BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001568
(1051 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/1054 (47%), Positives = 664/1054 (62%), Gaps = 89/1054 (8%)
Query: 8 AWSWTVEQCLKEYNVKLDKGLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVK 67
A S T E+CL + V GL+ +V++ E+YG NEL E+GK LW+LVLEQF+D LV+
Sbjct: 4 AHSKTTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVLEQFEDLLVR 63
Query: 68 ILLVAAFISFILAYFHSSDSGDSGFEDYXXXXXXXXXXXXXXXXXXWQESNAEKALEALK 127
ILL+AA ISF+LA+F + G+ + WQE NAE A+EALK
Sbjct: 64 ILLLAACISFVLAWF---EEGEETVTAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 128 KIQCESGKVLR-DGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSL 186
+ + E GKV R D V + A +VPGDIVE+ VGDKVPAD+R+ +K+++LRV+QS L
Sbjct: 121 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSIL 180
Query: 187 TGEAMPILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIH 246
TGE++ ++K T PV Q K+NM+F+GT + G + IV TG+ TEIGKI+ Q+
Sbjct: 181 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQM- 239
Query: 247 DASLEESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDG--WPANVQFSF 304
A+ E+ TPL++KLDEFG +L+ I L+C+ VW++N +F D V G W
Sbjct: 240 -AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHF--NDPVHGGSW-------I 289
Query: 305 EKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVIC 364
YYFKIAVALAVAAIPEGLPAVITTCLALGTR+MA+KNAIVR LPSVETLGCT+VIC
Sbjct: 290 RGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVIC 349
Query: 365 SDKTGTLTTNQMSVTEFFTLGR---KTTISRIFHVEGTTYDPKDGGIV--DWPCYNMDAN 419
SDKTGTLTTNQMSV + F + R + F V G+TY P +G ++ D P + +
Sbjct: 350 SDKTGTLTTNQMSVCKMFIIDRIDGDLCLLNEFSVTGSTYAP-EGEVLKNDKPVRSGQYD 408
Query: 420 -LQAMAKICAVCNDAGVYCDGP--LFRATGLPTEAALKVLVEKMGFPDVKGRNKISDTQL 476
L +A ICA+CND+ + + ++ G TE AL LVEKM + + RN +S +
Sbjct: 409 GLVELATICALCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNVFNTEVRN-LSKVER 467
Query: 477 AANYLIDSSTVRLGCCEWWTKRSKRVATLEFDRIRKSMSVIV-----REPTGHNQLLVKG 531
A C + K+ TLEF R RKSMSV R G N++ VKG
Sbjct: 468 AN-----------ACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVG-NKMFVKG 515
Query: 532 SVESLLERSSHVQLADGSVVPLDEPCWQLMLS--RHLEMSSKGLRCLGMAYKDELGEFSD 589
+ E +++R ++V++ + VP+ P + +LS + LRCL +A +D
Sbjct: 516 APEGVIDRCNYVRVGT-TRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRD------- 567
Query: 590 YYSESHPAHKKLL--DPSCYSTIESDLVFVGVVGLRDPPRGGVDKAIDDCRGAGIEVMVI 647
+ P ++++ D + + E+DL FVGVVG+ DPPR V +I CR AGI V++I
Sbjct: 568 ----TPPKREEMVLDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMI 623
Query: 648 TGDNKSTAEAICRQIKLFSGNEDLTGRSFTGKEFMALSSTQQIEALSKHGGKVFSRAEPR 707
TGDNK TA AICR+I +F NED+ R++TG+EF L +Q EA + F+R EP
Sbjct: 624 TGDNKGTAIAICRRIGIFGENEDVADRAYTGREFDDLPLAEQREACRR--ACCFARVEPT 681
Query: 708 HKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTEVAKEASDMVLADDNFG 767
HK +IV L+ E+ AMTGDGVNDAPALK A+IG+AMG +GT VAK AS+MVLADDNF
Sbjct: 682 HKSKIVEYLQSFDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFS 740
Query: 768 SIVSAVAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAALGIPECLIPVQLLWVNLVTDG 827
+IV+AV EGR+IYNNMK FIRY+ISSNVGEV+ IFLTAALG+PE LIPVQLLWVNLVTDG
Sbjct: 741 TIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 800
Query: 828 PPATALGFNPADVDIMQKPPRKIDDALINSWVLLRYLVIGSYVGIATVGIFVLWYTKGSF 887
PATALGFNP D+DIM +PPR + LI+ W+ RY+ IG YVG ATVG W+
Sbjct: 801 LPATALGFNPPDLDIMDRPPRTPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWF----- 855
Query: 888 MGINLVGDGHTLVTLPQLRNWGECSTWS-NFTVAPYAVGGGQMITFSNPCDYFTIGKVKA 946
L + VT QL ++ +CS S +F G F P +
Sbjct: 856 ----LYAEDGPHVTYSQLTHFMKCSEHSPDFE-------GVDCEVFEAP---------QP 895
Query: 947 MTLSLSVLVAIEMFNSLNALSEDNSLVTMPPWRNPWLLVAMSVSLGLHCLILYVPFLADV 1006
MT++LSVLV IEM N+LN+LSE+ SLV MPPW N WL+ ++ +S+ LH LILYV L +
Sbjct: 896 MTMALSVLVTIEMCNALNSLSENQSLVRMPPWVNIWLVGSIGLSMSLHFLILYVDPLPMI 955
Query: 1007 FGVVPLNLNEWFLVILVSAPVILIDEVLKFVGRN 1040
F + L+L W +V+ +S PVI +DE+LKFV RN
Sbjct: 956 FKLQALDLYHWLMVLKISLPVIGLDEILKFVARN 989
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In The
Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In The
Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In The
Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg In
The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg In
The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp And
Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp And
Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/1055 (47%), Positives = 669/1055 (63%), Gaps = 90/1055 (8%)
Query: 8 AWSWTVEQCLKEYNVKLDKGLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVK 67
A S + E+CL + V GL+ +V++ E+YG NEL E+GK LW+LV+EQF+D LV+
Sbjct: 5 AHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVR 64
Query: 68 ILLVAAFISFILAYFHSSDSGDSGFEDYXXXXXXXXXXXXXXXXXXWQESNAEKALEALK 127
ILL+AA ISF+LA+F + G+ + WQE NAE A+EALK
Sbjct: 65 ILLLAACISFVLAWF---EEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 121
Query: 128 KIQCESGKVLR-DGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSL 186
+ + E GKV R D V + A +VPGDIVE+ VGDKVPAD+R+ ++K+++LRV+QS L
Sbjct: 122 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSIL 181
Query: 187 TGEAMPILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIH 246
TGE++ ++K T PV Q K+NM+F+GT + G + IV TG++TEIGKI+ Q+
Sbjct: 182 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM- 240
Query: 247 DASLEESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDG--WPANVQFSF 304
A+ E+ TPL++KLDEFG +L+ I L+C+ VW++N +F D V G W
Sbjct: 241 -AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHF--NDPVHGGSW-------I 290
Query: 305 EKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVIC 364
YYFKIAVALAVAAIPEGLPAVITTCLALGTR+MA+KNAIVR LPSVETLGCT+VIC
Sbjct: 291 RGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVIC 350
Query: 365 SDKTGTLTTNQMSVTEFFTL----GRKTTISRIFHVEGTTYDPKDGGIV--DWPCYNMDA 418
SDKTGTLTTNQMSV + F + G +++ F + G+TY P +G ++ D P +
Sbjct: 351 SDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNE-FSITGSTYAP-EGEVLKNDKPIRSGQF 408
Query: 419 N-LQAMAKICAVCNDAGVYCDGP--LFRATGLPTEAALKVLVEKMGFPDVKGRNKISDTQ 475
+ L +A ICA+CND+ + + ++ G TE AL LVEKM + + RN +S +
Sbjct: 409 DGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRN-LSKVE 467
Query: 476 LAANYLIDSSTVRLGCCEWWTKRSKRVATLEFDRIRKSMSVIV------REPTGHNQLLV 529
A C + K+ TLEF R RKSMSV R G N++ V
Sbjct: 468 RAN-----------ACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVG-NKMFV 515
Query: 530 KGSVESLLERSSHVQLADGSVVPLDEPCWQLMLS--RHLEMSSKGLRCLGMAYKDELGEF 587
KG+ E +++R ++V++ + VP+ P + +LS + LRCL +A +D
Sbjct: 516 KGAPEGVIDRCNYVRVGT-TRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRD----- 569
Query: 588 SDYYSESHPAHKKLL--DPSCYSTIESDLVFVGVVGLRDPPRGGVDKAIDDCRGAGIEVM 645
+ P ++++ D S + E+DL FVGVVG+ DPPR V +I CR AGI V+
Sbjct: 570 ------TPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVI 623
Query: 646 VITGDNKSTAEAICRQIKLFSGNEDLTGRSFTGKEFMALSSTQQIEALSKHGGKVFSRAE 705
+ITGDNK TA AICR+I +F NE++ R++TG+EF L +Q EA + F+R E
Sbjct: 624 MITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRR--ACCFARVE 681
Query: 706 PRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTEVAKEASDMVLADDN 765
P HK +IV L+ E+ AMTGDGVNDAPALK A+IG+AMG +GT VAK AS+MVLADDN
Sbjct: 682 PSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDN 740
Query: 766 FGSIVSAVAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAALGIPECLIPVQLLWVNLVT 825
F +IV+AV EGR+IYNNMK FIRY+ISSNVGEV+ IFLTAALG+PE LIPVQLLWVNLVT
Sbjct: 741 FSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVT 800
Query: 826 DGPPATALGFNPADVDIMQKPPRKIDDALINSWVLLRYLVIGSYVGIATVGIFVLWYTKG 885
DG PATALGFNP D+DIM +PPR + LI+ W+ RY+ IG YVG ATVG W+
Sbjct: 801 DGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYA 860
Query: 886 SFMGINLVGDGHTLVTLPQLRNWGECSTWSNFTVAPYAVGGGQMITFSNPCDYFTIGKVK 945
DG VT QL ++ +C+ P+ G C+ F +
Sbjct: 861 E--------DGPG-VTYHQLTHFMQCTEDH-----PHFEGLD--------CEIFE--APE 896
Query: 946 AMTLSLSVLVAIEMFNSLNALSEDNSLVTMPPWRNPWLLVAMSVSLGLHCLILYVPFLAD 1005
MT++LSVLV IEM N+LN+LSE+ SL+ MPPW N WLL ++ +S+ LH LILYV L
Sbjct: 897 PMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPM 956
Query: 1006 VFGVVPLNLNEWFLVILVSAPVILIDEVLKFVGRN 1040
+F + L+L +W +V+ +S PVI +DE+LKF+ RN
Sbjct: 957 IFKLKALDLTQWLMVLKISLPVIGLDEILKFIARN 991
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The Serca
Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound To
Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound To
Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/1055 (47%), Positives = 669/1055 (63%), Gaps = 90/1055 (8%)
Query: 8 AWSWTVEQCLKEYNVKLDKGLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVK 67
A S + E+CL + V GL+ +V++ E+YG NEL E+GK LW+LV+EQF+D LV+
Sbjct: 4 AHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVR 63
Query: 68 ILLVAAFISFILAYFHSSDSGDSGFEDYXXXXXXXXXXXXXXXXXXWQESNAEKALEALK 127
ILL+AA ISF+LA+F + G+ + WQE NAE A+EALK
Sbjct: 64 ILLLAACISFVLAWF---EEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 128 KIQCESGKVLR-DGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSL 186
+ + E GKV R D V + A +VPGDIVE+ VGDKVPAD+R+ ++K+++LRV+QS L
Sbjct: 121 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSIL 180
Query: 187 TGEAMPILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIH 246
TGE++ ++K T PV Q K+NM+F+GT + G + IV TG++TEIGKI+ Q+
Sbjct: 181 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM- 239
Query: 247 DASLEESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDG--WPANVQFSF 304
A+ E+ TPL++KLDEFG +L+ I L+C+ VW++N +F D V G W
Sbjct: 240 -AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHF--NDPVHGGSW-------I 289
Query: 305 EKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVIC 364
YYFKIAVALAVAAIPEGLPAVITTCLALGTR+MA+KNAIVR LPSVETLGCT+VIC
Sbjct: 290 RGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVIC 349
Query: 365 SDKTGTLTTNQMSVTEFFTL----GRKTTISRIFHVEGTTYDPKDGGIV--DWPCYNMDA 418
SDKTGTLTTNQMSV + F + G +++ F + G+TY P +G ++ D P +
Sbjct: 350 SDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNE-FSITGSTYAP-EGEVLKNDKPIRSGQF 407
Query: 419 N-LQAMAKICAVCNDAGVYCDGP--LFRATGLPTEAALKVLVEKMGFPDVKGRNKISDTQ 475
+ L +A ICA+CND+ + + ++ G TE AL LVEKM + + RN +S +
Sbjct: 408 DGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRN-LSKVE 466
Query: 476 LAANYLIDSSTVRLGCCEWWTKRSKRVATLEFDRIRKSMSVIV------REPTGHNQLLV 529
A C + K+ TLEF R RKSMSV R G N++ V
Sbjct: 467 RAN-----------ACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVG-NKMFV 514
Query: 530 KGSVESLLERSSHVQLADGSVVPLDEPCWQLMLS--RHLEMSSKGLRCLGMAYKDELGEF 587
KG+ E +++R ++V++ + VP+ P + +LS + LRCL +A +D
Sbjct: 515 KGAPEGVIDRCNYVRVGT-TRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRD----- 568
Query: 588 SDYYSESHPAHKKLL--DPSCYSTIESDLVFVGVVGLRDPPRGGVDKAIDDCRGAGIEVM 645
+ P ++++ D S + E+DL FVGVVG+ DPPR V +I CR AGI V+
Sbjct: 569 ------TPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVI 622
Query: 646 VITGDNKSTAEAICRQIKLFSGNEDLTGRSFTGKEFMALSSTQQIEALSKHGGKVFSRAE 705
+ITGDNK TA AICR+I +F NE++ R++TG+EF L +Q EA + F+R E
Sbjct: 623 MITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRR--ACCFARVE 680
Query: 706 PRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTEVAKEASDMVLADDN 765
P HK +IV L+ E+ AMTGDGVNDAPALK A+IG+AMG +GT VAK AS+MVLADDN
Sbjct: 681 PSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDN 739
Query: 766 FGSIVSAVAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAALGIPECLIPVQLLWVNLVT 825
F +IV+AV EGR+IYNNMK FIRY+ISSNVGEV+ IFLTAALG+PE LIPVQLLWVNLVT
Sbjct: 740 FSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVT 799
Query: 826 DGPPATALGFNPADVDIMQKPPRKIDDALINSWVLLRYLVIGSYVGIATVGIFVLWYTKG 885
DG PATALGFNP D+DIM +PPR + LI+ W+ RY+ IG YVG ATVG W+
Sbjct: 800 DGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYA 859
Query: 886 SFMGINLVGDGHTLVTLPQLRNWGECSTWSNFTVAPYAVGGGQMITFSNPCDYFTIGKVK 945
DG VT QL ++ +C+ P+ G C+ F +
Sbjct: 860 E--------DGPG-VTYHQLTHFMQCTEDH-----PHFEGLD--------CEIFE--APE 895
Query: 946 AMTLSLSVLVAIEMFNSLNALSEDNSLVTMPPWRNPWLLVAMSVSLGLHCLILYVPFLAD 1005
MT++LSVLV IEM N+LN+LSE+ SL+ MPPW N WLL ++ +S+ LH LILYV L
Sbjct: 896 PMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPM 955
Query: 1006 VFGVVPLNLNEWFLVILVSAPVILIDEVLKFVGRN 1040
+F + L+L +W +V+ +S PVI +DE+LKF+ RN
Sbjct: 956 IFKLKALDLTQWLMVLKISLPVIGLDEILKFIARN 990
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/1055 (47%), Positives = 668/1055 (63%), Gaps = 90/1055 (8%)
Query: 8 AWSWTVEQCLKEYNVKLDKGLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVK 67
A S + E+CL + V GL+ +V++ E+YG NEL E+GK LW+LV+EQF+D LV+
Sbjct: 4 AHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVR 63
Query: 68 ILLVAAFISFILAYFHSSDSGDSGFEDYXXXXXXXXXXXXXXXXXXWQESNAEKALEALK 127
ILL+AA ISF+LA+F + G+ + WQE NAE A+EALK
Sbjct: 64 ILLLAACISFVLAWF---EEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 128 KIQCESGKVLR-DGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSL 186
+ + E GKV R D V + A +VPGDIVE+ VGDKVPAD+R+ ++K+++LRV+QS L
Sbjct: 121 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSIL 180
Query: 187 TGEAMPILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIH 246
TGE++ ++K T PV Q K+NM+F+GT + G + IV TG++TEIGKI+ Q+
Sbjct: 181 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM- 239
Query: 247 DASLEESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDG--WPANVQFSF 304
A+ E+ TPL++KLDEFG +L+ I L+C+ VW++N +F D V G W
Sbjct: 240 -AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHF--NDPVHGGSW-------I 289
Query: 305 EKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVIC 364
YYFKIAVALAVAAIPEGLPAVITTCLALGTR+MA+KNAIVR LPSVETLGCT+VIC
Sbjct: 290 RGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVIC 349
Query: 365 SDKTGTLTTNQMSVTEFFTL----GRKTTISRIFHVEGTTYDPKDGGIV--DWPCYNMDA 418
S KTGTLTTNQMSV + F + G +++ F + G+TY P +G ++ D P +
Sbjct: 350 SXKTGTLTTNQMSVCKMFIIDKVDGDFCSLNE-FSITGSTYAP-EGEVLKNDKPIRSGQF 407
Query: 419 N-LQAMAKICAVCNDAGVYCDGP--LFRATGLPTEAALKVLVEKMGFPDVKGRNKISDTQ 475
+ L +A ICA+CND+ + + ++ G TE AL LVEKM + + RN +S +
Sbjct: 408 DGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRN-LSKVE 466
Query: 476 LAANYLIDSSTVRLGCCEWWTKRSKRVATLEFDRIRKSMSVIV------REPTGHNQLLV 529
A C + K+ TLEF R RKSMSV R G N++ V
Sbjct: 467 RAN-----------ACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVG-NKMFV 514
Query: 530 KGSVESLLERSSHVQLADGSVVPLDEPCWQLMLS--RHLEMSSKGLRCLGMAYKDELGEF 587
KG+ E +++R ++V++ + VP+ P + +LS + LRCL +A +D
Sbjct: 515 KGAPEGVIDRCNYVRVGT-TRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRD----- 568
Query: 588 SDYYSESHPAHKKLL--DPSCYSTIESDLVFVGVVGLRDPPRGGVDKAIDDCRGAGIEVM 645
+ P ++++ D S + E+DL FVGVVG+ DPPR V +I CR AGI V+
Sbjct: 569 ------TPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVI 622
Query: 646 VITGDNKSTAEAICRQIKLFSGNEDLTGRSFTGKEFMALSSTQQIEALSKHGGKVFSRAE 705
+ITGDNK TA AICR+I +F NE++ R++TG+EF L +Q EA + F+R E
Sbjct: 623 MITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRR--ACCFARVE 680
Query: 706 PRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTEVAKEASDMVLADDN 765
P HK +IV L+ E+ AMTGDGVNDAPALK A+IG+AMG +GT VAK AS+MVLADDN
Sbjct: 681 PSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDN 739
Query: 766 FGSIVSAVAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAALGIPECLIPVQLLWVNLVT 825
F +IV+AV EGR+IYNNMK FIRY+ISSNVGEV+ IFLTAALG+PE LIPVQLLWVNLVT
Sbjct: 740 FSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVT 799
Query: 826 DGPPATALGFNPADVDIMQKPPRKIDDALINSWVLLRYLVIGSYVGIATVGIFVLWYTKG 885
DG PATALGFNP D+DIM +PPR + LI+ W+ RY+ IG YVG ATVG W+
Sbjct: 800 DGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYA 859
Query: 886 SFMGINLVGDGHTLVTLPQLRNWGECSTWSNFTVAPYAVGGGQMITFSNPCDYFTIGKVK 945
DG VT QL ++ +C+ P+ G C+ F +
Sbjct: 860 E--------DGPG-VTYHQLTHFMQCTEDH-----PHFEGLD--------CEIFE--APE 895
Query: 946 AMTLSLSVLVAIEMFNSLNALSEDNSLVTMPPWRNPWLLVAMSVSLGLHCLILYVPFLAD 1005
MT++LSVLV IEM N+LN+LSE+ SL+ MPPW N WLL ++ +S+ LH LILYV L
Sbjct: 896 PMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPM 955
Query: 1006 VFGVVPLNLNEWFLVILVSAPVILIDEVLKFVGRN 1040
+F + L+L +W +V+ +S PVI +DE+LKF+ RN
Sbjct: 956 IFKLKALDLTQWLMVLKISLPVIGLDEILKFIARN 990
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 359 bits (922), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 300/1067 (28%), Positives = 495/1067 (46%), Gaps = 123/1067 (11%)
Query: 12 TVEQCLKEYNVKLDKGLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVKILLV 71
++++ ++Y L +GL+ + R G N L P W Q +L +
Sbjct: 22 SLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLWI 81
Query: 72 AAFISFILAYFHSSDSGDSGFEDYXXXXXXXXXXXXXXXXXXWQESNAEKALEALKKIQC 131
A + F+ ++ + ++ +QE+ + K +E+ K +
Sbjct: 82 GAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVP 141
Query: 132 ESGKVLRDGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSLTGEAM 191
+ V+R+G + + A +V GD+VE+ GD++PAD+R+ + + +V+ SSLTGE+
Sbjct: 142 QQALVIRNGEKM-SINAEEVVVGDLVEVKGGDRIPADLRI--ISANGCKVDNSSLTGESE 198
Query: 192 PILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIHDASLE 251
P + SP F ++ L+ + N+ F T V G+ IV+ TG T +G+I + LE
Sbjct: 199 P--QTRSPDFTNENPLETR-NIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLA--SGLE 253
Query: 252 ESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDGWPANVQFSFEKCTYYF 311
TP+ +++ F + +T + + +I++ +W E +
Sbjct: 254 GGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTW-------------LEAVIFL- 299
Query: 312 KIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTL 371
+ + VA +PEGL A +T CL L ++MA+KN +V+ L +VETLG T+ ICSDKTGTL
Sbjct: 300 ---IGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTL 356
Query: 372 TTNQMSVTEFFTLGRKTTISRIFHVEGTTYDPKDGGIVDWPCYNMDANLQAMAKICAVCN 431
T N+M+V ++ + + G ++D A A+++I +CN
Sbjct: 357 TQNRMTVAHMWSDNQIHEADTTENQSGVSFD------------KTSATWLALSRIAGLCN 404
Query: 432 DAGVYCDGPLFRATGLPTEAALKVLVEKMGFPDVKGRNKISDTQLAANYLIDSSTVRLGC 491
A +F+A + P +K R D +A L+ + G
Sbjct: 405 RA-------VFQAN-------------QENLPILK-RAVAGDASESA--LLKCIELCCGS 441
Query: 492 CEWWTKRSKRVATLEFDRIRKSMSVIVREPTG---HNQLLVKGSVESLLERSSHVQLADG 548
+ +R ++ + F+ K I + P + L++KG+ E +L+R S + L G
Sbjct: 442 VKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSI-LIHG 500
Query: 549 SVVPLDEPCWQLMLSRHLEMSSKGLRCLGMAY---KDELGEFSDYYSESHPAHKKLLDPS 605
PLDE + +LE+ G R LG + DE +F + + D
Sbjct: 501 KEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDE--QFPEGFQ---------FDTD 549
Query: 606 CYSTIESDLVFVGVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLF 665
+ +L FVG++ + DPPR V A+ CR AGI+V+++TGD+ TA+AI + + +
Sbjct: 550 DVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII 609
Query: 666 S-GNE---DLTGR----------------SFTGKEFMALSSTQQIEALSKHGGKVFSRAE 705
S GNE D+ R G + ++S Q + L H VF+R
Sbjct: 610 SEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTS 669
Query: 706 PRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTEVAKEASDMVLADDN 765
P+ K IV + G +VA+TGDGVND+PA K ADIGVAMGI G++V+K+A+DM+L DDN
Sbjct: 670 PQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDN 729
Query: 766 FGSIVSAVAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAALGIPECLIPVQLLWVNLVT 825
F SIV+ V EGR I++N+K I Y ++SN+ E+ + IP L V +L ++L T
Sbjct: 730 FASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGT 789
Query: 826 DGPPATALGFNPADVDIMQKPPRKID-DALINSWVL-LRYLVIGSYVGIATVGIFVLWYT 883
D PA +L + A+ DIM++ PR D L+N ++ + Y IG + + +
Sbjct: 790 DMVPAISLAYEQAESDIMKRQPRNPKTDKLVNEQLISMAYGQIGMIQALGGFFTYFVILA 849
Query: 884 KGSFMGINLVGDGHTLVTLPQLR-NWGECSTWSNFTVAPYAVGGGQMITFSNPCDYFTIG 942
+ F+ I+L+G LR NW + W N Y GQ T+ + I
Sbjct: 850 ENGFLPIHLLG----------LRVNWDD--RWINDVEDSY----GQQWTY----EQRKIV 889
Query: 943 KVKAMTLSLSVLVAIEMFNSLNALSEDNSLVTMPPWRNPWLLVAMSVSLGLHCLILYVPF 1002
+ T +V ++ + + + NS V +N L+ + L + Y P
Sbjct: 890 EFTCHTPFFVTIVVVQWADLVICKTRRNS-VFQQGMKNKILIFGLFEETALAAFLSYCPG 948
Query: 1003 LADVFGVVPLNLNEWFLVILVSAPVILIDEVLKFVGRNRRLSGKKEK 1049
+ + PL WF S + + DEV K + R RR G EK
Sbjct: 949 MGVALRMYPLKPTWWFCAFPYSLLIFVYDEVRKLIIR-RRPGGWVEK 994
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 359 bits (921), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 298/1053 (28%), Positives = 473/1053 (44%), Gaps = 119/1053 (11%)
Query: 12 TVEQCLKEYNVKLDKGLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVKILLV 71
+V + ++Y KGLS+ + R G N L +G P + Q L ++ V
Sbjct: 57 SVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWV 116
Query: 72 AAFISFILAYFHSSDSGDSGFEDYXXXXXXXXXXXXXXXXXXWQESNAEKALEALKKIQC 131
AA I I +S+ + ++ +QE + + + K +
Sbjct: 117 AAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVP 176
Query: 132 ESGKVLRDGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSLTGEAM 191
+ V+RDG + A LV GD+VE+ GD+VPAD+R+ L+ +V+ SSLTGE+
Sbjct: 177 QQATVIRDGDKF-QINADQLVVGDLVEMKGGDRVPADIRI--LQAQGRKVDNSSLTGESE 233
Query: 192 PILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIHDASLE 251
P + SP + L+ + N+ F T + G+ +V+NTG T IG+I + +E
Sbjct: 234 P--QTRSPECTHESPLETR-NIAFFSTMCLEGTAQGLVVNTGDRTIIGRIASLA--SGVE 288
Query: 252 ESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDGWPANVQFSFEKCTYYF 311
TP+ +++ F + + L +I+ + ++F + +F
Sbjct: 289 NEKTPIAIEIEHFVDIIAGLAILFGATFFIV--------------AMCIGYTFLRAMVFF 334
Query: 312 KIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTL 371
+A+ VA +PEGL A +T CL+L +++A KN +V+ L +VETLG T+VICSDKTGTL
Sbjct: 335 ---MAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTL 391
Query: 372 TTNQMSVTEFFTLGRKTTISRIFHVEGTTYDPKDGGIVDWPCYNMDANLQAMAKICAVCN 431
T N+M+V+ + H TT D + G D +A+ ++ +CN
Sbjct: 392 TQNRMTVSHLW-------FDNHIHSADTTED-QSGQTFD----QSSETWRALCRVLTLCN 439
Query: 432 DAGVYCDGPLFRATGLPTEAALKVLVEKMGFPDVKGRNKISDTQLAANYLIDSSTVRLGC 491
AA K + + P R I D A L+ S + LG
Sbjct: 440 ------------------RAAFKSGQDAVPVPK---RIVIGDASETA--LLKFSELTLGN 476
Query: 492 CEWWTKRSKRVATLEFDRIRKSMSVI--VREPTGHNQLLV-KGSVESLLERSSHVQLADG 548
+ +R +V + F+ K I + +P +LV KG+ E +LER S + L G
Sbjct: 477 AMGYRERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSI-LIKG 535
Query: 549 SVVPLDEPCWQLMLSRHLEMSSKGLRCLGMAYKDELGEFSDYYSESHPAHKKLLDPSCYS 608
+PLDE + + +L + G R LG Y SE D +
Sbjct: 536 QELPLDEQWREAFQTAYLSLGGLGERVLGFC--------QLYLSEKDYPPGYAFDVEAMN 587
Query: 609 TIESDLVFVGVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGN 668
S L F G+V + DPPR V A+ CR AGI V+++TGD+ TA+AI + + S
Sbjct: 588 FPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEG 647
Query: 669 ----EDLTGR----------------SFTGKEFMALSSTQQIEALSKHGGKVFSRAEPRH 708
ED+ R G + + ++ +EAL H VF+R P+
Sbjct: 648 SETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQ 707
Query: 709 KQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTEVAKEASDMVLADDNFGS 768
K IV + +G +VA+TGDGVND+PALK ADIGVAMGI G++ AK A+DM+L DDNF S
Sbjct: 708 KLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFAS 767
Query: 769 IVSAVAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAALGIPECLIPVQLLWVNLVTDGP 828
IV+ V +GR I++N+K I Y ++ N+ E+ + + +P L + +L++ L TD
Sbjct: 768 IVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIF 827
Query: 829 PATALGFNPADVDIMQKPPRKID-DALINS-WVLLRYLVIGSYVGIATVGIFVLWYTKGS 886
P+ +L + A+ DIM PR D L+N Y IG+ A + +
Sbjct: 828 PSVSLAYEKAESDIMHLRPRNPKRDRLVNEPLAAYSYFQIGAIQSFAGFTDYFTAMAQEG 887
Query: 887 FMGINLVGDGHTLVTLPQLRNWGECSTWSNFTVAPYAVGGGQMITFSNPCDYFTIGKVKA 946
+ + VG PQ W N + GQ TF +
Sbjct: 888 WFPLLCVG------LRPQ---------WENHHLQDLQDSYGQEWTFGQRL-------YQQ 925
Query: 947 MTLSLSVLVAIEMFNSLNALSEDN---SLVTMPPWRNPWLLVAMSVSLGLHCLILYVPFL 1003
T ++IEM + L S +RN L++A+ + + C + Y P +
Sbjct: 926 YTCYTVFFISIEMCQIADVLIRKTRRLSAFQQGFFRNRILVIAIVFQVCIGCFLCYCPGM 985
Query: 1004 ADVFGVVPLNLNEWFLVILVSAPVILIDEVLKF 1036
++F +P+ W + + + + DE+ K
Sbjct: 986 PNIFNFMPIRFQWWLVPMPFGLLIFVYDEIRKL 1018
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 356 bits (914), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 299/1067 (28%), Positives = 494/1067 (46%), Gaps = 123/1067 (11%)
Query: 12 TVEQCLKEYNVKLDKGLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVKILLV 71
++++ ++Y L +GL+ + R G N L P W Q +L +
Sbjct: 16 SLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLWI 75
Query: 72 AAFISFILAYFHSSDSGDSGFEDYXXXXXXXXXXXXXXXXXXWQESNAEKALEALKKIQC 131
A + F+ ++ + ++ +QE+ + K +E+ K +
Sbjct: 76 GAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVP 135
Query: 132 ESGKVLRDGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSLTGEAM 191
+ V+R+G + + A +V GD+VE+ GD++PAD+R+ + + +V+ SSLTGE+
Sbjct: 136 QQALVIRNGEKM-SINAEEVVVGDLVEVKGGDRIPADLRI--ISANGCKVDNSSLTGESE 192
Query: 192 PILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIHDASLE 251
P + SP F ++ L+ + N+ F T V G+ IV+ TG T +G+I + LE
Sbjct: 193 P--QTRSPDFTNENPLETR-NIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLA--SGLE 247
Query: 252 ESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDGWPANVQFSFEKCTYYF 311
TP+ +++ F + +T + + +I++ +W E +
Sbjct: 248 GGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTW-------------LEAVIFL- 293
Query: 312 KIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTL 371
+ + VA +PEGL A +T CL L ++MA+KN +V+ L +VETLG T+ ICS KTGTL
Sbjct: 294 ---IGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKTGTL 350
Query: 372 TTNQMSVTEFFTLGRKTTISRIFHVEGTTYDPKDGGIVDWPCYNMDANLQAMAKICAVCN 431
T N+M+V ++ + + G ++D A A+++I +CN
Sbjct: 351 TQNRMTVAHMWSDNQIHEADTTENQSGVSFD------------KTSATWLALSRIAGLCN 398
Query: 432 DAGVYCDGPLFRATGLPTEAALKVLVEKMGFPDVKGRNKISDTQLAANYLIDSSTVRLGC 491
A +F+A + P +K R D +A L+ + G
Sbjct: 399 RA-------VFQAN-------------QENLPILK-RAVAGDASESA--LLKCIELCCGS 435
Query: 492 CEWWTKRSKRVATLEFDRIRKSMSVIVREPTG---HNQLLVKGSVESLLERSSHVQLADG 548
+ +R ++ + F+ K I + P + L++KG+ E +L+R S + L G
Sbjct: 436 VKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSI-LIHG 494
Query: 549 SVVPLDEPCWQLMLSRHLEMSSKGLRCLGMAY---KDELGEFSDYYSESHPAHKKLLDPS 605
PLDE + +LE+ G R LG + DE +F + + D
Sbjct: 495 KEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDE--QFPEGFQ---------FDTD 543
Query: 606 CYSTIESDLVFVGVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLF 665
+ +L FVG++ + DPPR V A+ CR AGI+V+++TGD+ TA+AI + + +
Sbjct: 544 DVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII 603
Query: 666 S-GNE---DLTGR----------------SFTGKEFMALSSTQQIEALSKHGGKVFSRAE 705
S GNE D+ R G + ++S Q + L H VF+R
Sbjct: 604 SEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTS 663
Query: 706 PRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTEVAKEASDMVLADDN 765
P+ K IV + G +VA+TGDGVND+PA K ADIGVAMGI G++V+K+A+DM+L DDN
Sbjct: 664 PQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDN 723
Query: 766 FGSIVSAVAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAALGIPECLIPVQLLWVNLVT 825
F SIV+ V EGR I++N+K I Y ++SN+ E+ + IP L V +L ++L T
Sbjct: 724 FASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGT 783
Query: 826 DGPPATALGFNPADVDIMQKPPRKID-DALINSWVL-LRYLVIGSYVGIATVGIFVLWYT 883
D PA +L + A+ DIM++ PR D L+N ++ + Y IG + + +
Sbjct: 784 DMVPAISLAYEQAESDIMKRQPRNPKTDKLVNEQLISMAYGQIGMIQALGGFFTYFVILA 843
Query: 884 KGSFMGINLVGDGHTLVTLPQLR-NWGECSTWSNFTVAPYAVGGGQMITFSNPCDYFTIG 942
+ F+ I+L+G LR NW + W N Y GQ T+ + I
Sbjct: 844 ENGFLPIHLLG----------LRVNWDD--RWINDVEDSY----GQQWTY----EQRKIV 883
Query: 943 KVKAMTLSLSVLVAIEMFNSLNALSEDNSLVTMPPWRNPWLLVAMSVSLGLHCLILYVPF 1002
+ T +V ++ + + + NS V +N L+ + L + Y P
Sbjct: 884 EFTCHTPFFVTIVVVQWADLVICKTRRNS-VFQQGMKNKILIFGLFEETALAAFLSYCPG 942
Query: 1003 LADVFGVVPLNLNEWFLVILVSAPVILIDEVLKFVGRNRRLSGKKEK 1049
+ + PL WF S + + DEV K + R RR G EK
Sbjct: 943 MGVALRMYPLKPTWWFCAFPYSLLIFVYDEVRKLIIR-RRPGGWVEK 988
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 351 bits (901), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 299/1057 (28%), Positives = 502/1057 (47%), Gaps = 122/1057 (11%)
Query: 12 TVEQCLKEYNVKLDKGLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVKILLV 71
++++ +Y L +GL++ ++ R G N L P W Q +L +
Sbjct: 52 SLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWI 111
Query: 72 AAFISFILAYFHSSDSGDSGFEDYXXXXXXXXXXXXXXXXXXWQESNAEKALEALKKIQC 131
A + F+ ++ + ++ +QE+ + + +++ K +
Sbjct: 112 GAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVP 171
Query: 132 ESGKVLRDGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSLTGEAM 191
+ V+RDG + A +V GD+VE+ GD++PAD+R+ + +V+ SSLTGE+
Sbjct: 172 QQALVIRDGE-KSTINAEFVVAGDLVEVKGGDRIPADLRI--ISAHGCKVDNSSLTGESE 228
Query: 192 PILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIHDASLE 251
P + SP F + L+ + N+ F T V G+ +V+ TG T +G+I + LE
Sbjct: 229 P--QTRSPEFSSENPLETR-NIAFFSTNCVEGTARGVVVYTGDRTVMGRIATLA--SGLE 283
Query: 252 ESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDGWPANVQFSFEKCTYYF 311
TP+ +++ F + +T + + +I++ SW E +
Sbjct: 284 VGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGYSW-------------LEAVIFL- 329
Query: 312 KIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTL 371
+ + VA +PEGL A +T CL L ++MA+KN +V+ L +VETLG T+ ICSDKTGTL
Sbjct: 330 ---IGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTL 386
Query: 372 TTNQMSVTEFFTLGRKTTISRIFHVEGTTYDPKDGGIVDWPCYNMDANLQAMAKICAVCN 431
T N+M+V + H E T + + G D A A+++I A+CN
Sbjct: 387 TQNRMTVAHMW-------FDNQIH-EADTTENQSGAAFD----KTSATWSALSRIAALCN 434
Query: 432 DAGVYCDGPLFRATGLPTEAALKVLVEKMGFPDVKGRNKISDTQLAANYLIDSSTVRLGC 491
A +F+A G LK R+ D +A L+ + G
Sbjct: 435 RA-------VFQA-GQDNVPILK-------------RSVAGDASESA--LLKCIELCCGS 471
Query: 492 CEWWTKRSKRVATLEFDRIRK-SMSVIVREPTGHNQ--LLVKGSVESLLERSSHVQLADG 548
+ R+ ++ + F+ K +S+ E + ++ L++KG+ E +L+R S + L +G
Sbjct: 472 VQGMRDRNPKIVEIPFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTI-LLNG 530
Query: 549 SVVPLDEPCWQLMLSRHLEMSSKGLRCLGMAYKDELGEFSDYYSESHPAHKKLLDPSCYS 608
+ PL E + + +LE+ G R LG + D Y+E +P +P+ +
Sbjct: 531 AEEPLKEDMKEAFQNAYLELGGLGERVLGFCH---FALPEDKYNEGYPFDAD--EPNFPT 585
Query: 609 TIESDLVFVGVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFS-G 667
T DL FVG++ + DPPR V A+ CR AGI+V+++TGD+ TA+AI + + + S G
Sbjct: 586 T---DLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEG 642
Query: 668 NE---DLTGR----------------SFTGKEFMALSSTQQIEALSKHGGKVFSRAEPRH 708
NE D+ R G + LS+ + L H VF+R P+
Sbjct: 643 NETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQ 702
Query: 709 KQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTEVAKEASDMVLADDNFGS 768
K IV + G +VA+TGDGVND+PALK ADIGVAMGI+G++V+K+A+DM+L DDNF S
Sbjct: 703 KLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFAS 762
Query: 769 IVSAVAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAALG-IPECLIPVQLLWVNLVTDG 827
IV+ V EGR I++N+K I Y ++SN+ E I+ FL +G +P L V +L ++L TD
Sbjct: 763 IVTGVEEGRLIFDNLKKSIAYTLTSNIPE-ITPFLVFIIGNVPLPLGTVTILCIDLGTDM 821
Query: 828 PPATALGFNPADVDIMQKPPRKID-DALINSWVL-LRYLVIGSYVGIATVGIFVLWYTKG 885
PA +L + A+ DIM++ PR D L+N ++ + Y IG + + + +
Sbjct: 822 VPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFSYFVILAEN 881
Query: 886 SFMGINLVGDGHTLVTLPQLRNWGECSTWSNFTVAPYAVGGGQMITFSNPCDYFTIGKVK 945
F+ ++L+G ++R W + ++ GQ T+ K+
Sbjct: 882 GFLPMDLIGK--------RVR-------WDDRWISDVEDSFGQQWTYEQR-------KIV 919
Query: 946 AMTLSLSVLVAIEMFNSLNAL---SEDNSLVTMPPWRNPWLLVAMSVSLGLHCLILYVPF 1002
T S ++I + + + + NS+ +N L+ + L + Y P
Sbjct: 920 EFTCHTSFFISIVVVQWADLIICKTRRNSIFQQ-GMKNKILIFGLFEETALAAFLSYCPG 978
Query: 1003 LADVFGVVPLNLNEWFLVILVSAPVILIDEVLKFVGR 1039
+ PL + WF S + L DE+ +F+ R
Sbjct: 979 TDVALRMYPLKPSWWFCAFPYSLIIFLYDEMRRFIIR 1015
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 170/358 (47%), Gaps = 48/358 (13%)
Query: 27 GLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVKILLVAAFISFILAYFHSSD 86
GL+S EV +RR +YG N++ +EK ++ +K L F+ I +
Sbjct: 87 GLTSEEVVQRRRKYGLNQMKEEK------------ENHFLKFL--GFFVGPIQFVMEGAA 132
Query: 87 SGDSGFEDYXXXXXXXXXXXXXXXXXXWQESNAEKALEALKKIQCESGKVLRDGYLVPDL 146
+G ED+ QE A ++ LKK VLRDG L ++
Sbjct: 133 VLAAGLEDWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTL-KEI 191
Query: 147 PAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSLTGEAMPILKGTSPVFLDDCE 206
A +VPGDI+++ G +PAD R+ + L+V+QS+LTGE++ + K
Sbjct: 192 EAPEVVPGDILQVEEGTIIPADGRIVT-DDAFLQVDQSALTGESLAVDK----------- 239
Query: 207 LQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIHDASLEESDTPLRKKLDEFGN 266
K + VFA + V G ++ TG NT +G+ ++ AS + L+ G
Sbjct: 240 --HKGDQVFASSAVKRGEAFVVITATGDNTFVGRAAALVNAAS--GGSGHFTEVLNGIGT 295
Query: 267 RLTTAIGLVCLVVWIMNYRNFLSWDVVDGWPANVQFSFEKCTYYFKIAVALAVAAIPEGL 326
L + L+VW+ ++ + + +A+ + +P GL
Sbjct: 296 ILLILVIFTLLIVWVSSF-----------------YRSNPIVQILEFTLAITIIGVPVGL 338
Query: 327 PAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTEFFTL 384
PAV+TT +A+G +A+K AIV+KL ++E+L ++CSDKTGTLT N++S+ + +T+
Sbjct: 339 PAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYTV 396
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 135/303 (44%), Gaps = 45/303 (14%)
Query: 507 FDRIRKSMSVIVREPTGHNQLLVKGSVESLLERSSHVQLADGSVVPLDEPCWQLMLSRHL 566
FD + K + +V P G VKG+ +L+ P+ E Q ++
Sbjct: 451 FDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEEDH-------PIPEEVDQAYKNKVA 503
Query: 567 EMSSKGLRCLGMAYKDELGEFSDYYSESHPAHKKLLDPSCYSTIESDLVFVGVVGLRDPP 626
E +++G R LG+A K G + +G++ DPP
Sbjct: 504 EFATRGFRSLGVARKRGEGSWE---------------------------ILGIMPCMDPP 536
Query: 627 RGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFTGKEFMALSS 686
R K + + + G+ + ++TGD A RQ+ L G +
Sbjct: 537 RHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGL--GTNIYNAERLGLGGGGDMPG 594
Query: 687 TQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMG 746
++ + + G F+ P+HK +V +L++ G +VAMTGDGVNDAP+LK AD G+A+
Sbjct: 595 SEVYDFVEAADG--FAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVE 652
Query: 747 ITGTEVAKEASDMVLADDNFGSIVSAVAEGRSIYNNMKAFIRYMISSNVGEVISIFLTAA 806
++ A+ A+D+V G+I+ A+ R I++ M A++ Y I+ +SI L
Sbjct: 653 -GSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIA------LSIHLEIF 705
Query: 807 LGI 809
LG+
Sbjct: 706 LGL 708
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 125/248 (50%), Gaps = 43/248 (17%)
Query: 135 KVLRDGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRVEQSSLTGEAMPIL 194
KVLRDG AI LVPGDIV + +GD +PAD R+ L+ L+V+QS+LTGE++P+
Sbjct: 133 KVLRDGKWSEQEAAI-LVPGDIVSIKLGDIIPADARL--LEGDPLKVDQSALTGESLPVT 189
Query: 195 KGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIHDASLEESD 254
K VF+G+T G +VI TG++T GK H
Sbjct: 190 KHPG-------------QEVFSGSTCKQGEIEAVVIATGVHTFFGKAA---HLVDSTNQV 233
Query: 255 TPLRKKLDEFGNRL--TTAIGLVCLVVWIMNYRNFLSWDVVDGWPANVQFSFEKCTYYFK 312
+K L GN + AIG+V ++ V + ++ Y
Sbjct: 234 GHFQKVLTAIGNFCICSIAIGMVIEII--------------------VMYPIQRRKYRDG 273
Query: 313 I--AVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGT 370
I + L + IP +P V++ +A+G+ +++Q+ AI +++ ++E + V+CSDKTGT
Sbjct: 274 IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGT 333
Query: 371 LTTNQMSV 378
LT N++SV
Sbjct: 334 LTLNKLSV 341
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 102/190 (53%), Gaps = 4/190 (2%)
Query: 616 FVGVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRS 675
FVG++ L DPPR + I G+ V +ITGD + + R++ + + +
Sbjct: 479 FVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALL 538
Query: 676 FTGKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPA 735
T K+ L+S E + K G F+ P HK EIV+ L+E +V MTGDGVNDAPA
Sbjct: 539 GTHKD-ANLASIPVEELIEKADG--FAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPA 595
Query: 736 LKLADIGVAMGITGTEVAKEASDMVLADDNFGSIVSAVAEGRSIYNNMKAFIRYMISSNV 795
LK ADIG+A+ T+ A+ ASD+VL + I+SAV R+I+ MK + Y +S +
Sbjct: 596 LKKADIGIAVA-DATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITI 654
Query: 796 GEVISIFLTA 805
V L A
Sbjct: 655 RIVFGFMLIA 664
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 40/192 (20%)
Query: 618 GVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFT 677
G++ + D + A+ + + GI+V +ITGDN +AEAI R++ L DL
Sbjct: 450 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-----DL------ 498
Query: 678 GKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALK 737
V + P K E V+ L + EVVA GDG+NDAPAL
Sbjct: 499 ----------------------VIAEVLPHQKSEEVKKL-QAKEVVAFVGDGINDAPALA 535
Query: 738 LADIGVAMGITGTEVAKEASDMVLADDNFGSIVSAVAEGRSIYNNMKAFIRYMISSNVGE 797
AD+G+A+G +G++VA E+ D+VL D+ +V+A+ R + +K I + + NV
Sbjct: 536 QADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV-- 592
Query: 798 VISIFLTAALGI 809
I + AA G+
Sbjct: 593 ---ILIPAAAGL 601
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 114/269 (42%), Gaps = 35/269 (13%)
Query: 116 ESNAEKALEALKKIQCESGKVLRDGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALK 175
+S +A++ L +Q ++ V+RDG + +P + GDIV + G+K+P D V +
Sbjct: 117 KSRTGEAIKKLVGLQAKTAVVIRDGKEIA-VPVEEVAVGDIVIVRPGEKIPVDGVVVEGE 175
Query: 176 TSSLRVEQSSLTGEAMPILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMN 235
+ V++S ++GE +P+LK +K + VF T G G
Sbjct: 176 SY---VDESMISGEPVPVLK-------------SKGDEVFGATINNTGVLKIRATRVGGE 219
Query: 236 TEIGKIQKQIHDASLEESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDG 295
T + +I K + DA S P+++ D+ + LV + F+ W +
Sbjct: 220 TLLAQIVKLVEDAM--GSKPPIQRLADKVVAYFIPTVLLVAI-------SAFIYWYFIAH 270
Query: 296 WPANVQFSFEKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVE 355
P + F +A+ V A P T L +G K A+ +++ ++E
Sbjct: 271 AP---------LLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALE 321
Query: 356 TLGCTTVICSDKTGTLTTNQMSVTEFFTL 384
T + DKTGTLT + VT+ L
Sbjct: 322 VAEKVTAVIFDKTGTLTKGKPEVTDLVPL 350
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 40/192 (20%)
Query: 618 GVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFT 677
G++ + D + A+ + + GI+V +ITGDN +AEAI R++ L DL
Sbjct: 528 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-----DL------ 576
Query: 678 GKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALK 737
V + P K E V+ L + EVVA GDG+NDAPAL
Sbjct: 577 ----------------------VIAEVLPHQKSEEVKKL-QAKEVVAFVGDGINDAPALA 613
Query: 738 LADIGVAMGITGTEVAKEASDMVLADDNFGSIVSAVAEGRSIYNNMKAFIRYMISSNVGE 797
AD+G+A+G +G++VA E+ D+VL D+ +V+A+ R + +K I + + NV
Sbjct: 614 QADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV-- 670
Query: 798 VISIFLTAALGI 809
I + AA G+
Sbjct: 671 ---ILIPAAAGL 679
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 114/269 (42%), Gaps = 35/269 (13%)
Query: 116 ESNAEKALEALKKIQCESGKVLRDGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALK 175
+S +A++ L +Q ++ V+RDG + +P + GDIV + G+K+P D V +
Sbjct: 195 KSRTGEAIKKLVGLQAKTAVVIRDGKEIA-VPVEEVAVGDIVIVRPGEKIPVDGVVVEGE 253
Query: 176 TSSLRVEQSSLTGEAMPILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMN 235
+ V++S ++GE +P+LK +K + VF T G G
Sbjct: 254 SY---VDESMISGEPVPVLK-------------SKGDEVFGATINNTGVLKIRATRVGGE 297
Query: 236 TEIGKIQKQIHDASLEESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDG 295
T + +I K + DA S P+++ D+ + LV + F+ W +
Sbjct: 298 TLLAQIVKLVEDAM--GSKPPIQRLADKVVAYFIPTVLLVAI-------SAFIYWYFIAH 348
Query: 296 WPANVQFSFEKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVE 355
P + F +A+ V A P T L +G K A+ +++ ++E
Sbjct: 349 AP---------LLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALE 399
Query: 356 TLGCTTVICSDKTGTLTTNQMSVTEFFTL 384
T + DKTGTLT + VT+ L
Sbjct: 400 VAEKVTAVIFDKTGTLTKGKPEVTDLVPL 428
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 34/179 (18%)
Query: 617 VGVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSF 676
V ++ + DP + + I + + +GIE++++TGD+K TAEA+ + +
Sbjct: 546 VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGI------------ 593
Query: 677 TGKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPAL 736
KV + P K IV LK+ G +VAM GDGVNDAPAL
Sbjct: 594 ---------------------KKVVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPAL 632
Query: 737 KLADIGVAMGITGTEVAKEASDMVLADDNFGSIVSAVAEGRSIYNNMKAFIRYMISSNV 795
ADIG+AMG TGT+VA E++ + L + I A S +N++ + + NV
Sbjct: 633 AKADIGIAMG-TGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIYNV 690
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 115/262 (43%), Gaps = 33/262 (12%)
Query: 122 ALEALKKIQCESGKVLRDGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLRV 181
A+ AL K+ ES +++ ++ + GD++ + G+K+P D V ++ V
Sbjct: 215 AIRALLKLVPESAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF---V 271
Query: 182 EQSSLTGEAMPILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGKI 241
++S +TGE +P+ K E AK V T GS V ++ G +T + +I
Sbjct: 272 DESMVTGEPIPVAK----------EASAK---VIGATINQTGSFVMKALHVGSDTMLARI 318
Query: 242 QKQIHDASLEESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMNYRNFLSWDVVDGWPANVQ 301
+ + DA + S P+++ D A+ LV ++ +F+ W ++ PA
Sbjct: 319 VQMVSDA--QRSRAPIQRLADTVSGWFVPAVILVAVL-------SFIVWALLGPQPA--- 366
Query: 302 FSFEKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTT 361
+Y AV++ + A P L + +G K AQ +++ ++E +
Sbjct: 367 -----LSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEKVN 421
Query: 362 VICSDKTGTLTTNQMSVTEFFT 383
+ DKTGTLT +T T
Sbjct: 422 TLVVDKTGTLTEGHPKLTRIVT 443
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 79.7 bits (195), Expect = 8e-15, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 81/160 (50%), Gaps = 35/160 (21%)
Query: 618 GVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFT 677
G++ + D + A+ + + GI+V ITGDN +AEAI R++ L DL
Sbjct: 136 GIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL-----DL------ 184
Query: 678 GKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALK 737
V + P K E V+ L + EVVA GDG+NDAPAL
Sbjct: 185 ----------------------VIAEVLPHQKSEEVKKL-QAKEVVAFVGDGINDAPALA 221
Query: 738 LADIGVAMGITGTEVAKEASDMVLADDNFGSIVSAVAEGR 777
AD+G+A+G +G++VA E+ D+VL D+ +V+A+ R
Sbjct: 222 QADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSR 260
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 35/167 (20%)
Query: 618 GVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFT 677
G++ + D + A+ + + GI+V +ITGDN +AEAI R++ L DL
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-----DL------ 204
Query: 678 GKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALK 737
V + P K E V+ L + EVVA GDG+NDAPAL
Sbjct: 205 ----------------------VIAEVLPHQKSEEVKKL-QAKEVVAFVGDGINDAPALA 241
Query: 738 LADIGVAMGITGTEVAKEASDMVLADDNFGSIVSAVAEGRSIYNNMK 784
AD+G+A+G +G++VA E+ D+VL D+ +V+A+ R + +K
Sbjct: 242 QADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 337 GTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTEFFTL 384
G+RK A+ +++ ++E T + DKTGTLT + VT+ L
Sbjct: 9 GSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPL 56
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 35/167 (20%)
Query: 618 GVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFT 677
G++ + D + A+ + + GI+V +ITGDN +AEAI R++ L DL
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-----DL------ 204
Query: 678 GKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALK 737
V + P K E V+ L + EVVA GDG+NDAPAL
Sbjct: 205 ----------------------VIAEVLPHQKSEEVKKL-QAKEVVAFVGDGINDAPALA 241
Query: 738 LADIGVAMGITGTEVAKEASDMVLADDNFGSIVSAVAEGRSIYNNMK 784
AD+G+A+G +G++VA E+ D+VL D+ +V+A+ R + +K
Sbjct: 242 QADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 337 GTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTEFFTL 384
G+RK A+ +++ ++E T + DKTGTLT + VT+ L
Sbjct: 9 GSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPL 56
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 66.6 bits (161), Expect = 6e-11, Method: Composition-based stats.
Identities = 40/43 (93%), Positives = 42/43 (97%)
Query: 309 YYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKL 351
YYFKIAVALAVAAIPEGLPAVITTCLALGTR+MA+KNAIVR L
Sbjct: 6 YYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 35/167 (20%)
Query: 618 GVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFT 677
GV+ L D R +AI + GI+ M++TGDN+ A+ + ++ L
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL------------- 183
Query: 678 GKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALK 737
F+ P K E V+ +++ V AM GDGVNDAPAL
Sbjct: 184 --------------------DDYFAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPALA 222
Query: 738 LADIGVAMGITGTEVAKEASDMVLADDNFGSIVSAVAEGRSIYNNMK 784
AD+G+A+G GT+VA E +D+VL ++ + + V R Y+ ++
Sbjct: 223 QADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKLE 268
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 35/166 (21%)
Query: 618 GVVGLRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFT 677
GV+ L D R +AI + GI+ M++TGDN+ A+ + ++ L
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL------------- 183
Query: 678 GKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALK 737
F+ P K E V+ +++ V AM GDGVNDAPAL
Sbjct: 184 --------------------DDYFAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPALA 222
Query: 738 LADIGVAMGITGTEVAKEASDMVLADDNFGSIVSAVAEGRSIYNNM 783
AD+G+A+G GT+VA E +D+VL ++ + + V R Y+
Sbjct: 223 QADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKF 267
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 63.2 bits (152), Expect = 7e-10, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 43/141 (30%)
Query: 633 AIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFTGKEFMALSSTQQIEA 692
A+ + + GI+V ITGDN +AEAI R++ L DL
Sbjct: 30 AVQELKRXGIKVGXITGDNWRSAEAISRELNL-----DL--------------------- 63
Query: 693 LSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTEV 752
V + P K E V+ L + EVVA GDG+NDAPAL AD+G+A+G
Sbjct: 64 -------VIAEVLPHQKSEEVKKL-QAKEVVAFVGDGINDAPALAQADLGIAVG------ 109
Query: 753 AKEASDMVLADDNFGSIVSAV 773
+ D+VL D+ +V+A+
Sbjct: 110 ---SGDIVLIRDDLRDVVAAI 127
>pdb|2VOY|B Chain B, Cryoem Model Of Copa, The Copper Transporting Atpase
From Archaeoglobus Fulgidus
Length = 42
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/42 (66%), Positives = 36/42 (85%)
Query: 40 YGWNELDKEKGKPLWQLVLEQFDDTLVKILLVAAFISFILAY 81
YG NEL E+GK LW+LV+EQF+D LV+ILL+AA ISF+LA+
Sbjct: 1 YGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAW 42
>pdb|2VOY|K Chain K, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 32
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/32 (84%), Positives = 30/32 (93%)
Query: 775 EGRSIYNNMKAFIRYMISSNVGEVISIFLTAA 806
EGR+IYNNMK FIRY+ISSNVGEV+ IFLTAA
Sbjct: 1 EGRAIYNNMKQFIRYLISSNVGEVVCIFLTAA 32
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 77/160 (48%), Gaps = 34/160 (21%)
Query: 622 LRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFTGKEF 681
+ D PR + ++ + G+++++++GD + + + +++ + +E+
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI--------------QEY 178
Query: 682 MALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADI 741
+S P K I+ LK+ G V M GDGVNDA AL LAD+
Sbjct: 179 -------------------YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADV 219
Query: 742 GVAMGITGTEVAKEASDMVLADDNFGSIVSAVAEGRSIYN 781
VAMG G +++K +D++L ++ G+++ + + + N
Sbjct: 220 SVAMG-NGVDISKNVADIILVSNDIGTLLGLIKNRKRLSN 258
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 53.1 bits (126), Expect = 9e-07, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 77/160 (48%), Gaps = 34/160 (21%)
Query: 622 LRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFTGKEF 681
+ D PR + ++ + G+++++++GD + + + +++ + +E+
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI--------------QEY 178
Query: 682 MALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADI 741
+S P K I+ LK+ G V M GDGVNDA AL LAD+
Sbjct: 179 -------------------YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADV 219
Query: 742 GVAMGITGTEVAKEASDMVLADDNFGSIVSAVAEGRSIYN 781
VAMG G +++K +D++L ++ G+++ + + + N
Sbjct: 220 SVAMG-NGVDISKNVADIILVSNDIGTLLGLIKNRKRLSN 258
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 340 KMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTEFFTLGRKTTISRIFHVEGT 399
KM K I++ E + I DKTGTLT VT+F +G +++ VE
Sbjct: 8 KMLHKGMIIKNSNVYEKIKEIDTIIFDKTGTLTYGTPIVTQF--IGDSLSLAYAASVEAL 65
Query: 400 TYDPKDGGIVDW 411
+ P IV +
Sbjct: 66 SSHPIAKAIVKY 77
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 53.1 bits (126), Expect = 9e-07, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 77/160 (48%), Gaps = 34/160 (21%)
Query: 622 LRDPPRGGVDKAIDDCRGAGIEVMVITGDNKSTAEAICRQIKLFSGNEDLTGRSFTGKEF 681
+ D PR + ++ + G+++++++GD + + + +++ + +E+
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI--------------QEY 178
Query: 682 MALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALKLADI 741
+S P K I+ LK+ G V M GDGVNDA AL LAD+
Sbjct: 179 -------------------YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADV 219
Query: 742 GVAMGITGTEVAKEASDMVLADDNFGSIVSAVAEGRSIYN 781
VAMG G +++K +D++L ++ G+++ + + + N
Sbjct: 220 SVAMG-NGVDISKNVADIILVSNDIGTLLGLIKNRKRLSN 258
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 498 RSKRVATLEFDRIRKSMSVIVREPTGHNQLLVKGSVESLLERSSHVQLADGSVVPLDEPC 557
R +++ + FD R+ MSV+V E T H+QL+ KG+++ +L S V+ +G +VPLD+
Sbjct: 55 RWQKIDEIPFDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQVR-HNGEIVPLDDIM 113
Query: 558 WQLMLSRHLEMSSKGLRCLGMAYKDELGEFSDYYSESHPAHKKLLDPSCYSTIESDLVFV 617
+ + ++ +GLR + +A K DY ESDL+
Sbjct: 114 LRKIKRVTDTLNRQGLRVVAVATKYLPAREGDYQRAD----------------ESDLILE 157
Query: 618 GVVGLRD 624
G + D
Sbjct: 158 GYIAFLD 164
>pdb|2VOY|G Chain G, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 36
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 251 EESDTPLRKKLDEFGNRLTTAIGLVCLVVWIMN 283
E+ TPL++KLDEFG +L+ I L+C+ VW++N
Sbjct: 1 EQDKTPLQQKLDEFGEQLSKVISLICVAVWLIN 33
>pdb|2VOY|L Chain L, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 21
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 815 PVQLLWVNLVTDGPPATALGF 835
PVQLLWVNLVTDG PATALGF
Sbjct: 1 PVQLLWVNLVTDGLPATALGF 21
>pdb|1Q3I|A Chain A, Crystal Structure Of Na,K-Atpase N-Domain
Length = 214
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 8/140 (5%)
Query: 441 LFRATGLPTEAALKVLVEKMGFPDVKGRNKISDTQLAANYLIDSSTVRLGCCEWWTKRSK 500
L R GL A K E + V R+ D +A L+ + G R+
Sbjct: 37 LSRIAGLCNRAVFKAGQENIS---VSKRDTAGDASESA--LLKCIELSCGSVRKMRDRNP 91
Query: 501 RVATLEFDRIRK-SMSVIVREPTGHNQLLV-KGSVESLLERSSHVQLADGSVVPLDEPCW 558
+VA + F+ K +S+ RE + +LV KG+ E +L+R S + L G +PLD+
Sbjct: 92 KVAEISFNSTNKYQLSIHEREDNPQSHVLVMKGAPERILDRCSSI-LVQGKEIPLDKEMQ 150
Query: 559 QLMLSRHLEMSSKGLRCLGM 578
+ +LE+ G R LG
Sbjct: 151 DAFQNAYLELGGLGERVLGF 170
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 497 KRSKRVATLEFDRIRKSMSVIVREPTG---HNQLLVKGSVESLLERSSHVQLADGSVVPL 553
++ ++ + F+ K I + P + L++KG+ E +L+R S + L G PL
Sbjct: 90 EKYTKIVEIPFNSTNKYQLSIHKNPNASEPKHLLVMKGAPERILDRCSSI-LLHGKEQPL 148
Query: 554 DEPCWQLMLSRHLEMSSKGLRCLGMAY---KDELGEFSDYYSESHPAHKKLLDPSCYSTI 610
DE + +LE+ G R LG + DE +F + + D +
Sbjct: 149 DEELKDAFQNAYLELGGLGERVLGFCHLLLPDE--QFPEGFQ---------FDTDEVNFP 197
Query: 611 ESDLVFVGVVGLRDPP 626
+L FVG++ + DPP
Sbjct: 198 VDNLCFVGLISMIDPP 213
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 16/95 (16%)
Query: 154 GDIVELGVGDKVPADMRVAALKTSSLRVEQSSLTGEAMPILKGTSPVFLDDCELQAKENM 213
GDI+++ G K P D RV ++ S+ V++S +TGEAMP+ K +
Sbjct: 45 GDIIKVVPGGKFPVDGRV--IEGHSM-VDESLITGEAMPVAKKPG-------------ST 88
Query: 214 VFAGTTVVNGSCVCIVINTGMNTEIGKIQKQIHDA 248
V AG+ NGS + + G +T + +I K + +A
Sbjct: 89 VIAGSINQNGSLLICATHVGADTTLSQIVKLVEEA 123
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 124 EALKKI---QCESGKVLRDGYLVPDLPAIGLVPGDIVELGVGDKVPADMRVAALKTSSLR 180
EA+KK+ Q ++ V+RDG + +P + GDIV + G+K+P D V ++
Sbjct: 1 EAIKKLVGLQAKTAVVIRDGKEIA-VPVEEVAVGDIVIVRPGEKIPVDGVVVEGES---Y 56
Query: 181 VEQSSLTGEAMPILKGTSPVFLDDCELQAKENMVFAGTTVVNGSCVCIVINTGMNTEIGK 240
V++S ++GE +P+LK +K + VF T G G T + +
Sbjct: 57 VDESMISGEPVPVLK-------------SKGDEVFGATINNTGVLKIRATRVGGETLLAQ 103
Query: 241 IQKQIHDA 248
I K + DA
Sbjct: 104 IVKLVEDA 111
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With Dioctylamine
Length = 302
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 8 AWSWTVEQCLKEYNVKLDKGLSSREVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVK 67
W T+ + EY+V + GL+ E + ++ ++E+D + K + E+FD+ + +
Sbjct: 82 GWGSTMRHAVAEYDVNV-IGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDR 140
Query: 68 ILLVAAFISFILAYFHSSDSGDSGFEDY 95
I+ + AF F + +GD+GFE Y
Sbjct: 141 IVSLGAFEHF------ADGAGDAGFERY 162
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 721 EVVAMTGDGVNDAPALKLADIGVAMGITGTEVAKEASDMVLADDNFG 767
EV+A+ GDG ND +K A +GVAMG V K A + L +D G
Sbjct: 215 EVIAI-GDGYNDLSMIKFAGMGVAMGNAQEPVKKAADYITLTNDEDG 260
>pdb|1WMA|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Hydroxy-pp
pdb|3BHI|A Chain A, Crystal Structure Of Human Carbonyl Reductase 1 In Complex
With Nadp
pdb|3BHJ|A Chain A, Crystal Structure Of Human Carbonyl Reductase 1 In Complex
With Glutathione
pdb|3BHM|A Chain A, Crystal Structure Of Human Carbonyl Reductase 1 In Complex
With S-Hydroxymethylglutathione
Length = 276
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 640 AGIEVMVITGDNKSTAEAICRQI-KLFSGNEDLTGRSFTGKEFMALSSTQQIEA 692
+GI V ++TG NK AI R + +LFSG+ LT R T + ++ QQ++A
Sbjct: 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQ----AAVQQLQA 51
>pdb|2PFG|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Bigf2
Length = 276
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 640 AGIEVMVITGDNKSTAEAICRQI-KLFSGNEDLTGRSFTGKEFMALSSTQQIEA 692
+GI V ++TG NK AI R + +LFSG+ LT R T + ++ QQ++A
Sbjct: 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQ----AAVQQLQA 51
>pdb|3NIW|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Thetaiotaomicron
Length = 279
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 721 EVVAMTGDGVNDAPALKLADIGVAMGITGTEVAKEASDMVLADDNFG 767
EV+A+ GDG ND +K A GVA G V K A + L +D G
Sbjct: 215 EVIAI-GDGYNDLSXIKFAGXGVAXGNAQEPVKKAADYITLTNDEDG 260
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 22/41 (53%)
Query: 727 GDGVNDAPALKLADIGVAMGITGTEVAKEASDMVLADDNFG 767
GDG ND P LK A IGVAMG +V A + DN G
Sbjct: 217 GDGGNDIPMLKAAGIGVAMGNASEKVQSVADFVTDTVDNSG 257
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 711 EIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTEVAKEASDMVLA 762
EI+R E GDG ND L+ A IGVAMG E K A+D V A
Sbjct: 194 EIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMG-QAKEDVKAAADYVTA 244
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 711 EIVRMLKEMGEVVAMTGDGVNDAPALKLADIGVAMGITGTEVAKEASDMVLA 762
EI+R E GDG ND L+ A IGVAMG E K A+D V A
Sbjct: 194 EIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMG-QAKEDVKAAADYVTA 244
>pdb|1NRW|A Chain A, The Structure Of A Haloacid Dehalogenase-Like Hydrolase
From B. Subtilis
Length = 288
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 694 SKHGGKVFSRAEPRHKQEIVRMLKEMG---EVVAMTGDGVNDAPALKLADIGVAMGITGT 750
++H ++ SR + Q + R+ K++ E A GD +ND L+ A GVA G
Sbjct: 204 AEHNFELSSRKASK-GQALKRLAKQLNIPLEETAAVGDSLNDKSXLEAAGKGVAXGNARE 262
Query: 751 EVAKEASDMVLADDNFG 767
++ A + L +D G
Sbjct: 263 DIKSIADAVTLTNDEHG 279
>pdb|1RFB|A Chain A, Crystal Structure Of Recombinant Bovine Interferon-Gamma
At 3.0 Angstroms Resolution
pdb|1RFB|B Chain B, Crystal Structure Of Recombinant Bovine Interferon-Gamma
At 3.0 Angstroms Resolution
Length = 119
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 31 REVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVKILLVAAFISFILAYFHS 84
RE+E +E + + D KG PL+ +L+ + D K ++ + +SF F +
Sbjct: 6 REIENLKEYFNASSPDVAKGGPLFSEILKNWKDESDKKIIQSQIVSFYFKLFEN 59
>pdb|1D9C|A Chain A, Bovine Interferon-Gamma At 2.0 Angstroms
pdb|1D9C|B Chain B, Bovine Interferon-Gamma At 2.0 Angstroms
pdb|1D9G|A Chain A, Bovine Interferon-Gamma At 2.9 Angstroms
pdb|1D9G|B Chain B, Bovine Interferon-Gamma At 2.9 Angstroms
Length = 121
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 31 REVEKRRERYGWNELDKEKGKPLWQLVLEQFDDTLVKILLVAAFISFILAYFHS 84
RE+E +E + + D KG PL+ +L+ + D K ++ + +SF F +
Sbjct: 6 REIENLKEYFNASSPDVAKGGPLFSEILKNWKDESDKKIIQSQIVSFYFKLFEN 59
>pdb|4B6J|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
Length = 201
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 678 GKEFMALSSTQQIEALSKHGGKVFSRAEPRHKQEIVRMLKEMGEVVAMTGDGVNDAPALK 737
G EFMA A+ + G R R K E ++ ++ G ++AM GDG DA +
Sbjct: 116 GDEFMA------NRAIFEDGKFQGIRLRFRDKGEFLKRFRD-GFILAM-GDGYADAKMFE 167
Query: 738 LADIGVAMG 746
AD+G+A+G
Sbjct: 168 RADMGIAVG 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,462,614
Number of Sequences: 62578
Number of extensions: 1274357
Number of successful extensions: 3101
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2929
Number of HSP's gapped (non-prelim): 85
length of query: 1051
length of database: 14,973,337
effective HSP length: 109
effective length of query: 942
effective length of database: 8,152,335
effective search space: 7679499570
effective search space used: 7679499570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)