BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001569
(1051 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 970 QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKR 1029
+ ++ + PL L I+ ++ YY+ +EA D+ + NAE Y+GR + + + R
Sbjct: 44 KNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCR 103
Query: 1030 L 1030
L
Sbjct: 104 L 104
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1040
P+ L+ I+ RLEN YY D M SN Y D+ + L L + LS
Sbjct: 56 PMDLNTIKKRLENKYYEKASECIEDFNTMFSNCYLYNKTGDDIVVMAQALEKLFMQKLSQ 115
Query: 1041 LKAPQ 1045
+ PQ
Sbjct: 116 M--PQ 118
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 37/62 (59%)
Query: 973 NFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1032
++ + +P+SL I+++L+N Y L+ ++ D+ +M NA+ Y N+ + ++ +L
Sbjct: 55 DYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQ 114
Query: 1033 LV 1034
++
Sbjct: 115 VM 116
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain
Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain
Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain
Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt In
Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt In
Complex With The Inhibitor Jq1
Length = 119
Score = 34.3 bits (77), Expect = 0.40, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1040
P+ L+ I+ RLEN YY D M SN Y D+ + L L + LS
Sbjct: 55 PMDLNTIKKRLENKYYAKASECIEDFNTMFSNCYLYNKPGDDIVLMAQALEKLFMQKLSQ 114
Query: 1041 LKAPQ 1045
+ PQ
Sbjct: 115 M--PQ 117
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1040
P+ + I+ RLENNYY D M +N Y D+ + L + + ++S
Sbjct: 74 PMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVAS 133
Query: 1041 LKAPQ 1045
+ PQ
Sbjct: 134 M--PQ 136
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4-
Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4-
Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4-
Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 1-(2-Methyl-1,2,3,
4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 1-(2-Methyl-1,2,3,
4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 1-(2-Methyl-1,2,3,
4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4-
Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4-
Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4-
Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5 Ethyl-3-Methyl-
4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5 Ethyl-3-Methyl-
4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5 Ethyl-3-Methyl-
4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 33.5 bits (75), Expect = 0.69, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1040
P+ + I+ RLENNYY D M +N Y D+ + L + + ++S
Sbjct: 74 PMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVAS 133
Query: 1041 LKAPQ 1045
+ PQ
Sbjct: 134 M--PQ 136
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 33.1 bits (74), Expect = 0.87, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1033
P+ L ++ ++EN YR + D+ +M SN Y + D+ ++L D+
Sbjct: 46 PMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDV 98
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 33.1 bits (74), Expect = 0.89, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1033
P+ L ++ ++EN YR + D+ +M SN Y + D+ ++L D+
Sbjct: 50 PMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDV 102
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2 In
Complex With The Inhibitor Jq1
Length = 114
Score = 33.1 bits (74), Expect = 0.92, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1033
P+ L ++ ++EN YR + D+ +M SN Y + D+ ++L D+
Sbjct: 52 PMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDV 104
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 32.7 bits (73), Expect = 0.98, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1040
P+ + I+ RLENNYY + D M +N Y D+ + L L + ++
Sbjct: 83 PMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINE 142
Query: 1041 L 1041
L
Sbjct: 143 L 143
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In Complex
With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1040
P+ + I+ RLENNYY + D M +N Y D+ + L L + ++
Sbjct: 67 PMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINE 126
Query: 1041 L 1041
L
Sbjct: 127 L 127
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Quinazoline Ligand
Length = 127
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1040
P+ + I+ RLENNYY + D M +N Y D+ + L L + ++
Sbjct: 63 PMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINE 122
Query: 1041 L 1041
L
Sbjct: 123 L 123
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain
Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In
Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1040
P+ + I+ RLENNYY + D M +N Y D+ + L L + ++
Sbjct: 63 PMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINE 122
Query: 1041 L 1041
L
Sbjct: 123 L 123
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1033
P+ + I+S+LE+ YR + D+ +M SN Y + ++ ++L D+
Sbjct: 54 PMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDV 106
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRL 1030
P+ L ++ +LE+N Y+ +E +D ++ +N Y G NT RL
Sbjct: 53 PMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRL 102
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1033
P+ + I+S+LE YR + D+ +M SN Y + ++ ++L D+
Sbjct: 46 PMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDV 98
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1040
P+ + I+ RLENNYY D M +N Y D+ + L + + ++
Sbjct: 61 PMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQ 120
Query: 1041 LKAPQ 1045
+ PQ
Sbjct: 121 M--PQ 123
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain
Containing Protein 3
Length = 138
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1040
P+ + I+ RLENNYY D M +N Y D+ + L + + ++
Sbjct: 63 PMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQ 122
Query: 1041 LKAPQ 1045
+ PQ
Sbjct: 123 M--PQ 125
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein 3
(Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein 3
(Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3 In
Complex With The Inhibitor Jq1
Length = 123
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1040
P+ + I+ RLENNYY D M +N Y D+ + L + + ++
Sbjct: 59 PMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQ 118
Query: 1041 LKAPQ 1045
+ PQ
Sbjct: 119 M--PQ 121
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1033
P+ + I+S+LE YR + D+ +M SN Y + ++ ++L D+
Sbjct: 65 PMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDV 117
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human Bromodomain
Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDL 1033
P+ + I+S+LE YR + D+ +M SN Y + ++ ++L D+
Sbjct: 67 PMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDV 119
>pdb|3D5L|A Chain A, Crystal Structure Of Regulatory Protein Recx
pdb|3D5L|B Chain B, Crystal Structure Of Regulatory Protein Recx
Length = 221
Score = 30.0 bits (66), Expect = 7.4, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 242 RKHSKGKGISLDDSEDVTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLV 301
R+H + KGI D +D TPE ++L LKL R N+ E R K Q +
Sbjct: 133 RQHLRQKGIGESDIDDALTQFTPEVQAELA-KKLALKLFRRYRNQPE--RRREQKVQQGL 189
Query: 302 SVIGTSSEAHQ 312
+ G SS ++
Sbjct: 190 TTKGFSSSVYE 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.129 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,145,770
Number of Sequences: 62578
Number of extensions: 1357495
Number of successful extensions: 2402
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2378
Number of HSP's gapped (non-prelim): 34
length of query: 1051
length of database: 14,973,337
effective HSP length: 109
effective length of query: 942
effective length of database: 8,152,335
effective search space: 7679499570
effective search space used: 7679499570
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)