 78899999999863 6788887 777776542 2223321 11 11144444 445
Q ss_pred eeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccC-CCEEEEEeCCceE-EEEccC
Q 001567 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQ 482 (1052)
Q Consensus 405 ~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~Spd-G~~lavag~dG~i-lwd~~s 482 (1052)
++.+..||+++-.|.+..+. ...+...|+.+|.++++++. -.+++++|.|+.+ +|++..
T Consensus 345 f~~~tddG~v~~~D~R~~~~-------------------~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPGK-------------------PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred EEEecCCceEEeeecCCCCC-------------------ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 66778899999988877655 23567789999999999875 4578999999999 999865
Q ss_pred C
Q 001567 483 K 483 (1052)
Q Consensus 483 ~ 483 (1052)
.
T Consensus 406 ~ 406 (463)
T KOG0270|consen 406 D 406 (463)
T ss_pred C
Confidence 4
No 171
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.37 E-value=1.5e-09 Score=125.25 Aligned_cols=267 Identities=22% Similarity=0.311 Sum_probs=188.3
Q ss_pred EEeeCCcEEEEEecCCceeeeeecccc-ee---cC-CCCeE-EEEE-cCCCC-EEEEEee-CCeEEEEecCCCCceeEEE
Q 001567 225 VLYSNGQLMSCSVSKKGLKLAEFIKID-KE---LG-SGDAV-CASI-APEQQ-ILAVGTR-RGVVELYDLAESASLIRTV 295 (1052)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~w~~~~~~-~~---~g-h~~~v-~va~-spd~~-~lAsgs~-Dg~V~vwd~~~~~~~~~~l 295 (1052)
.+.++|..++.++.++.+.+|+..... .. .+ +...+ .+.+ ++++. .++..+. |+.+++|+..........+
T Consensus 72 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 151 (466)
T COG2319 72 AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL 151 (466)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEE
Confidence 346677777777778888888876653 21 23 22244 5555 88888 5555444 9999999987523555666
Q ss_pred EeecCCCCCCCCCCeeEEEECCCCCEEEEEEc-CCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCcc-ceeeee
Q 001567 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLMSGT 373 (1052)
Q Consensus 296 ~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~-Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~-~l~sg~ 373 (1052)
.. |...|.+++|+|++..+++++. |+.+++|++..+....++.+| ...+..++++|++ . .+++++
T Consensus 152 ~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~~~~~~~ 218 (466)
T COG2319 152 EG--------HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-TDPVSSLAFSPDG----GLLIASGS 218 (466)
T ss_pred ec--------CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC-CCceEEEEEcCCc----ceEEEEec
Confidence 66 9999999999999999999986 999999999988888888886 7889999999887 4 444423
Q ss_pred ---eeeEEecCCceEEE-EecCCccc-EEEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcc
Q 001567 374 ---SMMQWDEYGYRLYA-IEEGSSER-VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (1052)
Q Consensus 374 ---~~~~W~~~~~~l~~-~~~~~~~~-v~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~ 447 (1052)
++.+|+...+..+. ...+|... +..+++ +..+++++.|+.+++|+.......+ ..
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-------------------~~ 279 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLL-------------------RT 279 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEE-------------------EE
Confidence 77799887777777 57777666 445666 5577789999999999987554311 11
Q ss_pred cccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecC-ccceeeeEEEEEEEeC--CEEEEEEEecCCCeEEE
Q 001567 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYEL 523 (1052)
Q Consensus 448 ~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~-~~~e~~~~v~gl~W~~--~~li~~~~~~~~~~~el 523 (1052)
+.+|..+|.++.|+|++..+++++.|+.+ +|+..+........ ..++. .+..+.|.. ..+..+. ..+..+
T Consensus 280 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~d~~~ 353 (466)
T COG2319 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSLLVSGG----SDDGTI 353 (466)
T ss_pred EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCEEEEee----cCCCcE
Confidence 14678899999999999999999999888 99988776433222 12222 344555522 3444432 122556
Q ss_pred EEeeCC
Q 001567 524 LFYPRY 529 (1052)
Q Consensus 524 rly~~~ 529 (1052)
++|+..
T Consensus 354 ~~~~~~ 359 (466)
T COG2319 354 RLWDLR 359 (466)
T ss_pred EeeecC
Confidence 677664
No 172
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.36 E-value=1.6e-12 Score=149.78 Aligned_cols=225 Identities=15% Similarity=0.256 Sum_probs=165.2
Q ss_pred eEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEe
Q 001567 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1052)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~ 297 (1052)
+++++...|++++++++|.-+++|...+..++ .||...+ .++++.+..++|+++.|..|++|.+.+ +.++..+.+
T Consensus 194 yca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~-~~pvsvLrg 272 (1113)
T KOG0644|consen 194 YCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD-GAPVSVLRG 272 (1113)
T ss_pred eeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC-CchHHHHhc
Confidence 45777889999999999999999998887765 7999988 999999999999999999999999998 888888888
Q ss_pred ecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcC--------------CCeEEEEecccc--cC----------
Q 001567 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--------------GCRLMSTIRQIS--LS---------- 351 (1052)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~--------------~~~l~~tl~~~~--~~---------- 351 (1052)
|+|.|++++|||-- +.+.||++++||.. ++.+++++.... ..
T Consensus 273 --------htgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea 340 (1113)
T KOG0644|consen 273 --------HTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEA 340 (1113)
T ss_pred --------cccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccc
Confidence 99999999999954 77889999999985 222333322110 00
Q ss_pred ---ceeeeeEcCCC--------CCCccceeeee---eeeEEecCCceEEEEecCCcccEEEEec----cceeeeeccCCc
Q 001567 352 ---SISSPIVKPNQ--------DCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGM 413 (1052)
Q Consensus 352 ---~v~s~~~sp~~--------~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~----~k~~~s~s~d~~ 413 (1052)
.+-.+++..+. +.+ ...++.. ..+.|+..+|++.....+|.+.++++.+ .+...+++.||+
T Consensus 341 ~n~e~~~l~~~~~~lif~t~ssd~~-~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs 419 (1113)
T KOG0644|consen 341 RNHEFEQLAWRSNLLIFVTRSSDLS-SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS 419 (1113)
T ss_pred ccchhhHhhhhccceEEEecccccc-ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc
Confidence 00000000000 000 1111111 5678999999999988899888866665 556678999999
Q ss_pred eeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEc
Q 001567 414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1052)
Q Consensus 414 v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~ 480 (1052)
..+||+-.|.. +-.-..+ .+.+...+||+||+.++..-.-|.+ +...
T Consensus 420 t~iwdi~eg~p-------------------ik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 420 TIIWDIWEGIP-------------------IKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred eEeeecccCCc-------------------ceeeecc-cceeeccccCCCCceEecCCCCCceEEecc
Confidence 99999866543 1111234 3567788999999999988888877 5554
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.36 E-value=4.6e-11 Score=124.92 Aligned_cols=229 Identities=13% Similarity=0.130 Sum_probs=154.6
Q ss_pred eCCeEEEEEc-CCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCC
Q 001567 29 VNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGG 107 (1052)
Q Consensus 29 pdg~llA~~s-d~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~ 107 (1052)
|+..++|+.+ +.-|+|||.- .+..-++++ .-..+.+.-...+++|||||..|..| .+.+|++||+.-.....-
T Consensus 121 P~t~l~a~ssr~~PIh~wdaf-tG~lraSy~-~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~--- 194 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAF-TGKLRASYR-AYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCP--- 194 (406)
T ss_pred CccceeeeccccCceeeeecc-ccccccchh-hhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCc---
Confidence 6777888875 6789999995 665555553 22333444445689999999999876 567899999852221100
Q ss_pred CCCCCceeeeEeeeeccccccccccceEEEEeec---CCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecc
Q 001567 108 KQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD---NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHH 184 (1052)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d---~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~ 184 (1052)
+... ...++ .+..+.++|++.. .+.+.+++-..++-++.|++...-.
T Consensus 195 -------vy~t--~~~~k---~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~------------------ 244 (406)
T KOG2919|consen 195 -------VYTT--VTKGK---FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ------------------ 244 (406)
T ss_pred -------chhh--hhccc---ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee------------------
Confidence 0000 00000 1223445566543 2457777777788888888643211
Q ss_pred cCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEec-CCceeeeeeccccee----cCCCC-
Q 001567 185 FPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE----LGSGD- 258 (1052)
Q Consensus 185 s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-d~~i~~w~~~~~~~~----~gh~~- 258 (1052)
.+.+++..|+.+.| .+||..+++++. +..|-.||+...... ..|.+
T Consensus 245 ------------------llggh~gGvThL~~----------~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~ 296 (406)
T KOG2919|consen 245 ------------------LLGGHGGGVTHLQW----------CEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGD 296 (406)
T ss_pred ------------------eecccCCCeeeEEe----------ccCcCeecccccCCCeEEEEeehhccchhhhhhhhccC
Confidence 12467888998876 678888888775 556788998754321 34443
Q ss_pred ---eEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCC
Q 001567 259 ---AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (1052)
Q Consensus 259 ---~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg 329 (1052)
.|-....|++++||+|+.||.|++||+++.+.....+.. |...|+.+++.|-=..+|+++..+
T Consensus 297 TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~--------~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 297 TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN--------YSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred ccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc--------ccccccceecCcccceeeeccCce
Confidence 345566799999999999999999999986665555555 889999999999988889888654
No 174
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.35 E-value=7.2e-11 Score=129.34 Aligned_cols=205 Identities=13% Similarity=0.105 Sum_probs=152.0
Q ss_pred eCCcEEEEEecCCceeeeeecccc---eecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCC
Q 001567 228 SNGQLMSCSVSKKGLKLAEFIKID---KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (1052)
Q Consensus 228 ~dG~~~~~~~~d~~i~~w~~~~~~---~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~ 303 (1052)
+...++++++..+++++||..... .+.+|.+.| |+.+|-...+||+++..|.|.|..+.+ +....++..
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~~------ 161 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFTI------ 161 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-Cccccceec------
Confidence 334778888889999999987432 237999999 999999999999999999999999987 443444443
Q ss_pred CCCCCCeeEEEECCCCC-EEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccce-eeee---eeeEE
Q 001567 304 MDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT---SMMQW 378 (1052)
Q Consensus 304 ~~h~g~V~~l~~SpDg~-~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l-~sg~---~~~~W 378 (1052)
+....|.-+.|||..+ .|.+++++|.|.+||+.|..........|..+...++|+|.. +.+ ++-+ .+.++
T Consensus 162 -~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn----e~l~vsVG~Dkki~~y 236 (673)
T KOG4378|consen 162 -DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN----EALLVSVGYDKKINIY 236 (673)
T ss_pred -CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc----cceEEEecccceEEEe
Confidence 1123466999999876 667789999999999999887776655448889999999987 444 4433 77788
Q ss_pred ecCCceEEEEe-cCCcccEEEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccC-cccccCCCcE
Q 001567 379 DEYGYRLYAIE-EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWPV 455 (1052)
Q Consensus 379 ~~~~~~l~~~~-~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p-~~~~~h~~~V 455 (1052)
|....+....+ ..|.-.-++|.. |.+++.|+..|.+..+|+..... | .+...|...|
T Consensus 237 D~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~--------------------Pv~v~sah~~sV 296 (673)
T KOG4378|consen 237 DIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA--------------------PVAVRSAHDASV 296 (673)
T ss_pred ecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCC--------------------CceEeeecccce
Confidence 87655443322 123323366666 88999999999999999876555 4 3455788889
Q ss_pred EEEEEccCC
Q 001567 456 QHVAASKDG 464 (1052)
Q Consensus 456 ~~va~SpdG 464 (1052)
++++|-|.-
T Consensus 297 t~vafq~s~ 305 (673)
T KOG4378|consen 297 TRVAFQPSP 305 (673)
T ss_pred eEEEeeecc
Confidence 999996543
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.34 E-value=1.6e-10 Score=119.14 Aligned_cols=216 Identities=18% Similarity=0.206 Sum_probs=154.8
Q ss_pred CCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC--CCCEEEEEEcCCcEE
Q 001567 256 SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLT 332 (1052)
Q Consensus 256 h~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp--Dg~~Lasg~~Dg~v~ 332 (1052)
+-+.+ |+.|.|++..+|+-. |..|.+|+++...+....+.. ..+.+|+...++-+||| ||+.+++.++ +++.
T Consensus 122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~s---s~s~e~~~~ftsg~WspHHdgnqv~tt~d-~tl~ 196 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS---SESAEMRHSFTSGAWSPHHDGNQVATTSD-STLQ 196 (370)
T ss_pred HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecc---cccccccceecccccCCCCccceEEEeCC-CcEE
Confidence 33467 999999999998754 889999999873332333222 22234667788899999 8999998875 8999
Q ss_pred EEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCC-ceEEEEecCCcccEEEEec----cce
Q 001567 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLIFSF----GKC 404 (1052)
Q Consensus 333 vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~-~~l~~~~~~~~~~v~~~s~----~k~ 404 (1052)
.||+.+......++..|-..|..+.|.|+. ...+++++ .+++||... ...+....+|.-.++++.| .+.
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnk---q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNK---QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL 273 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCc---eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceE
Confidence 999999888888877546779999999985 24677776 899999864 4566777899999977776 567
Q ss_pred eeeeccCCceeeeEeeecCceEEEEecCCcchh-------eeeee--ccCcccccCCCcEEEEEEccCCC-EEEEEeCCc
Q 001567 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL-------KILHL--NLPVSYISQNWPVQHVAASKDGM-FLAVAGLHG 474 (1052)
Q Consensus 405 ~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~-------~w~~~--~~p~~~~~h~~~V~~va~SpdG~-~lavag~dG 474 (1052)
++|++.|..+.+|....-...--+..+++..+. +.+.+ ....+|..|...|.+++||.-.. .+|+-+.||
T Consensus 274 iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred EEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 889999999988876543332222223222211 11111 12348889999999999976544 567889999
Q ss_pred eEEEE
Q 001567 475 LILYD 479 (1052)
Q Consensus 475 ~ilwd 479 (1052)
.++-+
T Consensus 354 RviIs 358 (370)
T KOG1007|consen 354 RVIIS 358 (370)
T ss_pred eEEee
Confidence 98443
No 176
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.34 E-value=3.5e-11 Score=135.84 Aligned_cols=270 Identities=14% Similarity=0.216 Sum_probs=158.4
Q ss_pred ecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEE--EEeecCCCCCCCCCCeeEEEECCCC-CEEEEEEcC
Q 001567 253 ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRT--VSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKS 328 (1052)
Q Consensus 253 ~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~--l~~~~~~~~~~h~g~V~~l~~SpDg-~~Lasg~~D 328 (1052)
+..|..+| .+.|-|...+|++++.|.++++||+.. .++... +.+ |++.|.+++|.|+. ..+++|+.|
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-s~l~G~~~~~G--------H~~SvkS~cf~~~n~~vF~tGgRD 166 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-SRLVGGRLNLG--------HTGSVKSECFMPTNPAVFCTGGRD 166 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeecc-ceeecceeecc--------cccccchhhhccCCCcceeeccCC
Confidence 47899999 999999778899999999999999987 665554 444 99999999999965 589999999
Q ss_pred CcEEEEEcCCCeEEEEec--------ccccCceeeeeEcCCCCCCccceeeeeeeeEEecCCceEEEEecCCcccEEEEe
Q 001567 329 RGLTVWSVSGCRLMSTIR--------QISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFS 400 (1052)
Q Consensus 329 g~v~vWd~~~~~l~~tl~--------~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s 400 (1052)
|.+.|||..-.. +..+. .| ... . .|. .++. ..+.-|-+.++.+.. .|..+-
T Consensus 167 g~illWD~R~n~-~d~~e~~~~~~~~~~-n~~---p--tps-----kp~~--kr~~k~kA~s~ti~s-------svTvv~ 225 (720)
T KOG0321|consen 167 GEILLWDCRCNG-VDALEEFDNRIYGRH-NTA---P--TPS-----KPLK--KRIRKWKAASNTIFS-------SVTVVL 225 (720)
T ss_pred CcEEEEEEeccc-hhhHHHHhhhhhccc-cCC---C--CCC-----chhh--ccccccccccCceee-------eeEEEE
Confidence 999999985332 11110 11 100 0 011 1111 122223333222211 122222
Q ss_pred c--cceeeeecc-CCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccC---CCcEEEEEEccCCCEEEEEeCCc
Q 001567 401 F--GKCCLNRGV-SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ---NWPVQHVAASKDGMFLAVAGLHG 474 (1052)
Q Consensus 401 ~--~k~~~s~s~-d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h---~~~V~~va~SpdG~~lavag~dG 474 (1052)
| ...+++++. |+++++||+.....- +.... .. ...|.-| .-.+.++..+..|.+|.+.+.|+
T Consensus 226 fkDe~tlaSaga~D~~iKVWDLRk~~~~---~r~ep--------~~-~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 226 FKDESTLASAGAADSTIKVWDLRKNYTA---YRQEP--------RG-SDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred EeccceeeeccCCCcceEEEeecccccc---cccCC--------Cc-ccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 2 556666665 999999998754320 10000 00 0112222 22366677777899998888899
Q ss_pred eE-EEEccCCcEEEecC--ccceeeeEEE-EEEEeCCEEEEEEEecCCCeEEEEEeeCCCCCCcc--e-eEEeecCCccE
Q 001567 475 LI-LYDIRQKKWRVFGD--ITQEQKIQSK-GLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSS--L-LCRKSLLAKPI 547 (1052)
Q Consensus 475 ~i-lwd~~s~~w~~f~~--~~~e~~~~v~-gl~W~~~~li~~~~~~~~~~~elrly~~~~ld~~~--~-l~~~~~~~~~~ 547 (1052)
.| .||+.+-.-.-... ......|.+. .+.|.+.+++.+ +.+.+..+|...+..... + .+...+ ..+
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~Sg-----Ssd~~ayiw~vs~~e~~~~~l~Ght~eV--t~V 366 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSG-----SSDEQAYIWVVSSPEAPPALLLGHTREV--TTV 366 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEecc-----CCCcceeeeeecCccCChhhhhCcceEE--EEE
Confidence 99 99997644321111 1122234455 578888999988 444555666664222211 1 111111 111
Q ss_pred EEEee-CCEEEEEEcCCeEEEEEEE
Q 001567 548 VMDVY-EDYILVTYRPFDVHIFHVK 571 (1052)
Q Consensus 548 ~~s~~-~~~llv~~~d~~i~l~~~~ 571 (1052)
.-.+. -.-+++.++|..+++|++.
T Consensus 367 ~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 367 RWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred eeccccCCCceeeccCcceEEEecc
Confidence 11221 2235556899999999995
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.33 E-value=1.3e-10 Score=124.44 Aligned_cols=198 Identities=13% Similarity=0.148 Sum_probs=144.2
Q ss_pred cCCCCeE-EEEEcC-CCCEEEEEeeCCeEEEEecCCCC------ceeEEEEeecCCCCCCCCCCeeEEEECCC-CCEEEE
Q 001567 254 LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESA------SLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAV 324 (1052)
Q Consensus 254 ~gh~~~v-~va~sp-d~~~lAsgs~Dg~V~vwd~~~~~------~~~~~l~~~~~~~~~~h~g~V~~l~~SpD-g~~Las 324 (1052)
.||..+| .++|+| +...||+||.|.+|.||.+...+ +.+..+.+ |+..|--|+|+|- .+.|++
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g--------H~rrVg~V~wHPtA~NVLls 149 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG--------HQRRVGLVQWHPTAPNVLLS 149 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee--------cceeEEEEeecccchhhHhh
Confidence 6899999 999999 56789999999999999997632 23445666 9999999999996 469999
Q ss_pred EEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCCccc----EE
Q 001567 325 GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSER----VL 397 (1052)
Q Consensus 325 g~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~----v~ 397 (1052)
++.|.+|.+|++.++..+-++. | ..-|.++.|+.+| ..+++.+ ++++|++..++++....+|.+. ++
T Consensus 150 ag~Dn~v~iWnv~tgeali~l~-h-pd~i~S~sfn~dG----s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai 223 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITLD-H-PDMVYSMSFNRDG----SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI 223 (472)
T ss_pred ccCCceEEEEeccCCceeeecC-C-CCeEEEEEeccCC----ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE
Confidence 9999999999999999888888 5 7889999999999 8888777 8999999999998877666432 23
Q ss_pred EEeccceeeeecc----CCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeC-
Q 001567 398 IFSFGKCCLNRGV----SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL- 472 (1052)
Q Consensus 398 ~~s~~k~~~s~s~----d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~- 472 (1052)
-+.-++ ++|.+. +..+-+|+-..-+.-+. ..++... .-|.-=-+++|-..+..+|.
T Consensus 224 fl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~-----------------~~elDtS-nGvl~PFyD~dt~ivYl~GKG 284 (472)
T KOG0303|consen 224 FLASGK-IFTTGFSRMSERQIALWDPNNLEEPIA-----------------LQELDTS-NGVLLPFYDPDTSIVYLCGKG 284 (472)
T ss_pred EeccCc-eeeeccccccccceeccCcccccCcce-----------------eEEeccC-CceEEeeecCCCCEEEEEecC
Confidence 333355 444433 23444555322222100 0122222 33444456888887776664
Q ss_pred CceE-EEEccCCc
Q 001567 473 HGLI-LYDIRQKK 484 (1052)
Q Consensus 473 dG~i-lwd~~s~~ 484 (1052)
||.| .|.+....
T Consensus 285 D~~IRYyEit~d~ 297 (472)
T KOG0303|consen 285 DSSIRYFEITNEP 297 (472)
T ss_pred CcceEEEEecCCC
Confidence 8888 88887654
No 178
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=1.2e-10 Score=137.61 Aligned_cols=292 Identities=16% Similarity=0.196 Sum_probs=170.3
Q ss_pred cceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEe----ecCCeE
Q 001567 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV----SDNKHM 145 (1052)
Q Consensus 70 ~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~----~d~~~l 145 (1052)
-..+.|+|=...|+++.....+++||-+.+.....+........ .|+.+. .|...+
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t--------------------~Vs~l~liNe~D~aLl 1126 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDT--------------------RVSDLELINEQDDALL 1126 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCC--------------------ccceeeeecccchhhe
Confidence 34688999888999988778899999886553222222211111 222222 134568
Q ss_pred EEEecCCcEEEEeccCcccc--ceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceE
Q 001567 146 LLGLSDGSLYSISWKGEFYG--AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1052)
Q Consensus 146 lv~t~dg~v~~~~wd~~~~~--~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (1052)
++++.||.|++ |+.-... ...+. ..| .+...+....++ .+.++ +|.
T Consensus 1127 Ltas~dGvIRI--wk~y~~~~~~~eLV--------Taw--~~Ls~~~~~~r~------------~~~v~--dWq------ 1174 (1387)
T KOG1517|consen 1127 LTASSDGVIRI--WKDYADKWKKPELV--------TAW--SSLSDQLPGARG------------TGLVV--DWQ------ 1174 (1387)
T ss_pred eeeccCceEEE--ecccccccCCceeE--------Eee--ccccccCccCCC------------CCeee--ehh------
Confidence 88999999988 5543322 11110 000 011111111110 11121 221
Q ss_pred EEEeeCCcEEEEEecCCceeeeeeccccee----cCCCCeE-EEEEc-CCCCEEEEEeeCCeEEEEecCCCCc--eeEEE
Q 001567 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIA-PEQQILAVGTRRGVVELYDLAESAS--LIRTV 295 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~----~gh~~~v-~va~s-pd~~~lAsgs~Dg~V~vwd~~~~~~--~~~~l 295 (1052)
--.|. ++++++-..|++||..+-.+. .+.+..+ .++-+ +.|..||.|..||.||+||.+.... .+...
T Consensus 1175 ---Q~~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1175 ---QQSGH-LLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred ---hhCCe-EEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee
Confidence 12344 444455678999998876543 2222222 33222 3479999999999999999876332 45555
Q ss_pred EeecCCCCCCCCCC--eeEEEECCCCCE-EEEEEcCCcEEEEEcCCCeEEE--Eeccccc--CceeeeeEcCCCCCCccc
Q 001567 296 SLYDWGYSMDDTGP--VSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMS--TIRQISL--SSISSPIVKPNQDCKYEP 368 (1052)
Q Consensus 296 ~~~~~~~~~~h~g~--V~~l~~SpDg~~-Lasg~~Dg~v~vWd~~~~~l~~--tl~~~~~--~~v~s~~~sp~~~~~~~~ 368 (1052)
+. |+.. |..+.+-+.|-. |++|+.||.|++||+....... ++..|.. +..+++..++.. ..
T Consensus 1251 R~--------h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~ha----pi 1318 (1387)
T KOG1517|consen 1251 RE--------HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHA----PI 1318 (1387)
T ss_pred cc--------cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCC----Ce
Confidence 55 7776 999999998865 9999999999999998742211 1111110 125555555555 55
Q ss_pred eeeee--eeeEEecCCceEEEEecCCcccEEEEeccceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCc
Q 001567 369 LMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 446 (1052)
Q Consensus 369 l~sg~--~~~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~ 446 (1052)
+++|+ .+++|+..|.++-... . . |
T Consensus 1319 iAsGs~q~ikIy~~~G~~l~~~k-~--------------------------------------n--------------~- 1344 (1387)
T KOG1517|consen 1319 IASGSAQLIKIYSLSGEQLNIIK-Y--------------------------------------N--------------P- 1344 (1387)
T ss_pred eeecCcceEEEEecChhhhcccc-c--------------------------------------C--------------c-
Confidence 55555 5555555443321110 0 0 1
Q ss_pred ccc-cCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 001567 447 SYI-SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1052)
Q Consensus 447 ~~~-~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~ 483 (1052)
.+. ...+.+.|++|+|..-++|+|..|.++ +|....+
T Consensus 1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 111 123456899999999999999999999 9987654
No 179
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.2e-10 Score=137.29 Aligned_cols=234 Identities=12% Similarity=0.074 Sum_probs=145.3
Q ss_pred CcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCC---cEEEEEEEEecCceeecCCCCCCCceee
Q 001567 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (1052)
Q Consensus 40 ~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d---g~l~i~~l~~~~~~~~~~~~~~~~~~~~ 116 (1052)
..|.|||.++.. + .... .+.+.+...+|||||+.||.++.+ ..|.+||+..+.......
T Consensus 184 ~~i~i~d~dg~~-~-~~lt------~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~---------- 245 (429)
T PRK01742 184 YEVRVADYDGFN-Q-FIVN------RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS---------- 245 (429)
T ss_pred EEEEEECCCCCC-c-eEec------cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec----------
Confidence 579999986322 1 1111 123457789999999999987754 369999987543221110
Q ss_pred eEeeeeccccccccccceEEEEeecCCeEEEEe-cCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecC
Q 001567 117 KISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (1052)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t-~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~ 195 (1052)
+.+... ..++++|++.++++. .+|...++.|+........
T Consensus 246 -----------~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~--------------------------- 286 (429)
T PRK01742 246 -----------FRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ--------------------------- 286 (429)
T ss_pred -----------CCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe---------------------------
Confidence 011111 236788898888865 5787777777643321111
Q ss_pred CCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEe-cCCceeeeeeccc--c-eecCCCCeEEEEEcCCCCEE
Q 001567 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKI--D-KELGSGDAVCASIAPEQQIL 271 (1052)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~-~d~~i~~w~~~~~--~-~~~gh~~~v~va~spd~~~l 271 (1052)
+..+...+. ...++|||+.++..+ .++..++|+.... . ...++.. .+.+|+|||+.|
T Consensus 287 --------lt~~~~~~~----------~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~i 347 (429)
T PRK01742 287 --------LTSGAGNNT----------EPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTL 347 (429)
T ss_pred --------eccCCCCcC----------CEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEE
Confidence 001111121 245689999766655 4567788865421 1 1123332 457899999999
Q ss_pred EEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcC--CCeEEEEecccc
Q 001567 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--GCRLMSTIRQIS 349 (1052)
Q Consensus 272 Asgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~--~~~l~~tl~~~~ 349 (1052)
|+++.++.+ +||+.+ +... .+.. + ....+++|+|||+.|+.++.+++..+|.+. .+....++.+|
T Consensus 348 a~~~~~~i~-~~Dl~~-g~~~-~lt~--------~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~- 414 (429)
T PRK01742 348 VMINGDNVV-KQDLTS-GSTE-VLSS--------T-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS- 414 (429)
T ss_pred EEEcCCCEE-EEECCC-CCeE-EecC--------C-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC-
Confidence 998877654 589876 5432 2222 1 123567899999999999999999888763 45677778766
Q ss_pred cCceeeeeEcCCC
Q 001567 350 LSSISSPIVKPNQ 362 (1052)
Q Consensus 350 ~~~v~s~~~sp~~ 362 (1052)
...+..++|+|..
T Consensus 415 ~g~~~~p~wsp~~ 427 (429)
T PRK01742 415 DGQVKFPAWSPYL 427 (429)
T ss_pred CCCCCCcccCCCC
Confidence 5667888888753
No 180
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.6e-11 Score=133.23 Aligned_cols=192 Identities=16% Similarity=0.121 Sum_probs=131.6
Q ss_pred EEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCC
Q 001567 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1052)
Q Consensus 260 v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~ 339 (1052)
-+++|+++|+.+|+|+.||++|||++.. ...+..... |.+.|.++.|||||+.||+-+.| ..+||++.++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~--------~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIA--------HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHh--------hcCccccceeCCCCcEEEEecCC-ceEEEEeccC
Confidence 4799999999999999999999999765 333333344 89999999999999999999999 9999999998
Q ss_pred eEEEEecc-cccCceeeeeEcCCCCCCccceeee---------eeeeEEecCCc-eEEEEecCCcccE--EEEec-ccee
Q 001567 340 RLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSG---------TSMMQWDEYGY-RLYAIEEGSSERV--LIFSF-GKCC 405 (1052)
Q Consensus 340 ~l~~tl~~-~~~~~v~s~~~sp~~~~~~~~l~sg---------~~~~~W~~~~~-~l~~~~~~~~~~v--~~~s~-~k~~ 405 (1052)
..+.+... ........++|+.+++...-.++.- ..+.+|+.... ++...... ...| +.++. |+.+
T Consensus 218 ~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 218 AALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKFL 296 (398)
T ss_pred chhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCCcEE
Confidence 66666552 2234566778877753211112111 13344554311 11111111 2234 55555 8999
Q ss_pred eeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEcc
Q 001567 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (1052)
Q Consensus 406 ~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~ 481 (1052)
+-|+.||.|-+.+...-.. ++ ..-..|..-|+.+.|+||.+++++-+.+..+ +..+.
T Consensus 297 AlGT~dGsVai~~~~~lq~-----------------~~--~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 297 ALGTMDGSVAIYDAKSLQR-----------------LQ--YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEeccCCcEEEEEeceeee-----------------eE--eehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999999998877543221 11 1223688899999999999999988877766 66653
No 181
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.30 E-value=3.8e-06 Score=106.54 Aligned_cols=439 Identities=14% Similarity=0.156 Sum_probs=209.2
Q ss_pred hcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceE--EEEeecCC
Q 001567 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNK 143 (1052)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~d~~ 143 (1052)
..+.++++.+-+|...|++++++|.|.++..+.+... ..+.. . +..+..| .+.+||.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~----------~~~E~-----V-----G~vd~GI~a~~WSPD~E 133 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE----------DEIEI-----V-----GSVDSGILAASWSPDEE 133 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC----------ceeEE-----E-----EEEcCcEEEEEECCCcC
Confidence 3467899999999999999999999999854421100 00000 0 1111223 35578888
Q ss_pred eEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCe----eeccccCCCccEEEEEecCC
Q 001567 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAF----VSDHKFPISSAIIWLELCLP 219 (1052)
Q Consensus 144 ~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~----~~~~~~~~~~~i~~i~~~~~ 219 (1052)
.+++.|.+|.+..+.-+-+......+..........-.++ |..-+.+.-+..+.. .+.+... ......+. ..+
T Consensus 134 lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVG-WGkKeTQF~Gs~gK~aa~~~~~p~~~-~~d~~~~s-~dd 210 (928)
T PF04762_consen 134 LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVG-WGKKETQFHGSAGKAAARQLRDPTVP-KVDEGKLS-WDD 210 (928)
T ss_pred EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeec-cCcccCccCcchhhhhhhhccCCCCC-ccccCccc-cCC
Confidence 8999999998887754433322222211111000000000 011111100000000 0000000 00001111 112
Q ss_pred cceEEEEeeCCcEEEEEec---C---Cceeeeeeccccee--cCCCCeE--EEEEcCCCCEEEEEee---CCeEEEEecC
Q 001567 220 MRLLFVLYSNGQLMSCSVS---K---KGLKLAEFIKIDKE--LGSGDAV--CASIAPEQQILAVGTR---RGVVELYDLA 286 (1052)
Q Consensus 220 ~~~~~~~s~dG~~~~~~~~---d---~~i~~w~~~~~~~~--~gh~~~v--~va~spd~~~lAsgs~---Dg~V~vwd~~ 286 (1052)
....+.+-.||+++++.+- . ..+++|+-. +... ....+.. +++|-|.|++||+... ...|.+|.-+
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence 2334455688888887764 2 357788654 2111 1112223 7899999999999775 3467777643
Q ss_pred CCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeE--EEEecccccCceeeeeEcCCCCC
Q 001567 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDC 364 (1052)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l--~~tl~~~~~~~v~s~~~sp~~~~ 364 (1052)
|-.-..+.. +. ......|..++|++|+..||+...| .|.+|......- .+.+.-. ...
T Consensus 290 --GLrhgeF~l---~~-~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~-----------~~~-- 349 (928)
T PF04762_consen 290 --GLRHGEFTL---RF-DPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFS-----------SSE-- 349 (928)
T ss_pred --CcEeeeEec---CC-CCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEcc-----------CCC--
Confidence 322222222 11 0145689999999999999998876 499999877542 2222211 110
Q ss_pred CccceeeeeeeeEEecCCceEEEEecCCcccEEEEeccceee-eec----cCCceeeeEeeecCceEEEEecCCcchhee
Q 001567 365 KYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCL-NRG----VSGMTYARQVIYGEDRLLVVQSEDTDELKI 439 (1052)
Q Consensus 365 ~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~-s~s----~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w 439 (1052)
+.....|+++...-+..... .+.+..+.+.-... +.+ ..+.+-+ -.+.+++++. +..
T Consensus 350 -------~~~~~~Wdpe~p~~L~v~t~-~g~~~~~~~~~~v~~s~~~~~~D~g~vaV----IDG~~lllTp------f~~ 411 (928)
T PF04762_consen 350 -------SVNFVKWDPEKPLRLHVLTS-NGQYEIYDFAWDVSRSPGSSPNDNGTVAV----IDGNKLLLTP------FRR 411 (928)
T ss_pred -------CCCceEECCCCCCEEEEEec-CCcEEEEEEEEEEEecCCCCccCceEEEE----EeCCeEEEec------ccc
Confidence 01225577754433333222 13333333311111 100 1111111 1122222221 011
Q ss_pred eeeccCc--ccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCC-cEE----EecCcc---------cee-eeEEEE
Q 001567 440 LHLNLPV--SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK-KWR----VFGDIT---------QEQ-KIQSKG 501 (1052)
Q Consensus 440 ~~~~~p~--~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~-~w~----~f~~~~---------~e~-~~~v~g 501 (1052)
..+..|- ....-..+|..++|++++..+|+-..||.+ +|....+ .|. .+.... .+. ......
T Consensus 412 a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (928)
T PF04762_consen 412 AVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQ 491 (928)
T ss_pred cCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEE
Confidence 1111121 112334689999999999999999999988 8885432 221 010000 111 122567
Q ss_pred EEEeCCEEEEEEEecCCCeEEEEEeeCCCCC-CcceeEEeecCCccEEEEeeCCE--EEEEEcCCeEE
Q 001567 502 LLWLGKIIVVCNYIDSSNTYELLFYPRYHLD-QSSLLCRKSLLAKPIVMDVYEDY--ILVTYRPFDVH 566 (1052)
Q Consensus 502 l~W~~~~li~~~~~~~~~~~elrly~~~~ld-~~~~l~~~~~~~~~~~~s~~~~~--llv~~~d~~i~ 566 (1052)
++|.++..+++......+...+.++...... ...+......+......+..++. +++-+.+|.+.
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~ 559 (928)
T PF04762_consen 492 LAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVF 559 (928)
T ss_pred EEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEE
Confidence 8897654333322222244567777663111 11222223333333333332222 45555666665
No 182
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.29 E-value=5.5e-10 Score=120.51 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=69.4
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~ 332 (1052)
.+|.+-+ .++|+|++.++++|+-|.++++||+.. +.....+.. |..-|.-++|.|-++++++-+.|...+
T Consensus 120 r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~d--------h~~yvqgvawDpl~qyv~s~s~dr~~~ 190 (434)
T KOG1009|consen 120 RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILDD--------HEHYVQGVAWDPLNQYVASKSSDRHPE 190 (434)
T ss_pred cccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeeccc--------cccccceeecchhhhhhhhhccCcccc
Confidence 5788888 999999999999999999999999998 887777776 999999999999999999999999777
Q ss_pred EEEcCCCe
Q 001567 333 VWSVSGCR 340 (1052)
Q Consensus 333 vWd~~~~~ 340 (1052)
+.+....+
T Consensus 191 ~~~~~~~~ 198 (434)
T KOG1009|consen 191 GFSAKLKQ 198 (434)
T ss_pred eeeeeeee
Confidence 77765443
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.29 E-value=3.8e-09 Score=120.40 Aligned_cols=235 Identities=13% Similarity=0.140 Sum_probs=134.7
Q ss_pred EEEcCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEe-CCcEEEEEEEEecCceeecCCCCCCCc
Q 001567 35 LIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEKSIQIGGKQPSGL 113 (1052)
Q Consensus 35 A~~sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t-~dg~l~i~~l~~~~~~~~~~~~~~~~~ 113 (1052)
|...+++|++|+.. ....+....+ +...|....++++||++.|++++ .++.|.+|+++.... +...
T Consensus 7 ~~~~~~~I~~~~~~-~~g~l~~~~~----~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~------- 73 (330)
T PRK11028 7 ASPESQQIHVWNLN-HEGALTLLQV----VDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFA------- 73 (330)
T ss_pred EcCCCCCEEEEEEC-CCCceeeeeE----EecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEe-------
Confidence 33468899999985 2222222211 22224456899999999998765 478899999862111 1100
Q ss_pred eeeeEeeeeccccccccccceEEEEeecCCeEEEEec-CCcEEEEeccCccccceeecccCCCCccceeecccCCCccee
Q 001567 114 FFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLAS 192 (1052)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~-dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s 192 (1052)
......+ ...-.++.++++.++++.. ++.+..++.+.. +... . .+.
T Consensus 74 ----------~~~~~~~-~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~--g~~~-~-------~~~------------ 120 (330)
T PRK11028 74 ----------AESPLPG-SPTHISTDHQGRFLFSASYNANCVSVSPLDKD--GIPV-A-------PIQ------------ 120 (330)
T ss_pred ----------eeecCCC-CceEEEECCCCCEEEEEEcCCCeEEEEEECCC--CCCC-C-------cee------------
Confidence 0000111 1123356677888887764 667777655421 1100 0 000
Q ss_pred ecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEE-EecCCceeeeeeccccee----------cCCCCeEE
Q 001567 193 VDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSC-SVSKKGLKLAEFIKIDKE----------LGSGDAVC 261 (1052)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~-~~~d~~i~~w~~~~~~~~----------~gh~~~v~ 261 (1052)
...... ....++++|||+.+++ ...++.+.+|+......+ .....+-.
T Consensus 121 -----------~~~~~~----------~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~ 179 (330)
T PRK11028 121 -----------IIEGLE----------GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRH 179 (330)
T ss_pred -----------eccCCC----------cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCce
Confidence 000000 0122557899987754 445688999988652211 11122338
Q ss_pred EEEcCCCCEEEEEee-CCeEEEEecCCC-Cc--eeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEc-CCcEEEEEc
Q 001567 262 ASIAPEQQILAVGTR-RGVVELYDLAES-AS--LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSV 336 (1052)
Q Consensus 262 va~spd~~~lAsgs~-Dg~V~vwd~~~~-~~--~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~-Dg~v~vWd~ 336 (1052)
++|+|++++++++.. +++|.+|+++.. +. .+.++.. .+....+......+.++|||++++++.+ ++.|.+|++
T Consensus 180 ~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 180 MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM--MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec--CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 999999999988876 899999999742 22 2222221 1111012223457999999999999865 689999998
Q ss_pred CC
Q 001567 337 SG 338 (1052)
Q Consensus 337 ~~ 338 (1052)
..
T Consensus 258 ~~ 259 (330)
T PRK11028 258 SE 259 (330)
T ss_pred eC
Confidence 53
No 184
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=2.7e-11 Score=135.37 Aligned_cols=229 Identities=14% Similarity=0.089 Sum_probs=149.5
Q ss_pred EEEeeCCcEEEEEecCCceeeeeecccc-----------eecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCC--
Q 001567 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-----------KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA-- 289 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~-----------~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~-- 289 (1052)
..+.+--..+++++.|+++++|+..... .+.+|.++| |+++.+++..+.+|+-||+|+.|++....
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence 3445566788999999999999883211 126899999 99999999999999999999999764211
Q ss_pred -------ceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEeccccc-CceeeeeEcCC
Q 001567 290 -------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL-SSISSPIVKPN 361 (1052)
Q Consensus 290 -------~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~-~~v~s~~~sp~ 361 (1052)
....++.+ |++.|+.+++|+....|++++.||+++.|...+... |++...-. .--.++.+-..
T Consensus 380 ~ds~dp~vl~~~l~G--------htdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 380 DDSYDPSVLSGTLLG--------HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred ccccCcchhccceec--------cccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccc
Confidence 12334455 999999999999999999999999999999977665 55443100 00111111100
Q ss_pred CCCCccceeeeeeeeEE---ecCCceEEEEecC----------CcccEEEEeccceeeeeccCCceeeeEeeecCceEEE
Q 001567 362 QDCKYEPLMSGTSMMQW---DEYGYRLYAIEEG----------SSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLV 428 (1052)
Q Consensus 362 ~~~~~~~l~sg~~~~~W---~~~~~~l~~~~~~----------~~~~v~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~ 428 (1052)
. ....+++. ..... +.+..+-+.+... +.+.|+.-+-+....++..|..+++.+...+.-
T Consensus 451 ~--~a~~~~s~-~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~---- 523 (577)
T KOG0642|consen 451 R--PAHSLASF-RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI---- 523 (577)
T ss_pred h--hHhhhhhc-ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc----
Confidence 0 00011111 11111 1122221222111 011122222255666777788888777665543
Q ss_pred EecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 001567 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1052)
Q Consensus 429 ~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~ 484 (1052)
......|...+.++++.|+|-+|++++.||.+ +|.+..+.
T Consensus 524 ----------------l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 524 ----------------LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ----------------chheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 45566788889999999999999999999999 99886543
No 185
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.26 E-value=1.2e-09 Score=131.56 Aligned_cols=222 Identities=11% Similarity=0.096 Sum_probs=131.9
Q ss_pred CccceEEE-cCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEE
Q 001567 68 GENLQAVW-SPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (1052)
Q Consensus 68 G~~~~v~w-SPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~ll 146 (1052)
+.+..++- +|++..+++|+.||+|++|+...-.. +.. .......+.. .+...........++.++
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~------~~~--s~rS~ltys~------~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG------EGG--SARSELTYSP------EGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhhhc------Ccc--eeeeeEEEec------cCCceEEEEeccCCCeEE
Confidence 33445554 55569999999999999999863221 100 0001111111 111122233445678999
Q ss_pred EEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEE
Q 001567 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (1052)
Q Consensus 147 v~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 226 (1052)
++++||.|+....+-.. ..... ....++......+.+++|....
T Consensus 1115 v~t~DG~v~~~~id~~~-~~~~~---------------------------~~~~ri~n~~~~g~vv~m~a~~-------- 1158 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYN-VSKRV---------------------------ATQVRIPNLKKDGVVVSMHAFT-------- 1158 (1431)
T ss_pred EEcCCCeEEEEEccccc-cccce---------------------------eeeeecccccCCCceEEeeccc--------
Confidence 99999999987766421 11100 0011223334445566664311
Q ss_pred eeCCc-EEEEEecCCceeeeeecccce-e-----cCCCCeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeec
Q 001567 227 YSNGQ-LMSCSVSKKGLKLAEFIKIDK-E-----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (1052)
Q Consensus 227 s~dG~-~~~~~~~d~~i~~w~~~~~~~-~-----~gh~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~ 299 (1052)
..++. .++.+..-+.+..||...... | ..|+-.++++++|-+.++++|+..|.+-+||++- ..++..++-
T Consensus 1159 ~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~-- 1235 (1431)
T KOG1240|consen 1159 AIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEH-- 1235 (1431)
T ss_pred ccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccC--
Confidence 12233 445455556667787764322 1 3444444999999999999999999999999986 555555543
Q ss_pred CCCCCCCCCCeeEEEECC---CCCEEEEEE--cCCcEEEEEcCCCeEEEEecc
Q 001567 300 WGYSMDDTGPVSCIAWTP---DNSAFAVGW--KSRGLTVWSVSGCRLMSTIRQ 347 (1052)
Q Consensus 300 ~~~~~~h~g~V~~l~~Sp---Dg~~Lasg~--~Dg~v~vWd~~~~~l~~tl~~ 347 (1052)
.+..++..|...| .....++++ ..+.|.+|++.+|....++..
T Consensus 1236 -----P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1236 -----PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred -----cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEc
Confidence 2456777666655 335555544 468999999999876666543
No 186
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.26 E-value=3.1e-10 Score=117.08 Aligned_cols=246 Identities=14% Similarity=0.131 Sum_probs=151.4
Q ss_pred eCCeEEEEEcC--------CcEEEeecCCceeEEEEEecChhh---h--hhcCccceEEEcCCccEEEEEeCCcEEEEEE
Q 001567 29 VNNGLLLIASP--------CHIELWSSSQHKVRLGKYKRDSES---V--QREGENLQAVWSPDTKLIAVVTSSLYLHIFK 95 (1052)
Q Consensus 29 pdg~llA~~sd--------~~v~IW~~~~~~~~l~~~~r~~~s---l--~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~ 95 (1052)
.|.+.||++.. ....||...++..+-. ..+.+. | ++.|.+.+|.|-|++..||.-+ +..|.+|+
T Consensus 74 ~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~ 150 (370)
T KOG1007|consen 74 FDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWS 150 (370)
T ss_pred CCCceEEEEEeccCCCcceeeEEEEecccccCccc--cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEE
Confidence 34567888732 2588999864433311 111121 2 3468889999999999999876 77899999
Q ss_pred EEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEee-cCCeEEEEecCCcEEEEeccCcccc-ceeecccC
Q 001567 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHMLLGLSDGSLYSISWKGEFYG-AFELVHSS 173 (1052)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-d~~~llv~t~dg~v~~~~wd~~~~~-~~~l~~~~ 173 (1052)
++.+......-... .+...... ...+ ..++ .....+.++.++++.. ||-.+-. ...|
T Consensus 151 l~ess~~vaev~ss--------~s~e~~~~-ftsg------~WspHHdgnqv~tt~d~tl~~--~D~RT~~~~~sI---- 209 (370)
T KOG1007|consen 151 LDESSKIVAEVLSS--------ESAEMRHS-FTSG------AWSPHHDGNQVATTSDSTLQF--WDLRTMKKNNSI---- 209 (370)
T ss_pred cccCcchheeeccc--------ccccccce-eccc------ccCCCCccceEEEeCCCcEEE--EEccchhhhcch----
Confidence 98665421110000 00000000 0111 1222 2234666778888876 5533211 1110
Q ss_pred CCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCc-EEEEEecCCceeeeeecccce
Q 001567 174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDK 252 (1052)
Q Consensus 174 ~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~-~~~~~~~d~~i~~w~~~~~~~ 252 (1052)
-..|+..|++++|+ |+-+ +++++++|+.+++||....+.
T Consensus 210 ------------------------------~dAHgq~vrdlDfN----------pnkq~~lvt~gDdgyvriWD~R~tk~ 249 (370)
T KOG1007|consen 210 ------------------------------EDAHGQRVRDLDFN----------PNKQHILVTCGDDGYVRIWDTRKTKF 249 (370)
T ss_pred ------------------------------hhhhcceeeeccCC----------CCceEEEEEcCCCccEEEEeccCCCc
Confidence 12456678888874 4444 567788899999999886532
Q ss_pred ----ecCCCCeE-EEEEcCC-CCEEEEEeeCCeEEEEecCCCCceeE-----------------E---EEeecCCCCCCC
Q 001567 253 ----ELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIR-----------------T---VSLYDWGYSMDD 306 (1052)
Q Consensus 253 ----~~gh~~~v-~va~spd-~~~lAsgs~Dg~V~vwd~~~~~~~~~-----------------~---l~~~~~~~~~~h 306 (1052)
+.+|...| +|.|||. .++|.+|+.|..|.+|....-....+ + +.......-..|
T Consensus 250 pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh 329 (370)
T KOG1007|consen 250 PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH 329 (370)
T ss_pred cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc
Confidence 37999999 9999996 56788999999999998643110000 0 000000001259
Q ss_pred CCCeeEEEECC-CCCEEEEEEcCCcEEEEEcCC
Q 001567 307 TGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSG 338 (1052)
Q Consensus 307 ~g~V~~l~~Sp-Dg~~Lasg~~Dg~v~vWd~~~ 338 (1052)
...|.+++||. |-=.+|+-+.||.+.|=++..
T Consensus 330 EDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 330 EDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 99999999997 666889999999988876643
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=1.8e-10 Score=121.71 Aligned_cols=227 Identities=16% Similarity=0.168 Sum_probs=140.7
Q ss_pred CCcEEEEEecCCceeeeeeccccee-----cCCC-CeE-EEEEcCCCCEEEEEee----CCeEEEEecCCCCceeEEEEe
Q 001567 229 NGQLMSCSVSKKGLKLAEFIKIDKE-----LGSG-DAV-CASIAPEQQILAVGTR----RGVVELYDLAESASLIRTVSL 297 (1052)
Q Consensus 229 dG~~~~~~~~d~~i~~w~~~~~~~~-----~gh~-~~v-~va~spd~~~lAsgs~----Dg~V~vwd~~~~~~~~~~l~~ 297 (1052)
.+..+.+++.||++++||....... .++. .+. |++.+-+++++|+|+. |-.|.+||++...++++.+..
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e 162 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE 162 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh
Confidence 3556888899999999999865432 4555 334 9999989999999964 678999999984554555543
Q ss_pred ecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEcCCCe----EEEEecccccCceeeeeEcCCCCCCccceeee
Q 001567 298 YDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCR----LMSTIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (1052)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~Sp-Dg~~Lasg~~Dg~v~vWd~~~~~----l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg 372 (1052)
.|...|++++|.| |.+.|+||+-||-|.|+|+..-. +..++. + .++|..+.|..++ +..+..-
T Consensus 163 -------SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~-~sSI~~igw~~~~---ykrI~cl 230 (376)
T KOG1188|consen 163 -------SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-H-GSSIHLIGWLSKK---YKRIMCL 230 (376)
T ss_pred -------hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-c-cceeeeeeeecCC---cceEEEE
Confidence 3999999999999 56899999999999999997642 233332 2 3457777776654 1222221
Q ss_pred e---eeeEEecCCceEEEEecCCc------------ccE-EEEec--cceeeeecc-CCceeeeEeeecCceEEEEecCC
Q 001567 373 T---SMMQWDEYGYRLYAIEEGSS------------ERV-LIFSF--GKCCLNRGV-SGMTYARQVIYGEDRLLVVQSED 433 (1052)
Q Consensus 373 ~---~~~~W~~~~~~l~~~~~~~~------------~~v-~~~s~--~k~~~s~s~-d~~v~~w~~~~~~~~l~~~~~~~ 433 (1052)
+ +..+|..+.+.......... +.+ -...+ ....+.++. .+...+.-+.....
T Consensus 231 TH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s--------- 301 (376)
T KOG1188|consen 231 THMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSS--------- 301 (376)
T ss_pred EccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccc---------
Confidence 2 56677776554322221110 001 11111 111111111 22222222111000
Q ss_pred cchheeeeeccCccccc-CCCcEEEEEEccCCCEEEEEeCCceE-EEEcc
Q 001567 434 TDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (1052)
Q Consensus 434 ~~~~~w~~~~~p~~~~~-h~~~V~~va~SpdG~~lavag~dG~i-lwd~~ 481 (1052)
-...+-|..+.+ |..-||++.|...+..+.+||+||.+ +|...
T Consensus 302 -----~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 302 -----GSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred -----ccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 011122444554 66678999999899999999999999 99863
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=5e-10 Score=132.62 Aligned_cols=290 Identities=17% Similarity=0.193 Sum_probs=177.3
Q ss_pred CceEEEEeeCCeEEEEEc-CCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcC--CccEEEEEeCCcEEEEEEEE
Q 001567 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP--DTKLIAVVTSSLYLHIFKVQ 97 (1052)
Q Consensus 21 ~~~vv~fSpdg~llA~~s-d~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSP--Dg~~Lav~t~dg~l~i~~l~ 97 (1052)
.-.++.|+|=...++++. ...|+|||.. .+..+..+.-... -...+..+++-- |..++.+++.||.|+||+--
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e-~~~~l~~F~n~~~---~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWE-KGRLLNGFDNGAF---PDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecc-cCceeccccCCCC---CCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 456788888888888887 4589999996 4444444432211 122345566543 56789999999999999853
Q ss_pred ecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCc
Q 001567 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (1052)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~ 177 (1052)
...- ..++ +-+.-..++.........+.+.........++++++-..|++ ||.+.+...
T Consensus 1142 ~~~~------~~~e---LVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRI--WDa~~E~~~---------- 1200 (1387)
T KOG1517|consen 1142 ADKW------KKPE---LVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRI--WDAHKEQVV---------- 1200 (1387)
T ss_pred cccc------CCce---eEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEE--EecccceeE----------
Confidence 2210 0000 111111122222222233345555555666777666555655 665543222
Q ss_pred cceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeecccce-----
Q 001567 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK----- 252 (1052)
Q Consensus 178 ~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~----- 252 (1052)
..+|. +....++.+.- -...|.+++.|..||.++++|......
T Consensus 1201 --~diP~---------------------~s~t~vTaLS~---------~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1201 --ADIPY---------------------GSSTLVTALSA---------DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred --eeccc---------------------CCCccceeecc---------cccCCceEEEeecCCceEEeecccCCccccce
Confidence 12222 12233444331 123488899999999999998775432
Q ss_pred -ecCCCCe--E-EEEEcCCCCE-EEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCC--C-CeeEEEECCCCCEEEE
Q 001567 253 -ELGSGDA--V-CASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT--G-PVSCIAWTPDNSAFAV 324 (1052)
Q Consensus 253 -~~gh~~~--v-~va~spd~~~-lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~--g-~V~~l~~SpDg~~Las 324 (1052)
+..|++. | .+.+.++|-- |++|+.||.|++||++.. .....+.... |. | .++++..+++...+|+
T Consensus 1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~~~~iv~------~~~yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKETFLTIVA------HWEYGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-cccccceeee------ccccCccceeeeeccCCCeeee
Confidence 2567776 7 9999997655 999999999999999872 2222222100 32 4 5999999999999999
Q ss_pred EEcCCcEEEEEcCCCeEEEEec------ccccCceeeeeEcCCCCCCccceeeee---eeeEEec
Q 001567 325 GWKSRGLTVWSVSGCRLMSTIR------QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 380 (1052)
Q Consensus 325 g~~Dg~v~vWd~~~~~l~~tl~------~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~ 380 (1052)
|+. +.|+||++.|..+. .++ +.....+++++|+|.. -.++.|. ++.++..
T Consensus 1322 Gs~-q~ikIy~~~G~~l~-~~k~n~~F~~q~~gs~scL~FHP~~----~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1322 GSA-QLIKIYSLSGEQLN-IIKYNPGFMGQRIGSVSCLAFHPHR----LLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred cCc-ceEEEEecChhhhc-ccccCcccccCcCCCcceeeecchh----HhhhhccCCceEEEeec
Confidence 999 99999999886532 222 1123457888888875 4555544 4445544
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.25 E-value=5.8e-09 Score=118.88 Aligned_cols=268 Identities=15% Similarity=0.182 Sum_probs=155.8
Q ss_pred EEEEecCCceeeeeecccce---e--cCC-CCeEEEEEcCCCCEEEEEe-eCCeEEEEecCCCCceeEEEEeecCCCCCC
Q 001567 233 MSCSVSKKGLKLAEFIKIDK---E--LGS-GDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (1052)
Q Consensus 233 ~~~~~~d~~i~~w~~~~~~~---~--~gh-~~~v~va~spd~~~lAsgs-~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~ 305 (1052)
+++...++++.+|+...... . ..+ ..+..++++|++++|++++ .++.|.+|+++..+.. .......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~~------ 77 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAESP------ 77 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeeec------
Confidence 44445677777777742111 1 122 2334899999999887664 5789999999742332 2222111
Q ss_pred CCCCeeEEEECCCCCEEEEEEc-CCcEEEEEcCC-Ce---EEEEecccccCceeeeeEcCCCCCCcccee-eee---eee
Q 001567 306 DTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSG-CR---LMSTIRQISLSSISSPIVKPNQDCKYEPLM-SGT---SMM 376 (1052)
Q Consensus 306 h~g~V~~l~~SpDg~~Lasg~~-Dg~v~vWd~~~-~~---l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~-sg~---~~~ 376 (1052)
..+....++|+|||+++++++. ++.+.+|++.. +. ....+.+ ......++++|++ +.+. +.. ++.
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g----~~l~v~~~~~~~v~ 151 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDN----RTLWVPCLKEDRIR 151 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCC----CEEEEeeCCCCEEE
Confidence 2345678999999998888764 78999999963 22 2233322 2335667889987 5553 222 788
Q ss_pred EEecCC-ceEE-------EEecCCcccEEEEec-cceeeeecc-CCceeeeEeeecCceEEEEecCCcchheeeeeccCc
Q 001567 377 QWDEYG-YRLY-------AIEEGSSERVLIFSF-GKCCLNRGV-SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 446 (1052)
Q Consensus 377 ~W~~~~-~~l~-------~~~~~~~~~v~~~s~-~k~~~s~s~-d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~ 446 (1052)
+|+.++ +.+. ....+...+=..|++ ++.+...+. ++++.+|++......+..... ....|.
T Consensus 152 v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~---------~~~~p~ 222 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT---------LDMMPA 222 (330)
T ss_pred EEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE---------EecCCC
Confidence 999865 3321 111222222356677 777766665 889999998643222111110 001233
Q ss_pred ccccCCCcEEEEEEccCCCEEEEEeC-CceE-EEEccC--CcEEEecCccceeeeEEEEEEE--eCCEEEEEEEecCCCe
Q 001567 447 SYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQ--KKWRVFGDITQEQKIQSKGLLW--LGKIIVVCNYIDSSNT 520 (1052)
Q Consensus 447 ~~~~h~~~V~~va~SpdG~~lavag~-dG~i-lwd~~s--~~w~~f~~~~~e~~~~v~gl~W--~~~~li~~~~~~~~~~ 520 (1052)
.+.+..++ ..+.++|||++++++.+ ++.+ +|++.. +.++..+...-.. ...++.+ .+.++++++. .+
T Consensus 223 ~~~~~~~~-~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~--~p~~~~~~~dg~~l~va~~----~~ 295 (330)
T PRK11028 223 DFSDTRWA-ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTET--QPRGFNIDHSGKYLIAAGQ----KS 295 (330)
T ss_pred cCCCCccc-eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccc--cCCceEECCCCCEEEEEEc----cC
Confidence 22222233 46889999999999865 6778 999854 3444333211110 1123444 4778888743 23
Q ss_pred EEEEEeeCC
Q 001567 521 YELLFYPRY 529 (1052)
Q Consensus 521 ~elrly~~~ 529 (1052)
..|.+|..+
T Consensus 296 ~~v~v~~~~ 304 (330)
T PRK11028 296 HHISVYEID 304 (330)
T ss_pred CcEEEEEEc
Confidence 568888764
No 190
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.25 E-value=6.3e-11 Score=131.35 Aligned_cols=96 Identities=21% Similarity=0.408 Sum_probs=85.4
Q ss_pred CCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 001567 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1052)
Q Consensus 257 ~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd 335 (1052)
.+++ ..+|+|||++||+-++||.+||||.++ .+++..++. .=|...||+|||||++|++|++|.-|.||+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkS--------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKS--------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHh--------hccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 3467 889999999999999999999999987 555554444 458899999999999999999999999999
Q ss_pred cCCCeEEEEecccccCceeeeeEcCCC
Q 001567 336 VSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1052)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (1052)
+..+++++.-++| .+.|+.++|.|..
T Consensus 361 f~erRVVARGqGH-kSWVs~VaFDpyt 386 (636)
T KOG2394|consen 361 FEERRVVARGQGH-KSWVSVVAFDPYT 386 (636)
T ss_pred eccceEEEecccc-ccceeeEeecccc
Confidence 9999999998888 8999999999864
No 191
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.25 E-value=6.7e-10 Score=116.42 Aligned_cols=359 Identities=17% Similarity=0.198 Sum_probs=193.7
Q ss_pred ceEEEEeeCCeEEEEEcCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEE-EEeCCcEEEEEEEEecC
Q 001567 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIA-VVTSSLYLHIFKVQITE 100 (1052)
Q Consensus 22 ~~vv~fSpdg~llA~~sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~La-v~t~dg~l~i~~l~~~~ 100 (1052)
.+...|||+|+++|++++..+.|=|.+ + .++...-- . -..+.-+.|+-|+-.+. +...++.|.+|++...+
T Consensus 11 ~~~c~fSp~g~yiAs~~~yrlviRd~~-t-lq~~qlf~---c---ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe 82 (447)
T KOG4497|consen 11 NPFCSFSPCGNYIASLSRYRLVIRDSE-T-LQLHQLFL---C---LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE 82 (447)
T ss_pred CCceeECCCCCeeeeeeeeEEEEeccc-h-hhHHHHHH---H---HHHhhheeeeccceeeeeeeeccceEEEEEeecce
Confidence 456789999999999998888888775 2 11111110 1 13456899999998654 56677899999997322
Q ss_pred ceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEec-CCcEEEEeccCccccceeecccCCCCccc
Q 001567 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1052)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~-dg~v~~~~wd~~~~~~~~l~~~~~~~~~i 179 (1052)
|.- ++.+ +....+..+.+|||..++..++ +-.+.+|+..... ..-
T Consensus 83 ---------------w~c--kIde----g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~~~----------- 128 (447)
T KOG4497|consen 83 ---------------WYC--KIDE----GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--GYL----------- 128 (447)
T ss_pred ---------------eEE--Eecc----CCCcceeeeECCCcceEeeeecceeEEEEEEeccce--eEE-----------
Confidence 100 0000 1111223466788877777665 4455554433221 110
Q ss_pred eeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee------
Q 001567 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------ 253 (1052)
Q Consensus 180 ~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~------ 253 (1052)
....+..+.. .+|.+||++.+..+........+....+.|
T Consensus 129 ------------------------~~~pK~~~kg----------~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f 174 (447)
T KOG4497|consen 129 ------------------------LPHPKTNVKG----------YAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEF 174 (447)
T ss_pred ------------------------ecccccCcee----------EEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhc
Confidence 0111122222 456889998877665322111111111111
Q ss_pred -cCCCCeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 001567 254 -LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1052)
Q Consensus 254 -~gh~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~ 332 (1052)
.+..+.+.+.|+|||..||+ ||--- + ..+-..+ -.-++..++|||.|++||+|+.|+.++
T Consensus 175 ~~dT~DltgieWsPdg~~laV---------wd~~L--e--ykv~aYe------~~lG~k~v~wsP~~qflavGsyD~~lr 235 (447)
T KOG4497|consen 175 KLDTIDLTGIEWSPDGNWLAV---------WDNVL--E--YKVYAYE------RGLGLKFVEWSPCNQFLAVGSYDQMLR 235 (447)
T ss_pred CCCcccccCceECCCCcEEEE---------ecchh--h--heeeeee------eccceeEEEeccccceEEeeccchhhh
Confidence 23345558899999988775 44211 0 0000110 124689999999999999999999998
Q ss_pred EEEcCCCeEEEEecccccCcee--------------------eeeEcCCCCCCccceeeeeeeeEEecC--CceE-----
Q 001567 333 VWSVSGCRLMSTIRQISLSSIS--------------------SPIVKPNQDCKYEPLMSGTSMMQWDEY--GYRL----- 385 (1052)
Q Consensus 333 vWd~~~~~l~~tl~~~~~~~v~--------------------s~~~sp~~~~~~~~l~sg~~~~~W~~~--~~~l----- 385 (1052)
|-+-.+=+.+..+- | ...+. ++.|-|.. .....|... -|+.
T Consensus 236 vlnh~tWk~f~efl-h-l~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~----------~~a~~~~~se~~YE~~~~pv 303 (447)
T KOG4497|consen 236 VLNHFTWKPFGEFL-H-LCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD----------LEAHIWEESETIYEQQMTPV 303 (447)
T ss_pred hhceeeeeehhhhc-c-chhccCchhhhhhhhhcchhhhcccccccCCCc----------cccCccccchhhhhhhhcce
Confidence 86543322221111 1 11111 11222221 011122211 0111
Q ss_pred -EEEecC------Cc--ccEEEEec-cceeeeeccCC--ceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCC
Q 001567 386 -YAIEEG------SS--ERVLIFSF-GKCCLNRGVSG--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (1052)
Q Consensus 386 -~~~~~~------~~--~~v~~~s~-~k~~~s~s~d~--~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~ 453 (1052)
+...+. .. ...++|+. ..+++|.+... .+.+||+..-+ ....+....
T Consensus 304 ~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~---------------------l~avLiQk~ 362 (447)
T KOG4497|consen 304 KVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK---------------------LHAVLIQKH 362 (447)
T ss_pred eeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh---------------------hhhhhhhcc
Confidence 111110 01 12366666 55666655443 34555543221 223344567
Q ss_pred cEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEe--CCEEEEE
Q 001567 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVC 512 (1052)
Q Consensus 454 ~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~--~~~li~~ 512 (1052)
||+...|+|....|++....... +|....- +..++. ...|.+..++|. ++.++.+
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~--~~V~vP--~~GF~i~~l~W~~~g~~i~l~ 420 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP--RVVGVP--KKGFNIQKLQWLQPGEFIVLC 420 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCc--eEEecC--CCCceeeeEEecCCCcEEEEE
Confidence 99999999999988888766667 8987552 233333 233889999996 6777766
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.25 E-value=5.2e-09 Score=112.03 Aligned_cols=127 Identities=19% Similarity=0.243 Sum_probs=97.3
Q ss_pred eeeeeeccccee------cCCCCeE-EEEEcCCCCEEEEE--eeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeE
Q 001567 242 LKLAEFIKIDKE------LGSGDAV-CASIAPEQQILAVG--TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC 312 (1052)
Q Consensus 242 i~~w~~~~~~~~------~gh~~~v-~va~spd~~~lAsg--s~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~ 312 (1052)
+.++|...-+.+ ..+..++ .+++|+.+.++|.- ...|.|.|||+.+ -+...++.. |.|++.|
T Consensus 108 IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~a--------H~~~lAa 178 (391)
T KOG2110|consen 108 IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINA--------HKGPLAA 178 (391)
T ss_pred EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEe--------cCCceeE
Confidence 666666543332 3455556 67778888899853 2358999999987 777888887 9999999
Q ss_pred EEECCCCCEEEEEEcCCc-EEEEEcCCCeEEEEeccc-ccCceeeeeEcCCCCCCccceeeee---eeeEEecC
Q 001567 313 IAWTPDNSAFAVGWKSRG-LTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (1052)
Q Consensus 313 l~~SpDg~~Lasg~~Dg~-v~vWd~~~~~l~~tl~~~-~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~ 381 (1052)
++|+|||.+||+|++.|+ |||+++..|..+..++-. -...+.+++|+|++ +++...+ ++.++..+
T Consensus 179 lafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds----~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 179 LAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS----QFLAASSNTETVHIFKLE 248 (391)
T ss_pred EEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC----CeEEEecCCCeEEEEEec
Confidence 999999999999999987 599999999999888753 23568899999998 6665443 56666544
No 193
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.25 E-value=1.6e-09 Score=113.89 Aligned_cols=231 Identities=12% Similarity=0.282 Sum_probs=141.9
Q ss_pred EEEeeCCeEEEEEcCCcEEEeecCCceeEEEEEecChhh-hhhcC-ccceEEEcCCccEEEEEeCC-------cEEEEEE
Q 001567 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSES-VQREG-ENLQAVWSPDTKLIAVVTSS-------LYLHIFK 95 (1052)
Q Consensus 25 v~fSpdg~llA~~sd~~v~IW~~~~~~~~l~~~~r~~~s-l~~~G-~~~~v~wSPDg~~Lav~t~d-------g~l~i~~ 95 (1052)
++|+-|-.-||+++++..+|++++ | ++..... ....| .++...|+ +++||..... +.|.|||
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~-P------~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCD-P------FKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred EEEccCCceEEEEecCceEEEecC-c------hhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEe
Confidence 789999999999999999999997 5 2211111 11112 11233344 3566654432 4588888
Q ss_pred EEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCC
Q 001567 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND 175 (1052)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~ 175 (1052)
=. . +-++..+ .+ ...|+++...++.+++...+ .+.+|.+.........++
T Consensus 82 D~-k------------~~~i~el--~f---------~~~I~~V~l~r~riVvvl~~-~I~VytF~~n~k~l~~~e----- 131 (346)
T KOG2111|consen 82 DL-K------------ERCIIEL--SF---------NSEIKAVKLRRDRIVVVLEN-KIYVYTFPDNPKLLHVIE----- 131 (346)
T ss_pred cc-c------------CcEEEEE--Ee---------ccceeeEEEcCCeEEEEecC-eEEEEEcCCChhheeeee-----
Confidence 11 1 1112222 11 12467777788888887754 566666554332221111
Q ss_pred CccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEe-cCCceeeeeeccc----
Q 001567 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKI---- 250 (1052)
Q Consensus 176 ~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~-~d~~i~~w~~~~~---- 250 (1052)
.......+.+ +++..+ ..+++.-+ ..|.+++-+....
T Consensus 132 ----------------------------t~~NPkGlC~--~~~~~~--------k~~LafPg~k~GqvQi~dL~~~~~~~ 173 (346)
T KOG2111|consen 132 ----------------------------TRSNPKGLCS--LCPTSN--------KSLLAFPGFKTGQVQIVDLASTKPNA 173 (346)
T ss_pred ----------------------------cccCCCceEe--ecCCCC--------ceEEEcCCCccceEEEEEhhhcCcCC
Confidence 0000011211 222222 22222211 2345555554432
Q ss_pred -ceecCCCCeE-EEEEcCCCCEEEEEeeCCe-EEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 001567 251 -DKELGSGDAV-CASIAPEQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1052)
Q Consensus 251 -~~~~gh~~~v-~va~spd~~~lAsgs~Dg~-V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~ 327 (1052)
.....|...+ |++.|-+|.++|++|..|| |||||..+ +..+..++.-. ....|.||+||||+.+||++|+
T Consensus 174 p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~------d~A~iy~iaFSp~~s~LavsSd 246 (346)
T KOG2111|consen 174 PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGV------DRADIYCIAFSPNSSWLAVSSD 246 (346)
T ss_pred ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCC------chheEEEEEeCCCccEEEEEcC
Confidence 2237899999 9999999999999999997 59999998 87777765411 3567999999999999999999
Q ss_pred CCcEEEEEcCCC
Q 001567 328 SRGLTVWSVSGC 339 (1052)
Q Consensus 328 Dg~v~vWd~~~~ 339 (1052)
.||+.|+.+...
T Consensus 247 KgTlHiF~l~~~ 258 (346)
T KOG2111|consen 247 KGTLHIFSLRDT 258 (346)
T ss_pred CCeEEEEEeecC
Confidence 999999998764
No 194
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=99.25 E-value=1.5e-10 Score=134.06 Aligned_cols=336 Identities=17% Similarity=0.192 Sum_probs=180.5
Q ss_pred cEEEEEEccCCCEEEEEeCCceEEEEccCCcEEEecCccceeeeEEEEEEEeCC-EEEEEEEecCCCeEEEEEeeCCCCC
Q 001567 454 PVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGK-IIVVCNYIDSSNTYELLFYPRYHLD 532 (1052)
Q Consensus 454 ~V~~va~SpdG~~lavag~dG~ilwd~~s~~w~~f~~~~~e~~~~v~gl~W~~~-~li~~~~~~~~~~~elrly~~~~ld 532 (1052)
+.+.++++|+|++++++|.....+|.....+-+.+| ....++|... ..++- +....|.+|.- ++
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G--------~g~~~vw~~~n~yAv~-----~~~~~I~I~kn--~~ 98 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFG--------SGLSFVWSSRNRYAVL-----ESSSTIKIYKN--FK 98 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEE--------E-SEEEE-TSSEEEEE------TTS-EEEEET--TE
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccC--------ceeEEEEecCccEEEE-----ECCCeEEEEEc--Cc
Confidence 467899999999999977666669986555544443 2446788753 33332 33466888622 11
Q ss_pred CcceeEEeecCCccEEEEeeCCEEEEEEcCCeEEEEEEEEecccCCCCCCceEEEEEEEEeeecccCCCceEEEccCCCc
Q 001567 533 QSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVP 612 (1052)
Q Consensus 533 ~~~~l~~~~~~~~~~~~s~~~~~llv~~~d~~i~l~~~~~~~~~~~~~~~~i~l~~~~~i~~~~~~~hp~~v~~i~~~~~ 612 (1052)
+.. .....++. -.-..+++.++....+..|.+|++.- ++ .+++|.+. .|+.|.|..
T Consensus 99 ~~~-~k~i~~~~--~~~~If~G~LL~~~~~~~i~~yDw~~-~~------------~i~~i~v~-------~vk~V~Ws~- 154 (443)
T PF04053_consen 99 NEV-VKSIKLPF--SVEKIFGGNLLGVKSSDFICFYDWET-GK------------LIRRIDVS-------AVKYVIWSD- 154 (443)
T ss_dssp E-T-T-----SS---EEEEE-SSSEEEEETTEEEEE-TTT---------------EEEEESS--------E-EEEEE-T-
T ss_pred ccc-ceEEcCCc--ccceEEcCcEEEEECCCCEEEEEhhH-cc------------eeeEEecC-------CCcEEEEEC-
Confidence 111 00111221 22234446677766777899999852 11 25566543 145555552
Q ss_pred cccccCCCCCCCccccccCCceeEEEeeCCEEEEEecCCC---ceeeeccceeEEEEcCCCCccccCccceeeEEEECCC
Q 001567 613 RECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDG---RERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYR 689 (1052)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~il~~~g~l~~l~~~~~---~~~~l~~~VE~~w~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1052)
..+-++.......+|++.+-+.+.-..++| .-.++.+-.|+ +.++.|.++ .++|...
T Consensus 155 ----------~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~--IkSg~W~~d--------~fiYtT~ 214 (443)
T PF04053_consen 155 ----------DGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISER--IKSGCWVED--------CFIYTTS 214 (443)
T ss_dssp ----------TSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S----SEEEEETT--------EEEEE-T
T ss_pred ----------CCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecce--eEEEEEEcC--------EEEEEcC
Confidence 111111111222334333332111111222 11333332333 222334332 4888888
Q ss_pred CcEEeccCCCCCCCCcccccccCcccccccceeeeeeecCCcEEEEEeeeeeccc-CcCccceecCCcceecHHHHHHHH
Q 001567 690 GMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSA-CTEFPCFEPTPQAQTILHCLLRHL 768 (1052)
Q Consensus 690 g~~vw~~~~~~~~~~~~~~~~~~~~l~~~~~~yPl~i~~~~~~i~g~~~~~~~~~-~~~~~~~~~~~~~~~~L~~il~~l 768 (1052)
+ ++-| +.+++ ..+.-++|..+|.++++++++.++.++.+..+.+ .++...++++. .
T Consensus 215 ~-~lkY-l~~Ge---------~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~------------a 271 (443)
T PF04053_consen 215 N-HLKY-LVNGE---------TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSELEFKT------------A 271 (443)
T ss_dssp T-EEEE-EETTE---------EEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHHHHHH------------H
T ss_pred C-eEEE-EEcCC---------cceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHHHHHHH------------H
Confidence 8 9988 44442 2223356788999999999999999987632210 12222333322 6
Q ss_pred HHcccHHHHHHHHHHcCCCCCchHHHHHHHHHhhccccccccccccccCCccccchhhhHHHHHHHHHccchhHHHHhhh
Q 001567 769 LQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSV 848 (1052)
Q Consensus 769 l~~~~~~~a~~~a~~~~~l~~f~~~LE~lLh~vle~e~~~~~~~~~~~~i~~~~~~~~ll~~v~~fi~~~~~~l~ivv~c 848 (1052)
|.|++.+++.++.+. ..++ | .||. ++..++++||+.. +|.|+..++
T Consensus 272 v~~~d~~~v~~~i~~---------------~~ll--------~-----~i~~-----~~~~~i~~fL~~~-G~~e~AL~~ 317 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAA---------------SNLL--------P-----NIPK-----DQGQSIARFLEKK-GYPELALQF 317 (443)
T ss_dssp HHTT-HHH-----HH---------------HHTG--------G-----G--H-----HHHHHHHHHHHHT-T-HHHHHHH
T ss_pred HHcCChhhhhhhhhh---------------hhhc--------c-----cCCh-----hHHHHHHHHHHHC-CCHHHHHhh
Confidence 677887776654300 0011 1 3665 7889999999988 999999999
Q ss_pred cccccccchHHhHhccCChHHHHHHHHhcCcHhHHhhhhhhhhhccCcchhHHHHHHHHHHHHhcccHhHHHHHHHHhh
Q 001567 849 ARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLL 927 (1052)
Q Consensus 849 aRKtE~~~W~~lF~~~g~P~~Lf~~cl~~~~l~~aa~yLiv~~~~e~~~~~~~~~~~Ll~~al~~~~w~l~~eL~RFl~ 927 (1052)
++..+.+ ||.+|+.|+|++|..+..-+. +.++|.+|.+.||.+|+.++|.+-..-.+
T Consensus 318 ~~D~~~r---------------FeLAl~lg~L~~A~~~a~~~~-------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 318 VTDPDHR---------------FELALQLGNLDIALEIAKELD-------DPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp SS-HHHH---------------HHHHHHCT-HHHHHHHCCCCS-------THHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred cCChHHH---------------hHHHHhcCCHHHHHHHHHhcC-------cHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 9999999 999999999999999887543 56799999999999999999988764433
No 195
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=2.7e-10 Score=120.41 Aligned_cols=186 Identities=15% Similarity=0.215 Sum_probs=136.4
Q ss_pred CEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC--CCCEEEEEEcCCcEEEEEcCCCeEEEEec
Q 001567 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1052)
Q Consensus 269 ~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp--Dg~~Lasg~~Dg~v~vWd~~~~~l~~tl~ 346 (1052)
..+|++..+|+|++||..+ ++.+..+++ |.+.++.++|.. .+..+.+|+.||+|++||+........+.
T Consensus 41 ~~vav~lSngsv~lyd~~t-g~~l~~fk~--------~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT-GQLLEEFKG--------PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccc-hhhhheecC--------CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee
Confidence 6799999999999999988 888888988 888899999987 46789999999999999997765443332
Q ss_pred --ccccCceeeeeEcCCCCCCccceeeee-------eeeEEecCCceE-EEE-ecCCcccEEEEec----cceeeeeccC
Q 001567 347 --QISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYRL-YAI-EEGSSERVLIFSF----GKCCLNRGVS 411 (1052)
Q Consensus 347 --~~~~~~v~s~~~sp~~~~~~~~l~sg~-------~~~~W~~~~~~l-~~~-~~~~~~~v~~~s~----~k~~~s~s~d 411 (1052)
++...+..+++. .|+...++.|. .+.+||+...+. +.. ...|.+.|.++.| ...++|||.|
T Consensus 112 ~~~~~~~~f~~ld~----nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 112 WTQQSGTPFICLDL----NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred ccCCCCCcceEeec----cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence 332223444433 24447777665 788999976544 333 4568888855544 6689999999
Q ss_pred CceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCC-CEEEEEeCCceE-EEEccCCc
Q 001567 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKK 484 (1052)
Q Consensus 412 ~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG-~~lavag~dG~i-lwd~~s~~ 484 (1052)
|-+.++|+...++. + -......|...|-.+.|..+| +.+.+-+..++. +|+++.+.
T Consensus 188 GLvnlfD~~~d~Ee----------D-------aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEE----------D-------ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred ceEEeeecCCCcch----------h-------hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 99999998765331 0 012334566779999998887 346666777766 99998876
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.20 E-value=8.7e-10 Score=129.71 Aligned_cols=263 Identities=14% Similarity=0.158 Sum_probs=162.6
Q ss_pred CCCCceEEEEeeCCe-EEEEEc-CCcEEEeecCCceeEE-EEEecChhhhhhcCccceEEEcCCccE--EEEEeCCcEEE
Q 001567 18 CPSSQQIIYFKVNNG-LLLIAS-PCHIELWSSSQHKVRL-GKYKRDSESVQREGENLQAVWSPDTKL--IAVVTSSLYLH 92 (1052)
Q Consensus 18 ~~~~~~vv~fSpdg~-llA~~s-d~~v~IW~~~~~~~~l-~~~~r~~~sl~~~G~~~~v~wSPDg~~--Lav~t~dg~l~ 92 (1052)
|++...++.|+|... ++|.+. +++|.+||..+++.++ ...... ...+..+++++.|-.+-.. ++++++||.|.
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~--~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL--EVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccc--cccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 445667788987754 566654 7899999997554432 111111 1224577889999775555 99999999999
Q ss_pred EEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEE--e-ecCCeEEEEecCCcEEEEeccCccccceee
Q 001567 93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--V-SDNKHMLLGLSDGSLYSISWKGEFYGAFEL 169 (1052)
Q Consensus 93 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~-~d~~~llv~t~dg~v~~~~wd~~~~~~~~l 169 (1052)
.|+++--..... ++...... ..+. -......++++ . .+...+++||..|.|+...+.+.......
T Consensus 319 ~W~~~~l~~P~e-------~~~~~~~~--~~~~--~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~- 386 (555)
T KOG1587|consen 319 SWDTDMLSLPVE-------GLLLESKK--HKGQ--QSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV- 386 (555)
T ss_pred eeeccccccchh-------hccccccc--cccc--ccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc-
Confidence 998763221100 00000000 0000 00111122232 2 34578999999999998666654422200
Q ss_pred cccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeec-
Q 001567 170 VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI- 248 (1052)
Q Consensus 170 ~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~- 248 (1052)
.+.. -.....+.+.|..+.++|. +.-++..+.|-++++|...
T Consensus 387 -------------~~~~--------------~~~~~~h~g~v~~v~~nPF----------~~k~fls~gDW~vriWs~~~ 429 (555)
T KOG1587|consen 387 -------------SYKG--------------HSTFITHIGPVYAVSRNPF----------YPKNFLSVGDWTVRIWSEDV 429 (555)
T ss_pred -------------cccc--------------cccccccCcceEeeecCCC----------ccceeeeeccceeEeccccC
Confidence 0000 0112345667777776554 4444445558899999765
Q ss_pred cccee---cCCCCeE-EEEEcCCC-CEEEEEeeCCeEEEEecCCC-CceeEEEEeecCCCCCCCCCCeeEEEECCCCCEE
Q 001567 249 KIDKE---LGSGDAV-CASIAPEQ-QILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF 322 (1052)
Q Consensus 249 ~~~~~---~gh~~~v-~va~spd~-~~lAsgs~Dg~V~vwd~~~~-~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~L 322 (1052)
....+ ..+.+.+ +++|||-. ..+|++..||.+.+||+... .+++.+... +....+.+.|+++|+.|
T Consensus 430 ~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--------~~~~l~~~~~s~~g~~l 501 (555)
T KOG1587|consen 430 IASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--------CSPALTRVRWSPNGKLL 501 (555)
T ss_pred CCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--------cccccceeecCCCCcEE
Confidence 22222 4566768 99999964 67889999999999999652 133333333 45566889999999999
Q ss_pred EEEEcCCcEEEEEcCCC
Q 001567 323 AVGWKSRGLTVWSVSGC 339 (1052)
Q Consensus 323 asg~~Dg~v~vWd~~~~ 339 (1052)
|+|...|++.+|++...
T Consensus 502 avGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 502 AVGDANGTTHILKLSES 518 (555)
T ss_pred EEecCCCcEEEEEcCch
Confidence 99999999999999643
No 197
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=1.6e-09 Score=115.52 Aligned_cols=246 Identities=10% Similarity=0.047 Sum_probs=171.2
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCC-----CceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES-----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~-----~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~ 327 (1052)
.+|.+.| .+.||.++++||+|+.|..++||+++.. .+++..... .|...|.|++|.-.++.+.+|..
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~-------~H~SNIF~L~F~~~N~~~~SG~~ 125 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEH-------PHRSNIFSLEFDLENRFLYSGER 125 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccC-------ccccceEEEEEccCCeeEecCCC
Confidence 6899999 9999999999999999999999998641 122322211 27789999999999999999999
Q ss_pred CCcEEEEEcCCCeEEEEeccc-ccCceeeeeEcCCCCCCccceeeee---eeeEEecCCc----eEEEEecCCcccE--E
Q 001567 328 SRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSSERV--L 397 (1052)
Q Consensus 328 Dg~v~vWd~~~~~l~~tl~~~-~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~----~l~~~~~~~~~~v--~ 397 (1052)
+++|..-|+.+.+.+...... ..+.|..+..+|.. ..+++.+ .+.+|+.... .++..... .... .
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D----N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~-~~~F~t~ 200 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD----NTLIVVTRAKLVSFIDNRDRQNPISLVLPANS-GKNFYTA 200 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCC----ceEEEEecCceEEEEeccCCCCCCceeeecCC-Cccceee
Confidence 999999999998877666542 13468888888886 7777655 6788987543 34433221 2223 5
Q ss_pred EEec--cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCce
Q 001567 398 IFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 475 (1052)
Q Consensus 398 ~~s~--~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~ 475 (1052)
.|.+ -..+++.+..+.+.+||.......++-+.+. ..+|+ .+..-..+.|+|+|..+.+--+...
T Consensus 201 ~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~---------~~L~~----~~~~~M~~~~~~~G~Q~msiRR~~~ 267 (609)
T KOG4227|consen 201 EFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMF---------KGLPQ----ENTEWMGSLWSPSGNQFMSIRRGKC 267 (609)
T ss_pred eecCCCceeEEeccccCCCCceeeccccchHHhhhcc---------ccCcc----cchhhhheeeCCCCCeehhhhccCC
Confidence 5566 5577788888889999987665543322211 00111 1222346889999998887655555
Q ss_pred E-EEEccCCcEEEecCc-cceeeeE---EEEEEEeCCEEEEEEEecCCCeEEEEEeeC
Q 001567 476 I-LYDIRQKKWRVFGDI-TQEQKIQ---SKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (1052)
Q Consensus 476 i-lwd~~s~~w~~f~~~-~~e~~~~---v~gl~W~~~~li~~~~~~~~~~~elrly~~ 528 (1052)
. +||+.+.+..+|.-. .+..-+. +..+++.+++-|+. .+.++.|.+|..
T Consensus 268 P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~t----GSD~~~i~~Wkl 321 (609)
T KOG4227|consen 268 PLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVAT----GSDHWGIHIWKL 321 (609)
T ss_pred CEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeec----cCcccceEEEec
Confidence 5 999999998887643 3322222 34788888887654 245678889866
No 198
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.16 E-value=5.7e-10 Score=114.03 Aligned_cols=269 Identities=16% Similarity=0.172 Sum_probs=155.2
Q ss_pred ceEEEEeeCCeEEEEEcCCcEEEeecCCceeEEEEEecChhhhhhcC--ccceEEEcCCccEEEEEeCCcEEEEEEEEec
Q 001567 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREG--ENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1052)
Q Consensus 22 ~~vv~fSpdg~llA~~sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G--~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~ 99 (1052)
...+.|-.++++++-...+.|.+|... .. |..-.++.+| .++.+.--|+ ..+.+...|+.+.+|++..+
T Consensus 17 v~s~~fqa~~rL~sg~~~G~V~~w~lq-t~-------r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s 87 (323)
T KOG0322|consen 17 VTSVLFQANERLMSGLSVGIVKMWVLQ-TE-------RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYS 87 (323)
T ss_pred heehhhccchhhhcccccceEEEEEee-cC-------ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCc
Confidence 444667788887776678899999983 32 2222233222 3455666676 57888899999999999763
Q ss_pred Cc----eee-----------cCCCCCCCce--eeeEeeee--------ccccc-----cccccceEEEEeec---CC--e
Q 001567 100 EK----SIQ-----------IGGKQPSGLF--FIKISLVL--------NEQLP-----FAEKGLSVSNIVSD---NK--H 144 (1052)
Q Consensus 100 ~~----~~~-----------~~~~~~~~~~--~~~~~~~~--------~~~~~-----~~~~~~~v~~i~~d---~~--~ 144 (1052)
.- ... ..+....++. .++-.... .-++. -....+++.|...+ +. .
T Consensus 88 ~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~l 167 (323)
T KOG0322|consen 88 AFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFL 167 (323)
T ss_pred ceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEE
Confidence 31 000 0000110000 00000000 00000 01234566676522 22 2
Q ss_pred EEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEE
Q 001567 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1052)
Q Consensus 145 llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (1052)
+++|-.+|++..|....+. ...+++ - ++ ........+...|.+++|.+..+.-+
T Consensus 168 llaGyEsghvv~wd~S~~~-~~~~~~-------------~-------~~-----kv~~~~ash~qpvlsldyas~~~rGi 221 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGD-KIIQLP-------------Q-------SS-----KVESPNASHKQPVLSLDYASSCDRGI 221 (323)
T ss_pred EEEeccCCeEEEEEccCCc-eeeccc-------------c-------cc-----ccccchhhccCcceeeeechhhcCCc
Confidence 4556678888774433221 111110 0 00 00122345777899999876544333
Q ss_pred EEeeCCcEEEEEecCCceeeeeecccceecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCC
Q 001567 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (1052)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~ 303 (1052)
.-.++-+......++.+-.+- . ..+.... .-.+ .+.+-||++.+|+++.||.||||..++ ...+..++-
T Consensus 222 sgga~dkl~~~Sl~~s~gslq-~-~~e~~lk-npGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLky------ 291 (323)
T KOG0322|consen 222 SGGADDKLVMYSLNHSTGSLQ-I-RKEITLK-NPGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKY------ 291 (323)
T ss_pred CCCccccceeeeeccccCccc-c-cceEEec-CCCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhh------
Confidence 333444443333222111100 0 0000012 2345 789999999999999999999999998 888888887
Q ss_pred CCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcC
Q 001567 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (1052)
Q Consensus 304 ~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~ 337 (1052)
|.+.|++++||||...+|+|++|+.|.+|++.
T Consensus 292 --Hsagvn~vAfspd~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 292 --HSAGVNAVAFSPDCELMAAASKDARISLWKLY 323 (323)
T ss_pred --hhcceeEEEeCCCCchhhhccCCceEEeeecC
Confidence 99999999999999999999999999999863
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=1.4e-09 Score=128.16 Aligned_cols=206 Identities=14% Similarity=0.148 Sum_probs=133.0
Q ss_pred EEEEeeCCcEEEEEecC---Cceeeeeecccce--ecCCCCeE-EEEEcCCCCEEEEEe-eCCeEEEEecCCCCceeEEE
Q 001567 223 LFVLYSNGQLMSCSVSK---KGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAVGT-RRGVVELYDLAESASLIRTV 295 (1052)
Q Consensus 223 ~~~~s~dG~~~~~~~~d---~~i~~w~~~~~~~--~~gh~~~v-~va~spd~~~lAsgs-~Dg~V~vwd~~~~~~~~~~l 295 (1052)
...++|||+.++..+.+ ..+.+|+..+++. +....+.. ..+|+|||+.||+++ .+|.+.||.++..+.....+
T Consensus 208 ~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l 287 (429)
T PRK01742 208 SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQL 287 (429)
T ss_pred cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEee
Confidence 35568999988876643 3588898766542 22122223 789999999998875 68887777554323444555
Q ss_pred EeecCCCCCCCCCCeeEEEECCCCCEEEEEE-cCCcEEEEEcC--CCeEEEEecccccCceeeeeEcCCCCCCccceeee
Q 001567 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVS--GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (1052)
Q Consensus 296 ~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~-~Dg~v~vWd~~--~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg 372 (1052)
.. +.+.+.+.+|+|||+.|+.++ .++...||++. ++. ...+ ++ .. ..+.++|++ +.++..
T Consensus 288 t~--------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-~~~l-~~-~~--~~~~~SpDG----~~ia~~ 350 (429)
T PRK01742 288 TS--------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-ASLV-GG-RG--YSAQISADG----KTLVMI 350 (429)
T ss_pred cc--------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEe-cC-CC--CCccCCCCC----CEEEEE
Confidence 54 667788999999999877655 57888999874 332 2222 22 22 457799998 555433
Q ss_pred e--eeeEEecCCceEEEEecCCcccEEEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccc
Q 001567 373 T--SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (1052)
Q Consensus 373 ~--~~~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~ 449 (1052)
. .+..|+..+++...........-..+++ ++.++.++.++...+|.+...+.+ ....+.
T Consensus 351 ~~~~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~------------------~~~~l~ 412 (429)
T PRK01742 351 NGDNVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR------------------FKARLP 412 (429)
T ss_pred cCCCEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC------------------ceEEcc
Confidence 3 5667898877654333222222245777 888888888888888876532221 133444
Q ss_pred cCCCcEEEEEEccC
Q 001567 450 SQNWPVQHVAASKD 463 (1052)
Q Consensus 450 ~h~~~V~~va~Spd 463 (1052)
+|.+.+...+|||-
T Consensus 413 ~~~g~~~~p~wsp~ 426 (429)
T PRK01742 413 GSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCCcccCCC
Confidence 66677788888874
No 200
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.14 E-value=6.5e-10 Score=123.02 Aligned_cols=168 Identities=17% Similarity=0.186 Sum_probs=113.4
Q ss_pred CCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecc
Q 001567 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1052)
Q Consensus 268 ~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~ 347 (1052)
...++.++.||.+.+-+-. ++..+.+.. |.|.|.|-.|+|||.-|.++++||.|++|+-.|. +-.++.+
T Consensus 75 ~d~~~i~s~DGkf~il~k~--~rVE~sv~A--------H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-LRStl~Q 143 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS--ARVERSISA--------HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-LRSTVVQ 143 (737)
T ss_pred cceEEEEcCCceEEEeccc--chhhhhhhh--------hhhhhhhcccCCCCceeeeecCCceEEEEeccch-HHHHHhh
Confidence 3578888999998887642 555555566 9999999999999999999999999999998764 4556655
Q ss_pred cccCceeeeeEcCCCCCCccceeeeeeeeEEecCCceEEEEecCCcccEEEEec---cceeeeeccCCceeeeEeeecCc
Q 001567 348 ISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGED 424 (1052)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~~~~~~ 424 (1052)
. ..+|.++++.|+.. .-....|..+.+=......-+.....|++-|+++++ ...+++|+.|-.-++||.. |..
T Consensus 144 ~-~~~v~c~~W~p~S~--~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~ 219 (737)
T KOG1524|consen 144 N-EESIRCARWAPNSN--SIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GAN 219 (737)
T ss_pred c-CceeEEEEECCCCC--ceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Ccc
Confidence 5 46799999999861 111122222222222222223334567888877777 6788999999999999942 222
Q ss_pred eEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEe
Q 001567 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG 471 (1052)
Q Consensus 425 ~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag 471 (1052)
..+-..|..||++++|.|| +.+|+++
T Consensus 220 --------------------Lf~S~~~ey~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 220 --------------------LFTSAAEEYAITSVAFNPE-KDYLLWS 245 (737)
T ss_pred --------------------cccCChhccceeeeeeccc-cceeeee
Confidence 1222345566666666666 4444444
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.14 E-value=4.6e-09 Score=112.41 Aligned_cols=230 Identities=15% Similarity=0.229 Sum_probs=148.3
Q ss_pred EEEeeCCeEEEEEcCCcEEEeecCCceeEEEEEecChhhhhhcCc-cceEEEcCCccEEEEEeCCc--EEEEEEEEecCc
Q 001567 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGE-NLQAVWSPDTKLIAVVTSSL--YLHIFKVQITEK 101 (1052)
Q Consensus 25 v~fSpdg~llA~~sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~-~~~v~wSPDg~~Lav~t~dg--~l~i~~l~~~~~ 101 (1052)
..|+-|..+|++++.+.-+++..+ +-.+. .+....|. +....|| ++.+|+.+.+. .+++++...+..
T Consensus 11 ~~~Nqd~~~lsvGs~~Gyk~~~~~-~~~k~-------~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 11 IGFNQDSTLLSVGSKDGYKIFSCS-PFEKC-------FSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred eeeccceeEEEccCCCceeEEecC-chHHh-------hcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCce
Confidence 448888999999999999999986 43321 11112222 3455676 45777776543 477887753321
Q ss_pred eeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCcccee
Q 001567 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL 181 (1052)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~ 181 (1052)
- -.+ . + ..+|.++..+.++|+++..+. +++++.....--.. |..
T Consensus 81 I-------------Ce~--~------f---pt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhT-----------I~t 124 (391)
T KOG2110|consen 81 I-------------CEI--F------F---PTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHT-----------IET 124 (391)
T ss_pred E-------------EEE--e------c---CCceEEEEEccceEEEEEccc-EEEEecccceeehh-----------hhc
Confidence 0 001 0 0 113667788889999998876 77776554331110 000
Q ss_pred ecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEe--cCCceeeeeeccccee---cCC
Q 001567 182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV--SKKGLKLAEFIKIDKE---LGS 256 (1052)
Q Consensus 182 i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~--~d~~i~~w~~~~~~~~---~gh 256 (1052)
+-.+...+..+.. ++++.+++.-+ ..|.+.+||..+.+.. ..|
T Consensus 125 ----------------------~~~n~~gl~AlS~----------n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH 172 (391)
T KOG2110|consen 125 ----------------------TPPNPKGLCALSP----------NNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH 172 (391)
T ss_pred ----------------------cCCCccceEeecc----------CCCCceEEecCCCCCceEEEEEcccceeeeEEEec
Confidence 0011112222211 22223443322 2567888888765443 689
Q ss_pred CCeE-EEEEcCCCCEEEEEeeCCeE-EEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEE
Q 001567 257 GDAV-CASIAPEQQILAVGTRRGVV-ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (1052)
Q Consensus 257 ~~~v-~va~spd~~~lAsgs~Dg~V-~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vW 334 (1052)
.+.+ |++|||+|.+||++|+.||| |||.+.+ ++.+..++.-. -.-.|.+++|+||+++|++.+..++|.|+
T Consensus 173 ~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~------~~~~IySL~Fs~ds~~L~~sS~TeTVHiF 245 (391)
T KOG2110|consen 173 KGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGT------YPVSIYSLSFSPDSQFLAASSNTETVHIF 245 (391)
T ss_pred CCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCc------eeeEEEEEEECCCCCeEEEecCCCeEEEE
Confidence 9999 99999999999999999975 9999988 87777766411 13457899999999999999999999999
Q ss_pred EcCCC
Q 001567 335 SVSGC 339 (1052)
Q Consensus 335 d~~~~ 339 (1052)
.+...
T Consensus 246 KL~~~ 250 (391)
T KOG2110|consen 246 KLEKV 250 (391)
T ss_pred Eeccc
Confidence 88654
No 202
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.14 E-value=3.7e-11 Score=138.76 Aligned_cols=164 Identities=18% Similarity=0.312 Sum_probs=127.3
Q ss_pred ecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 001567 253 ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (1052)
Q Consensus 253 ~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v 331 (1052)
+.||..+| |+.|...|.+|.+|+.|..|+||.+++ +.++....+ |.|.|+.++.+.+..++|+++.|..|
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lAs~rG--------hs~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLASCRG--------HSGDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccc-hhhhccCCC--------CccccchhccchhhhhhhhcccCceE
Confidence 47999999 999999999999999999999999887 888888887 99999999999999999999999999
Q ss_pred EEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeeeeeeEEecCCceEEEEecCCcccEEEEeccceeeeeccC
Q 001567 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVS 411 (1052)
Q Consensus 332 ~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d 411 (1052)
++|-+..+.++..|+|| ++.|++++|+|-. +.+.|
T Consensus 257 rvWrl~~~~pvsvLrgh-tgavtaiafsP~~--------------------------------------------sss~d 291 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGH-TGAVTAIAFSPRA--------------------------------------------SSSDD 291 (1113)
T ss_pred EEEecCCCchHHHHhcc-ccceeeeccCccc--------------------------------------------cCCCC
Confidence 99999999999999999 8899999998864 22344
Q ss_pred CceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEE
Q 001567 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (1052)
Q Consensus 412 ~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~ 486 (1052)
|++++||... +.++++- -|..+.+ ..-+-++.|-.+|..+++|++|+.. .|....-.|+
T Consensus 292 gt~~~wd~r~-~~~~y~p--------------rp~~~~~-~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~ 351 (1113)
T KOG0644|consen 292 GTCRIWDARL-EPRIYVP--------------RPLKFTE-KDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWR 351 (1113)
T ss_pred CceEeccccc-cccccCC--------------CCCCccc-ccceeeeeccccccccccccCCcccccchhhHhhhh
Confidence 5555555331 1110000 0112211 1345567777788888899999888 8877655554
No 203
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.12 E-value=1.4e-09 Score=111.11 Aligned_cols=161 Identities=18% Similarity=0.132 Sum_probs=108.2
Q ss_pred CCeE-EEEEcCC---CCEEEEEeeCCeEEEEecCCCCceeEEEEeecCC---CCCCCCCCeeEEEECCCCCEEEEEEcCC
Q 001567 257 GDAV-CASIAPE---QQILAVGTRRGVVELYDLAESASLIRTVSLYDWG---YSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (1052)
Q Consensus 257 ~~~v-~va~spd---~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~---~~~~h~g~V~~l~~SpDg~~Lasg~~Dg 329 (1052)
.+.+ |..+..+ .-+++.|.++|.|.+||+.+ +..+-.+... +. ....|.++|.++.+.+.-..=++|+.+.
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~-~~~~~~~~~~-~kv~~~~ash~qpvlsldyas~~~rGisgga~d 227 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLST-GDKIIQLPQS-SKVESPNASHKQPVLSLDYASSCDRGISGGADD 227 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccC-Cceeeccccc-cccccchhhccCcceeeeechhhcCCcCCCccc
Confidence 4555 6664432 23578899999999999987 4222212111 11 1124999999999998766667888888
Q ss_pred cEEEEEcCCCeEEEEecccc---cCceeeeeEcCCCCCCccceeeeeeeeEEecCCceEEEEecCCcccEEEEec-ccee
Q 001567 330 GLTVWSVSGCRLMSTIRQIS---LSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCC 405 (1052)
Q Consensus 330 ~v~vWd~~~~~l~~tl~~~~---~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~ 405 (1052)
.+..|++.-..-..+++... .-.|+. +.+.+ +|.+
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~g-----------------------------------------vrIRpD~KIl 266 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVSG-----------------------------------------VRIRPDGKIL 266 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCccc-----------------------------------------eEEccCCcEE
Confidence 99999885432111111100 011111 22233 6777
Q ss_pred eeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEc
Q 001567 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (1052)
Q Consensus 406 ~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~ 480 (1052)
+|+++|+.++++...+.. -...+.-|...|+++|||||-..+|.||.|+.| +|++
T Consensus 267 ATAGWD~RiRVyswrtl~--------------------pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 267 ATAGWDHRIRVYSWRTLN--------------------PLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eecccCCcEEEEEeccCC--------------------chhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 899999999887755433 245667789999999999999999999999999 9985
No 204
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=1.4e-09 Score=120.79 Aligned_cols=161 Identities=22% Similarity=0.280 Sum_probs=117.5
Q ss_pred CCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecC
Q 001567 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (1052)
Q Consensus 305 ~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~ 381 (1052)
+|+|-|+|++|+.||.+||+|++|-.+.|||.+..+++..+...|+..|.++.|-|.. +.+.++||. .+++++..
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t--nnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT--NNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC--CCeEEEeccCcceEEEEecc
Confidence 3999999999999999999999999999999999999999887669999999999875 667888887 78888876
Q ss_pred Cc----------eEEEEecCCcccEE--EEec-c-ceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCc-
Q 001567 382 GY----------RLYAIEEGSSERVL--IFSF-G-KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV- 446 (1052)
Q Consensus 382 ~~----------~l~~~~~~~~~~v~--~~s~-~-k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~- 446 (1052)
.. ........|.++|. +..+ + ..+.+++.||+++.+|+...... ..+ ..+|.
T Consensus 126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c-----~p~--------~~~~~~ 192 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC-----NPD--------EDCPSI 192 (758)
T ss_pred cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC-----Ccc--------ccccHH
Confidence 31 11222234566663 3333 3 57778999999998887643220 000 00111
Q ss_pred --ccccCCCcEEEEEEccC-CCEEEEEeCCceE-EEEc
Q 001567 447 --SYISQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDI 480 (1052)
Q Consensus 447 --~~~~h~~~V~~va~Spd-G~~lavag~dG~i-lwd~ 480 (1052)
.|...--...++.+||. -.+||+||.|-++ +||.
T Consensus 193 l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 193 LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 22222234688999986 5689999999999 9995
No 205
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.05 E-value=1.2e-08 Score=113.52 Aligned_cols=261 Identities=12% Similarity=0.142 Sum_probs=151.3
Q ss_pred CCeEEEEEcCCcEEEeecCCceeEEEEEecChhhhhhcCcc-ceEEE-----cCCccEEEEEeCCcEEEEEEEEecCcee
Q 001567 30 NNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGEN-LQAVW-----SPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (1052)
Q Consensus 30 dg~llA~~sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~-~~v~w-----SPDg~~Lav~t~dg~l~i~~l~~~~~~~ 103 (1052)
.|..|+-.-...+++|+.+ ....+. +..+...=.|.+ .+-.| .|+|--+.++=+.|.+.+++.....-..
T Consensus 134 ~gd~lcFnvg~~lyv~~~~-g~~~~~---~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sk 209 (636)
T KOG2394|consen 134 KGDRLCFNVGRELYVYSYR-GAADLS---KPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSK 209 (636)
T ss_pred CCCEEEEecCCeEEEEEcc-Ccchhc---cchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHH
Confidence 3567776666678899875 221111 111110001221 23333 5677788888888888888876422111
Q ss_pred ecCCCCCCCceeeeEeeeeccccccccccceEEEEee---cCCeEEEEecCCcEEEEeccCccccceeecccCCCCccce
Q 001567 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS---DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1052)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~---d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~ 180 (1052)
.+.. . ......+++|+.. +...++++-.+|.++.+.- +.... .....
T Consensus 210 lfne-----------------~--r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~--~~~~~---------~t~p~ 259 (636)
T KOG2394|consen 210 LFNE-----------------E--RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDK--EIVCG---------ATAPS 259 (636)
T ss_pred hhhh-----------------c--ccccccceEEEEEEeCCCceEEEEEecCceEEeec--ccccc---------CCCCc
Confidence 1110 0 0111235666642 3345666777888776532 11111 01111
Q ss_pred eecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee---cCCC
Q 001567 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSG 257 (1052)
Q Consensus 181 ~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~ 257 (1052)
+.++....++..... .. .....++....+......-.+|+|||+++++.+.|+.+|+++..+.+.+ ...-
T Consensus 260 ~~~~k~~~~f~i~t~------ks-k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF 332 (636)
T KOG2394|consen 260 YQALKDGDQFAILTS------KS-KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF 332 (636)
T ss_pred ccccCCCCeeEEeee------ec-cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc
Confidence 111111111110000 00 0011233333333333233567899999999999999999988765443 2233
Q ss_pred CeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC-------------------
Q 001567 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP------------------- 317 (1052)
Q Consensus 258 ~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp------------------- 317 (1052)
+.. ||+|||||++||+|++|--|.||.+.+ .+.+..-++ |...|+.|+|.|
T Consensus 333 GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e-rRVVARGqG--------HkSWVs~VaFDpytt~~ee~~~~~~~~~~~~ 403 (636)
T KOG2394|consen 333 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE-RRVVARGQG--------HKSWVSVVAFDPYTTSTEEWNNFSGMDSTFS 403 (636)
T ss_pred cceEEEEEcCCccEEEecCCcceEEEEEecc-ceEEEeccc--------cccceeeEeeccccccccccccccccccccc
Confidence 556 999999999999999999999999987 777766666 999999999873
Q ss_pred -----------------------------CCCEEEEEEcCCcEEEEEcCCCe
Q 001567 318 -----------------------------DNSAFAVGWKSRGLTVWSVSGCR 340 (1052)
Q Consensus 318 -----------------------------Dg~~Lasg~~Dg~v~vWd~~~~~ 340 (1052)
..+++.+.+.|..+.+||+..-.
T Consensus 404 ~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 404 DVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred chhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 12467788889999999986543
No 206
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.05 E-value=1.7e-08 Score=106.14 Aligned_cols=233 Identities=15% Similarity=0.176 Sum_probs=161.3
Q ss_pred CeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCC--ceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEE
Q 001567 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (1052)
Q Consensus 258 ~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~--~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vW 334 (1052)
.++ |.+||+|+..+|++..+..|.||...... +..++++. |.+.|+.|.|+|.++.|++++.|+.-.||
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~--------Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE--------HDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhh--------hCcceeEEeecCCCCceeEccCCCCcccc
Confidence 466 99999999999999999999999987622 45677777 99999999999999999999999999999
Q ss_pred Ec-CCCeEEEEe--cccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEe----cCCcccEEEEec---
Q 001567 335 SV-SGCRLMSTI--RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE----EGSSERVLIFSF--- 401 (1052)
Q Consensus 335 d~-~~~~l~~tl--~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~----~~~~~~v~~~s~--- 401 (1052)
.. .++.-..++ ..+ ...++++.++|.+ +.++.|+ .+-+|-.++..-|-+. ..+...|..+++
T Consensus 83 ~~~~~~~WkptlvLlRi-NrAAt~V~WsP~e----nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRI-NRAATCVKWSPKE----NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred ccCCCCeeccceeEEEe-ccceeeEeecCcC----ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 99 665433222 223 5678999999998 7777776 5667777666555332 234566777776
Q ss_pred cceeeeeccCCceeeeEeeecCceEEEEecCCcch-heee----eeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE
Q 001567 402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE-LKIL----HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (1052)
Q Consensus 402 ~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~-~~w~----~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i 476 (1052)
.-.+++||.|+..+++..--. .-++.+. ..|. -.++..++....+.|..+.|||+|..||=.+.|+.+
T Consensus 158 nVLlaaGs~D~k~rVfSayIK-------~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIK-------GVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV 230 (361)
T ss_pred cceecccccCcceeEEEEeee-------ccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence 446778889998887654221 1111111 1232 122334454667789999999999999999999999
Q ss_pred -EEEccCCcEEEecCccceeeeEEEEEEEeCC-EEEEE
Q 001567 477 -LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK-IIVVC 512 (1052)
Q Consensus 477 -lwd~~s~~w~~f~~~~~e~~~~v~gl~W~~~-~li~~ 512 (1052)
+=|.....-+ .....+++ +.-..+.|..+ -++++
T Consensus 231 ~~~da~~p~~~-v~~~~~~~-lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 231 SFVDAAGPSER-VQSVATAQ-LPLLSVSWISENSVVAA 266 (361)
T ss_pred EEeecCCCchh-ccchhhcc-CCceeeEeecCCceeec
Confidence 6665544311 11222222 33556777644 34444
No 207
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=5e-08 Score=98.80 Aligned_cols=229 Identities=16% Similarity=0.172 Sum_probs=146.5
Q ss_pred EEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEE
Q 001567 136 SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (1052)
Q Consensus 136 ~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~ 215 (1052)
.++++.+..+++|..+|.+.+.+.+.-..+... ..+.........++.+|.++.
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~--------------------------~~gk~~iv~eqahdgpiy~~~ 69 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE--------------------------PPGKLKIVPEQAHDGPIYYLA 69 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccC--------------------------CCCCcceeeccccCCCeeeee
Confidence 366777888999999999988776533211110 001111122345677787776
Q ss_pred ecCCcceEEEEeeCCcEEEEEecCCceeeeeecccce-------e----cCCCC-----eE-EEEEcCCCCEEEEEeeCC
Q 001567 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-------E----LGSGD-----AV-CASIAPEQQILAVGTRRG 278 (1052)
Q Consensus 216 ~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~-------~----~gh~~-----~v-~va~spd~~~lAsgs~Dg 278 (1052)
|. | ..+++ +.|+.++-|....... | +-|.+ .| .+...|+..-+.+++.|+
T Consensus 70 f~-----------d-~~Lls-~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~ 136 (325)
T KOG0649|consen 70 FH-----------D-DFLLS-GGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG 136 (325)
T ss_pred ee-----------h-hheee-ccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe
Confidence 53 1 22222 3345565554321110 1 22332 34 778888877777777999
Q ss_pred eEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEeccccc--------
Q 001567 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL-------- 350 (1052)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~-------- 350 (1052)
.+.-||+++ ++..+++++ |+.-|.++.-......+.+|++||+++|||..+++.+.++...-.
T Consensus 137 ~~y~~dlE~-G~i~r~~rG--------HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 137 VIYQVDLED-GRIQREYRG--------HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred EEEEEEecC-CEEEEEEcC--------CcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence 999999998 998999998 999999999866566788999999999999999999888764311
Q ss_pred -CceeeeeEcCCCCCCccceeeee--eeeEEecCCceEEEEecCCcccEEEEec-cceeeeeccCCceeeeEe
Q 001567 351 -SSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQV 419 (1052)
Q Consensus 351 -~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~~ 419 (1052)
..+-+++.+ ..-++.|. ..-+|.....+...+..- ..++....| .+.+++++..+.+..|.+
T Consensus 208 g~wigala~~------edWlvCGgGp~lslwhLrsse~t~vfpi-pa~v~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 208 GKWIGALAVN------EDWLVCGGGPKLSLWHLRSSESTCVFPI-PARVHLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred CceeEEEecc------CceEEecCCCceeEEeccCCCceEEEec-ccceeEeeeecceEEEeccccceeeeee
Confidence 112222221 13444444 777898877665554422 234555566 677778887777777764
No 208
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.04 E-value=2.9e-09 Score=119.70 Aligned_cols=119 Identities=20% Similarity=0.247 Sum_probs=98.9
Q ss_pred cccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccc---------c-eecCCCCeE-EEEEcCC-CCE
Q 001567 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI---------D-KELGSGDAV-CASIAPE-QQI 270 (1052)
Q Consensus 203 ~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~---------~-~~~gh~~~v-~va~spd-~~~ 270 (1052)
+....++.|+++.|+|. |.+.++++.+|+.|++|..... + .+.+|.+.+ ++.|+|- ...
T Consensus 622 p~l~Ngt~vtDl~WdPF---------D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadv 692 (1012)
T KOG1445|consen 622 PGLFNGTLVTDLHWDPF---------DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADV 692 (1012)
T ss_pred cccccCceeeecccCCC---------ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhH
Confidence 34556788999998874 4556777888889999976532 1 126788888 9999994 678
Q ss_pred EEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCC
Q 001567 271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1052)
Q Consensus 271 lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~ 339 (1052)
||+++.|.+|++||+.+ +.....+.+ |++.|..++|||||+.+|+.+.||+++|+....+
T Consensus 693 La~asyd~Ti~lWDl~~-~~~~~~l~g--------HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 693 LAVASYDSTIELWDLAN-AKLYSRLVG--------HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred hhhhhccceeeeeehhh-hhhhheecc--------CcCceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 99999999999999998 766667777 9999999999999999999999999999998765
No 209
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.04 E-value=9.6e-09 Score=121.01 Aligned_cols=240 Identities=15% Similarity=0.136 Sum_probs=159.8
Q ss_pred ceEEEEee-CCcEEEEEecCCceeeeeeccccee---------cCCCCeE-EEEEcCCC--CEEEEEeeCCeEEEEecCC
Q 001567 221 RLLFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKE---------LGSGDAV-CASIAPEQ--QILAVGTRRGVVELYDLAE 287 (1052)
Q Consensus 221 ~~~~~~s~-dG~~~~~~~~d~~i~~w~~~~~~~~---------~gh~~~v-~va~spd~--~~lAsgs~Dg~V~vwd~~~ 287 (1052)
..++.++| +..+++.|..+|.+-+||...+... ..|.+++ .+.|-.+- .-+++++.||.|..|+++.
T Consensus 245 v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~ 324 (555)
T KOG1587|consen 245 VTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDM 324 (555)
T ss_pred eeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccc
Confidence 44455555 4556777778888999998765431 3577777 66665543 4499999999999999875
Q ss_pred CCceeEEEEe--ec-CCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEEEEcCCCeE--------EEEecccccCceee
Q 001567 288 SASLIRTVSL--YD-WGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRL--------MSTIRQISLSSISS 355 (1052)
Q Consensus 288 ~~~~~~~l~~--~~-~~~~~~h~g~V~~l~~Sp-Dg~~Lasg~~Dg~v~vWd~~~~~l--------~~tl~~~~~~~v~s 355 (1052)
-..+...+.. .. .+....-...+++++|.| +-+.+++|.++|.|.-=+-.+.+. ......| .+.|.+
T Consensus 325 l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h-~g~v~~ 403 (555)
T KOG1587|consen 325 LSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITH-IGPVYA 403 (555)
T ss_pred cccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccccc-CcceEe
Confidence 2221111111 00 011112356789999998 667899999999987744433221 1222233 678999
Q ss_pred eeEcCCCCCCccceeeee-eeeEEecC-CceEEEEecCCcccE--EEEeccc--eeeeeccCCceeeeEeeecCceEEEE
Q 001567 356 PIVKPNQDCKYEPLMSGT-SMMQWDEY-GYRLYAIEEGSSERV--LIFSFGK--CCLNRGVSGMTYARQVIYGEDRLLVV 429 (1052)
Q Consensus 356 ~~~sp~~~~~~~~l~sg~-~~~~W~~~-~~~l~~~~~~~~~~v--~~~s~~k--~~~s~s~d~~v~~w~~~~~~~~l~~~ 429 (1052)
+.++|-.. ..++.+|. ++++|.-. ....+.....+...| +++++.+ .++++..||.+.+||+++...+
T Consensus 404 v~~nPF~~--k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~---- 477 (555)
T KOG1587|consen 404 VSRNPFYP--KNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE---- 477 (555)
T ss_pred eecCCCcc--ceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC----
Confidence 99888762 12333333 99999876 555555555566667 6667744 5668888999999999887663
Q ss_pred ecCCcchheeeeeccCc-ccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccC
Q 001567 430 QSEDTDELKILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1052)
Q Consensus 430 ~~~~~~~~~w~~~~~p~-~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s 482 (1052)
|. +..-+....+.+.++++|+.||+|...|.+ +|++..
T Consensus 478 ---------------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 478 ---------------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ---------------CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 32 122234556778889999999999999999 999854
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=3e-08 Score=116.80 Aligned_cols=234 Identities=12% Similarity=0.069 Sum_probs=134.2
Q ss_pred CcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeC---CcEEEEEEEEecCceeecCCCCCCCceee
Q 001567 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (1052)
Q Consensus 40 ~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~---dg~l~i~~l~~~~~~~~~~~~~~~~~~~~ 116 (1052)
..|.+||.+.. .+ ....+ ..+.+...+|||||+.||..+. +..+.+|++..+.......
T Consensus 179 ~~l~~~d~dg~-~~-~~lt~------~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~---------- 240 (429)
T PRK03629 179 YELRVSDYDGY-NQ-FVVHR------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS---------- 240 (429)
T ss_pred eeEEEEcCCCC-CC-EEeec------CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC----------
Confidence 36888887522 11 11221 1245678999999999997653 3468888876543211110
Q ss_pred eEeeeeccccccccccceEEEEeecCCeEEEE-ecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecC
Q 001567 117 KISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG-LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (1052)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~-t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~ 195 (1052)
+.+.. ..-.+++|++.++.. ..+|...++.|+........
T Consensus 241 -----------~~~~~-~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~--------------------------- 281 (429)
T PRK03629 241 -----------FPRHN-GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ--------------------------- 281 (429)
T ss_pred -----------CCCCc-CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---------------------------
Confidence 00111 113678888888765 34565445555543321111
Q ss_pred CCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecC-Cceeee--eecccc--eecCCCCeE-EEEEcCCCC
Q 001567 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLA--EFIKID--KELGSGDAV-CASIAPEQQ 269 (1052)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d-~~i~~w--~~~~~~--~~~gh~~~v-~va~spd~~ 269 (1052)
+......+. ...++|||+.++..+++ +..++| +...++ ....+.... +.+|+|||+
T Consensus 282 --------lt~~~~~~~----------~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~ 343 (429)
T PRK03629 282 --------VTDGRSNNT----------EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGK 343 (429)
T ss_pred --------ccCCCCCcC----------ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCC
Confidence 001111122 23568889877766654 344555 333222 122233344 789999999
Q ss_pred EEEEEeeC---CeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCc---EEEEEcCCCeEEE
Q 001567 270 ILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG---LTVWSVSGCRLMS 343 (1052)
Q Consensus 270 ~lAsgs~D---g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~---v~vWd~~~~~l~~ 343 (1052)
.||..+.+ ..|.+||+++ +. ...+.. .......+|||||+.|+.++.+++ +.+|++.|+ ...
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~---------~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~-~~~ 411 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLAT-GG-VQVLTD---------TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKA 411 (429)
T ss_pred EEEEEEccCCCceEEEEECCC-CC-eEEeCC---------CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC-CeE
Confidence 99886654 3578888875 43 333332 112346789999999999998875 677777654 345
Q ss_pred EecccccCceeeeeEcCC
Q 001567 344 TIRQISLSSISSPIVKPN 361 (1052)
Q Consensus 344 tl~~~~~~~v~s~~~sp~ 361 (1052)
.+.++ ...+..++|+|.
T Consensus 412 ~l~~~-~~~~~~p~Wsp~ 428 (429)
T PRK03629 412 RLPAT-DGQVKFPAWSPY 428 (429)
T ss_pred ECccC-CCCcCCcccCCC
Confidence 56654 456777777763
No 211
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=2.4e-09 Score=120.08 Aligned_cols=240 Identities=14% Similarity=0.197 Sum_probs=152.8
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCC-------CceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEE
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES-------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~-------~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg 325 (1052)
..|.+.+ .++|.|-...|++|+.||++++|+++.. -+.+.++.+ |.|+|.|++.++.|..+.+|
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra--------H~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA--------HEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec--------ccCceEEEEecCCceEEEee
Confidence 5688888 9999999999999999999999999431 145667777 99999999999999999999
Q ss_pred EcCCcEEEEEcC------CC----eEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEecCC
Q 001567 326 WKSRGLTVWSVS------GC----RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS 392 (1052)
Q Consensus 326 ~~Dg~v~vWd~~------~~----~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~ 392 (1052)
+-||+|+.|++. .. .+..++.|| ...|..+++|+.. ..+++++ +++.|.+..... .+....
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Gh-tdavw~l~~s~~~----~~Llscs~DgTvr~w~~~~~~~-~~f~~~ 436 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGH-TDAVWLLALSSTK----DRLLSCSSDGTVRLWEPTEESP-CTFGEP 436 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceecc-ccceeeeeecccc----cceeeecCCceEEeeccCCcCc-cccCCc
Confidence 999999999653 11 234567777 7889999999876 5677664 999999877666 222211
Q ss_pred c-ccE-EEEec--cc---eeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCC
Q 001567 393 S-ERV-LIFSF--GK---CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM 465 (1052)
Q Consensus 393 ~-~~v-~~~s~--~k---~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~ 465 (1052)
. ..+ ..+++ .+ .+++... +...+.+...+ ..+.+..... ...|. ....+..+...|.+.
T Consensus 437 ~e~g~Plsvd~~ss~~a~~~~s~~~-~~~~~~~~ev~-s~~~~~~s~~--------~~~~~----~~~~in~vVs~~~~~ 502 (577)
T KOG0642|consen 437 KEHGYPLSVDRTSSRPAHSLASFRF-GYTSIDDMEVV-SDLLIFESSA--------SPGPR----RYPQINKVVSHPTAD 502 (577)
T ss_pred cccCCcceEeeccchhHhhhhhccc-ccccchhhhhh-hheeeccccC--------CCccc----ccCccceEEecCCCC
Confidence 1 111 34444 11 1111100 00001111111 1111111000 00011 123366788889999
Q ss_pred EEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEE--eCCEEEEEEEecCCCeEEEEEeeCC
Q 001567 466 FLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPRY 529 (1052)
Q Consensus 466 ~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W--~~~~li~~~~~~~~~~~elrly~~~ 529 (1052)
...++..|+.+ ++|..+++- .+....|.. .+.+++- .+-+++.+ ..+..+++|..+
T Consensus 503 ~~~~~hed~~Ir~~dn~~~~~-l~s~~a~~~--svtslai~~ng~~l~s~-----s~d~sv~l~kld 561 (577)
T KOG0642|consen 503 ITFTAHEDRSIRFFDNKTGKI-LHSMVAHKD--SVTSLAIDPNGPYLMSG-----SHDGSVRLWKLD 561 (577)
T ss_pred eeEecccCCceeccccccccc-chheeeccc--eecceeecCCCceEEee-----cCCceeehhhcc
Confidence 99999999999 999887752 222222222 2445444 45677766 455778888663
No 212
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.02 E-value=6.5e-09 Score=107.71 Aligned_cols=204 Identities=14% Similarity=0.221 Sum_probs=135.4
Q ss_pred hhhcCccceEEEcCCcc-----EEEEEeCCcEEEEEEEEecCceeec----CCCCCCCceeeeEeeeeccccccccccce
Q 001567 64 VQREGENLQAVWSPDTK-----LIAVVTSSLYLHIFKVQITEKSIQI----GGKQPSGLFFIKISLVLNEQLPFAEKGLS 134 (1052)
Q Consensus 64 l~~~G~~~~v~wSPDg~-----~Lav~t~dg~l~i~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (1052)
+.+.-+.+.+.|.||.+ .|| |++.+||+|.+......... ..+... ...++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLA--Ts~D~LRlWri~~ee~~~~~~~~L~~~kns------------------~~~aP 152 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLA--TSSDFLRLWRIGDEESRVELQSVLNNNKNS------------------EFCAP 152 (364)
T ss_pred CCCCCCccceEecCCccccCcchhh--cccCeEEEEeccCcCCceehhhhhccCccc------------------ccCCc
Confidence 44556778999999984 454 44569999999864432211 111111 11123
Q ss_pred EEEEee---cCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccE
Q 001567 135 VSNIVS---DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (1052)
Q Consensus 135 v~~i~~---d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i 211 (1052)
+++|-. +...+.+++-|-+..+ |+-+..... .++..+..|+..|
T Consensus 153 lTSFDWne~dp~~igtSSiDTTCTi--Wdie~~~~~-------------------------------~vkTQLIAHDKEV 199 (364)
T KOG0290|consen 153 LTSFDWNEVDPNLIGTSSIDTTCTI--WDIETGVSG-------------------------------TVKTQLIAHDKEV 199 (364)
T ss_pred ccccccccCCcceeEeecccCeEEE--EEEeecccc-------------------------------ceeeEEEecCcce
Confidence 445432 3455556665666655 665443111 1124456788889
Q ss_pred EEEEecCCcceEEEEeeCCc-EEEEEecCCceeeeeeccccee------cCCCCeE-EEEEcCC-CCEEEEEeeC-CeEE
Q 001567 212 IWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE------LGSGDAV-CASIAPE-QQILAVGTRR-GVVE 281 (1052)
Q Consensus 212 ~~i~~~~~~~~~~~~s~dG~-~~~~~~~d~~i~~w~~~~~~~~------~gh~~~v-~va~spd-~~~lAsgs~D-g~V~ 281 (1052)
.+++| +.+|+ ++++.+.||.+|++|....+.- .....+. .++||++ -+++|+-..| ..|.
T Consensus 200 ~DIaf----------~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~ 269 (364)
T KOG0290|consen 200 YDIAF----------LKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVV 269 (364)
T ss_pred eEEEe----------ccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence 88887 33333 5677778888888887654221 1213444 8899984 5678876555 5899
Q ss_pred EEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCC-CCEEEEEEcCCcEEEEEcCC
Q 001567 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSG 338 (1052)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpD-g~~Lasg~~Dg~v~vWd~~~ 338 (1052)
+-|++.+...+.++++ |.+.|+.++|.|. +..|+++++|..+.+||+..
T Consensus 270 iLDiR~P~tpva~L~~--------H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 270 ILDIRVPCTPVARLRN--------HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred EEEecCCCcceehhhc--------CcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 9999987788888888 9999999999995 67999999999999999965
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.01 E-value=2.9e-08 Score=119.94 Aligned_cols=271 Identities=15% Similarity=0.129 Sum_probs=168.1
Q ss_pred cCCCccEEEE-EecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee----------cCCCCeE-EEEEcCCCCEEE
Q 001567 205 FPISSAIIWL-ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----------LGSGDAV-CASIAPEQQILA 272 (1052)
Q Consensus 205 ~~~~~~i~~i-~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~----------~gh~~~v-~va~spd~~~lA 272 (1052)
..++.-|..+ ++++..+..++.++++.+++++++||++|+|+......- .-....+ ++..-+.+..+|
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 3444444444 334444556677778899999999999999997643211 1123455 888888999999
Q ss_pred EEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCe-eEEEECC-CCC-EEEEEEcCCcEEEEEcCCCeEEEEecc-c
Q 001567 273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPV-SCIAWTP-DNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQ-I 348 (1052)
Q Consensus 273 sgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V-~~l~~Sp-Dg~-~Lasg~~Dg~v~vWd~~~~~l~~tl~~-~ 348 (1052)
+|+.||.|++.+++..............+.. ...|.| ..-+|.. ++. .++.+...+.+..||+.......+++. -
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~-~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNL-KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccc-cCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 9999999999999763211111110000000 123444 4445655 344 778888889999999987665555543 1
Q ss_pred ccCceeeeeEcCCCCCCccceeeee---eeeEEecCCceEEEEec-CCcccE--EEEec--c--ceee-eec-cCCceee
Q 001567 349 SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE-GSSERV--LIFSF--G--KCCL-NRG-VSGMTYA 416 (1052)
Q Consensus 349 ~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~-~~~~~v--~~~s~--~--k~~~-s~s-~d~~v~~ 416 (1052)
..+.|++++.+|.+ .-++.|. ...+||..=+.++.... ++...+ +.+.+ . ...+ +++ ..+-+..
T Consensus 1194 ~hG~vTSi~idp~~----~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWC----NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred cccceeEEEecCCc----eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 13579999999987 6777775 78899987655555432 233333 33333 3 2333 333 5677899
Q ss_pred eEeeecCceEEEEecCCcchheeeeeccCcc--cccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 001567 417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVS--YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1052)
Q Consensus 417 w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~--~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~ 483 (1052)
|++..|..+..+..+++.+.+.|.. |.. -..+.-+...+++..-+..+.+||.|+.+ .||...-
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls~~~---Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYAL---PSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eecccCcceEEEEcCCCCcchhhhc---ccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 9999886655444554544444321 211 00122234556666567788899999999 9998653
No 214
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.00 E-value=1.8e-08 Score=104.97 Aligned_cols=112 Identities=19% Similarity=0.281 Sum_probs=79.8
Q ss_pred ccEEEEEecCCcceEEEEeeCCcEEEEEe--cCCceeeeeecccceecCCCCeE-EEEEcCCCCEEEEEee---CCeEEE
Q 001567 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSV--SKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTR---RGVVEL 282 (1052)
Q Consensus 209 ~~i~~i~~~~~~~~~~~~s~dG~~~~~~~--~d~~i~~w~~~~~~~~~gh~~~v-~va~spd~~~lAsgs~---Dg~V~v 282 (1052)
..|.+++| +|+|+.+++.. .+..+.+|+........-+...+ ++.|||+|++||+|+. .|.|.+
T Consensus 60 ~~I~~~~W----------sP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~ 129 (194)
T PF08662_consen 60 GPIHDVAW----------SPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEF 129 (194)
T ss_pred CceEEEEE----------CcCCCEEEEEEccCCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEE
Confidence 34777666 66676554433 34578888875322222234455 8999999999999874 477999
Q ss_pred EecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEc------CCcEEEEEcCCCeE
Q 001567 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCRL 341 (1052)
Q Consensus 283 wd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~------Dg~v~vWd~~~~~l 341 (1052)
||+++ .+.+.+.. | ..++.++|||||++++++.. |++++||+..|..+
T Consensus 130 wd~~~-~~~i~~~~---------~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 130 WDVRK-KKKISTFE---------H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred EECCC-CEEeeccc---------c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 99986 55554432 3 34789999999999999864 79999999987643
No 215
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.00 E-value=3.1e-08 Score=103.16 Aligned_cols=98 Identities=23% Similarity=0.352 Sum_probs=78.0
Q ss_pred CCeE-EEEEcCCCCEEEEE--eeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC---Cc
Q 001567 257 GDAV-CASIAPEQQILAVG--TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RG 330 (1052)
Q Consensus 257 ~~~v-~va~spd~~~lAsg--s~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D---g~ 330 (1052)
.++| +++|+|+|+.+|+. ..++.|.+||++ +..+..+ +.+.++.|.|||+|++||+|+.+ |.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~~----------~~~~~n~i~wsP~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFSF----------GTQPRNTISWSPDGRFLVLAGFGNLNGD 126 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEee----------cCCCceEEEECCCCCEEEEEEccCCCcE
Confidence 4458 99999999987654 466799999996 4444443 45678999999999999998754 56
Q ss_pred EEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee
Q 001567 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1052)
Q Consensus 331 v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (1052)
+.+||+...+.+.+... ..++.++|+|+| +.+++.+
T Consensus 127 l~~wd~~~~~~i~~~~~---~~~t~~~WsPdG----r~~~ta~ 162 (194)
T PF08662_consen 127 LEFWDVRKKKKISTFEH---SDATDVEWSPDG----RYLATAT 162 (194)
T ss_pred EEEEECCCCEEeecccc---CcEEEEEEcCCC----CEEEEEE
Confidence 99999998888877653 347899999999 8888765
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=9.9e-09 Score=109.29 Aligned_cols=187 Identities=21% Similarity=0.258 Sum_probs=134.8
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCC-CCEEEEEEcCCcEEEEEcCCC
Q 001567 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGC 339 (1052)
Q Consensus 261 ~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpD-g~~Lasg~~Dg~v~vWd~~~~ 339 (1052)
.++|++.---+|++..|-+||+|+-.. .....++. .....|+|++|.|. ++-||+|+. ++|.+|.....
T Consensus 103 ~~aWhqH~~~fava~nddvVriy~kss--t~pt~Lks-------~sQrnvtclawRPlsaselavgCr-~gIciW~~s~t 172 (445)
T KOG2139|consen 103 GVAWHQHIIAFAVATNDDVVRIYDKSS--TCPTKLKS-------VSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRT 172 (445)
T ss_pred eEeechhhhhhhhhccCcEEEEeccCC--CCCceecc-------hhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcc
Confidence 688998777899999999999999765 22233332 13567999999995 568999988 79999987421
Q ss_pred e------------EEEEecccccCceeeeeEcCCCCCCccceeeee----eeeEEecCCceEEEEecCCc--ccEEEEec
Q 001567 340 R------------LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSS--ERVLIFSF 401 (1052)
Q Consensus 340 ~------------l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~~~--~~v~~~s~ 401 (1052)
. ....+++.+...|++.++.+++ ..+++++ .+++|+++++...-.....- -..+.+++
T Consensus 173 ln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg----t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP 248 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG----TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP 248 (445)
T ss_pred cccccccccccccchhheeCCCCceeeEEEEcCCC----CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC
Confidence 1 1122334345789999999998 7777665 89999999887655442222 23578888
Q ss_pred -cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceEEEEc
Q 001567 402 -GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 480 (1052)
Q Consensus 402 -~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~ilwd~ 480 (1052)
+..+..+..|+.-++|...+.-.. ....-..+.|...+|||+|++|..+......+|++
T Consensus 249 dgd~lfaAt~davfrlw~e~q~wt~--------------------erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQENQSWTK--------------------ERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred CCCEEEEecccceeeeehhccccee--------------------cceeccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence 889999999999999975443221 01111234799999999999999887766668887
Q ss_pred c
Q 001567 481 R 481 (1052)
Q Consensus 481 ~ 481 (1052)
.
T Consensus 309 ~ 309 (445)
T KOG2139|consen 309 T 309 (445)
T ss_pred e
Confidence 4
No 217
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.96 E-value=4.7e-08 Score=102.92 Aligned_cols=235 Identities=16% Similarity=0.154 Sum_probs=151.1
Q ss_pred EEeeCCcEEEEEecCCceeeeeeccccee------cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEe
Q 001567 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1052)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~w~~~~~~~~------~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~ 297 (1052)
++++|+..++++.+...+.++.....+.| ..|...| ++.|+|....|++|+.|..-.||....++.-..++..
T Consensus 17 Awn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvL 96 (361)
T KOG1523|consen 17 AWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVL 96 (361)
T ss_pred eecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeE
Confidence 45788888888887777777665544423 5788888 9999999999999999999999998543554444433
Q ss_pred ecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEE---EecccccCceeeeeEcCCCCCCccceeeee-
Q 001567 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS---TIRQISLSSISSPIVKPNQDCKYEPLMSGT- 373 (1052)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~---tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~- 373 (1052)
.. +.+.+++|.|+|.++.+|+|+.-+.|.||-.++..-.. .++-...+.|+++.++|++ -.++.|+
T Consensus 97 lR------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn----VLlaaGs~ 166 (361)
T KOG1523|consen 97 LR------INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN----VLLAAGST 166 (361)
T ss_pred EE------eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc----ceeccccc
Confidence 22 78999999999999999999999999999887654321 1222225779999999997 6777666
Q ss_pred --eeeEEec-----CC-------------ceEEEEecCCcccE--EEEec-cceeeeeccCCceeeeEeeecCceEEEEe
Q 001567 374 --SMMQWDE-----YG-------------YRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (1052)
Q Consensus 374 --~~~~W~~-----~~-------------~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~ 430 (1052)
..++++. +. |+++.......+.+ +.|++ |..++=.+.|.++.+-|......+
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~----- 241 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER----- 241 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh-----
Confidence 3333321 10 12222211222334 44444 666666666666655443322221
Q ss_pred cCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccC-CcEEEec
Q 001567 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ-KKWRVFG 489 (1052)
Q Consensus 431 ~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s-~~w~~f~ 489 (1052)
+.......-|.+++.|-.+ ..++.||.|... ++.... +.|...+
T Consensus 242 --------------v~~~~~~~lP~ls~~~ise-~~vv~ag~~c~P~lf~~~~~~~l~~~~ 287 (361)
T KOG1523|consen 242 --------------VQSVATAQLPLLSVSWISE-NSVVAAGYDCGPVLFVTDEEGGLSFAR 287 (361)
T ss_pred --------------ccchhhccCCceeeEeecC-CceeecCCCCCceEEEeccccceeeeh
Confidence 2222222367788888534 456667777555 666543 3565433
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=2.4e-07 Score=109.74 Aligned_cols=196 Identities=14% Similarity=0.111 Sum_probs=119.1
Q ss_pred ecCCCCeE-EEEEcCCCCEEEEEee---CCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEE-EEEc
Q 001567 253 ELGSGDAV-CASIAPEQQILAVGTR---RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWK 327 (1052)
Q Consensus 253 ~~gh~~~v-~va~spd~~~lAsgs~---Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~La-sg~~ 327 (1052)
+..|...+ +.+|+|||+.||..+. +..|.+||+.+ +.. ..+.. +.+.+.+.+|||||+.|+ +.+.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~~-~~l~~--------~~g~~~~~~~SPDG~~la~~~~~ 266 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQR-ELVGN--------FPGMTFAPRFSPDGRKVVMSLSQ 266 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-CcE-EEeec--------CCCcccCcEECCCCCEEEEEEec
Confidence 35666677 9999999999998764 46899999976 443 33444 677788999999999776 4555
Q ss_pred CCc--EEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee------eeeEEecCCceEEEEecCCcccE--E
Q 001567 328 SRG--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSSERV--L 397 (1052)
Q Consensus 328 Dg~--v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~~~~~~~~v--~ 397 (1052)
++. |.+||+.++.. ..+..+ .....++.|+|++ +.++..+ .+..|+.++++......+ ...+ .
T Consensus 267 ~g~~~Iy~~d~~~~~~-~~Lt~~-~~~~~~~~~spDG----~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~ 339 (435)
T PRK05137 267 GGNTDIYTMDLRSGTT-TRLTDS-PAIDTSPSYSPDG----SQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTP 339 (435)
T ss_pred CCCceEEEEECCCCce-EEccCC-CCccCceeEcCCC----CEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCe
Confidence 555 67778887764 344443 3446678999998 5544322 466677776654433322 1122 3
Q ss_pred EEec-cceeeeeccCC---ceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCC
Q 001567 398 IFSF-GKCCLNRGVSG---MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (1052)
Q Consensus 398 ~~s~-~k~~~s~s~d~---~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~d 473 (1052)
.+++ ++.++..+.++ .+.+|++..+..+ ...+.+.+...+|||||++|+..+.+
T Consensus 340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~----------------------~lt~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER----------------------ILTSGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred EECCCCCEEEEEEcCCCceEEEEEECCCCceE----------------------eccCCCCCCCCeECCCCCEEEEEEcc
Confidence 4555 66665444322 2223332111110 01112235668999999999876553
Q ss_pred c------eE-EEEccCCcEEE
Q 001567 474 G------LI-LYDIRQKKWRV 487 (1052)
Q Consensus 474 G------~i-lwd~~s~~w~~ 487 (1052)
+ .+ ++++.++.-+.
T Consensus 398 ~~~~~~~~L~~~dl~g~~~~~ 418 (435)
T PRK05137 398 PGSGGAPKLYTVDLTGRNERE 418 (435)
T ss_pred CCCCCcceEEEEECCCCceEE
Confidence 2 34 66766654443
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=1.5e-07 Score=100.47 Aligned_cols=171 Identities=19% Similarity=0.234 Sum_probs=108.3
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEee-CCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcE
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~-Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v 331 (1052)
.|| ..| +++|++||..+++++- |..|.|||.++ +..++.... --|.++-+.|||||.+|..+.-|++.
T Consensus 193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~--------glgg~slLkwSPdgd~lfaAt~davf 262 (445)
T KOG2139|consen 193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPK--------GLGGFSLLKWSPDGDVLFAATCDAVF 262 (445)
T ss_pred CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCccccccc--------CCCceeeEEEcCCCCEEEEeccccee
Confidence 567 455 9999999999999885 46899999998 655543322 46889999999999999999999999
Q ss_pred EEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee-eeeEEecCCceEEEEecCCcccEEEEec-cceeeeec
Q 001567 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRG 409 (1052)
Q Consensus 332 ~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s 409 (1052)
++|+..... .+.+ -.+.+|. +..+|++.|..++.+..+ ...++.++| ++..+.-.
T Consensus 263 rlw~e~q~w--t~er--------------------w~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~ 319 (445)
T KOG2139|consen 263 RLWQENQSW--TKER--------------------WILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLR 319 (445)
T ss_pred eeehhcccc--eecc--------------------eeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccC
Confidence 999654321 1111 1111222 566788888888777765 556777777 43322111
Q ss_pred cCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCc
Q 001567 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (1052)
Q Consensus 410 ~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG 474 (1052)
.+.+ |.++--.+ .++ -.+.-+++. -.+++.+++|+|.|.|||+--+.+
T Consensus 320 -~~~~--k~~lliaD---------L~e---~ti~ag~~l--~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 320 -PQSI--KRVLLIAD---------LQE---VTICAGQRL--CCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred -cccc--eeeeeecc---------chh---hhhhcCccc--ccCccceeeECCCCCEEEEEEcCC
Confidence 1111 21111111 000 000011111 146889999999999999875544
No 220
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.90 E-value=3.7e-08 Score=102.18 Aligned_cols=201 Identities=11% Similarity=0.145 Sum_probs=118.8
Q ss_pred CCCCeE-EEEEcCCC-----CEEEEEeeCCeEEEEecCCCCceeE---EEEeecCCCCCCCCCCeeEEEECC-CCCEEEE
Q 001567 255 GSGDAV-CASIAPEQ-----QILAVGTRRGVVELYDLAESASLIR---TVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAV 324 (1052)
Q Consensus 255 gh~~~v-~va~spd~-----~~lAsgs~Dg~V~vwd~~~~~~~~~---~l~~~~~~~~~~h~g~V~~l~~Sp-Dg~~Las 324 (1052)
.|.-++ .+-|.|+. ++||+.+ ..+|+|.+......++ .+.. .-...+.+++++..|.- |-+++.+
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~---~kns~~~aPlTSFDWne~dp~~igt 168 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNN---NKNSEFCAPLTSFDWNEVDPNLIGT 168 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhcc---CcccccCCcccccccccCCcceeEe
Confidence 566677 88898875 4677744 4699999975222111 1111 11234788999999987 8889999
Q ss_pred EEcCCcEEEEEcCCCe---EEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecCCce---EEEEecCCccc
Q 001567 325 GWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR---LYAIEEGSSER 395 (1052)
Q Consensus 325 g~~Dg~v~vWd~~~~~---l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~---l~~~~~~~~~~ 395 (1052)
++-|-|..|||+..+. +...|-.| ..+|..++|...+ .+.++|.+ +++++|...-+ ++.........
T Consensus 169 SSiDTTCTiWdie~~~~~~vkTQLIAH-DKEV~DIaf~~~s---~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p 244 (364)
T KOG0290|consen 169 SSIDTTCTIWDIETGVSGTVKTQLIAH-DKEVYDIAFLKGS---RDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP 244 (364)
T ss_pred ecccCeEEEEEEeeccccceeeEEEec-CcceeEEEeccCc---cceEEEecCCCcEEEEEecccccceEEecCCCCCCc
Confidence 9999999999998762 23334444 5666666665532 12333322 44444443211 11111111223
Q ss_pred EEEEec----cceeeeeccCC-ceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccC-CCEEEE
Q 001567 396 VLIFSF----GKCCLNRGVSG-MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAV 469 (1052)
Q Consensus 396 v~~~s~----~k~~~s~s~d~-~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~Spd-G~~lav 469 (1052)
++.+++ ...++|-..|. .+.+-|+..... ....+.+|...|+.++|.|. +..+++
T Consensus 245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t-------------------pva~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT-------------------PVARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred ceeeccCcCCchHHhhhhcCCceEEEEEecCCCc-------------------ceehhhcCcccccceEecCCCCceeee
Confidence 333333 11223322222 122222221111 11467799999999999986 779999
Q ss_pred EeCCceE-EEEccCC
Q 001567 470 AGLHGLI-LYDIRQK 483 (1052)
Q Consensus 470 ag~dG~i-lwd~~s~ 483 (1052)
||.|..+ +||++.-
T Consensus 306 aGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 306 AGDDCQALIWDLQQM 320 (364)
T ss_pred cCCcceEEEEecccc
Confidence 9999999 9999763
No 221
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=8.1e-08 Score=102.80 Aligned_cols=262 Identities=13% Similarity=0.137 Sum_probs=167.3
Q ss_pred cccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeecc------ccee--cC--CCCeE-EEEEcCCCCEE
Q 001567 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK------IDKE--LG--SGDAV-CASIAPEQQIL 271 (1052)
Q Consensus 203 ~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~------~~~~--~g--h~~~v-~va~spd~~~l 271 (1052)
.+.+|-++|..+.| +.+|+++++|++|...++|+... ++.. .+ |...+ |++|+...+.+
T Consensus 51 D~~~H~GCiNAlqF----------S~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~ 120 (609)
T KOG4227|consen 51 DVREHTGCINALQF----------SHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFL 120 (609)
T ss_pred hhhhhccccceeee----------ccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeE
Confidence 34567778877765 78899999999999999998652 1222 23 44567 99999999999
Q ss_pred EEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCe----EEEEecc
Q 001567 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR----LMSTIRQ 347 (1052)
Q Consensus 272 Asgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~----l~~tl~~ 347 (1052)
.+|..+|+|...|+.+ .+.+..+... ...|.|..+.-+|-.+.||+.++++.|.+||..... +++.-.
T Consensus 121 ~SG~~~~~VI~HDiEt-~qsi~V~~~~------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN- 192 (609)
T KOG4227|consen 121 YSGERWGTVIKHDIET-KQSIYVANEN------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN- 192 (609)
T ss_pred ecCCCcceeEeeeccc-ceeeeeeccc------CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC-
Confidence 9999999999999987 5555544331 146799999999998999999999999999986533 333222
Q ss_pred cccCceeeeeEcCCCCCCccceeeee---------------------------------eeeEEecCCceEEEEecC---
Q 001567 348 ISLSSISSPIVKPNQDCKYEPLMSGT---------------------------------SMMQWDEYGYRLYAIEEG--- 391 (1052)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~~l~sg~---------------------------------~~~~W~~~~~~l~~~~~~--- 391 (1052)
. .....++.|+|..+ ..+++.+ -...|++.|.+++....+
T Consensus 193 ~-~~~F~t~~F~P~~P---~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P 268 (609)
T KOG4227|consen 193 S-GKNFYTAEFHPETP---ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP 268 (609)
T ss_pred C-CccceeeeecCCCc---eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC
Confidence 1 23456666766542 1111110 123566666655443322
Q ss_pred -----Cccc------------------EEEEec--cceeeeeccCCceeeeEeeecCceEEEE-ecCCcchheee-ee-c
Q 001567 392 -----SSER------------------VLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVV-QSEDTDELKIL-HL-N 443 (1052)
Q Consensus 392 -----~~~~------------------v~~~s~--~k~~~s~s~d~~v~~w~~~~~~~~l~~~-~~~~~~~~~w~-~~-~ 443 (1052)
|..+ +....| ...+++|+.+-.+++|.+....+.--.. -|.+..+..-. .+ .
T Consensus 269 ~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 269 LYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred EEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 1111 112222 2345677777777777765433311000 01111111000 00 1
Q ss_pred cCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEE
Q 001567 444 LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (1052)
Q Consensus 444 ~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~ 486 (1052)
-...+.||..-+.+|.|+|...+|++.|-...+ +|+--...|.
T Consensus 349 ~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r~P~~ 392 (609)
T KOG4227|consen 349 ELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRLPWS 392 (609)
T ss_pred eeEEEecccccccceeecCCcceEeccchhhheeccccccCCcc
Confidence 123567999999999999999999999998888 9986554454
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=1.8e-07 Score=110.65 Aligned_cols=232 Identities=14% Similarity=0.108 Sum_probs=127.8
Q ss_pred cEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCC---cEEEEEEEEecCceeecCCCCCCCceeee
Q 001567 41 HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIGGKQPSGLFFIK 117 (1052)
Q Consensus 41 ~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d---g~l~i~~l~~~~~~~~~~~~~~~~~~~~~ 117 (1052)
+|.|||.. ...+ ....+ ..+.+...+|||||+.||..+.. ..|.+|++..+...... ..
T Consensus 185 ~l~i~D~~-g~~~-~~lt~------~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~-~~--------- 246 (433)
T PRK04922 185 ALQVADSD-GYNP-QTILR------SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA-SF--------- 246 (433)
T ss_pred EEEEECCC-CCCc-eEeec------CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec-cC---------
Confidence 68888874 2211 11111 23456789999999999987743 46888888654321110 00
Q ss_pred EeeeeccccccccccceEEEEeecCCeEEEE-ecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCC
Q 001567 118 ISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG-LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTS 196 (1052)
Q Consensus 118 ~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~-t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~ 196 (1052)
.+. .....+++|++.++++ +.+|.-.++.|+........
T Consensus 247 -----------~g~-~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~---------------------------- 286 (433)
T PRK04922 247 -----------RGI-NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR---------------------------- 286 (433)
T ss_pred -----------CCC-ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----------------------------
Confidence 000 0122567788877654 44564444445543221111
Q ss_pred CCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEec-CCceeee--eecccce--ecCCCCeE-EEEEcCCCCE
Q 001567 197 GAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLA--EFIKIDK--ELGSGDAV-CASIAPEQQI 270 (1052)
Q Consensus 197 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-d~~i~~w--~~~~~~~--~~gh~~~v-~va~spd~~~ 270 (1052)
+..+... .....++|||+.++..++ ++...+| +...++. +..+.... ..+|||||+.
T Consensus 287 -------lt~~~~~----------~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 287 -------LTNHFGI----------DTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKK 349 (433)
T ss_pred -------CccCCCC----------ccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCE
Confidence 0000001 112356888887777664 3343444 4333221 22222334 7899999999
Q ss_pred EEEEeeCC---eEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC---CcEEEEEcCCCeEEEE
Q 001567 271 LAVGTRRG---VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGCRLMST 344 (1052)
Q Consensus 271 lAsgs~Dg---~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D---g~v~vWd~~~~~l~~t 344 (1052)
||..+.++ .|.+||+.+ +.. ..+. +.+.....+|+|||+.++..+.+ +.+.++++.++ ....
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~-g~~-~~Lt---------~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~ 417 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLST-GSV-RTLT---------PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQR 417 (433)
T ss_pred EEEEECCCCceeEEEEECCC-CCe-EECC---------CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEE
Confidence 99876543 689999875 443 2332 22234567999999988877654 35777788664 3444
Q ss_pred ecccccCceeeeeEcC
Q 001567 345 IRQISLSSISSPIVKP 360 (1052)
Q Consensus 345 l~~~~~~~v~s~~~sp 360 (1052)
+..+ ...+..++|+|
T Consensus 418 l~~~-~g~~~~p~wsp 432 (433)
T PRK04922 418 LVSA-DGEVREPAWSP 432 (433)
T ss_pred cccC-CCCCCCCccCC
Confidence 4432 34455566655
No 223
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=2.5e-07 Score=104.00 Aligned_cols=130 Identities=21% Similarity=0.251 Sum_probs=97.1
Q ss_pred CCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCC-----eeEEEECCCCCEEEEEEcCCc
Q 001567 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP-----VSCIAWTPDNSAFAVGWKSRG 330 (1052)
Q Consensus 257 ~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~-----V~~l~~SpDg~~Lasg~~Dg~ 330 (1052)
...+ +|.+|+-..+||+|+.||.|..||..+ .+...++..... -..|.|. |++++|+.||-.+++|..+|.
T Consensus 175 ~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-ksrv~~l~~~~~--v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~ 251 (703)
T KOG2321|consen 175 SGELNVVSINEEHGLLACGTEDGVVEFWDPRD-KSRVGTLDAASS--VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS 251 (703)
T ss_pred cccceeeeecCccceEEecccCceEEEecchh-hhhheeeecccc--cCCCccccccCcceEEEecCCceeEEeeccCCc
Confidence 4667 999999999999999999999999887 444444443111 0124444 999999999999999999999
Q ss_pred EEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee--eeeEEecCCceEEEEecC
Q 001567 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEG 391 (1052)
Q Consensus 331 v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~ 391 (1052)
+.|+|+...+.+..-.....-++..+.|-+.+ ....++|.. .+++|+..+|+.+.....
T Consensus 252 v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~--~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 252 VLIYDLRASKPLLVKDHGYELPIKKLDWQDTD--QQNKVVSMDKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred EEEEEcccCCceeecccCCccceeeecccccC--CCceEEecchHHhhhcccccCCceeeccc
Confidence 99999988776655443334567777776663 224566554 788999999988777654
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.85 E-value=7.2e-09 Score=113.55 Aligned_cols=215 Identities=15% Similarity=0.161 Sum_probs=137.1
Q ss_pred hhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEee-cC
Q 001567 64 VQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DN 142 (1052)
Q Consensus 64 l~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-d~ 142 (1052)
+.++|++ .+.++.+|+.|+.+...|+|--+|..+..-..-+ ...+ .|..+.. .+
T Consensus 127 l~eFGPY-~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei---------------~v~E---------tv~Dv~~LHn 181 (545)
T KOG1272|consen 127 LPEFGPY-HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI---------------NVME---------TVRDVTFLHN 181 (545)
T ss_pred ccccCCe-eeeecCCccEEEecCCccceeeeecccceeeeee---------------ehhh---------hhhhhhhhcc
Confidence 3456775 8899999999999999999999998754321100 0000 1111111 12
Q ss_pred CeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcce
Q 001567 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (1052)
Q Consensus 143 ~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (1052)
+.++.......+++++-+|.. .++......|..++|
T Consensus 182 eq~~AVAQK~y~yvYD~~GtE--------------------------------------lHClk~~~~v~rLeF------ 217 (545)
T KOG1272|consen 182 EQFFAVAQKKYVYVYDNNGTE--------------------------------------LHCLKRHIRVARLEF------ 217 (545)
T ss_pred hHHHHhhhhceEEEecCCCcE--------------------------------------EeehhhcCchhhhcc------
Confidence 333333444555554332211 122233344556665
Q ss_pred EEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEee
Q 001567 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1052)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~ 298 (1052)
.|---++++++..+-++--|...++.. ..-.+.+ .+.-||-...+-+|..+|+|.+|.-.. .+++..+-.
T Consensus 218 ----LPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s-kePLvKiLc- 291 (545)
T KOG1272|consen 218 ----LPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS-KEPLVKILC- 291 (545)
T ss_pred ----cchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC-cchHHHHHh-
Confidence 444445555555555665666666543 1123455 788999999999999999999999876 554444444
Q ss_pred cCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCC
Q 001567 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1052)
Q Consensus 299 ~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (1052)
|.|+|.+|++.|+|+++||++.|+.++|||+.+-....++... ...+.+++|..+
T Consensus 292 -------H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp--~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 292 -------HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP--HPASNLSLSQKG 346 (545)
T ss_pred -------cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC--CCcccccccccc
Confidence 9999999999999999999999999999999876655555441 234445555443
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=3.1e-07 Score=108.25 Aligned_cols=207 Identities=14% Similarity=0.130 Sum_probs=122.8
Q ss_pred eEEEEeeCCcEEEEEec---CCceeeeeecccce--ecCCCCeE-EEEEcCCCCEEEEE-eeCC--eEEEEecCCCCcee
Q 001567 222 LLFVLYSNGQLMSCSVS---KKGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAVG-TRRG--VVELYDLAESASLI 292 (1052)
Q Consensus 222 ~~~~~s~dG~~~~~~~~---d~~i~~w~~~~~~~--~~gh~~~v-~va~spd~~~lAsg-s~Dg--~V~vwd~~~~~~~~ 292 (1052)
....++|||+.++..+. +..+.+|+...++. +....+.+ ..+|||||+.||.. +.+| .|.+||+++ +..
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~~- 279 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQI- 279 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CCE-
Confidence 34567899987776542 33566777665532 22223334 78999999998865 4455 588888875 443
Q ss_pred EEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC-CcEEEE--EcCCCeEEEEecccccCceeeeeEcCCCCCCccce
Q 001567 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVW--SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (1052)
Q Consensus 293 ~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D-g~v~vW--d~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l 369 (1052)
..+.. +...+...+|||||+.|+..+.+ +...|| ++.++.. ..+... ......+.++|++ +.+
T Consensus 280 ~~lt~--------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~-~~~~~~~~~SpDG----~~I 345 (429)
T PRK03629 280 RQVTD--------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWE-GSQNQDADVSSDG----KFM 345 (429)
T ss_pred EEccC--------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecC-CCCccCEEECCCC----CEE
Confidence 33332 44567889999999998877764 455666 5666543 233322 2335678899998 555
Q ss_pred eeee------eeeEEecCCceEEEEecCCcccEEEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeee
Q 001567 370 MSGT------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (1052)
Q Consensus 370 ~sg~------~~~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~ 442 (1052)
+... .+.+|+.++++...........-..+++ ++.++..+.++....+.+..-+.+
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~----------------- 408 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR----------------- 408 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC-----------------
Confidence 4322 4667888777654433222222245566 777777776665333222221110
Q ss_pred ccCcccccCCCcEEEEEEcc
Q 001567 443 NLPVSYISQNWPVQHVAASK 462 (1052)
Q Consensus 443 ~~p~~~~~h~~~V~~va~Sp 462 (1052)
.+..+.+|.+.++..+|||
T Consensus 409 -~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 409 -FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred -CeEECccCCCCcCCcccCC
Confidence 1333445667777788876
No 226
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.84 E-value=2.4e-08 Score=104.96 Aligned_cols=130 Identities=13% Similarity=0.192 Sum_probs=88.9
Q ss_pred ceEEEEeeCCcEEEEEecCCceeeeeeccccee--cCCCCeE-EEEEcCCCCE-EEEEeeCCeEEEEecCCCCceeEEEE
Q 001567 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVS 296 (1052)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~gh~~~v-~va~spd~~~-lAsgs~Dg~V~vwd~~~~~~~~~~l~ 296 (1052)
+.++.|||+|+++++.+.- .+-+-|..+.+.. .-.-+.| .+.|+.|... |.....|+.|.+|++.. .+-...+.
T Consensus 11 ~~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q-pew~ckId 88 (447)
T KOG4497|consen 11 NPFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ-PEWYCKID 88 (447)
T ss_pred CCceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeec-ceeEEEec
Confidence 3467899999999987654 3334444433221 0012334 7888888765 45667899999999975 44344444
Q ss_pred eecCCCCCCCCCCeeEEEECCCCC-EEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCC
Q 001567 297 LYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1052)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~SpDg~-~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (1052)
. ...++.+++|||||+ .|.+..-|-.|.||++.+..... -.|....+..++|+|++
T Consensus 89 e--------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~pK~~~kg~~f~~dg 145 (447)
T KOG4497|consen 89 E--------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHPKTNVKGYAFHPDG 145 (447)
T ss_pred c--------CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE--ecccccCceeEEECCCC
Confidence 4 577899999999996 55666678899999998765432 23335567889999998
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=3.8e-07 Score=107.57 Aligned_cols=171 Identities=15% Similarity=0.184 Sum_probs=104.7
Q ss_pred EEEeeCCcEEEEEecC---Cceeeeeeccccee--cCCCCeE-EEEEcCCCCEEEE-EeeCCeEEEEecCCCCceeEEEE
Q 001567 224 FVLYSNGQLMSCSVSK---KGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAV-GTRRGVVELYDLAESASLIRTVS 296 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d---~~i~~w~~~~~~~~--~gh~~~v-~va~spd~~~lAs-gs~Dg~V~vwd~~~~~~~~~~l~ 296 (1052)
.+++|||+.++..+.+ ..+.+|+...++.. ....+.+ +.+|||||+.||. .+.+|...||.++..+...+.+.
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt 280 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT 280 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC
Confidence 3468999887776643 34778887665432 2233344 8899999998874 57788888887654344344443
Q ss_pred eecCCCCCCCCCCeeEEEECCCCCEEEEEEc-CCcEEEEEc--CCCeEEE-EecccccCceeeeeEcCCCCCCccceeee
Q 001567 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSV--SGCRLMS-TIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (1052)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~-Dg~v~vWd~--~~~~l~~-tl~~~~~~~v~s~~~sp~~~~~~~~l~sg 372 (1052)
. +.+.+.+.+|||||+.|+..+. ++...||.+ .++.... +..+ .....+.|+|++ +.++..
T Consensus 281 ~--------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g---~~~~~~~~SpDG----~~Ia~~ 345 (427)
T PRK02889 281 Q--------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG---SYNTSPRISPDG----KLLAYI 345 (427)
T ss_pred C--------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC---CCcCceEECCCC----CEEEEE
Confidence 3 5566678899999998886654 467777765 4443222 2222 223467899998 555432
Q ss_pred e------eeeEEecCCceEEEEecCCcccEEEEec-cceeeeec
Q 001567 373 T------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRG 409 (1052)
Q Consensus 373 ~------~~~~W~~~~~~l~~~~~~~~~~v~~~s~-~k~~~s~s 409 (1052)
. .+.+|+..+++......+....-..+++ ++.++..+
T Consensus 346 s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 346 SRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYAT 389 (427)
T ss_pred EccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEE
Confidence 2 4778888776654333222222234555 55555444
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.80 E-value=1.8e-05 Score=90.79 Aligned_cols=282 Identities=13% Similarity=0.112 Sum_probs=152.0
Q ss_pred EEEEeeCCcEEEEEecCCceeeeeeccccee---cCCCCeEEEEEcCCCCEEEEEe-eCCeEEEEecCCCCceeEEEEee
Q 001567 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLY 298 (1052)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~v~va~spd~~~lAsgs-~Dg~V~vwd~~~~~~~~~~l~~~ 298 (1052)
.+.+++||+++++.+.|+.+.++|..+.+.. ..-..+.++++|+||+++++++ .++++.++|.++ .+.++++...
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~~ 119 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET-LEPVKTIPTG 119 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEecccc-ccceeecccc
Confidence 3567999999998889999999998877644 2223455999999999988776 689999999987 7777776653
Q ss_pred cCCCCCCCCCCeeEEEECCCCCEEEEEEcC-CcEEEEEcCCCeE--EEEecccccCceeeeeEcCCCCCCccceeeee--
Q 001567 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (1052)
Q Consensus 299 ~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D-g~v~vWd~~~~~l--~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-- 373 (1052)
..+... ....|..+.-+|++..+++.-.| +.|.+-|...... ...+.. ........++|++ ++++.+.
T Consensus 120 ~~~~~~-~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~--g~~~~D~~~dpdg----ry~~va~~~ 192 (369)
T PF02239_consen 120 GMPVDG-PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV--GRFPHDGGFDPDG----RYFLVAANG 192 (369)
T ss_dssp EE-TTT-S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTS----SEEEEEEGG
T ss_pred cccccc-cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc--cccccccccCccc----ceeeecccc
Confidence 222111 34578889899999877777665 6666667655432 223322 1234556788887 6655443
Q ss_pred --eeeEEecCCceEEEEec-C---CcccEEEEeccceeeeeccCCceeeeEeeecCceEEEEecCCc----chheeeeec
Q 001567 374 --SMMQWDEYGYRLYAIEE-G---SSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT----DELKILHLN 443 (1052)
Q Consensus 374 --~~~~W~~~~~~l~~~~~-~---~~~~v~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~----~~~~w~~~~ 443 (1052)
.+.+++.+++++..... + |..++..+.-- +.-.+|............-+.+. +...|+.++
T Consensus 193 sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php---------~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~ 263 (369)
T PF02239_consen 193 SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHP---------GFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK 263 (369)
T ss_dssp GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEET---------TTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred cceeEEEeeccceEEEEeeccccccccccccccCC---------CcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence 77788988887765542 1 22233322210 01122333222222111111111 123455543
Q ss_pred cCcccccCCCcEEEEEEccCCCEEEEE---e-CCceE-EEEccCCcEEEecCccceeeeEEEEEEEe--CCEEEEEEEec
Q 001567 444 LPVSYISQNWPVQHVAASKDGMFLAVA---G-LHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYID 516 (1052)
Q Consensus 444 ~p~~~~~h~~~V~~va~SpdG~~lava---g-~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~--~~~li~~~~~~ 516 (1052)
.. .....+ ..+..+||++++.+. + ..+.+ ++|.++.+- ...........+.++.|. |+.+.++.+..
T Consensus 264 ~I---~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~--~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 264 TI---PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV--VKTITPGPGKRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp EE---E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE--EE-HHHHHT--EEEEEE-TTSSEEEEEEE--
T ss_pred EE---ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcce--eEEEeccCCCcEeccEECCCCCEEEEEEecC
Confidence 22 223445 678889999999999 4 44778 999988632 111111111225567775 56777665643
Q ss_pred CCCeEEEEEeeCCC
Q 001567 517 SSNTYELLFYPRYH 530 (1052)
Q Consensus 517 ~~~~~elrly~~~~ 530 (1052)
.+ +|.+|+...
T Consensus 338 ~~---~i~v~D~~T 348 (369)
T PF02239_consen 338 NG---AIVVYDAKT 348 (369)
T ss_dssp TT---EEEEEETTT
T ss_pred CC---EEEEEECCC
Confidence 22 899998863
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=8.1e-07 Score=105.06 Aligned_cols=205 Identities=15% Similarity=0.143 Sum_probs=120.8
Q ss_pred ceeeeeeccc--ceecCCCCeE-EEEEcCCCCEEEEEeeC---CeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEE
Q 001567 241 GLKLAEFIKI--DKELGSGDAV-CASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA 314 (1052)
Q Consensus 241 ~i~~w~~~~~--~~~~gh~~~v-~va~spd~~~lAsgs~D---g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~ 314 (1052)
++.+||.... ..+..+...+ +.+|+|||+.||..+.+ ..|.+|++.+ +.. ..+.. +.+...+.+
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~-~~l~~--------~~g~~~~~~ 254 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQR-ELVAS--------FRGINGAPS 254 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCE-EEecc--------CCCCccCce
Confidence 3555654322 2234555667 99999999999988743 4699999976 443 23333 455566899
Q ss_pred ECCCCCEEE-EEEcCC--cEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee------eeeEEecCCceE
Q 001567 315 WTPDNSAFA-VGWKSR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRL 385 (1052)
Q Consensus 315 ~SpDg~~La-sg~~Dg--~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l 385 (1052)
|||||+.|+ +.+.+| .|.+||+.++... .+..+ .....++.|+|++ ..++..+ .+..++..+++.
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~-~~~~~~~~~spDG----~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNH-FGIDTEPTWAPDG----KSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccC-CCCccceEECCCC----CEEEEEECCCCCceEEEEECCCCCe
Confidence 999999776 445555 4999999887643 34433 3345678999998 5554332 355556655544
Q ss_pred EEE-ecCCcccEEEEec-cceeeeeccCC---ceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEE
Q 001567 386 YAI-EEGSSERVLIFSF-GKCCLNRGVSG---MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA 460 (1052)
Q Consensus 386 ~~~-~~~~~~~v~~~s~-~k~~~s~s~d~---~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~ 460 (1052)
-.. ..++...-..+++ ++.++..+.++ .+.+|++..+..+ .+ .+.......+|
T Consensus 329 ~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~---------------------~L-t~~~~~~~p~~ 386 (433)
T PRK04922 329 ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR---------------------TL-TPGSLDESPSF 386 (433)
T ss_pred EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE---------------------EC-CCCCCCCCceE
Confidence 322 2222222245666 66665443322 3555554333221 11 11112345689
Q ss_pred ccCCCEEEEEeCC---ceE-EEEccCC
Q 001567 461 SKDGMFLAVAGLH---GLI-LYDIRQK 483 (1052)
Q Consensus 461 SpdG~~lavag~d---G~i-lwd~~s~ 483 (1052)
||||++++.++.+ +.+ ++++.++
T Consensus 387 spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 387 APNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCCCEEEEEEecCCceEEEEEECCCC
Confidence 9999998877764 234 6666543
No 230
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=8.9e-08 Score=106.75 Aligned_cols=118 Identities=18% Similarity=0.263 Sum_probs=98.8
Q ss_pred cccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee----cCCCCeE-EEEEcC--CCCEEEEEe
Q 001567 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAP--EQQILAVGT 275 (1052)
Q Consensus 203 ~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~----~gh~~~v-~va~sp--d~~~lAsgs 275 (1052)
.+.+|.+.|.+++| +.||.++++|++|..+.+||....+.+ .||..-| |+.|-| ..+++++|.
T Consensus 45 eL~GH~GCVN~LeW----------n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEW----------NADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred hhccccceecceee----------cCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc
Confidence 35678889998887 789999999999999999998755543 7999999 999998 468899999
Q ss_pred eCCeEEEEecCCCC---------ceeEEEEeecCCCCCCCCCCeeEEEECCCC-CEEEEEEcCCcEEEEEcCC
Q 001567 276 RRGVVELYDLAESA---------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSG 338 (1052)
Q Consensus 276 ~Dg~V~vwd~~~~~---------~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg-~~Lasg~~Dg~v~vWd~~~ 338 (1052)
.|..|++||++... ..++.+.- |+..|..++-.|+| ..+-++++||+++-+|+..
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~c--------ht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSC--------HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhh--------hhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 99999999997411 12223333 99999999999999 8999999999999999965
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=5.9e-07 Score=105.93 Aligned_cols=183 Identities=19% Similarity=0.222 Sum_probs=109.1
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeC---CeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEE-EEEcC
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKS 328 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~D---g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~La-sg~~D 328 (1052)
..+...+ +.+|||||+.||..+.+ ..|.+||+.+ ++.. .+.. ..+.+.+.+|||||+.|+ +.+.+
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~~-~l~~--------~~g~~~~~~~SPDG~~la~~~~~~ 261 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRRR-VVAN--------FKGSNSAPAWSPDGRTLAVALSRD 261 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCEE-Eeec--------CCCCccceEECCCCCEEEEEEccC
Confidence 4556677 99999999999987743 3699999976 5433 2332 346677899999999887 46777
Q ss_pred CcEEEEEc--CCCeEEEEecccccCceeeeeEcCCCCCCccceeeee----eeeEE--ecCCceEEEE-ecCCcccEEEE
Q 001567 329 RGLTVWSV--SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQW--DEYGYRLYAI-EEGSSERVLIF 399 (1052)
Q Consensus 329 g~v~vWd~--~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~~~~W--~~~~~~l~~~-~~~~~~~v~~~ 399 (1052)
+...||.+ .++. ...+..+ .....++.|+|++ +.++..+ ...+| +.+++..-.. ..+....-..+
T Consensus 262 g~~~Iy~~d~~~~~-~~~lt~~-~~~~~~~~wSpDG----~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~ 335 (427)
T PRK02889 262 GNSQIYTVNADGSG-LRRLTQS-SGIDTEPFFSPDG----RSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRI 335 (427)
T ss_pred CCceEEEEECCCCC-cEECCCC-CCCCcCeEEcCCC----CEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEE
Confidence 87777754 4443 3444433 3445678899998 5544222 23344 3344433222 22211111456
Q ss_pred ec-cceeeeeccCC---ceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCc
Q 001567 400 SF-GKCCLNRGVSG---MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (1052)
Q Consensus 400 s~-~k~~~s~s~d~---~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG 474 (1052)
++ ++.++..+.++ .+.+|++..+..+. +..+ ......+|+|||++|+.++.++
T Consensus 336 SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~---------------------lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 336 SPDGKLLAYISRVGGAFKLYVQDLATGQVTA---------------------LTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CCCCCEEEEEEccCCcEEEEEEECCCCCeEE---------------------ccCC-CCccCceECCCCCEEEEEEecC
Confidence 66 67666544433 35555554333211 1111 1235679999999999887654
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.72 E-value=9.4e-07 Score=104.65 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=95.9
Q ss_pred eEEEEeeCCcEEEEEec---CCceeeeeecccce--ecCCCCeE-EEEEcCCCCEEEE-EeeCCe--EEEEecCCCCcee
Q 001567 222 LLFVLYSNGQLMSCSVS---KKGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAV-GTRRGV--VELYDLAESASLI 292 (1052)
Q Consensus 222 ~~~~~s~dG~~~~~~~~---d~~i~~w~~~~~~~--~~gh~~~v-~va~spd~~~lAs-gs~Dg~--V~vwd~~~~~~~~ 292 (1052)
....++|||+.++..+. +..+.+|+...++. +..+.+.+ +.+|||||+.||. .+.+|. |.+||+++ +. .
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~-~~-~ 282 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS-GT-T 282 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC-Cc-e
Confidence 34567899997777653 35688888766543 23455566 8899999998764 455665 55667654 33 3
Q ss_pred EEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC-C--cEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccce
Q 001567 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (1052)
Q Consensus 293 ~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D-g--~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l 369 (1052)
..+.. +.+...+.+|||||+.|+..+.. | .|.+||+.++.... +..+ ...+..+.|+|++ +.+
T Consensus 283 ~~Lt~--------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~-~~~~~~~~~SpdG----~~i 348 (435)
T PRK05137 283 TRLTD--------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFG-GGRYSTPVWSPRG----DLI 348 (435)
T ss_pred EEccC--------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecC-CCcccCeEECCCC----CEE
Confidence 44443 56667789999999998887743 3 47788887765433 3222 2346678899998 554
Q ss_pred eeee------eeeEEecCCce
Q 001567 370 MSGT------SMMQWDEYGYR 384 (1052)
Q Consensus 370 ~sg~------~~~~W~~~~~~ 384 (1052)
+-.. .+.+|+..++.
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred EEEEcCCCceEEEEEECCCCc
Confidence 4221 46667765554
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=6.7e-06 Score=93.05 Aligned_cols=145 Identities=19% Similarity=0.258 Sum_probs=99.5
Q ss_pred CCeEEEEEcCCCCE-EEEEe--eCC---------eEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEE
Q 001567 257 GDAVCASIAPEQQI-LAVGT--RRG---------VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (1052)
Q Consensus 257 ~~~v~va~spd~~~-lAsgs--~Dg---------~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Las 324 (1052)
.+.|.+.||+.|.- |+.++ -|. ++.+.+++. .. ..+.+ ...|+|.++.|+|+|+-+++
T Consensus 218 adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~s--~~V~L-------~k~GPVhdv~W~~s~~EF~V 287 (566)
T KOG2315|consen 218 ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-ES--VSVPL-------LKEGPVHDVTWSPSGREFAV 287 (566)
T ss_pred cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC-ce--EEEec-------CCCCCceEEEECCCCCEEEE
Confidence 46678889988763 33333 233 344555441 11 12222 14899999999999987777
Q ss_pred E--EcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee------eeeEEecCCceEEEEecCCcccE
Q 001567 325 G--WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSSERV 396 (1052)
Q Consensus 325 g--~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~~~~~~~~v 396 (1052)
. ..=..+.|+|+.+.. +..+. .++-+.+.|+|.| ..++-++ .+-+||..+.+++.........+
T Consensus 288 vyGfMPAkvtifnlr~~~-v~df~---egpRN~~~fnp~g----~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~ 359 (566)
T KOG2315|consen 288 VYGFMPAKVTIFNLRGKP-VFDFP---EGPRNTAFFNPHG----NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV 359 (566)
T ss_pred EEecccceEEEEcCCCCE-eEeCC---CCCccceEECCCC----CEEEEeecCCCCCceEEEeccchhhccccccCCceE
Confidence 5 445789999998764 44443 3445778899998 6554333 78899999999998887777788
Q ss_pred EEEec-cceeeeecc------CCceeeeEe
Q 001567 397 LIFSF-GKCCLNRGV------SGMTYARQV 419 (1052)
Q Consensus 397 ~~~s~-~k~~~s~s~------d~~v~~w~~ 419 (1052)
..+++ |..++|+.. |+.+++|++
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 89999 888876653 566777774
No 234
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.72 E-value=4e-06 Score=96.21 Aligned_cols=283 Identities=12% Similarity=0.074 Sum_probs=144.9
Q ss_pred EEEeeCCeEEEEE-cCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEe-CCcEEEEEEEEecCce
Q 001567 25 IYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEKS 102 (1052)
Q Consensus 25 v~fSpdg~llA~~-sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t-~dg~l~i~~l~~~~~~ 102 (1052)
+.|||||+++.++ .|+.|.++|.. ....+...+-. +.-..+++||||++++++. ..+.+.++|.++.+..
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~-~~~~v~~i~~G-------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLA-TGKVVATIKVG-------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETT-SSSEEEEEE-S-------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred EEecCCCCEEEEEcCCCeEEEEECC-cccEEEEEecC-------CCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 6799999976666 48899999996 55445544321 2235899999999999876 5789999997644321
Q ss_pred eecCCCCCCCceeeeEeeeeccccccccccceEEEE--eecCCeEEEEecC-CcEEEEeccCccccceeecccCCCCccc
Q 001567 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSD-GSLYSISWKGEFYGAFELVHSSNDSSVA 179 (1052)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~d~~~llv~t~d-g~v~~~~wd~~~~~~~~l~~~~~~~~~i 179 (1052)
..+. ...........++.++ ++.+..++++..+ +.+.+++..........
T Consensus 114 ~~I~----------------~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~----------- 166 (369)
T PF02239_consen 114 KTIP----------------TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT----------- 166 (369)
T ss_dssp EEEE------------------EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE-----------
T ss_pred eecc----------------cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee-----------
Confidence 1110 0000011122344454 3455667777775 67766554432111000
Q ss_pred eeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEec-CCceeeeeeccccee-----
Q 001567 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE----- 253 (1052)
Q Consensus 180 ~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-d~~i~~w~~~~~~~~----- 253 (1052)
. ........+ ..++|||++++.+.. ...+-++|..+.+..
T Consensus 167 -~-----------------------i~~g~~~~D----------~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 167 -T-----------------------IKVGRFPHD----------GGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp -E-----------------------EE--TTEEE----------EEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred -e-----------------------ecccccccc----------cccCcccceeeecccccceeEEEeeccceEEEEeec
Confidence 0 001111222 345677776655432 333444444333211
Q ss_pred --cCCCCeE-E---------EEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCE
Q 001567 254 --LGSGDAV-C---------ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA 321 (1052)
Q Consensus 254 --~gh~~~v-~---------va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~ 321 (1052)
..|.... . -+.+..+....+.-....+.+|+... .+.++++.. ..++ .-++-+||+++
T Consensus 213 g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~-wkvv~~I~~--------~G~g-lFi~thP~s~~ 282 (369)
T PF02239_consen 213 GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA-WKVVKTIPT--------QGGG-LFIKTHPDSRY 282 (369)
T ss_dssp SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB-TSEEEEEE---------SSSS---EE--TT-SE
T ss_pred cccccccccccccCCCcceEEeeccccceecccccCCccccchhhc-CeEEEEEEC--------CCCc-ceeecCCCCcc
Confidence 1122222 1 11223333332333334566788776 778888886 4455 88888999999
Q ss_pred EEEE----EcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee----eeeEEecCCceEEEEe
Q 001567 322 FAVG----WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIE 389 (1052)
Q Consensus 322 Lasg----~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~ 389 (1052)
+.+. ...++|.|+|..+.+...++.......+..+.|+++|. +.++|.- .+.++|..+.++....
T Consensus 283 vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~---~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 283 VWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGK---EVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSS---EEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCC---EEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 9998 44589999999998888887643223478889999982 3333321 4566666666655543
No 235
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.71 E-value=2.2e-08 Score=109.84 Aligned_cols=218 Identities=14% Similarity=0.160 Sum_probs=164.0
Q ss_pred eEEEEeeCCcEEEEEecCCceeeeeeccccee--cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEee
Q 001567 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1052)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~ 298 (1052)
+.+-.+.+|+.++.++..|-+-..|..+.... ......| .+.|-++.+++|++- ..-+.|||-. |..++.++.
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~--GtElHClk~- 208 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN--GTELHCLKR- 208 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh-hceEEEecCC--CcEEeehhh-
Confidence 44566899999999999988887776655332 3345667 889999999999964 5578999854 667787775
Q ss_pred cCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeee---eee
Q 001567 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG---TSM 375 (1052)
Q Consensus 299 ~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg---~~~ 375 (1052)
...|..+.|-|---+||++++.|.++--|+..|+++..++.. .+.+....-.|.. ..+-.| +++
T Consensus 209 --------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-~G~~~vm~qNP~N----aVih~GhsnGtV 275 (545)
T KOG1272|consen 209 --------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-AGRTDVMKQNPYN----AVIHLGHSNGTV 275 (545)
T ss_pred --------cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-CCccchhhcCCcc----ceEEEcCCCceE
Confidence 567999999999999999999999999999999998887754 4555555555654 344333 289
Q ss_pred eEEecCCceEEEEecCCcccE--EEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCC
Q 001567 376 MQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (1052)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~ 452 (1052)
-+|++...+.++.+-.|.+.| ++++. |++++|.+.|..+++||+..-.. +.++.. .
T Consensus 276 SlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q--------------------l~t~~t-p 334 (545)
T KOG1272|consen 276 SLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ--------------------LHTYRT-P 334 (545)
T ss_pred EecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc--------------------cceeec-C
Confidence 999999988888878888888 66666 99999999999999999876553 333332 3
Q ss_pred CcEEEEEEccCCCEEEEEeCCceE-EEE
Q 001567 453 WPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (1052)
Q Consensus 453 ~~V~~va~SpdG~~lavag~dG~i-lwd 479 (1052)
-+...++||.-| .||.+ ....+ +|.
T Consensus 335 ~~a~~ls~Sqkg-lLA~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 335 HPASNLSLSQKG-LLALS-YGDHVQIWK 360 (545)
T ss_pred CCcccccccccc-ceeee-cCCeeeeeh
Confidence 467779999666 34433 33345 774
No 236
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.68 E-value=3.2e-06 Score=88.89 Aligned_cols=70 Identities=23% Similarity=0.339 Sum_probs=50.2
Q ss_pred EEEeeCCeEEEEEcCCcEEEeecCCce--eEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEe
Q 001567 25 IYFKVNNGLLLIASPCHIELWSSSQHK--VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (1052)
Q Consensus 25 v~fSpdg~llA~~sd~~v~IW~~~~~~--~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~ 98 (1052)
++.+.||++||++.|..|.|=..+ .. ..+++..-..+ .+-.-..++||||+..||.+.+.|+|++||+..
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~-Ddf~si~~kcqVpkD---~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAK-DDFSSIIGKCQVPKD---PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEecc-CCchheeEEEecCCC---CCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 346799999999999999997664 22 11222211111 112235899999999999999999999999874
No 237
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=3.7e-06 Score=99.60 Aligned_cols=123 Identities=14% Similarity=0.188 Sum_probs=68.2
Q ss_pred EEeeCCcEEEEEec-CCceeee--eecccce--ecCCCCeE-EEEEcCCCCEEEEEeeC-CeEEE--EecCCCCceeEEE
Q 001567 225 VLYSNGQLMSCSVS-KKGLKLA--EFIKIDK--ELGSGDAV-CASIAPEQQILAVGTRR-GVVEL--YDLAESASLIRTV 295 (1052)
Q Consensus 225 ~~s~dG~~~~~~~~-d~~i~~w--~~~~~~~--~~gh~~~v-~va~spd~~~lAsgs~D-g~V~v--wd~~~~~~~~~~l 295 (1052)
.++|||+.++..+. ++...+| +...++. +....... ..+|+|||+.|+..+.+ +..+| +|+++ +. ...+
T Consensus 312 ~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~l 389 (448)
T PRK04792 312 SWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVL 389 (448)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEc
Confidence 45788887766554 3333444 4333321 11112222 57899999999886653 44445 55554 33 3333
Q ss_pred EeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCc---EEEEEcCCCeEEEEecccccCceeeeeEcC
Q 001567 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG---LTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (1052)
Q Consensus 296 ~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~---v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp 360 (1052)
.. . ......+|+|||+.|+..+.+++ +.+++..|. ....+..+ ...+..++|+|
T Consensus 390 t~--------~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~-~~~~l~~~-~g~~~~p~Wsp 446 (448)
T PRK04792 390 TS--------T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR-FKARLPAG-QGEVKSPAWSP 446 (448)
T ss_pred cC--------C-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCC-CCCcCCCccCC
Confidence 22 1 11223479999998887665433 667777654 34445433 34456666666
No 238
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.66 E-value=3.1e-06 Score=96.39 Aligned_cols=161 Identities=16% Similarity=0.121 Sum_probs=128.6
Q ss_pred CCcEEEEEecCCceeeeeecccceec-----CCC--CeEEEEEc--------------------CCCCEEEEEeeCCeEE
Q 001567 229 NGQLMSCSVSKKGLKLAEFIKIDKEL-----GSG--DAVCASIA--------------------PEQQILAVGTRRGVVE 281 (1052)
Q Consensus 229 dG~~~~~~~~d~~i~~w~~~~~~~~~-----gh~--~~v~va~s--------------------pd~~~lAsgs~Dg~V~ 281 (1052)
-+.+++....|+.+++|+....+..+ .|. ..++..|. .|-..+|-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 34556666677778888877654331 111 12233332 2345788999999999
Q ss_pred EEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCC
Q 001567 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (1052)
Q Consensus 282 vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~ 361 (1052)
+|++.. ++...++... .|.|+|+++.|+.+-.+|-|++.|+.+..|+...+..+|...+. ...+.++.++||
T Consensus 84 ~ys~~~-g~it~~~st~------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-~~~~~sl~is~D 155 (541)
T KOG4547|consen 84 LYSVAG-GEITAKLSTD------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-KPLVSSLCISPD 155 (541)
T ss_pred EEEecC-CeEEEEEecC------CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-CCccceEEEcCC
Confidence 999987 7777777642 39999999999999999999999999999999999999988876 678999999999
Q ss_pred CCCCccceeeee-eeeEEecCCceEEEEecCCcccEEEEec
Q 001567 362 QDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLIFSF 401 (1052)
Q Consensus 362 ~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~~~~~~v~~~s~ 401 (1052)
+ ..+++++ ++++|+.++.+++..+.||.+.|-.++|
T Consensus 156 ~----~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 156 G----KILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred C----CEEEeccceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 8 8888877 9999999999999999999999977766
No 239
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.64 E-value=2.7e-05 Score=82.58 Aligned_cols=226 Identities=14% Similarity=0.161 Sum_probs=134.3
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCC--eeEEEECCCCCEEEEEEcC------CcEE
Q 001567 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP--VSCIAWTPDNSAFAVGWKS------RGLT 332 (1052)
Q Consensus 261 ~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~--V~~l~~SpDg~~Lasg~~D------g~v~ 332 (1052)
.++||.|..-+|+|..+| .|||+.+. -+....... +.+. +..+-|-. +.+..+|+.+ ..|.
T Consensus 10 svs~NQD~ScFava~~~G-friyn~~P-~ke~~~r~~--------~~~G~~~veMLfR~-N~laLVGGg~~pky~pNkvi 78 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVATDTG-FRIYNCDP-FKESASRQF--------IDGGFKIVEMLFRS-NYLALVGGGSRPKYPPNKVI 78 (346)
T ss_pred EEEEccCCceEEEEecCc-eEEEecCc-hhhhhhhcc--------ccCchhhhhHhhhh-ceEEEecCCCCCCCCCceEE
Confidence 799999999999999887 79999875 221111111 2222 22233332 2233344433 4799
Q ss_pred EEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeeeeeeEEecC-CceEEEEec--CCcccEEEEec--cceee-
Q 001567 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEY-GYRLYAIEE--GSSERVLIFSF--GKCCL- 406 (1052)
Q Consensus 333 vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~-~~~l~~~~~--~~~~~v~~~s~--~k~~~- 406 (1052)
|||=...+++.++.- ..+|.++.++++. -.++--..+.+|... .-+++.... .+..++.++.+ .+.++
T Consensus 79 IWDD~k~~~i~el~f--~~~I~~V~l~r~r----iVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~La 152 (346)
T KOG2111|consen 79 IWDDLKERCIIELSF--NSEIKAVKLRRDR----IVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLA 152 (346)
T ss_pred EEecccCcEEEEEEe--ccceeeEEEcCCe----EEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEE
Confidence 999766777777764 4789999998874 222322378888765 344444332 12334555555 33222
Q ss_pred -eeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE--EEEccCC
Q 001567 407 -NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQK 483 (1052)
Q Consensus 407 -s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i--lwd~~s~ 483 (1052)
-|-..|.+++-++....- .-|....+|..+|.+++++.+|..+|+||..|++ +||..+|
T Consensus 153 fPg~k~GqvQi~dL~~~~~------------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g 214 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKP------------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG 214 (346)
T ss_pred cCCCccceEEEEEhhhcCc------------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC
Confidence 122345555555433221 2356777999999999999999999999999997 9999988
Q ss_pred cE-EEecCccceeeeEEEEEEEeCC--EEEEEEEecCCCeEEEEEeeC
Q 001567 484 KW-RVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPR 528 (1052)
Q Consensus 484 ~w-~~f~~~~~e~~~~v~gl~W~~~--~li~~~~~~~~~~~elrly~~ 528 (1052)
.- ..|....+..+ +-.+....+ .+.++ +....|.+|..
T Consensus 215 ~~l~E~RRG~d~A~--iy~iaFSp~~s~Lavs-----SdKgTlHiF~l 255 (346)
T KOG2111|consen 215 TLLQELRRGVDRAD--IYCIAFSPNSSWLAVS-----SDKGTLHIFSL 255 (346)
T ss_pred cEeeeeecCCchhe--EEEEEeCCCccEEEEE-----cCCCeEEEEEe
Confidence 63 33433333222 334555444 44443 23344555544
No 240
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.62 E-value=1.2e-05 Score=90.28 Aligned_cols=77 Identities=10% Similarity=0.118 Sum_probs=61.2
Q ss_pred EEEEcCCCCEEEEEe----------eCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCC-EEEEEE-cC
Q 001567 261 CASIAPEQQILAVGT----------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW-KS 328 (1052)
Q Consensus 261 ~va~spd~~~lAsgs----------~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~-~Lasg~-~D 328 (1052)
-++++|+++.+.+.. ..+.|.++|..+ .+.+..+.. ...+..+++||||+ .|.+.. .+
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v---------G~~~~~iavS~Dgkp~lyvtn~~s 321 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL---------GHEIDSINVSQDAKPLLYALSTGD 321 (352)
T ss_pred eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC---------CCceeeEEECCCCCeEEEEeCCCC
Confidence 499999999887743 124799999887 777776664 34689999999999 888776 56
Q ss_pred CcEEEEEcCCCeEEEEecc
Q 001567 329 RGLTVWSVSGCRLMSTIRQ 347 (1052)
Q Consensus 329 g~v~vWd~~~~~l~~tl~~ 347 (1052)
+.|.|.|+.+++.+.++.+
T Consensus 322 ~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 322 KTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred CcEEEEECcCCeEEeeecc
Confidence 8899999999998888743
No 241
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=3e-05 Score=90.42 Aligned_cols=272 Identities=18% Similarity=0.185 Sum_probs=143.8
Q ss_pred EEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCC--EEEEEEcCCcEEEEEcCCC
Q 001567 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGC 339 (1052)
Q Consensus 262 va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~--~Lasg~~Dg~v~vWd~~~~ 339 (1052)
.+|+|..+-+....-...+.|+|++- ..++.+... ..|.+.-+.|-||++ .|..+-.||.+.+|-....
T Consensus 236 faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpi--------er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 236 FAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPI--------ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE 306 (1062)
T ss_pred hhcChhhhceEEEEeccceEEEcchh-hceeEEEEe--------ccCCcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence 37899888877778888999999986 666766666 678889999999986 7888999999999965431
Q ss_pred e-------------------EEEEecccccCceeeeeEcCCCCCCccceeeeeeeeEEecCCceEEEEecC-CcccEEEE
Q 001567 340 R-------------------LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEG-SSERVLIF 399 (1052)
Q Consensus 340 ~-------------------l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~-~~~~v~~~ 399 (1052)
. +++..+.. ....-+..|..++....+.+.+...+|...++++-..... ..+-+.-|
T Consensus 307 ~~~f~~~~~~l~~dl~~Q~~~vr~m~~~---rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf 383 (1062)
T KOG1912|consen 307 PTEFKKPNASLSMDLGEQVHVVRPMEEF---RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPF 383 (1062)
T ss_pred CccccccchhhccccccceEEEeechhc---ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccc
Confidence 1 11222111 1111122233211223455555778898876655332221 11122344
Q ss_pred eccc--------eeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccc-----cCCCcEEEEEEccCCCE
Q 001567 400 SFGK--------CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-----SQNWPVQHVAASKDGMF 466 (1052)
Q Consensus 400 s~~k--------~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~-----~h~~~V~~va~SpdG~~ 466 (1052)
+|.. .+.+-|.||... .|. ... ..+ ..|.--+ +.|.|- . .-..
T Consensus 384 ~f~~~~~~v~k~~l~~LS~dg~h~-----sGs---~~~--------~~~--p~p~~t~~~~~p~~n~~~--~----~~pL 439 (1062)
T KOG1912|consen 384 DFNLSTKLVGKTSLISLSDDGSHS-----SGS---TCV--------RMR--PMPELTKVENDPGGNTPA--G----TVPL 439 (1062)
T ss_pred cccCceeehhhccccchhhcCCCC-----CCc---eee--------ecc--cCcccceeecCCCCCccc--e----eeee
Confidence 4411 112222232100 000 000 000 0111000 111111 0 1147
Q ss_pred EEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeCCE-EEEEEEecCCC---e--EEEEEeeCC-CCCCcceeE
Q 001567 467 LAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKI-IVVCNYIDSSN---T--YELLFYPRY-HLDQSSLLC 538 (1052)
Q Consensus 467 lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~~~~-li~~~~~~~~~---~--~elrly~~~-~ld~~~~l~ 538 (1052)
+|+|+..|++ ++|+.++... ....-+.-.|.|+.|.++. +++.+|+.-.+ . .++.+-..- .+...+-..
T Consensus 440 vAvGT~sGTV~vvdvst~~v~---~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l 516 (1062)
T KOG1912|consen 440 VAVGTNSGTVDVVDVSTNAVA---ASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGL 516 (1062)
T ss_pred EEeecCCceEEEEEecchhhh---hhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccC
Confidence 8999999999 9999886421 1111222347899999875 45555543221 1 122222221 222221111
Q ss_pred EeecCCc--cEEEEeeCCEEEEEEcCCeEEEEEEEE
Q 001567 539 RKSLLAK--PIVMDVYEDYILVTYRPFDVHIFHVKL 572 (1052)
Q Consensus 539 ~~~~~~~--~~~~s~~~~~llv~~~d~~i~l~~~~~ 572 (1052)
..+-.++ .+-.+..+.|+++.+.+.-+.+|+++.
T Consensus 517 ~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 517 QKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred CCCCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 1111122 234577889999999999999999864
No 242
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.59 E-value=3.2e-05 Score=86.68 Aligned_cols=171 Identities=16% Similarity=0.164 Sum_probs=101.2
Q ss_pred CeEEEEEcCCCCEEEEEee-----------CCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEE-
Q 001567 258 DAVCASIAPEQQILAVGTR-----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG- 325 (1052)
Q Consensus 258 ~~v~va~spd~~~lAsgs~-----------Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg- 325 (1052)
+.+.+-|++.|.+|.+-.. ..++.|+++.. ..++.. .+-.++|...+|+|+++.+++.
T Consensus 224 ~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~--------~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 224 SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVE--------KDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--ccccee--------ccccccceeeeecccCCceeEEe
Confidence 4456677777776654221 12344555432 222222 1258999999999999877664
Q ss_pred -EcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee------eeeEEecCCceEEE-EecCCcccEE
Q 001567 326 -WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYA-IEEGSSERVL 397 (1052)
Q Consensus 326 -~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~-~~~~~~~~v~ 397 (1052)
..+..+.++++.+. +...+... .-+.+.|+|.+ ..++... .+.+|++.+.-... ...+......
T Consensus 294 g~~pa~~s~~~lr~N-l~~~~Pe~---~rNT~~fsp~~----r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~ 365 (561)
T COG5354 294 GYMPASVSVFDLRGN-LRFYFPEQ---KRNTIFFSPHE----RYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYC 365 (561)
T ss_pred cccccceeecccccc-eEEecCCc---ccccccccCcc----cEEEEecCCccccceEEeccCCceEEEEEeecCCceEe
Confidence 57789999999987 44444432 23456678876 4444322 77889887665544 4555455556
Q ss_pred EEec-cceeeee------ccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEE
Q 001567 398 IFSF-GKCCLNR------GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA 470 (1052)
Q Consensus 398 ~~s~-~k~~~s~------s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lava 470 (1052)
.+++ +....+. ..|..+++|++....- + ....+.|.|.|++.-+.
T Consensus 366 ~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~-----------------------f-----el~~~~W~p~~~~~tts 417 (561)
T COG5354 366 DWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV-----------------------F-----ELTNITWDPSGQYVTTS 417 (561)
T ss_pred eccCCceEEEecCCCcccccCcceEEEEecCchh-----------------------h-----hhhhccccCCcccceee
Confidence 6666 3333221 2466777777532211 1 34457788888887766
Q ss_pred eCCc
Q 001567 471 GLHG 474 (1052)
Q Consensus 471 g~dG 474 (1052)
+.++
T Consensus 418 Ss~~ 421 (561)
T COG5354 418 SSCP 421 (561)
T ss_pred ccCC
Confidence 6544
No 243
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.59 E-value=1.1e-06 Score=99.87 Aligned_cols=96 Identities=15% Similarity=-0.013 Sum_probs=84.8
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~ 332 (1052)
.+|.+.| ++.++.+-..|-+++.|+.|..|+..+ ...++.++. .+..+.+++.+|||..|++|+ +.|+
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~--------~~~~~~sl~is~D~~~l~~as--~~ik 167 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWKE--------QKPLVSSLCISPDGKILLTAS--RQIK 167 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeecc--------CCCccceEEEcCCCCEEEecc--ceEE
Confidence 3688888 888899999999999999999999987 788888877 677899999999999999998 5999
Q ss_pred EEEcCCCeEEEEecccccCceeeeeEcCC
Q 001567 333 VWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (1052)
Q Consensus 333 vWd~~~~~l~~tl~~~~~~~v~s~~~sp~ 361 (1052)
+|+..+++.+.++.|| .+.|+++.|--+
T Consensus 168 ~~~~~~kevv~~ftgh-~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 168 VLDIETKEVVITFTGH-GSPVRTLSFTTL 195 (541)
T ss_pred EEEccCceEEEEecCC-CcceEEEEEEEe
Confidence 9999999999999999 677888777443
No 244
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=5.1e-07 Score=99.92 Aligned_cols=288 Identities=12% Similarity=0.144 Sum_probs=173.0
Q ss_pred hcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCceee-cCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCe
Q 001567 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ-IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKH 144 (1052)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~ 144 (1052)
+.|-+..|.|-..|..|++++.|..+.+||-.....++- ..+|.... .....++. ++...
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~Nv--------fQaKFiP~-----------s~d~t 201 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNV--------FQAKFIPF-----------SGDRT 201 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccch--------hhhhccCC-----------CCCcC
Confidence 458888999999999999999999999999987665432 23442210 00000111 12234
Q ss_pred EEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEE
Q 001567 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (1052)
Q Consensus 145 llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 224 (1052)
++.++.||.++.-........... .-+..+...|..++.
T Consensus 202 i~~~s~dgqvr~s~i~~t~~~e~t---------------------------------~rl~~h~g~vhklav-------- 240 (559)
T KOG1334|consen 202 IVTSSRDGQVRVSEILETGYVENT---------------------------------KRLAPHEGPVHKLAV-------- 240 (559)
T ss_pred ceeccccCceeeeeeccccceecc---------------------------------eecccccCccceeee--------
Confidence 666777888876433321111100 011223333433332
Q ss_pred EEeeCC-cEEEEEecCCceeeeeecccc------eecCCCC---eE-EEEEcCCCC-EEEEEeeCCeEEEEecCCCCc--
Q 001567 225 VLYSNG-QLMSCSVSKKGLKLAEFIKID------KELGSGD---AV-CASIAPEQQ-ILAVGTRRGVVELYDLAESAS-- 290 (1052)
Q Consensus 225 ~~s~dG-~~~~~~~~d~~i~~w~~~~~~------~~~gh~~---~v-~va~spd~~-~lAsgs~Dg~V~vwd~~~~~~-- 290 (1052)
-|+. .-+.+++.|+.+.-.|..... +...+.. .. .++++|... .+|+|+.|.-+++||.....+
T Consensus 241 --~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~ 318 (559)
T KOG1334|consen 241 --EPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEE 318 (559)
T ss_pred --cCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcc
Confidence 2222 123344444444433332211 1122222 33 789999766 899999999999999764111
Q ss_pred ---eeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCC--C----------eEE-EEecccccC-ce
Q 001567 291 ---LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG--C----------RLM-STIRQISLS-SI 353 (1052)
Q Consensus 291 ---~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~--~----------~l~-~tl~~~~~~-~v 353 (1052)
.+.++-... ......-.|+|++||.+|.-|.++..|-.|.+++-.- | ... +..+||..+ .|
T Consensus 319 ~n~~~~~f~p~h--l~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TV 396 (559)
T KOG1334|consen 319 NNGVLDKFCPHH--LVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTV 396 (559)
T ss_pred ccchhhhcCCcc--ccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccc
Confidence 111111100 0002345689999999988888888888999995421 1 112 236676322 35
Q ss_pred eeeeE-cCCCCCCccceeeee---eeeEEecCCceEEEEecCCcccEEEEec---cceeeeeccCCceeeeEeee
Q 001567 354 SSPIV-KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIY 421 (1052)
Q Consensus 354 ~s~~~-sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~~~ 421 (1052)
..+-| -|.. ++++||+ .+.+|+-.+++++....+...-|-++.+ --.+++.+.|..|++|.-..
T Consensus 397 KgVNFfGPrs----EyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 397 KGVNFFGPRS----EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred ceeeeccCcc----ceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 55544 4555 8999998 8999999999999988886665677776 56788999999999998643
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.58 E-value=5e-07 Score=108.51 Aligned_cols=141 Identities=13% Similarity=0.123 Sum_probs=107.6
Q ss_pred EeeCCcEEEEEecCCceeeeeecc---cceecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeE-EEEeecC
Q 001567 226 LYSNGQLMSCSVSKKGLKLAEFIK---IDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIR-TVSLYDW 300 (1052)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~~---~~~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~-~l~~~~~ 300 (1052)
.+++--++++++--+.+-+|.... +....||.+.+ .+.++.||+++|+.|.|.++|+|++++ .+... +.-
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s-~~~~~~~~f---- 215 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS-REVLGCTGF---- 215 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccc-ccccCcccc----
Confidence 345555666666666777776542 12348999999 999999999999999999999999998 54333 222
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeE
Q 001567 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQ 377 (1052)
Q Consensus 301 ~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~ 377 (1052)
+|++.|..+.|.|+ .++|+++|.+.++|+..+..+. .+.+|--..+..++..++. ....+++ ++++
T Consensus 216 ----gHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~----~~~vT~g~Ds~lk~ 284 (967)
T KOG0974|consen 216 ----GHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGV----IIKVTGGNDSTLKL 284 (967)
T ss_pred ----cccceeEEEEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCc----eEEEeeccCcchhh
Confidence 39999999999998 9999999999999988876544 7777756678888887765 4455554 7777
Q ss_pred EecCC
Q 001567 378 WDEYG 382 (1052)
Q Consensus 378 W~~~~ 382 (1052)
|+..+
T Consensus 285 ~~l~~ 289 (967)
T KOG0974|consen 285 WDLNG 289 (967)
T ss_pred hhhhc
Confidence 77543
No 246
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=4.5e-06 Score=94.18 Aligned_cols=239 Identities=20% Similarity=0.173 Sum_probs=146.9
Q ss_pred CCCCeE-EEEEcCCCCE-EEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 001567 255 GSGDAV-CASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1052)
Q Consensus 255 gh~~~v-~va~spd~~~-lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~ 332 (1052)
++..+. .+.++|||++ +|+|..--.|++||+.. -.+ .+...- ....|.-.-.|-|-.-++---.|++|-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan-LSL--KFERhl------Dae~V~feiLsDD~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN-LSL--KFERHL------DAEVVDFEILSDDYSKSVFLQNDRTIE 119 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccc-cee--eeeecc------cccceeEEEeccchhhheEeecCceee
Confidence 555666 8999999997 68888888999999975 332 233200 244566666666766666667788887
Q ss_pred EEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeeeeeeEEecCCceEEEEecCCcccEEEEec---cceeeeec
Q 001567 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRG 409 (1052)
Q Consensus 333 vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s 409 (1052)
+-...|..--..+.-.+ ..+.++.-. |..-...+|..+.-.+.+.|+.+.-.......+.+++. -..++.|.
T Consensus 120 fHak~G~hy~~RIP~~G----RDm~y~~~s-cDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt 194 (703)
T KOG2321|consen 120 FHAKYGRHYRTRIPKFG----RDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGT 194 (703)
T ss_pred ehhhcCeeeeeecCcCC----ccccccCCC-ccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecc
Confidence 77665543222222111 111221111 11122233346666778888776665544456655444 45667777
Q ss_pred cCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCC-----CcEEEEEEccCCCEEEEEeCCceE-EEEccCC
Q 001567 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN-----WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (1052)
Q Consensus 410 ~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~-----~~V~~va~SpdG~~lavag~dG~i-lwd~~s~ 483 (1052)
.+|.+..||-......- .+.++.....|. -.|+++.|+.||-.+|+|+.+|.+ +||+.+.
T Consensus 195 ~~g~VEfwDpR~ksrv~--------------~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 195 EDGVVEFWDPRDKSRVG--------------TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred cCceEEEecchhhhhhe--------------eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 89999999965433211 111122211222 239999999999999999999999 9999987
Q ss_pred cEEEecCccceeeeEEEEEEEe----CCEEEEEEEecCCCeEEEEEeeCC
Q 001567 484 KWRVFGDITQEQKIQSKGLLWL----GKIIVVCNYIDSSNTYELLFYPRY 529 (1052)
Q Consensus 484 ~w~~f~~~~~e~~~~v~gl~W~----~~~li~~~~~~~~~~~elrly~~~ 529 (1052)
+=-...+ |..++.+..+.|. ++.++++ ...-+++|+..
T Consensus 261 ~pl~~kd--h~~e~pi~~l~~~~~~~q~~v~S~------Dk~~~kiWd~~ 302 (703)
T KOG2321|consen 261 KPLLVKD--HGYELPIKKLDWQDTDQQNKVVSM------DKRILKIWDEC 302 (703)
T ss_pred Cceeecc--cCCccceeeecccccCCCceEEec------chHHhhhcccc
Confidence 6433333 4444667788885 3455554 34668999884
No 247
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=8.4e-06 Score=95.88 Aligned_cols=127 Identities=10% Similarity=0.045 Sum_probs=79.5
Q ss_pred EEEeeCCcEEEEEec-CCceeeeeec----c--cceecCCCCeE-EEEEcCCCCEEEEEeeC---CeEEEEecCCCCcee
Q 001567 224 FVLYSNGQLMSCSVS-KKGLKLAEFI----K--IDKELGSGDAV-CASIAPEQQILAVGTRR---GVVELYDLAESASLI 292 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~-d~~i~~w~~~----~--~~~~~gh~~~v-~va~spd~~~lAsgs~D---g~V~vwd~~~~~~~~ 292 (1052)
..++|||+.++..+. ++..++|... . ...+..+...+ ..+|||||+.||..+.+ ..|.+||+++ ++.
T Consensus 286 p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~- 363 (428)
T PRK01029 286 PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD- 363 (428)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-
Confidence 356899987766553 4555566432 1 11223333455 88999999999877654 3689999876 443
Q ss_pred EEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEc---CCcEEEEEcCCCeEEEEecccccCceeeeeEcCCC
Q 001567 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK---SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1052)
Q Consensus 293 ~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~---Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (1052)
+.+.. ..+.+....|+|||+.|+.... ...+.+|++.++.......+ ...+..++|+|..
T Consensus 364 ~~Lt~--------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~--~g~~~~p~Ws~~~ 426 (428)
T PRK01029 364 YQLTT--------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG--SGEKRFPSWGAFP 426 (428)
T ss_pred EEccC--------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCcccCceecCCC
Confidence 33332 2345678999999998875443 24688889887764333322 2345667776653
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.56 E-value=1.1e-05 Score=95.14 Aligned_cols=183 Identities=18% Similarity=0.137 Sum_probs=107.8
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeC---CeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEE-EEcC
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWKS 328 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~D---g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Las-g~~D 328 (1052)
..+...+ ..+|+|||+.||.++.+ ..|.+|++.+ ++.. .+.. +.+.+.+++|+|||+.|+. .+.+
T Consensus 186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-g~~~-~~~~--------~~~~~~~~~~spDg~~l~~~~~~~ 255 (417)
T TIGR02800 186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-GQRE-KVAS--------FPGMNGAPAFSPDGSKLAVSLSKD 255 (417)
T ss_pred ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCC-CCEE-Eeec--------CCCCccceEECCCCCEEEEEECCC
Confidence 4555566 88999999999988754 4899999976 4432 2333 5667788999999997765 4444
Q ss_pred C--cEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee------eeeEEecCCceEEEEecC-CcccEEEE
Q 001567 329 R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEG-SSERVLIF 399 (1052)
Q Consensus 329 g--~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~~~~-~~~~v~~~ 399 (1052)
+ .|.+|++.++.. ..+..+ ......+.|+|++ +.++..+ .+..|+..+++....... ....-..+
T Consensus 256 ~~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~s~dg----~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~ 329 (417)
T TIGR02800 256 GNPDIYVMDLDGKQL-TRLTNG-PGIDTEPSWSPDG----KSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSW 329 (417)
T ss_pred CCccEEEEECCCCCE-EECCCC-CCCCCCEEECCCC----CEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEE
Confidence 4 588889887653 333333 2334577899987 5544222 455667666654333211 11111345
Q ss_pred ec-cceeeeeccCC---ceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCc
Q 001567 400 SF-GKCCLNRGVSG---MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (1052)
Q Consensus 400 s~-~k~~~s~s~d~---~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG 474 (1052)
++ ++.++..+.++ .+.++++..+..+ . +.. .......+|+|||++|+.++.++
T Consensus 330 spdg~~i~~~~~~~~~~~i~~~d~~~~~~~---------------~--l~~-----~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 330 SPDGDLIAFVHREGGGFNIAVMDLDGGGER---------------V--LTD-----TGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCCCCEEEEEEccCCceEEEEEeCCCCCeE---------------E--ccC-----CCCCCCceECCCCCEEEEEEeCC
Confidence 55 55555544443 2333333221110 0 011 11123458999999998887765
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.54 E-value=0.00034 Score=80.12 Aligned_cols=261 Identities=12% Similarity=0.140 Sum_probs=136.3
Q ss_pred EEEEeeCCeEEEEEcC-----CcEEEeecCCceeEEEEEecChhhhhhcCcc-ceEEEcCCccEEEEEe-CCcEEEEEEE
Q 001567 24 IIYFKVNNGLLLIASP-----CHIELWSSSQHKVRLGKYKRDSESVQREGEN-LQAVWSPDTKLIAVVT-SSLYLHIFKV 96 (1052)
Q Consensus 24 vv~fSpdg~llA~~sd-----~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~-~~v~wSPDg~~Lav~t-~dg~l~i~~l 96 (1052)
-++++|++++|-++.+ +.|..|........+....+.. ..|.. ..++.+||+++|+++. .+|.+.+|++
T Consensus 41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~----~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP----SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE----ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec----cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 3778999887666632 4788888753212333332221 12332 4699999999999987 5899999999
Q ss_pred EecCceeecCCCCCCCceeeeEeeeeccccccccccce--EEEEeecCCeEEEEe-cCCcEEEEeccCccccceeecccC
Q 001567 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLS--VSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSS 173 (1052)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~i~~d~~~llv~t-~dg~v~~~~wd~~~~~~~~l~~~~ 173 (1052)
......... ...+.....+.......... -..+.++++.+++.. ....|..+.++..... +..
T Consensus 117 ~~~g~l~~~---------~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~-l~~---- 182 (345)
T PF10282_consen 117 DDDGSLGEV---------VQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK-LTP---- 182 (345)
T ss_dssp CTTSEEEEE---------EEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T-EEE----
T ss_pred cCCccccee---------eeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce-EEE----
Confidence 754211000 00000000000000011111 234567777777653 3457888888755421 110
Q ss_pred CCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEe-cCCceeeeeec--cc
Q 001567 174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFI--KI 250 (1052)
Q Consensus 174 ~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~-~d~~i~~w~~~--~~ 250 (1052)
.. ......+..-+.+. |+|||+++++.. .+.++.+++.. .+
T Consensus 183 -----~~---------------------~~~~~~G~GPRh~~----------f~pdg~~~Yv~~e~s~~v~v~~~~~~~g 226 (345)
T PF10282_consen 183 -----VD---------------------SIKVPPGSGPRHLA----------FSPDGKYAYVVNELSNTVSVFDYDPSDG 226 (345)
T ss_dssp -----EE---------------------EEECSTTSSEEEEE----------E-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred -----ee---------------------ccccccCCCCcEEE----------EcCCcCEEEEecCCCCcEEEEeecccCC
Confidence 00 00012233344444 456666544433 23344444333 11
Q ss_pred ce------------ecCCCCeEEEEEcCCCCEEEEEe-eCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC
Q 001567 251 DK------------ELGSGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP 317 (1052)
Q Consensus 251 ~~------------~~gh~~~v~va~spd~~~lAsgs-~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp 317 (1052)
.. ..+...+-.++++|||++|.+.. .+++|.+|+++.....+..+....- .-..-+.++++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-----~G~~Pr~~~~s~ 301 (345)
T PF10282_consen 227 SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-----GGKFPRHFAFSP 301 (345)
T ss_dssp EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-----SSSSEEEEEE-T
T ss_pred ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-----CCCCccEEEEeC
Confidence 00 01222344899999999877655 4579999999542333333332110 122268999999
Q ss_pred CCCEEEEEEc-CCcEEEEEc--CCCeEEE
Q 001567 318 DNSAFAVGWK-SRGLTVWSV--SGCRLMS 343 (1052)
Q Consensus 318 Dg~~Lasg~~-Dg~v~vWd~--~~~~l~~ 343 (1052)
||++|+++.. ++.|.+|++ .+|.+..
T Consensus 302 ~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 302 DGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred CCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 9999998875 578999976 4666543
No 250
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=6.7e-07 Score=99.05 Aligned_cols=292 Identities=12% Similarity=0.141 Sum_probs=174.1
Q ss_pred ccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee----cCCCCeE-EEEEcC--CCCEEEEEee
Q 001567 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAP--EQQILAVGTR 276 (1052)
Q Consensus 204 ~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~----~gh~~~v-~va~sp--d~~~lAsgs~ 276 (1052)
+..|.++|..+. |...|..++++++|..+.+||....... .||...| -..|-| +.+.|++.+.
T Consensus 138 L~~H~GcVntV~----------FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 138 LNKHKGCVNTVH----------FNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred ccCCCCccceee----------ecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccc
Confidence 345677777665 4778999999999999999998876543 6888888 666777 4567999999
Q ss_pred CCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCC-CEEEEEEcCCcEEEEEcCCCeEEEE--ecccccC--
Q 001567 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCRLMST--IRQISLS-- 351 (1052)
Q Consensus 277 Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg-~~Lasg~~Dg~v~vWd~~~~~l~~t--l~~~~~~-- 351 (1052)
||.|++=.+...+....+..... |.|+|..++.-|+. +-|.++++|+.+.-.|+........ .+.+...
T Consensus 208 dgqvr~s~i~~t~~~e~t~rl~~------h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENTKRLAP------HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER 281 (559)
T ss_pred cCceeeeeeccccceecceeccc------ccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence 99999988876343332322221 99999999999975 5889999999999999866533221 1222122
Q ss_pred -ceeeeeEcCCCCCCccceeeee--eeeEEecCCceEE------EEe-cCC-----cccEEEEeccceeeeeccCCceee
Q 001567 352 -SISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLY------AIE-EGS-----SERVLIFSFGKCCLNRGVSGMTYA 416 (1052)
Q Consensus 352 -~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~------~~~-~~~-----~~~v~~~s~~k~~~s~s~d~~v~~ 416 (1052)
..++++..|.. .++..+.|. -.++++....+.- ... ..| .-.|..+.+ +.+++-.+
T Consensus 282 v~L~~Ia~~P~n--t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Y-------sh~~sElL 352 (559)
T KOG1334|consen 282 VGLYTIAVDPRN--TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVY-------SHDGSELL 352 (559)
T ss_pred eeeeeEecCCCC--ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEe-------cCCcccee
Confidence 34566666654 223333333 3445543321110 000 000 111211111 11111111
Q ss_pred eEeeecCceEEEEecC-----CcchheeeeeccCcccccCCC--cEEEEEE-ccCCCEEEEEeCCceE-EEEccCCcEEE
Q 001567 417 RQVIYGEDRLLVVQSE-----DTDELKILHLNLPVSYISQNW--PVQHVAA-SKDGMFLAVAGLHGLI-LYDIRQKKWRV 487 (1052)
Q Consensus 417 w~~~~~~~~l~~~~~~-----~~~~~~w~~~~~p~~~~~h~~--~V~~va~-SpdG~~lavag~dG~i-lwd~~s~~w~~ 487 (1052)
..+.+..+|+.... +..-..-..--.|..|+||.. .|..+-| -|...|+++|+..|.| +|+-.++..-.
T Consensus 353 --aSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 353 --ASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred --eeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence 11223333333211 000000011123556999854 4777877 6888999999999999 99998876544
Q ss_pred ecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeC
Q 001567 488 FGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (1052)
Q Consensus 488 f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~elrly~~ 528 (1052)
|.. ..+ .+|.++.-+...-|.|+. +-++.|++|..
T Consensus 431 ~Me--gDr-~VVNCLEpHP~~PvLAsS---Gid~DVKIWTP 465 (559)
T KOG1334|consen 431 FME--GDR-HVVNCLEPHPHLPVLASS---GIDHDVKIWTP 465 (559)
T ss_pred Hhh--ccc-ceEeccCCCCCCchhhcc---CCccceeeecC
Confidence 421 111 245567777776665533 56688999976
No 251
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.53 E-value=0.0013 Score=75.29 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=47.0
Q ss_pred EEEEcCCCCEEEEEee-CCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEc-CCcEEEEEcC
Q 001567 261 CASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVS 337 (1052)
Q Consensus 261 ~va~spd~~~lAsgs~-Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~-Dg~v~vWd~~ 337 (1052)
++.++|+++++.+... ...|.+|+++.....+........+ ....-+.++|+|||+++.+..+ +++|.++++.
T Consensus 148 ~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~----~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 148 QVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP----PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS----TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred eEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccc----cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 8999999998777543 3589999998733222221111111 2334589999999998866654 6889999987
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.51 E-value=6.2e-06 Score=87.86 Aligned_cols=254 Identities=10% Similarity=0.042 Sum_probs=133.0
Q ss_pred CccceEEEcCCccEEEEEeCCcEEEEEEEEecCceee-----cCCCCCCCceeeeEeeeeccccccccccceEEEEee-c
Q 001567 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ-----IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-D 141 (1052)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-d 141 (1052)
.-+.+|.|..+|.+||+|..+|.|.+|.=+...+.-+ +..|.++=-.+.++ ...++ ...+.-+.. .
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSl--eieEK------inkIrw~~~~n 97 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSL--EIEEK------INKIRWLDDGN 97 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhh--hhhhh------hhhceecCCCC
Confidence 3456899999999999999999999997653332111 11222211111111 11111 112222222 2
Q ss_pred CCeEEEEecCCcEEEEeccCcccc--ceeecccCCCCccceeecccCCCcceeec-CCC----CeeeccccCCCccEEEE
Q 001567 142 NKHMLLGLSDGSLYSISWKGEFYG--AFELVHSSNDSSVAALSHHFPSNGLASVD-TSG----AFVSDHKFPISSAIIWL 214 (1052)
Q Consensus 142 ~~~llv~t~dg~v~~~~wd~~~~~--~~~l~~~~~~~~~i~~i~~s~~~~l~s~~-~~~----~~~~~~~~~~~~~i~~i 214 (1052)
...+++.+.|.++.+|........ ...+. .......+...- +...+ .+. ..++..-..|.-.|.+
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~-~~~~~~~~~~lr------~p~~~~~~~~vea~prRv~aNaHtyhiNS- 169 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLP-EEGPPGTITSLR------LPVEGRHDLEVEASPRRVYANAHTYHINS- 169 (433)
T ss_pred ccEEEEecCCcceeeeeeecccccccccccc-ccCCCCccceee------ceeeccccceeeeeeeeeccccceeEeee-
Confidence 357888899999988544322111 11100 000001110000 00000 000 0011111122333333
Q ss_pred EecCCcceEEEEeeCCcEEEEEecCCceeeeeecccce-e-----c-----CCCCeE-EEEEcCC-CCEEEEEeeCCeEE
Q 001567 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-E-----L-----GSGDAV-CASIAPE-QQILAVGTRRGVVE 281 (1052)
Q Consensus 215 ~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~-~-----~-----gh~~~v-~va~spd-~~~lAsgs~Dg~V~ 281 (1052)
+.+.+|+..+++ ++|-.|.+|+..-... . . .-+..+ +..|+|. ..+++-.+.-|+||
T Consensus 170 ---------IS~NsD~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 170 ---------ISVNSDKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ---------eeecCccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 456788888775 5677889997653211 0 1 112334 7789985 56778888899999
Q ss_pred EEecCCCCceeE---EEEeecCCCC----CCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc-CCCeEEEEeccc
Q 001567 282 LYDLAESASLIR---TVSLYDWGYS----MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV-SGCRLMSTIRQI 348 (1052)
Q Consensus 282 vwd~~~~~~~~~---~l~~~~~~~~----~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~-~~~~l~~tl~~~ 348 (1052)
+-|++...-+-. .+....-|.+ .+-...|..+.||++|+++++-.. -+|++||+ ...+.+.+..-|
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 999985221111 1111111111 122356889999999999998765 79999999 455556555544
No 253
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=0.00011 Score=84.80 Aligned_cols=218 Identities=13% Similarity=0.120 Sum_probs=129.5
Q ss_pred hcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCe-
Q 001567 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKH- 144 (1052)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~- 144 (1052)
.++...++.|.-.+-+||+|+.||-+++..+.+........+- ...+ .++....+.++.++|.-+..+..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gl-------aa~s-nLsmNQtLeGH~~sV~vvTWNe~~Q 84 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGL-------AAAS-NLSMNQTLEGHNASVMVVTWNENNQ 84 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccc-------cccc-ccchhhhhccCcceEEEEEeccccc
Confidence 4555679999999999999999999999999866543222110 0000 112233456666666666654433
Q ss_pred -EEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceE
Q 001567 145 -MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (1052)
Q Consensus 145 -llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 223 (1052)
+..+-.+|.|.+ |---.+.... .......++.|.+|+|+......
T Consensus 85 KLTtSDt~GlIiV--WmlykgsW~E--------------------------------EMiNnRnKSvV~SmsWn~dG~kI 130 (1189)
T KOG2041|consen 85 KLTTSDTSGLIIV--WMLYKGSWCE--------------------------------EMINNRNKSVVVSMSWNLDGTKI 130 (1189)
T ss_pred cccccCCCceEEE--EeeecccHHH--------------------------------HHhhCcCccEEEEEEEcCCCcEE
Confidence 333333444433 3311111100 01113456789999998888888
Q ss_pred EEEeeCCcEEEEEecCCceeeeeecccceecCCCCeEEEEEcCCCCEEEEEeeCCeEEEEecCCCC------ceeEEEEe
Q 001567 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA------SLIRTVSL 297 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~gh~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~------~~~~~l~~ 297 (1052)
+.+..||.+++ |+-|| -++|.-. +.| .....+.||+|.+.+..+-.+|.+.+||.+.+. .+.-...+
T Consensus 131 cIvYeDGavIV-GsvdG-NRIwgKe----Lkg-~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg 203 (1189)
T KOG2041|consen 131 CIVYEDGAVIV-GSVDG-NRIWGKE----LKG-QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTG 203 (1189)
T ss_pred EEEEccCCEEE-Eeecc-ceecchh----cch-heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeee
Confidence 88889998765 34443 2455322 122 112268899999999999999999999976421 11111111
Q ss_pred ecCCCCCCCCCCeeEEEEC--------CCCCEEEEEEcCCcEEEEEc
Q 001567 298 YDWGYSMDDTGPVSCIAWT--------PDNSAFAVGWKSRGLTVWSV 336 (1052)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~S--------pDg~~Lasg~~Dg~v~vWd~ 336 (1052)
. .+.....+..+.|. ||-..||++.++|.+.|-.-
T Consensus 204 ~----~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 204 I----FSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred e----ecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 0 01112235556663 58889999999988877643
No 254
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.50 E-value=5.5e-05 Score=96.23 Aligned_cols=214 Identities=20% Similarity=0.244 Sum_probs=122.0
Q ss_pred CCccEEEEEecCCcceEEEEeeCCcEEEEEe----cCCceeeeeecccceecCCCCeE-EEEEcCCCCEEEEEeeCCeEE
Q 001567 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSV----SKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVE 281 (1052)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~----~d~~i~~w~~~~~~~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~ 281 (1052)
....|.++.|-+..+..+.+..+|.++...- ++..+.+. ......+ |++||||+.+||..+.+|++.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~V--------G~vd~GI~a~~WSPD~Ella~vT~~~~l~ 145 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIV--------GSVDSGILAASWSPDEELLALVTGEGNLL 145 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEE--------EEEcCcEEEEEECCCcCEEEEEeCCCEEE
Confidence 4567999999888888888889999887732 22222211 1124567 999999999999999999988
Q ss_pred EEecCCC------------C--cee--------EEEEeec----------C-------CCCCCCCCCeeEEEECCCCCEE
Q 001567 282 LYDLAES------------A--SLI--------RTVSLYD----------W-------GYSMDDTGPVSCIAWTPDNSAF 322 (1052)
Q Consensus 282 vwd~~~~------------~--~~~--------~~l~~~~----------~-------~~~~~h~g~V~~l~~SpDg~~L 322 (1052)
+-+-+-. + +.+ ..++|.. . +... +...-..|+|..||+++
T Consensus 146 ~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yF 224 (928)
T PF04762_consen 146 LMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYF 224 (928)
T ss_pred EEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEE
Confidence 7543210 0 000 0111100 0 0000 22244679999999999
Q ss_pred EEEEc---C---CcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeeeeeeEEecCCceEEEEecCCcc--
Q 001567 323 AVGWK---S---RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSE-- 394 (1052)
Q Consensus 323 asg~~---D---g~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~-- 394 (1052)
|+.+- . +.++||+-.| .+..+-+.- .+-- ....|.+.|. ++.....+.+
T Consensus 225 AVss~~~~~~~~R~iRVy~ReG-~L~stSE~v-~gLe--------------------~~l~WrPsG~-lIA~~q~~~~~~ 281 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSREG-ELQSTSEPV-DGLE--------------------GALSWRPSGN-LIASSQRLPDRH 281 (928)
T ss_pred EEEEEEcCCCceeEEEEECCCc-eEEeccccC-CCcc--------------------CCccCCCCCC-EEEEEEEcCCCc
Confidence 99875 2 5799999874 344332210 1111 2234555432 2222211111
Q ss_pred cEEEEeccceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCc
Q 001567 395 RVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (1052)
Q Consensus 395 ~v~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG 474 (1052)
.|+-|.- +| +.+|+ ..+|. ......|..++|++|+..||+.-.|.
T Consensus 282 ~VvFfEr---------NG------Lrhge------------------F~l~~--~~~~~~v~~l~Wn~ds~iLAv~~~~~ 326 (928)
T PF04762_consen 282 DVVFFER---------NG------LRHGE------------------FTLRF--DPEEEKVIELAWNSDSEILAVWLEDR 326 (928)
T ss_pred EEEEEec---------CC------cEeee------------------EecCC--CCCCceeeEEEECCCCCEEEEEecCC
Confidence 1111111 00 11111 11121 22345789999999999999988777
Q ss_pred eEEEEccCCcEEE
Q 001567 475 LILYDIRQKKWRV 487 (1052)
Q Consensus 475 ~ilwd~~s~~w~~ 487 (1052)
.-+|.+..-.|.+
T Consensus 327 vqLWt~~NYHWYL 339 (928)
T PF04762_consen 327 VQLWTRSNYHWYL 339 (928)
T ss_pred ceEEEeeCCEEEE
Confidence 3399999888854
No 255
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=6.9e-06 Score=89.14 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=110.8
Q ss_pred EEEEEecC--Cceeeeeeccccee----------cCCCCeE---EEEEcCC--CCEEEEEeeCCeEEEEecCCCCceeEE
Q 001567 232 LMSCSVSK--KGLKLAEFIKIDKE----------LGSGDAV---CASIAPE--QQILAVGTRRGVVELYDLAESASLIRT 294 (1052)
Q Consensus 232 ~~~~~~~d--~~i~~w~~~~~~~~----------~gh~~~v---~va~spd--~~~lAsgs~Dg~V~vwd~~~~~~~~~~ 294 (1052)
++++|+.. ..+++|+....+.. .+-.-+| .+.|-+. ...+|+++.-+.||+||.....+++..
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 44445555 56778887655332 2222333 6778887 889999999999999999874466666
Q ss_pred EEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEE-ecccccCceeeeeEcCCCCCCccceeeee
Q 001567 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST-IRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (1052)
Q Consensus 295 l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~t-l~~~~~~~v~s~~~sp~~~~~~~~l~sg~ 373 (1052)
+.. -..+++++...|+|+.+.+|..-|.+..+|..++++... +.+. .++++++..+|.. ..+++++
T Consensus 243 fd~--------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-tGsirsih~hp~~----~~las~G 309 (412)
T KOG3881|consen 243 FDF--------LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-TGSIRSIHCHPTH----PVLASCG 309 (412)
T ss_pred ecc--------ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-cCCcceEEEcCCC----ceEEeec
Confidence 665 577899999999999999999999999999999887654 7776 7889999999987 7888877
Q ss_pred ---eeeEEecCCceEEE
Q 001567 374 ---SMMQWDEYGYRLYA 387 (1052)
Q Consensus 374 ---~~~~W~~~~~~l~~ 387 (1052)
-+++.|.++.+++.
T Consensus 310 LDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 310 LDRYVRIHDIKTRKLLH 326 (412)
T ss_pred cceeEEEeecccchhhh
Confidence 78888888755543
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.49 E-value=1.9e-06 Score=103.70 Aligned_cols=192 Identities=14% Similarity=0.094 Sum_probs=131.5
Q ss_pred EEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCC
Q 001567 73 AVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG 152 (1052)
Q Consensus 73 v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg 152 (1052)
..+.-+.+.+++++.++.+.+|+...+...... +..+.+ .+. ...+.-++.+.-++..|+.-|
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i---~~~er~------------~l~--~~~~~g~s~~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKI---QSDERC------------TLY--SSLIIGDSAEELYIASGSVFG 155 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhc---CCCceE------------EEE--eEEEEeccCcEEEEEeccccc
Confidence 444456688888888888888887633211000 000000 000 001111222223566677778
Q ss_pred cEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcE
Q 001567 153 SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQL 232 (1052)
Q Consensus 153 ~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~ 232 (1052)
.+..|.|. +.+... -+.+|.+.|.++.+ +.||++
T Consensus 156 ~iivW~~~-~dn~p~-----------------------------------~l~GHeG~iF~i~~----------s~dg~~ 189 (967)
T KOG0974|consen 156 EIIVWKPH-EDNKPI-----------------------------------RLKGHEGSIFSIVT----------SLDGRY 189 (967)
T ss_pred cEEEEecc-ccCCcc-----------------------------------eecccCCceEEEEE----------ccCCcE
Confidence 88776666 211111 13466677777664 889999
Q ss_pred EEEEecCCceeeeeeccccee----cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCC
Q 001567 233 MSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT 307 (1052)
Q Consensus 233 ~~~~~~d~~i~~w~~~~~~~~----~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~ 307 (1052)
+++.++|.++++|+..+.+.. .||+..+ .+.|.|. .+++++.|.+.++|+.+ +..+.++.+ |.
T Consensus 190 i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~--------h~ 257 (967)
T KOG0974|consen 190 IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDE--------HS 257 (967)
T ss_pred EEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhhhh--------hh
Confidence 999999999999998876544 5899999 8889998 89999999999999875 344445555 65
Q ss_pred -CCeeEEEECCCCCEEEEEEcCCcEEEEEcCCC
Q 001567 308 -GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1052)
Q Consensus 308 -g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~ 339 (1052)
+.+..++..++....++++.|+++++|+..+.
T Consensus 258 g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 258 GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred hcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 56899999999999999999999999998664
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=2.4e-05 Score=92.60 Aligned_cols=182 Identities=16% Similarity=0.169 Sum_probs=103.5
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeC---CeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEE-EEcC
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWKS 328 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~D---g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Las-g~~D 328 (1052)
..+...+ ..+|||||+.||..+.+ ..|.+|++++ ++. ..+.. ..+.+...+|||||+.|+. .+.+
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~-g~~-~~l~~--------~~g~~~~~~~SpDG~~la~~~~~~ 264 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT-GRR-EQITN--------FEGLNGAPAWSPDGSKLAFVLSKD 264 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-CCE-EEccC--------CCCCcCCeEECCCCCEEEEEEccC
Confidence 3455666 89999999999887644 3688889876 443 22322 3455667999999998874 4455
Q ss_pred C--cEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee------eeeEEecCCceEEEEe-cCCcccEEEE
Q 001567 329 R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIE-EGSSERVLIF 399 (1052)
Q Consensus 329 g--~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~~-~~~~~~v~~~ 399 (1052)
+ .|.+||+.++... .+..+ .....++.|+|++ ..++-.+ .+..++..+++.-... .+.......+
T Consensus 265 g~~~Iy~~d~~~~~~~-~lt~~-~~~~~~~~~spDg----~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~ 338 (430)
T PRK00178 265 GNPEIYVMDLASRQLS-RVTNH-PAIDTEPFWGKDG----RTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRL 338 (430)
T ss_pred CCceEEEEECCCCCeE-EcccC-CCCcCCeEECCCC----CEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEE
Confidence 5 4778899887643 34333 3345678899998 4433212 4556666665543222 1211122345
Q ss_pred ec-cceeeeecc-CCc--eeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCC
Q 001567 400 SF-GKCCLNRGV-SGM--TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (1052)
Q Consensus 400 s~-~k~~~s~s~-d~~--v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~d 473 (1052)
++ ++.++..+. ++. +.++++..+..+. + .+.+.....+|||||++++.++.+
T Consensus 339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~---------------------l-t~~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 339 SADGKTLVMVHRQDGNFHVAAQDLQRGSVRI---------------------L-TDTSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CCCCCEEEEEEccCCceEEEEEECCCCCEEE---------------------c-cCCCCCCCceECCCCCEEEEEEec
Confidence 55 555543332 221 2333332222110 0 011111245899999999887654
No 258
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.40 E-value=1.2e-05 Score=85.85 Aligned_cols=309 Identities=13% Similarity=0.136 Sum_probs=184.7
Q ss_pred EeeCCcEEEEEecCCceeeeeec-ccceec--CC--CCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCc---eeEEEE
Q 001567 226 LYSNGQLMSCSVSKKGLKLAEFI-KIDKEL--GS--GDAV-CASIAPEQQILAVGTRRGVVELYDLAESAS---LIRTVS 296 (1052)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~-~~~~~~--gh--~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~---~~~~l~ 296 (1052)
.-|--.-+++.+.|.++++|--. .++.|+ -| ..++ +++++++.+.|.+|-.+|+|.-+.+...-. ..+...
T Consensus 32 l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~ 111 (404)
T KOG1409|consen 32 LIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYL 111 (404)
T ss_pred eccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhh
Confidence 33445557788899999999543 344442 12 2445 889999999999999999999988765222 122222
Q ss_pred eecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc-CCCeEEEEec--cccc---CceeeeeEcCCCCCCcccee
Q 001567 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV-SGCRLMSTIR--QISL---SSISSPIVKPNQDCKYEPLM 370 (1052)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~-~~~~l~~tl~--~~~~---~~v~s~~~sp~~~~~~~~l~ 370 (1052)
.|.+.|..+-|+-....+++.+.|..+. |.. ..+.-+.... .... -.+. .+|--+-
T Consensus 112 --------~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~-~~fvGd~-------- 173 (404)
T KOG1409|consen 112 --------AHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDAL-YAFVGDH-------- 173 (404)
T ss_pred --------hhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeE-EEEeccc--------
Confidence 3999999999999999999999997774 443 2222111000 0000 0000 1111000
Q ss_pred ee-eeeeEEecCCceEEEEecCCcccEEEEec---cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCc
Q 001567 371 SG-TSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 446 (1052)
Q Consensus 371 sg-~~~~~W~~~~~~l~~~~~~~~~~v~~~s~---~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~ 446 (1052)
+| ++..--..++-.++.+..+|.+.+.++.+ .+.+.++..|..+..|++.-.... ..
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-------------------~~ 234 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-------------------AY 234 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-------------------ee
Confidence 00 13333445566778888899999977776 557789999999999998654432 23
Q ss_pred ccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCc-----EEEecCccc-eeee----------EEEEEEE-----
Q 001567 447 SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK-----WRVFGDITQ-EQKI----------QSKGLLW----- 504 (1052)
Q Consensus 447 ~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~-----w~~f~~~~~-e~~~----------~v~gl~W----- 504 (1052)
...+|+..|+.++.-+--+.+.+++.||.+ +|+.+..+ |+.-.+..+ ++.+ ...|+.-
T Consensus 235 el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crk 314 (404)
T KOG1409|consen 235 ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRK 314 (404)
T ss_pred eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhh
Confidence 456899999998888888999999999999 99987543 443211100 0000 0000000
Q ss_pred eCCEEEEEEEecC------CCeEEEEEeeC-----CCCCCcceeEEeecCCccEEEEee--CCEEEEEEcCCeEEEEEEE
Q 001567 505 LGKIIVVCNYIDS------SNTYELLFYPR-----YHLDQSSLLCRKSLLAKPIVMDVY--EDYILVTYRPFDVHIFHVK 571 (1052)
Q Consensus 505 ~~~~li~~~~~~~------~~~~elrly~~-----~~ld~~~~l~~~~~~~~~~~~s~~--~~~llv~~~d~~i~l~~~~ 571 (1052)
.++.+..-|.+.. +...++|+-+. +++....+..-++....+..|... .+.|++...|..|.||+++
T Consensus 315 cg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~ 394 (404)
T KOG1409|consen 315 CGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVR 394 (404)
T ss_pred hhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEech
Confidence 0111111111111 23466776544 133333343334455556666654 3457777789999999885
No 259
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.37 E-value=8.4e-05 Score=87.63 Aligned_cols=207 Identities=16% Similarity=0.121 Sum_probs=118.3
Q ss_pred eEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC---CcEEEEEcCCCeEEEEecccccCceee
Q 001567 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGCRLMSTIRQISLSSISS 355 (1052)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D---g~v~vWd~~~~~l~~tl~~~~~~~v~s 355 (1052)
.|.++|.+ +...+.+.. +.+.+.+.+|||||+.||.+..+ ..|.+|++.++..... ..+ ...+.+
T Consensus 171 ~l~~~d~~--g~~~~~l~~--------~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~-~~~~~~ 238 (417)
T TIGR02800 171 ELQVADYD--GANPQTITR--------SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASF-PGMNGA 238 (417)
T ss_pred eEEEEcCC--CCCCEEeec--------CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecC-CCCccc
Confidence 56677664 333444544 66778999999999999987654 4799999988754322 222 234567
Q ss_pred eeEcCCCCCCcccee-eee-----eeeEEecCCceEEEEecCCcccE--EEEec-cceeeeec-cCCceeeeEeeecCce
Q 001567 356 PIVKPNQDCKYEPLM-SGT-----SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRG-VSGMTYARQVIYGEDR 425 (1052)
Q Consensus 356 ~~~sp~~~~~~~~l~-sg~-----~~~~W~~~~~~l~~~~~~~~~~v--~~~s~-~k~~~s~s-~d~~v~~w~~~~~~~~ 425 (1052)
++|+|++ ..++ +.. .+..|+.+++....... +.... ..+++ ++.++..+ .++...+|.+......
T Consensus 239 ~~~spDg----~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 239 PAFSPDG----SKLAVSLSKDGNPDIYVMDLDGKQLTRLTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred eEECCCC----CEEEEEECCCCCccEEEEECCCCCEEECCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 8999998 5443 222 57778887765433322 21111 34555 55554433 2333233332211110
Q ss_pred EEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCc---eE-EEEccCCcEEEecCccceeeeEEEE
Q 001567 426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG---LI-LYDIRQKKWRVFGDITQEQKIQSKG 501 (1052)
Q Consensus 426 l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG---~i-lwd~~s~~w~~f~~~~~e~~~~v~g 501 (1052)
...+..+...+...+|||||++++.++.++ .+ +||+.++.++.+..... ...
T Consensus 314 -------------------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-----~~~ 369 (417)
T TIGR02800 314 -------------------VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGL-----DES 369 (417)
T ss_pred -------------------EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCC-----CCC
Confidence 011111233456689999999999988876 67 99998877766543211 123
Q ss_pred EEEe--CCEEEEEEEecCCCeEEEEEeeC
Q 001567 502 LLWL--GKIIVVCNYIDSSNTYELLFYPR 528 (1052)
Q Consensus 502 l~W~--~~~li~~~~~~~~~~~elrly~~ 528 (1052)
..|. +..++.++.. .....+.+++.
T Consensus 370 p~~spdg~~l~~~~~~--~~~~~l~~~~~ 396 (417)
T TIGR02800 370 PSFAPNGRMILYATTR--GGRGVLGLVST 396 (417)
T ss_pred ceECCCCCEEEEEEeC--CCcEEEEEEEC
Confidence 3454 4566655332 33355666654
No 260
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.34 E-value=0.0012 Score=72.04 Aligned_cols=249 Identities=16% Similarity=0.241 Sum_probs=148.4
Q ss_pred CCeEEEEEcCCCCEEEEEeeC---CeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC-CcEE
Q 001567 257 GDAVCASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLT 332 (1052)
Q Consensus 257 ~~~v~va~spd~~~lAsgs~D---g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D-g~v~ 332 (1052)
..+.-++|+|+++.|-++-.+ |.|..|.++.....+..+..... ...+-+.++.++||++++++... |.|.
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-----~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-----PGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-----CCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 344589999999888777654 78999999863233333322110 11122889999999999998754 7899
Q ss_pred EEEcCC-CeEEEEec--ccccCc----------eeeeeEcCCCCCCccceeeee----eeeEEecCCceEEEEe-----c
Q 001567 333 VWSVSG-CRLMSTIR--QISLSS----------ISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIE-----E 390 (1052)
Q Consensus 333 vWd~~~-~~l~~tl~--~~~~~~----------v~s~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~-----~ 390 (1052)
|.-+.. |.+..... .| ... +....+.|++ +.+++.. .+.+++.+.+.|-... .
T Consensus 115 v~p~~~dG~l~~~v~~~~h-~g~~p~~rQ~~~h~H~a~~tP~~----~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKH-TGSGPHERQESPHVHSANFTPDG----RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred EEEcccCCccccceeeeec-CCCCCCccccCCccceeeeCCCC----CEEEEeecCCceEEEEEcccCccccccccccCC
Confidence 998843 43322211 11 122 5566778887 7776554 6777887766553221 2
Q ss_pred CCcccEEEEec-cceeeeec-cCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEE
Q 001567 391 GSSERVLIFSF-GKCCLNRG-VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLA 468 (1052)
Q Consensus 391 ~~~~~v~~~s~-~k~~~s~s-~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~la 468 (1052)
|...+=+.|.+ +|.+...+ .+++|.+|.......++--. .....+|..|.+.+| .-.+.+|+||++|.
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l---------Q~i~tlP~dF~g~~~-~aaIhis~dGrFLY 259 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL---------QTIDTLPEDFTGTNW-AAAIHISPDGRFLY 259 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe---------eeeccCccccCCCCc-eeEEEECCCCCEEE
Confidence 32334477777 77665544 57778887765532322111 112235777777665 46788899999999
Q ss_pred EEeCCc-eE-EEEcc--CCcEEEecCccceeeeE-EEEEEEeCCEEEEEEEecCCCeEEEEEeeCC
Q 001567 469 VAGLHG-LI-LYDIR--QKKWRVFGDITQEQKIQ-SKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (1052)
Q Consensus 469 vag~dG-~i-lwd~~--s~~w~~f~~~~~e~~~~-v~gl~W~~~~li~~~~~~~~~~~elrly~~~ 529 (1052)
++.+.- .+ +|.+. +++...++....|..+- -..+.-.+++||+++- ..+.|.+|.++
T Consensus 260 asNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q----~sd~i~vf~~d 321 (346)
T COG2706 260 ASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ----KSDNITVFERD 321 (346)
T ss_pred EecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc----CCCcEEEEEEc
Confidence 875532 33 66653 55554443322221101 1134445889998732 33569999986
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.34 E-value=4.1e-05 Score=81.78 Aligned_cols=285 Identities=13% Similarity=0.145 Sum_probs=154.2
Q ss_pred eEEEEeeCCeEEEEEc-CCcEEEeecCCcee----EEEEEe------cChhhhhhcCccceEEEcCCcc--EEEEEeCCc
Q 001567 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKV----RLGKYK------RDSESVQREGENLQAVWSPDTK--LIAVVTSSL 89 (1052)
Q Consensus 23 ~vv~fSpdg~llA~~s-d~~v~IW~~~~~~~----~l~~~~------r~~~sl~~~G~~~~v~wSPDg~--~Lav~t~dg 89 (1052)
..|.|..+|.+||++. ++.|.++--.+... -.+.+. .-.++++-...+..+.|-+++. ...+.|.|.
T Consensus 29 s~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdk 108 (433)
T KOG1354|consen 29 SAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDK 108 (433)
T ss_pred eeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCc
Confidence 3478999999999995 67788886542221 011110 1124555556778999999885 577788999
Q ss_pred EEEEEEEEecCcee---ecCCC-CC---CCceeeeE-------eeeeccccccccccceEEEEeecCC-eEEEEecCCcE
Q 001567 90 YLHIFKVQITEKSI---QIGGK-QP---SGLFFIKI-------SLVLNEQLPFAEKGLSVSNIVSDNK-HMLLGLSDGSL 154 (1052)
Q Consensus 90 ~l~i~~l~~~~~~~---~~~~~-~~---~~~~~~~~-------~~~~~~~~~~~~~~~~v~~i~~d~~-~llv~t~dg~v 154 (1052)
++++|.+.....+. ..... ++ ..+.++.+ +..+ .++.-.++.-.+-+|+.+++ +.+++..|-.|
T Consensus 109 tiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~p-rRv~aNaHtyhiNSIS~NsD~Et~lSADdLRI 187 (433)
T KOG1354|consen 109 TIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASP-RRVYANAHTYHINSISVNSDKETFLSADDLRI 187 (433)
T ss_pred ceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeee-eeeccccceeEeeeeeecCccceEeeccceee
Confidence 99999997443221 00000 00 01111111 1111 11222344555666665543 45555666666
Q ss_pred EEEeccCcc-ccceeec-ccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcc-eEEEEeeCCc
Q 001567 155 YSISWKGEF-YGAFELV-HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR-LLFVLYSNGQ 231 (1052)
Q Consensus 155 ~~~~wd~~~-~~~~~l~-~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~~~~s~dG~ 231 (1052)
.+ |+.+. .+.+.+. .+|+-- .+-..-|++-+|+|..+ .++.-|+.|.
T Consensus 188 NL--Wnlei~d~sFnIVDIKP~nm----------------------------EeLteVITsaEFhp~~cn~f~YSSSKGt 237 (433)
T KOG1354|consen 188 NL--WNLEIIDQSFNIVDIKPANM----------------------------EELTEVITSAEFHPHHCNVFVYSSSKGT 237 (433)
T ss_pred ee--ccccccCCceeEEEccccCH----------------------------HHHHHHHhhhccCHhHccEEEEecCCCc
Confidence 55 66544 2333211 011000 00012355667777664 3344444454
Q ss_pred EEEEEec-----CCceeeeeec-cccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCC
Q 001567 232 LMSCSVS-----KKGLKLAEFI-KIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (1052)
Q Consensus 232 ~~~~~~~-----d~~i~~w~~~-~~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~ 301 (1052)
+-++... |..-++.... .+... .+.-..| .+.|+++|+++++-. =-+|++||+....+++.+....+.-
T Consensus 238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~l 316 (433)
T KOG1354|consen 238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYL 316 (433)
T ss_pred EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhH
Confidence 4443332 1111111110 00000 1223456 889999999998732 2699999997667777776653321
Q ss_pred -------CCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCC
Q 001567 302 -------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1052)
Q Consensus 302 -------~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~ 339 (1052)
|...---.=..++||.++.++++|+....+++++...|
T Consensus 317 r~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 317 RSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 10011111246899999999999999999999996544
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=7.2e-05 Score=88.06 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=86.0
Q ss_pred EEEeeCCcE---EEEEecCCceeee--eecccc--eecCCCCeE-EEEEcCCCCEEEEEee-CC----eEEEEecCCC-C
Q 001567 224 FVLYSNGQL---MSCSVSKKGLKLA--EFIKID--KELGSGDAV-CASIAPEQQILAVGTR-RG----VVELYDLAES-A 289 (1052)
Q Consensus 224 ~~~s~dG~~---~~~~~~d~~i~~w--~~~~~~--~~~gh~~~v-~va~spd~~~lAsgs~-Dg----~V~vwd~~~~-~ 289 (1052)
-.++|||+. +++...++...+| +...++ .+....+.. ..+|||||+.||..+. +| .+..|++... +
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 356889874 2233344444444 433332 222223333 7899999999987653 23 3444666541 1
Q ss_pred ceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEE-cCCcEEEEEc--CC-CeEEEEecccccCceeeeeEcCCCCCC
Q 001567 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSV--SG-CRLMSTIRQISLSSISSPIVKPNQDCK 365 (1052)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~-~Dg~v~vWd~--~~-~~l~~tl~~~~~~~v~s~~~sp~~~~~ 365 (1052)
.....+.. ++.+.....+|||||+.|+..+ .+|...+|.+ .+ +.....+..+ ...+..+.|+|++
T Consensus 270 g~~~~lt~-------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-~~~~~~p~wSPDG--- 338 (428)
T PRK01029 270 GKPRRLLN-------EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-YRNSSCPAWSPDG--- 338 (428)
T ss_pred CcceEeec-------CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC-CCCccceeECCCC---
Confidence 12222221 0234456789999999888766 4666666654 32 2223333333 3456788999998
Q ss_pred ccceeeee------eeeEEecCCceEEEEe
Q 001567 366 YEPLMSGT------SMMQWDEYGYRLYAIE 389 (1052)
Q Consensus 366 ~~~l~sg~------~~~~W~~~~~~l~~~~ 389 (1052)
+.++-.. .+.+|+..+++.....
T Consensus 339 -~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt 367 (428)
T PRK01029 339 -KKIAFCSVIKGVRQICVYDLATGRDYQLT 367 (428)
T ss_pred -CEEEEEEcCCCCcEEEEEECCCCCeEEcc
Confidence 5544221 5778888887665443
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.28 E-value=7.4e-05 Score=88.52 Aligned_cols=148 Identities=12% Similarity=0.081 Sum_probs=89.0
Q ss_pred EEEEeeCCcEEEEEecC---Cceeeeeeccccee--cCCCCeE-EEEEcCCCCEEEE-EeeCC--eEEEEecCCCCceeE
Q 001567 223 LFVLYSNGQLMSCSVSK---KGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAV-GTRRG--VVELYDLAESASLIR 293 (1052)
Q Consensus 223 ~~~~s~dG~~~~~~~~d---~~i~~w~~~~~~~~--~gh~~~v-~va~spd~~~lAs-gs~Dg--~V~vwd~~~~~~~~~ 293 (1052)
...++|||+.++..+.+ ..+.+|+...++.. ....+.+ ..+|||||+.||. .+.+| .|.+||+++ +. ..
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~-~~-~~ 280 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS-RQ-LS 280 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC-CC-eE
Confidence 34568999887766543 24556676554322 2223334 7899999998885 44455 577778875 43 33
Q ss_pred EEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEc-CC--cEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCcccee
Q 001567 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM 370 (1052)
Q Consensus 294 ~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~-Dg--~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~ 370 (1052)
.+.. +.+......|||||+.|+..+. ++ .|.++++.++.... +... ......+.++|++ +.++
T Consensus 281 ~lt~--------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~-~~~~~~~~~Spdg----~~i~ 346 (430)
T PRK00178 281 RVTN--------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFV-GNYNARPRLSADG----KTLV 346 (430)
T ss_pred Eccc--------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC-CCCccceEECCCC----CEEE
Confidence 3433 4556677899999998876664 33 46667777765332 2111 1223457889988 4443
Q ss_pred eee------eeeEEecCCceEE
Q 001567 371 SGT------SMMQWDEYGYRLY 386 (1052)
Q Consensus 371 sg~------~~~~W~~~~~~l~ 386 (1052)
-.. .+..|+..+++..
T Consensus 347 ~~~~~~~~~~l~~~dl~tg~~~ 368 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQRGSVR 368 (430)
T ss_pred EEEccCCceEEEEEECCCCCEE
Confidence 211 4556777666543
No 264
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.28 E-value=7.2e-05 Score=88.73 Aligned_cols=127 Identities=9% Similarity=0.150 Sum_probs=77.5
Q ss_pred EEEEeeCCcEEEEEec-CC--ceeeeeecccce--ecCCCCeE-EEEEcCCCCEEEE-EeeCCe--EEEEecCCCCceeE
Q 001567 223 LFVLYSNGQLMSCSVS-KK--GLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAV-GTRRGV--VELYDLAESASLIR 293 (1052)
Q Consensus 223 ~~~~s~dG~~~~~~~~-d~--~i~~w~~~~~~~--~~gh~~~v-~va~spd~~~lAs-gs~Dg~--V~vwd~~~~~~~~~ 293 (1052)
...++|||+.++..+. ++ .+.+++...++. .....+.. ..+|+|||+.||. .+.+|. |.++|+++ ++ ..
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t-g~-~~ 299 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT-KA-LT 299 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC-CC-eE
Confidence 4567899987776554 33 355666654432 22222233 7899999998875 456675 56666654 33 33
Q ss_pred EEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEc-CCc--EEEEEcCCCeEEE-EecccccCceeeeeEcCCC
Q 001567 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRG--LTVWSVSGCRLMS-TIRQISLSSISSPIVKPNQ 362 (1052)
Q Consensus 294 ~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~-Dg~--v~vWd~~~~~l~~-tl~~~~~~~v~s~~~sp~~ 362 (1052)
.+.. +.+.+...+|||||+.|+..+. ++. |.++++.++.... +..+. ...+++++|++
T Consensus 300 ~lt~--------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~---~~~~~~~SpDG 361 (448)
T PRK04792 300 RITR--------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE---QNLGGSITPDG 361 (448)
T ss_pred ECcc--------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC---CCcCeeECCCC
Confidence 3333 4556678899999998877654 344 5555776665332 22222 23457899998
No 265
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.27 E-value=2e-06 Score=99.23 Aligned_cols=288 Identities=10% Similarity=0.025 Sum_probs=174.9
Q ss_pred hhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCc-eeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecC
Q 001567 64 VQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK-SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN 142 (1052)
Q Consensus 64 l~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 142 (1052)
+.-.|...++..+|-|+-||.++.-| +.+-|++.... ..++....+. ...+.. .+..+..
T Consensus 21 l~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw-----------------~vad~q-ws~h~a~ 81 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPW-----------------QVADVQ-WSPHPAK 81 (1081)
T ss_pred EEecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcc-----------------hhccee-cccCCCC
Confidence 33456777899999999999999888 45666653321 1111100000 000000 0222334
Q ss_pred CeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcce
Q 001567 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (1052)
Q Consensus 143 ~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 222 (1052)
++-++.+++..-.+ |+-....... ....+.++..+|++|.|++.-
T Consensus 82 ~~wiVsts~qkaii--wnlA~ss~~a-------------------------------Ief~lhghsraitd~n~~~q~-- 126 (1081)
T KOG0309|consen 82 PYWIVSTSNQKAII--WNLAKSSSNA-------------------------------IEFVLHGHSRAITDINFNPQH-- 126 (1081)
T ss_pred ceeEEecCcchhhh--hhhhcCCccc-------------------------------eEEEEecCccceeccccCCCC--
Confidence 55666666554333 4432211111 112234677788888886542
Q ss_pred EEEEeeCCcEEEEEecCCceeeeeeccccee-----cCCCCeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEe
Q 001567 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1052)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~-----~gh~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~ 297 (1052)
-.++++++-|..+..||...+..- .-|+.+..|.||-...-+.+.+....|++||...++..+..+++
T Consensus 127 -------pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~ 199 (1081)
T KOG0309|consen 127 -------PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG 199 (1081)
T ss_pred -------CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc
Confidence 236778888888999998766432 23556668999986555555577778999999986677888888
Q ss_pred ecCCCCCCCCCCeeEEEECCC-CCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---
Q 001567 298 YDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (1052)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~SpD-g~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--- 373 (1052)
|...|+.++|..- -..+.+.+.||+|+.||.........-..-....+.-.++-|-++.-.-+..-|.
T Consensus 200 --------~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v 271 (1081)
T KOG0309|consen 200 --------HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMV 271 (1081)
T ss_pred --------cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeee
Confidence 9999999999763 3467788899999999986543221111111234444555555521111111111
Q ss_pred -------eeeEEecC-CceEEEEecCCcccEEEEec---c----------ceeeeeccCCceeeeEee
Q 001567 374 -------SMMQWDEY-GYRLYAIEEGSSERVLIFSF---G----------KCCLNRGVSGMTYARQVI 420 (1052)
Q Consensus 374 -------~~~~W~~~-~~~l~~~~~~~~~~v~~~s~---~----------k~~~s~s~d~~v~~w~~~ 420 (1052)
....|+.. ..+.+.+..||++.|..|-+ + -.++|-|.|.++++|-+.
T Consensus 272 ~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 272 PQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 34456653 45778888999999866655 1 157899999999999864
No 266
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=0.00034 Score=79.19 Aligned_cols=310 Identities=13% Similarity=0.104 Sum_probs=149.2
Q ss_pred CceEEEEeeCCeEEEEEcCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCC-----------c
Q 001567 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS-----------L 89 (1052)
Q Consensus 21 ~~~vv~fSpdg~llA~~sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d-----------g 89 (1052)
.+-.|.+||.|++|++.-...|.+|-.. .+.|..+- -|-.+.-+.|||.-++|++=+.. .
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~GI~lWGG~-------~f~r~~RF--~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQGIALWGGE-------SFDRIQRF--YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeeeEEecCCceEEEEEeccceeeecCc-------cHHHHHhc--cCCCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 3567999999999999998889999764 23332221 13446679999999999986632 4
Q ss_pred EEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceee
Q 001567 90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFEL 169 (1052)
Q Consensus 90 ~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l 169 (1052)
.+.|||+.+|.....+..... ....|. +.-.+.|+++++.-+.|+ +.++ +... -.-+
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~-~~~~WP-----------------~frWS~DdKy~Arm~~~s-isIy--Etps--f~ll 339 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKS-PYLKWP-----------------IFRWSHDDKYFARMTGNS-ISIY--ETPS--FMLL 339 (698)
T ss_pred eEEEEEccccchhcceeccCC-Cccccc-----------------eEEeccCCceeEEeccce-EEEE--ecCc--eeee
Confidence 589999998864322211111 111121 112223333333333322 2222 1111 0001
Q ss_pred cccCCCCccceeecccCCCcc-eeec-CCC-Ceeeccc--cCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCc---
Q 001567 170 VHSSNDSSVAALSHHFPSNGL-ASVD-TSG-AFVSDHK--FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG--- 241 (1052)
Q Consensus 170 ~~~~~~~~~i~~i~~s~~~~l-~s~~-~~~-~~~~~~~--~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~--- 241 (1052)
+..+.....|+....++...+ +-+. +.. ...+..+ .+.+..|+......-.+.-+-.-.+|.++..-....+
T Consensus 340 d~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~ 419 (698)
T KOG2314|consen 340 DKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK 419 (698)
T ss_pred cccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccc
Confidence 111111222222222222221 1111 000 0000000 1122222211111111111223345555544332211
Q ss_pred -------eeeeeecccc---eecCCCCeE-EEEEcCCCCEEEEEeeC---CeEEEEecCCCCceeEEEEeecCCCCCCCC
Q 001567 242 -------LKLAEFIKID---KELGSGDAV-CASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDT 307 (1052)
Q Consensus 242 -------i~~w~~~~~~---~~~gh~~~v-~va~spd~~~lAsgs~D---g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~ 307 (1052)
+.+....... ....-.+.| ..+|-|.|..+|+-+.+ .++++|.+.+.......++.. ..
T Consensus 420 ~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-------dk 492 (698)
T KOG2314|consen 420 VKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-------DK 492 (698)
T ss_pred ccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh-------cc
Confidence 1111111100 002334566 88999999988765543 589999988423222211111 23
Q ss_pred CCeeEEEECCCCCEEEEEE---cCCcEEEEEcCCCeEEEE-ecccccCceeeeeEcCCCCCCccceeeeeee
Q 001567 308 GPVSCIAWTPDNSAFAVGW---KSRGLTVWSVSGCRLMST-IRQISLSSISSPIVKPNQDCKYEPLMSGTSM 375 (1052)
Q Consensus 308 g~V~~l~~SpDg~~Lasg~---~Dg~v~vWd~~~~~l~~t-l~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~ 375 (1052)
...+.+.|||.|++++++. ..|.+..+|+.-..+..+ ...| ...+.+.+.|.| .++.+++++
T Consensus 493 ~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh--~~at~veWDPtG----RYvvT~ss~ 558 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH--FAATEVEWDPTG----RYVVTSSSS 558 (698)
T ss_pred cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc--cccccceECCCC----CEEEEeeeh
Confidence 4468899999999988864 467888888864222211 1112 234556677777 666655533
No 267
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.23 E-value=0.0044 Score=67.68 Aligned_cols=250 Identities=11% Similarity=0.123 Sum_probs=134.5
Q ss_pred EEEEEc---CCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCC---cEEEEEEEEecCceeecC
Q 001567 33 LLLIAS---PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIG 106 (1052)
Q Consensus 33 llA~~s---d~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d---g~l~i~~l~~~~~~~~~~ 106 (1052)
++++-+ +..|++|+.+.....+... +-+.+.+...-++|+|+++.|.++-.+ |.+.-|.++.....+...
T Consensus 6 YiGtyT~~~s~gI~v~~ld~~~g~l~~~----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l 81 (346)
T COG2706 6 YIGTYTKRESQGIYVFNLDTKTGELSLL----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL 81 (346)
T ss_pred EEeeecccCCCceEEEEEeCcccccchh----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe
Confidence 455555 5679999987433333222 223344666789999999998887654 778888887432222211
Q ss_pred CCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEec-CCcEEEEeccCccccceeecccCCCCccceeeccc
Q 001567 107 GKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHF 185 (1052)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~-dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s 185 (1052)
+ +..+.+....-.|+..++..++++.- .|.|.++..+.. +.... .+..+.
T Consensus 82 n-----------------~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d--G~l~~--------~v~~~~-- 132 (346)
T COG2706 82 N-----------------RQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD--GSLQP--------VVQVVK-- 132 (346)
T ss_pred e-----------------ccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccC--Ccccc--------ceeeee--
Confidence 1 11112221122355666777777654 456666554322 11100 000000
Q ss_pred CCCcceeecCCCCeeeccc-cCCCccEEEEEecCCcceEEEEeeCCcEEEEEec-CCceeeeeeccccee-------cCC
Q 001567 186 PSNGLASVDTSGAFVSDHK-FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE-------LGS 256 (1052)
Q Consensus 186 ~~~~l~s~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~-d~~i~~w~~~~~~~~-------~gh 256 (1052)
+.+. .+. ...... ..++.++|||+++++..- ...+.+++...+... +.-
T Consensus 133 ---------h~g~---~p~~rQ~~~h----------~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G 190 (346)
T COG2706 133 ---------HTGS---GPHERQESPH----------VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG 190 (346)
T ss_pred ---------cCCC---CCCccccCCc----------cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC
Confidence 0000 000 000011 123567899988776542 223555555433221 111
Q ss_pred CCeEEEEEcCCCCEEEEEe-eCCeEEEEecCCCCceeEEEEeec-CCCCCCCCCCeeEEEECCCCCEEEEEEcC-CcEEE
Q 001567 257 GDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYD-WGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTV 333 (1052)
Q Consensus 257 ~~~v~va~spd~~~lAsgs-~Dg~V~vwd~~~~~~~~~~l~~~~-~~~~~~h~g~V~~l~~SpDg~~Lasg~~D-g~v~v 333 (1052)
.++-.++|+|++++.-+-+ -+++|.+|..+.....+..++... .+..-.-.....+|..||||++|.++.+- ..|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 2333899999999876544 589999999987434344433321 11111234567889999999999987652 36777
Q ss_pred EEcC
Q 001567 334 WSVS 337 (1052)
Q Consensus 334 Wd~~ 337 (1052)
+.+.
T Consensus 271 f~V~ 274 (346)
T COG2706 271 FSVD 274 (346)
T ss_pred EEEc
Confidence 7663
No 268
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=0.0001 Score=83.66 Aligned_cols=115 Identities=15% Similarity=0.256 Sum_probs=75.2
Q ss_pred CCCccEEEEEecCCcceEEEEeeCCcEEEEEecCC--ceeeeeeccccee-cCCCCeE-EEEEcCCCCEEEEEeeC---C
Q 001567 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK--GLKLAEFIKIDKE-LGSGDAV-CASIAPEQQILAVGTRR---G 278 (1052)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~--~i~~w~~~~~~~~-~gh~~~v-~va~spd~~~lAsgs~D---g 278 (1052)
.+.++|.++.| +++|+-+++..+-. .+.+.|..-.-.. .+ .++- ++-|||.|++|+.++-+ |
T Consensus 268 ~k~GPVhdv~W----------~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G 336 (566)
T KOG2315|consen 268 LKEGPVHDVTW----------SPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPG 336 (566)
T ss_pred CCCCCceEEEE----------CCCCCEEEEEEecccceEEEEcCCCCEeEeCC-CCCccceEECCCCCEEEEeecCCCCC
Confidence 34567777776 45555444333322 2223333211111 12 2344 89999999999887754 8
Q ss_pred eEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEE------cCCcEEEEEcCCCeEE
Q 001567 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW------KSRGLTVWSVSGCRLM 342 (1052)
Q Consensus 279 ~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~------~Dg~v~vWd~~~~~l~ 342 (1052)
.|.|||+.+ -+++..+.. ..-+-+.|+|||+++.|+. -|++++||+..|..+.
T Consensus 337 ~mEvwDv~n-~K~i~~~~a----------~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 337 DMEVWDVPN-RKLIAKFKA----------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred ceEEEeccc-hhhcccccc----------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 999999987 666665554 2235679999999998875 3799999999987643
No 269
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.20 E-value=3e-06 Score=63.19 Aligned_cols=38 Identities=29% Similarity=0.619 Sum_probs=34.9
Q ss_pred ceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 001567 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1052)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd 335 (1052)
++++++.+ |.++|++|+|+|++.+||+|+.|+.|++||
T Consensus 2 ~~~~~~~~--------h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRG--------HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEES--------SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcC--------CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45667777 999999999999999999999999999997
No 270
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=6.3e-05 Score=81.85 Aligned_cols=105 Identities=13% Similarity=0.213 Sum_probs=87.5
Q ss_pred CcEEEEEecCCceeeeeeccccee----cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEE-EEeecCCCC
Q 001567 230 GQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRT-VSLYDWGYS 303 (1052)
Q Consensus 230 G~~~~~~~~d~~i~~w~~~~~~~~----~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~-l~~~~~~~~ 303 (1052)
.+.++++..-+.++++|...+.+- .--+.++ ++..-|++.+|.+|..-|.+..||++. +.+... +++
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~-~kl~g~~~kg------ 288 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG-GKLLGCGLKG------ 288 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccC-ceeeccccCC------
Confidence 677888888888999998755431 2235667 999999999999999999999999987 655544 666
Q ss_pred CCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEE
Q 001567 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS 343 (1052)
Q Consensus 304 ~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~ 343 (1052)
-+|.|++|.-.|.+.++|+++-|+.|+|+|+.+.+++.
T Consensus 289 --~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 289 --ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred --ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 79999999999999999999999999999999866543
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.10 E-value=0.0038 Score=69.62 Aligned_cols=124 Identities=11% Similarity=0.218 Sum_probs=83.0
Q ss_pred eCCcEEEEEecCC-ceeeeeecccc--eecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCC
Q 001567 228 SNGQLMSCSVSKK-GLKLAEFIKID--KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (1052)
Q Consensus 228 ~dG~~~~~~~~d~-~i~~w~~~~~~--~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~ 303 (1052)
.|+.-.+.+..|+ .+-+.+...++ +..+.-+.+ .+..+|+|+.++++-..+.+-+.|+++ +. .+.+..
T Consensus 369 ~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-gn-v~~idk------ 440 (668)
T COG4946 369 VDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GN-VRLIDK------ 440 (668)
T ss_pred cCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CC-eeEecc------
Confidence 3444444444444 23344444333 123334566 999999999999999889999999987 43 333332
Q ss_pred CCCCCCeeEEEECCCCCEEEEEEcCC----cEEEEEcCCCeEEEEecccccCceeeeeEcCCC
Q 001567 304 MDDTGPVSCIAWTPDNSAFAVGWKSR----GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1052)
Q Consensus 304 ~~h~g~V~~l~~SpDg~~Lasg~~Dg----~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (1052)
...+-|+..+|+|+++++|-+--+| .|+++|+.+++....-.. ++.=.+++|.|++
T Consensus 441 -S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~--ta~DfsPaFD~d~ 500 (668)
T COG4946 441 -SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP--TAYDFSPAFDPDG 500 (668)
T ss_pred -cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC--cccccCcccCCCC
Confidence 1467899999999999999876554 799999999886653322 1223467788877
No 272
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.10 E-value=0.0043 Score=70.06 Aligned_cols=276 Identities=13% Similarity=0.076 Sum_probs=149.2
Q ss_pred CcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeC----------CcEEEEEEEEecCceeecC-CC
Q 001567 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SLYLHIFKVQITEKSIQIG-GK 108 (1052)
Q Consensus 40 ~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~----------dg~l~i~~l~~~~~~~~~~-~~ 108 (1052)
++|.+-|.. ....++...-. +.+. .+ +||||+.|.+++. ++.|.+||+.+.+..-.+. +.
T Consensus 27 ~~v~ViD~~-~~~v~g~i~~G------~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGE-AGRVLGMTDGG------FLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECC-CCEEEEEEEcc------CCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 789999986 54445544311 1222 24 9999999999877 7899999998665321110 00
Q ss_pred CCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEec--CCcEEEEeccCccccceeecccCCCCccceeecccC
Q 001567 109 QPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFP 186 (1052)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~--dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~ 186 (1052)
.+ +. ..+.......+++|++.+++... +..|.+++..... -. ..++. .
T Consensus 98 ~p------------~~---~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k--vv------------~ei~v-p 147 (352)
T TIGR02658 98 GP------------RF---LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA--FV------------RMMDV-P 147 (352)
T ss_pred Cc------------hh---hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc--EE------------EEEeC-C
Confidence 00 00 01112235578888888887753 4566665433221 11 11111 0
Q ss_pred CCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecC-CceeeeeecccceecCCCCeE--EEE
Q 001567 187 SNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDKELGSGDAV--CAS 263 (1052)
Q Consensus 187 ~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d-~~i~~w~~~~~~~~~gh~~~v--~va 263 (1052)
+. ...|...-..+.+.+.||+.+..+.++ +....-. .....+-.+++ .-.
T Consensus 148 ~~------------------------~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~---~~vf~~~~~~v~~rP~ 200 (352)
T TIGR02658 148 DC------------------------YHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP---TEVFHPEDEYLINHPA 200 (352)
T ss_pred CC------------------------cEEEEecCCccEEEeecCceEEEEecCCCceEEee---eeeecCCccccccCCc
Confidence 00 001212222334556778776655533 2211100 00000111222 114
Q ss_pred EcC-CCCEEEEEeeCCeEEEEecCCCC----ceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEc----------C
Q 001567 264 IAP-EQQILAVGTRRGVVELYDLAESA----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK----------S 328 (1052)
Q Consensus 264 ~sp-d~~~lAsgs~Dg~V~vwd~~~~~----~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~----------D 328 (1052)
|++ +|+++-+... |+|.+-|+.... ..+..+..... ...-..+...-++++|||+.+.++.. .
T Consensus 201 ~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~-~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 201 YSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEK-ADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred eEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccc-ccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence 456 8888777665 999999975421 11222111000 00014455566999999998888531 2
Q ss_pred CcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCcc-cee--eee--eeeEEecCCceEEEEe
Q 001567 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLM--SGT--SMMQWDEYGYRLYAIE 389 (1052)
Q Consensus 329 g~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~-~l~--sg~--~~~~W~~~~~~l~~~~ 389 (1052)
+.|.++|..+++.+..+.-. ..+..++++|++ + .+. .+. .+.+.|..+++.+...
T Consensus 279 ~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dg----kp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 279 RFLFVVDAKTGKRLRKIELG--HEIDSINVSQDA----KPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CEEEEEECCCCeEEEEEeCC--CceeeEEECCCC----CeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 47999999999999888753 468889999998 4 222 211 4666777776666554
No 273
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.09 E-value=1.4e-05 Score=100.43 Aligned_cols=182 Identities=10% Similarity=0.174 Sum_probs=129.4
Q ss_pred CCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEE
Q 001567 255 GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (1052)
Q Consensus 255 gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~v 333 (1052)
-+-..| |+.=+|...+-.+|+.||.|++|.... +..+.+++. .-...|+.+.|+.+|+.+..+..||.+.+
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~-~~~v~~~rt-------~g~s~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGH-GQQVVCFRT-------AGNSRVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccC-CCeEEEeec-------cCcchhhhhhhcccCCceeeeccCCceee
Confidence 345667 888889999999999999999999876 666665553 12478999999999999999999999999
Q ss_pred EEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeee------eeeeEEecC-CceEEEEecCCcccE--EEEec-cc
Q 001567 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG------TSMMQWDEY-GYRLYAIEEGSSERV--LIFSF-GK 403 (1052)
Q Consensus 334 Wd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg------~~~~~W~~~-~~~l~~~~~~~~~~v--~~~s~-~k 403 (1052)
|.+. .+.+.+-+.| ....+..+|-... +++. ..+.+||.. .+..+.+...|.+.. .++.| .+
T Consensus 2278 ~q~~-pk~~~s~qch-nk~~~Df~Fi~s~------~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q 2349 (2439)
T KOG1064|consen 2278 WQAS-PKPYTSWQCH-NKALSDFRFIGSL------LATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ 2349 (2439)
T ss_pred cccC-CcceeccccC-Cccccceeeeehh------hhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce
Confidence 9987 4455555555 4444444443211 1111 167789852 222333335566555 55555 67
Q ss_pred eeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccC
Q 001567 404 CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (1052)
Q Consensus 404 ~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s 482 (1052)
.++||+.+|.+++||+.+... -|.++. +. ...++++|+..|.+ +|++..
T Consensus 2350 llisggr~G~v~l~D~rqrql-------------------------~h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQRQL-------------------------RHTFQA----LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred EEEecCCcCcEEEeehHHHHH-------------------------HHHhhh----hh-hhheeeccCcccceEEEEccc
Confidence 888999999999999876544 244444 44 67799999999999 999865
No 274
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.05 E-value=0.00047 Score=71.66 Aligned_cols=202 Identities=9% Similarity=0.025 Sum_probs=117.0
Q ss_pred ceEEEcCCc-----cEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeE
Q 001567 71 LQAVWSPDT-----KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1052)
Q Consensus 71 ~~v~wSPDg-----~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~l 145 (1052)
..+.|.|-+ -+||.+++.|.+.+|...+...-.+.-.... ..+ .+ +...+-....+
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~sn-----n~v--------~~------~~r~cd~~~~~ 131 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSN-----NDV--------TL------VKRYCDLKFPL 131 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccc-----cch--------hh------hhhhcccccce
Confidence 356677743 4799999999999999875543222100000 000 00 11111123457
Q ss_pred EEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEE
Q 001567 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (1052)
Q Consensus 146 lv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (1052)
.+++.|.+++.+..++...+... ......+.+ +.
T Consensus 132 ~i~sndht~k~~~~~~~s~~~~~------------------------------------h~~~~~~ns----------~~ 165 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSNKFAV------------------------------------HNQNLTQNS----------LH 165 (344)
T ss_pred eeccCCcceeEEEEecCccccee------------------------------------eccccceee----------eE
Confidence 77777877777766655433210 000011233 44
Q ss_pred EeeCCcEEEEEecCCceeeeeecccc----e--ecCC-CCeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEee
Q 001567 226 LYSNGQLMSCSVSKKGLKLAEFIKID----K--ELGS-GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1052)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~~~~----~--~~gh-~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~ 298 (1052)
+++|+++.++.++...+-.+.+.... + .... .+..|.+||.....+|+|.+||++.|||++..+.+..+...
T Consensus 166 ~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss- 244 (344)
T KOG4532|consen 166 YSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS- 244 (344)
T ss_pred EcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc-
Confidence 57777777766655555444332111 0 1222 34459999999999999999999999999873433333222
Q ss_pred cCCCCCCCCCCeeEEEECCCCC--EEEEEEcCCcEEEEEcCCCeE
Q 001567 299 DWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGCRL 341 (1052)
Q Consensus 299 ~~~~~~~h~g~V~~l~~SpDg~--~Lasg~~Dg~v~vWd~~~~~l 341 (1052)
..+.|.|.+..+.|||-|. +|.-.-.-+.+.|-|+.+++-
T Consensus 245 ---trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 245 ---TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred ---cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 1124899999999998554 333333336778888876653
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.04 E-value=0.0003 Score=73.06 Aligned_cols=198 Identities=11% Similarity=-0.003 Sum_probs=123.5
Q ss_pred EEEEecCCceeeeeecccce-ecCCCCe--E-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCC
Q 001567 233 MSCSVSKKGLKLAEFIKIDK-ELGSGDA--V-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG 308 (1052)
Q Consensus 233 ~~~~~~d~~i~~w~~~~~~~-~~gh~~~--v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g 308 (1052)
+..++.|.++++.+...... ..-|... + .+++++|++++++-+....|-.|.+++.+..+......+ -+.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~------t~D 204 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP------TSD 204 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc------cCC
Confidence 34445666666554432211 1223332 4 899999999999999999999999998665444332211 234
Q ss_pred CeeEEEECCCCCEEEEEEcCCcEEEEEcCCCe-EE---EEecccccCceeeeeEcCCCCCCccceeeeeeeeEEecCCce
Q 001567 309 PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LM---STIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYR 384 (1052)
Q Consensus 309 ~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~-l~---~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~ 384 (1052)
.=.+.+||.....+|++..||++.|||+.... ++ .+-+.|+.+.+..+.|+|.|. . .
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~--l-----------------D 265 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL--L-----------------D 265 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc--c-----------------e
Confidence 45789999999999999999999999996532 22 233456678888888887651 0 1
Q ss_pred EEEEecCCcccEEEEeccceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccC-cccccCCCc-EEEEEEcc
Q 001567 385 LYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWP-VQHVAASK 462 (1052)
Q Consensus 385 l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p-~~~~~h~~~-V~~va~Sp 462 (1052)
|+.. ..|.+.+..++. ....+. +.+.+| .....|+.. |....|+.
T Consensus 266 LLf~-sEhfs~~hv~D~------------------R~~~~~--------------q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 266 LLFI-SEHFSRVHVVDT------------------RNYVNH--------------QVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred EEEE-ecCcceEEEEEc------------------ccCcee--------------eEEecCccccccccccccccccccC
Confidence 1111 123333322221 111110 111111 233445444 88899999
Q ss_pred CCCEEEEEeCCceEEEEccCCcEEEe
Q 001567 463 DGMFLAVAGLHGLILYDIRQKKWRVF 488 (1052)
Q Consensus 463 dG~~lavag~dG~ilwd~~s~~w~~f 488 (1052)
+|.-+-+++++..+-|++.++.=..|
T Consensus 313 ~n~s~~v~~e~~~ae~ni~srsR~~f 338 (344)
T KOG4532|consen 313 ENESNDVKNELQGAEYNILSRSRFSF 338 (344)
T ss_pred CCcccccccchhhheeeccccceecc
Confidence 99999999998888899887765555
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.04 E-value=0.00016 Score=75.97 Aligned_cols=204 Identities=11% Similarity=0.086 Sum_probs=122.7
Q ss_pred cceEEEcC---Ccc-EEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeE
Q 001567 70 NLQAVWSP---DTK-LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (1052)
Q Consensus 70 ~~~v~wSP---Dg~-~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~l 145 (1052)
...+.|+. ||. .++.+-+.|.|.+|..+.........+-... . +.....--..+...+..+
T Consensus 72 ~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~-------k--------i~~~~~lslD~~~~~~~i 136 (339)
T KOG0280|consen 72 EFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK-------K--------ISVVEALSLDISTSGTKI 136 (339)
T ss_pred cceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchh-------h--------hhheeeeEEEeeccCceE
Confidence 34677764 455 6777778888999888755443332211100 0 000001112345557778
Q ss_pred EEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEE
Q 001567 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (1052)
Q Consensus 146 lv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 225 (1052)
+++.++|.+....-+. .... ....|..|...+...+|+.
T Consensus 137 ~vs~s~G~~~~v~~t~---~~le-------------------------------~vq~wk~He~E~Wta~f~~------- 175 (339)
T KOG0280|consen 137 FVSDSRGSISGVYETE---MVLE-------------------------------KVQTWKVHEFEAWTAKFSD------- 175 (339)
T ss_pred EEEcCCCcEEEEecce---eeee-------------------------------ecccccccceeeeeeeccc-------
Confidence 8888899887432221 1110 0012334444454444422
Q ss_pred EeeCCcEEEEEecCCceeeeeeccccee-----cCCCCeE-EEEEcC-CCCEEEEEeeCCeEEEEecCCCCceeEEEEee
Q 001567 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1052)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~~~~~~-----~gh~~~v-~va~sp-d~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~ 298 (1052)
-+-.++.+|++|+.+.-||...++.+ +-|...| |+.=|| ++.+||+|+.|-.|++||.+.-++++..-.
T Consensus 176 --~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-- 251 (339)
T KOG0280|consen 176 --KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-- 251 (339)
T ss_pred --CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--
Confidence 23367889999999999998844433 3477777 776665 678999999999999999986355544222
Q ss_pred cCCCCCCCCCCeeEEEECCCC-CEEEEEEcCCcEEEEEcCCCe
Q 001567 299 DWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCR 340 (1052)
Q Consensus 299 ~~~~~~~h~g~V~~l~~SpDg-~~Lasg~~Dg~v~vWd~~~~~ 340 (1052)
-.|+|+.+.++|-- ..+..+..-++.+|-+...+.
T Consensus 252 -------v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 252 -------VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred -------cccceEEEEecchhhhHHHHHHHhcCceEEEecccc
Confidence 35899999999942 233334445678888876543
No 277
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=0.0014 Score=74.52 Aligned_cols=302 Identities=16% Similarity=0.227 Sum_probs=167.8
Q ss_pred EEEEeeCCcEEEEEecCCceeeeeeccccee--cCCCCeEEEEEcCCCCEEEEEee-----------CCeEEEEecCCCC
Q 001567 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTR-----------RGVVELYDLAESA 289 (1052)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~gh~~~v~va~spd~~~lAsgs~-----------Dg~V~vwd~~~~~ 289 (1052)
++.+||-|.++++ .....+.+|.+....+. -.|.+.--+.|||..++|++=+. ...+.|||+.+ |
T Consensus 215 yv~wSP~GTYL~t-~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t-G 292 (698)
T KOG2314|consen 215 YVRWSPKGTYLVT-FHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT-G 292 (698)
T ss_pred eEEecCCceEEEE-EeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc-c
Confidence 4667888887765 44556788887765433 34554449999999999998652 25789999998 8
Q ss_pred ceeEEEEeecCCCCCCCCCCe-eEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEE--EecccccCceeeeeEcCCCCCCc
Q 001567 290 SLIRTVSLYDWGYSMDDTGPV-SCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS--TIRQISLSSISSPIVKPNQDCKY 366 (1052)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~g~V-~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~--tl~~~~~~~v~s~~~sp~~~~~~ 366 (1052)
...+.+...+ ....+ .-..||.|++++|--.. .+|.|++...-.++- +++ -+.|....|+|.+
T Consensus 293 ~lkrsF~~~~------~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslk---i~gIr~FswsP~~---- 358 (698)
T KOG2314|consen 293 LLKRSFPVIK------SPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLK---ISGIRDFSWSPTS---- 358 (698)
T ss_pred chhcceeccC------CCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccC---CccccCcccCCCc----
Confidence 7777666521 11112 34689999999998877 589999987643321 221 2345556677765
Q ss_pred cceeeeeeeeEEecCCceEEEEecCCcccEEEEeccceeeeeccCC--cee-eeEeeecCceEEEEecC-Ccc-------
Q 001567 367 EPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSG--MTY-ARQVIYGEDRLLVVQSE-DTD------- 435 (1052)
Q Consensus 367 ~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~--~v~-~w~~~~~~~~l~~~~~~-~~~------- 435 (1052)
..++ .|.+++...-... .+..++-.+.+-+.+.-+ .++ .|. ...+++.+.-.. ...
T Consensus 359 ~llA------Ywtpe~~~~parv-----tL~evPs~~~iRt~nlfnVsDckLhWQ--k~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 359 NLLA------YWTPETNNIPARV-----TLMEVPSKREIRTKNLFNVSDCKLHWQ--KSGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred ceEE------EEcccccCCcceE-----EEEecCccceeeeccceeeeccEEEec--cCCcEEEEEEEeeccccccceEe
Confidence 3333 6776654321110 111221122221111000 000 121 223333322110 000
Q ss_pred ---hheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeC---CceE-EEEcc--CCcEEEecCccceeeeEEEEEEEe-
Q 001567 436 ---ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL---HGLI-LYDIR--QKKWRVFGDITQEQKIQSKGLLWL- 505 (1052)
Q Consensus 436 ---~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~---dG~i-lwd~~--s~~w~~f~~~~~e~~~~v~gl~W~- 505 (1052)
.+....-++|.....-..+|-..+|-|.|..+|+-+. ..++ +|.+. .++|++..... + ..+..+.|.
T Consensus 426 n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k-~~~N~vfwsP 502 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--K-KFANTVFWSP 502 (698)
T ss_pred eEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--c-cccceEEEcC
Confidence 1112223355544455667888999999998886543 2456 88775 45565433211 1 235567785
Q ss_pred -CCEEEEEEEecCCCeEEEEEeeCC--CCCCcceeEEeecCCccEEEEeeCCEEEEEE
Q 001567 506 -GKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTY 560 (1052)
Q Consensus 506 -~~~li~~~~~~~~~~~elrly~~~--~ld~~~~l~~~~~~~~~~~~s~~~~~llv~~ 560 (1052)
|.++++++.. +..+.+.+|+.+ .+...... .| ....-+--+|.|.|+++.+
T Consensus 503 kG~fvvva~l~--s~~g~l~F~D~~~a~~k~~~~~-eh-~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 503 KGRFVVVAALV--SRRGDLEFYDTDYADLKDTASP-EH-FAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred CCcEEEEEEec--ccccceEEEecchhhhhhccCc-cc-cccccceECCCCCEEEEee
Confidence 7788888554 356778899875 11111111 11 1122344578889988844
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.02 E-value=0.016 Score=64.93 Aligned_cols=145 Identities=19% Similarity=0.263 Sum_probs=103.8
Q ss_pred CCcEEEEEecCCc--eeeeeecccceecCCCCeE-EEEEcCCCCEEEEEeeCC-eEEEEecCCCCceeEEEEeecCCCCC
Q 001567 229 NGQLMSCSVSKKG--LKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRG-VVELYDLAESASLIRTVSLYDWGYSM 304 (1052)
Q Consensus 229 dG~~~~~~~~d~~--i~~w~~~~~~~~~gh~~~v-~va~spd~~~lAsgs~Dg-~V~vwd~~~~~~~~~~l~~~~~~~~~ 304 (1052)
+|.+++..+.... .+.|+...- ..+|...| -..+..++.-++.|..|| .+-|||.+. + ....+..
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~i--qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~-~-e~kr~e~------- 399 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSI--QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG-G-EVKRIEK------- 399 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeE--EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCC-c-eEEEeeC-------
Confidence 4555555443321 234544332 25777788 888888888999999999 899999875 4 3445554
Q ss_pred CCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeee----e---eeeE
Q 001567 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG----T---SMMQ 377 (1052)
Q Consensus 305 ~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg----~---~~~~ 377 (1052)
.-|.|.++..+|||+.++++-....+.+.|+.++.... +.....+-++...+||++ +.++-+ . .+++
T Consensus 400 -~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~-idkS~~~lItdf~~~~ns----r~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 400 -DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL-IDKSEYGLITDFDWHPNS----RWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred -CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE-ecccccceeEEEEEcCCc----eeEEEecCcceeeeeEEE
Confidence 67899999999999999999988888899998875332 222224568888999998 655533 2 7889
Q ss_pred EecCCceEEEEec
Q 001567 378 WDEYGYRLYAIEE 390 (1052)
Q Consensus 378 W~~~~~~l~~~~~ 390 (1052)
++..+++...+..
T Consensus 474 ydm~~~Kiy~vTT 486 (668)
T COG4946 474 YDMDGGKIYDVTT 486 (668)
T ss_pred EecCCCeEEEecC
Confidence 9999988877653
No 279
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.02 E-value=0.00052 Score=80.38 Aligned_cols=104 Identities=8% Similarity=0.014 Sum_probs=59.3
Q ss_pred EEeeCCcEEEEEecC-Cceee--eeecccce--ecCCCCeEEEEEcCCCCEEEEEeeC---------CeEEEEecCCCCc
Q 001567 225 VLYSNGQLMSCSVSK-KGLKL--AEFIKIDK--ELGSGDAVCASIAPEQQILAVGTRR---------GVVELYDLAESAS 290 (1052)
Q Consensus 225 ~~s~dG~~~~~~~~d-~~i~~--w~~~~~~~--~~gh~~~v~va~spd~~~lAsgs~D---------g~V~vwd~~~~~~ 290 (1052)
.++|||+.++..++. +...+ .+...++. .... +....+|||||+.||..+.. ..|.+.|++. +.
T Consensus 283 ~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~ 360 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY 360 (419)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC
Confidence 468888766665543 33333 34433322 1111 11134899999999877654 2566777665 33
Q ss_pred eeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCC---cEEEEEcCCCe
Q 001567 291 LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR---GLTVWSVSGCR 340 (1052)
Q Consensus 291 ~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg---~v~vWd~~~~~ 340 (1052)
.+.+.. .+.....+|||||+.++....++ .+.+.++.|..
T Consensus 361 -~~~LT~---------~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 361 -IRRLTA---------NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred -eEECCC---------CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 333332 12334588999999887766443 35566776653
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.01 E-value=4.1e-05 Score=83.80 Aligned_cols=98 Identities=17% Similarity=0.278 Sum_probs=75.6
Q ss_pred Cceeeeeeccc--ceecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEEC
Q 001567 240 KGLKLAEFIKI--DKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT 316 (1052)
Q Consensus 240 ~~i~~w~~~~~--~~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~S 316 (1052)
..+.+|....+ ....||-.-+ .|+|+||++.|.++..|..|||=.... .-.+..+-. ||+.-|..++.-
T Consensus 132 ~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~Iesfcl-------GH~eFVS~isl~ 203 (390)
T KOG3914|consen 132 YSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCL-------GHKEFVSTISLT 203 (390)
T ss_pred eeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhcc-------ccHhheeeeeec
Confidence 34445554422 2237999999 999999999999999999999977654 333333332 599999999987
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCeEEEEec
Q 001567 317 PDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1052)
Q Consensus 317 pDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~ 346 (1052)
+ ++.|+|||.|+++++||+.+|+++.++.
T Consensus 204 ~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 204 D-NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred c-CceeeecCCCCcEEEEecccCCcccccc
Confidence 6 4679999999999999999998876654
No 281
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=0.00027 Score=81.80 Aligned_cols=147 Identities=13% Similarity=0.168 Sum_probs=96.9
Q ss_pred CCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCce----e----eeeecccceecCCCCeE-EEEEcCCCCEEEEEee
Q 001567 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL----K----LAEFIKIDKELGSGDAV-CASIAPEQQILAVGTR 276 (1052)
Q Consensus 206 ~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i----~----~w~~~~~~~~~gh~~~v-~va~spd~~~lAsgs~ 276 (1052)
+......+++|+...++.++...||.+-+.--+..+. + .-+....+.+.||...| .+.||.+.+.|-+...
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 4555677777766666666666666544332221111 0 00111122337999999 9999999999999999
Q ss_pred CCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEE-EecccccCceee
Q 001567 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMS-TIRQISLSSISS 355 (1052)
Q Consensus 277 Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~-tl~~~~~~~v~s 355 (1052)
+|-|.||-+-. ++.....-.. .....|.+++|..||+.++...+||.|.|=++.|.+... .+++.. .+.
T Consensus 92 ~GlIiVWmlyk-gsW~EEMiNn------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~---l~h 161 (1189)
T KOG2041|consen 92 SGLIIVWMLYK-GSWCEEMINN------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL---LAH 161 (1189)
T ss_pred CceEEEEeeec-ccHHHHHhhC------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe---ccc
Confidence 99999999865 4322211110 145679999999999999999999999999999887653 344321 234
Q ss_pred eeEcCCC
Q 001567 356 PIVKPNQ 362 (1052)
Q Consensus 356 ~~~sp~~ 362 (1052)
+.+++|.
T Consensus 162 v~ws~D~ 168 (1189)
T KOG2041|consen 162 VLWSEDL 168 (1189)
T ss_pred eeecccH
Confidence 5666665
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.00 E-value=0.0019 Score=68.51 Aligned_cols=195 Identities=16% Similarity=0.200 Sum_probs=99.4
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCC------CCEEEEEEcCCcEEEE
Q 001567 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD------NSAFAVGWKSRGLTVW 334 (1052)
Q Consensus 261 ~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpD------g~~Lasg~~Dg~v~vW 334 (1052)
.++||||+.+||.+...|+|++||+. +..+..+..... ....-..+|..|.|-+- ..-|.+-..+|.++=+
T Consensus 48 kl~WSpD~tlLa~a~S~G~i~vfdl~--g~~lf~I~p~~~-~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 48 KLAWSPDCTLLAYAESTGTIRVFDLM--GSELFVIPPAMS-FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred EEEECCCCcEEEEEcCCCeEEEEecc--cceeEEcCcccc-cCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 79999999999999999999999986 444555544210 11123456777777542 1234444445666665
Q ss_pred EcCC-----CeEEEEe--cccccCceeeeeEcCCCCCCccceeeeeeeeEEecCCceEEEEecCCcccEEEEeccceeee
Q 001567 335 SVSG-----CRLMSTI--RQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLN 407 (1052)
Q Consensus 335 d~~~-----~~l~~tl--~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s 407 (1052)
-+.. .+..+++ ..|....|+++.++|.. +.+ .+...+... +. .+
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h----~LL-----------------lVgG~~~~~-------~~-~s 175 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH----RLL-----------------LVGGCEQNQ-------DG-MS 175 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCC----CEE-----------------EEeccCCCC-------Cc-cc
Confidence 5421 1222222 22223344444444442 222 221111000 00 01
Q ss_pred eccCCceeeeEeeecCceEEEEecC-Ccch-h--eeeeeccCc--cc---ccCCCcEEEEEEccCCCEEEEEeCCceE-E
Q 001567 408 RGVSGMTYARQVIYGEDRLLVVQSE-DTDE-L--KILHLNLPV--SY---ISQNWPVQHVAASKDGMFLAVAGLHGLI-L 477 (1052)
Q Consensus 408 ~s~d~~v~~w~~~~~~~~l~~~~~~-~~~~-~--~w~~~~~p~--~~---~~h~~~V~~va~SpdG~~lavag~dG~i-l 477 (1052)
...+..+..|.++.+.-.-..+... +... . .+...+++. -+ ......|..+++||||+.||+...+|.+ +
T Consensus 176 ~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsL 255 (282)
T PF15492_consen 176 KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSL 255 (282)
T ss_pred cccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEE
Confidence 1112223445555443332222211 1100 0 011111121 11 1234568899999999999999999999 9
Q ss_pred EEccC----CcEEE
Q 001567 478 YDIRQ----KKWRV 487 (1052)
Q Consensus 478 wd~~s----~~w~~ 487 (1052)
|++-+ ++|+.
T Consensus 256 W~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 256 WEIPSLRLQRSWKQ 269 (282)
T ss_pred EecCcchhhcccch
Confidence 99865 45653
No 283
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.94 E-value=0.00026 Score=75.93 Aligned_cols=79 Identities=18% Similarity=0.332 Sum_probs=68.9
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~ 332 (1052)
.+|.+.+ |.+|.|..+++.+|..|..|.+||+.-.......+.+ |.+.|..+..-+--+.+.++++||.|-
T Consensus 194 ~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g--------h~~kV~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 194 NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG--------HNDKVQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc--------chhhhhhhhhhhhheeeeeccCCCeEE
Confidence 6899999 9999999999999999999999999653344455566 999999999888889999999999999
Q ss_pred EEEcCCCe
Q 001567 333 VWSVSGCR 340 (1052)
Q Consensus 333 vWd~~~~~ 340 (1052)
+|+..-.+
T Consensus 266 ~w~mn~~r 273 (404)
T KOG1409|consen 266 VWNMNVKR 273 (404)
T ss_pred EEecccee
Confidence 99997654
No 284
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.88 E-value=0.0076 Score=69.99 Aligned_cols=249 Identities=19% Similarity=0.163 Sum_probs=132.8
Q ss_pred CCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC--CCCEEEEEEcCCcEEEEEcCCCeEEEE
Q 001567 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMST 344 (1052)
Q Consensus 267 d~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp--Dg~~Lasg~~Dg~v~vWd~~~~~l~~t 344 (1052)
++..+.+|+.||.+..+|.++ ++.+-.... .+.+. -+| ++..+..+..++.+..||..+++.+..
T Consensus 104 ~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~---------~~~~~---~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~ 170 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAED-GKELWRAKL---------SSEVL---SPPLVANGLVVVRTNDGRLTALDAATGERLWT 170 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCC-CcEeeeecc---------Cceee---cCCEEECCEEEEECCCCeEEEEEcCCCceeeE
Confidence 467788889999999999887 665543332 12222 122 345667777889999999988887766
Q ss_pred ecccccC----ceeeeeEcCCCCCCccceeee--eeeeEEecCCceEEEEec-CCc------ccEEEE--ec---cceee
Q 001567 345 IRQISLS----SISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEE-GSS------ERVLIF--SF---GKCCL 406 (1052)
Q Consensus 345 l~~~~~~----~v~s~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~-~~~------~~v~~~--s~---~k~~~ 406 (1052)
....... ...++.+. ++ ..++.. ..+..+++.+++..-... +.. .++..+ ++ +..+.
T Consensus 171 ~~~~~~~~~~~~~~sp~~~-~~----~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy 245 (377)
T TIGR03300 171 YSRVTPALTLRGSASPVIA-DG----GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY 245 (377)
T ss_pred EccCCCceeecCCCCCEEE-CC----EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence 5432110 00111111 11 222211 155566666554332211 000 000000 01 33444
Q ss_pred eeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCc-
Q 001567 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK- 484 (1052)
Q Consensus 407 s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~- 484 (1052)
.++.++.+..++..+++ ..|..- . .... ....++..+.+++.+|.+ .+|..+++
T Consensus 246 ~~~~~g~l~a~d~~tG~-------------~~W~~~-~----~~~~------~p~~~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 246 AVSYQGRVAALDLRSGR-------------VLWKRD-A----SSYQ------GPAVDDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred EEEcCCEEEEEECCCCc-------------EEEeec-c----CCcc------CceEeCCEEEEECCCCeEEEEECCCCcE
Confidence 55556666555544332 234331 0 0111 122356788888899999 99998875
Q ss_pred -EEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCCCCCCcceeEEeecCCccEEEE--eeCCEEEEEEc
Q 001567 485 -WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD--VYEDYILVTYR 561 (1052)
Q Consensus 485 -w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~elrly~~~~ld~~~~l~~~~~~~~~~~~s--~~~~~llv~~~ 561 (1052)
|+.-.. ... ......-.++.++++ +.+..|.+++.. +..++++.++...++..+ ..++.|++.+.
T Consensus 302 ~W~~~~~--~~~--~~ssp~i~g~~l~~~-----~~~G~l~~~d~~---tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 302 LWKNDEL--KYR--QLTAPAVVGGYLVVG-----DFEGYLHWLSRE---DGSFVARLKTDGSGIASPPVVVGDGLLVQTR 369 (377)
T ss_pred EEccccc--cCC--ccccCEEECCEEEEE-----eCCCEEEEEECC---CCCEEEEEEcCCCccccCCEEECCEEEEEeC
Confidence 542110 000 112223356777766 233567777653 446777777655444333 35678888899
Q ss_pred CCeEEEEE
Q 001567 562 PFDVHIFH 569 (1052)
Q Consensus 562 d~~i~l~~ 569 (1052)
||.+..|+
T Consensus 370 dG~l~~~~ 377 (377)
T TIGR03300 370 DGDLYAFR 377 (377)
T ss_pred CceEEEeC
Confidence 99988763
No 285
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.86 E-value=7.5e-05 Score=94.34 Aligned_cols=187 Identities=16% Similarity=0.190 Sum_probs=121.6
Q ss_pred cceEEEEeec--CCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCc
Q 001567 132 GLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISS 209 (1052)
Q Consensus 132 ~~~v~~i~~d--~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~ 209 (1052)
-..|.++... .-+.+.|+.||.++.+.|....... .++ ....+
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~-------------------------~~r----------t~g~s 2252 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVV-------------------------CFR----------TAGNS 2252 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEE-------------------------Eee----------ccCcc
Confidence 3446666543 3467788889999998887432111 111 11124
Q ss_pred cEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeecccc--eecCCCCeE-EEEEcCCCCEEEEEe---eCCeEEEE
Q 001567 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAV-CASIAPEQQILAVGT---RRGVVELY 283 (1052)
Q Consensus 210 ~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~--~~~gh~~~v-~va~spd~~~lAsgs---~Dg~V~vw 283 (1052)
.+..+.|+.. |..+..+-.|+.+.+|+..... .++.|..+. ..+|=. .++|+++ .++.+.+|
T Consensus 2253 ~vtr~~f~~q----------Gnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lw 2320 (2439)
T KOG1064|consen 2253 RVTRSRFNHQ----------GNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLW 2320 (2439)
T ss_pred hhhhhhhccc----------CCceeeeccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccch
Confidence 5555555444 4444444445555666654211 125677766 665544 5666654 46899999
Q ss_pred ecCCCC--ceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCC
Q 001567 284 DLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (1052)
Q Consensus 284 d~~~~~--~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~ 361 (1052)
|.-.++ .+++ .. |.++++++++-|.-+.|.+|+++|.|++||+...++.++++.- .
T Consensus 2321 Dtl~~~~~s~v~--~~--------H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~----------~-- 2378 (2439)
T KOG1064|consen 2321 DTLLPPMNSLVH--TC--------HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQAL----------D-- 2378 (2439)
T ss_pred hcccCcccceee--ee--------cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhh----------h--
Confidence 975433 2333 33 9999999999999999999999999999999888777665531 1
Q ss_pred CCCCccceeeee---eeeEEecCCceEEEEec
Q 001567 362 QDCKYEPLMSGT---SMMQWDEYGYRLYAIEE 390 (1052)
Q Consensus 362 ~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~ 390 (1052)
..+.+.+|+ .+++|+..+..++.+..
T Consensus 2379 ---~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2379 ---TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ---hhheeeccCcccceEEEEccccchhhcCc
Confidence 126677776 89999998887776654
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.82 E-value=0.0063 Score=79.30 Aligned_cols=116 Identities=10% Similarity=0.083 Sum_probs=80.0
Q ss_pred EEEeeCCc-EEEEEecCCceeeeeeccccee--c-------------C----------CCCeEEEEEcCCCCEEEEEeeC
Q 001567 224 FVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE--L-------------G----------SGDAVCASIAPEQQILAVGTRR 277 (1052)
Q Consensus 224 ~~~s~dG~-~~~~~~~d~~i~~w~~~~~~~~--~-------------g----------h~~~v~va~spd~~~lAsgs~D 277 (1052)
++++|||+ ++++...++.++.||..++... . | ...+..++++++|.++++-+.+
T Consensus 745 IavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N 824 (1057)
T PLN02919 745 ISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN 824 (1057)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC
Confidence 56788887 6666667788888886543210 0 0 1123488999999999999999
Q ss_pred CeEEEEecCCCCceeEEEEeec-CCC-----CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeE
Q 001567 278 GVVELYDLAESASLIRTVSLYD-WGY-----SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (1052)
Q Consensus 278 g~V~vwd~~~~~~~~~~l~~~~-~~~-----~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l 341 (1052)
+.|++||.++ +. +.++.+.. .++ ..++-.....|+++|||+.+++-+.++.|++||+.++..
T Consensus 825 ~rIrviD~~t-g~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 825 HKIKKLDPAT-KR-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CEEEEEECCC-Ce-EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 9999999875 43 33333210 001 111223567899999999888888899999999988754
No 287
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.81 E-value=0.016 Score=67.79 Aligned_cols=247 Identities=15% Similarity=0.148 Sum_probs=127.9
Q ss_pred CceEEEEeeCCeEEEEEcCC------------cEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCC
Q 001567 21 SQQIIYFKVNNGLLLIASPC------------HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS 88 (1052)
Q Consensus 21 ~~~vv~fSpdg~llA~~sd~------------~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d 88 (1052)
...+++.+|.|..+|+..+. .|+|++.. +.++.+.. ... |.+.++.|+.+ ..|++.+.|
T Consensus 30 ~~~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s--G~ll~~i~-----w~~-~~iv~~~wt~~-e~LvvV~~d 100 (410)
T PF04841_consen 30 SDYIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS--GKLLSSIP-----WDS-GRIVGMGWTDD-EELVVVQSD 100 (410)
T ss_pred cceeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC--CCEeEEEE-----ECC-CCEEEEEECCC-CeEEEEEcC
Confidence 35678889999999988666 59999885 44566543 222 78899999986 455666789
Q ss_pred cEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCcccccee
Q 001567 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFE 168 (1052)
Q Consensus 89 g~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~ 168 (1052)
|.+++||+. +.. .+.-+.... ..+..+..+.+....+..+++-+.++.+....=-.+......
T Consensus 101 G~v~vy~~~-G~~-~fsl~~~i~---------------~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~ 163 (410)
T PF04841_consen 101 GTVRVYDLF-GEF-QFSLGEEIE---------------EEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRR 163 (410)
T ss_pred CEEEEEeCC-Cce-eechhhhcc---------------ccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhc
Confidence 999999985 222 111111000 001111222222223355676677777765421111100000
Q ss_pred ecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeec
Q 001567 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI 248 (1052)
Q Consensus 169 l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~ 248 (1052)
+. .+|..... .........+ ..++.++...+....+..+...+..
T Consensus 164 ~~----------~~p~~~~~-------------~~~~~~~~~i------------~~l~~~~~~~i~~~~g~~i~~i~~~ 208 (410)
T PF04841_consen 164 LP----------EIPGLWTK-------------FHWWPSWTVI------------PLLSSDRVVEILLANGETIYIIDEN 208 (410)
T ss_pred cc----------cCCCcccc-------------cccccccccc------------eEeecCcceEEEEecCCEEEEEEcc
Confidence 00 00000000 0000000011 1122333333333333333322111
Q ss_pred ccceecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 001567 249 KIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1052)
Q Consensus 249 ~~~~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~ 327 (1052)
..+.... .+++ .+++||+|++||.-..+|++.+...+- .+....+.. +-......+.|.-+. .++..+.
T Consensus 209 ~~~~i~~-~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~-------~~~~~p~~~~WCG~d-av~l~~~ 278 (410)
T PF04841_consen 209 SFKQIDS-DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDT-------DSKSPPKQMAWCGND-AVVLSWE 278 (410)
T ss_pred ccccccC-CCCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeec-------CcCCCCcEEEEECCC-cEEEEeC
Confidence 1111112 2455 999999999999999999999988654 444444433 124566889998764 4444553
Q ss_pred CCcEEEEEcCCC
Q 001567 328 SRGLTVWSVSGC 339 (1052)
Q Consensus 328 Dg~v~vWd~~~~ 339 (1052)
..+.+....+.
T Consensus 279 -~~l~lvg~~~~ 289 (410)
T PF04841_consen 279 -DELLLVGPDGD 289 (410)
T ss_pred -CEEEEECCCCC
Confidence 46777765544
No 288
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.79 E-value=0.0016 Score=68.85 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=65.2
Q ss_pred ccceecCCCCeE-EEEEcCC-CCEEEEEeeCCeEEEEecCCCCceeEE-EEeecCCCCCCCCCCeeEEEECC-CCCEEEE
Q 001567 249 KIDKELGSGDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRT-VSLYDWGYSMDDTGPVSCIAWTP-DNSAFAV 324 (1052)
Q Consensus 249 ~~~~~~gh~~~v-~va~spd-~~~lAsgs~Dg~V~vwd~~~~~~~~~~-l~~~~~~~~~~h~g~V~~l~~Sp-Dg~~Las 324 (1052)
+.+.|++|.-.. .+.|+.. -+++-+|+.||.+.-||++.+++.+.. .+. |+.+|.+|.=|| ++.++|+
T Consensus 157 ~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kv--------H~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 157 KVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKV--------HTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeeccee--------eecceEEEecCCCCCceEEE
Confidence 344567887777 7788764 468899999999999999854444332 334 899999999887 7899999
Q ss_pred EEcCCcEEEEEcCC
Q 001567 325 GWKSRGLTVWSVSG 338 (1052)
Q Consensus 325 g~~Dg~v~vWd~~~ 338 (1052)
|+.|-.|++||...
T Consensus 229 GsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 229 GSYDECIRVLDTRN 242 (339)
T ss_pred eccccceeeeehhc
Confidence 99999999999874
No 289
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.75 E-value=0.0064 Score=79.20 Aligned_cols=247 Identities=11% Similarity=0.087 Sum_probs=135.0
Q ss_pred EEEee-CCcEEEEEecCCceeeeeeccccee--c--CC-------------CCeEEEEEcCCCCEEEEE-eeCCeEEEEe
Q 001567 224 FVLYS-NGQLMSCSVSKKGLKLAEFIKIDKE--L--GS-------------GDAVCASIAPEQQILAVG-TRRGVVELYD 284 (1052)
Q Consensus 224 ~~~s~-dG~~~~~~~~d~~i~~w~~~~~~~~--~--gh-------------~~~v~va~spd~~~lAsg-s~Dg~V~vwd 284 (1052)
+++++ +|+++++.+..+.+.+++....... . +. ..+..+++++++..|.++ ..++.|+++|
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id 652 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREID 652 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEe
Confidence 44454 5667777777777777664322110 0 10 123488999988765554 4457899999
Q ss_pred cCCCCceeEEEEeecC-C--CCCC-----C-CCCeeEEEECC-CCCEEEEEEcCCcEEEEEcCCCeEEEEecccc-----
Q 001567 285 LAESASLIRTVSLYDW-G--YSMD-----D-TGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS----- 349 (1052)
Q Consensus 285 ~~~~~~~~~~l~~~~~-~--~~~~-----h-~g~V~~l~~Sp-Dg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~----- 349 (1052)
..+ ..+.++.+... + +..+ . -..-..++|+| +|...++.+.++.|++|+..++... ++.+.+
T Consensus 653 ~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~ 729 (1057)
T PLN02919 653 FVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNL 729 (1057)
T ss_pred cCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccC
Confidence 865 34555543110 0 0000 0 01225799999 5667777778899999999776532 222211
Q ss_pred ---------cCceeeeeEcCCCCCCcc-ceeeee---eeeEEecCCceEEEEecCC------------c-----------
Q 001567 350 ---------LSSISSPIVKPNQDCKYE-PLMSGT---SMMQWDEYGYRLYAIEEGS------------S----------- 393 (1052)
Q Consensus 350 ---------~~~v~s~~~sp~~~~~~~-~l~sg~---~~~~W~~~~~~l~~~~~~~------------~----------- 393 (1052)
....+.++++|++ . ..++.. +++.|+.+++.......+. .
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG----~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDL----KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred CCCccccccccCccEEEEeCCC----CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 1223457888887 4 333332 8888988765432211100 0
Q ss_pred ccEEEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeC
Q 001567 394 ERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (1052)
Q Consensus 394 ~~v~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~ 472 (1052)
..=++++. ++..++-..++.+++|+...+....+.-.|. .... .. + ...+.-.....+++++||+.+++-+.
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~--~G~~--dG--~-~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK--AGFK--DG--K-ALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCC--cCCC--CC--c-ccccccCCceEEEEeCCCCEEEEECC
Confidence 00133344 5555666666677777654332211111110 0000 00 0 01111223567999999998888888
Q ss_pred CceE-EEEccCCc
Q 001567 473 HGLI-LYDIRQKK 484 (1052)
Q Consensus 473 dG~i-lwd~~s~~ 484 (1052)
++.| +||+.+++
T Consensus 879 Nn~Irvid~~~~~ 891 (1057)
T PLN02919 879 NSLIRYLDLNKGE 891 (1057)
T ss_pred CCEEEEEECCCCc
Confidence 9999 99998865
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.74 E-value=0.00036 Score=76.58 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=65.5
Q ss_pred CCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecC
Q 001567 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (1052)
Q Consensus 305 ~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~ 381 (1052)
+|-.-++.|+||||++.+.++.+|..|+|=.....-.+.++--.|..-|+.++.-++ ..++||+ ++++|+..
T Consensus 149 GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-----~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 149 GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-----YLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-----ceeeecCCCCcEEEEecc
Confidence 499999999999999999999999999999887766666665434888998888776 4567666 89999998
Q ss_pred CceEEEEe
Q 001567 382 GYRLYAIE 389 (1052)
Q Consensus 382 ~~~l~~~~ 389 (1052)
+|+++.+.
T Consensus 224 sgk~L~t~ 231 (390)
T KOG3914|consen 224 SGKLLDTC 231 (390)
T ss_pred cCCccccc
Confidence 88876543
No 291
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.73 E-value=0.0056 Score=71.77 Aligned_cols=90 Identities=10% Similarity=0.055 Sum_probs=57.8
Q ss_pred EEEEcCCCCE-EEEEeeC---CeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEE-EcC--CcEEE
Q 001567 261 CASIAPEQQI-LAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKS--RGLTV 333 (1052)
Q Consensus 261 ~va~spd~~~-lAsgs~D---g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg-~~D--g~v~v 333 (1052)
.-.|||||+. ++..+.+ ..|.++|+.+ ++. +.+.. ..+.+...+|||||+.++.. +.+ ..|.+
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~~-~~lt~--------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 261 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GKK-EKIAS--------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYL 261 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCC-CcE-EEEec--------CCCcEEeeEECCCCCEEEEEEccCCCcEEEE
Confidence 8899999984 6654443 4688888865 443 33333 45667788999999877654 334 35666
Q ss_pred EEcCCCeEEEEecccccCceeeeeEcCCC
Q 001567 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1052)
Q Consensus 334 Wd~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (1052)
+++.++... .+..+ ......+.|+|++
T Consensus 262 ~dl~~g~~~-~LT~~-~~~d~~p~~SPDG 288 (419)
T PRK04043 262 YDTNTKTLT-QITNY-PGIDVNGNFVEDD 288 (419)
T ss_pred EECCCCcEE-EcccC-CCccCccEECCCC
Confidence 787777533 33322 2223456899998
No 292
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.73 E-value=0.013 Score=64.82 Aligned_cols=258 Identities=16% Similarity=0.150 Sum_probs=133.6
Q ss_pred EEEeeCCeEEEEEc-----------CCcEEEeecCCceeEEEEEecChh-hhhhcCccceEEEcCCccEEEEEe--CCcE
Q 001567 25 IYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRDSE-SVQREGENLQAVWSPDTKLIAVVT--SSLY 90 (1052)
Q Consensus 25 v~fSpdg~llA~~s-----------d~~v~IW~~~~~~~~l~~~~r~~~-sl~~~G~~~~v~wSPDg~~Lav~t--~dg~ 90 (1052)
+..||||+.+.+++ .+-|.+||.. +..+.+...-+.+ ....--.-...++|+||+++.+.. -.-.
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecC-cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 55899999777652 1359999995 7777776654443 111111123467888887776643 2234
Q ss_pred EEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeec
Q 001567 91 LHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELV 170 (1052)
Q Consensus 91 l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~ 170 (1052)
|-|.|++..+ +...+...+ +....-..+..+..-|.||.+..+..+..-.....
T Consensus 120 VtVVDl~~~k---------------------vv~ei~~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~-- 173 (342)
T PF06433_consen 120 VTVVDLAAKK---------------------VVGEIDTPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK-- 173 (342)
T ss_dssp EEEEETTTTE---------------------EEEEEEGTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE--
T ss_pred EEEEECCCCc---------------------eeeeecCCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEe--
Confidence 5555554221 011111122 12122223466788889999888887743322110
Q ss_pred ccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCcee---eeee
Q 001567 171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK---LAEF 247 (1052)
Q Consensus 171 ~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~---~w~~ 247 (1052)
..-.|..+.+. -+..-.|....+.+...+=+|+++........++ -|..
T Consensus 174 ---------~t~~F~~~~dp-------------------~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 174 ---------STKVFDPDDDP-------------------LFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp ---------EEEESSTTTS--------------------B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred ---------eccccCCCCcc-------------------cccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 11122222211 1111123333344555666777766555544433 3433
Q ss_pred ccc----cee-cCCCCeEEEEEcCCCCEEEEEee--------CC--eEEEEecCCCCceeEEEEeecCCCCCCCCCCeeE
Q 001567 248 IKI----DKE-LGSGDAVCASIAPEQQILAVGTR--------RG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC 312 (1052)
Q Consensus 248 ~~~----~~~-~gh~~~v~va~spd~~~lAsgs~--------Dg--~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~ 312 (1052)
.+. ..| +| +.--+++++....|.+--. |+ .|-+||+.+ .+.+.++.. ..++.+
T Consensus 226 ~t~~e~~~~WrPG--G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l---------~~~~~S 293 (342)
T PF06433_consen 226 LTDAEKADGWRPG--GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL---------EHPIDS 293 (342)
T ss_dssp S-HHHHHTTEEE---SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE---------EEEESE
T ss_pred cCccccccCcCCc--ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC---------CCccce
Confidence 221 112 11 1114777776554444321 22 366777776 777777775 346889
Q ss_pred EEECCCCC-EEEEE-EcCCcEEEEEcCCCeEEEEecccc
Q 001567 313 IAWTPDNS-AFAVG-WKSRGLTVWSVSGCRLMSTIRQIS 349 (1052)
Q Consensus 313 l~~SpDg~-~Lasg-~~Dg~v~vWd~~~~~l~~tl~~~~ 349 (1052)
|+.|.|.+ +|.+. ..++.+.|||..+++++.++.+-+
T Consensus 294 i~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 294 IAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp EEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred EEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 99999877 56444 457899999999999999988753
No 293
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.67 E-value=7.9e-05 Score=55.41 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=32.5
Q ss_pred CcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEE
Q 001567 445 PVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (1052)
Q Consensus 445 p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd 479 (1052)
..++.+|..+|++++|+|++++||+||.||.+ +||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 35678999999999999999999999999999 997
No 294
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.67 E-value=0.013 Score=66.29 Aligned_cols=306 Identities=13% Similarity=0.123 Sum_probs=156.5
Q ss_pred EEEeeCCcEEEEEecCCceeeeeeccccee--cCCCCeEEEEEcCCCCEEEEEeeCC---------------eEEEEecC
Q 001567 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRG---------------VVELYDLA 286 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~gh~~~v~va~spd~~~lAsgs~Dg---------------~V~vwd~~ 286 (1052)
+..||.|++++.. ....+.+|.+....++ .-|.+.-.+.|||.+++|.+=+..+ .+.+||+.
T Consensus 38 ~~~SP~G~~l~~~-~~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~ 116 (561)
T COG5354 38 VSESPLGTYLFSE-HAAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA 116 (561)
T ss_pred eeecCcchheehh-hccceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc
Confidence 4568888887753 3345778877654433 3344433899999999999866444 38999998
Q ss_pred CCCceeEEEEeecCCCCCCCCCCee-EEEECCCCCEEEEEEcCCcEEEEEcCCCe---EEEEecccccCceeeeeEcCCC
Q 001567 287 ESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQ 362 (1052)
Q Consensus 287 ~~~~~~~~l~~~~~~~~~~h~g~V~-~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~---l~~tl~~~~~~~v~s~~~sp~~ 362 (1052)
. +..+..+..... +...+ -+.||-|..++|=-.. ..+.|.++.+.. ....++ ...+..-.++|.+
T Consensus 117 s-g~iv~sf~~~~q------~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~t~n~~~~p~~~lr---~~gi~dFsisP~~ 185 (561)
T COG5354 117 S-GMIVFSFNGISQ------PYLGWPVLKFSIDDKYVARVVG-SSLYIHEITDNIEEHPFKNLR---PVGILDFSISPEG 185 (561)
T ss_pred C-ceeEeeccccCC------cccccceeeeeecchhhhhhcc-CeEEEEecCCccccCchhhcc---ccceeeEEecCCC
Confidence 7 777777665321 11133 6889998887765543 578999973321 122222 2346666777775
Q ss_pred CCCccceeeeeeeeEEecCCceEEEEecCCcccEEEEeccceeeeec---cCCceeeeEee------------------e
Q 001567 363 DCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRG---VSGMTYARQVI------------------Y 421 (1052)
Q Consensus 363 ~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s---~d~~v~~w~~~------------------~ 421 (1052)
. .. .+..|.++...- ...-+|+.++..+.+++-+ .|+.---|..+ .
T Consensus 186 n--~~------~la~~tPEk~~k-----pa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyf 252 (561)
T COG5354 186 N--HD------ELAYWTPEKLNK-----PAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYF 252 (561)
T ss_pred C--Cc------eEEEEccccCCC-----CcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeeccccee
Confidence 2 11 123444432110 0000112222111111111 01111112211 1
Q ss_pred cCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEe--CCceE-EEEccCCcEEEecCccceeeeE
Q 001567 422 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG--LHGLI-LYDIRQKKWRVFGDITQEQKIQ 498 (1052)
Q Consensus 422 ~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag--~dG~i-lwd~~s~~w~~f~~~~~e~~~~ 498 (1052)
|+..+++.+- +.-.+|... .-.+||...+|+|+++.+++.+ ..-.+ ++|+.++- .|.-..+.+ .
T Consensus 253 gesnLyl~~~--------~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl--~~~~Pe~~r--N 319 (561)
T COG5354 253 GESNLYLLRI--------TERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL--RFYFPEQKR--N 319 (561)
T ss_pred ccceEEEEee--------cccccceec-cccccceeeeecccCCceeEEecccccceeecccccce--EEecCCccc--c
Confidence 2222222221 111133332 4578999999999999888766 34555 88887762 222222211 1
Q ss_pred EEEEEEeCCEEEEEEEecCCCeEEEEEeeCCCCCCcceeEEeecCCcc-EEEEeeCCEEEEEE------cCCeEEEEEEE
Q 001567 499 SKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKP-IVMDVYEDYILVTY------RPFDVHIFHVK 571 (1052)
Q Consensus 499 v~gl~W~~~~li~~~~~~~~~~~elrly~~~~ld~~~~l~~~~~~~~~-~~~s~~~~~llv~~------~d~~i~l~~~~ 571 (1052)
..-+.-..+++++++... ....+.+|+.. +...+......+... +-.++++.++.+.+ .|..+.||++.
T Consensus 320 T~~fsp~~r~il~agF~n--l~gni~i~~~~--~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 320 TIFFSPHERYILFAGFDN--LQGNIEIFDPA--GRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred cccccCcccEEEEecCCc--cccceEEeccC--CceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 112233466777765542 33456667663 111111122222222 22456677666633 25677788773
No 295
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.002 Score=75.67 Aligned_cols=128 Identities=19% Similarity=0.289 Sum_probs=93.3
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCC------CC------EEEEEEcC
Q 001567 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD------NS------AFAVGWKS 328 (1052)
Q Consensus 261 ~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpD------g~------~Lasg~~D 328 (1052)
.+.|+|.| +||.||.+ .|.|-|..+ .+.++.+.. |...|+.+.|.|- +. .||++...
T Consensus 20 A~Dw~~~G-LiAygshs-lV~VVDs~s-~q~iqsie~--------h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~ 88 (1062)
T KOG1912|consen 20 AADWSPSG-LIAYGSHS-LVSVVDSRS-LQLIQSIEL--------HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS 88 (1062)
T ss_pred ccccCccc-eEEEecCc-eEEEEehhh-hhhhhcccc--------CccceeEEEeccCCCchhccCccccceeEEecccc
Confidence 67888877 88998865 577878776 677777777 9999999999872 22 67888888
Q ss_pred CcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccce--eeee-eeeEEecCCceEEEEecCCcccEEEEe
Q 001567 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL--MSGT-SMMQWDEYGYRLYAIEEGSSERVLIFS 400 (1052)
Q Consensus 329 g~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l--~sg~-~~~~W~~~~~~l~~~~~~~~~~v~~~s 400 (1052)
|.|.+||...+...+.+..+ .+++..+.|-|..+-....+ ++|+ ++.+|+..+|+.+-...-....+.+|.
T Consensus 89 GrIil~d~~~~s~~~~l~~~-~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~ 162 (1062)
T KOG1912|consen 89 GRIILVDFVLASVINWLSHS-NDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFR 162 (1062)
T ss_pred CcEEEEEehhhhhhhhhcCC-CcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeee
Confidence 99999999988888888776 77888888887765433322 3444 899998887765544333233343343
No 296
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.00035 Score=78.41 Aligned_cols=173 Identities=13% Similarity=0.134 Sum_probs=113.5
Q ss_pred ccccceEEEEee-cC-CeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccC
Q 001567 129 AEKGLSVSNIVS-DN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP 206 (1052)
Q Consensus 129 ~~~~~~v~~i~~-d~-~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~ 206 (1052)
.++...|+++.. ++ +.++.+++|.+|..|+...+..+..+ ..+......
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t-----------------------------saCQfTY~a 782 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT-----------------------------SACQFTYQA 782 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc-----------------------------ceeeeEhhh
Confidence 344455555532 33 45788899999999877665433221 011122345
Q ss_pred CCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee------c--CCCCeE-EEEEcCCCCE-EEEEee
Q 001567 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------L--GSGDAV-CASIAPEQQI-LAVGTR 276 (1052)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~------~--gh~~~v-~va~spd~~~-lAsgs~ 276 (1052)
|+..|.++.| ..|-+.++ +.|+.+.+||...+..+ . +..+.| |+. |-+..+ +|.++.
T Consensus 783 Hkk~i~~igf----------L~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsa 849 (1034)
T KOG4190|consen 783 HKKPIHDIGF----------LADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSA 849 (1034)
T ss_pred ccCcccceee----------eeccceee--eccCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccc
Confidence 6667777654 56666666 56888999997655433 1 222334 443 334444 455578
Q ss_pred CCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecc
Q 001567 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1052)
Q Consensus 277 Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~ 347 (1052)
..||+++|.+. ++....++... .++..+-+.+++..|.|+.+|+|-.+|.+.+-|..+|+.+.+.+.
T Consensus 850 eSTVKl~DaRs-ce~~~E~kVcn---a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 850 ESTVKLFDARS-CEWTCELKVCN---APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred hhhheeeeccc-ccceeeEEecc---CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 89999999887 66666555421 123456799999999999999999999999999999987765543
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.61 E-value=0.00072 Score=70.09 Aligned_cols=152 Identities=16% Similarity=0.103 Sum_probs=91.8
Q ss_pred CCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCC-eEEEEecccccCceeeeeEcCCCCCCccceeeee--------eee
Q 001567 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--------SMM 376 (1052)
Q Consensus 306 h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~-~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--------~~~ 376 (1052)
|+++-.+=+-|--++.+++++.||.+.+.+...- +++..+...+.+..+....+ .+ +.+.++. ..+
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~-~~----~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICR-HG----NSILSGGCGNWNAQDNFY 162 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceee-cc----cEEecCCcceEeecccee
Confidence 5555555555566788999999999999998651 11222221111111111111 11 3333322 333
Q ss_pred EEecCCceEEEEecCCcccE--EEEec--cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccC-cccccC
Q 001567 377 QWDEYGYRLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQ 451 (1052)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v--~~~s~--~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p-~~~~~h 451 (1052)
.|+.+-...+.........| ++-.+ ...++.|+.||.+.+||...... | ..|..|
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--------------------p~S~l~ah 222 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--------------------PVSLLKAH 222 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc--------------------hHHHHHHh
Confidence 44443322222221112224 33334 45677888999999999876543 5 456799
Q ss_pred CCcEEEEEEcc-CCCEEEEEeCCceE-EEEccC
Q 001567 452 NWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQ 482 (1052)
Q Consensus 452 ~~~V~~va~Sp-dG~~lavag~dG~i-lwd~~s 482 (1052)
..+|+.+-|+| ++..|.++++||.+ +||..+
T Consensus 223 k~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 223 KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999999998 68999999999999 999876
No 298
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.58 E-value=0.00056 Score=79.65 Aligned_cols=95 Identities=20% Similarity=0.396 Sum_probs=70.5
Q ss_pred cCCCCeE-EEEEcCCC-CEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCc
Q 001567 254 LGSGDAV-CASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRG 330 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~-~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp-Dg~~Lasg~~Dg~ 330 (1052)
-||+.++ .+-|+|+. ..+|+++.|..|..||+...-..+..... | |+ ....|+|+. |+..+|+. ..+-
T Consensus 111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~--w-----~s-~asqVkwnyk~p~vlass-hg~~ 181 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS--W-----RS-AASQVKWNYKDPNVLASS-HGND 181 (1081)
T ss_pred ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec--c-----cc-cCceeeecccCcchhhhc-cCCc
Confidence 5888888 99999975 47899999999999999875555554433 2 33 447899997 66666664 4478
Q ss_pred EEEEEcC-CCeEEEEecccccCceeeeeE
Q 001567 331 LTVWSVS-GCRLMSTIRQISLSSISSPIV 358 (1052)
Q Consensus 331 v~vWd~~-~~~l~~tl~~~~~~~v~s~~~ 358 (1052)
+.+||.. |+..++++++| ...|+++.|
T Consensus 182 i~vwd~r~gs~pl~s~K~~-vs~vn~~~f 209 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGH-VSSVNSIDF 209 (1081)
T ss_pred eEEEeccCCCcceEEeccc-ceeeehHHH
Confidence 9999985 56778888886 555555554
No 299
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.54 E-value=0.00043 Score=80.00 Aligned_cols=74 Identities=24% Similarity=0.417 Sum_probs=59.4
Q ss_pred CCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEE
Q 001567 256 SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (1052)
Q Consensus 256 h~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vW 334 (1052)
....+ |+++||+...++.||.||+|.+||... +. ....+ +.=..+.++|+|||..+++|++.|.+.+|
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~~-t~~~k---------a~~~P~~iaWHp~gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTR-GV-TLLAK---------AEFIPTLIAWHPDGAIFVVGSEQGELQCF 326 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCC-Ce-eeeee---------ecccceEEEEcCCCcEEEEEcCCceEEEE
Confidence 34455 999999999999999999999999865 21 22112 23446899999999999999999999999
Q ss_pred EcCCCe
Q 001567 335 SVSGCR 340 (1052)
Q Consensus 335 d~~~~~ 340 (1052)
|+.-+.
T Consensus 327 D~ALsp 332 (545)
T PF11768_consen 327 DMALSP 332 (545)
T ss_pred EeecCc
Confidence 986543
No 300
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.49 E-value=0.025 Score=65.70 Aligned_cols=145 Identities=12% Similarity=0.022 Sum_probs=73.7
Q ss_pred CEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC--CCCEEEEEEcCCcEEEEEcCCCeEEEEec
Q 001567 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1052)
Q Consensus 269 ~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp--Dg~~Lasg~~Dg~v~vWd~~~~~l~~tl~ 346 (1052)
..+.+|..+|.+..+|..+ ++.+-...... +........+..+.-+| ++..+.+++.+|.+..||..+++......
T Consensus 191 ~~v~~~~~~g~v~ald~~t-G~~~W~~~~~~-~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~ 268 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQT-GQPLWEQRVAL-PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD 268 (377)
T ss_pred CEEEEECCCCEEEEEEccC-CCEeeeecccc-CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec
Confidence 4677888899999999877 65433222100 00000000011111112 35577777888999999998887665544
Q ss_pred ccccCceeeeeEcCCCCCCccceeee--eeeeEEecCCceEEEEecCCcccEEE-Ee-ccceeeeeccCCceeeeEeeec
Q 001567 347 QISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEGSSERVLI-FS-FGKCCLNRGVSGMTYARQVIYG 422 (1052)
Q Consensus 347 ~~~~~~v~s~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~~~~~~v~~-~s-~~k~~~s~s~d~~v~~w~~~~~ 422 (1052)
.. ....+.... + ..++.. ..+..++..+++.+-....-...... .. .+..+..++.++.+..++...+
T Consensus 269 ~~---~~~~p~~~~-~----~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 269 AS---SYQGPAVDD-N----RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred cC---CccCceEeC-C----EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCC
Confidence 21 111222211 1 222222 26777888776554332111111111 01 1566777788888877775444
Q ss_pred C
Q 001567 423 E 423 (1052)
Q Consensus 423 ~ 423 (1052)
+
T Consensus 341 ~ 341 (377)
T TIGR03300 341 S 341 (377)
T ss_pred C
Confidence 3
No 301
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.00018 Score=80.62 Aligned_cols=160 Identities=18% Similarity=0.176 Sum_probs=111.6
Q ss_pred CCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCC-------CeEEEEecccccCceeeeeEcCCCCCCccceeeee-eee
Q 001567 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMM 376 (1052)
Q Consensus 305 ~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~-------~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~~~ 376 (1052)
+|+..|..++--.+.+-+++++.|++|++|++.. ..+..|...| ..+|.++.|-.+. ..++|.. .+.
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aH-kk~i~~igfL~~l----r~i~ScD~giH 807 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAH-KKPIHDIGFLADL----RSIASCDGGIH 807 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhc-cCcccceeeeecc----ceeeeccCcce
Confidence 5998998887666778899999999999999842 2355566667 7888888887765 6777665 788
Q ss_pred EEecCCceEEEEe-----cCCcccEEEEec-cc-eeeee-ccCCceeeeEeeecCceEEEEecCCcchheeeeeccCccc
Q 001567 377 QWDEYGYRLYAIE-----EGSSERVLIFSF-GK-CCLNR-GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 448 (1052)
Q Consensus 377 ~W~~~~~~l~~~~-----~~~~~~v~~~s~-~k-~~~s~-s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~ 448 (1052)
+||+--++++... .+....|.++.- .+ .+.++ +...++++.|...++-. ..|+.-+.
T Consensus 808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~-----------~E~kVcna---- 872 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT-----------CELKVCNA---- 872 (1034)
T ss_pred eecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccce-----------eeEEeccC----
Confidence 9999877776532 122233455554 22 33344 56678888776544320 11222211
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCc
Q 001567 449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (1052)
Q Consensus 449 ~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~ 484 (1052)
.+.|.-++++++-+.|.++|+|-.+|.+ +-|.++|+
T Consensus 873 ~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 873 PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 2345669999999999999999999999 99999886
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.42 E-value=0.0019 Score=67.10 Aligned_cols=76 Identities=21% Similarity=0.307 Sum_probs=62.0
Q ss_pred CCeE-EEEEcCC-CCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCcEEE
Q 001567 257 GDAV-CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTV 333 (1052)
Q Consensus 257 ~~~v-~va~spd-~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp-Dg~~Lasg~~Dg~v~v 333 (1052)
.++| +++-+|. ..++++|+.||.+-+||++...-....++. |+.+++.+-|+| ++..|.++++||.+.-
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a--------hk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA--------HKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH--------hhhhhhheeccCCCchheeEecCCCcEEE
Confidence 3457 8888884 567889999999999999873233334555 999999999999 7889999999999999
Q ss_pred EEcCCCe
Q 001567 334 WSVSGCR 340 (1052)
Q Consensus 334 Wd~~~~~ 340 (1052)
||..+.-
T Consensus 251 wdas~~~ 257 (319)
T KOG4714|consen 251 WDASTTF 257 (319)
T ss_pred EcCCCce
Confidence 9998743
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.41 E-value=0.041 Score=68.63 Aligned_cols=241 Identities=13% Similarity=0.125 Sum_probs=123.3
Q ss_pred CccceEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEE
Q 001567 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLL 147 (1052)
Q Consensus 68 G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv 147 (1052)
+.++++.|--|...|++++.+|.+.+-|.++.... .-+. ........+.++|.+.+++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-------------------ivg~---vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-------------------IVGN---VDNGISAASWSPDEELLAL 126 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-------------------eeee---ccCceEEEeecCCCcEEEE
Confidence 67889999999999999999999999876643210 0000 0111234456677777888
Q ss_pred EecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEe
Q 001567 148 GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY 227 (1052)
Q Consensus 148 ~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s 227 (1052)
.|..+.+.....+-+......++.-.........+.+.- ...+..+..+.+.......+...+..++.+. ....+.+-
T Consensus 127 iT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqfrgs~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWR 204 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQFRGSEGRQAARQKIEKEKALEQIEQDD-HKTSISWR 204 (1265)
T ss_pred EeCCcEEEEEeccccchhccccccccccccccceecccc-cceeeecchhhhcccccccccccccchhhcc-CCceEEEc
Confidence 888887776644322222221110000000000000000 0000000000000000000000011111110 11223446
Q ss_pred eCCcEEEEEe-----cCCceeeeeeccccee-c-CCCCeE--EEEEcCCCCEEEEEe---eCCeEEEEecCCCCceeEEE
Q 001567 228 SNGQLMSCSV-----SKKGLKLAEFIKIDKE-L-GSGDAV--CASIAPEQQILAVGT---RRGVVELYDLAESASLIRTV 295 (1052)
Q Consensus 228 ~dG~~~~~~~-----~d~~i~~w~~~~~~~~-~-gh~~~v--~va~spd~~~lAsgs---~Dg~V~vwd~~~~~~~~~~l 295 (1052)
-||+++++.. +...+++|+-. +... . ...... +++|-|.|.++|+-. .|+.|.+|.-+ |-.-..+
T Consensus 205 gDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN--GL~hg~f 281 (1265)
T KOG1920|consen 205 GDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN--GLRHGEF 281 (1265)
T ss_pred cCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC--Ccccccc
Confidence 7888877733 33678999876 2111 0 011222 899999999999854 35678888753 2111111
Q ss_pred EeecCCCCCCCCCCeeEEEECCCCCEEEE---EEcCCcEEEEEcCCC
Q 001567 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAV---GWKSRGLTVWSVSGC 339 (1052)
Q Consensus 296 ~~~~~~~~~~h~g~V~~l~~SpDg~~Las---g~~Dg~v~vWd~~~~ 339 (1052)
.. .++ ....+|..++|+.++..||+ ......|++|-+.+-
T Consensus 282 ~l-~~p---~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 282 VL-PFP---LDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cc-CCc---ccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 11 011 13455999999999999999 555556999988664
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.0045 Score=73.58 Aligned_cols=187 Identities=17% Similarity=0.206 Sum_probs=113.4
Q ss_pred CCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 001567 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1052)
Q Consensus 257 ~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd 335 (1052)
.+++ |++++ ++.+|.|+-+|.|++++.+. .. .+... |... .-+|.++|||+.||+|.|-+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~--~~-~~~~~--------~s~~------~~~Gey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG--NP-KTNFD--------HSSS------ILEGEYVASCSDDGKVVIGS 99 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC--cc-ccccc--------cccc------ccCCceEEEecCCCcEEEee
Confidence 3556 77776 56799999999999999764 22 22222 4333 55799999999999999999
Q ss_pred cCCCeEEEEecccccCceeeeeEcCCCC-CCccceeeeeeeeEEecCCceEEEEecCCcccEEEEeccceeeeeccCCce
Q 001567 336 VSGCRLMSTIRQISLSSISSPIVKPNQD-CKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMT 414 (1052)
Q Consensus 336 ~~~~~l~~tl~~~~~~~v~s~~~sp~~~-~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v 414 (1052)
+.+.+..+++.-+ ..+.+++++|+-. ..-..+++ |+.-| +
T Consensus 100 l~~~~~~~~~df~--rpiksial~Pd~~~~~sk~fv~------------------------------------GG~ag-l 140 (846)
T KOG2066|consen 100 LFTDDEITQYDFK--RPIKSIALHPDFSRQQSKQFVS------------------------------------GGMAG-L 140 (846)
T ss_pred ccCCccceeEecC--CcceeEEeccchhhhhhhheee------------------------------------cCcce-E
Confidence 9998887777654 6788999999821 01122222 22221 1
Q ss_pred eeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceEEEEccCCcEEEecCccce
Q 001567 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQE 494 (1052)
Q Consensus 415 ~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~ilwd~~s~~w~~f~~~~~e 494 (1052)
.+ ... .|-.-..+.....-.++|.++.| .|.++|-++.+|+-+||+.+++- .++...+
T Consensus 141 vL----~er--------------~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~--l~~i~~p 198 (846)
T KOG2066|consen 141 VL----SER--------------NWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQR--LTNIPPP 198 (846)
T ss_pred EE----ehh--------------hhhcCccceeeecCccceEEEEe--cCcEEEEecCCCcEEEeccccce--eeccCCC
Confidence 00 000 00000001122234578999998 69999999999988999988753 2222211
Q ss_pred e-e----eEEEEEEEeCCEEEEEEEecCCCeEEEEEeeC
Q 001567 495 Q-K----IQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (1052)
Q Consensus 495 ~-~----~~v~gl~W~~~~li~~~~~~~~~~~elrly~~ 528 (1052)
. . ..--.+.|..+..++-++. ..|++.+.
T Consensus 199 ~~~~R~e~fpphl~W~~~~~LVIGW~-----d~v~i~~I 232 (846)
T KOG2066|consen 199 SQSVRPELFPPHLHWQDEDRLVIGWG-----DSVKICSI 232 (846)
T ss_pred CCCCCcccCCCceEecCCCeEEEecC-----CeEEEEEE
Confidence 1 1 1122688875544443343 44555544
No 305
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00077 Score=77.95 Aligned_cols=72 Identities=21% Similarity=0.384 Sum_probs=60.7
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCee-EEEECCCCCEEEEEEcCCcEEEEEcCCC
Q 001567 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1052)
Q Consensus 261 ~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~-~l~~SpDg~~Lasg~~Dg~v~vWd~~~~ 339 (1052)
-+.|||.-.+||.+..+|.|.++.+. .+.+-++.. |...|+ +++|.|||+.||+|-.||+|++-|++.+
T Consensus 25 ~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~--------p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 25 RIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPI--------PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred EEEEcCccchhheeccCCcEEEEEec--cceeEeccC--------CCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 78999999999999999999999886 344445543 555566 9999999999999999999999999887
Q ss_pred eEE
Q 001567 340 RLM 342 (1052)
Q Consensus 340 ~l~ 342 (1052)
..+
T Consensus 95 ~~l 97 (665)
T KOG4640|consen 95 GRL 97 (665)
T ss_pred Cce
Confidence 544
No 306
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.016 Score=63.84 Aligned_cols=77 Identities=13% Similarity=0.272 Sum_probs=62.8
Q ss_pred ecCCCCeE-EEEEcCCCC-EEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCC-EEEEEEcCC
Q 001567 253 ELGSGDAV-CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSR 329 (1052)
Q Consensus 253 ~~gh~~~v-~va~spd~~-~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~-~Lasg~~Dg 329 (1052)
..+|...+ .++|||..+ ++..++.+.+|+|.|+.+ ...+..... | ..+++++|.-|.. ++-.|-..|
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a--------~-~~~wSC~wDlde~h~IYaGl~nG 258 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIA--------Y-NQIWSCCWDLDERHVIYAGLQNG 258 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheec--------c-CCceeeeeccCCcceeEEeccCc
Confidence 46788889 999999876 899999999999999987 444444444 4 7899999998764 777888889
Q ss_pred cEEEEEcCCC
Q 001567 330 GLTVWSVSGC 339 (1052)
Q Consensus 330 ~v~vWd~~~~ 339 (1052)
.|.|+|+...
T Consensus 259 ~VlvyD~R~~ 268 (463)
T KOG1645|consen 259 MVLVYDMRQP 268 (463)
T ss_pred eEEEEEccCC
Confidence 9999999643
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.033 Score=67.04 Aligned_cols=137 Identities=18% Similarity=0.266 Sum_probs=87.9
Q ss_pred CeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCE-EEEEEcCCcEEEEE
Q 001567 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA-FAVGWKSRGLTVWS 335 (1052)
Q Consensus 258 ~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~-Lasg~~Dg~v~vWd 335 (1052)
.++ +++++.+-+.+|+|-.||.|..+.-+- .+... ....+...-.++|+.+++..||+. +.++.. ..|.+++
T Consensus 126 ~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi-~RDrg----sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt-~~V~~y~ 199 (933)
T KOG2114|consen 126 SPASSLAVSEDLKTIVCGFTNGLVICYKGDI-LRDRG----SRQDYSHRGKEPITGLALRSDGKSVLFVATT-EQVMLYS 199 (933)
T ss_pred CcceEEEEEccccEEEEEecCcEEEEEcCcc-hhccc----cceeeeccCCCCceeeEEecCCceeEEEEec-ceeEEEE
Confidence 455 899999999999999999999997432 11100 000111124679999999999987 344433 5799999
Q ss_pred cCCCe-EEEEecccccCceeeeeEcCCCCCCccceeeee-eeeEEecCCceEEEEec-CCcccEEEEeccce
Q 001567 336 VSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE-GSSERVLIFSFGKC 404 (1052)
Q Consensus 336 ~~~~~-l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~-~~~~~v~~~s~~k~ 404 (1052)
+.+.. ..+.+..+ -.++++..+++.. .+.+++++ -+-+++..+...-.+.. ||.-.+..+++|-.
T Consensus 200 l~gr~p~~~~ld~~-G~~lnCss~~~~t---~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~ 267 (933)
T KOG2114|consen 200 LSGRTPSLKVLDNN-GISLNCSSFSDGT---YQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLL 267 (933)
T ss_pred ecCCCcceeeeccC-CccceeeecCCCC---ccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEecCEE
Confidence 98765 34556655 3457777776654 24555555 66677776654444443 66666666665443
No 308
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.24 E-value=0.02 Score=67.41 Aligned_cols=112 Identities=12% Similarity=0.145 Sum_probs=79.0
Q ss_pred EEEeeCCcEEEEEecCCceeeeeeccccee----cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEee
Q 001567 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~----~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~ 298 (1052)
-++...+++++.|+..|.+-+++-..++.. .+-...+ ...+|++..++|.|++.|.|.++-+.. ...-......
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~~t 117 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDYVT 117 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcceeec
Confidence 445667777777777777666654443322 2233444 778999999999999999999999876 3221111110
Q ss_pred cCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCC
Q 001567 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (1052)
Q Consensus 299 ~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~ 338 (1052)
+....|...|+|++||+||..+.+|...|.|..-.+..
T Consensus 118 --~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 118 --PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred --cccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11112788999999999999999999999998887766
No 309
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.22 E-value=0.16 Score=59.45 Aligned_cols=70 Identities=24% Similarity=0.322 Sum_probs=45.7
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCc-EEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeC
Q 001567 451 QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK-WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (1052)
Q Consensus 451 h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~-w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~elrly~~ 528 (1052)
..+++..+++||+|+++|.-..+|.+ +.+..-.+ ...+... .......|.|.|+--|+..+. .++.++..
T Consensus 215 ~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~---~~~~p~~~~WCG~dav~l~~~-----~~l~lvg~ 286 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD---SKSPPKQMAWCGNDAVVLSWE-----DELLLVGP 286 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC---cCCCCcEEEEECCCcEEEEeC-----CEEEEECC
Confidence 35689999999999999999999998 77654332 1112111 112245799998765555342 45666654
No 310
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.22 E-value=0.13 Score=60.48 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=70.2
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHcCCCCCchHHHHHHHHHhhccccccccccccccCCccccchhhhHHHHHHHHHccch
Q 001567 761 LHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPE 840 (1052)
Q Consensus 761 L~~il~~ll~~~~~~~a~~~a~~~~~l~~f~~~LE~lLh~vle~e~~~~~~~~~~~~i~~~~~~~~ll~~v~~fi~~~~~ 840 (1052)
-..++++|-++|..+.|++++ ..|+ .-....+++ .
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~-----------------------------------~D~~-----~rFeLAl~l-----g 332 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV-----------------------------------TDPD-----HRFELALQL-----G 332 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS-----------------------------------S-HH-----HHHHHHHHC-----T
T ss_pred HHHHHHHHHHCCCHHHHHhhc-----------------------------------CChH-----HHhHHHHhc-----C
Confidence 466888888899999999775 0121 223333322 3
Q ss_pred hHHHHhhhccccc-ccchHHhHhccCChHHHHHHHHhcCcHhHHhhhhhhhhhccCcc------hhHHHHHHHHHHHHhc
Q 001567 841 YLNVVVSVARKTD-GRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPA------VSQYSALRLLQATLDE 913 (1052)
Q Consensus 841 ~l~ivv~caRKtE-~~~W~~lF~~~g~P~~Lf~~cl~~~~l~~aa~yLiv~~~~e~~~------~~~~~~~~Ll~~al~~ 913 (1052)
=|++...+|++++ ...|+.| -+.+|+.|+++.|-.++-=..++++.. -.++...+|.+.|.++
T Consensus 333 ~L~~A~~~a~~~~~~~~W~~L----------g~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 333 NLDIALEIAKELDDPEKWKQL----------GDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp -HHHHHHHCCCCSTHHHHHHH----------HHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCcHHHHHHH----------HHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 3788888999987 5678765 566888888888877764444433322 2467788888889999
Q ss_pred ccHhHHHHHH
Q 001567 914 CLYELAGELV 923 (1052)
Q Consensus 914 ~~w~l~~eL~ 923 (1052)
+++..|+.-.
T Consensus 403 ~~~n~af~~~ 412 (443)
T PF04053_consen 403 GDINIAFQAA 412 (443)
T ss_dssp T-HHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9988776543
No 311
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.21 E-value=0.0012 Score=70.91 Aligned_cols=121 Identities=10% Similarity=0.098 Sum_probs=87.4
Q ss_pred CCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCC----CceeEEEEeecCCCCCCCCCCeeEEEECC-CCCEEEEEEcCCc
Q 001567 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAES----ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRG 330 (1052)
Q Consensus 257 ~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~----~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp-Dg~~Lasg~~Dg~ 330 (1052)
..-| ...|.-.+.++..|+.+|.|.++|++.. +.+.+.+. |...|+|+.--. ++++|.+.+.+|+
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly---------h~Ssvtslq~Lq~s~q~LmaS~M~gk 322 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY---------HDSSVTSLQILQFSQQKLMASDMTGK 322 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE---------cCcchhhhhhhccccceEeeccCcCc
Confidence 3445 7788888999999999999999999863 12333332 888999988766 7889999999999
Q ss_pred EEEEEcCCCeE---EEEecccccCceeeeeEcCCCC-CCccceeeee---eeeEEecCCceEEEEec
Q 001567 331 LTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQD-CKYEPLMSGT---SMMQWDEYGYRLYAIEE 390 (1052)
Q Consensus 331 v~vWd~~~~~l---~~tl~~~~~~~v~s~~~sp~~~-~~~~~l~sg~---~~~~W~~~~~~l~~~~~ 390 (1052)
|++||..--++ +.+..|| |+..+.-|..- .....+++++ -.++|..+.++|+.+..
T Consensus 323 ikLyD~R~~K~~~~V~qYeGH----vN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 323 IKLYDLRATKCKKSVMQYEGH----VNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred eeEeeehhhhcccceeeeecc----cccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 99999865444 7788888 33333333221 1124455554 67899999999988764
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.15 E-value=0.2 Score=62.87 Aligned_cols=272 Identities=12% Similarity=0.086 Sum_probs=134.7
Q ss_pred eEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCC
Q 001567 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (1052)
Q Consensus 259 ~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~ 338 (1052)
.+++.|-.+..-+.++..+|.|.+-|..+ .. +..... -.++|.+++||||++.+|....++++.+-+-.
T Consensus 71 i~s~~fl~d~~~i~v~~~~G~iilvd~et-~~-~eivg~--------vd~GI~aaswS~Dee~l~liT~~~tll~mT~~- 139 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALGDIILVDPET-LE-LEIVGN--------VDNGISAASWSPDEELLALITGRQTLLFMTKD- 139 (1265)
T ss_pred eEEEEEecccceEEEEecCCcEEEEcccc-cc-eeeeee--------ccCceEEEeecCCCcEEEEEeCCcEEEEEecc-
Confidence 33899999999999999999999987765 22 222222 46789999999999999999888777654431
Q ss_pred CeEE--EEecc--cccCceeeeeEcCCCCCCccceeeee--eeeEEecCCceE-EE--EecCCcccEEEEec---cceee
Q 001567 339 CRLM--STIRQ--ISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRL-YA--IEEGSSERVLIFSF---GKCCL 406 (1052)
Q Consensus 339 ~~l~--~tl~~--~~~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l-~~--~~~~~~~~v~~~s~---~k~~~ 406 (1052)
-.++ ..+.. ...+..-.+-|-.. +.-..|+ ..+.-.....+- .- ....|. ..+++ |+.++
T Consensus 140 f~~i~E~~L~~d~~~~sk~v~VGwGrk-----eTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~---~~IsWRgDg~~fA 211 (1265)
T KOG1920|consen 140 FEPIAEKPLDADDERKSKFVNVGWGRK-----ETQFRGSEGRQAARQKIEKEKALEQIEQDDHK---TSISWRGDGEYFA 211 (1265)
T ss_pred ccchhccccccccccccccceeccccc-----ceeeecchhhhcccccccccccccchhhccCC---ceEEEccCCcEEE
Confidence 1111 11100 00000000001000 0000000 000000000000 00 000000 11111 22222
Q ss_pred e-----eccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeC---CceE-E
Q 001567 407 N-----RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL---HGLI-L 477 (1052)
Q Consensus 407 s-----~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~---dG~i-l 477 (1052)
. ......+++|+-. |.- +....|..+..| +++|-|.|..+|+-.. |+.| +
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~L---------------ns~se~~~~l~~-----~LsWkPsgs~iA~iq~~~sd~~Ivf 270 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GAL---------------NSTSEPVEGLQH-----SLSWKPSGSLIAAIQCKTSDSDIVF 270 (1265)
T ss_pred EEEEeccCCceeEEEeccc-chh---------------hcccCccccccc-----ceeecCCCCeEeeeeecCCCCcEEE
Confidence 1 1222567777643 111 111234445444 4899999999998643 4556 8
Q ss_pred EEccCCcEEEecCccceeeeEEEEEEEeCC--EEEEEEEecCCCeEEEEEeeCCCCCCcceeEEeecCCccE-EEEeeCC
Q 001567 478 YDIRQKKWRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPI-VMDVYED 554 (1052)
Q Consensus 478 wd~~s~~w~~f~~~~~e~~~~v~gl~W~~~--~li~~~~~~~~~~~elrly~~~~ld~~~~l~~~~~~~~~~-~~s~~~~ 554 (1052)
|.-+.-+-..|.....+++..|.+++|..+ .|++ .........|++|-..+..= .+.....+|.... .-+|...
T Consensus 271 fErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv--~~~~~e~~~v~lwt~~NyhW-YLKq~l~~~~~~~~~W~p~~~ 347 (1265)
T KOG1920|consen 271 FERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV--VTSNLENSLVQLWTTGNYHW-YLKQELQFSQKALLMWDPVTE 347 (1265)
T ss_pred EecCCccccccccCCcccccchheeeecCCCCceee--eecccccceEEEEEecCeEE-EEEEEEeccccccccccCCCc
Confidence 887765544454444444444889999744 4443 22223445599996642211 0111223333222 2244333
Q ss_pred -EEEEEEcCCeEEEEEEEEe
Q 001567 555 -YILVTYRPFDVHIFHVKLF 573 (1052)
Q Consensus 555 -~llv~~~d~~i~l~~~~~~ 573 (1052)
.+.+.+.+|...++++.-.
T Consensus 348 ~~L~v~~~sG~~~v~~~~~~ 367 (1265)
T KOG1920|consen 348 KTLHVLRESGQRLVRDFAWT 367 (1265)
T ss_pred eeEEEEecCCcEEEEEEEEe
Confidence 4555667888888777643
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.15 E-value=0.061 Score=58.95 Aligned_cols=94 Identities=13% Similarity=0.188 Sum_probs=60.6
Q ss_pred EEEEcC-CCCEEEEEeeCCe-EEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEE-----cCCcEEE
Q 001567 261 CASIAP-EQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-----KSRGLTV 333 (1052)
Q Consensus 261 ~va~sp-d~~~lAsgs~Dg~-V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~-----~Dg~v~v 333 (1052)
.++.+| +...+|++-.-|+ ..+||..+ ++....+...+-..-.+| -.|||||++|.+.- ..|.|-|
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~-g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgV 81 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRT-GQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGV 81 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCC-CceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEE
Confidence 367788 6777888888885 46899887 766665543110000123 68999999998863 3478999
Q ss_pred EEcC-CCeEEEEecccccCceeeeeEcCCC
Q 001567 334 WSVS-GCRLMSTIRQISLSSISSPIVKPNQ 362 (1052)
Q Consensus 334 Wd~~-~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (1052)
||+. +-+.+..+..++.. -..+.+.|++
T Consensus 82 yd~~~~~~ri~E~~s~GIG-PHel~l~pDG 110 (305)
T PF07433_consen 82 YDAARGYRRIGEFPSHGIG-PHELLLMPDG 110 (305)
T ss_pred EECcCCcEEEeEecCCCcC-hhhEEEcCCC
Confidence 9998 55556666554322 2334556665
No 314
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.13 E-value=0.0026 Score=67.35 Aligned_cols=262 Identities=13% Similarity=0.080 Sum_probs=131.5
Q ss_pred hcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCc--eee---cCCCCCCCceeeeEeeeeccccccccccceEEEEee
Q 001567 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK--SIQ---IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS 140 (1052)
Q Consensus 66 ~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 140 (1052)
+...+++|.|-.-|.+||+|...|.|.+|.-+.... ... +.+|..+=-.+.++ ...++ ...|.-+.+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSl--eieEK------in~I~w~~~ 96 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSL--EIEEK------INAIEWFDD 96 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhc--cHHHH------hhheeeecC
Confidence 345678999999999999999889999997654331 101 12222211111111 11111 112222322
Q ss_pred c-CCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccC-CCcceeecCCCCeeeccccCCCccEEEEE---
Q 001567 141 D-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFP-SNGLASVDTSGAFVSDHKFPISSAIIWLE--- 215 (1052)
Q Consensus 141 d-~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~-~~~l~s~~~~~~~~~~~~~~~~~~i~~i~--- 215 (1052)
. ...+++.+.|.++.+|..-....... +...+...-.++ ++.+.+..+ +.-..+.++...| +..
T Consensus 97 t~r~hFLlstNdktiKlWKiyeknlk~v-------a~nnls~~~~~~~~g~~~s~~~---l~lprls~hd~ii-aa~p~r 165 (460)
T COG5170 97 TGRNHFLLSTNDKTIKLWKIYEKNLKVV-------AENNLSDSFHSPMGGPLTSTKE---LLLPRLSEHDEII-AAKPCR 165 (460)
T ss_pred CCcceEEEecCCceeeeeeeecccchhh-------hccccccccccccCCCcCCHHH---hhcccccccceEE-Eeccce
Confidence 2 35788999999998864332211100 000111100111 111100000 0000011111111 110
Q ss_pred -e---cCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee------cCC-----CCeE-EEEEcCC-CCEEEEEeeCC
Q 001567 216 -L---CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGS-----GDAV-CASIAPE-QQILAVGTRRG 278 (1052)
Q Consensus 216 -~---~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~------~gh-----~~~v-~va~spd-~~~lAsgs~Dg 278 (1052)
| ++.-...+.+.+|.+.+++ ++|-.+.+|+......- ..| ...+ +..|+|. ...+.-.+..|
T Consensus 166 vyaNaH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG 244 (460)
T COG5170 166 VYANAHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKG 244 (460)
T ss_pred eccccceeEeeeeeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCC
Confidence 1 0111133456677776664 56778889976532110 122 2234 7788986 44566667889
Q ss_pred eEEEEecCCCCcee-----E--EEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCC-CeEEEEeccc
Q 001567 279 VVELYDLAESASLI-----R--TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQI 348 (1052)
Q Consensus 279 ~V~vwd~~~~~~~~-----~--~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~-~~l~~tl~~~ 348 (1052)
+|++-|++...-+. . ++.+.+...-.+-...|..+.|||+|+++++-+. -+|++||+.- ..++.|+.-|
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 99999997421111 0 1111111111223556888999999999998776 7999999964 3455565443
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.03 E-value=0.14 Score=56.29 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=42.8
Q ss_pred CCCeE-EEEEcCCCCEEEEEee-CCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 001567 256 SGDAV-CASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1052)
Q Consensus 256 h~~~v-~va~spd~~~lAsgs~-Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~ 327 (1052)
-.+.+ +|++++++.++|+.|- .|.+.+||..+ ++.+..... ..+..++-.+++ +++|.+.
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l----------~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPL----------PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeecccc----------CceeeeeecCCc-eEEeCCC
Confidence 35678 9999999998876664 57899999987 776665433 346677777777 5555444
No 316
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.99 E-value=0.23 Score=53.83 Aligned_cols=128 Identities=14% Similarity=0.174 Sum_probs=76.3
Q ss_pred EEEeeCCcEEEEEecCCc--------eeeeeecccce--e-cCCCCeEEEEEcCCCCEEE-EEeeCCeEEEEecCCCCce
Q 001567 224 FVLYSNGQLMSCSVSKKG--------LKLAEFIKIDK--E-LGSGDAVCASIAPEQQILA-VGTRRGVVELYDLAESASL 291 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~--------i~~w~~~~~~~--~-~gh~~~v~va~spd~~~lA-sgs~Dg~V~vwd~~~~~~~ 291 (1052)
+++.++|+++++...... +..++.. ++. . .+-..+-.++|+|+++.|. +-+..+.|..|+++..+..
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~ 169 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE 169 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC
T ss_pred EEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccc
Confidence 445778887777664322 2222222 111 1 1212233799999998665 5567789999998753331
Q ss_pred e---EEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEc
Q 001567 292 I---RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (1052)
Q Consensus 292 ~---~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~s 359 (1052)
+ +.+.. .+ .-.+..-.+++.++|+..++.+..+.|.+++.. ++++..+.-. ...+++++|.
T Consensus 170 ~~~~~~~~~--~~---~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fg 233 (246)
T PF08450_consen 170 LSNRRVFID--FP---GGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFG 233 (246)
T ss_dssp EEEEEEEEE---S---SSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEE
T ss_pred eeeeeeEEE--cC---CCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEE
Confidence 2 22211 10 012346789999999999998989999999998 5566666544 3467777773
No 317
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0052 Score=71.35 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=69.6
Q ss_pred ccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeecccceecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCC
Q 001567 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAE 287 (1052)
Q Consensus 209 ~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~ 287 (1052)
..+.-++|+|.+..++..+.+|.++....+ --|+|+...+ | .+.+ +++|.|||++||+|-.||+|++-|+.+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p----~-~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIP----G-ENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCC----C-CccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 357788999999999999999998887766 5678887643 1 2344 999999999999999999999999988
Q ss_pred CCceeEEEEeecCCCCCCCCCCeeEEEEC
Q 001567 288 SASLIRTVSLYDWGYSMDDTGPVSCIAWT 316 (1052)
Q Consensus 288 ~~~~~~~l~~~~~~~~~~h~g~V~~l~~S 316 (1052)
+..+..... .-..+|+++-|+
T Consensus 94 -~~~l~~~~~-------s~e~~is~~~w~ 114 (665)
T KOG4640|consen 94 -GGRLVSFLF-------SVETDISKGIWD 114 (665)
T ss_pred -CCceecccc-------ccccchheeecc
Confidence 443332111 024456666665
No 318
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.65 E-value=0.65 Score=54.25 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=55.2
Q ss_pred CCCEEEEEeCCceE-EEEccCCc--EEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCCCCCCcceeEE
Q 001567 463 DGMFLAVAGLHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCR 539 (1052)
Q Consensus 463 dG~~lavag~dG~i-lwd~~s~~--w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~elrly~~~~ld~~~~l~~ 539 (1052)
+|..+.+++.+|.+ ..|..+|+ |+.- . ... .........++.++++ +.+..|.+.+.. +..++++
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~-~~~--~~~~sp~v~~g~l~v~-----~~~G~l~~ld~~---tG~~~~~ 360 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQS-D-LLH--RLLTAPVLYNGYLVVG-----DSEGYLHWINRE---DGRFVAQ 360 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEccc-c-cCC--CcccCCEEECCEEEEE-----eCCCEEEEEECC---CCCEEEE
Confidence 45667777778888 88887764 5421 0 000 1122333456777766 333456666553 4567777
Q ss_pred eecCCccEEEE--eeCCEEEEEEcCCeEEEEE
Q 001567 540 KSLLAKPIVMD--VYEDYILVTYRPFDVHIFH 569 (1052)
Q Consensus 540 ~~~~~~~~~~s--~~~~~llv~~~d~~i~l~~ 569 (1052)
.++....+.-+ ..++.|++.+.||.+..++
T Consensus 361 ~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 361 QKVDSSGFLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred EEcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence 76643322222 2567899989999887765
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.011 Score=70.36 Aligned_cols=147 Identities=16% Similarity=0.276 Sum_probs=94.7
Q ss_pred EEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEE
Q 001567 135 VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (1052)
Q Consensus 135 v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i 214 (1052)
++|.+..++.++.|+.+|.|++..-++.....+.
T Consensus 42 is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~~---------------------------------------------- 75 (846)
T KOG2066|consen 42 ISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNFD---------------------------------------------- 75 (846)
T ss_pred HHHHHhhcceeeeccccceEEEEecCCccccccc----------------------------------------------
Confidence 4566666788999999999998776655421110
Q ss_pred EecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee--cCCCCeE-EEEEcCC-----CCEEEEEeeCCeEEEEecC
Q 001567 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPE-----QQILAVGTRRGVVELYDLA 286 (1052)
Q Consensus 215 ~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~gh~~~v-~va~spd-----~~~lAsgs~Dg~V~vwd~~ 286 (1052)
+++. .-+|.++++++.||++.+-...+.+.. ..-..++ +++++|+ .+.+++|+.-| +.++.-.
T Consensus 76 -~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~ 146 (846)
T KOG2066|consen 76 -HSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN 146 (846)
T ss_pred -cccc-------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhh
Confidence 0000 235666666666666555443333221 1224566 9999998 46788999888 7787643
Q ss_pred CCCceeE-EEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecc
Q 001567 287 ESASLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1052)
Q Consensus 287 ~~~~~~~-~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~ 347 (1052)
--+.... .++. -.|+|.++.|. |+++|=+++ -+|+|+|+..++.+..++.
T Consensus 147 wlgnk~~v~l~~--------~eG~I~~i~W~--g~lIAWand-~Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 147 WLGNKDSVVLSE--------GEGPIHSIKWR--GNLIAWAND-DGVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred hhcCccceeeec--------CccceEEEEec--CcEEEEecC-CCcEEEeccccceeeccCC
Confidence 2111111 1222 57999999997 678888776 4899999998877766654
No 320
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.57 E-value=0.0059 Score=43.40 Aligned_cols=30 Identities=30% Similarity=0.691 Sum_probs=28.7
Q ss_pred CCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 001567 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1052)
Q Consensus 306 h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd 335 (1052)
|.+.|++++|+|++..+++++.|+.+++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 889999999999999999999999999996
No 321
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.53 E-value=0.061 Score=49.65 Aligned_cols=94 Identities=19% Similarity=0.282 Sum_probs=61.1
Q ss_pred EeeCCc-EEEEEecCCceeeeeecccceecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCC
Q 001567 226 LYSNGQ-LMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (1052)
Q Consensus 226 ~s~dG~-~~~~~~~d~~i~~w~~~~~~~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~ 303 (1052)
+..||+ -+++++.|+.|++++......-..-.+.+ ++.-... ..+|.|.++|||-+|+-. .+..+ .+.
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR-iKS------ 79 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR-IKS------ 79 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee-ecc------
Confidence 445554 68889999999998765432212223445 6655555 679999999999999853 23332 221
Q ss_pred CCCCCCeeEEEECC---CCC-EEEEEEcCCcEE
Q 001567 304 MDDTGPVSCIAWTP---DNS-AFAVGWKSRGLT 332 (1052)
Q Consensus 304 ~~h~g~V~~l~~Sp---Dg~-~Lasg~~Dg~v~ 332 (1052)
...+.++++.. ||. -|++||.+|.|-
T Consensus 80 ---K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 80 ---KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 23366666654 443 799999998764
No 322
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.44 E-value=0.0023 Score=76.00 Aligned_cols=185 Identities=12% Similarity=0.115 Sum_probs=113.4
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEc-CC-c
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SR-G 330 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~-Dg-~ 330 (1052)
..|+... |++|+-+.+.|++|+-.|.|++|++.+ |........ |..+|+-+.=|-||..+.+.+. .. -
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~nc--------H~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNC--------HQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccc--------cccccccccccCCcceeeeeccccCch
Confidence 3556555 999999999999999999999999988 765555555 9999999999999986665443 23 5
Q ss_pred EEEEEcCC-CeEEEEecccccCceeeeeEcCCCCCCccceeeee-eeeEEecCCceEEEEecCCcccEEEEeccceeeee
Q 001567 331 LTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNR 408 (1052)
Q Consensus 331 v~vWd~~~-~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~ 408 (1052)
..+|+... +...+++.+. .++.|+... ....+-+.. ...+++.+++..+.+.-. .+...++.+.+++-
T Consensus 1169 saLW~~~s~~~~~Hsf~ed-----~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt---~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDED-----KAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLT---DTVTSSYSNNLAHF 1238 (1516)
T ss_pred HHHhccccccCcccccccc-----ceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcC---cchhhhhhcccccc
Confidence 78998854 3334454442 345555432 112222212 677899888765554211 12333344555566
Q ss_pred ccCCceee-----eEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceEEEEccC
Q 001567 409 GVSGMTYA-----RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQ 482 (1052)
Q Consensus 409 s~d~~v~~-----w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~ilwd~~s 482 (1052)
+++-+..+ ||+...+- ...|..-+. --.-.|+|.|..+++-+ -+||++|
T Consensus 1239 sP~D~LIlndGvLWDvR~~~a--------------------Ih~FD~ft~-~~~G~FHP~g~eVIINS----EIwD~RT 1292 (1516)
T KOG1832|consen 1239 SPCDTLILNDGVLWDVRIPEA--------------------IHRFDQFTD-YGGGGFHPSGNEVIINS----EIWDMRT 1292 (1516)
T ss_pred CCCcceEeeCceeeeeccHHH--------------------Hhhhhhhee-cccccccCCCceEEeec----hhhhhHH
Confidence 66555444 44432211 111211111 11246899999988754 2799876
No 323
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.42 E-value=0.0083 Score=64.78 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=76.9
Q ss_pred eeCCcEEEEEecCCceeeeeeccc---cee----cCCCCeE-EEEEcC-CCCEEEEEeeCCeEEEEecCCCCce---eEE
Q 001567 227 YSNGQLMSCSVSKKGLKLAEFIKI---DKE----LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASL---IRT 294 (1052)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~~---~~~----~gh~~~v-~va~sp-d~~~lAsgs~Dg~V~vwd~~~~~~~---~~~ 294 (1052)
...+.+++.|...+.|...|.... ..| .-|..+| |+..-. +++.|.+.+.+|+|++||.+. .++ +++
T Consensus 261 ~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~q 339 (425)
T KOG2695|consen 261 AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQ 339 (425)
T ss_pred cccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceee
Confidence 344566677777777666666532 122 3477888 776655 677777778999999999986 555 555
Q ss_pred EEeecCCCCCCCCCCeeEEEE-----CCCCCEEEEEEcCCcEEEEEcCCCeEEEEecc
Q 001567 295 VSLYDWGYSMDDTGPVSCIAW-----TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1052)
Q Consensus 295 l~~~~~~~~~~h~g~V~~l~~-----SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~ 347 (1052)
..+ | |+..+. .+....++++++|...+||++..+.+++++.-
T Consensus 340 YeG--------H---vN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 340 YEG--------H---VNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eec--------c---cccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 555 4 333333 34556788899999999999999999999875
No 324
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.41 E-value=0.04 Score=58.63 Aligned_cols=220 Identities=14% Similarity=0.188 Sum_probs=118.4
Q ss_pred CeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCce----eEEEEeec--CCC--CCCCCCCeeEEEECCCCC--EEEEEE
Q 001567 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESASL----IRTVSLYD--WGY--SMDDTGPVSCIAWTPDNS--AFAVGW 326 (1052)
Q Consensus 258 ~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~----~~~l~~~~--~~~--~~~h~g~V~~l~~SpDg~--~Lasg~ 326 (1052)
+.+ .|.|...|.++|+|...|.|.+|.-...-.+ ...++..+ +.| +.+-...|+.+.|-.++. .+....
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 445 8999999999999999999999986542211 11233322 112 122345689999987654 455566
Q ss_pred cCCcEEEEEcCCCe--------------------EEE-------Eeccc---------------ccCceeeeeEcCCCCC
Q 001567 327 KSRGLTVWSVSGCR--------------------LMS-------TIRQI---------------SLSSISSPIVKPNQDC 364 (1052)
Q Consensus 327 ~Dg~v~vWd~~~~~--------------------l~~-------tl~~~---------------~~~~v~s~~~sp~~~~ 364 (1052)
.|++|++|.+.... +.. .+.+| |..-++++.+..+.
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~-- 184 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK-- 184 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch--
Confidence 78999999875321 000 00011 12335566665555
Q ss_pred Cccceeeee--eeeEEecCCc---eEEEEecCCc-----ccE--EEEec--cceeeeeccCCceeeeEeeecCceEEEEe
Q 001567 365 KYEPLMSGT--SMMQWDEYGY---RLYAIEEGSS-----ERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (1052)
Q Consensus 365 ~~~~l~sg~--~~~~W~~~~~---~l~~~~~~~~-----~~v--~~~s~--~k~~~s~s~d~~v~~w~~~~~~~~l~~~~ 430 (1052)
+.++|+. .+-+|.++-- --++-...|. .-| ..|++ ...+.-.+..|.+++-|+.+.....
T Consensus 185 --et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd---- 258 (460)
T COG5170 185 --ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD---- 258 (460)
T ss_pred --heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc----
Confidence 7777765 7778987521 1122222221 011 23333 2233344566778887776543210
Q ss_pred cCCcchheeeeeccC-cccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEE
Q 001567 431 SEDTDELKILHLNLP-VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV 487 (1052)
Q Consensus 431 ~~~~~~~~w~~~~~p-~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~ 487 (1052)
.......-..-++- .-+.+-...|..+.||++|+|+++-.. -++ +||++..+-..
T Consensus 259 -n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pi 315 (460)
T COG5170 259 -NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPI 315 (460)
T ss_pred -CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCc
Confidence 00000000000000 011122235778999999999976543 345 99998765433
No 325
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.019 Score=64.08 Aligned_cols=203 Identities=11% Similarity=0.086 Sum_probs=124.0
Q ss_pred eCCcEEEEEecCCceeeeeecc--cce----ecCCCCeE-EEEEcCCCCEEEEEee-CCeEEEEecCCCCceeEEEEeec
Q 001567 228 SNGQLMSCSVSKKGLKLAEFIK--IDK----ELGSGDAV-CASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYD 299 (1052)
Q Consensus 228 ~dG~~~~~~~~d~~i~~w~~~~--~~~----~~gh~~~v-~va~spd~~~lAsgs~-Dg~V~vwd~~~~~~~~~~l~~~~ 299 (1052)
.-.++..+++-|+..+.|.-.. +.. ...|...+ +++.|-++.++++++. |..+|+||+.+ ...+.-++...
T Consensus 18 tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn-~DminmiKL~~ 96 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN-FDMINMIKLVD 96 (558)
T ss_pred ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec-cchhhhccccc
Confidence 4456788888899899886443 111 14566667 8899999999999888 99999999987 43333233211
Q ss_pred CCCCCCCCCCeeEEEECC-CCC-EEEEEE-cCCcEEEEEcCCCe-EEEEecccccCceeeeeEcCCCCCCccceeeee--
Q 001567 300 WGYSMDDTGPVSCIAWTP-DNS-AFAVGW-KSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (1052)
Q Consensus 300 ~~~~~~h~g~V~~l~~Sp-Dg~-~Lasg~-~Dg~v~vWd~~~~~-l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-- 373 (1052)
-.|.+.++ .+| |-. .+|++. +++.+.|+|-++.. ..+-..+.|.++|....+.|.+ ....|..
T Consensus 97 ------lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~----Ds~vSiD~~ 165 (558)
T KOG0882|consen 97 ------LPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG----DSAVSIDIS 165 (558)
T ss_pred ------CCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc----cceeecccc
Confidence 12332222 222 222 444444 45889999987643 4455555457888888888877 4444433
Q ss_pred -eeeEEecCCceEEEEecCCcccEEEEeccceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCC
Q 001567 374 -SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (1052)
Q Consensus 374 -~~~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~ 452 (1052)
-+..|.+++ . +....+ .-.|.+....+ ...+....
T Consensus 166 gmVEyWs~e~-~-~qfPr~----------------------~l~~~~K~eTd--------------------Ly~f~K~K 201 (558)
T KOG0882|consen 166 GMVEYWSAEG-P-FQFPRT----------------------NLNFELKHETD--------------------LYGFPKAK 201 (558)
T ss_pred ceeEeecCCC-c-ccCccc----------------------cccccccccch--------------------hhcccccc
Confidence 466787654 1 000000 00122211111 01111222
Q ss_pred CcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEE
Q 001567 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (1052)
Q Consensus 453 ~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~ 486 (1052)
....++.|||+|..+++-+.|..+ +++..+|+..
T Consensus 202 t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 345679999999999999999999 9999998754
No 326
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.35 E-value=4.4 Score=50.42 Aligned_cols=81 Identities=20% Similarity=0.085 Sum_probs=47.5
Q ss_pred cCccceEEEcCCc------cEEEEEeCCcEEEEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEee
Q 001567 67 EGENLQAVWSPDT------KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS 140 (1052)
Q Consensus 67 ~G~~~~v~wSPDg------~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 140 (1052)
.+++.|+-++|-| +.+|+|..+..+.+--...+...++...... . .-....-.+++..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~--------------~--~iPRSIl~~~~e~ 593 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSG--------------E--IIPRSILLTTFEG 593 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCC--------------C--ccchheeeEEeec
Confidence 4677888888753 3688888877766554432221111100000 0 1111222456666
Q ss_pred cCCeEEEEecCCcEEEEeccCcc
Q 001567 141 DNKHMLLGLSDGSLYSISWKGEF 163 (1052)
Q Consensus 141 d~~~llv~t~dg~v~~~~wd~~~ 163 (1052)
|+.++++++.||.+..+..+..+
T Consensus 594 d~~yLlvalgdG~l~~fv~d~~t 616 (1096)
T KOG1897|consen 594 DIHYLLVALGDGALLYFVLDINT 616 (1096)
T ss_pred cceEEEEEcCCceEEEEEEEccc
Confidence 78899999999999888777544
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.31 E-value=1.4 Score=50.72 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=46.9
Q ss_pred CceEEEEeeCCeEEEEEcCCcEEEeecCCceeEEEEEecChhh----------h-hh-cCccceEEEcCCccEEEEEeC-
Q 001567 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSES----------V-QR-EGENLQAVWSPDTKLIAVVTS- 87 (1052)
Q Consensus 21 ~~~vv~fSpdg~llA~~sd~~v~IW~~~~~~~~l~~~~r~~~s----------l-~~-~G~~~~v~wSPDg~~Lav~t~- 87 (1052)
...-..+||||+.+|-+.++.|.+++.. .+ ....+....+. . ++ .+...++-|||||+.||....
T Consensus 44 ~~~~~~~sP~g~~~~~v~~~nly~~~~~-~~-~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 44 KLQDAKWSPDGKYIAFVRDNNLYLRDLA-TG-QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TBSEEEE-SSSTEEEEEETTEEEEESST-TS-EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred ccccceeecCCCeeEEEecCceEEEECC-CC-CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 3456789999999999999999999874 33 22222222100 1 11 355678999999999988654
Q ss_pred CcEEEEEEEE
Q 001567 88 SLYLHIFKVQ 97 (1052)
Q Consensus 88 dg~l~i~~l~ 97 (1052)
+..|+.+.+.
T Consensus 122 ~~~v~~~~~~ 131 (353)
T PF00930_consen 122 EREVPEYPLP 131 (353)
T ss_dssp -TTS-EEEEE
T ss_pred CcCCceEEee
Confidence 4456666664
No 328
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.28 E-value=1.1 Score=52.40 Aligned_cols=75 Identities=12% Similarity=0.031 Sum_probs=40.8
Q ss_pred CEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC--CCCEEEEEEcCCcEEEEEcCCCeEEEEe
Q 001567 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (1052)
Q Consensus 269 ~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp--Dg~~Lasg~~Dg~v~vWd~~~~~l~~tl 345 (1052)
..+.+++.+|.+..+|.++ ++.+-....... ...........+.-+| .+..+.+++.+|.+...|..+++...+.
T Consensus 206 ~~v~~~~~~g~v~a~d~~~-G~~~W~~~~~~~-~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQ-GQLIWQQRISQP-TGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CEEEEEcCCCEEEEEEccC-ChhhheeccccC-CCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 3566778889998888877 654332221000 0000000111122233 2445666677899999999888766543
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.76 Score=55.89 Aligned_cols=115 Identities=8% Similarity=0.098 Sum_probs=72.0
Q ss_pred EEEEeeCCcEEEEEecCCceeeeeecc----ccee---cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEE
Q 001567 223 LFVLYSNGQLMSCSVSKKGLKLAEFIK----IDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRT 294 (1052)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~i~~w~~~~----~~~~---~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~ 294 (1052)
+++++.|=+.+++|..+|.+-...+.- +.+. ..-.++| .+++..+++.+.....-..|.+|.+...+....+
T Consensus 130 ~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ 209 (933)
T KOG2114|consen 130 SLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKV 209 (933)
T ss_pred EEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceee
Confidence 345556666666666666655443321 1111 1124566 9999999888555555678999999742212333
Q ss_pred EEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEec
Q 001567 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1052)
Q Consensus 295 l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~ 346 (1052)
+.. |..+++|.++++-...+++|+. ..+.+++..+.....++.
T Consensus 210 ld~--------~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 210 LDN--------NGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred ecc--------CCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 444 7788999999986554555554 589999998766555554
No 330
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.12 E-value=0.48 Score=50.73 Aligned_cols=109 Identities=19% Similarity=0.187 Sum_probs=63.1
Q ss_pred CCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEe
Q 001567 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (1052)
Q Consensus 266 pd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl 345 (1052)
+++..+.+++.++.+..||..+ ++.+-.... .+++...- ..++..+.++..|+.+..+|..+|+...+.
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~---------~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKT-GKVLWRFDL---------PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTT-SEEEEEEEC---------SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred EeCCEEEEEcCCCEEEEEECCC-CCEEEEeec---------ccccccee-eecccccccccceeeeEecccCCcceeeee
Confidence 3555666778999999999987 776655554 11111111 234566677778889999998888877763
Q ss_pred -cccc-c-C--ceeeeeEcCCCCCCccceeee--eeeeEEecCCceEEEEec
Q 001567 346 -RQIS-L-S--SISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEE 390 (1052)
Q Consensus 346 -~~~~-~-~--~v~s~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~ 390 (1052)
.... . . ....+.+. + ...++.. ..+..+++.+|+++-...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 103 YLTSSPPAGVRSSSSPAVD--G---DRLYVGTSSGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp EE-SSCTCSTB--SEEEEE--T---TEEEEEETCSEEEEEETTTTEEEEEEE
T ss_pred ccccccccccccccCceEe--c---CEEEEEeccCcEEEEecCCCcEEEEee
Confidence 3220 0 0 11112222 2 1233322 277788888777655443
No 331
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.04 E-value=0.05 Score=64.96 Aligned_cols=68 Identities=19% Similarity=0.348 Sum_probs=59.1
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcC
Q 001567 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (1052)
Q Consensus 261 ~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~ 337 (1052)
+++|+|..-.||.|..-|.+.+|...+ +..++... .|+.+|.-+.|||||..|.++..=|.+.+|...
T Consensus 64 SLCWHpe~~vLa~gwe~g~~~v~~~~~--~e~htv~~-------th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 64 SLCWHPEEFVLAQGWEMGVSDVQKTNT--TETHTVVE-------THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhccChHHHHHhhccccceeEEEecCC--ceeeeecc-------CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 789999999999999999999999865 33444433 399999999999999999999999999999875
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.02 E-value=0.33 Score=57.70 Aligned_cols=114 Identities=14% Similarity=0.117 Sum_probs=74.5
Q ss_pred eEEEEeeCCeEEEEEc-CCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCc
Q 001567 23 QIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1052)
Q Consensus 23 ~vv~fSpdg~llA~~s-d~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~ 101 (1052)
..-+++..++++|.++ .+.|++++-. +...-.++ .-..+|.....+.|++..++|.||..|.|.+|.++.+..
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~--~~~~~~~~----~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRH--TGEMRKLK----NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecC--chhhhccc----ccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 3356777889999985 5678777664 32222221 111456677888999999999999999999999985332
Q ss_pred e--eecCCCCCCCceeeeEeeeeccccccccccceEEEEee--cCCeEEEEecCCcEEEEeccC
Q 001567 102 S--IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS--DNKHMLLGLSDGSLYSISWKG 161 (1052)
Q Consensus 102 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--d~~~llv~t~dg~v~~~~wd~ 161 (1052)
. .+.. .+. +.+...|+|++. ++..+++|-+.|.|.....+.
T Consensus 111 ~~~~~~t----------------~~d---~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDLDYVT----------------PCD---KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred Ccceeec----------------ccc---ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 1110 011 112345777755 556788888889888876664
No 333
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.93 E-value=0.13 Score=60.10 Aligned_cols=66 Identities=15% Similarity=0.122 Sum_probs=42.5
Q ss_pred EEeeCCeEEEEE---cCC--cEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEe-CCcEEEEEEEEec
Q 001567 26 YFKVNNGLLLIA---SPC--HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQIT 99 (1052)
Q Consensus 26 ~fSpdg~llA~~---sd~--~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t-~dg~l~i~~l~~~ 99 (1052)
+++||++.++-. ..+ .+.+++.+....+ ..+...|.+..-.|||||++||.+. .+|...||-.+..
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~--------~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP--------VILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccc--------eeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 578998876654 233 4888888632211 1122357777899999999877654 6677777666543
No 334
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.80 E-value=0.062 Score=62.67 Aligned_cols=73 Identities=12% Similarity=0.152 Sum_probs=54.3
Q ss_pred CceEEEEeeCCeEEEEE-cCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEec
Q 001567 21 SQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1052)
Q Consensus 21 ~~~vv~fSpdg~llA~~-sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~ 99 (1052)
..-+.++||+...|+.+ .|++|.+||.. .+ ++...+.. =..+.++|.|||..++||+..|.+.+||+..+
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~-~~--~t~~~ka~------~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTT-RG--VTLLAKAE------FIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcC-CC--eeeeeeec------ccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 34557788998777776 69999999986 33 22222221 11358999999999999999999999999866
Q ss_pred Cce
Q 001567 100 EKS 102 (1052)
Q Consensus 100 ~~~ 102 (1052)
.-.
T Consensus 332 pi~ 334 (545)
T PF11768_consen 332 PIK 334 (545)
T ss_pred ccc
Confidence 543
No 335
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.67 E-value=0.13 Score=62.39 Aligned_cols=174 Identities=17% Similarity=0.106 Sum_probs=110.3
Q ss_pred CCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecc
Q 001567 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1052)
Q Consensus 268 ~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~ 347 (1052)
+..+..|+--..+..+|+.+ .+..++... ..+.|+-++ .+++.+.+|...|+|.+-|..+.+.++++..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~-~~e~r~~~v--------~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a 215 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNT-EKETRTTNV--------SASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDA 215 (1118)
T ss_pred Ccceeecchhhheeeeeccc-ceeeeeeec--------cCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeec
Confidence 44555665555677788876 555554443 344466665 4688999999999999999999999999998
Q ss_pred cccCceeeeeEcCCCCCCccceeeee------------eeeEEecCCceEEEEecCC-cccEEEEec--cceeeeeccCC
Q 001567 348 ISLSSISSPIVKPNQDCKYEPLMSGT------------SMMQWDEYGYRLYAIEEGS-SERVLIFSF--GKCCLNRGVSG 412 (1052)
Q Consensus 348 ~~~~~v~s~~~sp~~~~~~~~l~sg~------------~~~~W~~~~~~l~~~~~~~-~~~v~~~s~--~k~~~s~s~d~ 412 (1052)
| .+.++.... .| +.+++++ -+++||....+.+.-..-+ ...++.|.+ ...++..+..|
T Consensus 216 H-s~siSDfDv--~G----NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sG 288 (1118)
T KOG1275|consen 216 H-SGSISDFDV--QG----NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSG 288 (1118)
T ss_pred c-ccceeeeec--cC----CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEeccc
Confidence 8 666665443 33 5555554 3566777666554333211 123355555 44445555555
Q ss_pred ceeeeEeeecCceEEEEecCCcchheeeeeccC--c-ccccCCCc-EEEEEEccCCCEEEEEeCCceE-EEE
Q 001567 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLP--V-SYISQNWP-VQHVAASKDGMFLAVAGLHGLI-LYD 479 (1052)
Q Consensus 413 ~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p--~-~~~~h~~~-V~~va~SpdG~~lavag~dG~i-lwd 479 (1052)
....-+...-.+ | . .+..-+++ +....+|++|+.+|.|..+|.+ +|.
T Consensus 289 q~q~vd~~~lsN--------------------P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 289 QFQFVDTATLSN--------------------PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceeeccccccCC--------------------CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 555444211111 1 0 11122333 8889999999999999999999 997
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.60 E-value=0.052 Score=64.77 Aligned_cols=105 Identities=20% Similarity=0.310 Sum_probs=77.6
Q ss_pred EEEEcCCCCEEEEEe----eCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 001567 261 CASIAPEQQILAVGT----RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1052)
Q Consensus 261 ~va~spd~~~lAsgs----~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~ 336 (1052)
-.+|+|...++|+++ ..|.|.||- ++ |++-+... ..-.+++++|+|.--.||+||+-|.+-+|..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dt-GEPqr~Vt---------~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DT-GEPQRDVT---------YPVHATSLCWHPEEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cC-CCCCcccc---------cceehhhhccChHHHHHhhccccceeEEEec
Confidence 457888888888876 357888885 33 44322111 1223577999999999999999999999998
Q ss_pred CCCeEEEEecccccCceeeeeEcCCCCCCccceeeee---eeeEEecC
Q 001567 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (1052)
Q Consensus 337 ~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~---~~~~W~~~ 381 (1052)
.+.+ .++...-|..++..+.||++| ..++++. .+..|..+
T Consensus 89 ~~~e-~htv~~th~a~i~~l~wS~~G----~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 89 NTTE-THTVVETHPAPIQGLDWSHDG----TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCce-eeeeccCCCCCceeEEecCCC----CeEEEcCCCceeEEEEee
Confidence 7754 455544348889999999999 7888775 67788654
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.57 E-value=0.3 Score=58.49 Aligned_cols=104 Identities=8% Similarity=-0.023 Sum_probs=68.5
Q ss_pred EEEeeCCcEEEEEec-CCceeeeeeccccee---------------cCCCCeEEEEEcCCCCEEEEEeeCCeEEEEecCC
Q 001567 224 FVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE---------------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~-d~~i~~w~~~~~~~~---------------~gh~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~ 287 (1052)
+.++|||+++++++. +.++.+.|..+.+.+ .--.++...+|.++|....+-.-|..|-.|+++.
T Consensus 326 V~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 326 VNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 457999998777664 677888877654321 1113455789999999888889999999999875
Q ss_pred C-----Cce-eEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 001567 288 S-----ASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1052)
Q Consensus 288 ~-----~~~-~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~ 327 (1052)
. +.. ...+...+..|.++|.-....=.-.|||++|++...
T Consensus 406 a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 406 AIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred HHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 1 111 123333444566666543333344689999988654
No 338
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.54 E-value=1.8 Score=49.69 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=38.5
Q ss_pred CCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeE
Q 001567 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (1052)
Q Consensus 277 Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l 341 (1052)
.+...|||+.+ ++ +..+.. ..+.+....|||||+.+|-... +.|.+++..++..
T Consensus 22 ~~~y~i~d~~~-~~-~~~l~~--------~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~ 75 (353)
T PF00930_consen 22 KGDYYIYDIET-GE-ITPLTP--------PPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQE 75 (353)
T ss_dssp EEEEEEEETTT-TE-EEESS---------EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEE
T ss_pred ceeEEEEecCC-Cc-eEECcC--------CccccccceeecCCCeeEEEec-CceEEEECCCCCe
Confidence 45788999986 43 222222 2467889999999999998875 7899999877743
No 339
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.42 E-value=0.02 Score=68.46 Aligned_cols=148 Identities=15% Similarity=0.194 Sum_probs=91.7
Q ss_pred CCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee-----eeeEEe
Q 001567 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-----SMMQWD 379 (1052)
Q Consensus 305 ~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~-----~~~~W~ 379 (1052)
.|+..-+|++||.+.+.|++|+..|.|+++++.+|....+...| .+.++.+.-+.+| ..+.+.+ -..+|+
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-~SavT~vePs~dg----s~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-QSAVTLVEPSVDG----STQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-ccccccccccCCc----ceeeeeccccCchHHHhc
Confidence 48889999999999999999999999999999999888888888 6778888777776 4333322 345687
Q ss_pred cCC-ceEEEEecCCcccEEEEec-cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccc----cCCC
Q 001567 380 EYG-YRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI----SQNW 453 (1052)
Q Consensus 380 ~~~-~~l~~~~~~~~~~v~~~s~-~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~----~h~~ 453 (1052)
... +.......+ +.-+.|+- ...-+-|.......++|+.++.. ..+|. +.+.
T Consensus 1174 ~~s~~~~~Hsf~e--d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~--------------------l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDE--DKAVKFSNSLQFRALGTEADDALLYDVQTCSP--------------------LQTYLTDTVTSSY 1231 (1516)
T ss_pred cccccCccccccc--cceeehhhhHHHHHhcccccceEEEecccCcH--------------------HHHhcCcchhhhh
Confidence 643 222222111 11122222 11111122222345566555432 12221 2233
Q ss_pred cEEEEEEccCCCEEEEEeCCceEEEEccCC
Q 001567 454 PVQHVAASKDGMFLAVAGLHGLILYDIRQK 483 (1052)
Q Consensus 454 ~V~~va~SpdG~~lavag~dG~ilwd~~s~ 483 (1052)
.=+++.|||+.+++. .|| ++||++..
T Consensus 1232 ~~n~a~FsP~D~LIl---ndG-vLWDvR~~ 1257 (1516)
T KOG1832|consen 1232 SNNLAHFSPCDTLIL---NDG-VLWDVRIP 1257 (1516)
T ss_pred hccccccCCCcceEe---eCc-eeeeeccH
Confidence 346789999999886 455 56998764
No 340
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.41 E-value=4.9 Score=43.40 Aligned_cols=215 Identities=15% Similarity=0.142 Sum_probs=107.9
Q ss_pred CCcEEEEEecCCceeeeeeccccee-cCCCCeEEEEEc-CCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCC
Q 001567 229 NGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVCASIA-PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (1052)
Q Consensus 229 dG~~~~~~~~d~~i~~w~~~~~~~~-~gh~~~v~va~s-pd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h 306 (1052)
+|.++++....+.+..++....... .....+..+++. ++++++++ ..+ .+.++|..+ ++......... ....
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~-g~~~~~~~~~~---~~~~ 84 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVA-DSG-GIAVVDPDT-GKVTVLADLPD---GGVP 84 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEE-ETT-CEEEEETTT-TEEEEEEEEET---TCSC
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEE-EcC-ceEEEecCC-CcEEEEeeccC---CCcc
Confidence 6777777777777777766554432 112236677888 67655554 444 456668876 54333332210 0002
Q ss_pred CCCeeEEEECCCCCEEEEEEcC--------CcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCcccee-eee---e
Q 001567 307 TGPVSCIAWTPDNSAFAVGWKS--------RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM-SGT---S 374 (1052)
Q Consensus 307 ~g~V~~l~~SpDg~~Lasg~~D--------g~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~-sg~---~ 374 (1052)
....+.+++.|||++.++.... |.+..++.. ++......+ ....+.++|+|++ +.+. +-+ .
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~dg----~~lyv~ds~~~~ 157 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSPDG----KTLYVADSFNGR 157 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEETTS----SEEEEEETTTTE
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cccccceEECCcc----hheeecccccce
Confidence 3457899999999977776644 346666666 343333222 3456788999987 4433 222 3
Q ss_pred eeEEecC--CceEEEEecCCcccE-EEEeccc-eeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCccccc
Q 001567 375 MMQWDEY--GYRLYAIEEGSSERV-LIFSFGK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (1052)
Q Consensus 375 ~~~W~~~--~~~l~~~~~~~~~~v-~~~s~~k-~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~ 450 (1052)
+..++.+ +.++-. .++ ..+.... ..-....|..-++|....+..++..+..... ....+.+|.
T Consensus 158 i~~~~~~~~~~~~~~------~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~---~~~~i~~p~---- 224 (246)
T PF08450_consen 158 IWRFDLDADGGELSN------RRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK---LLREIELPV---- 224 (246)
T ss_dssp EEEEEEETTTCCEEE------EEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC---EEEEEE-SS----
T ss_pred eEEEeccccccceee------eeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc---EEEEEcCCC----
Confidence 3333332 221100 011 1111111 1111122333356777667777766654311 223333442
Q ss_pred CCCcEEEEEE-ccCCCEEEEEe
Q 001567 451 QNWPVQHVAA-SKDGMFLAVAG 471 (1052)
Q Consensus 451 h~~~V~~va~-SpdG~~lavag 471 (1052)
..+.+++| -+|++.|.+.+
T Consensus 225 --~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 --PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SSEEEEEEESTTSSEEEEEE
T ss_pred --CCEEEEEEECCCCCEEEEEe
Confidence 24788999 46766666544
No 341
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.35 Score=54.42 Aligned_cols=125 Identities=11% Similarity=0.077 Sum_probs=85.4
Q ss_pred eEEEEeeCC----cEEEEEecCCceeeeeeccccee-----cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCce
Q 001567 222 LLFVLYSNG----QLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASL 291 (1052)
Q Consensus 222 ~~~~~s~dG----~~~~~~~~d~~i~~w~~~~~~~~-----~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~ 291 (1052)
.+.++...| .+.+....++.+.+.|.....+. .-|..+| ++.+++-+..+.++...|.|.-|..+.+-+.
T Consensus 100 ~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 100 FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence 344555556 34444445666777776533221 3488999 9999999999999999999999998631111
Q ss_pred eE-----EEEee-c-CCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecc
Q 001567 292 IR-----TVSLY-D-WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1052)
Q Consensus 292 ~~-----~l~~~-~-~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~ 347 (1052)
.+ .++.. + ++. +-..+...++.|||+|..+++-..|..|+++...+++++..+.+
T Consensus 180 Pr~~l~~~~K~eTdLy~f-~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGF-PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred ccccccccccccchhhcc-cccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 11 11110 0 011 11345678999999999999999999999999999988776653
No 342
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.96 E-value=0.038 Score=38.98 Aligned_cols=31 Identities=26% Similarity=0.549 Sum_probs=27.8
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEe
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYD 284 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd 284 (1052)
..|.+.+ ++.|+++++++++|+.||.+++|+
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3567788 999999999999999999999996
No 343
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.52 E-value=4.3 Score=43.22 Aligned_cols=183 Identities=14% Similarity=0.068 Sum_probs=95.6
Q ss_pred eeCCcEEEEEecCCceeeeeeccccee--cCCCCeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEE-EeecCCCC
Q 001567 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTV-SLYDWGYS 303 (1052)
Q Consensus 227 s~dG~~~~~~~~d~~i~~w~~~~~~~~--~gh~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l-~~~~~~~~ 303 (1052)
.+++..++++..++.+..+|..+++.. ....+.+.......+..+.+++.|+.+..+|..+ ++.+... .... +
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~-~-- 108 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKT-GKVLWSIYLTSS-P-- 108 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTT-SCEEEEEEE-SS-C--
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCC-cceeeeeccccc-c--
Confidence 334555555567777777777665432 1111222011123455667777889999999887 7766553 3210 0
Q ss_pred CCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCce-----------eeeeEcCCCCCCccceeee
Q 001567 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI-----------SSPIVKPNQDCKYEPLMSG 372 (1052)
Q Consensus 304 ~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v-----------~s~~~sp~~~~~~~~l~sg 372 (1052)
-.+.....+...+|..++++..++.+..+|..+|+.+...... .... ..+.+. ++ ..+++.
T Consensus 109 --~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~----~v~~~~ 180 (238)
T PF13360_consen 109 --PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDINGSPVIS-DG----RVYVSS 180 (238)
T ss_dssp --TCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEEEEEECC-TT----EEEEEC
T ss_pred --ccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccccceEEE-CC----EEEEEc
Confidence 0111222333334888899998999999999999887776553 2111 111111 11 333332
Q ss_pred e--eeeEEecCCceEEEEecCCcccEEE-Eec-cceeeeeccCCceeeeEeeecC
Q 001567 373 T--SMMQWDEYGYRLYAIEEGSSERVLI-FSF-GKCCLNRGVSGMTYARQVIYGE 423 (1052)
Q Consensus 373 ~--~~~~W~~~~~~l~~~~~~~~~~v~~-~s~-~k~~~s~s~d~~v~~w~~~~~~ 423 (1052)
. .+...+..+++..-... ...+.. ... +..++.++.++.+..+|+.+++
T Consensus 181 ~~g~~~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 181 GDGRVVAVDLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp CTSSEEEEETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CCCeEEEEECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 2 22334777666332222 122222 222 5555555567777777765544
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.48 E-value=5.7 Score=46.17 Aligned_cols=93 Identities=20% Similarity=0.150 Sum_probs=51.7
Q ss_pred cceEEEcCCccEEEEEeCCcEEEEEEEEecCcee---ecCC---------CCCCCceeeeEe--------eeeccccccc
Q 001567 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI---QIGG---------KQPSGLFFIKIS--------LVLNEQLPFA 129 (1052)
Q Consensus 70 ~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~---~~~~---------~~~~~~~~~~~~--------~~~~~~~~~~ 129 (1052)
+..+.|+++..-+|+++..|.|.||.....+... .... +......+.+++ -.+.-...+.
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 5689999999999999999999999987543211 0000 000011122221 0111112234
Q ss_pred cccceEEEEeecC-CeEEEEecCCcEEEEeccCc
Q 001567 130 EKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGE 162 (1052)
Q Consensus 130 ~~~~~v~~i~~d~-~~llv~t~dg~v~~~~wd~~ 162 (1052)
...++|+++...+ ..+++|..+|.+.+++..+.
T Consensus 84 ~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGP 117 (395)
T PF08596_consen 84 AKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGP 117 (395)
T ss_dssp --S-SEEEEEE-BTSEEEEEETTSEEEEEETTTT
T ss_pred ccCCcEeEEecCCCcEEEEEecCCcEEEEECCCC
Confidence 4467888887644 67888999999999877654
No 345
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=0.097 Score=64.64 Aligned_cols=75 Identities=23% Similarity=0.378 Sum_probs=59.2
Q ss_pred CCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEe
Q 001567 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (1052)
Q Consensus 266 pd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl 345 (1052)
-.+.++|.|+..|.|-..|+..+-.. ...+ + .-.++|++++|+.||+.++.|-.+|.|.+||+..++..+.+
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~--~~~n-e-----~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGP--LHQN-E-----RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccch--hhcC-C-----ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence 35668999999999999988642111 1111 1 14789999999999999999999999999999998888877
Q ss_pred ccc
Q 001567 346 RQI 348 (1052)
Q Consensus 346 ~~~ 348 (1052)
..+
T Consensus 169 ~e~ 171 (1206)
T KOG2079|consen 169 TEH 171 (1206)
T ss_pred eec
Confidence 766
No 346
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.27 E-value=1.2 Score=54.40 Aligned_cols=68 Identities=19% Similarity=0.343 Sum_probs=48.4
Q ss_pred ccCCCEEEEEeCCce-----E-EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeCC
Q 001567 461 SKDGMFLAVAGLHGL-----I-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (1052)
Q Consensus 461 SpdG~~lavag~dG~-----i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~elrly~~~ 529 (1052)
.-+|...|+||.||. + .||..+.+|.....-...+ ..+....+.+...++|+++.......+..|+..
T Consensus 473 ~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r-s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 473 VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR-SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc-ccccEEEECCEEEEEecccCccccceeEEcCCC
Confidence 348899999998883 6 7999999999875444333 223345556666777877777777778888663
No 347
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.26 E-value=3.9 Score=43.94 Aligned_cols=212 Identities=17% Similarity=0.180 Sum_probs=107.3
Q ss_pred EEcCCCCEEEEEee-----CCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcC
Q 001567 263 SIAPEQQILAVGTR-----RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (1052)
Q Consensus 263 a~spd~~~lAsgs~-----Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~ 337 (1052)
.|||||++|-..-. -|.|-|||.+..-+.+..+.. |-=.-..+.|.+||+.++++. |+|..---+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t--------~GiGpHev~lm~DGrtlvvan--GGIethpdf 189 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFST--------HGIGPHEVTLMADGRTLVVAN--GGIETHPDF 189 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccccc--------CCcCcceeEEecCCcEEEEeC--Cceeccccc
Confidence 58999999876433 378999998753344444444 544447899999999999875 677766333
Q ss_pred CCeEEEEecccccCceeeeeEcCCCCCCccceeeeeeeeEEecCCceEEEEecCCcccEEEEeccceeeeeccCCceeee
Q 001567 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYAR 417 (1052)
Q Consensus 338 ~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w 417 (1052)
+...+ .+... -|. + .+-+..+++++....-. .....++ .+. +..+.|+++ |
T Consensus 190 gR~~l-NldsM----------ePS-------l------vlld~atG~liekh~Lp-~~l~~lS-iRH-ld~g~dgtv--w 240 (366)
T COG3490 190 GRTEL-NLDSM----------EPS-------L------VLLDAATGNLIEKHTLP-ASLRQLS-IRH-LDIGRDGTV--W 240 (366)
T ss_pred Ccccc-chhhc----------Ccc-------E------EEEeccccchhhhccCc-hhhhhcc-eee-eeeCCCCcE--E
Confidence 33211 11100 010 0 01122233332221100 0000000 011 112334443 2
Q ss_pred EeeecCceEEEEecCCcchhe--------eeeeccCc-ccccCCCcEEEEEEccCCCEEEEEeCCceE--EEEccCCcEE
Q 001567 418 QVIYGEDRLLVVQSEDTDELK--------ILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQKKWR 486 (1052)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~~~~--------w~~~~~p~-~~~~h~~~V~~va~SpdG~~lavag~dG~i--lwd~~s~~w~ 486 (1052)
--.+- --..+|.+.+. .+.+.+|. +...-...|-+++.+.+..+++..+..|.. +||..||.-.
T Consensus 241 fgcQy-----~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv 315 (366)
T COG3490 241 FGCQY-----RGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVV 315 (366)
T ss_pred EEEEe-----eCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEE
Confidence 21110 00011111110 12233342 222334457789998888888888888876 9999999754
Q ss_pred EecCccceeeeE-EEEEEEeCCEEEEEEEecCCCeEEEEEeeCC
Q 001567 487 VFGDITQEQKIQ-SKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (1052)
Q Consensus 487 ~f~~~~~e~~~~-v~gl~W~~~~li~~~~~~~~~~~elrly~~~ 529 (1052)
.- ..+. +.|+.-.++..++. +....+++|++.
T Consensus 316 ~~------a~l~daaGva~~~~gf~vs-----sg~G~~~~~s~~ 348 (366)
T COG3490 316 SE------AALPDAAGVAAAKGGFAVS-----SGQGRIIFYSRA 348 (366)
T ss_pred ec------ccccccccceeccCceEEe-----cCCceEEecccc
Confidence 32 1122 45666655544443 456788888774
No 348
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.26 E-value=12 Score=42.12 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=86.8
Q ss_pred ceEEEEeeCCcEEEEEec-CCceeeeeecccceecCCCCeE--EEEEcCCCCEEEEEeeCCeEEEEecCCCC-ceeEEEE
Q 001567 221 RLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKELGSGDAV--CASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVS 296 (1052)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~-d~~i~~w~~~~~~~~~gh~~~v--~va~spd~~~lAsgs~Dg~V~vwd~~~~~-~~~~~l~ 296 (1052)
..|..++.||+++-..-+ ++.... ..+ +....-.+++ .-++...+..+..-+-+|.|+--|+.... +....++
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~--~~t-~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~ 224 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQ--KST-KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS 224 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEE--EEE-EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred CceEEEecCCceEEEEECCCCCEeE--eec-cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence 466777888887766665 343331 111 1111112333 44566666666667899998888876522 1222222
Q ss_pred ee-------cCCCCCCCCCCeeEEEECCCCCEEEEEE--------cCC--cEEEEEcCCCeEEEEecccccCceeeeeEc
Q 001567 297 LY-------DWGYSMDDTGPVSCIAWTPDNSAFAVGW--------KSR--GLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (1052)
Q Consensus 297 ~~-------~~~~~~~h~g~V~~l~~SpDg~~Lasg~--------~Dg--~v~vWd~~~~~l~~tl~~~~~~~v~s~~~s 359 (1052)
.. .| ..|.-.-+++++..+.|.+.- +|+ .|-++|+.+++.+..+.-. ..+.++..+
T Consensus 225 ~~t~~e~~~~W-----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vs 297 (342)
T PF06433_consen 225 LLTDAEKADGW-----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVS 297 (342)
T ss_dssp SS-HHHHHTTE-----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEE
T ss_pred ccCccccccCc-----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEc
Confidence 10 11 234445678877665555431 122 4677788999998888742 357788998
Q ss_pred CCCCCCcccee---ee--eeeeEEecCCceEEEEec
Q 001567 360 PNQDCKYEPLM---SG--TSMMQWDEYGYRLYAIEE 390 (1052)
Q Consensus 360 p~~~~~~~~l~---sg--~~~~~W~~~~~~l~~~~~ 390 (1052)
.+. ++++ ++ ..+.++|..+++++....
T Consensus 298 qd~----~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 298 QDD----KPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp SSS----S-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred cCC----CcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 876 4433 22 268889999998887764
No 349
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=93.91 E-value=1.2 Score=54.62 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=63.8
Q ss_pred CCceeeeeeccccee---cCCCCeEEEEEcCCC-CEEEEEeeCCeEEEEecCCCCce-eEEEEeecCCCCCCCCCCeeEE
Q 001567 239 KKGLKLAEFIKIDKE---LGSGDAVCASIAPEQ-QILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCI 313 (1052)
Q Consensus 239 d~~i~~w~~~~~~~~---~gh~~~v~va~spd~-~~lAsgs~Dg~V~vwd~~~~~~~-~~~l~~~~~~~~~~h~g~V~~l 313 (1052)
|.-+++||...-+.+ .-+-++--+.|.|.- ..+|+.+..|...+-|..+-+.+ ........ -...+..+
T Consensus 245 D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p------~~s~i~~f 318 (1118)
T KOG1275|consen 245 DPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP------NGSGISAF 318 (1118)
T ss_pred cchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEcc------CCCcceeE
Confidence 455788988765433 234444567888874 56889999999999884331222 22222210 23348999
Q ss_pred EECCCCCEEEEEEcCCcEEEEEc
Q 001567 314 AWTPDNSAFAVGWKSRGLTVWSV 336 (1052)
Q Consensus 314 ~~SpDg~~Lasg~~Dg~v~vWd~ 336 (1052)
.+|++|..+|.|..+|.|-+|.-
T Consensus 319 DiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 319 DISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EecCCCceEEEecccCcEeeecC
Confidence 99999999999999999999973
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.90 E-value=6.1 Score=42.72 Aligned_cols=123 Identities=11% Similarity=0.136 Sum_probs=66.8
Q ss_pred cEEEEEecCCcceEEEEeeCCcEEEEEecCCce-eeeeecccceecCCCCeEEEEEcCCCCEEEEEeeCCeEEEEecCCC
Q 001567 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES 288 (1052)
Q Consensus 210 ~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i-~~w~~~~~~~~~gh~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~ 288 (1052)
.+..++|++..+.++++......++--+.++.+ +... +.|..+.=.+++.-++.++++--.++.+.+++++..
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~------l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP------LDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-------SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe------CCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence 377778877665555554444433333333322 1111 144455558888888877766556899999998553
Q ss_pred Ccee--EEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCC
Q 001567 289 ASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (1052)
Q Consensus 289 ~~~~--~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~ 338 (1052)
+..+ ......+.+....+...+-.++|.|.++.|.++-+..-..++.+.+
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 3322 2222223333333566789999999988888888877778887765
No 351
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.89 E-value=1 Score=56.14 Aligned_cols=69 Identities=19% Similarity=0.395 Sum_probs=51.9
Q ss_pred CCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCC---eeEEEECCCCCEEEEEEcCCcEE
Q 001567 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP---VSCIAWTPDNSAFAVGWKSRGLT 332 (1052)
Q Consensus 257 ~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~---V~~l~~SpDg~~Lasg~~Dg~v~ 332 (1052)
..+| |++||.+|++++.|-.+|.|.+||+.. ++.++.+.. |..+ |..+.|..++..+.++..-|.
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e--------~~ap~t~vi~v~~t~~nS~llt~D~~Gs-- 198 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITE--------HGAPVTGVIFVGRTSQNSKLLTSDTGGS-- 198 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccC-Ccceeeeee--------cCCccceEEEEEEeCCCcEEEEccCCCc--
Confidence 5678 999999999999999999999999987 777776665 3333 444556667776666655443
Q ss_pred EEEc
Q 001567 333 VWSV 336 (1052)
Q Consensus 333 vWd~ 336 (1052)
+|..
T Consensus 199 f~~l 202 (1206)
T KOG2079|consen 199 FWKL 202 (1206)
T ss_pred eEEE
Confidence 7765
No 352
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.66 E-value=0.17 Score=39.26 Aligned_cols=34 Identities=26% Similarity=0.547 Sum_probs=30.3
Q ss_pred CCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCe
Q 001567 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (1052)
Q Consensus 307 ~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~ 340 (1052)
...|.+++|+|....||.|..||.|.|+.+.+.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 4579999999999999999999999999996543
No 353
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.49 E-value=14 Score=40.49 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=45.7
Q ss_pred CCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCC
Q 001567 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1052)
Q Consensus 266 pd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~ 339 (1052)
..++.|++|+++| +.+|+++......+..+ ..+|..+..-|+-+.|++-++ +.+.++++..-
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----------~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l 66 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK----------LSSITQLSVLPELNLLLVLSD-GQLYVYDLDSL 66 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee----------cceEEEEEEecccCEEEEEcC-CccEEEEchhh
Confidence 4678899999999 89999844234333332 344999999998777776654 99999998654
No 354
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.37 E-value=1.9 Score=51.90 Aligned_cols=98 Identities=9% Similarity=-0.019 Sum_probs=56.6
Q ss_pred CCCCCEEEEEEcCCcEEEEEcCC-----CeEEEEecccccCceeeeeEcCCCCCCccceeeee----eeeEEecCCceE-
Q 001567 316 TPDNSAFAVGWKSRGLTVWSVSG-----CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRL- 385 (1052)
Q Consensus 316 SpDg~~Lasg~~Dg~v~vWd~~~-----~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l- 385 (1052)
.+||++...+ ++.|.|.|..+ ......+.-. .+...+.++||+ +.+.... ++-+.+....+-
T Consensus 285 vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDG----kylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 285 VKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDG----KYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred hhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECC--CCccceEECCCC----CEEEEeCCCCCcEEEEEChhhhhh
Confidence 4578876663 57899999987 4556655532 456678899998 5544332 566666655331
Q ss_pred -----------EEEecCCcccE-EEEec-cceeeeeccCCceeeeEeee
Q 001567 386 -----------YAIEEGSSERV-LIFSF-GKCCLNRGVSGMTYARQVIY 421 (1052)
Q Consensus 386 -----------~~~~~~~~~~v-~~~s~-~k~~~s~s~d~~v~~w~~~~ 421 (1052)
.....-....+ .+|+. +....|--.|..+-.|++..
T Consensus 357 ~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 357 FDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 11111112222 45554 55555566677777777643
No 355
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.15 E-value=0.052 Score=63.32 Aligned_cols=75 Identities=23% Similarity=0.430 Sum_probs=54.9
Q ss_pred CeE-EEEEcCC--CCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC-CCCEEEEEEc----CC
Q 001567 258 DAV-CASIAPE--QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWK----SR 329 (1052)
Q Consensus 258 ~~v-~va~spd--~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp-Dg~~Lasg~~----Dg 329 (1052)
..+ |++.+.+ ..++|+|..+|.|-+-.+.. .... .+.+.++|..+.++++|++ |...||.|-+ |.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~-~hdS------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRH-PHDS------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCC-cccc------cceecccccccccccccccccHHHHHhhhhhhcccC
Confidence 345 7776654 45899999999999988765 2111 1233445889999999999 7788888843 56
Q ss_pred cEEEEEcCCC
Q 001567 330 GLTVWSVSGC 339 (1052)
Q Consensus 330 ~v~vWd~~~~ 339 (1052)
.+.|||..++
T Consensus 130 ~~~Iwdi~s~ 139 (783)
T KOG1008|consen 130 SLKIWDINSL 139 (783)
T ss_pred Cccceecccc
Confidence 8999999776
No 356
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.00 E-value=0.18 Score=39.18 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=26.8
Q ss_pred ccceEEEcCCccEEEEEeCCcEEEEEEEE
Q 001567 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQ 97 (1052)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~dg~l~i~~l~ 97 (1052)
.+..++|+|....||+++.+|.|.+|++.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 46799999999999999999999999984
No 357
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.86 E-value=4.3 Score=49.73 Aligned_cols=107 Identities=13% Similarity=0.003 Sum_probs=59.2
Q ss_pred EEEEeeCCcEEEEEe------cCCceeeeeeccc---cee-cCCCCeEEEEEcCCCCEEEEEeeC-CeEEEEecCCCCce
Q 001567 223 LFVLYSNGQLMSCSV------SKKGLKLAEFIKI---DKE-LGSGDAVCASIAPEQQILAVGTRR-GVVELYDLAESASL 291 (1052)
Q Consensus 223 ~~~~s~dG~~~~~~~------~d~~i~~w~~~~~---~~~-~gh~~~v~va~spd~~~lAsgs~D-g~V~vwd~~~~~~~ 291 (1052)
..++++||+.++... .|..-.+|-...+ ..+ .+. .-.+-+|+|||+.|++.+.. ..+++.+-.. ...
T Consensus 354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~-~gq 431 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA-TGQ 431 (591)
T ss_pred cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC-CCCCceECCCCCceEEEecCcceEEEeccCC-Cce
Confidence 467889999777665 2444455643211 111 222 22277999999998887643 2233433222 122
Q ss_pred eEEEEeecCCCCC-CCCCCeeEEEECCCCCEEEEEEcCCcEEE
Q 001567 292 IRTVSLYDWGYSM-DDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (1052)
Q Consensus 292 ~~~l~~~~~~~~~-~h~g~V~~l~~SpDg~~Lasg~~Dg~v~v 333 (1052)
+..+... -+... ...+.|..++|||||..+|.... +.|.|
T Consensus 432 l~~~~vd-~ge~~~~~~g~Issl~wSpDG~RiA~i~~-g~v~V 472 (591)
T PRK13616 432 LARTPVD-ASAVASRVPGPISELQLSRDGVRAAMIIG-GKVYL 472 (591)
T ss_pred EEEEecc-CchhhhccCCCcCeEEECCCCCEEEEEEC-CEEEE
Confidence 2211110 00000 13678999999999999888663 55544
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=92.63 E-value=19 Score=41.86 Aligned_cols=107 Identities=16% Similarity=0.253 Sum_probs=70.9
Q ss_pred EEeeCCc-EEEEEecCCceeeeeeccccee----cCCCCeEEEEEcCCCCEEEEEee---CCeEEEEecCCCCceeEEEE
Q 001567 225 VLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE----LGSGDAVCASIAPEQQILAVGTR---RGVVELYDLAESASLIRTVS 296 (1052)
Q Consensus 225 ~~s~dG~-~~~~~~~d~~i~~w~~~~~~~~----~gh~~~v~va~spd~~~lAsgs~---Dg~V~vwd~~~~~~~~~~l~ 296 (1052)
+++++|. .+++...+..+.+.|....... .|. .+..++++|+++.+-++.. +++|.+.|-.+ .+.+.+..
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~~~~~~ 157 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKVTATIP 157 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeEEEEEe
Confidence 4456666 6666666677777764443322 232 4448999999977666554 67888888766 55555533
Q ss_pred eecCCCCCCCCCCeeEEEECCCCCEEEEEE-cCCcEEEEEcCCCeEE
Q 001567 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRLM 342 (1052)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~-~Dg~v~vWd~~~~~l~ 342 (1052)
. -..+ ..++++|+|+.+.+.. .++.+.+.|..+....
T Consensus 158 v--------G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 158 V--------GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred c--------CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 3 1234 8899999999666665 6789999997665444
No 359
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=92.32 E-value=0.16 Score=62.67 Aligned_cols=156 Identities=19% Similarity=0.170 Sum_probs=103.7
Q ss_pred cceecHHHHHHHHHHcccHHHHHHHHHHcCCCCCchHHHHHH-HHHhhccccccccccccccCCccccchhhhHHHHHHH
Q 001567 756 QAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWL-LFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNF 834 (1052)
Q Consensus 756 ~~~~~L~~il~~ll~~~~~~~a~~~a~~~~~l~~f~~~LE~l-Lh~vle~e~~~~~~~~~~~~i~~~~~~~~ll~~v~~f 834 (1052)
+++++|-++. |...+-+-|.|+.+-++.+.-....++.. +.. . +.+ .+-+.+..+|
T Consensus 795 ~~a~~L~q~a---L~~~kwdl~~Elirfl~~i~p~~~~~~~~~~~~-----~-----------~~~----~~s~d~~~~f 851 (1023)
T KOG2006|consen 795 QHALRLLQLA---LEEKKWDLAKELIRFLRSIGPEKIDLPTKLIAT-----P-----------TLR----SPSLDKSLEF 851 (1023)
T ss_pred HHHHHHHHHH---HHhhcchhHHHHHHHHHhcCcchhhccchhccC-----c-----------ccc----CccchhhhHH
Confidence 4555554443 33455566777777777776666666651 111 1 000 0233445555
Q ss_pred HHccc--------------hhHHHHhhhcccccccchHHhHhccC-ChHHHHHHHHhcCcHhHHhhhhhhhhhccCcch-
Q 001567 835 IRNFP--------------EYLNVVVSVARKTDGRHWADLFSAAG-RSTELFEECFQRRWYRTAACYILVIAKLEGPAV- 898 (1052)
Q Consensus 835 i~~~~--------------~~l~ivv~caRKtE~~~W~~lF~~~g-~P~~Lf~~cl~~~~l~~aa~yLiv~~~~e~~~~- 898 (1052)
++.|+ ..+++.-+|.||.+++.|+..|.... +|++..+.|++...-+.|...|..+.+|+.-..
T Consensus 852 ~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~i~~~l~~ha~~lL~~~~l~dlg~~~ 931 (1023)
T KOG2006|consen 852 IDQRNNVLSEHAILESVHSSMLSIQKNCKRKSGTKGWNHDKTNLKQTPRDRLALCIDEILARHARVLLLNFLLLDLGCFG 931 (1023)
T ss_pred HHhhccccccccccCCccchhhccccccccccCCCCcccchhhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44333 34788889999999999999999988 999999999999999999999999988774321
Q ss_pred -------------------------hHHHHH-------------HHHHH------HHhcccHhHHHHHHHHhhhcCcCcc
Q 001567 899 -------------------------SQYSAL-------------RLLQA------TLDECLYELAGELVRFLLRSGREYE 934 (1052)
Q Consensus 899 -------------------------~~~~~~-------------~Ll~~------al~~~~w~l~~eL~RFl~~~~~~~~ 934 (1052)
+..+++ ++++. .-+.+.|.+|.+.+|-++.++.+|.
T Consensus 932 ~~l~f~l~~~l~~er~~~~~~~~~~~~~~~l~~~~~l~l~~~~a~~~~~~~~~g~~r~~~~~~~~sqs~~~~~~l~~~~~ 1011 (1023)
T KOG2006|consen 932 ADLHFKLVSLLTEERKRAADNDTFKSELSVLHEDFDLELPLKVAQLLDTSQINGPIRATGGWGSCSQSIRLLKELDRDNG 1011 (1023)
T ss_pred hhcceeehhhhHHHHHHHhcCchhhhHHHHHHHhhccccchhhHhhcchHhhccchhhccCCcchhHHHHHHHhhccccc
Confidence 111111 11111 1233889999999999999998765
No 360
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=92.21 E-value=1.1 Score=52.59 Aligned_cols=110 Identities=13% Similarity=0.234 Sum_probs=59.3
Q ss_pred EEEEeeCCcEEEEEe--cC--Cceeeeeeccccee--cCCCCeE-EEEEcCCCCEEEEE-eeCCeEEEEecCCCCceeEE
Q 001567 223 LFVLYSNGQLMSCSV--SK--KGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVG-TRRGVVELYDLAESASLIRT 294 (1052)
Q Consensus 223 ~~~~s~dG~~~~~~~--~d--~~i~~w~~~~~~~~--~gh~~~v-~va~spd~~~lAsg-s~Dg~V~vwd~~~~~~~~~~ 294 (1052)
.-.+++||+.++... .. ..+.+++...++.. ..-.... .-+|+|||+.||.. ..||...||-++..++....
T Consensus 197 ~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~ 276 (425)
T COG0823 197 TPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR 276 (425)
T ss_pred ccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee
Confidence 344567776544332 11 22445555544321 1111222 56899999988754 45676666655443443443
Q ss_pred EEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC-Cc--EEEEEcCCCe
Q 001567 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RG--LTVWSVSGCR 340 (1052)
Q Consensus 295 l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D-g~--v~vWd~~~~~ 340 (1052)
+.. -.|.-..=.|||||+.++-.++. |. |.+.+..++.
T Consensus 277 Lt~--------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 277 LTN--------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred ccc--------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 332 22333356899999988776654 43 4444555554
No 361
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.15 E-value=6.7 Score=48.14 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=53.5
Q ss_pred CeE-EEEEcCCCCEEEEEe------eCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC-C
Q 001567 258 DAV-CASIAPEQQILAVGT------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-R 329 (1052)
Q Consensus 258 ~~v-~va~spd~~~lAsgs------~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D-g 329 (1052)
..+ ..++||+|+.+|.-. .|+.-.||-....+.......+ . ..+.-+|+|||..+++..+. .
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--------~--~~t~PsWspDG~~lw~v~dg~~ 419 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--------H--SLTRPSWSLDADAVWVVVDGNT 419 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--------C--CCCCceECCCCCceEEEecCcc
Confidence 345 889999999988766 2544455544332333222222 1 36778999999988887543 1
Q ss_pred cEEEE-----------EcCCCeEEEEecccccCceeeeeEcCCC
Q 001567 330 GLTVW-----------SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (1052)
Q Consensus 330 ~v~vW-----------d~~~~~l~~tl~~~~~~~v~s~~~sp~~ 362 (1052)
.+++. ++.++.... .. ...|+++++||||
T Consensus 420 ~~~v~~~~~~gql~~~~vd~ge~~~---~~-~g~Issl~wSpDG 459 (591)
T PRK13616 420 VVRVIRDPATGQLARTPVDASAVAS---RV-PGPISELQLSRDG 459 (591)
T ss_pred eEEEeccCCCceEEEEeccCchhhh---cc-CCCcCeEEECCCC
Confidence 22222 333332221 11 3468899999998
No 362
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.82 E-value=20 Score=38.17 Aligned_cols=83 Identities=12% Similarity=0.128 Sum_probs=59.6
Q ss_pred CCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeE-EEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEe
Q 001567 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC-IAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (1052)
Q Consensus 267 d~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~-l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl 345 (1052)
-|.+++.|+..|.+.+-+..+ ++....+.. .+.|.+ -...+||..+-.|+.|++...-|..+..++...
T Consensus 62 vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~---------~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVI---------LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred ECCEEEEEEccCcEEEEEecc-hhheeeeee---------hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 466799999999999999988 765555543 223332 234678999999999999999999988877776
Q ss_pred cccccCceeeeeEcC
Q 001567 346 RQISLSSISSPIVKP 360 (1052)
Q Consensus 346 ~~~~~~~v~s~~~sp 360 (1052)
+-.| ....++++.|
T Consensus 132 kcgG-~~f~sP~i~~ 145 (354)
T KOG4649|consen 132 KCGG-GTFVSPVIAP 145 (354)
T ss_pred ccCC-ceeccceecC
Confidence 6442 2334445544
No 363
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=4 Score=45.75 Aligned_cols=45 Identities=9% Similarity=0.137 Sum_probs=37.6
Q ss_pred CCCCCCeeEEEECCCCC-EEEEEEcCCcEEEEEcCCCeEEEEeccc
Q 001567 304 MDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQI 348 (1052)
Q Consensus 304 ~~h~g~V~~l~~SpDg~-~Lasg~~Dg~v~vWd~~~~~l~~tl~~~ 348 (1052)
++|...|..++|||..+ ++..++.+.+|+|.|+.+...+.+...+
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~ 235 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY 235 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc
Confidence 34788899999999887 7888999999999999998776665544
No 364
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.39 E-value=19 Score=39.18 Aligned_cols=95 Identities=19% Similarity=0.256 Sum_probs=56.4
Q ss_pred CeEEEEEcCCCCEEEEEe-eCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE-
Q 001567 258 DAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS- 335 (1052)
Q Consensus 258 ~~v~va~spd~~~lAsgs-~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd- 335 (1052)
+....++|++++.+|.-. .++.-.||-....+.....+.+ ..+..-+|+++|...++...+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g----------~~l~~PS~d~~g~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG----------GSLTRPSWDPDGWVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC----------CccccccccCCCCEEEEEcCCCceEEEEe
Confidence 344899999999887765 2333344444432222222222 3677789999999888888777777774
Q ss_pred cCCC-eEEEEecccccC-ceeeeeEcCCC
Q 001567 336 VSGC-RLMSTIRQISLS-SISSPIVKPNQ 362 (1052)
Q Consensus 336 ~~~~-~l~~tl~~~~~~-~v~s~~~sp~~ 362 (1052)
...+ .....+...... .|+++++||+|
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG 123 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRITALRVSPDG 123 (253)
T ss_pred cCCCcceeEEecccccCCceEEEEECCCC
Confidence 2222 212222221122 67888888887
No 365
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=91.05 E-value=26 Score=37.95 Aligned_cols=210 Identities=13% Similarity=0.103 Sum_probs=95.4
Q ss_pred eEEEEeeCCe-EEEEEc-CCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecC
Q 001567 23 QIIYFKVNNG-LLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (1052)
Q Consensus 23 ~vv~fSpdg~-llA~~s-d~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~ 100 (1052)
.-++++||+. ++|+.. +..|...+. .+..+.... +...|..-.|++.-+++++++.-.++.|.++++....
T Consensus 25 SGLTy~pd~~tLfaV~d~~~~i~els~--~G~vlr~i~-----l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEPGEIYELSL--DGKVLRRIP-----LDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEET--T--EEEEEE------SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred cccEEcCCCCeEEEEECCCCEEEEEcC--CCCEEEEEe-----CCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 4589999855 555554 344544454 343343332 3346777899999888777766568899999986433
Q ss_pred ceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccce
Q 001567 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (1052)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~ 180 (1052)
..... ..+..+.+..... .....--.|..+.++.++++-...-..++.+++.... ..+ .+.
T Consensus 98 ~~~~~-------~~~~~~~l~~~~~---~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~-~~~--------~~~ 158 (248)
T PF06977_consen 98 TSLDR-------ADVQKISLGFPNK---GNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG-FDL--------FVS 158 (248)
T ss_dssp TT--E-------EEEEEEE---S------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S-S----------EEE
T ss_pred cccch-------hhceEEecccccC---CCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc-cce--------eec
Confidence 21100 0011111111100 0111112244455677887766655556666642210 000 000
Q ss_pred eecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCce-eeeeecccce--ecCCC
Q 001567 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL-KLAEFIKIDK--ELGSG 257 (1052)
Q Consensus 181 ~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i-~~w~~~~~~~--~~gh~ 257 (1052)
.... +. + .......+..+.|++..+.+..+|..++.++.-..++.+ ..+....+.. .....
T Consensus 159 ~~~~-----~~---~--------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~ 222 (248)
T PF06977_consen 159 DDQD-----LD---D--------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIP 222 (248)
T ss_dssp E-HH-----HH------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---
T ss_pred cccc-----cc---c--------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccC
Confidence 0000 00 0 001112255677888888888888888887766666654 3344333210 01122
Q ss_pred CeEEEEEcCCCCEEEEE
Q 001567 258 DAVCASIAPEQQILAVG 274 (1052)
Q Consensus 258 ~~v~va~spd~~~lAsg 274 (1052)
.+-.++|.++|++.++.
T Consensus 223 QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 223 QPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp SEEEEEE-TT--EEEEE
T ss_pred CccEEEECCCCCEEEEc
Confidence 34489999999877764
No 366
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=90.95 E-value=7.8 Score=36.04 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=46.5
Q ss_pred EEcCCC-CEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcC
Q 001567 263 SIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (1052)
Q Consensus 263 a~spd~-~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~ 337 (1052)
.|.-|| .-|.+||.|..||+|+-+ ..+..+.. ++.|++++-... ..++-|-.+|+|-+++-.
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e---------~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE---------TDKVTSLCSLGG-GRFAYALANGTVGVYDRS 71 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec---------ccceEEEEEcCC-CEEEEEecCCEEEEEeCc
Confidence 344454 469999999999999853 45555554 677888887766 568899999999998763
No 367
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.70 E-value=58 Score=41.42 Aligned_cols=75 Identities=13% Similarity=0.220 Sum_probs=48.4
Q ss_pred CCceEEEEeeCCeEEEEE-cCCcEEEeecCCceeEEEEEe-cChhhhhhcCccceEEEcCCc------cEEEEEeCCcEE
Q 001567 20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYK-RDSESVQREGENLQAVWSPDT------KLIAVVTSSLYL 91 (1052)
Q Consensus 20 ~~~~vv~fSpdg~llA~~-sd~~v~IW~~~~~~~~l~~~~-r~~~sl~~~G~~~~v~wSPDg------~~Lav~t~dg~l 91 (1052)
....|+..-.+...++++ +.+.+.-.-.. ...++..+. |. . -...+.|+++.||. +.+|+++.|+.+
T Consensus 538 ~~~~Iv~~avnr~qiVvalSngelvyfe~d-~sgql~E~~er~--t--l~~~vac~ai~~~~~g~krsrfla~a~~d~~v 612 (1205)
T KOG1898|consen 538 ERVRIVKCAVNRRQIVVALSNGELVYFEGD-VSGQLNEFTERV--T--LSTDVACLAIGQDPEGEKRSRFLALASVDNMV 612 (1205)
T ss_pred CceEEEEEeecceEEEEEccCCeEEEEEec-cCccceeeeeee--e--eceeehhhccCCCCcchhhcceeeeeccccce
Confidence 445666555555555555 55555444443 445555553 21 1 13566789999887 569999999999
Q ss_pred EEEEEEec
Q 001567 92 HIFKVQIT 99 (1052)
Q Consensus 92 ~i~~l~~~ 99 (1052)
+++.+...
T Consensus 613 riisL~p~ 620 (1205)
T KOG1898|consen 613 RIISLDPS 620 (1205)
T ss_pred eEEEecCc
Confidence 99999743
No 368
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=89.41 E-value=1.1 Score=46.61 Aligned_cols=100 Identities=10% Similarity=0.170 Sum_probs=60.7
Q ss_pred CcEEEEEecCCceeeeeeccc----ceecCCCCeE-EE-EEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCC
Q 001567 230 GQLMSCSVSKKGLKLAEFIKI----DKELGSGDAV-CA-SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (1052)
Q Consensus 230 G~~~~~~~~d~~i~~w~~~~~----~~~~gh~~~v-~v-a~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~ 303 (1052)
++-+++++.++.+.+|..... .....-...+ |. ..-.++.+..+|+.||.||.|++.. .+.+.....
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~------ 142 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQ------ 142 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc-Cceeeeecc------
Confidence 456777778887777655411 0011112333 32 3334566889999999999999976 554443333
Q ss_pred CCCC-CCeeEEEECCCCCEEEEE--EcCCcEEEEEcCC
Q 001567 304 MDDT-GPVSCIAWTPDNSAFAVG--WKSRGLTVWSVSG 338 (1052)
Q Consensus 304 ~~h~-g~V~~l~~SpDg~~Lasg--~~Dg~v~vWd~~~ 338 (1052)
|+ .++.....+..++.++.+ |.|..++.|++..
T Consensus 143 --h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 143 --HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred --ccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 66 455555555566666666 6666777777643
No 369
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=89.40 E-value=6.5 Score=45.72 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=50.1
Q ss_pred CCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC-----CC---CEEEEEEc
Q 001567 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-----DN---SAFAVGWK 327 (1052)
Q Consensus 257 ~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp-----Dg---~~Lasg~~ 327 (1052)
.+.| +++.| |=.++|+|.++|.+.|.|++. ...+..-...+..........|+++.|+. |+ -+|.+|..
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RG-PavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRG-PAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTT-TEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCC-CeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 5677 77765 667999999999999999975 55555433322111222455789999983 44 37788888
Q ss_pred CCcEEEEEc
Q 001567 328 SRGLTVWSV 336 (1052)
Q Consensus 328 Dg~v~vWd~ 336 (1052)
.|.+.+|.+
T Consensus 164 ~G~v~~fkI 172 (395)
T PF08596_consen 164 SGNVLTFKI 172 (395)
T ss_dssp TSEEEEEEE
T ss_pred CCCEEEEEE
Confidence 888888765
No 370
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=89.32 E-value=57 Score=39.27 Aligned_cols=71 Identities=15% Similarity=0.169 Sum_probs=40.9
Q ss_pred CEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC--CCCEEEEEE---------cCCcEEEEEcC
Q 001567 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGW---------KSRGLTVWSVS 337 (1052)
Q Consensus 269 ~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp--Dg~~Lasg~---------~Dg~v~vWd~~ 337 (1052)
..+.+++.||.|.-+|.++ ++.+-...... +...-..+.-+| .+..+++++ .++.+...|..
T Consensus 111 ~~V~v~~~~g~v~AlD~~T-G~~~W~~~~~~------~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~ 183 (488)
T cd00216 111 RKVFFGTFDGRLVALDAET-GKQVWKFGNND------QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVE 183 (488)
T ss_pred CeEEEecCCCeEEEEECCC-CCEeeeecCCC------CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECC
Confidence 5777888999999999987 76554443311 100000111122 123444443 35778888888
Q ss_pred CCeEEEEec
Q 001567 338 GCRLMSTIR 346 (1052)
Q Consensus 338 ~~~l~~tl~ 346 (1052)
+++......
T Consensus 184 TG~~~W~~~ 192 (488)
T cd00216 184 TGKLLWRFY 192 (488)
T ss_pred CCceeeEee
Confidence 887766554
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=89.27 E-value=3.5 Score=51.55 Aligned_cols=93 Identities=18% Similarity=0.181 Sum_probs=61.6
Q ss_pred EEEEEecCCceeeeeecccc-ee---cCC----CCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeE-EEEeecCC
Q 001567 232 LMSCSVSKKGLKLAEFIKID-KE---LGS----GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIR-TVSLYDWG 301 (1052)
Q Consensus 232 ~~~~~~~d~~i~~w~~~~~~-~~---~gh----~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~-~l~~~~~~ 301 (1052)
..++|.++..+..||..-.. +. ..| .... |++-+.+| .||+|+.+|.||+||- . +..-. .+.
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~-g~~AKT~lp----- 615 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-L-GKRAKTALP----- 615 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-c-chhhhhcCC-----
Confidence 45667777777778776432 11 111 1223 77766666 7999999999999993 2 32111 122
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 001567 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1052)
Q Consensus 302 ~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~ 336 (1052)
+-..||..|..|.||++++..+. ..+.+.++
T Consensus 616 ---~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 616 ---GLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred ---CCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 24579999999999998887776 46666665
No 372
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=87.89 E-value=68 Score=38.40 Aligned_cols=111 Identities=16% Similarity=0.263 Sum_probs=69.0
Q ss_pred EEEeeCC-----eEEEEEcCCcEEEeecCCce-----eEEEEE---ecChhhhhhcCccceEEEcCCccEEEEEeCCcEE
Q 001567 25 IYFKVNN-----GLLLIASPCHIELWSSSQHK-----VRLGKY---KRDSESVQREGENLQAVWSPDTKLIAVVTSSLYL 91 (1052)
Q Consensus 25 v~fSpdg-----~llA~~sd~~v~IW~~~~~~-----~~l~~~---~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l 91 (1052)
++.+|-+ .|||+-....|.||-.- +. ..+... .|.+-.+-- ....|.|....|+|-|+...-
T Consensus 62 lsW~P~~~~~~paLLAVQHkkhVtVWqL~-~s~~e~~K~l~sQtcEi~e~~pvLp----QGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 62 LSWAPPCTADTPALLAVQHKKHVTVWQLC-PSTTERNKLLMSQTCEIREPFPVLP----QGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred eeecCcccCCCCceEEEeccceEEEEEec-cCccccccceeeeeeeccCCcccCC----CcccccCCCceEEEEecCcee
Confidence 5555542 48888899999999873 32 111111 111111111 256799999999999999887
Q ss_pred EEEEEEecCceeecCCCCCCCceeeeEeeeeccccccccccceE--EEEeecCCeEEEEecCCcEEEEeccCcc
Q 001567 92 HIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDGSLYSISWKGEF 163 (1052)
Q Consensus 92 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~i~~d~~~llv~t~dg~v~~~~wd~~~ 163 (1052)
.++++..+..+... . ++ ..+.| .|...||.+++++-.+ .++-+-||...
T Consensus 137 V~~sV~~d~srVka---------------D------i~-~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVHCDSSRVKA---------------D------IK-TSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSAQ 187 (671)
T ss_pred EeeeeeeCCceEEE---------------e------cc-CCceEEEEEecCcCCEEEEEeCC-eEEEEEecCch
Confidence 88998866532211 1 11 11223 3566789999988766 67778898654
No 373
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.68 E-value=63 Score=37.79 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=25.0
Q ss_pred eeEEEECCCCCEEEEEE-cCC----cEEEEEcCCCeEE
Q 001567 310 VSCIAWTPDNSAFAVGW-KSR----GLTVWSVSGCRLM 342 (1052)
Q Consensus 310 V~~l~~SpDg~~Lasg~-~Dg----~v~vWd~~~~~l~ 342 (1052)
+...++||||+++|.+- ..| .+++.|+.+++.+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l 163 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL 163 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc
Confidence 34678999999998763 333 5999999988654
No 374
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.02 E-value=2.1 Score=43.63 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=47.7
Q ss_pred ceEEEEeeCCeEEEEEcCCcEEEeecCCce-------------------eEEEEEecChh-----------hh----hhc
Q 001567 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHK-------------------VRLGKYKRDSE-----------SV----QRE 67 (1052)
Q Consensus 22 ~~vv~fSpdg~llA~~sd~~v~IW~~~~~~-------------------~~l~~~~r~~~-----------sl----~~~ 67 (1052)
-..++.|.|| .||++++..|.|-+...|. .++..+.+... +. ...
T Consensus 7 ~~~l~WS~Dg-~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~ 85 (173)
T PF12657_consen 7 PNALAWSEDG-QLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISS 85 (173)
T ss_pred CcCeeECCCC-CEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccccc
Confidence 3567899999 6777888889998332121 01111111111 00 011
Q ss_pred CccceEEEcCCc------cEEEEEeCCcEEEEEEEE
Q 001567 68 GENLQAVWSPDT------KLIAVVTSSLYLHIFKVQ 97 (1052)
Q Consensus 68 G~~~~v~wSPDg------~~Lav~t~dg~l~i~~l~ 97 (1052)
+.+.+++|||-| -.||+.|++|.|.||.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 367899999965 479999999999999865
No 375
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=86.66 E-value=38 Score=43.15 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=48.8
Q ss_pred CeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEE-----------EeecCCCCCCCCCCeeEEEECCCCCEEEEE
Q 001567 258 DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTV-----------SLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (1052)
Q Consensus 258 ~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l-----------~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg 325 (1052)
+.| ++....-+..++....||+|.++|-.+ -+.+... +..+.++...+-.++..++|||.+..++.-
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t-~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNT-MKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCc-chhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 344 676666777899999999999999765 3222111 111112221233356679999999999998
Q ss_pred EcCCcEE
Q 001567 326 WKSRGLT 332 (1052)
Q Consensus 326 ~~Dg~v~ 332 (1052)
..||.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888766
No 376
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.60 E-value=1.4 Score=55.02 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=50.8
Q ss_pred eEEEEeeCCeEEEEEcCCcEEEeecCCceeE-----------EEEEecChhhh---hhcCccceEEEcCCc---cEEEEE
Q 001567 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVR-----------LGKYKRDSESV---QREGENLQAVWSPDT---KLIAVV 85 (1052)
Q Consensus 23 ~vv~fSpdg~llA~~sd~~v~IW~~~~~~~~-----------l~~~~r~~~sl---~~~G~~~~v~wSPDg---~~Lav~ 85 (1052)
.-|.+||+|+++|.++...|.|-...+...+ .+....-...+ .....+..+.|.|.| ..|++-
T Consensus 88 ~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vL 167 (717)
T PF10168_consen 88 HQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVL 167 (717)
T ss_pred EEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEE
Confidence 3366899999999999988888776422111 11111111111 112356789999975 899999
Q ss_pred eCCcEEEEEEEE
Q 001567 86 TSSLYLHIFKVQ 97 (1052)
Q Consensus 86 t~dg~l~i~~l~ 97 (1052)
|+|+++|+||+.
T Consensus 168 tsdn~lR~y~~~ 179 (717)
T PF10168_consen 168 TSDNTLRLYDIS 179 (717)
T ss_pred ecCCEEEEEecC
Confidence 999999999996
No 377
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=85.78 E-value=67 Score=36.16 Aligned_cols=67 Identities=15% Similarity=0.251 Sum_probs=37.1
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEecCCC------Cc-eeEEEEeecCCCCCCC-CCCeeEE---EECCC--CC------E
Q 001567 261 CASIAPEQQILAVGTRRGVVELYDLAES------AS-LIRTVSLYDWGYSMDD-TGPVSCI---AWTPD--NS------A 321 (1052)
Q Consensus 261 ~va~spd~~~lAsgs~Dg~V~vwd~~~~------~~-~~~~l~~~~~~~~~~h-~g~V~~l---~~SpD--g~------~ 321 (1052)
++.+-++++.++++..+|.+.++..... +. .+...... | ...|+++ +..|. +. .
T Consensus 177 ~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f-------~lg~~v~~~~~~~l~~~~~~~~~~~~~~ 249 (321)
T PF03178_consen 177 AAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF-------HLGDIVNSFRRGSLIPRSGSSESPNRPQ 249 (321)
T ss_dssp EEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE-------E-SS-EEEEEE--SS--SSSS-TTEEEE
T ss_pred EEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEE-------ECCCccceEEEEEeeecCCCCcccccce
Confidence 7777766679999999999999988631 11 22222211 3 3457777 55552 22 3
Q ss_pred EEEEEcCCcEEEE
Q 001567 322 FAVGWKSRGLTVW 334 (1052)
Q Consensus 322 Lasg~~Dg~v~vW 334 (1052)
+.-++.+|+|-+-
T Consensus 250 i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 250 ILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEETTS-EEEE
T ss_pred EEEEecCCEEEEE
Confidence 6667777877633
No 378
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=85.69 E-value=1.1e+02 Score=38.75 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=51.6
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCe
Q 001567 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (1052)
Q Consensus 261 ~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~ 340 (1052)
-..|--|..+|.++..||.+.-|.++.........+.... -+.|+.-=.|+..++.-+-+..|+-.-++.-.+..
T Consensus 588 ~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~l-----Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kL 662 (1096)
T KOG1897|consen 588 LTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTL-----GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKL 662 (1096)
T ss_pred eEEeeccceEEEEEcCCceEEEEEEEcccceEcccccccc-----CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcE
Confidence 4456666889999999999988877653332222221111 35677777888766544444556788889887766
Q ss_pred EEEEe
Q 001567 341 LMSTI 345 (1052)
Q Consensus 341 l~~tl 345 (1052)
++..+
T Consensus 663 v~spl 667 (1096)
T KOG1897|consen 663 VYSPL 667 (1096)
T ss_pred EEecc
Confidence 55444
No 379
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.55 E-value=15 Score=46.61 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=52.5
Q ss_pred EEEEcCCCCE-EEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCC
Q 001567 261 CASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (1052)
Q Consensus 261 ~va~spd~~~-lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~ 338 (1052)
|+.|||.-.. .|+...|+.|+|..+.........+. -+..++|++|||-|+.++.|-..|++.=+-...
T Consensus 160 ~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p---------~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 160 KNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP---------VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred cccccCCccchhhhhccccchhhhhhhhhhhhhcccC---------cccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 8999998654 67788999999988764222222222 366789999999999999999999988776654
No 380
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.11 E-value=64 Score=34.57 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=33.7
Q ss_pred EEeeCCcEEEEEecCCceeeeeeccccee--cCCCCeE--EEEEcC-CCCEEEEEeeCCeEEEEec
Q 001567 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV--CASIAP-EQQILAVGTRRGVVELYDL 285 (1052)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~gh~~~v--~va~sp-d~~~lAsgs~Dg~V~vwd~ 285 (1052)
...+||.++.+++.|++....|..+..+. ....+.+ +=+++| ++.+.|+ ...|.|.--+.
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a-~t~G~vlavt~ 164 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA-ITAGAVLAVTK 164 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE-eccceEEEEcc
Confidence 34578888888888888877776654332 1222333 445666 4544443 44454433333
No 381
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=83.36 E-value=74 Score=34.70 Aligned_cols=62 Identities=13% Similarity=0.110 Sum_probs=40.4
Q ss_pred eCCeEEEEEcCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEec
Q 001567 29 VNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1052)
Q Consensus 29 pdg~llA~~sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~ 99 (1052)
..++.|++++++.|.+++...+..+.... +...+..+..-|+-..+++-+ ||+|.+|++..-
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~--------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l 66 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRIL--------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSL 66 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEe--------ecceEEEEEEecccCEEEEEc-CCccEEEEchhh
Confidence 45667777787779888883232222211 112367888888877777665 599999999743
No 382
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=82.97 E-value=0.68 Score=54.48 Aligned_cols=141 Identities=17% Similarity=0.253 Sum_probs=82.9
Q ss_pred eEEEEeeCCcEEEEEecCCceeeeeecccceecCCCCeE-EEEEcC-CCCEEEEEe----eCCeEEEEecCCCC-ceeEE
Q 001567 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAP-EQQILAVGT----RRGVVELYDLAESA-SLIRT 294 (1052)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~gh~~~v-~va~sp-d~~~lAsgs----~Dg~V~vwd~~~~~-~~~~~ 294 (1052)
..++...+|++.++...+..-.-|. ..++|.... |++|++ |...||.|- .|..+.|||+...- .+...
T Consensus 72 IlavG~atG~I~l~s~r~~hdSs~E-----~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~ 146 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHDSSAE-----VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES 146 (783)
T ss_pred hhhhccccCceEEeecCCcccccce-----ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccc
Confidence 3344566677666544332111121 225666777 999998 677888874 46789999997611 11111
Q ss_pred EEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeE-EEEecccccCceeeeeEcC-CCCCCccceeee
Q 001567 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL-MSTIRQISLSSISSPIVKP-NQDCKYEPLMSG 372 (1052)
Q Consensus 295 l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l-~~tl~~~~~~~v~s~~~sp-~~~~~~~~l~sg 372 (1052)
. .+..+--..+.+++|-.|-+.+.+|...+.+.++|+..... ...+. +..+..+.++| .. .++++.
T Consensus 147 ~-----~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~~----nY~cs~ 214 (783)
T KOG1008|consen 147 P-----LFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFSP----NYFCSN 214 (783)
T ss_pred c-----ccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCCC----Cceecc
Confidence 1 11111234567899999999999999989999999863221 11111 22344555555 22 455544
Q ss_pred e--eeeEEe
Q 001567 373 T--SMMQWD 379 (1052)
Q Consensus 373 ~--~~~~W~ 379 (1052)
. .+.+||
T Consensus 215 ~dg~iAiwD 223 (783)
T KOG1008|consen 215 SDGDIAIWD 223 (783)
T ss_pred ccCceeecc
Confidence 4 677898
No 383
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.59 E-value=36 Score=41.68 Aligned_cols=52 Identities=13% Similarity=0.359 Sum_probs=37.5
Q ss_pred CeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCe
Q 001567 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (1052)
Q Consensus 278 g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~ 340 (1052)
-.|+||++. |..+.++.. ..+.+-.+.||.|-. |.+-..||++.|++..|..
T Consensus 64 ~~I~If~~s--G~lL~~~~w--------~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 64 PYIRIFNIS--GQLLGRILW--------KHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred eeEEEEecc--ccchHHHHh--------cCCCeeeecccCCce-EEEEeccceEEEeecchhh
Confidence 458888875 565554443 345889999997755 5556788999999997753
No 384
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=81.46 E-value=13 Score=40.35 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=39.8
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEec-CCCCcee-EEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 001567 261 CASIAPEQQILAVGTRRGVVELYDL-AESASLI-RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1052)
Q Consensus 261 ~va~spd~~~lAsgs~Dg~V~vwd~-~~~~~~~-~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~ 327 (1052)
.-+|++++.+.++...+...+++.. .. +... ..+.. + .-.+.|.++++||||..+|.-..
T Consensus 70 ~PS~d~~g~~W~v~~~~~~~~~~~~~~~-g~~~~~~v~~---~---~~~~~I~~l~vSpDG~RvA~v~~ 131 (253)
T PF10647_consen 70 RPSWDPDGWVWTVDDGSGGVRVVRDSAS-GTGEPVEVDW---P---GLRGRITALRVSPDGTRVAVVVE 131 (253)
T ss_pred cccccCCCCEEEEEcCCCceEEEEecCC-CcceeEEecc---c---ccCCceEEEEECCCCcEEEEEEe
Confidence 6789999888888787777777742 22 2211 11221 1 01228999999999998888763
No 385
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=81.28 E-value=75 Score=35.78 Aligned_cols=177 Identities=14% Similarity=0.081 Sum_probs=94.6
Q ss_pred CeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCC----CCEEEEEEc----------CCcEEEEEcCCC----
Q 001567 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD----NSAFAVGWK----------SRGLTVWSVSGC---- 339 (1052)
Q Consensus 278 g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpD----g~~Lasg~~----------Dg~v~vWd~~~~---- 339 (1052)
+.|++.|-.+ ...+.++...+. ++.-.+..+.+..+ -.++++|.. .|.+.++++...
T Consensus 2 s~i~l~d~~~-~~~~~~~~l~~~----E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~ 76 (321)
T PF03178_consen 2 SSIRLVDPTT-FEVLDSFELEPN----EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN 76 (321)
T ss_dssp -EEEEEETTT-SSEEEEEEEETT----EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----
T ss_pred cEEEEEeCCC-CeEEEEEECCCC----ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccc
Confidence 4678888766 555555554210 02222334445543 358887753 278999999873
Q ss_pred -eEEEEecccccCceeeeeEcCCCCCCccceee-eeeeeEEecCCce-EEEEecC-CcccEEEEec-cceeeeeccCCce
Q 001567 340 -RLMSTIRQISLSSISSPIVKPNQDCKYEPLMS-GTSMMQWDEYGYR-LYAIEEG-SSERVLIFSF-GKCCLNRGVSGMT 414 (1052)
Q Consensus 340 -~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~s-g~~~~~W~~~~~~-l~~~~~~-~~~~v~~~s~-~k~~~s~s~d~~v 414 (1052)
++.........+.|++++.- .+ ..+++ |..+.+|+.+..+ +.....- ....+..+.. +..++.|..-.++
T Consensus 77 ~~l~~i~~~~~~g~V~ai~~~-~~----~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv 151 (321)
T PF03178_consen 77 FKLKLIHSTEVKGPVTAICSF-NG----RLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSV 151 (321)
T ss_dssp -EEEEEEEEEESS-EEEEEEE-TT----EEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSE
T ss_pred eEEEEEEEEeecCcceEhhhh-CC----EEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCE
Confidence 22211111114567777654 22 33332 2388888877766 5544322 1224455554 6666666666666
Q ss_pred eeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEcc
Q 001567 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (1052)
Q Consensus 415 ~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~ 481 (1052)
.+..+.....++..... ....-.+.++.|-+|++.++++..+|.+ ++...
T Consensus 152 ~~~~~~~~~~~l~~va~-----------------d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEENNKLILVAR-----------------DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTTE-EEEEEE-----------------ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEccCCEEEEEEe-----------------cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 65543332222221111 1112347788887777899999999999 88764
No 386
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.23 E-value=1.1e+02 Score=35.35 Aligned_cols=71 Identities=14% Similarity=0.286 Sum_probs=47.4
Q ss_pred CCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCC-c--eeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 001567 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESA-S--LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1052)
Q Consensus 257 ~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~-~--~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~ 332 (1052)
.+++ ++.||+|.+.||+--.|.+|.+++...+. . ..++-+. .+..|....|+.+ +-+|--.. .++-
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~--------k~~~IlGF~W~~s-~e~A~i~~-~G~e 135 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT--------KNANILGFCWTSS-TEIAFITD-QGIE 135 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc--------CcceeEEEEEecC-eeEEEEec-CCeE
Confidence 4588 99999999999999999999999984311 1 1122222 3455788889865 44544443 4565
Q ss_pred EEEcC
Q 001567 333 VWSVS 337 (1052)
Q Consensus 333 vWd~~ 337 (1052)
++.+.
T Consensus 136 ~y~v~ 140 (657)
T KOG2377|consen 136 FYQVL 140 (657)
T ss_pred EEEEc
Confidence 66543
No 387
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.92 E-value=93 Score=34.18 Aligned_cols=176 Identities=14% Similarity=0.188 Sum_probs=97.1
Q ss_pred ccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeecccceecCCCCeEEEEEcCCCCEEEEEeeCCeEEEEecCCC
Q 001567 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES 288 (1052)
Q Consensus 209 ~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~gh~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~ 288 (1052)
..+.++.|+|..+...++...+..++--...|.+- ..-.+.+-.++-.+.+--++++.++--.++++.++.++..
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdli-----rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLI-----RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceE-----EEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 33667777666555555544444443322222210 1111245556667888888998888888999999998773
Q ss_pred CceeEEEE-eecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCcc
Q 001567 289 ASLIRTVS-LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE 367 (1052)
Q Consensus 289 ~~~~~~l~-~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~ 367 (1052)
+..+..-. ...++.......+--.++|.|..+.|..+=+.+=+.|+.+.+.. ..+..| .+.+-....+
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~--~~l~~~---------~~~~~~~~~~ 229 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP--SSLSVH---------ASLDPTADRD 229 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC--cccccc---------cccCcccccc
Confidence 33332111 11122111124556789999999999999888888888876432 111111 0001001123
Q ss_pred ceeeeeeeeEEecCCceEEEEecCCcccEEEEec
Q 001567 368 PLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF 401 (1052)
Q Consensus 368 ~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s~ 401 (1052)
..+...+...++..++.+++.... +..++.++.
T Consensus 230 ~f~~DvSgl~~~~~~~~LLVLS~E-Sr~l~Evd~ 262 (316)
T COG3204 230 LFVLDVSGLEFNAITNSLLVLSDE-SRRLLEVDL 262 (316)
T ss_pred eEeeccccceecCCCCcEEEEecC-CceEEEEec
Confidence 445445666777777777666432 233444443
No 388
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=79.81 E-value=5.2 Score=41.82 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=48.8
Q ss_pred CCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCee-EEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEec
Q 001567 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1052)
Q Consensus 268 ~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~-~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~ 346 (1052)
+.-+++|+.||.|.+|.....+........ -...|- -+.-.-++.+..++..||.++-|++.-++.+....
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s--------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS--------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhc--------ccccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence 456899999999999998753332221111 112222 23333466788899999999999998877776666
Q ss_pred cc
Q 001567 347 QI 348 (1052)
Q Consensus 347 ~~ 348 (1052)
+|
T Consensus 142 ~h 143 (238)
T KOG2444|consen 142 QH 143 (238)
T ss_pred cc
Confidence 55
No 389
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=79.59 E-value=5.1 Score=30.38 Aligned_cols=31 Identities=16% Similarity=0.361 Sum_probs=26.1
Q ss_pred CCeeEEEECCCC---CEEEEEEcCCcEEEEEcCC
Q 001567 308 GPVSCIAWTPDN---SAFAVGWKSRGLTVWSVSG 338 (1052)
Q Consensus 308 g~V~~l~~SpDg---~~Lasg~~Dg~v~vWd~~~ 338 (1052)
|.|.+++|||++ .+||-+-.-+.|-|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 679999999854 4888888889999999974
No 390
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.84 E-value=1.2e+02 Score=37.54 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=26.2
Q ss_pred hhhcCccceEEEcCCccEEEEEeCCcEEEEEEEE
Q 001567 64 VQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ 97 (1052)
Q Consensus 64 l~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~ 97 (1052)
+-.+|+.....||-|-.. .+.+.+|.+++|++.
T Consensus 80 ~w~~~~lI~mgWs~~eeL-I~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 80 LWKHGELIGMGWSDDEEL-ICVQKDGTVHVYGLL 112 (829)
T ss_pred HhcCCCeeeecccCCceE-EEEeccceEEEeecc
Confidence 345788999999987555 455789999999986
No 391
>PRK13684 Ycf48-like protein; Provisional
Probab=78.64 E-value=1.2e+02 Score=34.43 Aligned_cols=118 Identities=10% Similarity=0.080 Sum_probs=63.7
Q ss_pred CCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 001567 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1052)
Q Consensus 257 ~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd 335 (1052)
...+ ++.+.|++.++++|. .|.+.. ..++.++....... .-...++++.+.|+|+.+++|. .|.+.+=+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~gg~tW~~~~~-------~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s 241 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYS-TWEPGQTAWTPHQR-------NSSRRLQSMGFQPDGNLWMLAR-GGQIRFND 241 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEE-EcCCCCCeEEEeeC-------CCcccceeeeEcCCCCEEEEec-CCEEEEcc
Confidence 3455 899999998887765 454322 12231232322222 1346789999999999887765 35543324
Q ss_pred cCCCeEEEEeccc---ccCceeeeeEcCCCCCCccceeeee-eeeEEecCCceEEEE
Q 001567 336 VSGCRLMSTIRQI---SLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAI 388 (1052)
Q Consensus 336 ~~~~~l~~tl~~~---~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~ 388 (1052)
..++......... ....+.++.+.|++ ..++.|. -..+...++++-|..
T Consensus 242 ~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~----~~~~~G~~G~v~~S~d~G~tW~~ 294 (334)
T PRK13684 242 PDDLESWSKPIIPEITNGYGYLDLAYRTPG----EIWAGGGNGTLLVSKDGGKTWEK 294 (334)
T ss_pred CCCCCccccccCCccccccceeeEEEcCCC----CEEEEcCCCeEEEeCCCCCCCeE
Confidence 5555443332211 01235666777765 5555443 333344455554444
No 392
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=78.25 E-value=28 Score=43.81 Aligned_cols=88 Identities=19% Similarity=0.182 Sum_probs=60.7
Q ss_pred CEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEeccc
Q 001567 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI 348 (1052)
Q Consensus 269 ~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~ 348 (1052)
....+|-.+..+..||.+..+..+..-..++ |. ....-+|++=+.+| +||+|+.+|.||++|-.|.+....|.+-
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~--Y~--~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~l 617 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ--YS--SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGL 617 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccc--cc--cCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCC
Confidence 3456777888899999886432221111211 21 33456788877777 7899999999999997776655566665
Q ss_pred ccCceeeeeEcCCC
Q 001567 349 SLSSISSPIVKPNQ 362 (1052)
Q Consensus 349 ~~~~v~s~~~sp~~ 362 (1052)
..+|..+..+.||
T Consensus 618 -G~pI~~iDvt~DG 630 (794)
T PF08553_consen 618 -GDPIIGIDVTADG 630 (794)
T ss_pred -CCCeeEEEecCCC
Confidence 3689999999888
No 393
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=77.77 E-value=1.5e+02 Score=34.67 Aligned_cols=57 Identities=19% Similarity=0.387 Sum_probs=39.1
Q ss_pred EEEEcCCCCEEEEEe-eCC----eEEEEecCCCCceeE-EEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC
Q 001567 261 CASIAPEQQILAVGT-RRG----VVELYDLAESASLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (1052)
Q Consensus 261 ~va~spd~~~lAsgs-~Dg----~V~vwd~~~~~~~~~-~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D 328 (1052)
..++||+|+++|.+- ..| +++++|+++ ++.+. .+.. .. -..+.|++||+.|.-...|
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i~~---------~~-~~~~~W~~d~~~~~y~~~~ 190 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGIEN---------PK-FSSVSWSDDGKGFFYTRFD 190 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEEEE---------EE-SEEEEECTTSSEEEEEECS
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCcccc---------cc-cceEEEeCCCCEEEEEEeC
Confidence 678999999999763 334 599999988 65443 2222 11 1239999999877666543
No 394
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=77.76 E-value=6 Score=29.98 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=26.0
Q ss_pred CcEEEEEEccC-C--CEEEEEeCCceE-EEEccC
Q 001567 453 WPVQHVAASKD-G--MFLAVAGLHGLI-LYDIRQ 482 (1052)
Q Consensus 453 ~~V~~va~Spd-G--~~lavag~dG~i-lwd~~s 482 (1052)
+.||++.|||+ + .+||.+-..|.+ ++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 36899999985 5 699999999999 999986
No 395
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.29 E-value=38 Score=42.52 Aligned_cols=81 Identities=23% Similarity=0.288 Sum_probs=54.0
Q ss_pred eE-EEEEcCCCCEEEEEeeCCeEEEEecCC--------CCce---eEEEEeecCCCCCCCCCCeeEEEECCC---CCEEE
Q 001567 259 AV-CASIAPEQQILAVGTRRGVVELYDLAE--------SASL---IRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAFA 323 (1052)
Q Consensus 259 ~v-~va~spd~~~lAsgs~Dg~V~vwd~~~--------~~~~---~~~l~~~~~~~~~~h~g~V~~l~~SpD---g~~La 323 (1052)
.| .+.+||+|+++|..+..|.+.+.=-.. .++. -++......-+..++...|..+.|+|. +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 45 889999999999988877544422110 0111 112222121223356678999999996 57999
Q ss_pred EEEcCCcEEEEEcCCC
Q 001567 324 VGWKSRGLTVWSVSGC 339 (1052)
Q Consensus 324 sg~~Dg~v~vWd~~~~ 339 (1052)
+-..|+++++||+...
T Consensus 166 vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDP 181 (717)
T ss_pred EEecCCEEEEEecCCC
Confidence 9999999999999653
No 396
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=77.15 E-value=1.5e+02 Score=34.45 Aligned_cols=132 Identities=16% Similarity=0.185 Sum_probs=75.5
Q ss_pred EEEeeCCcE-EEEEe--cCCceeeeeeccccee----cCCCCeEEEEEcCCCCEEEEE-eeCCeEEEEecCCCCceeEEE
Q 001567 224 FVLYSNGQL-MSCSV--SKKGLKLAEFIKIDKE----LGSGDAVCASIAPEQQILAVG-TRRGVVELYDLAESASLIRTV 295 (1052)
Q Consensus 224 ~~~s~dG~~-~~~~~--~d~~i~~w~~~~~~~~----~gh~~~v~va~spd~~~lAsg-s~Dg~V~vwd~~~~~~~~~~l 295 (1052)
++++++|+. +++.. .+.++.+.|..+.+.. .| ..+..++++|+|..+.+. ..+++|.+.|.+. ....+ -
T Consensus 121 ~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~-~ 197 (381)
T COG3391 121 LAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-NTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVR-G 197 (381)
T ss_pred EEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-CCcceEEECCCCCeEEEEecCCCeEEEEeCCC-cceec-c
Confidence 456777754 44444 2455555555443322 22 134689999999965554 4789999999765 33332 1
Q ss_pred EeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC---CcEEEEEcCCCeEEEE-ecccccCceeeeeEcCCC
Q 001567 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGCRLMST-IRQISLSSISSPIVKPNQ 362 (1052)
Q Consensus 296 ~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D---g~v~vWd~~~~~l~~t-l~~~~~~~v~s~~~sp~~ 362 (1052)
.. .... .-..++ ..++++|||..+.+.-.. +.+..-|..++..... ...... ....+.++|++
T Consensus 198 ~~-~~~~-~~~~~P-~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g 264 (381)
T COG3391 198 SV-GSLV-GVGTGP-AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAG 264 (381)
T ss_pred cc-cccc-ccCCCC-ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCC
Confidence 10 0000 002222 678999999966665444 5899999888776655 221111 34456677776
No 397
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.38 E-value=83 Score=36.41 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=50.0
Q ss_pred EEEeeCCeEEEEEcCCcEEEeecCCce--eEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCCcEEEEEEEEecCc
Q 001567 25 IYFKVNNGLLLIASPCHIELWSSSQHK--VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (1052)
Q Consensus 25 v~fSpdg~llA~~sd~~v~IW~~~~~~--~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~ 101 (1052)
+.|.-.++++.++..+.+.=|-+.++. +++.... ...|++.++.||||.+.|||.-++..|.+++...+..
T Consensus 28 vFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm------~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~ 100 (657)
T KOG2377|consen 28 VFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDM------DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS 100 (657)
T ss_pred eeeccCcceEEEEecCCeeEEEEeCCCCCCCceeee------cCCCceeEEEeccCcceEEEEecCceEEEEecCCCch
Confidence 666555565555555556667664332 4444332 2468999999999999999999999999999865443
No 398
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=76.35 E-value=26 Score=42.92 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=66.3
Q ss_pred EeeCCcEEEEEecCCceeeeeeccccee----cCCCCeE-EEEEc--CCCCEEEEEeeCCeEEEEecCC-----CC---c
Q 001567 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIA--PEQQILAVGTRRGVVELYDLAE-----SA---S 290 (1052)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~~~~~~----~gh~~~v-~va~s--pd~~~lAsgs~Dg~V~vwd~~~-----~~---~ 290 (1052)
.|+-+++.++.++..++.+||...+... ....+.| ++.|. |+++.+.+-+-.+.|.+|.-.. .+ .
T Consensus 37 gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 37 GSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred ecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 3556777776666677889998765432 1235666 77764 6888777667788898886421 01 2
Q ss_pred eeEEEEeecCCCCCCCC-CCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 001567 291 LIRTVSLYDWGYSMDDT-GPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1052)
Q Consensus 291 ~~~~l~~~~~~~~~~h~-g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~ 336 (1052)
.++.+...+ |+ .+|.+..|.+||..++.++ +.+.|+|-
T Consensus 117 ~i~~i~i~~------~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 117 PIRKIDISS------HTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred eeEEEEeec------CCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 334443322 44 5799999999997666554 46777754
No 399
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.21 E-value=1.2e+02 Score=33.02 Aligned_cols=65 Identities=14% Similarity=0.273 Sum_probs=39.3
Q ss_pred CCeE-EEEEcCCCCEEEEEeeCC-eEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEE
Q 001567 257 GDAV-CASIAPEQQILAVGTRRG-VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (1052)
Q Consensus 257 ~~~v-~va~spd~~~lAsgs~Dg-~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vW 334 (1052)
...| +++.|.+..+++..+-.| ..-+||.++ +..+..-... -+.-.-+.+.-+++.+.+|.+..+
T Consensus 279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~t-G~vv~~a~l~------------daaGva~~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT-GAVVSEAALP------------DAAGVAAAKGGFAVSSGQGRIIFY 345 (366)
T ss_pred HhhhhheeecccCCeEEEecCCCCeEEEEEcCC-CcEEeccccc------------ccccceeccCceEEecCCceEEec
Confidence 3567 899998888888777766 456899987 6544322220 111112344556666666666655
No 400
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.84 E-value=28 Score=44.37 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=48.9
Q ss_pred CcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEe-cCccceeeeEEEEEEEeCCEEEEEEEecCC------CeEEEE
Q 001567 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF-GDITQEQKIQSKGLLWLGKIIVVCNYIDSS------NTYELL 524 (1052)
Q Consensus 453 ~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f-~~~~~e~~~~v~gl~W~~~~li~~~~~~~~------~~~elr 524 (1052)
...++++|||-|+.+++|-..|++ -|...-..-+.. +-...| .+.|.+++|...+-.+..|...+ ..++.+
T Consensus 199 ~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-~yrvl~v~Wl~t~eflvvy~n~ts~~~dpd~y~~~ 277 (1405)
T KOG3630|consen 199 NSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-NYRVLSVTWLSTQEFLVVYGNVTSETDDPDSYDQK 277 (1405)
T ss_pred cceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-CcceeEEEEecceeEEEEecccccCcCCchhhhhc
Confidence 357899999999999999999999 777544322222 222223 46788999987655444453222 235556
Q ss_pred EeeC
Q 001567 525 FYPR 528 (1052)
Q Consensus 525 ly~~ 528 (1052)
+|..
T Consensus 278 ~~k~ 281 (1405)
T KOG3630|consen 278 MYKI 281 (1405)
T ss_pred cccc
Confidence 6655
No 401
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=75.75 E-value=27 Score=41.59 Aligned_cols=68 Identities=25% Similarity=0.419 Sum_probs=48.0
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeE-EEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC-CcEEEEEcC
Q 001567 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVWSVS 337 (1052)
Q Consensus 261 ~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~-~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D-g~v~vWd~~ 337 (1052)
.+.|+|+...|++=.....-.++++..+...+. -++ -.|-|.|.+|++||++|+++-.. =.-.|||-.
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~---------~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK---------TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEEecc---------CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 567999999998877666556777765333222 222 47899999999999988887543 345688754
No 402
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=74.99 E-value=84 Score=30.42 Aligned_cols=114 Identities=16% Similarity=0.215 Sum_probs=65.0
Q ss_pred EEcCCCCEEEEEeeCCeEEEEecCCC-------CceeEEEEeecCCCCCCCCCCeeEEE---ECC--CCCEEEEEEcCCc
Q 001567 263 SIAPEQQILAVGTRRGVVELYDLAES-------ASLIRTVSLYDWGYSMDDTGPVSCIA---WTP--DNSAFAVGWKSRG 330 (1052)
Q Consensus 263 a~spd~~~lAsgs~Dg~V~vwd~~~~-------~~~~~~l~~~~~~~~~~h~g~V~~l~---~Sp--Dg~~Lasg~~Dg~ 330 (1052)
.|......|+.++.-|+|.|++.... ...++.+.. ...|++|+ |.| +...|..|+. ..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---------n~~italaaG~l~~~~~~D~LliGt~-t~ 74 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---------NQEITALAAGRLKPDDGRDCLLIGTQ-TS 74 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---------CCceEEEEEEecCCCCCcCEEEEecc-ce
Confidence 45555667888888899999876531 123344443 44566664 433 3457888887 68
Q ss_pred EEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeee--eeeEEecCCceEEEE
Q 001567 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAI 388 (1052)
Q Consensus 331 v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~ 388 (1052)
+..||+....-+..-. - .+.|+++.+-.-+......++.|. ++.-++.+|.+++-+
T Consensus 75 llaYDV~~N~d~Fyke-~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 75 LLAYDVENNSDLFYKE-V-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred EEEEEcccCchhhhhh-C-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 9999997654332211 1 245666666443322224444444 444555566555443
No 403
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=74.79 E-value=1.5e+02 Score=33.26 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=42.5
Q ss_pred EEEEcCCCCEEEEEee---------CCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC-Cc
Q 001567 261 CASIAPEQQILAVGTR---------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RG 330 (1052)
Q Consensus 261 ~va~spd~~~lAsgs~---------Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D-g~ 330 (1052)
.+.+.|+|++-++... -..-.||.++..+..++.+.. |-..-+.|+|||||+.|..+... +.
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~--------~~~~~NGla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD--------DLTIPNGLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC--------cEEecCceEECCCCCEEEEEeCCCCe
Confidence 6677888887665443 112256666632444444433 34445789999999877777553 56
Q ss_pred EEEEEcC
Q 001567 331 LTVWSVS 337 (1052)
Q Consensus 331 v~vWd~~ 337 (1052)
|.-++..
T Consensus 187 i~r~~~d 193 (307)
T COG3386 187 IHRYDLD 193 (307)
T ss_pred EEEEecC
Confidence 6666654
No 404
>PHA02713 hypothetical protein; Provisional
Probab=74.46 E-value=73 Score=39.10 Aligned_cols=28 Identities=11% Similarity=0.332 Sum_probs=24.7
Q ss_pred CCCEEEEEeCCc--eE-EEEccCCcEEEecC
Q 001567 463 DGMFLAVAGLHG--LI-LYDIRQKKWRVFGD 490 (1052)
Q Consensus 463 dG~~lavag~dG--~i-lwd~~s~~w~~f~~ 490 (1052)
+|+..++||.+| .+ .||..+++|.....
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchhh
Confidence 899999999999 77 99999999987643
No 405
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=73.90 E-value=77 Score=36.55 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=33.8
Q ss_pred CeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCc---eeEEEEeecCCCC-CCCCCCeeEEEECCCCCEEEEEE
Q 001567 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESAS---LIRTVSLYDWGYS-MDDTGPVSCIAWTPDNSAFAVGW 326 (1052)
Q Consensus 258 ~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~---~~~~l~~~~~~~~-~~h~g~V~~l~~SpDg~~Lasg~ 326 (1052)
.+..+++.+++ ++++ +.+...++.+.+..+. ....+- ..++.. ..+......++|.|||.+.++-+
T Consensus 73 ~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~-~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLL-SGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEE-EccCCCCCcccccccCceECCCCCEEEecc
Confidence 33478888888 5554 4444334445432121 111111 112211 11234578899999998666544
No 406
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=70.96 E-value=6.1 Score=28.94 Aligned_cols=28 Identities=29% Similarity=0.564 Sum_probs=18.9
Q ss_pred cCccceEEEcCCccEEEEEeCC---cEEEEE
Q 001567 67 EGENLQAVWSPDTKLIAVVTSS---LYLHIF 94 (1052)
Q Consensus 67 ~G~~~~v~wSPDg~~Lav~t~d---g~l~i~ 94 (1052)
.+......|||||+.|+-++.. |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3556789999999988876643 455555
No 407
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=70.93 E-value=13 Score=45.52 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=29.9
Q ss_pred CCCeeEEEECC----CCCEEEEEEcCCcEEEEEcCCCeEEEEec
Q 001567 307 TGPVSCIAWTP----DNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1052)
Q Consensus 307 ~g~V~~l~~Sp----Dg~~Lasg~~Dg~v~vWd~~~~~l~~tl~ 346 (1052)
.+.+.+++.++ +..+|++-+.|+++|+||+.+++++.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 214 SSVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ---EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CCccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 35567777777 67899999999999999999998876653
No 408
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=70.77 E-value=4 Score=50.15 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=46.0
Q ss_pred EeecCCeEEEEecCCcEEEEeccCccccceeecccCCCCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEec
Q 001567 138 IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (1052)
Q Consensus 138 i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~ 217 (1052)
+++..-++-++.++|.++++.|+.....-+ ..|...++++++-
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~-------------------------------------rsHs~~~~d~a~~ 233 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALRSLF-------------------------------------RSHSQRVTDMAFF 233 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHHHHH-------------------------------------HhcCCCcccHHHH
Confidence 445555566667788999999986543211 1122223333321
Q ss_pred C-CcceEEEEeeCCcEEEEEecCCceeeeeec
Q 001567 218 L-PMRLLFVLYSNGQLMSCSVSKKGLKLAEFI 248 (1052)
Q Consensus 218 ~-~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~ 248 (1052)
. ......-+||||.++++.+.||.++.|+..
T Consensus 234 ~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 234 AEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred hhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 1 122334579999999999999999988753
No 409
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=70.63 E-value=94 Score=38.27 Aligned_cols=74 Identities=18% Similarity=0.302 Sum_probs=47.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEEC--CCCCEEEEEEcCCcEE
Q 001567 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT--PDNSAFAVGWKSRGLT 332 (1052)
Q Consensus 255 gh~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~S--pDg~~Lasg~~Dg~v~ 332 (1052)
|-.++..+.-|.-++.-++-+...++.|||... +.+...-.. ...+.|.++.|+ |||+.+.+-+-.+.|.
T Consensus 28 ~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~-~~lE~~~~f-------~~~~~I~dLDWtst~d~qsiLaVGf~~~v~ 99 (631)
T PF12234_consen 28 GISNPSLISGSSIKKIAVVDSSRSELTIWDTRS-GVLEYEESF-------SEDDPIRDLDWTSTPDGQSILAVGFPHHVL 99 (631)
T ss_pred CCCCcceEeecccCcEEEEECCCCEEEEEEcCC-cEEEEeeee-------cCCCceeeceeeecCCCCEEEEEEcCcEEE
Confidence 334444555556555555544456899999976 442222111 157899999996 6898777766678898
Q ss_pred EEEc
Q 001567 333 VWSV 336 (1052)
Q Consensus 333 vWd~ 336 (1052)
++.-
T Consensus 100 l~~Q 103 (631)
T PF12234_consen 100 LYTQ 103 (631)
T ss_pred EEEc
Confidence 8864
No 410
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.91 E-value=20 Score=42.02 Aligned_cols=91 Identities=14% Similarity=0.123 Sum_probs=57.5
Q ss_pred EEEecCCceeeeeecccce----e-cCCC----CeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCcee-EEEEeecCCC
Q 001567 234 SCSVSKKGLKLAEFIKIDK----E-LGSG----DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLI-RTVSLYDWGY 302 (1052)
Q Consensus 234 ~~~~~d~~i~~w~~~~~~~----~-~gh~----~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~-~~l~~~~~~~ 302 (1052)
+.|.++..+.-||..-... + ++|. .-. |.+-..+| +||+||.+|.||+||- . +... ..+.+
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i-~~~AKTAlPg----- 469 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-I-GRRAKTALPG----- 469 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-h-hhhhhhcccc-----
Confidence 3456677777787653222 1 3332 112 55555554 7999999999999996 3 3222 22222
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEc
Q 001567 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (1052)
Q Consensus 303 ~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~ 336 (1052)
-..+|..|.-+.||+++...+. ..+.+-++
T Consensus 470 ---LG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 470 ---LGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred ---cCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 5678999999999998877665 45544443
No 411
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=69.73 E-value=1.2e+02 Score=34.29 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=16.4
Q ss_pred cceeeee---eeeEEecCCceEEEEecC
Q 001567 367 EPLMSGT---SMMQWDEYGYRLYAIEEG 391 (1052)
Q Consensus 367 ~~l~sg~---~~~~W~~~~~~l~~~~~~ 391 (1052)
+.+++|. .-+.|++.+++++....+
T Consensus 174 ~i~A~GlRN~~~~~~d~~tg~l~~~d~G 201 (331)
T PF07995_consen 174 EIYAYGLRNPFGLAFDPNTGRLWAADNG 201 (331)
T ss_dssp TEEEE--SEEEEEEEETTTTEEEEEEE-
T ss_pred EEEEeCCCccccEEEECCCCcEEEEccC
Confidence 6667776 566788888888877654
No 412
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.70 E-value=1.3e+02 Score=35.51 Aligned_cols=146 Identities=13% Similarity=0.141 Sum_probs=87.4
Q ss_pred EEECCCCCE-EEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCC----Cccceeeee--eeeEEecCC--c
Q 001567 313 IAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC----KYEPLMSGT--SMMQWDEYG--Y 383 (1052)
Q Consensus 313 l~~SpDg~~-Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~----~~~~l~sg~--~~~~W~~~~--~ 383 (1052)
|-...|.+. |.++..-.++.=-|+..|+.+..-.-+ ..|+-+.+.|+... ..+.++.-+ .+.-||+.- .
T Consensus 339 mL~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~--~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~ 416 (644)
T KOG2395|consen 339 MLHRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFE--DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK 416 (644)
T ss_pred hhhccccceEeeCCCCcCcceeeecccceeeeEeecc--CCcceeeccCCcchhcccccccEEeecCCceEEecccccCc
Confidence 333445543 445555577888888999888776655 33777777777631 112232222 667788752 2
Q ss_pred eEEEEecCCc----ccEEEEec--cceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeeeccCcccccCCCcEEE
Q 001567 384 RLYAIEEGSS----ERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (1052)
Q Consensus 384 ~l~~~~~~~~----~~v~~~s~--~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~ 457 (1052)
..+....+|+ ...-++.. ..+++.||.+|.+++++- .+.. .-..+-+-..+|..
T Consensus 417 ~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~-------------------AKTAlPgLG~~I~h 476 (644)
T KOG2395|consen 417 NKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRR-------------------AKTALPGLGDAIKH 476 (644)
T ss_pred ceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhh-------------------hhhcccccCCceee
Confidence 2333333332 12233333 457888899999988875 2211 01233356679999
Q ss_pred EEEccCCCEEEEEeCCceEEEEc
Q 001567 458 VAASKDGMFLAVAGLHGLILYDI 480 (1052)
Q Consensus 458 va~SpdG~~lavag~dG~ilwd~ 480 (1052)
+..+.||+++...+..-.++-++
T Consensus 477 VdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 477 VDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred EEeeccCcEEEEecccEEEEEEE
Confidence 99999999998776665555554
No 413
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=69.25 E-value=1.6e+02 Score=34.39 Aligned_cols=136 Identities=11% Similarity=0.019 Sum_probs=70.0
Q ss_pred EEeeCCcEEEEEecCCceeeeeeccc--cee-cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeE--EEEee
Q 001567 225 VLYSNGQLMSCSVSKKGLKLAEFIKI--DKE-LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIR--TVSLY 298 (1052)
Q Consensus 225 ~~s~dG~~~~~~~~d~~i~~w~~~~~--~~~-~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~--~l~~~ 298 (1052)
..++||++++.+....-.+.|+.-.. +.. ......+ .+.+.+++.++++| .+|.+ ++..+. +.... .+...
T Consensus 245 ~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~-G~~~~~~~f~~~ 321 (398)
T PLN00033 245 NRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGT-GLTEEDFDFEEA 321 (398)
T ss_pred EEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCC-CCcccccceeec
Confidence 45678877776654433333332100 000 1223344 88899999988776 55654 333333 33111 22221
Q ss_pred cCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecc--cccCceeeeeEcCCCCCCccceeee
Q 001567 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ--ISLSSISSPIVKPNQDCKYEPLMSG 372 (1052)
Q Consensus 299 ~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~--~~~~~v~s~~~sp~~~~~~~~l~sg 372 (1052)
..+ .....+.++.|.+|+..+++|.. |.+ +....+++.....+. .-......+.|.+++ +.++.|
T Consensus 322 ~~~---~~~~~l~~v~~~~d~~~~a~G~~-G~v-~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~----~g~~~G 388 (398)
T PLN00033 322 DIK---SRGFGILDVGYRSKKEAWAAGGS-GIL-LRSTDGGKSWKRDKGADNIAANLYSVKFFDDK----KGFVLG 388 (398)
T ss_pred ccC---CCCcceEEEEEcCCCcEEEEECC-CcE-EEeCCCCcceeEccccCCCCcceeEEEEcCCC----ceEEEe
Confidence 100 01235899999999988877754 544 444566655544331 112345566665544 445544
No 414
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=69.00 E-value=62 Score=34.23 Aligned_cols=128 Identities=10% Similarity=0.143 Sum_probs=74.5
Q ss_pred EeeCCcEEEEEecCCceeeeeecccce---ecCCC-CeE--------EEEEcCCCCEE-EEEeeCCeEEEEecCCC-Cc-
Q 001567 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSG-DAV--------CASIAPEQQIL-AVGTRRGVVELYDLAES-AS- 290 (1052)
Q Consensus 226 ~s~dG~~~~~~~~d~~i~~w~~~~~~~---~~gh~-~~v--------~va~spd~~~l-Asgs~Dg~V~vwd~~~~-~~- 290 (1052)
++|+|+++.-...+.+.. .+...+.. ..+|. ..+ .++|+.+.+.+ .+-+.+-+|.-||.+-. +.
T Consensus 116 vdP~Gryy~GtMad~~~~-le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~ 194 (310)
T KOG4499|consen 116 VDPDGRYYGGTMADFGDD-LEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL 194 (310)
T ss_pred cCCCCceeeeeecccccc-ccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccc
Confidence 478999877666554321 11111111 12332 221 45777776654 45667788888985432 21
Q ss_pred ----eeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEc
Q 001567 291 ----LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (1052)
Q Consensus 291 ----~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~s 359 (1052)
.+..++..+ +. +|.-+ -.++...+|...++.+.-++|...|..+|+.+.++.-. +..+++++|-
T Consensus 195 snr~~i~dlrk~~-~~--e~~~P-DGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFg 262 (310)
T KOG4499|consen 195 SNRKVIFDLRKSQ-PF--ESLEP-DGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFG 262 (310)
T ss_pred cCcceeEEeccCC-Cc--CCCCC-CcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEec
Confidence 122222211 00 11111 12344568888899998899999999999999888766 6778888884
No 415
>PHA03098 kelch-like protein; Provisional
Probab=68.44 E-value=1.4e+02 Score=36.26 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=22.8
Q ss_pred CCCEEEEEeCC-----ceE-EEEccCCcEEEecC
Q 001567 463 DGMFLAVAGLH-----GLI-LYDIRQKKWRVFGD 490 (1052)
Q Consensus 463 dG~~lavag~d-----G~i-lwd~~s~~w~~f~~ 490 (1052)
+|+.++.||.+ ..+ .||..+++|..+..
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 78888888875 467 99999999998754
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=68.41 E-value=1.4e+02 Score=34.43 Aligned_cols=96 Identities=11% Similarity=0.107 Sum_probs=49.3
Q ss_pred CCeEEEEEcCCCCEEEEEe-----------eCC-eEEEEecCC-CCce--eEEEEeecCCCCCCCCCCeeEEEECCCCCE
Q 001567 257 GDAVCASIAPEQQILAVGT-----------RRG-VVELYDLAE-SASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSA 321 (1052)
Q Consensus 257 ~~~v~va~spd~~~lAsgs-----------~Dg-~V~vwd~~~-~~~~--~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~ 321 (1052)
..++.++|.++|++.++-. ..+ .|.+++-.+ .+.. ...+.. .-.....++|.++| +
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~--------~l~~p~Gi~~~~~G-l 84 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE--------ELSMVTGLAVAVGG-V 84 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec--------CCCCccceeEecCC-E
Confidence 4566788888888766542 223 566665332 1221 122221 22345789999999 4
Q ss_pred EEEEEcCCcEEEEEcCCC--------eEEEEeccc---ccCceeeeeEcCCC
Q 001567 322 FAVGWKSRGLTVWSVSGC--------RLMSTIRQI---SLSSISSPIVKPNQ 362 (1052)
Q Consensus 322 Lasg~~Dg~v~vWd~~~~--------~l~~tl~~~---~~~~v~s~~~sp~~ 362 (1052)
++ +..+..+++.+..+. .++..+... +....+.+++.|++
T Consensus 85 yV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG 135 (367)
T TIGR02604 85 YV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG 135 (367)
T ss_pred EE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC
Confidence 44 445444444455331 122223221 12346677888876
No 417
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=67.78 E-value=15 Score=42.73 Aligned_cols=95 Identities=19% Similarity=0.235 Sum_probs=57.9
Q ss_pred EEEEEcCCCCEEEEEeeCCeEEE---EecCCCC----ceeEEEEeecCCCCCCCCCCeeEEEEC-----------CCCCE
Q 001567 260 VCASIAPEQQILAVGTRRGVVEL---YDLAESA----SLIRTVSLYDWGYSMDDTGPVSCIAWT-----------PDNSA 321 (1052)
Q Consensus 260 v~va~spd~~~lAsgs~Dg~V~v---wd~~~~~----~~~~~l~~~~~~~~~~h~g~V~~l~~S-----------pDg~~ 321 (1052)
++++.+|++.+||.|..+..|-+ |+.+..+ .......+. ...+....|+++.|- ||..+
T Consensus 5 ~~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~---l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~ 81 (415)
T PF14655_consen 5 CSISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGP---LDDEPGECITSILCLPLSSQKRSTGGPDWTC 81 (415)
T ss_pred ceEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeee---ccCCCCCEEEEEEEEEeecccccCCCCCcEE
Confidence 36788899999999888876655 6442212 112222221 000011456666553 56789
Q ss_pred EEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEc
Q 001567 322 FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (1052)
Q Consensus 322 Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~s 359 (1052)
+|+|..+|.|++++..|..++..+- | ..+|..+...
T Consensus 82 I~VG~ssG~vrfyte~G~LL~~Q~~-h-~~pV~~ik~~ 117 (415)
T PF14655_consen 82 IAVGTSSGYVRFYTENGVLLLSQLL-H-EEPVLKIKCR 117 (415)
T ss_pred EEEEecccEEEEEeccchHHHHHhc-C-ccceEEEEec
Confidence 9999999999999997765443332 3 4667666654
No 418
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=66.32 E-value=1.7 Score=53.16 Aligned_cols=65 Identities=17% Similarity=0.312 Sum_probs=44.3
Q ss_pred EEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEE-----------EECCCCCEEEEEEcCCc
Q 001567 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI-----------AWTPDNSAFAVGWKSRG 330 (1052)
Q Consensus 262 va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l-----------~~SpDg~~Lasg~~Dg~ 330 (1052)
+-|-++..++..|-.+|+|++-.++. .. ...+.+ |..++..+ ..||||+.+|.+..||.
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~r-a~-~~l~rs--------Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~ 258 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINR-AL-RSLFRS--------HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS 258 (1283)
T ss_pred cccccccceeeeccCCCceeEeeech-HH-HHHHHh--------cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence 33444567788888899999887764 21 111122 43333332 36999999999999999
Q ss_pred EEEEEc
Q 001567 331 LTVWSV 336 (1052)
Q Consensus 331 v~vWd~ 336 (1052)
++.|..
T Consensus 259 v~f~Qi 264 (1283)
T KOG1916|consen 259 VGFYQI 264 (1283)
T ss_pred cceeee
Confidence 999976
No 419
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=65.59 E-value=9.2 Score=25.90 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=18.9
Q ss_pred cceEEEcCCccEEEEEeCCcEEEEEE
Q 001567 70 NLQAVWSPDTKLIAVVTSSLYLHIFK 95 (1052)
Q Consensus 70 ~~~v~wSPDg~~Lav~t~dg~l~i~~ 95 (1052)
+.+++-++ +++|++|+.++||+|.
T Consensus 4 i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 4 IEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred EEEEEccC--CEEEEEeCCCeEEecC
Confidence 34666654 5999999999999984
No 420
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=64.69 E-value=16 Score=26.69 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=16.3
Q ss_pred CCCcEEEEEEccCCCEEEEEeCC
Q 001567 451 QNWPVQHVAASKDGMFLAVAGLH 473 (1052)
Q Consensus 451 h~~~V~~va~SpdG~~lavag~d 473 (1052)
..+.-...+|||||++|+-++..
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEEC
T ss_pred CCccccCEEEecCCCEEEEEecC
Confidence 34567789999999999866543
No 421
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=62.89 E-value=2.7e+02 Score=34.87 Aligned_cols=73 Identities=12% Similarity=0.166 Sum_probs=50.9
Q ss_pred CeE-EEEEc--CCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCC-----CC-EEEEEEcC
Q 001567 258 DAV-CASIA--PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-----NS-AFAVGWKS 328 (1052)
Q Consensus 258 ~~v-~va~s--pd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpD-----g~-~Lasg~~D 328 (1052)
... .++++ ...++||+++....|.||-............ +..|...|-+|+|-++ |. .+++++-.
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~------s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~ 237 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP------SHQHSHNIPNVSFLDDDLDPNGHVKVVATDIS 237 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc------ccccccCCCeeEeecCCCCCccceEEEEEecc
Confidence 455 88998 8899999999999999887654111100000 1125667899999774 32 78888889
Q ss_pred CcEEEEEc
Q 001567 329 RGLTVWSV 336 (1052)
Q Consensus 329 g~v~vWd~ 336 (1052)
|.+.+|++
T Consensus 238 G~v~~~~I 245 (717)
T PF08728_consen 238 GEVWTFKI 245 (717)
T ss_pred CcEEEEEE
Confidence 99998887
No 422
>PRK10115 protease 2; Provisional
Probab=62.87 E-value=4.1e+02 Score=33.60 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=33.6
Q ss_pred EEEeeCCeEEEEEcCC------cEEEeecCCceeEEEEEecChhhhhhcCccceEEEcCCccEEEEEeCC
Q 001567 25 IYFKVNNGLLLIASPC------HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS 88 (1052)
Q Consensus 25 v~fSpdg~llA~~sd~------~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSPDg~~Lav~t~d 88 (1052)
+.+||||++||.+.|. ++++-+.. .+..+ .+.+. +.-..++|+||++.|+..+.+
T Consensus 132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~-tg~~l------~~~i~--~~~~~~~w~~D~~~~~y~~~~ 192 (686)
T PRK10115 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLE-TGNWY------PELLD--NVEPSFVWANDSWTFYYVRKH 192 (686)
T ss_pred EEECCCCCEEEEEecCCCcEEEEEEEEECC-CCCCC------Ccccc--CcceEEEEeeCCCEEEEEEec
Confidence 5689999999877432 46666664 32111 11111 111369999999988887654
No 423
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=61.12 E-value=3e+02 Score=32.11 Aligned_cols=113 Identities=11% Similarity=0.138 Sum_probs=66.6
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEecCCCCce-eEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCC
Q 001567 261 CASIAPEQQILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (1052)
Q Consensus 261 ~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~-~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~ 339 (1052)
.+..++++.++++|..-...+-||- +.. ...... .....+..+.|.+||..++++ .+|+ .+|+..++
T Consensus 243 ~v~~~~dG~~~~vg~~G~~~~s~d~---G~~~W~~~~~-------~~~~~l~~v~~~~dg~l~l~g-~~G~-l~~S~d~G 310 (398)
T PLN00033 243 TVNRSPDGDYVAVSSRGNFYLTWEP---GQPYWQPHNR-------ASARRIQNMGWRADGGLWLLT-RGGG-LYVSKGTG 310 (398)
T ss_pred eEEEcCCCCEEEEECCccEEEecCC---CCcceEEecC-------CCccceeeeeEcCCCCEEEEe-CCce-EEEecCCC
Confidence 5667889988888765544444442 332 122222 135678999999999988776 4355 46666665
Q ss_pred eE-----EEEeccc-ccCceeeeeEcCCCCCCccceeeee-eeeEEecCCceEEEEe
Q 001567 340 RL-----MSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIE 389 (1052)
Q Consensus 340 ~l-----~~tl~~~-~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~ 389 (1052)
.. +..+... ....+.++.+.+++ ..++.|. -.+....++++-|...
T Consensus 311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~----~~~a~G~~G~v~~s~D~G~tW~~~ 363 (398)
T PLN00033 311 LTEEDFDFEEADIKSRGFGILDVGYRSKK----EAWAAGGSGILLRSTDGGKSWKRD 363 (398)
T ss_pred CcccccceeecccCCCCcceEEEEEcCCC----cEEEEECCCcEEEeCCCCcceeEc
Confidence 42 2222211 12347778888776 7777776 3444455666666554
No 424
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.58 E-value=75 Score=37.37 Aligned_cols=77 Identities=10% Similarity=0.130 Sum_probs=47.1
Q ss_pred EEEeeCCeEEEEEcCCcEEEeecCC---------ceeE--EEEEecChhhhh---hcCccceEEEcCCc---cEEEEEeC
Q 001567 25 IYFKVNNGLLLIASPCHIELWSSSQ---------HKVR--LGKYKRDSESVQ---REGENLQAVWSPDT---KLIAVVTS 87 (1052)
Q Consensus 25 v~fSpdg~llA~~sd~~v~IW~~~~---------~~~~--l~~~~r~~~sl~---~~G~~~~v~wSPDg---~~Lav~t~ 87 (1052)
|..|+.|.+.|.++.+.|.|-...+ .+.+ .+........+- .+=....++|.||+ ..|.+-++
T Consensus 109 vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~s 188 (741)
T KOG4460|consen 109 VLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTS 188 (741)
T ss_pred EEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEec
Confidence 4467889999988877666654411 1111 111111000010 11234578999998 68999999
Q ss_pred CcEEEEEEEEecCc
Q 001567 88 SLYLHIFKVQITEK 101 (1052)
Q Consensus 88 dg~l~i~~l~~~~~ 101 (1052)
|+.+++|++.....
T Consensus 189 dnviRiy~lS~~te 202 (741)
T KOG4460|consen 189 DNVIRIYSLSEPTE 202 (741)
T ss_pred CcEEEEEecCCcch
Confidence 99999999976554
No 425
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=58.93 E-value=3e+02 Score=30.85 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=42.1
Q ss_pred EEEEEecCCceeeeeeccccee-cCCCCeE-E-EEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCC
Q 001567 232 LMSCSVSKKGLKLAEFIKIDKE-LGSGDAV-C-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG 308 (1052)
Q Consensus 232 ~~~~~~~d~~i~~w~~~~~~~~-~gh~~~v-~-va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g 308 (1052)
++.+....+.+.-|+..+++.. ..+.+.+ + ..+..++.++++ .. -+.+++.++ +..+..+....-+ ....
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~--~~-g~~~~~~~~-~~~~t~~~~~~~~---~~~~ 111 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIAC--EH-GVRLLDPDT-GGKITLLAEPEDG---LPLN 111 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEE--cc-ccEEEeccC-CceeEEeccccCC---CCcC
Confidence 5555555666666666544221 1112222 3 344455544443 33 356777654 4432322221100 0123
Q ss_pred CeeEEEECCCCCEEEEEE
Q 001567 309 PVSCIAWTPDNSAFAVGW 326 (1052)
Q Consensus 309 ~V~~l~~SpDg~~Lasg~ 326 (1052)
.-+.+...|||.+-++.-
T Consensus 112 r~ND~~v~pdG~~wfgt~ 129 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDM 129 (307)
T ss_pred CCCceeEcCCCCEEEeCC
Confidence 456788899998766543
No 426
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=58.06 E-value=4e+02 Score=32.01 Aligned_cols=75 Identities=11% Similarity=-0.038 Sum_probs=41.8
Q ss_pred CEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCee--EEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEec
Q 001567 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS--CIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (1052)
Q Consensus 269 ~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~--~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~ 346 (1052)
..+.+++.+|.|.-.|..+ ++.+-....... ... ....+. .++.. ++..+..++.|+.|.-.|..+++.+....
T Consensus 62 g~vy~~~~~g~l~AlD~~t-G~~~W~~~~~~~-~~~-~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 62 GDMYFTTSHSALFALDAAT-GKVLWRYDPKLP-ADR-GCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CEEEEeCCCCcEEEEECCC-ChhhceeCCCCC-ccc-cccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 3455667778888888776 554433322100 000 000110 01111 22577778888999999999888877665
Q ss_pred c
Q 001567 347 Q 347 (1052)
Q Consensus 347 ~ 347 (1052)
.
T Consensus 138 ~ 138 (488)
T cd00216 138 N 138 (488)
T ss_pred C
Confidence 3
No 427
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=57.90 E-value=1.8e+02 Score=28.17 Aligned_cols=68 Identities=18% Similarity=0.208 Sum_probs=42.8
Q ss_pred CCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC----CCCEEEEEEcCCcEEEEEcCCCeEE
Q 001567 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP----DNSAFAVGWKSRGLTVWSVSGCRLM 342 (1052)
Q Consensus 267 d~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp----Dg~~Lasg~~Dg~v~vWd~~~~~l~ 342 (1052)
+...|..|+.. ++..||+.. ...+..-. -...|+++.+-. +...+++|+. ..|.-+|..|...+
T Consensus 63 ~~D~LliGt~t-~llaYDV~~-N~d~Fyke---------~~DGvn~i~~g~~~~~~~~l~ivGGn-csi~Gfd~~G~e~f 130 (136)
T PF14781_consen 63 GRDCLLIGTQT-SLLAYDVEN-NSDLFYKE---------VPDGVNAIVIGKLGDIPSPLVIVGGN-CSIQGFDYEGNEIF 130 (136)
T ss_pred CcCEEEEeccc-eEEEEEccc-Cchhhhhh---------CccceeEEEEEecCCCCCcEEEECce-EEEEEeCCCCcEEE
Confidence 46678887765 689999987 33222111 346678877732 3445555554 67888888887766
Q ss_pred EEec
Q 001567 343 STIR 346 (1052)
Q Consensus 343 ~tl~ 346 (1052)
.+..
T Consensus 131 WtVt 134 (136)
T PF14781_consen 131 WTVT 134 (136)
T ss_pred EEec
Confidence 6543
No 428
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=57.60 E-value=67 Score=37.02 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=24.8
Q ss_pred ccceEEEcCCccEEEEEeCCcEEEEEEEEec
Q 001567 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1052)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~ 99 (1052)
.+..+...|||+.+.+-+. ..+.+|+++..
T Consensus 222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r 251 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKR 251 (733)
T ss_pred chHhhEECCCCCEEEEecC-CeEEEEeeccc
Confidence 4557889999999999887 68999999743
No 429
>PHA02790 Kelch-like protein; Provisional
Probab=57.59 E-value=3.3e+02 Score=32.66 Aligned_cols=27 Identities=26% Similarity=0.648 Sum_probs=21.7
Q ss_pred cCCCEEEEEeCC-----ceE-EEEccCCcEEEe
Q 001567 462 KDGMFLAVAGLH-----GLI-LYDIRQKKWRVF 488 (1052)
Q Consensus 462 pdG~~lavag~d-----G~i-lwd~~s~~w~~f 488 (1052)
-+|+..++||.+ ..+ .||..+++|...
T Consensus 445 ~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 445 VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 478888999865 357 999999999764
No 430
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=57.59 E-value=2.6e+02 Score=35.87 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=51.9
Q ss_pred EEEEEcC-CCCEEEEEeeCCeEEEEecCCC-CceeEE--EEeecCC---CCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 001567 260 VCASIAP-EQQILAVGTRRGVVELYDLAES-ASLIRT--VSLYDWG---YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1052)
Q Consensus 260 v~va~sp-d~~~lAsgs~Dg~V~vwd~~~~-~~~~~~--l~~~~~~---~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~ 332 (1052)
+.++||| +.+.+|+-...|...||++... ...... +.....+ +..+....-..+.|.++-..|.++.. ..+.
T Consensus 149 aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~ 227 (765)
T PF10214_consen 149 ADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLM 227 (765)
T ss_pred ceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceE
Confidence 3899999 4568999999999999999220 110111 1111111 11112233457899999888888887 6888
Q ss_pred EEEcCCCeE
Q 001567 333 VWSVSGCRL 341 (1052)
Q Consensus 333 vWd~~~~~l 341 (1052)
+.|+.+...
T Consensus 228 ~~d~~~~~~ 236 (765)
T PF10214_consen 228 LIDFESNWQ 236 (765)
T ss_pred EEECCCCCc
Confidence 999887643
No 431
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=57.45 E-value=4.2e+02 Score=32.61 Aligned_cols=68 Identities=21% Similarity=0.330 Sum_probs=42.3
Q ss_pred EEccCCCEEEEEeCCc------eE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEE-EEEEEecCCCeEEEEEeeC
Q 001567 459 AASKDGMFLAVAGLHG------LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKII-VVCNYIDSSNTYELLFYPR 528 (1052)
Q Consensus 459 a~SpdG~~lavag~dG------~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~~~~l-i~~~~~~~~~~~elrly~~ 528 (1052)
+..-+|+..++||.+| .+ .||..+++|+....-...+ ...|++-.++.| ++|++++......+..|+.
T Consensus 423 v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R--~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 423 VAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR--SGFGVAVLNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred EEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc--ccceEEEECCEEEEECCccCCCccceEEEEcC
Confidence 3345899999999654 56 8999999999764432222 123566666654 5555554334445666765
No 432
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.09 E-value=48 Score=35.17 Aligned_cols=74 Identities=9% Similarity=0.043 Sum_probs=48.4
Q ss_pred EcCCCCEEEEEeeCCeEEEEecCCCCceeEEE-EeecCCC-----CCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcC
Q 001567 264 IAPEQQILAVGTRRGVVELYDLAESASLIRTV-SLYDWGY-----SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (1052)
Q Consensus 264 ~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l-~~~~~~~-----~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~ 337 (1052)
+..++.++.+-+.+|.+++||+.+ .+.+..- +....-. .......|..+..+.+|.-+++-+. |....|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~-~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKK-GKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCC-CeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEeccc
Confidence 455677888889999999999987 4332211 1000000 0025677899999999988777654 778888875
Q ss_pred CC
Q 001567 338 GC 339 (1052)
Q Consensus 338 ~~ 339 (1052)
=+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 43
No 433
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=54.08 E-value=4e+02 Score=31.07 Aligned_cols=62 Identities=21% Similarity=0.154 Sum_probs=34.9
Q ss_pred CCeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEE
Q 001567 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA 323 (1052)
Q Consensus 257 ~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~La 323 (1052)
.+.|++++|-....+++++.. ....||..+ +.+..+.. +-.++-...+.|.+++|. ||+++.
T Consensus 89 sgrVsMah~~~sq~V~i~G~~-~gYrYdgat--~~l~~~~~-~~~~p~y~~g~v~Dv~~~-dGryVw 150 (469)
T PF11134_consen 89 SGRVSMAHSGGSQAVAINGKL-KGYRYDGAT--KTLSNWPT-DEGYPQYDLGDVVDVTRL-DGRYVW 150 (469)
T ss_pred CceEEEEeCCceeEEEEcccc-ceEEEechh--hHhhcCCC-cCcccccCccceeEEEec-cceEEE
Confidence 577899999888777775532 234555443 22222211 001111235678888886 777766
No 434
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=54.05 E-value=1.5e+02 Score=35.19 Aligned_cols=100 Identities=9% Similarity=0.078 Sum_probs=49.3
Q ss_pred EEEeeCCcEEEEEecCCceeeeeecccce---------e--cCCCCeEEEEEcCCC------CEEEEEe----------e
Q 001567 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK---------E--LGSGDAVCASIAPEQ------QILAVGT----------R 276 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~i~~w~~~~~~~---------~--~gh~~~v~va~spd~------~~lAsgs----------~ 276 (1052)
+++.|||+++++....+.++.++...... . .+..+...++++|++ ++|-+.. .
T Consensus 35 maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~ 114 (454)
T TIGR03606 35 LLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPN 114 (454)
T ss_pred EEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCccC
Confidence 45577887777655456666554322111 0 132333499999987 2333322 1
Q ss_pred CCeEEEEecCCCC-c---eeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEc
Q 001567 277 RGVVELYDLAESA-S---LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1052)
Q Consensus 277 Dg~V~vwd~~~~~-~---~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~ 327 (1052)
...|.-|.++... . ....+.. .+....|.+ ..|+|.|||++.++.++
T Consensus 115 ~~~I~R~~l~~~~~~l~~~~~Il~~--lP~~~~H~G--grI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 115 HTKIVRYTYDKSTQTLEKPVDLLAG--LPAGNDHNG--GRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CcEEEEEEecCCCCccccceEEEec--CCCCCCcCC--ceEEECCCCcEEEEECC
Confidence 2234445543211 1 1112221 222223654 45779999986665554
No 435
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.30 E-value=3.7e+02 Score=29.79 Aligned_cols=128 Identities=19% Similarity=0.250 Sum_probs=78.8
Q ss_pred cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEE
Q 001567 254 LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (1052)
Q Consensus 254 ~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~ 332 (1052)
.|....+ .+.|||+.+.|.+-.....-.|+= ++.|..++++...- -..--.|.|..+|++.++--+++.+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVEl-t~~GdlirtiPL~g-------~~DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVEL-TKEGDLIRTIPLTG-------FSDPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEE-ecCCceEEEecccc-------cCChhHeEEecCCEEEEEehhcceEE
Confidence 4555558 999999988877766666555554 44488888776521 11224588888999999988899999
Q ss_pred EEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeeeeeeEEecCCceEEEEecCCcccEEEEe
Q 001567 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFS 400 (1052)
Q Consensus 333 vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~s 400 (1052)
+..+.....+..+.. ..+.-....+. -.|-.-..|++.+..++..-+....+|+...
T Consensus 154 ~~~vd~~t~~~~~~~--------~~i~L~~~~k~---N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 154 LFTVDADTTVISAKV--------QKIPLGTTNKK---NKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred EEEEcCCccEEeccc--------eEEeccccCCC---CcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 998865533222211 01110000000 1112345699999999888766555565544
No 436
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=52.03 E-value=4.3e+02 Score=30.54 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=14.2
Q ss_pred EEEEEccCCCEEEE-EeCCceE-EEEc
Q 001567 456 QHVAASKDGMFLAV-AGLHGLI-LYDI 480 (1052)
Q Consensus 456 ~~va~SpdG~~lav-ag~dG~i-lwd~ 480 (1052)
....|||||++|+- +...|.. +|-+
T Consensus 354 Php~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ---EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred CCCccCCCCCEEEEECCCCCCccEEEE
Confidence 35899999998874 4556766 7754
No 437
>PHA02790 Kelch-like protein; Provisional
Probab=51.62 E-value=5e+02 Score=31.15 Aligned_cols=64 Identities=11% Similarity=0.170 Sum_probs=36.8
Q ss_pred ccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeC
Q 001567 461 SKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (1052)
Q Consensus 461 SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~elrly~~ 528 (1052)
.-+|+..++|| .. .||..+++|.........+ .........+.+.++|++........+..|+.
T Consensus 405 ~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r-~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 405 VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPR-DNPELIIVDNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCc-cccEEEEECCEEEEECCcCCCcccceEEEEEC
Confidence 44777777775 46 8999999999876543322 12222333455666665543222234556655
No 438
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.68 E-value=65 Score=34.20 Aligned_cols=73 Identities=11% Similarity=0.127 Sum_probs=45.2
Q ss_pred ceEEEEeeCCeEEEEE-cCCcEEEeecCCceeEEEEEecChhhhh---------hcCccceEEEcCCccEEEEEeCCcEE
Q 001567 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQ---------REGENLQAVWSPDTKLIAVVTSSLYL 91 (1052)
Q Consensus 22 ~~vv~fSpdg~llA~~-sd~~v~IW~~~~~~~~l~~~~r~~~sl~---------~~G~~~~v~wSPDg~~Lav~t~dg~l 91 (1052)
.+++.+..+|.+|.++ .++.+++||+.+....+.. -+...+- ....+..+..+.+|.-|++-+ +|..
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~--~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~ 89 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPP--VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDS 89 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCC--ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCE
Confidence 5777788888887777 4789999999633222111 0112211 223456778888887666544 5667
Q ss_pred EEEEEE
Q 001567 92 HIFKVQ 97 (1052)
Q Consensus 92 ~i~~l~ 97 (1052)
..|+.+
T Consensus 90 y~y~~~ 95 (219)
T PF07569_consen 90 YSYSPD 95 (219)
T ss_pred EEeccc
Confidence 777765
No 439
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=49.31 E-value=4.4e+02 Score=29.84 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=41.4
Q ss_pred CCCeEEEEEcC-------CCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC
Q 001567 256 SGDAVCASIAP-------EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (1052)
Q Consensus 256 h~~~v~va~sp-------d~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D 328 (1052)
|..+..+.|.. ++.+++.....+.|....++..++....-... .+..+.+..|++.|||.+.++-..+
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~r~~~v~~~pDG~Lyv~~d~~ 326 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL-----GGFGGRPRDVAQGPDGALYVSDDSD 326 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC-----TTSSS-EEEEEEETTSEEEEEE-TT
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc-----ccCCCCceEEEEcCCCeEEEEECCC
Confidence 44444666653 45567666666777777776522322111110 1244589999999999988888877
Q ss_pred CcE
Q 001567 329 RGL 331 (1052)
Q Consensus 329 g~v 331 (1052)
|.|
T Consensus 327 G~i 329 (331)
T PF07995_consen 327 GKI 329 (331)
T ss_dssp TTE
T ss_pred CeE
Confidence 776
No 440
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=49.16 E-value=62 Score=37.79 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=50.5
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEE---------C----CC-CCEEEE-E
Q 001567 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW---------T----PD-NSAFAV-G 325 (1052)
Q Consensus 261 ~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~---------S----pD-g~~Las-g 325 (1052)
+++.+|++++.|+...=|.|.++|+.. +..++.+++..- ++-+.+....= + +. ..+|+. +
T Consensus 312 ~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRd----Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 312 SICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRD----AQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCcc----ceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 899999999988866668999999987 776777766321 01111111000 0 01 123333 4
Q ss_pred EcCCcEEEEEcCCCeEEEEec
Q 001567 326 WKSRGLTVWSVSGCRLMSTIR 346 (1052)
Q Consensus 326 ~~Dg~v~vWd~~~~~l~~tl~ 346 (1052)
-.-|.|-||++..+..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 456899999998877665543
No 441
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=48.69 E-value=95 Score=32.90 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=40.2
Q ss_pred EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECC
Q 001567 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP 317 (1052)
Q Consensus 261 ~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~Sp 317 (1052)
.+++.-+|.+.++.-..|+|.-.|..+ ++.+.+++. .+..|+|++|--
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~eikl--------Pt~qitsccFgG 263 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLEIKL--------PTPQITSCCFGG 263 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCC-CcEEEEEEc--------CCCceEEEEecC
Confidence 455566888888888889999999988 888888888 688999999974
No 442
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.29 E-value=1.8e+02 Score=34.46 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=26.8
Q ss_pred CeeEEEECCCC---CEEEEEEcCCcEEEEEcCCCeEE
Q 001567 309 PVSCIAWTPDN---SAFAVGWKSRGLTVWSVSGCRLM 342 (1052)
Q Consensus 309 ~V~~l~~SpDg---~~Lasg~~Dg~v~vWd~~~~~l~ 342 (1052)
.+..++|+|+. ..|..-..|++++++|...-+.+
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 46778999975 57888888999999999765433
No 443
>PHA03098 kelch-like protein; Provisional
Probab=45.47 E-value=4.1e+02 Score=32.21 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=37.4
Q ss_pred EccCCCEEEEEeCCc--------eE-EEEccCCcEEEecCccceeeeEEEEEEEeCCEEEEEEEecCCCeEEEEEeeC
Q 001567 460 ASKDGMFLAVAGLHG--------LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (1052)
Q Consensus 460 ~SpdG~~lavag~dG--------~i-lwd~~s~~w~~f~~~~~e~~~~v~gl~W~~~~li~~~~~~~~~~~elrly~~ 528 (1052)
..-+|+..++||.++ .+ .||..+++|.........+ .........+...+.|+.........+.+|+.
T Consensus 434 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 434 IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-INASLCIFNNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-ccceEEEECCEEEEEcCCcCCcccceeEEEeC
Confidence 344777888887542 26 9999999999876433222 11112222344455554433222345666654
No 444
>PRK13684 Ycf48-like protein; Provisional
Probab=44.18 E-value=5.2e+02 Score=29.27 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=29.4
Q ss_pred eeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceEEEEccC-CcEEEe
Q 001567 438 KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQ-KKWRVF 488 (1052)
Q Consensus 438 ~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~ilwd~~s-~~w~~f 488 (1052)
.|+....|.. .....+..+++.++++.+ ++|.+|.++..... ..|+..
T Consensus 247 sW~~~~~~~~--~~~~~l~~v~~~~~~~~~-~~G~~G~v~~S~d~G~tW~~~ 295 (334)
T PRK13684 247 SWSKPIIPEI--TNGYGYLDLAYRTPGEIW-AGGGNGTLLVSKDGGKTWEKD 295 (334)
T ss_pred ccccccCCcc--ccccceeeEEEcCCCCEE-EEcCCCeEEEeCCCCCCCeEC
Confidence 4655444421 123457889999988755 46678877666554 457664
No 445
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=44.16 E-value=1.8e+02 Score=36.13 Aligned_cols=31 Identities=32% Similarity=0.412 Sum_probs=26.5
Q ss_pred ccceEEEcCCccEEEEEeCCcEEEEEEEEec
Q 001567 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (1052)
Q Consensus 69 ~~~~v~wSPDg~~Lav~t~dg~l~i~~l~~~ 99 (1052)
.+.+.+||.|-+.+++.|++..|.+++--++
T Consensus 114 GIvaa~wS~DE~~~cvvt~~r~il~~~k~fd 144 (1243)
T COG5290 114 GIVAASWSADEKTWCVVTSTREILLFDKYFD 144 (1243)
T ss_pred ceEEEeeccCCceEEEEEcCceEEEEecccc
Confidence 4578999999999999999999999886554
No 446
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=39.02 E-value=37 Score=29.32 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhhcccchhhHHhhhhccCCCchHHhhhcccceeeeccHHHHHHHH---hhhcc
Q 001567 978 VKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVCARLENFASGLELI---GQKVS 1038 (1052)
Q Consensus 978 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~l~~~---~~~~~ 1038 (1052)
...+++..||.||.+.+...|++..++ -+.+.--||+|++||-.+ |+||.
T Consensus 4 ~~~m~ee~Ar~lL~e~E~~tm~yyl~e-----------Y~~~~~tVealV~aL~elLnt~~K~s 56 (81)
T cd07357 4 TRSMVEEQARHLLSENERATLSYYLDE-----------YRSGHISVDALVMALFELLNTHEKFS 56 (81)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHH-----------HHcCCCCHHHHHHHHHHHhccHHHHH
Confidence 567999999999999988887764432 356666799999998766 66654
No 447
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=38.79 E-value=6e+02 Score=28.42 Aligned_cols=119 Identities=11% Similarity=0.176 Sum_probs=60.4
Q ss_pred CCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEE
Q 001567 257 GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (1052)
Q Consensus 257 ~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd 335 (1052)
...+ .+..++||+++|+++.-....-|+-.. ........ .-...|.+|.|+||+...+.+ ..|.++.=+
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~--~~w~~~~r-------~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ--TTWQPHNR-------NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE---------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCC--ccceEEcc-------CccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 3555 788899999999987666666777432 11221111 146789999999998876655 656666655
Q ss_pred -cCCCeEEEE--ecc-cccCceeeeeEcCCCCCCccceeeee-eeeEEecCCceEEEEe
Q 001567 336 -VSGCRLMST--IRQ-ISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIE 389 (1052)
Q Consensus 336 -~~~~~l~~t--l~~-~~~~~v~s~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~ 389 (1052)
......... ... -..-.+..+++.+++ +.+++|. -.++-+.++|+-|...
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~----~~wa~gg~G~l~~S~DgGktW~~~ 268 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPN----EIWAVGGSGTLLVSTDGGKTWQKD 268 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS-----EEEEESTT-EEEESSTTSS-EE-
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCC----CEEEEeCCccEEEeCCCCccceEC
Confidence 122222111 111 001236677888776 7777665 3455566666666654
No 448
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=37.36 E-value=1.2e+03 Score=31.39 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=18.1
Q ss_pred ceEEEcCCccEEEEEeCCcEE-EEEEEEecC
Q 001567 71 LQAVWSPDTKLIAVVTSSLYL-HIFKVQITE 100 (1052)
Q Consensus 71 ~~v~wSPDg~~Lav~t~dg~l-~i~~l~~~~ 100 (1052)
.+++++|||-.-++-|....| ++=.+.++.
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg 626 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKLSTDG 626 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEeccCc
Confidence 589999999766665544333 334444333
No 449
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=37.02 E-value=1.7e+02 Score=29.55 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=27.1
Q ss_pred CCCeeEEEECCC------CCEEEEEEcCCcEEEEEcCCC
Q 001567 307 TGPVSCIAWTPD------NSAFAVGWKSRGLTVWSVSGC 339 (1052)
Q Consensus 307 ~g~V~~l~~SpD------g~~Lasg~~Dg~v~vWd~~~~ 339 (1052)
.+.|..++|||- +.+||+...++.|.||...+.
T Consensus 85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 357999999994 348899999999999987653
No 450
>PRK10115 protease 2; Provisional
Probab=36.58 E-value=9.8e+02 Score=30.22 Aligned_cols=105 Identities=7% Similarity=-0.036 Sum_probs=58.6
Q ss_pred EEEeeCCcEEEEEecCC-----ceeeeeecccceecC-CCCe-EEEEEcCCCCEEEEEeeC------CeEEEEecCCCC-
Q 001567 224 FVLYSNGQLMSCSVSKK-----GLKLAEFIKIDKELG-SGDA-VCASIAPEQQILAVGTRR------GVVELYDLAESA- 289 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d~-----~i~~w~~~~~~~~~g-h~~~-v~va~spd~~~lAsgs~D------g~V~vwd~~~~~- 289 (1052)
+.++|||+.++.+.+.+ ++.+-+..++..+.. ..+. ..++|++|++.|.....+ ..|..+++.+..
T Consensus 132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~ 211 (686)
T PRK10115 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS 211 (686)
T ss_pred EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh
Confidence 45689999888776543 344555554432211 1111 268999999877766543 367778887621
Q ss_pred ceeEEEEeecCCCCCCCCCCee-EEEECCCCCEEEEEEcC---CcEEEEEc
Q 001567 290 SLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKS---RGLTVWSV 336 (1052)
Q Consensus 290 ~~~~~l~~~~~~~~~~h~g~V~-~l~~SpDg~~Lasg~~D---g~v~vWd~ 336 (1052)
+....+.. ..+... .+..+.|+++++..+.+ +.+.+++.
T Consensus 212 ~d~lv~~e--------~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 212 QDELVYEE--------KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred HCeEEEee--------CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 22233333 222333 33334488876665443 46778874
No 451
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=36.46 E-value=6.3e+02 Score=30.05 Aligned_cols=63 Identities=13% Similarity=0.055 Sum_probs=38.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCC
Q 001567 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN 319 (1052)
Q Consensus 255 gh~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg 319 (1052)
+-..+..++|.||++++++--..|.|++++-.. +.... +....--....-.+....|+++||-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~-~~~~~-~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPET-GEVKV-VFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCC-Cceee-eecCCceeccCCCCceeeEEECCCc
Confidence 335566899999999888765579999987543 22111 1110000011125778999999984
No 452
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=35.55 E-value=1.4e+02 Score=21.66 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=23.0
Q ss_pred CCCCEEEEEE-cCCcEEEEEcCCCeEEEEecc
Q 001567 317 PDNSAFAVGW-KSRGLTVWSVSGCRLMSTIRQ 347 (1052)
Q Consensus 317 pDg~~Lasg~-~Dg~v~vWd~~~~~l~~tl~~ 347 (1052)
|||+.|.++. .++.|.++|..++....++.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 6788666654 578999999988877766553
No 453
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=35.54 E-value=1.1e+02 Score=32.20 Aligned_cols=45 Identities=22% Similarity=0.280 Sum_probs=34.2
Q ss_pred eeCCeEEEEecCCC-CceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcC
Q 001567 275 TRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (1052)
Q Consensus 275 s~Dg~V~vwd~~~~-~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~D 328 (1052)
...+.|.+|++... .....++.. -|.|..+.++.-|.+|++--++
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~T---------v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFST---------VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcc---------hhheeEEEeccccceEEEEEee
Confidence 56678999999842 344555553 5889999999999999986554
No 454
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=35.05 E-value=1.3e+02 Score=24.35 Aligned_cols=60 Identities=13% Similarity=0.003 Sum_probs=46.9
Q ss_pred HHHHhcCcHhHHhhhhhhhhhccCcchhHHHHHHHHHHHHhcccHhHHHHHHHHhhhcCcCc
Q 001567 872 EECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLLRSGREY 933 (1052)
Q Consensus 872 ~~cl~~~~l~~aa~yLiv~~~~e~~~~~~~~~~~Ll~~al~~~~w~l~~eL~RFl~~~~~~~ 933 (1052)
...++.|+++.|...+--+....+. .......|.......++|+-|.+..+=+..++|++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3467899999999998877766655 46667788888899999999999998877777754
No 455
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=34.92 E-value=1.4e+02 Score=36.53 Aligned_cols=36 Identities=14% Similarity=0.335 Sum_probs=28.4
Q ss_pred EEEEcC----CCCEEEEEeeCCeEEEEecCCCCceeEEEEe
Q 001567 261 CASIAP----EQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1052)
Q Consensus 261 ~va~sp----d~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~ 297 (1052)
.+++++ +..++++-+.|+++|+||+.+ +.++.+...
T Consensus 219 ~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t-~~~~~~~~~ 258 (547)
T PF11715_consen 219 SLAVSSSEINDDTFLFTLSRDHTLRIWSLET-GQCLATIDL 258 (547)
T ss_dssp EEEE-----ETTTEEEEEETTSEEEEEETTT-TCEEEEEET
T ss_pred eEEEecceeCCCCEEEEEeCCCeEEEEECCC-CeEEEEecc
Confidence 666666 778999999999999999998 777766554
No 456
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=34.13 E-value=5.9e+02 Score=26.91 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=30.4
Q ss_pred CEEEEEEcCCcEEEEEcC--CCeEEEEecccccCceeeeeEcCCCCCCcccee
Q 001567 320 SAFAVGWKSRGLTVWSVS--GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM 370 (1052)
Q Consensus 320 ~~Lasg~~Dg~v~vWd~~--~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~ 370 (1052)
..|..+...+.|-+|++. ...+.+++..- +.|..+.++..| ++++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv--~~V~~l~y~~~G----DYlv 75 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV--GRVLQLVYSEAG----DYLV 75 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch--hheeEEEecccc----ceEE
Confidence 344333444789999987 56677777653 567788887777 5554
No 457
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=33.54 E-value=5.3e+02 Score=30.30 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=34.7
Q ss_pred CCeEEEEEeeCCCCCCcceeEEeecCCccEEEEeeCCEEEEEEcCCeEEEEEEE
Q 001567 518 SNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (1052)
Q Consensus 518 ~~~~elrly~~~~ld~~~~l~~~~~~~~~~~~s~~~~~llv~~~d~~i~l~~~~ 571 (1052)
+-+..|.+|..+...-...+-..-+|+ |+.+.+..|.+++++++..+.-|++.
T Consensus 152 S~DG~L~~feqe~~~f~~~lp~~llPg-Pl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 152 SMDGSLSFFEQESFAFSRFLPDFLLPG-PLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred ecCceEEEEeCCcEEEEEEcCCCCCCc-CeEEeecCCEEEEecCceeEEEecHH
Confidence 455778888775211111111122344 78888888999998888899999885
No 458
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=33.15 E-value=8.2e+02 Score=28.32 Aligned_cols=89 Identities=11% Similarity=0.134 Sum_probs=42.8
Q ss_pred EeeCCcEEEEEec-CCceeee--eeccccee--cCC-CCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEee
Q 001567 226 LYSNGQLMSCSVS-KKGLKLA--EFIKIDKE--LGS-GDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (1052)
Q Consensus 226 ~s~dG~~~~~~~~-d~~i~~w--~~~~~~~~--~gh-~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~ 298 (1052)
+++||+.++.+++ ++.-+++ |+.+++.. ... .+.. ...++|+.+.+.--..+.+|+--|+++ .+.......
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T-~e~~~vy~~- 120 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT-LEERVVYEV- 120 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE--
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc-CcEEEEEEC-
Confidence 4788976655554 4443433 44444332 221 1222 456678888876655556888888876 443333333
Q ss_pred cCCCCCCCCCCeeEEEEC--CCCCEEE
Q 001567 299 DWGYSMDDTGPVSCIAWT--PDNSAFA 323 (1052)
Q Consensus 299 ~~~~~~~h~g~V~~l~~S--pDg~~La 323 (1052)
..+.+-...|+ .|++.++
T Consensus 121 -------p~~~~g~gt~v~n~d~t~~~ 140 (386)
T PF14583_consen 121 -------PDDWKGYGTWVANSDCTKLV 140 (386)
T ss_dssp --------TTEEEEEEEEE-TTSSEEE
T ss_pred -------CcccccccceeeCCCccEEE
Confidence 45556567775 3555544
No 459
>PHA02713 hypothetical protein; Provisional
Probab=32.58 E-value=1e+03 Score=29.19 Aligned_cols=64 Identities=11% Similarity=0.171 Sum_probs=38.3
Q ss_pred EccCCCEEEEEeCCc------eE-EEEccC-CcEEEecCccceeeeEEEEEEEe-CCEEEEEEEecCCCeEEEEEeeC
Q 001567 460 ASKDGMFLAVAGLHG------LI-LYDIRQ-KKWRVFGDITQEQKIQSKGLLWL-GKIIVVCNYIDSSNTYELLFYPR 528 (1052)
Q Consensus 460 ~SpdG~~lavag~dG------~i-lwd~~s-~~w~~f~~~~~e~~~~v~gl~W~-~~~li~~~~~~~~~~~elrly~~ 528 (1052)
..-+|+..++||.++ .+ .||..+ ++|.........+ ...+++-. +.+.++|+++. ...+..|+.
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r--~~~~~~~~~~~iyv~Gg~~~---~~~~e~yd~ 532 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL--SALHTILHDNTIMMLHCYES---YMLQDTFNV 532 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc--ccceeEEECCEEEEEeeecc---eeehhhcCc
Confidence 344788888888652 46 899999 8999876543332 23344444 44556666643 123445544
No 460
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.38 E-value=1.3e+03 Score=30.50 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=24.7
Q ss_pred CCCCCEEEEEEcCCcEEEEEcCCCeE
Q 001567 316 TPDNSAFAVGWKSRGLTVWSVSGCRL 341 (1052)
Q Consensus 316 SpDg~~Lasg~~Dg~v~vWd~~~~~l 341 (1052)
+++|..++++..||.+..||+..+.+
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 89999999999999999999999876
No 461
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.37 E-value=5.3e+02 Score=34.06 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=32.4
Q ss_pred ccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEe
Q 001567 447 SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (1052)
Q Consensus 447 ~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f 488 (1052)
.+..+++++.....+++|..++++-.||.. .||...++-+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~~~~ 271 (993)
T KOG1983|consen 229 KYVQSAYLPNGQLESRDGSHFVSYHTDGSYAFWDVSSGKLQIA 271 (993)
T ss_pred ccchhhcccccccCccCCceEEEEEecCCEEeeecCCCceeec
Confidence 344555665555559999999999999999 999999865443
No 462
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=31.20 E-value=2.3e+02 Score=33.55 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=69.1
Q ss_pred CchHHHHHHHHHhhccccccccccccccCCccccchhhhHHHHHHHHHccchhHHHHhhhcccccccchHHhHhccCChH
Q 001567 789 HFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRST 868 (1052)
Q Consensus 789 ~f~~~LE~lLh~vle~e~~~~~~~~~~~~i~~~~~~~~ll~~v~~fi~~~~~~l~ivv~caRKtE~~~W~~lF~~~g~P~ 868 (1052)
.|..-+.-||.-.+-+-. .+|| ++...+.+||++-|.+. ....+=..++
T Consensus 156 ~y~~L~~~Ll~p~lWe~~---------gniP------alvrLL~a~i~k~~~~i---------~~~~~l~~iL------- 204 (435)
T PF03378_consen 156 AYKQLFPPLLSPALWERR---------GNIP------ALVRLLQAYIKKDPSFI---------VANNQLEPIL------- 204 (435)
T ss_dssp TTGGGHHHHTSGGGGGST---------TTHH------HHHHHHHHHHHHHGGG-------------S-CHHHH-------
T ss_pred HHHHHHHHHcCcchhccC---------CCcC------cHHHHHHHHHHhCchhh---------cchhhHHHHH-------
Confidence 677777777776654322 1366 77777778888777654 1112222333
Q ss_pred HHHHHHHhcCcHhHHhhhhh--hhhhccCcc---hhHHHHHHHHHHHHhcccHhHHHHHHHHhhhc
Q 001567 869 ELFEECFQRRWYRTAACYIL--VIAKLEGPA---VSQYSALRLLQATLDECLYELAGELVRFLLRS 929 (1052)
Q Consensus 869 ~Lf~~cl~~~~l~~aa~yLi--v~~~~e~~~---~~~~~~~~Ll~~al~~~~w~l~~eL~RFl~~~ 929 (1052)
..|++||..+..+.-|=+|+ |+.++..+. .-.+.+.-|+...-..+-....+.+++|+..+
T Consensus 205 gvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 205 GVFQKLIASKANDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 34999999999888888875 566666544 23555666666666678888999999997753
No 463
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.99 E-value=2.8e+02 Score=36.66 Aligned_cols=112 Identities=22% Similarity=0.420 Sum_probs=58.7
Q ss_pred EEcCCcEEEeecCCceeEEEEEecChhhhhhcCccc--eEEEcCCccEEEEEeCCcEEEEEEEEecCceeecCCCCCCCc
Q 001567 36 IASPCHIELWSSSQHKVRLGKYKRDSESVQREGENL--QAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGL 113 (1052)
Q Consensus 36 ~~sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~--~v~wSPDg~~Lav~t~dg~l~i~~l~~~~~~~~~~~~~~~~~ 113 (1052)
..-|+.+.+|+.++ ......+......+-+-|-+. .=.|-|+=+++.+.++--.+.|+-+..+....-. ..
T Consensus 95 iTiDn~L~lWny~~-~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~------~~ 167 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYES-DNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL------SI 167 (1311)
T ss_pred EEeCCeEEEEEcCC-CCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc------cc
Confidence 34588899999973 333443322222211111000 0124445566666666667888888765421100 00
Q ss_pred eeeeEeeeeccccccccccceEEEEe-ecCCeEEEEecCCcEEEEeccCc
Q 001567 114 FFIKISLVLNEQLPFAEKGLSVSNIV-SDNKHMLLGLSDGSLYSISWKGE 162 (1052)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~v~~i~-~d~~~llv~t~dg~v~~~~wd~~ 162 (1052)
... ...+..+...|.|+. -++.+++.++.||.++-+.+..+
T Consensus 168 f~~--------~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~ 209 (1311)
T KOG1900|consen 168 FNT--------SFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAE 209 (1311)
T ss_pred ccc--------ceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEecc
Confidence 001 111233345688887 45567888999998876665544
No 464
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=30.21 E-value=85 Score=23.66 Aligned_cols=31 Identities=19% Similarity=0.477 Sum_probs=24.0
Q ss_pred EEccCCCEEEEEeCCc------eE-EEEccCCcEEEec
Q 001567 459 AASKDGMFLAVAGLHG------LI-LYDIRQKKWRVFG 489 (1052)
Q Consensus 459 a~SpdG~~lavag~dG------~i-lwd~~s~~w~~f~ 489 (1052)
+..-+++..++||.++ .+ .||..+++|+...
T Consensus 7 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 7 AVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred EEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 3444788888898876 56 8999999998753
No 465
>PF13964 Kelch_6: Kelch motif
Probab=30.16 E-value=62 Score=25.00 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=24.1
Q ss_pred EEccCCCEEEEEeCCc------eE-EEEccCCcEEEecC
Q 001567 459 AASKDGMFLAVAGLHG------LI-LYDIRQKKWRVFGD 490 (1052)
Q Consensus 459 a~SpdG~~lavag~dG------~i-lwd~~s~~w~~f~~ 490 (1052)
+..-+|+..+.||.++ .+ +||..+++|.....
T Consensus 7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 45 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP 45 (50)
T ss_pred EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC
Confidence 3445778888888766 45 89999999998654
No 466
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.93 E-value=1.8e+02 Score=36.20 Aligned_cols=135 Identities=20% Similarity=0.233 Sum_probs=78.0
Q ss_pred CCCCchHHHHHHHHHhhccccccc-cccccccCCccccchhhhHH-HHHHHHH----c----cchhHHHHhhhccccccc
Q 001567 786 EKPHFSHCLEWLLFTVFDAEISRQ-NINKNQISIPKRAASFSLLE-KTCNFIR----N----FPEYLNVVVSVARKTDGR 855 (1052)
Q Consensus 786 ~l~~f~~~LE~lLh~vle~e~~~~-~~~~~~~~i~~~~~~~~ll~-~v~~fi~----~----~~~~l~ivv~caRKtE~~ 855 (1052)
.+.||.-+.+=|.+.. ..=..+. .|..+-..|+| +.|+ +++++|+ . ...+-+|..+.|||||..
T Consensus 213 ~l~~fr~l~~~lV~iL-k~l~~~~yspeydv~gi~d-----PFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdss 286 (866)
T KOG1062|consen 213 ALSYFRDLVPSLVKIL-KQLTNSGYSPEYDVHGISD-----PFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSS 286 (866)
T ss_pred HHHHHHHHHHHHHHHH-HHHhcCCCCCccCccCCCc-----hHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccccc
Confidence 4677887766665542 1111111 12233335665 6665 4555543 2 335789999999999987
Q ss_pred chHHhHhccCChH------HHHHHHHhcCcHhHHhhhh-----------------------------------hhhhhcc
Q 001567 856 HWADLFSAAGRST------ELFEECFQRRWYRTAACYI-----------------------------------LVIAKLE 894 (1052)
Q Consensus 856 ~W~~lF~~~g~P~------~Lf~~cl~~~~l~~aa~yL-----------------------------------iv~~~~e 894 (1052)
..+|+.. ..|..--+.+-...|++.| -|+.=++
T Consensus 287 ------kN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~ 360 (866)
T KOG1062|consen 287 ------KNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLK 360 (866)
T ss_pred ------ccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhc
Confidence 3444321 2221112233345555544 1223344
Q ss_pred Ccchh-HHHHHHHHHHHHhcccH-hHHHHHHHHhhhcCcC
Q 001567 895 GPAVS-QYSALRLLQATLDECLY-ELAGELVRFLLRSGRE 932 (1052)
Q Consensus 895 ~~~~~-~~~~~~Ll~~al~~~~w-~l~~eL~RFl~~~~~~ 932 (1052)
.+|++ +..|++|+-+.++..+. .|.+||+-||...|++
T Consensus 361 DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~ 400 (866)
T KOG1062|consen 361 DPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDED 400 (866)
T ss_pred CCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHH
Confidence 55544 67788888888777554 6999999999998765
No 467
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=29.87 E-value=1.3e+03 Score=29.69 Aligned_cols=77 Identities=16% Similarity=0.082 Sum_probs=39.8
Q ss_pred cEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee--cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecC
Q 001567 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLA 286 (1052)
Q Consensus 210 ~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~--~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~ 286 (1052)
.+..+.........+.++.+|+.+.....+-...-+.. .+... ..-.+.| ++..-.+...++..+..|.++...++
T Consensus 640 ~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~-~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~ 718 (800)
T TIGR01063 640 ELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAA-RGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIE 718 (800)
T ss_pred EEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCC-CCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHH
Confidence 34444444444567788889988776554321111111 01000 1122334 33333345567888889988887765
Q ss_pred C
Q 001567 287 E 287 (1052)
Q Consensus 287 ~ 287 (1052)
.
T Consensus 719 e 719 (800)
T TIGR01063 719 E 719 (800)
T ss_pred H
Confidence 4
No 468
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=29.16 E-value=8.7e+02 Score=27.34 Aligned_cols=65 Identities=12% Similarity=0.210 Sum_probs=40.6
Q ss_pred EEEEcCCCCEEEEEeeC------CeEEEEecCCCCceeEEEEee-cCC------CCCCCCCCeeEEEECCCCCEEEEEEc
Q 001567 261 CASIAPEQQILAVGTRR------GVVELYDLAESASLIRTVSLY-DWG------YSMDDTGPVSCIAWTPDNSAFAVGWK 327 (1052)
Q Consensus 261 ~va~spd~~~lAsgs~D------g~V~vwd~~~~~~~~~~l~~~-~~~------~~~~h~g~V~~l~~SpDg~~Lasg~~ 327 (1052)
.+++.+++.++++-=.+ -.|.-++.+ +..+..+... .+. .........-.|+++|||+.|.++-+
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 77777888877775555 567666654 5554444221 110 01124567889999999997766655
No 469
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=28.86 E-value=1.6e+03 Score=30.31 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=17.1
Q ss_pred CCCCCCeeEEEECCCCCEEEEE
Q 001567 304 MDDTGPVSCIAWTPDNSAFAVG 325 (1052)
Q Consensus 304 ~~h~g~V~~l~~SpDg~~Lasg 325 (1052)
.+|-....++|.||||...++-
T Consensus 658 ~A~lnsp~alaVsPdg~v~IAD 679 (1899)
T KOG4659|consen 658 QAKLNSPYALAVSPDGDVIIAD 679 (1899)
T ss_pred ccccCCcceEEECCCCcEEEec
Confidence 3566778999999999876653
No 470
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=28.82 E-value=2.6e+02 Score=26.55 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHcc---chhHHHHhhhcccccccchHHhHhccCChHHHHHHHHhcCcHhHH------hhhhhhhhhccCc
Q 001567 826 SLLEKTCNFIRNF---PEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTA------ACYILVIAKLEGP 896 (1052)
Q Consensus 826 ~ll~~v~~fi~~~---~~~l~ivv~caRKtE~~~W~~lF~~~g~P~~Lf~~cl~~~~l~~a------a~yLiv~~~~e~~ 896 (1052)
.++..+++.-.+. +...+++..++.+..-+.|...++++ .|++-++.+|.-+-. ...+--++++...
T Consensus 22 ~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL----~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~ 97 (125)
T PF01417_consen 22 KLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKAL----TLLEYLLKNGSERFVDELRDHIDIIRELQDFQYV 97 (125)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHH----HHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---B
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHH----HHHHHHHHHCCHHHHHHHHHHHHHHhhcceeecc
Confidence 6777777665333 34455555555456999999999984 677888887776332 3334444555332
Q ss_pred c--------hhHHHHHHHHHHHHh
Q 001567 897 A--------VSQYSALRLLQATLD 912 (1052)
Q Consensus 897 ~--------~~~~~~~~Ll~~al~ 912 (1052)
+ ..|+.|.+|++...|
T Consensus 98 d~~g~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 98 DPKGKDQGQNVREKAKEILELLND 121 (125)
T ss_dssp BTTSTBHHHHHHHHHHHHHHHHTS
T ss_pred CCCCccHHHHHHHHHHHHHHHhCC
Confidence 2 146666666655444
No 471
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=28.21 E-value=3.4e+02 Score=30.66 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=40.5
Q ss_pred cccchHHhHhccC---Ch---HHHHHHHHhcCcHhHHhhhhhhhhhccCcchhHHHHHHHHHHHHhcccHhHHHHHH
Q 001567 853 DGRHWADLFSAAG---RS---TELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELV 923 (1052)
Q Consensus 853 E~~~W~~lF~~~g---~P---~~Lf~~cl~~~~l~~aa~yLiv~~~~e~~~~~~~~~~~Ll~~al~~~~w~l~~eL~ 923 (1052)
+.+.|..|..-.+ +| .-+++.|++.|+-+.|..|+-=+.. -+-.++-+..|+|.-|.+.+
T Consensus 220 ~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~-----------~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 220 ENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYIPKIPD-----------EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred hcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHhCCh-----------HHHHHHHHHCCCHHHHHHHH
Confidence 4577888877665 55 4789999999999999999875432 11223335556666665554
No 472
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=27.80 E-value=8.9e+02 Score=27.07 Aligned_cols=249 Identities=16% Similarity=0.158 Sum_probs=97.9
Q ss_pred CCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeecccceecCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEec
Q 001567 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDL 285 (1052)
Q Consensus 207 ~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~ 285 (1052)
....+.+|.|.....++++ -..|.++-+ .|+. +-|+......-..-.-.. .++|+.+ ...++| ..|. ++..
T Consensus 15 t~~~l~dV~F~d~~~G~~V-G~~g~il~T--~DGG-~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g~--ll~T 86 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAV-GAYGTILKT--TDGG-KTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPGL--LLHT 86 (302)
T ss_dssp -SS-EEEEEESSSS-EEEE-ETTTEEEEE--SSTT-SS-EE-----S-----EEEEEEEETT-EEEEEE-ETTE--EEEE
T ss_pred CCCceEEEEEecCCEEEEE-ecCCEEEEE--CCCC-ccccccccCCCccceeeEEEEEecCC-ceEEEc-CCce--EEEe
Confidence 4457888888755555554 345544443 2322 124432211100001123 6777654 344554 4553 3444
Q ss_pred CCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCC
Q 001567 286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK 365 (1052)
Q Consensus 286 ~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~ 365 (1052)
.+.+.....+.... .-.+....+....++...+++ ..|.| .-+..+++-...+.......+..+..++++
T Consensus 87 ~DgG~tW~~v~l~~-----~lpgs~~~i~~l~~~~~~l~~-~~G~i-y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG--- 156 (302)
T PF14870_consen 87 TDGGKTWERVPLSS-----KLPGSPFGITALGDGSAELAG-DRGAI-YRTTDGGKTWQAVVSETSGSINDITRSSDG--- 156 (302)
T ss_dssp SSTTSS-EE----T-----T-SS-EEEEEEEETTEEEEEE-TT--E-EEESSTTSSEEEEE-S----EEEEEE-TTS---
T ss_pred cCCCCCcEEeecCC-----CCCCCeeEEEEcCCCcEEEEc-CCCcE-EEeCCCCCCeeEcccCCcceeEeEEECCCC---
Confidence 44365555443210 012344445444555444443 33332 334455554444433334567777777887
Q ss_pred ccceeeee---eeeEEecCCceEEEEecCCcccEEEEeccceeeeeccCCceeeeEeeecCceEEEEecCCcchheeeee
Q 001567 366 YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (1052)
Q Consensus 366 ~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w~~~ 442 (1052)
..++.+. -.+.|+.....-.........+|-.+.| +..-.+|.+..+.. +.... .......|...
T Consensus 157 -~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf---------~~~~~lw~~~~Gg~-~~~s~-~~~~~~~w~~~ 224 (302)
T PF14870_consen 157 -RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGF---------SPDGNLWMLARGGQ-IQFSD-DPDDGETWSEP 224 (302)
T ss_dssp --EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE----------TTS-EEEEETTTE-EEEEE--TTEEEEE---
T ss_pred -cEEEEECcccEEEEecCCCccceEEccCccceehhcee---------cCCCCEEEEeCCcE-EEEcc-CCCCccccccc
Confidence 6665444 3345654322111111122334433322 22234455543332 33332 11112235443
Q ss_pred ccCcccccCCCcEEEEEEccCCCEEEEEeCCceEEEEccCCc-EEEe
Q 001567 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKK-WRVF 488 (1052)
Q Consensus 443 ~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~ilwd~~s~~-w~~f 488 (1052)
..|.. ...+-+..+++.+++...|+| ..|.++.+...|+ |+.-
T Consensus 225 ~~~~~--~~~~~~ld~a~~~~~~~wa~g-g~G~l~~S~DgGktW~~~ 268 (302)
T PF14870_consen 225 IIPIK--TNGYGILDLAYRPPNEIWAVG-GSGTLLVSTDGGKTWQKD 268 (302)
T ss_dssp B-TTS--S--S-EEEEEESSSS-EEEEE-STT-EEEESSTTSS-EE-
T ss_pred cCCcc--cCceeeEEEEecCCCCEEEEe-CCccEEEeCCCCccceEC
Confidence 33321 233458899999888777755 5667778877654 7754
No 473
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=27.23 E-value=75 Score=24.32 Aligned_cols=28 Identities=18% Similarity=0.458 Sum_probs=18.2
Q ss_pred ccCCCEEEEEeCCc------eE-EEEccCCcEEEe
Q 001567 461 SKDGMFLAVAGLHG------LI-LYDIRQKKWRVF 488 (1052)
Q Consensus 461 SpdG~~lavag~dG------~i-lwd~~s~~w~~f 488 (1052)
.++++.++.||.+. .+ +||+.+++|...
T Consensus 10 ~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 10 IGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp E-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 35678888888754 35 889999999865
No 474
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=26.68 E-value=6e+02 Score=28.10 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=40.4
Q ss_pred CeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEEE------cCCcEEEEEcCCCeEEEEecc
Q 001567 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW------KSRGLTVWSVSGCRLMSTIRQ 347 (1052)
Q Consensus 278 g~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg~------~Dg~v~vWd~~~~~l~~tl~~ 347 (1052)
..|.+||.+. .+ ...+.. +-.|.|++|.|..+.+.+++|. ....+..||..+.. ..++.+
T Consensus 16 ~~lC~yd~~~-~q-W~~~g~-------~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~ 81 (281)
T PF12768_consen 16 PGLCLYDTDN-SQ-WSSPGN-------GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGG 81 (281)
T ss_pred CEEEEEECCC-CE-eecCCC-------CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCC
Confidence 4588999875 33 222221 1468999999997778888875 35678999988764 444443
No 475
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=25.49 E-value=2.6e+02 Score=20.13 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=20.3
Q ss_pred CCCCEEEE-EeeCCeEEEEecCCCCceeEEEEe
Q 001567 266 PEQQILAV-GTRRGVVELYDLAESASLIRTVSL 297 (1052)
Q Consensus 266 pd~~~lAs-gs~Dg~V~vwd~~~~~~~~~~l~~ 297 (1052)
|+++.|.+ ...+++|.++|..+ ...+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEEC
Confidence 56665544 44578999999876 655555543
No 476
>PRK05560 DNA gyrase subunit A; Validated
Probab=25.49 E-value=1.6e+03 Score=29.08 Aligned_cols=239 Identities=10% Similarity=-0.029 Sum_probs=0.0
Q ss_pred CCCCceEEEEeeCCeEEEEEcCCcEEEeecCCceeEEEEEecChhhhhhcCccceEEEcC---CccEEEEEeCCcEEEEE
Q 001567 18 CPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP---DTKLIAVVTSSLYLHIF 94 (1052)
Q Consensus 18 ~~~~~~vv~fSpdg~llA~~sd~~v~IW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wSP---Dg~~Lav~t~dg~l~i~ 94 (1052)
|.....++.|+..|+.+..-.. .+-.=.....++++..+.+-... ..+..+.--+ +...+++.|.+|+++--
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~-~iP~~~~~~~G~~i~~ll~L~~~----E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi 619 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVY-EIPEASRTARGRPIVNLLPLEPG----EKITAILPVREFDDDKYLFFATKNGTVKKT 619 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhh-hCcCCCcCCCCeEHHHhcCCCCC----ceEEEEEeccCCCCCCEEEEEeCCCEEEEE
Q ss_pred EEEecCceeecCCCCCCCceeeeEeeeeccccccccccceEEEEeecCCeEEEEecCCcEEEEeccCccccceeecccCC
Q 001567 95 KVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSN 174 (1052)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~llv~t~dg~v~~~~wd~~~~~~~~l~~~~~ 174 (1052)
.+..-...... ....-..-.++...-...+...+.+++.|+.|.+..+.-..-.....
T Consensus 620 ~l~~~~~~~r~---------------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr------- 677 (805)
T PRK05560 620 SLSEFSNIRSN---------------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGR------- 677 (805)
T ss_pred EhHHhhhcccC---------------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCc-------
Q ss_pred CCccceeecccCCCcceeecCCCCeeeccccCCCccEEEEEecCCcceEEEEeeCCcEEEEEecCCceeeeeeccccee-
Q 001567 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE- 253 (1052)
Q Consensus 175 ~~~~i~~i~~s~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~- 253 (1052)
...+..+..+.=......++.+.++++.++..+..|.++..........
T Consensus 678 ------------------------------~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~ 727 (805)
T PRK05560 678 ------------------------------TARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQG 727 (805)
T ss_pred ------------------------------ccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccC
Q ss_pred -----------cCCCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCE
Q 001567 254 -----------LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA 321 (1052)
Q Consensus 254 -----------~gh~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~ 321 (1052)
....+.+ .+........++..+.+|.+..+++++ ++.... .+.+|..+....++..
T Consensus 728 R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~e----I~~~gR--------~a~GVk~I~L~~~D~V 795 (805)
T PRK05560 728 RGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSE----ISITGR--------NTQGVRLIRLDEGDKV 795 (805)
T ss_pred CCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHH----CCcccc--------CCCCeeeEecCCCCEE
Q ss_pred EEEE
Q 001567 322 FAVG 325 (1052)
Q Consensus 322 Lasg 325 (1052)
+.+.
T Consensus 796 ~~~~ 799 (805)
T PRK05560 796 VSVA 799 (805)
T ss_pred EEEE
No 477
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=24.57 E-value=1.5e+02 Score=24.11 Aligned_cols=57 Identities=21% Similarity=0.189 Sum_probs=42.9
Q ss_pred HHhcCcHhHHhhhhhhhhhccCcchhHHHHHHHHHHHHhcccHhHHHHHHHHhhhcCcC
Q 001567 874 CFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLLRSGRE 932 (1052)
Q Consensus 874 cl~~~~l~~aa~yLiv~~~~e~~~~~~~~~~~Ll~~al~~~~w~l~~eL~RFl~~~~~~ 932 (1052)
.++.|+++.|..++-=+...++.. ....+.|.+..+..|+++-|.+++.=+...+|+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN--PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS--HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 367889999999887766666653 455667888899999999999998766665554
No 478
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=24.12 E-value=62 Score=28.60 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=26.2
Q ss_pred EEEEccCCCEEEEEeCCceEEEEccCCcEEEe
Q 001567 457 HVAASKDGMFLAVAGLHGLILYDIRQKKWRVF 488 (1052)
Q Consensus 457 ~va~SpdG~~lavag~dG~ilwd~~s~~w~~f 488 (1052)
++.++-.|.-+|+||.+|-.+|-+.+++-+.+
T Consensus 2 ~v~~~~~g~~lAiGG~~g~~~Wfvtt~~v~~~ 33 (86)
T PF11090_consen 2 CVTIEHKGRPLAIGGNNGGCLWFVTTNKVKSL 33 (86)
T ss_pred eEEEecCCeEEEEccccCCeEEEEECcHHhhc
Confidence 46777899999999999878899988775543
No 479
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=23.69 E-value=1.3e+03 Score=27.37 Aligned_cols=193 Identities=17% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCEEEEEeeCCeEEEEecCCCCceeEEEEeecC-------CCCCCCCCCeeEEEECCCCCEEEE------EEcCCcEEE
Q 001567 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDW-------GYSMDDTGPVSCIAWTPDNSAFAV------GWKSRGLTV 333 (1052)
Q Consensus 267 d~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~-------~~~~~h~g~V~~l~~SpDg~~Las------g~~Dg~v~v 333 (1052)
+..+++-|-.++.|.|.|+.+..+.-+..+..+- +++..|+ +.--|+|+.++| |..-|++.+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT-----~Hclp~G~imIS~lGd~~G~g~Ggf~l 161 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHT-----VHCLPDGRIMISALGDADGNGPGGFVL 161 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEE-----EEE-SS--EEEEEEEETTS-S--EEEE
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCce-----eeecCCccEEEEeccCCCCCCCCcEEE
Q ss_pred EEcCCCeEEEEecc--cccCceeeeeEcCCCCCCccceeeee-----------------------eeeEEecCCceEEEE
Q 001567 334 WSVSGCRLMSTIRQ--ISLSSISSPIVKPNQDCKYEPLMSGT-----------------------SMMQWDEYGYRLYAI 388 (1052)
Q Consensus 334 Wd~~~~~l~~tl~~--~~~~~v~s~~~sp~~~~~~~~l~sg~-----------------------~~~~W~~~~~~l~~~ 388 (1052)
.|-.+-.....-.. ....--...-+.|.. +.++|.. ++.+|+....+++.+
T Consensus 162 lD~~tf~v~g~We~~~~~~~~gYDfw~qpr~----nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~ 237 (461)
T PF05694_consen 162 LDGETFEVKGRWEKDRGPQPFGYDFWYQPRH----NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQT 237 (461)
T ss_dssp E-TTT--EEEE--SB-TT------EEEETTT----TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEE
T ss_pred EcCccccccceeccCCCCCCCCCCeEEcCCC----CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeE
Q ss_pred ecCCcccE--EEEec------cceeeeeccCCceeeeEeeecCceEEEEecCCcchhee---eeeccCcccccCC-----
Q 001567 389 EEGSSERV--LIFSF------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI---LHLNLPVSYISQN----- 452 (1052)
Q Consensus 389 ~~~~~~~v--~~~s~------~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~~~~~~w---~~~~~p~~~~~h~----- 452 (1052)
+.-..+.. +.+.| ..-.+.+...+++..|--..+.. | ..+++|..-...-
T Consensus 238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~--------------W~a~kVi~ip~~~v~~~~lp~m 303 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE--------------WAAEKVIDIPAKKVEGWILPEM 303 (461)
T ss_dssp EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE--------------EEEEEEEEE--EE--SS---GG
T ss_pred EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC--------------eeeeEEEECCCcccCccccccc
Q ss_pred --------CcEEEEEEccCCCEEEEEeC-CceE-EEEccC
Q 001567 453 --------WPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQ 482 (1052)
Q Consensus 453 --------~~V~~va~SpdG~~lavag~-dG~i-lwd~~s 482 (1052)
.-|+.+.+|.|.++|.+++- +|.+ .||+..
T Consensus 304 l~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 304 LKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp GGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
No 480
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=23.43 E-value=1.3e+03 Score=27.27 Aligned_cols=279 Identities=14% Similarity=0.102 Sum_probs=131.3
Q ss_pred CCCEEEEEeeCCeEEEEecCCCC-ceeEEEEeecCCCCCCCCCCeeEEEECC-----CCCEEEEEEcCCcEEEEEcCCC-
Q 001567 267 EQQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTP-----DNSAFAVGWKSRGLTVWSVSGC- 339 (1052)
Q Consensus 267 d~~~lAsgs~Dg~V~vwd~~~~~-~~~~~l~~~~~~~~~~h~g~V~~l~~Sp-----Dg~~Lasg~~Dg~v~vWd~~~~- 339 (1052)
+...|++|+.+|.+|||+-...+ +....+-..+ -..||..|+.-+ +...||+-.- +.+.|+++...
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~------l~~PILqv~~G~F~s~~~~~~LaVLhP-~kl~vY~v~~~~ 108 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ------LKDPILQVECGKFVSGSEDLQLAVLHP-RKLSVYSVSLVD 108 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe------cCCcEEEEEeccccCCCCcceEEEecC-CEEEEEEEEecC
Confidence 34689999999999999986522 2112221111 356787776542 4457777554 78888887211
Q ss_pred -e-------EEEEeccccc-CceeeeeEcCCCCCC-ccceeeee---eeeEEecCCceEEEEecC--CcccEEEEec-cc
Q 001567 340 -R-------LMSTIRQISL-SSISSPIVKPNQDCK-YEPLMSGT---SMMQWDEYGYRLYAIEEG--SSERVLIFSF-GK 403 (1052)
Q Consensus 340 -~-------l~~tl~~~~~-~~v~s~~~sp~~~~~-~~~l~sg~---~~~~W~~~~~~l~~~~~~--~~~~v~~~s~-~k 403 (1052)
. .+..+-.|.. ....+...-|-|..+ .+.+.--+ +..+++-++.-.-....+ ..+. +.+.. .+
T Consensus 109 g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgP-l~Y~~~tD 187 (418)
T PF14727_consen 109 GTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGP-LCYCPRTD 187 (418)
T ss_pred CCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcC-eEEeecCC
Confidence 1 1111222211 112222233333322 22222111 444554443322222211 1122 22222 56
Q ss_pred eeeeeccCCceeeeEeee---cCceEEEEecCC----c---chheeeeeccCccccc-CCCcEEEEEEccCCCEEEEEeC
Q 001567 404 CCLNRGVSGMTYARQVIY---GEDRLLVVQSED----T---DELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAGL 472 (1052)
Q Consensus 404 ~~~s~s~d~~v~~w~~~~---~~~~l~~~~~~~----~---~~~~w~~~~~p~~~~~-h~~~V~~va~SpdG~~lavag~ 472 (1052)
++++++.+..+..+.... ..+...-..+.. . -.-.|... +| .--.|..+.++..-..+++-|+
T Consensus 188 sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n------lGE~~l~i~v~~~~~~~~~IvvLge 261 (418)
T PF14727_consen 188 SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN------LGEQALDIQVVRFSSSESDIVVLGE 261 (418)
T ss_pred EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE------CCceeEEEEEEEcCCCCceEEEEec
Confidence 667776665554433210 000000000000 0 00113110 00 0001344455545556666777
Q ss_pred CceEEEEccCCcEEEecCccc--eeeeEEEEE--EEeCC---EEEEEEEecCCCeEEEEEeeCCCCCCcceeEEeecCCc
Q 001567 473 HGLILYDIRQKKWRVFGDITQ--EQKIQSKGL--LWLGK---IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAK 545 (1052)
Q Consensus 473 dG~ilwd~~s~~w~~f~~~~~--e~~~~v~gl--~W~~~---~li~~~~~~~~~~~elrly~~~~ld~~~~l~~~~~~~~ 545 (1052)
+.....+- +|..+. ....+ -..+..-.. .|.++ .++++ +.+..|.+|.-. .+.|.-.++..
T Consensus 262 r~Lf~l~~-~G~l~~-~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~-----t~t~~LlVy~d~-----~L~WsA~l~~~ 329 (418)
T PF14727_consen 262 RSLFCLKD-NGSLRF-QKRLDYNPSCFCPYRVPWYNEPSTRLNLLVG-----THTGTLLVYEDT-----TLVWSAQLPHV 329 (418)
T ss_pred ceEEEEcC-CCeEEE-EEecCCceeeEEEEEeecccCCCCceEEEEE-----ecCCeEEEEeCC-----eEEEecCCCCC
Confidence 66655554 333321 11111 111222223 23333 25555 455789999553 68888888888
Q ss_pred cEEEEee-----CCEEEEEEcCCeEEEEEEE
Q 001567 546 PIVMDVY-----EDYILVTYRPFDVHIFHVK 571 (1052)
Q Consensus 546 ~~~~s~~-----~~~llv~~~d~~i~l~~~~ 571 (1052)
|+.+... .+.+++.+.+|.+.+--+-
T Consensus 330 PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLG 360 (418)
T PF14727_consen 330 PVALSVANFNGLKGLIVSLSDEGQLSVSYLG 360 (418)
T ss_pred CEEEEecccCCCCceEEEEcCCCcEEEEEeC
Confidence 9887653 4567778889999987664
No 481
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=22.97 E-value=1.7e+03 Score=28.68 Aligned_cols=20 Identities=10% Similarity=0.006 Sum_probs=16.0
Q ss_pred CccEEEEEeCCcEEEEEEEE
Q 001567 78 DTKLIAVVTSSLYLHIFKVQ 97 (1052)
Q Consensus 78 Dg~~Lav~t~dg~l~i~~l~ 97 (1052)
+...++..|.+|+++-..+.
T Consensus 601 ~~~~lvliT~~GyiKRi~l~ 620 (800)
T TIGR01063 601 DGLYLFFATKNGVVKKTSLT 620 (800)
T ss_pred CCCEEEEEeCCCEEEEEEhH
Confidence 45678889999999887765
No 482
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=22.79 E-value=11 Score=43.60 Aligned_cols=71 Identities=27% Similarity=0.398 Sum_probs=53.1
Q ss_pred CeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCCCCeeEEEECCCCCEEEEE-EcCCcEEEEEc
Q 001567 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSV 336 (1052)
Q Consensus 258 ~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~~SpDg~~Lasg-~~Dg~v~vWd~ 336 (1052)
.++...|-|.+.-+|+|+.+..|..||-. ++....+. .+|....++|.-+|..+++. -..+.+.+|++
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~a--gq~~le~n---------~tg~aldm~wDkegdvlavlAek~~piylwd~ 104 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKA--GQVILELN---------PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDV 104 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhh--cceecccC---------CchhHhhhhhccccchhhhhhhcCCCeeechh
Confidence 45567788888889999999999999954 33332222 47788899999999866654 45589999999
Q ss_pred CCC
Q 001567 337 SGC 339 (1052)
Q Consensus 337 ~~~ 339 (1052)
.+.
T Consensus 105 n~e 107 (615)
T KOG2247|consen 105 NSE 107 (615)
T ss_pred hhh
Confidence 654
No 483
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=22.75 E-value=1.4e+03 Score=29.11 Aligned_cols=112 Identities=17% Similarity=0.248 Sum_probs=58.1
Q ss_pred EEEeeCCcEEEEEecCCc-eeeeeec---ccceecC-CCCeE-EEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEe
Q 001567 224 FVLYSNGQLMSCSVSKKG-LKLAEFI---KIDKELG-SGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (1052)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~-i~~w~~~---~~~~~~g-h~~~v-~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~ 297 (1052)
+..+..|+++++|-+.|. +-.-|.. -++...| ..+.+ +++++.+..++.+ .+|.|.-|.++...+ +.....
T Consensus 190 vfl~~kgqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT--~~g~Vys~GlN~~hq-LG~~~~ 266 (1267)
T KOG0783|consen 190 VFLTEKGQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLT--KFGSVYSWGLNGSHQ-LGLSND 266 (1267)
T ss_pred eEecCCCcEEEeccCCCCccCcCcccccccccccccccccceEEEEeecceeEEEe--ecceEEEeecCcccc-cCCcCc
Confidence 445567887777655432 1111111 1122233 33456 9999999887765 789999998875221 110000
Q ss_pred e-cCC--------CCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEE
Q 001567 298 Y-DWG--------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM 342 (1052)
Q Consensus 298 ~-~~~--------~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~ 342 (1052)
. ... +..+.. .|-.|+ -|+.--++|.|..|..|-+.+|++-
T Consensus 267 ~~~~~~p~qI~a~r~kg~~-~iIgva---Ag~~hsVawt~~~VY~wGlN~GQlG 316 (1267)
T KOG0783|consen 267 ELKKDDPIQITARRIKGFK-QIIGVA---AGKSHSVAWTDTDVYSWGLNNGQLG 316 (1267)
T ss_pred hhhcCchhhhhhHhhcchh-hhhhhh---cccceeeeeecceEEEecccCceec
Confidence 0 000 000011 111111 2444556777889999999988753
No 484
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.51 E-value=6.4e+02 Score=27.91 Aligned_cols=94 Identities=19% Similarity=0.208 Sum_probs=52.7
Q ss_pred eEEEEccCCcEEEecCccceeeeEEEEEEEe-CCEEEE-EEEecCC-CeEEEEEeeCCCCCCcceeE--EeecCCccEEE
Q 001567 475 LILYDIRQKKWRVFGDITQEQKIQSKGLLWL-GKIIVV-CNYIDSS-NTYELLFYPRYHLDQSSLLC--RKSLLAKPIVM 549 (1052)
Q Consensus 475 ~ilwd~~s~~w~~f~~~~~e~~~~v~gl~W~-~~~li~-~~~~~~~-~~~elrly~~~~ld~~~~l~--~~~~~~~~~~~ 549 (1052)
..+||..+.+|..+++. -.-.|..+.|. ++.+++ |...... ....+..|+.+.-.=..+.. .-.+|.++..+
T Consensus 18 lC~yd~~~~qW~~~g~~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 18 LCLYDTDNSQWSSPGNG---ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred EEEEECCCCEeecCCCC---ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 33999999999999875 22458899996 555554 5444434 56677888774110001111 01245554444
Q ss_pred Ee---eCCEEEE--EEcCCeEEEEEEE
Q 001567 550 DV---YEDYILV--TYRPFDVHIFHVK 571 (1052)
Q Consensus 550 s~---~~~~llv--~~~d~~i~l~~~~ 571 (1052)
.. +.+.+.+ ...++...|.++.
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEc
Confidence 33 3333443 2266777777663
No 485
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=21.02 E-value=7.6e+02 Score=26.65 Aligned_cols=118 Identities=14% Similarity=0.220 Sum_probs=60.4
Q ss_pred EeeCCcEEEEEecC---Cceeeeeecc---ccee------cCCCCeE-EEEEcCCCCEEEEEeeCC-eEEEEecCCCCce
Q 001567 226 LYSNGQLMSCSVSK---KGLKLAEFIK---IDKE------LGSGDAV-CASIAPEQQILAVGTRRG-VVELYDLAESASL 291 (1052)
Q Consensus 226 ~s~dG~~~~~~~~d---~~i~~w~~~~---~~~~------~gh~~~v-~va~spd~~~lAsgs~Dg-~V~vwd~~~~~~~ 291 (1052)
+.+||+++.+++.. ..++..+.-. ...| ......- ++..=|||+.|++|+.+. +...|.-......
T Consensus 74 ~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~ 153 (243)
T PF07250_consen 74 FLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPG 153 (243)
T ss_pred CCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCC
Confidence 45788888777642 2344443221 0011 0112222 455668999999888774 4555554221111
Q ss_pred eEEEEeec-CC-CCCCCCCCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecc
Q 001567 292 IRTVSLYD-WG-YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (1052)
Q Consensus 292 ~~~l~~~~-~~-~~~~h~g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~ 347 (1052)
...+.... .. .....--+ .+...|||+.++.+..+ -.|||..+...+.++..
T Consensus 154 ~~~~~~l~~~~~~~~~nlYP--~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 154 PVTLPFLSQTSDTLPNNLYP--FVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLPD 207 (243)
T ss_pred ceeeecchhhhccCccccCc--eEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCCC
Confidence 11111100 00 00001111 35567999999888763 45779988876666654
No 486
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=20.92 E-value=3.1e+02 Score=31.96 Aligned_cols=155 Identities=14% Similarity=0.039 Sum_probs=76.3
Q ss_pred cCceeeeeEcCCCCCCccceeeeeeeeEEecCCceE-----EEEecCCc-ccE----EEEeccceeeeeccCCceeeeE-
Q 001567 350 LSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRL-----YAIEEGSS-ERV----LIFSFGKCCLNRGVSGMTYARQ- 418 (1052)
Q Consensus 350 ~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l-----~~~~~~~~-~~v----~~~s~~k~~~s~s~d~~v~~w~- 418 (1052)
.+.|..+-..|++ +.-++.+|++..+.......+ .-...+.. ..| .-++=+.++..++.||.+..|-
T Consensus 220 ~~~v~qllL~Pdg--~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 220 FSDVSQLLLTPDG--KTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred ccchHhhEECCCC--CEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 3556677777887 334567777777766544322 11111210 111 1122277888889999888874
Q ss_pred eeecCceEEEEecCCcchheeeeeccCcccccCCCcEEEEEEccCCCEEEEEeCCceE-EEEccCCcEEEecCccceeee
Q 001567 419 VIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKI 497 (1052)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG~~lavag~dG~i-lwd~~s~~w~~f~~~~~e~~~ 497 (1052)
+..++..- .+| ...+.-...++..+.-..+.+-+++-.++|+. .+...+.+--+|....+ ..
T Consensus 298 vr~~~~p~------------l~h---~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~--~~ 360 (733)
T COG4590 298 VRRDGQPH------------LNH---IRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ--AP 360 (733)
T ss_pred eecCCCCc------------cee---eeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc--Cc
Confidence 33332210 000 01111111233333333345556666777777 44433434334433222 22
Q ss_pred EEEEEEEeCCEEEEEEEecCCCeEEEEEeeCC
Q 001567 498 QSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (1052)
Q Consensus 498 ~v~gl~W~~~~li~~~~~~~~~~~elrly~~~ 529 (1052)
.+..+.-+++++++- +...+++|..+
T Consensus 361 ~~~~~Sp~~~~Ll~e------~~gki~~~~l~ 386 (733)
T COG4590 361 QLVAMSPNQAYLLSE------DQGKIRLAQLE 386 (733)
T ss_pred ceeeeCcccchheee------cCCceEEEEec
Confidence 355666677787762 33556666553
No 487
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=20.76 E-value=2.1e+02 Score=28.75 Aligned_cols=68 Identities=16% Similarity=0.113 Sum_probs=45.2
Q ss_pred cCChHHHHHHHHhcCcHhHHhhhhhhhhhccCcchhHHHHHHHHHHHHhcccHhHHHHHHHHhhhcCcC
Q 001567 864 AGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLLRSGRE 932 (1052)
Q Consensus 864 ~g~P~~Lf~~cl~~~~l~~aa~yLiv~~~~e~~~~~~~~~~~Ll~~al~~~~w~l~~eL~RFl~~~~~~ 932 (1052)
.++|+++|+.|++..+.-|.-.+=|+=...+.-|.+.-.-++=++ +=+.++-++..+|+++++.++.+
T Consensus 80 ~~s~~e~f~~tlehEq~vt~~I~~L~~~a~~~kD~~T~nFLqWfv-~EQ~eEe~l~~~I~d~~~~ag~~ 147 (167)
T COG1528 80 FSSLKELFEKTLEHEQKVTSSINELAEVAREEKDYATFNFLQWFV-AEQVEEEKLFKTILDKLELAGND 147 (167)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 468999999999998877776666655555554433222222221 12225667999999999999864
No 488
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=20.01 E-value=1.5e+02 Score=22.84 Aligned_cols=31 Identities=19% Similarity=0.486 Sum_probs=23.5
Q ss_pred EEEccCCCEEEEEeC---C-----ceE-EEEccCCcEEEe
Q 001567 458 VAASKDGMFLAVAGL---H-----GLI-LYDIRQKKWRVF 488 (1052)
Q Consensus 458 va~SpdG~~lavag~---d-----G~i-lwd~~s~~w~~f 488 (1052)
.+..++++.++.||. + ..+ +||+.+..|+..
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~ 45 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTEL 45 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeec
Confidence 455678999999988 1 245 889999999864
Done!