BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001569
(1051 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q921C3|BRWD1_MOUSE Bromodomain and WD repeat-containing protein 1 OS=Mus musculus
GN=Brwd1 PE=1 SV=2
Length = 2304
Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 152/331 (45%), Gaps = 48/331 (14%)
Query: 741 WLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYIN-------YSGSREVGPWITVKGNIRAV 793
W+ +T + S ++PQ+GDEV+Y RQGH+ YI Y + PW K ++R
Sbjct: 947 WITDTTLRK-SPFVPQMGDEVMYFRQGHEAYIEAVRRNNIYELNPHKEPW--RKMDLRDQ 1003
Query: 794 EFCKVESLEYATASGSGDSCCKMTLKFIDP-TSSVSNMTFRLTLPEVTGFPDFLVERTRF 852
E K+ L Y G CC + L FIDP T +++ +F + ++ DFLV R +
Sbjct: 1004 ELVKIVGLRYEV--GPPTLCC-LKLAFIDPATGRLTDKSFSIRYHDMPDVIDFLVLRQFY 1060
Query: 853 DAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPT 912
D A QRNW D+ + S D +WW G VLS +P ++PDS ++ Y V++ T
Sbjct: 1061 DEARQRNWQPCDRFR------SIIDDAWWFGTVLSQEPYQPQYPDSHFQCYIVRWDN--T 1112
Query: 913 ETHLHSPWELFDSDTQWEQPR-------IDDDNRNKLLSAFAKLEQSANRVQDQ------ 959
ET SPW++ + P + D KLL + E R +D+
Sbjct: 1113 ETEKLSPWDMEPIPDNVDPPEELGASISVTSDELEKLLYKPQEGEW-GQRSRDEECDRII 1171
Query: 960 YGVQKLKQVSQKTNFTN-----RFP-------VPLSLDVIQSRLENNYYRGLEAVKHDIA 1007
G+ +L + F +P P L I+ RL N +YR L A+ ++
Sbjct: 1172 SGIDQLLNLDIAAAFAGPVDLCTYPKYCTVVAYPTDLYTIRMRLVNRFYRRLSALIWEVR 1231
Query: 1008 VMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1038
+ NA ++ + ++ K+++D + + +
Sbjct: 1232 YIEHNARTFNEPESVIARSAKKITDQLLKFI 1262
>sp|A2AHJ4|BRWD3_MOUSE Bromodomain and WD repeat-containing protein 3 OS=Mus musculus
GN=Brwd3 PE=2 SV=1
Length = 1799
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 156/338 (46%), Gaps = 57/338 (16%)
Query: 741 WL----MLSTHEEGSRYIPQLGDEVVYLRQGHQEYIN-------YSGSREVGPWITVKGN 789
WL +L T S ++PQ+GDE++Y RQGH+ Y+ YS + + PW K +
Sbjct: 920 WLAPQWILDTIPRRSPFVPQMGDELIYFRQGHEAYVRAVRKSKIYSVNLQKQPW--NKMD 977
Query: 790 IRAVEFCKVESLEYATASGSGDSCCKMTLKFIDPTS-SVSNMTFRLTLPEVTGFPDFLVE 848
+R EF K+ ++Y G CC + L F+DP S ++ +F + ++ DFLV
Sbjct: 978 LREQEFVKIVGIKYEI--GPPTLCC-LKLAFLDPISGKMTGESFSIKYHDMPDVIDFLVL 1034
Query: 849 RTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYK 908
++ A +RNW D+ + S D +WW G V S +P E+PDS ++ Y+V +
Sbjct: 1035 HQFYNEAKERNWQIGDRFR------SIIDDAWWFGTVESQQPFQPEYPDSSFQCYSVHWD 1088
Query: 909 TEPTETHLHSPWEL--------FDSDTQWEQPRIDDDNRNKLL--------SAFAKLEQS 952
E SPW++ F + P + + LL A ++ E+
Sbjct: 1089 N--NEREKMSPWDMEPIPDGTAFPDEVGAGIP-VSQEELTALLYKPQEGEWGAHSRDEEC 1145
Query: 953 ANRVQDQYGVQKLKQVSQKTNFT-----NRFPV-------PLSLDVIQSRLENNYYRGLE 1000
+Q G+ L + + F + +P+ P L+ I+ RLEN +YR +
Sbjct: 1146 ERVIQ---GINNLLSLDFASPFAVPVDLSAYPLYCTVVAYPTDLNTIKQRLENRFYRRIS 1202
Query: 1001 AVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1038
A+ ++ + NA ++ ++ + K ++D++ R +
Sbjct: 1203 ALMWEVRYIEHNARTFNEPDSPIVKAAKIVTDVLLRFI 1240
>sp|Q6RI45|BRWD3_HUMAN Bromodomain and WD repeat-containing protein 3 OS=Homo sapiens
GN=BRWD3 PE=1 SV=2
Length = 1802
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 154/332 (46%), Gaps = 53/332 (15%)
Query: 743 MLSTHEEGSRYIPQLGDEVVYLRQGHQEYIN-------YSGSREVGPWITVKGNIRAVEF 795
+L T S ++PQ+GDE++Y RQGH+ Y+ YS + + PW K ++R EF
Sbjct: 928 ILDTIPRRSPFVPQMGDELIYFRQGHEAYVRAVRKSKIYSVNLQKQPW--NKMDLREQEF 985
Query: 796 CKVESLEYATASGSGDSCCKMTLKFIDPTS-SVSNMTFRLTLPEVTGFPDFLVERTRFDA 854
K+ ++Y G CC + L F+DP S ++ +F + ++ DFLV ++
Sbjct: 986 VKIVGIKYEV--GPPTLCC-LKLAFLDPISGKMTGESFSIKYHDMPDVIDFLVLHQFYNE 1042
Query: 855 AIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTET 914
A +RNW D+ + S D +WW G V S +P E+PDS ++ Y+V + E
Sbjct: 1043 AKERNWQIGDRFR------SIIDDAWWFGTVESQQPFQPEYPDSSFQCYSVHWDN--NER 1094
Query: 915 HLHSPWEL--------FDSDTQWEQPRIDDDNRNKLL--------SAFAKLEQSANRVQD 958
SPW++ F + P + + LL A ++ E+ +Q
Sbjct: 1095 EKMSPWDMEPIPEGTAFPDEVGAGVP-VSQEELTALLYKPQEGEWGAHSRDEECERVIQ- 1152
Query: 959 QYGVQKLKQVSQKTNFT-----NRFPV-------PLSLDVIQSRLENNYYRGLEAVKHDI 1006
G+ L + + F + +P+ P L+ I+ RLEN +YR + A+ ++
Sbjct: 1153 --GINHLLSLDFASPFAVPVDLSAYPLYCTVVAYPTDLNTIRRRLENRFYRRISALMWEV 1210
Query: 1007 AVMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1038
+ NA ++ ++ + K ++D++ R +
Sbjct: 1211 RYIEHNARTFNEPDSPIVKAAKIVTDVLLRFI 1242
>sp|Q9NSI6|BRWD1_HUMAN Bromodomain and WD repeat-containing protein 1 OS=Homo sapiens
GN=BRWD1 PE=1 SV=4
Length = 2320
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 151/330 (45%), Gaps = 46/330 (13%)
Query: 741 WLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYIN-------YSGSREVGPWITVKGNIRAV 793
W+ +T + S ++PQ+GDEV+Y RQGH+ YI Y + PW K ++R
Sbjct: 946 WITDTTLRK-SPFVPQMGDEVIYFRQGHEAYIEAVRRNNIYELNPNKEPW--RKMDLRDQ 1002
Query: 794 EFCKVESLEYATASGSGDSCCKMTLKFIDP-TSSVSNMTFRLTLPEVTGFPDFLVERTRF 852
E K+ + Y G CC + L FIDP T + + +F + ++ DFLV R +
Sbjct: 1003 ELVKIVGIRYEV--GPPTLCC-LKLAFIDPATGKLMDKSFSIRYHDMPDVIDFLVLRQFY 1059
Query: 853 DAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPT 912
D A QRNW D+ + S D +WW G VLS +P ++PDS ++ Y V++ T
Sbjct: 1060 DEARQRNWQSCDRFR------SIIDDAWWFGTVLSQEPYQPQYPDSHFQCYIVRWDN--T 1111
Query: 913 ETHLHSPWELFDSDTQWEQPR-------IDDDNRNKLL---SAFAKLEQSANRVQDQY-- 960
E SPW++ + P + D KLL A ++S + D+
Sbjct: 1112 EIEKLSPWDMEPIPDNVDPPEELGASISVTTDELEKLLYKPQAGEWGQKSRDEECDRIIS 1171
Query: 961 GVQKLKQVSQKTNFTN-----RFP-------VPLSLDVIQSRLENNYYRGLEAVKHDIAV 1008
G+ +L + F +P P L I+ RL N +YR L A+ ++
Sbjct: 1172 GIDQLLNLDIAAAFAGPVDLCTYPKYCTVVAYPTDLYTIRMRLVNRFYRRLSALVWEVRY 1231
Query: 1009 MLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1038
+ NA ++ + ++ K+++D + + +
Sbjct: 1232 IEHNARTFNEPESVIARSAKKITDQLLKFI 1261
>sp|Q8VDD9|PHIP_MOUSE PH-interacting protein OS=Mus musculus GN=Phip PE=1 SV=2
Length = 1821
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 140/315 (44%), Gaps = 47/315 (14%)
Query: 753 YIPQLGDEVVYLRQGHQEYIN-------YSGSREVGPWITVKGNIRAVEFCKVESLEYAT 805
++PQ+GDEV Y RQGH+ Y+ YS + + PW K +R E K+ ++Y
Sbjct: 956 FVPQMGDEVYYFRQGHEAYVEMARKNKIYSINPKKQPW--HKMELREQELMKIVGIKYEV 1013
Query: 806 ASGSGDSCCKMTLKFIDP-TSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRD 864
G CC + L F+DP T ++ +F + ++ DFLV R +FD A R W D
Sbjct: 1014 --GLPTLCC-LKLAFLDPDTGKLTGGSFTMKYHDMPDVIDFLVLRQQFDDAKYRPWNIGD 1070
Query: 865 KCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWEL-- 922
+ + S D +WW G + S +P E+PDS ++ Y V + TE SPW++
Sbjct: 1071 RFR------SVIDDAWWFGTIESQEPLQPEYPDSLFQCYNVCWDNGDTEKM--SPWDMEL 1122
Query: 923 ------FDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQY-----GVQKLKQVSQK 971
F + P D + R+ + E AN ++ G+ +L +
Sbjct: 1123 IPNNAVFPEELGTSVPLTDVECRSLIYKPLDG-EWGANPRDEECERIVGGINQLMTLDIA 1181
Query: 972 TNFT-----NRFPV-------PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1019
+ F +P+ P L I+ RLEN +YR ++ ++ + N ++
Sbjct: 1182 SAFVAPVDLQAYPMYCTVVAYPTDLSTIKQRLENRFYRRFSSLMWEVRYIEHNTRTFNEP 1241
Query: 1020 NTDLSTKIKRLSDLV 1034
+ + K ++DL+
Sbjct: 1242 GSPIVKSAKFVTDLL 1256
>sp|Q8WWQ0|PHIP_HUMAN PH-interacting protein OS=Homo sapiens GN=PHIP PE=1 SV=2
Length = 1821
Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 140/316 (44%), Gaps = 49/316 (15%)
Query: 753 YIPQLGDEVVYLRQGHQEYIN-------YSGSREVGPWITVKGNIRAVEFCKVESLEYAT 805
++PQ+GDEV Y RQGH+ Y+ YS + + PW K +R E K+ ++Y
Sbjct: 956 FVPQMGDEVYYFRQGHEAYVEMARKNKIYSINPKKQPW--HKMELREQELMKIVGIKYEV 1013
Query: 806 ASGSGDSCCKMTLKFIDP-TSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRD 864
G CC + L F+DP T ++ +F + ++ DFLV R +FD A R W D
Sbjct: 1014 --GLPTLCC-LKLAFLDPDTGKLTGGSFTMKYHDMPDVIDFLVLRQQFDDAKYRRWNIGD 1070
Query: 865 KCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWEL-- 922
+ + S D +WW G + S +P E+PDS ++ Y V + TE SPW++
Sbjct: 1071 RFR------SVIDDAWWFGTIESQEPLQLEYPDSLFQCYNVCWDNGDTEKM--SPWDMEL 1122
Query: 923 ------FDSDTQWEQPRIDDDNRNKLLSAF------AKLEQSANRVQDQYGVQKLKQVSQ 970
F + P D + R+ + ++ R+ G+ +L +
Sbjct: 1123 IPNNAVFPEELGTSVPLTDGECRSLIYKPLDGEWGTNPRDEECERIVA--GINQLMTLDI 1180
Query: 971 KTNFT-----NRFPV-------PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFG 1018
+ F +P+ P L I+ RLEN +YR + ++ ++ + N ++
Sbjct: 1181 ASAFVAPVDLQAYPMYCTVVAYPTDLSTIKQRLENRFYRRVSSLMWEVRYIEHNTRTFNE 1240
Query: 1019 RNTDLSTKIKRLSDLV 1034
+ + K ++DL+
Sbjct: 1241 PGSPIVKSAKFVTDLL 1256
>sp|Q54MP8|Y5837_DICDI Bromodomain and WD repeat-containing DDB_G0285837 OS=Dictyostelium
discoideum GN=DDB_G0285837 PE=4 SV=1
Length = 2200
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Query: 791 RAVEFCKVESLEYATASGSGDSCCKMTLKFID----PTSSVSNMTFRLTLPEVTGFPDFL 846
++ + C +++L Y + L D P + F + V+ PD+L
Sbjct: 1304 KSYQECIIKNLNYFISPDGTHKVVITLLPVFDQQVPPQNQNDESNFYTVIYHVSDIPDYL 1363
Query: 847 VERTRFDAAIQRNWTCRDK-CKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTV 905
V ++ ++ +WT +K ++++ W++G ++ + FP+SPWE V
Sbjct: 1364 VLASKVRKSMLTDWTVPNKRFRMFY-----PASGWYNGTIIEISDSDPLFPNSPWENIKV 1418
Query: 906 QYKTEPTETHLHSPWEL---FDSDTQWEQPR-IDDDNRNK 941
+ E ++ WE+ FD D ++ + I D+N N+
Sbjct: 1419 LWDDTEEEDRVNY-WEIDEKFDDDQNPQKIKEIKDENENE 1457
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 977 RF-PVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIK----RLS 1031
RF P P+ + I RLE++YYR L+A+ D +++ +A Y NT ++ K R+S
Sbjct: 1758 RFVPHPMDISTIIKRLESSYYRSLDAIYFDAKLIMIDAYVYNKPNTMVAKNSKLVFHRIS 1817
Query: 1032 DLV 1034
D++
Sbjct: 1818 DIL 1820
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 741 WLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYI 772
WL +++ + Y PQ+GD + Y QGH +Y+
Sbjct: 1203 WLSITSTTSETFYSPQVGDFIFYFYQGHTKYL 1234
>sp|Q07442|BDF2_YEAST Bromodomain-containing factor 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BDF2 PE=1 SV=1
Length = 638
Score = 40.0 bits (92), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 973 NFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1032
++ N P+ L +I+++L+ N Y +E V D M+ N ++ G + +S+ KR+
Sbjct: 171 HYFNYVQTPMDLSLIETKLQGNVYHSVEQVTSDFKTMVDNCLNFNGPESSISSMAKRIQK 230
Query: 1033 LVTRTLSSL 1041
+ LS++
Sbjct: 231 YFEKKLSAM 239
>sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snf21 PE=1 SV=1
Length = 1199
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESY 1016
P++LD I+ + +Y+ LEA+K D+ M +NA +Y
Sbjct: 1111 PIALDAIRKHINGTFYKTLEAMKSDLMTMFNNARTY 1146
>sp|Q96GC6|ZN274_HUMAN Neurotrophin receptor-interacting factor homolog OS=Homo sapiens
GN=ZNF274 PE=1 SV=2
Length = 653
Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 198 KITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKH-----SKGKGISL 252
K+ +S D E L ++QD+ ++ ES + Q+KH S+ +L
Sbjct: 353 KVQESSRDCALSSTLEDTLQGGVQEVQDTVLKQMESAQEKDLPQKKHFDNRESQANSGAL 412
Query: 253 DDSE-DVTKLDTPESHVNAGI----RRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTS 307
D ++ + K+D PES N+G + L+ K+P R + + S K N V + S
Sbjct: 413 DTNQVSLQKIDNPESQANSGALDTNQVLLHKIPPRKRLRKRDSQVKSMKHNSRVKIHQKS 472
Query: 308 SEAHQEATEGNGNRVSY 324
E Q+A EGNG R ++
Sbjct: 473 CE-RQKAKEGNGCRKTF 488
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,311,298
Number of Sequences: 539616
Number of extensions: 18481936
Number of successful extensions: 59332
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 740
Number of HSP's that attempted gapping in prelim test: 52925
Number of HSP's gapped (non-prelim): 5086
length of query: 1051
length of database: 191,569,459
effective HSP length: 128
effective length of query: 923
effective length of database: 122,498,611
effective search space: 113066217953
effective search space used: 113066217953
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 67 (30.4 bits)