Query 001569
Match_columns 1051
No_of_seqs 235 out of 760
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:04:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0644 Uncharacterized conser 100.0 7.7E-93 1.7E-97 815.2 26.2 270 724-1041 843-1113(1113)
2 PF06507 Auxin_resp: Auxin res 99.8 1.2E-19 2.7E-24 165.4 9.0 77 827-904 6-83 (83)
3 cd05529 Bromo_WDR9_I_like Brom 99.8 1.1E-18 2.4E-23 169.6 13.1 123 915-1040 4-127 (128)
4 cd05497 Bromo_Brdt_I_like Brom 99.7 1.3E-17 2.8E-22 157.7 10.2 81 961-1041 25-107 (107)
5 cd05495 Bromo_cbp_like Bromodo 99.7 1.7E-17 3.7E-22 157.1 10.8 103 936-1041 2-106 (108)
6 cd05507 Bromo_brd8_like Bromod 99.7 7.2E-17 1.6E-21 151.7 10.4 100 938-1041 4-103 (104)
7 cd05508 Bromo_RACK7 Bromodomai 99.7 6.1E-17 1.3E-21 151.6 9.7 78 960-1037 21-98 (99)
8 cd05509 Bromo_gcn5_like Bromod 99.7 7.2E-17 1.6E-21 149.8 10.2 81 961-1041 21-101 (101)
9 cd05496 Bromo_WDR9_II Bromodom 99.7 7.4E-17 1.6E-21 155.6 10.1 100 939-1042 7-107 (119)
10 cd05504 Bromo_Acf1_like Bromod 99.7 9.9E-17 2.1E-21 153.5 10.5 84 960-1043 31-114 (115)
11 cd05505 Bromo_WSTF_like Bromod 99.7 9.8E-17 2.1E-21 149.6 9.0 79 960-1038 19-97 (97)
12 cd05510 Bromo_SPT7_like Bromod 99.7 1.7E-16 3.6E-21 151.6 10.7 84 960-1043 27-111 (112)
13 cd05516 Bromo_SNF2L2 Bromodoma 99.7 1.6E-16 3.4E-21 150.2 10.3 80 962-1041 28-107 (107)
14 cd05524 Bromo_polybromo_I Brom 99.7 2.3E-16 5E-21 150.6 9.5 107 937-1044 5-111 (113)
15 cd05502 Bromo_tif1_like Bromod 99.7 4.3E-16 9.2E-21 147.2 11.1 102 935-1041 2-106 (109)
16 cd05500 Bromo_BDF1_2_I Bromodo 99.7 3.6E-16 7.7E-21 146.4 10.5 101 934-1038 1-103 (103)
17 cd05511 Bromo_TFIID Bromodomai 99.7 1.9E-16 4E-21 150.9 8.6 81 962-1042 21-101 (112)
18 cd05517 Bromo_polybromo_II Bro 99.7 2.1E-16 4.6E-21 148.6 8.7 76 962-1037 27-102 (103)
19 smart00297 BROMO bromo domain. 99.7 5.6E-16 1.2E-20 142.9 10.9 82 960-1041 26-107 (107)
20 cd05515 Bromo_polybromo_V Brom 99.6 5.3E-16 1.1E-20 146.1 10.3 78 962-1039 27-104 (105)
21 cd05520 Bromo_polybromo_III Br 99.6 3.8E-16 8.2E-21 147.0 8.9 76 962-1037 27-102 (103)
22 cd05501 Bromo_SP100C_like Brom 99.6 3.2E-16 7E-21 147.9 7.6 73 968-1041 27-99 (102)
23 cd05518 Bromo_polybromo_IV Bro 99.6 5.6E-16 1.2E-20 145.9 9.2 76 962-1037 27-102 (103)
24 cd05503 Bromo_BAZ2A_B_like Bro 99.6 5.8E-16 1.2E-20 143.7 9.1 76 962-1037 21-96 (97)
25 cd05525 Bromo_ASH1 Bromodomain 99.6 9.4E-16 2E-20 145.2 9.6 77 961-1037 28-104 (106)
26 cd05519 Bromo_SNF2 Bromodomain 99.6 1.1E-15 2.3E-20 143.2 9.6 76 962-1037 27-102 (103)
27 cd05528 Bromo_AAA Bromodomain; 99.6 1.6E-15 3.6E-20 144.8 10.5 103 938-1044 4-110 (112)
28 cd05513 Bromo_brd7_like Bromod 99.6 1E-15 2.2E-20 143.2 8.6 75 962-1036 22-96 (98)
29 cd05499 Bromo_BDF1_2_II Bromod 99.6 1.9E-15 4.1E-20 141.0 9.4 77 962-1038 24-102 (102)
30 cd05521 Bromo_Rsc1_2_I Bromodo 99.6 1.7E-15 3.8E-20 143.5 9.3 76 962-1039 28-103 (106)
31 cd05512 Bromo_brd1_like Bromod 99.6 1.7E-15 3.6E-20 141.5 9.0 73 962-1034 22-94 (98)
32 KOG1474 Transcription initiati 99.6 2.5E-15 5.3E-20 178.5 11.0 104 936-1043 221-326 (640)
33 cd05506 Bromo_plant1 Bromodoma 99.6 6.9E-15 1.5E-19 136.1 9.1 68 970-1037 31-98 (99)
34 cd05498 Bromo_Brdt_II_like Bro 99.6 5.4E-15 1.2E-19 137.6 7.4 69 969-1037 33-101 (102)
35 cd05522 Bromo_Rsc1_2_II Bromod 99.6 9.9E-15 2.1E-19 137.4 9.1 96 940-1036 7-102 (104)
36 cd05492 Bromo_ZMYND11 Bromodom 99.5 1.8E-14 3.9E-19 137.5 7.9 72 970-1041 35-106 (109)
37 cd04369 Bromodomain Bromodomai 99.5 7.1E-14 1.5E-18 124.2 9.3 76 962-1037 23-98 (99)
38 PF00439 Bromodomain: Bromodom 99.5 6.2E-14 1.3E-18 124.2 6.8 68 962-1029 17-84 (84)
39 cd05526 Bromo_polybromo_VI Bro 99.4 8.9E-13 1.9E-17 126.3 9.6 79 962-1042 30-108 (110)
40 COG5076 Transcription factor i 99.4 1.6E-12 3.5E-17 145.4 9.3 84 962-1045 169-252 (371)
41 KOG1245 Chromatin remodeling c 99.0 4.4E-10 9.6E-15 142.7 7.0 83 956-1039 1316-1398(1404)
42 cd05491 Bromo_TBP7_like Bromod 98.8 2.4E-09 5.3E-14 104.0 4.2 43 979-1021 62-104 (119)
43 KOG1472 Histone acetyltransfer 98.6 1.5E-08 3.2E-13 121.4 4.1 85 957-1041 622-706 (720)
44 KOG0955 PHD finger protein BR1 98.3 5.8E-07 1.3E-11 111.8 6.1 85 957-1041 580-665 (1051)
45 KOG1827 Chromatin remodeling c 98.1 5.2E-06 1.1E-10 98.9 8.4 108 931-1038 46-155 (629)
46 KOG0008 Transcription initiati 98.1 3E-06 6.6E-11 105.8 5.0 72 967-1038 1408-1479(1563)
47 KOG0386 Chromatin remodeling c 97.9 7.5E-06 1.6E-10 100.6 5.3 104 938-1042 1028-1131(1157)
48 cd05494 Bromodomain_1 Bromodom 97.5 7.9E-05 1.7E-09 72.3 3.0 78 937-1018 3-89 (114)
49 KOG1472 Histone acetyltransfer 97.4 0.00014 3.1E-09 88.1 4.7 73 956-1028 301-373 (720)
50 KOG1474 Transcription initiati 97.4 6.4E-05 1.4E-09 90.8 1.8 76 971-1046 24-99 (640)
51 KOG1828 IRF-2-binding protein 97.1 0.00017 3.7E-09 81.9 1.3 64 968-1032 235-298 (418)
52 KOG0008 Transcription initiati 97.0 0.00081 1.7E-08 85.2 6.1 76 959-1034 1279-1354(1563)
53 KOG1828 IRF-2-binding protein 96.9 7.7E-05 1.7E-09 84.6 -3.3 70 968-1037 46-115 (418)
54 KOG0644 Uncharacterized conser 94.9 0.016 3.6E-07 71.2 2.9 69 968-1037 92-190 (1113)
55 COG5076 Transcription factor i 93.5 0.026 5.6E-07 64.3 0.7 77 965-1041 287-363 (371)
56 cd05493 Bromo_ALL-1 Bromodomai 92.6 0.16 3.4E-06 51.3 4.5 60 981-1040 59-118 (131)
57 smart00333 TUDOR Tudor domain. 88.5 1.1 2.4E-05 37.5 5.4 52 859-925 2-53 (57)
58 smart00743 Agenet Tudor-like d 88.4 1.2 2.6E-05 38.2 5.7 38 859-909 2-39 (61)
59 PF06003 SMN: Survival motor n 79.3 2.1 4.5E-05 47.6 4.1 55 857-924 66-120 (264)
60 PF05641 Agenet: Agenet domain 78.2 5 0.00011 35.8 5.4 41 860-910 1-41 (68)
61 PF09465 LBR_tudor: Lamin-B re 72.0 13 0.00028 33.0 6.1 42 857-910 3-44 (55)
62 KOG0732 AAA+-type ATPase conta 48.9 8.1 0.00018 50.3 1.3 78 971-1048 550-637 (1080)
63 cd04508 TUDOR Tudor domains ar 43.0 40 0.00086 27.2 4.0 34 863-909 1-34 (48)
64 KOG2002 TPR-containing nuclear 37.7 21 0.00047 46.1 2.5 22 215-236 968-989 (1018)
65 KOG3026 Splicing factor SPF30 33.7 31 0.00068 38.5 2.6 42 843-891 77-118 (262)
66 PF11302 DUF3104: Protein of u 25.4 1.6E+02 0.0036 27.8 5.4 44 859-906 5-52 (75)
67 PF05764 YL1: YL1 nuclear prot 22.5 1.4E+02 0.0029 33.1 5.1 29 63-91 25-53 (240)
68 KOG3228 Uncharacterized conser 21.3 48 0.001 36.2 1.3 45 145-194 60-104 (226)
No 1
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=100.00 E-value=7.7e-93 Score=815.23 Aligned_cols=270 Identities=60% Similarity=1.102 Sum_probs=251.0
Q ss_pred CCCccccCccccccCcccccccccCCCCCCCCCCCCeEEEechhhHHHHhhcCCCCCCCccccC-CCcccceeEEEEeeE
Q 001569 724 SSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQGHQEYINYSGSREVGPWITVK-GNIRAVEFCKVESLE 802 (1051)
Q Consensus 724 ~~~~~~~~~~~~~~~~sWL~~t~~~~~spYVPQ~GDEVVYFRQGHeeYleavr~~e~~PW~~lk-~~Lr~~E~CKVvgIk 802 (1051)
..|++..++++.+.+++||++++|+.+|+|||||||||+|||||||+||++++.++. +|+++. ..+.++|.|+|+.|.
T Consensus 843 p~~~~~~~~~~~~~~~sWltls~hee~~ryipQmgDEViyfrQghqeyl~~~~~n~~-~~~~~~p~~~~~v~~~kv~kl~ 921 (1113)
T KOG0644|consen 843 PAPLENMKPQQLFEKPSWLTLSIHEEGCRYIPQMGDEVIYFRQGHQEYLEAVRLNNI-ELNNKEPWNKMAVEICKVEKLV 921 (1113)
T ss_pred CccccccchhhhcCCceeEEeehhhcCCcccccccceeehhhhhhHHHHhhhhhccc-cccccCcccccchhhheeeeee
Confidence 347777778999999999999999999999999999999999999999999987654 444322 347789999999999
Q ss_pred EEecCCCCCceeeeEEEEecCCCCCCCCeEEEEcCCCCCCCceeeehhhHHHHHccCCCCCCeEEEEecCCCCCCCcEEE
Q 001569 803 YATASGSGDSCCKMTLKFIDPTSSVSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWD 882 (1051)
Q Consensus 803 Yei~Pps~~~cckLkL~~LdPaSg~tg~~FsV~Y~p~~d~pDFLVlr~rYd~Am~rnWsvGDRFrm~fe~Ed~idgsWw~ 882 (1051)
|..+|+++++||+|+|+||||++.+..+.|+|+||+|.++|||||++++|++|+++||+.||+|++||.++..++|.||+
T Consensus 922 ~~~y~~~~~s~c~m~l~~idp~s~~~~k~F~ltlpdlv~fpDFlV~rsrYd~AiQrnW~~~d~crvwwrda~~e~g~WWe 1001 (1113)
T KOG0644|consen 922 YITYPGSGDSCCKMKLAVIDPASKLMDKSFKLTLPDLVTFPDFLVERSRYDAAIQRNWTCRDKCRVWWRDAGEEDGAWWE 1001 (1113)
T ss_pred eeeccCCCcchheeeeeeecchhhhhhccceeecccccCcchhhhhhhhHHHHHhhccccccceeEEEccCCCcCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred EEEEEecCCCCCCCCCCCceeEEEEcCCCCccccCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcchhhhhc
Q 001569 883 GRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGV 962 (1051)
Q Consensus 883 GtIvsV~p~dp~wPdSPWe~L~VrWDn~~sE~eRVSPWEIEpi~~p~e~P~id~E~r~kLLsal~klees~~r~qDryGI 962 (1051)
|+|.+++|++|+||+|||+||.|+||++ |.+.|||||+++++ +
T Consensus 1002 G~ils~~pksp~fpdSpwery~v~~~~~--e~~~~spwe~~~i~---------d-------------------------- 1044 (1113)
T KOG0644|consen 1002 GRILSVKPKSPDFPDSPWERYIVRYDNT--ETELHSPWEMEPIP---------D-------------------------- 1044 (1113)
T ss_pred eeeeeccCCCCCCCCCcceeEEEEecCC--cccccCccccCCCc---------c--------------------------
Confidence 9999999999999999999999999998 99999999999753 2
Q ss_pred ccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 001569 963 QKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1041 (1051)
Q Consensus 963 ~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~Lk~L 1041 (1051)
+|++.++.|+.|+.|+.||||+|||++++|.+||..|+.||++|++-+..++.+|..|..||.+.|.++
T Consensus 1045 ----------e~~~~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tlpk~ 1113 (1113)
T KOG0644|consen 1045 ----------EVDNRFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTLPKL 1113 (1113)
T ss_pred ----------ccCCCCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhccCC
Confidence 156789999999999999999999999999999999999999999999999999999999999998654
No 2
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors. The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
Probab=99.80 E-value=1.2e-19 Score=165.39 Aligned_cols=77 Identities=18% Similarity=0.485 Sum_probs=72.9
Q ss_pred CCCCeEEEEcCCCCCCCceeeehhhHHHHHccCCCCCCeEEEEecCCCCCCCcEEEEEEEEecCCCC-CCCCCCCceeE
Q 001569 827 VSNMTFRLTLPEVTGFPDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSS-EFPDSPWERYT 904 (1051)
Q Consensus 827 ~tg~~FsV~Y~p~~d~pDFLVlr~rYd~Am~rnWsvGDRFrm~fe~Ed~idgsWw~GtIvsV~p~dp-~wPdSPWe~L~ 904 (1051)
.++..|.|+|+|+.+.+||||++++|++|+..+|++||||+|.|++||. ...+|.|||++|.+.+| .||+|+|+||+
T Consensus 6 ~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~~~~~~GmRfkM~fE~eds-~~~~~~GtI~~v~~~dp~~w~~S~WR~Lq 83 (83)
T PF06507_consen 6 ATGSPFEVFYYPRASPSEFVVPASKYDKALNHPWSVGMRFKMRFETEDS-SERRWQGTIVGVSDLDPIRWPGSKWRMLQ 83 (83)
T ss_pred hcCCeEEEEECCCCCCcceEEEHHHHHHHhcCCCCCCcEEEEEeccCCC-ccceeeeEEeEeeccCCCCCCCCCcccCc
Confidence 4789999999999999999999999999999999999999999999986 66778999999999999 99999999986
No 3
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.78 E-value=1.1e-18 Score=169.65 Aligned_cols=123 Identities=45% Similarity=0.722 Sum_probs=105.7
Q ss_pred ccCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcchhhhhcccccccc-cCCcccccCCCCCCHHHHHHHHHc
Q 001569 915 HLHSPWELFDSDTQWEQPRIDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS-QKTNFTNRFPVPLSLDVIQSRLEN 993 (1051)
Q Consensus 915 eRVSPWEIEpi~~p~e~P~id~E~r~kLLsal~klees~~r~qDryGI~~L~~l~-e~PDY~~iI~~PMDLsTIr~RLeN 993 (1051)
...++|++..++ |..|.+.++.+++++..+.++...... ....-+..++... .+|+|+.+|++||||+||++||++
T Consensus 4 ~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~l~~~~~~-~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~ 80 (128)
T cd05529 4 PLSSEWELFDPG--WEQPHIRDEERERLISGLDKLLLSLQL-EIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLEN 80 (128)
T ss_pred CCCCchhccccc--CcCCCCCHHHHHHHHHHHHHHHhcccC-cccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhc
Confidence 567999997654 888889999999999999998742111 1112245566666 899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhc
Q 001569 994 NYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1040 (1051)
Q Consensus 994 ~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~Lk~ 1040 (1051)
++|+++++|..||+||+.||.+||+++|.++.+|+.|+++|.+.|..
T Consensus 81 ~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 81 RYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998865
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.73 E-value=1.3e-17 Score=157.73 Aligned_cols=81 Identities=23% Similarity=0.383 Sum_probs=75.0
Q ss_pred hcccccccc--cCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHH
Q 001569 961 GVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1038 (1051)
Q Consensus 961 GI~~L~~l~--e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~L 1038 (1051)
.+..+++.. ++|||+++|++||||+||+.||++++|+++++|..||+|||.||.+||+++|+|+.+|..|+++|++.|
T Consensus 25 ~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~f~~~l 104 (107)
T cd05497 25 PFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGDDVVLMAQTLEKLFLQKL 104 (107)
T ss_pred cccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 355566544 689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC
Q 001569 1039 SSL 1041 (1051)
Q Consensus 1039 k~L 1041 (1051)
+.|
T Consensus 105 ~~~ 107 (107)
T cd05497 105 AQM 107 (107)
T ss_pred HcC
Confidence 865
No 5
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.73 E-value=1.7e-17 Score=157.10 Aligned_cols=103 Identities=15% Similarity=0.286 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhhhcccccccc--cCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhh
Q 001569 936 DDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNA 1013 (1051)
Q Consensus 936 ~E~r~kLLsal~klees~~r~qDryGI~~L~~l~--e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA 1013 (1051)
++.+++|+..+.++...- ...+-+...++.. ++|+|+++|+.||||+||++||+++.|.++.+|..||+|||.||
T Consensus 2 ~~l~~~~~~il~~l~~~~---~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na 78 (108)
T cd05495 2 EELRQALMPTLEKLYKQD---PESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNA 78 (108)
T ss_pred HHHHHHHHHHHHHHHHcC---cccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 678899999888886530 1122244444443 68999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 001569 1014 ESYFGRNTDLSTKIKRLSDLVTRTLSSL 1041 (1051)
Q Consensus 1014 ~tYNep~S~I~k~Ak~L~dvF~~~Lk~L 1041 (1051)
.+||+++|.++++|..|+++|++.|..+
T Consensus 79 ~~yN~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 79 WLYNRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998754
No 6
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.69 E-value=7.2e-17 Score=151.70 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhcccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccC
Q 001569 938 NRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1017 (1051)
Q Consensus 938 ~r~kLLsal~klees~~r~qDryGI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYN 1017 (1051)
.++.++..+..+... ....-+...++...+|+|+.+|+.||||+||++||+++.|.++++|..||+|||.||.+||
T Consensus 4 ~~~~~~~il~~l~~~----~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 4 WKKAILLVYRTLASH----RYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred HHHHHHHHHHHHHcC----CCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 466777777776441 2223355666666799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcC
Q 001569 1018 GRNTDLSTKIKRLSDLVTRTLSSL 1041 (1051)
Q Consensus 1018 ep~S~I~k~Ak~L~dvF~~~Lk~L 1041 (1051)
++++.++.+|+.|++.|.+.|..+
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999998765
No 7
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.69 E-value=6.1e-17 Score=151.64 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=72.7
Q ss_pred hhcccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHH
Q 001569 960 YGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRT 1037 (1051)
Q Consensus 960 yGI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~ 1037 (1051)
+.+...++...+|||+.+|+.||||+||++||+++.|+++++|..||+|||.||.+||+++|.++.+|+.|.++|...
T Consensus 21 ~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 21 EPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred chhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhh
Confidence 345666777789999999999999999999999999999999999999999999999999999999999999998764
No 8
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.69 E-value=7.2e-17 Score=149.84 Aligned_cols=81 Identities=21% Similarity=0.404 Sum_probs=76.2
Q ss_pred hcccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhc
Q 001569 961 GVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1040 (1051)
Q Consensus 961 GI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~Lk~ 1040 (1051)
.+..+++..++|+|+.+|+.||||+||++||+++.|+++++|..||++||+||.+||++++.++++|..|+++|++.|+.
T Consensus 21 ~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 21 PFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred hhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 35566667779999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 001569 1041 L 1041 (1051)
Q Consensus 1041 L 1041 (1051)
|
T Consensus 101 ~ 101 (101)
T cd05509 101 L 101 (101)
T ss_pred C
Confidence 5
No 9
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.69 E-value=7.4e-17 Score=155.64 Aligned_cols=100 Identities=14% Similarity=0.253 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhhhcchhhhhcccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCC
Q 001569 939 RNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFG 1018 (1051)
Q Consensus 939 r~kLLsal~klees~~r~qDryGI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNe 1018 (1051)
+..+...+..+.. ..+...+..+++...+|||+.+|++||||+||++||++++|.++++|..||+|||.||.+||+
T Consensus 7 ~~~c~~il~~l~~----~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~ 82 (119)
T cd05496 7 KKQCKELVNLMWD----CEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTP 82 (119)
T ss_pred HHHHHHHHHHHHh----CCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 4444555555443 123444667777778999999999999999999999999999999999999999999999998
Q ss_pred C-CCHHHHHHHHHHHHHHHHHhcCC
Q 001569 1019 R-NTDLSTKIKRLSDLVTRTLSSLK 1042 (1051)
Q Consensus 1019 p-~S~I~k~Ak~L~dvF~~~Lk~L~ 1042 (1051)
+ ++.|+.+|..|+.+|.+.++.|.
T Consensus 83 ~~~s~i~~~a~~L~~~F~~~~~~l~ 107 (119)
T cd05496 83 NKRSRIYSMTLRLSALFEEHIKKII 107 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5 99999999999999999988764
No 10
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.69 E-value=9.9e-17 Score=153.53 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=78.0
Q ss_pred hhcccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHh
Q 001569 960 YGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLS 1039 (1051)
Q Consensus 960 yGI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~Lk 1039 (1051)
..+..+++..++|+|+++|+.||||+||++||+++.|.++++|..||+|||.||.+||+++|+|+++|..|+.+|.+.++
T Consensus 31 ~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~s~i~~~A~~l~~~f~~~~~ 110 (115)
T cd05504 31 WPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEHTSVYKAGTRLQRFFIKRCR 110 (115)
T ss_pred hhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 33556666678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 001569 1040 SLKA 1043 (1051)
Q Consensus 1040 ~L~~ 1043 (1051)
+|.-
T Consensus 111 ~~~~ 114 (115)
T cd05504 111 KLGL 114 (115)
T ss_pred HhCC
Confidence 8763
No 11
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.68 E-value=9.8e-17 Score=149.57 Aligned_cols=79 Identities=14% Similarity=0.348 Sum_probs=73.3
Q ss_pred hhcccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHH
Q 001569 960 YGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1038 (1051)
Q Consensus 960 yGI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~L 1038 (1051)
..+..+++..++|+|+.+|+.||||+||++||+++.|.++++|..||+|||.||.+||+++|.|+.+|..|+++|...|
T Consensus 19 ~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~le~~f~~~~ 97 (97)
T cd05505 19 WPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYVLSCMRKTEQCCVNLL 97 (97)
T ss_pred ccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 3355666677899999999999999999999999999999999999999999999999999999999999999998763
No 12
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.68 E-value=1.7e-16 Score=151.64 Aligned_cols=84 Identities=12% Similarity=0.184 Sum_probs=76.9
Q ss_pred hhcccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCC-HHHHHHHHHHHHHHHHH
Q 001569 960 YGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNT-DLSTKIKRLSDLVTRTL 1038 (1051)
Q Consensus 960 yGI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S-~I~k~Ak~L~dvF~~~L 1038 (1051)
..+..+++..++|+|+.+|+.||||+||++||+++.|.++++|..|++|||+||.+||++++ +++++|+.|++.|...|
T Consensus 27 ~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~~~s~~~~~~A~~l~~~~~~~~ 106 (112)
T cd05510 27 TPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSDPSHPLRRHANFMKKKAEHLL 106 (112)
T ss_pred cchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 33566677778999999999999999999999999999999999999999999999999865 78899999999999999
Q ss_pred hcCCC
Q 001569 1039 SSLKA 1043 (1051)
Q Consensus 1039 k~L~~ 1043 (1051)
..|+.
T Consensus 107 ~~~~~ 111 (112)
T cd05510 107 KLIPD 111 (112)
T ss_pred HHCCC
Confidence 98853
No 13
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.68 E-value=1.6e-16 Score=150.24 Aligned_cols=80 Identities=16% Similarity=0.303 Sum_probs=75.5
Q ss_pred cccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 001569 962 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1041 (1051)
Q Consensus 962 I~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~Lk~L 1041 (1051)
+..++....+||||.+|+.||||+||++||+++.|.++++|..||+|||.||.+||+++|.|+.+|..|+++|...++++
T Consensus 28 F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 28 FIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred hhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45566777899999999999999999999999999999999999999999999999999999999999999999998764
No 14
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.66 E-value=2.3e-16 Score=150.61 Aligned_cols=107 Identities=13% Similarity=0.258 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhhhcccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhccc
Q 001569 937 DNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESY 1016 (1051)
Q Consensus 937 E~r~kLLsal~klees~~r~qDryGI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tY 1016 (1051)
+.+..|+..+........+. -...+..+.....+|+||++|++||||+||++||+++.|.++.+|..||+|||.||.+|
T Consensus 5 ~~c~~il~~l~~~~~~~g~~-l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 83 (113)
T cd05524 5 AVCQELYDTIRNYKSEDGRI-LCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHHHHHHhhcccCCCc-hhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34555666655543221110 00114456667789999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 001569 1017 FGRNTDLSTKIKRLSDLVTRTLSSLKAP 1044 (1051)
Q Consensus 1017 Nep~S~I~k~Ak~L~dvF~~~Lk~L~~~ 1044 (1051)
|+++|.++++|..|+++|...+.++...
T Consensus 84 N~~~s~~~~~A~~L~~~f~~~~~~~~~~ 111 (113)
T cd05524 84 YKPDSPEHKDACKLWELFLSARNEVLSG 111 (113)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999887654
No 15
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.66 E-value=4.3e-16 Score=147.18 Aligned_cols=102 Identities=15% Similarity=0.224 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHHHHHhhhcchhhhhcccccccccCCcccccCCCCCCHHHHHHHHHc---CCCCCHHHHHHHHHHHHH
Q 001569 935 DDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLEN---NYYRGLEAVKHDIAVMLS 1011 (1051)
Q Consensus 935 d~E~r~kLLsal~klees~~r~qDryGI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN---~~YRsieaf~~DVrLI~s 1011 (1051)
+++++.++...+.++... .....+..++.. .+|+|+.+|++||||+||++||++ +.|.++++|..||+||++
T Consensus 2 ~~~~~~~c~~il~~l~~~----~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~ 76 (109)
T cd05502 2 SPIDQRKCERLLLELYCH----ELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFK 76 (109)
T ss_pred CHHHHHHHHHHHHHHHhC----CCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 456677777777776542 112334555555 799999999999999999999999 599999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 001569 1012 NAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1041 (1051)
Q Consensus 1012 NA~tYNep~S~I~k~Ak~L~dvF~~~Lk~L 1041 (1051)
||..||+++|.++.+|+.|.++|++.+..+
T Consensus 77 Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 77 NCYKFNEEDSEVAQAGKELELFFEEQLKEI 106 (109)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998875
No 16
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.66 E-value=3.6e-16 Score=146.37 Aligned_cols=101 Identities=21% Similarity=0.322 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhhcchhhhhccccccc--ccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 001569 934 IDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQV--SQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLS 1011 (1051)
Q Consensus 934 id~E~r~kLLsal~klees~~r~qDryGI~~L~~l--~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~s 1011 (1051)
+++++++.+++.+..+.+. .+..-+...++. ..+|+|+.+|++||||+||++||+++.|.++++|..||++||+
T Consensus 1 ~t~~~~~~~~~ii~~l~~~----~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 76 (103)
T cd05500 1 MTKHQHKFLLSSIRSLKRL----KDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVD 76 (103)
T ss_pred CCHHHHHHHHHHHHHHHcC----CCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3567888888888887642 222334444443 3689999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHH
Q 001569 1012 NAESYFGRNTDLSTKIKRLSDLVTRTL 1038 (1051)
Q Consensus 1012 NA~tYNep~S~I~k~Ak~L~dvF~~~L 1038 (1051)
||..||+++|.++.+|+.|+..|++.|
T Consensus 77 Na~~yN~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 77 NCLTFNGPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999863
No 17
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.66 E-value=1.9e-16 Score=150.91 Aligned_cols=81 Identities=17% Similarity=0.334 Sum_probs=76.7
Q ss_pred cccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 001569 962 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1041 (1051)
Q Consensus 962 I~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~Lk~L 1041 (1051)
+..+++...+|+|+.+|+.||||+||++||+++.|+++++|+.||+|||+||..||++++.++++|+.|..+|.+.++.+
T Consensus 21 F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~~~ 100 (112)
T cd05511 21 FHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVYTKKAKEMLELAEELLAER 100 (112)
T ss_pred hcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 56666667899999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred C
Q 001569 1042 K 1042 (1051)
Q Consensus 1042 ~ 1042 (1051)
+
T Consensus 101 ~ 101 (112)
T cd05511 101 E 101 (112)
T ss_pred H
Confidence 4
No 18
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.66 E-value=2.1e-16 Score=148.63 Aligned_cols=76 Identities=20% Similarity=0.433 Sum_probs=72.2
Q ss_pred cccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHH
Q 001569 962 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRT 1037 (1051)
Q Consensus 962 I~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~ 1037 (1051)
+..+....++|+||.+|++||||+||++||+++.|.++++|..||+|||.||.+||+++|.|+.+|..|+++|..+
T Consensus 27 F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05517 27 FQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEPGSQVYKDANAIKKIFTAK 102 (103)
T ss_pred HhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 5567778889999999999999999999999999999999999999999999999999999999999999999863
No 19
>smart00297 BROMO bromo domain.
Probab=99.65 E-value=5.6e-16 Score=142.90 Aligned_cols=82 Identities=24% Similarity=0.471 Sum_probs=76.2
Q ss_pred hhcccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHh
Q 001569 960 YGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLS 1039 (1051)
Q Consensus 960 yGI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~Lk 1039 (1051)
..+..++....+|+|+.+|+.||||.+|++||+++.|+++++|..|+++|+.||..||++++.++.+|+.|.+.|.+.++
T Consensus 26 ~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~~s~~~~~a~~l~~~f~~~~~ 105 (107)
T smart00297 26 WPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGPDSEVYKDAKKLEKFFEKKLR 105 (107)
T ss_pred hhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHh
Confidence 44666677777999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 001569 1040 SL 1041 (1051)
Q Consensus 1040 ~L 1041 (1051)
.+
T Consensus 106 ~~ 107 (107)
T smart00297 106 EL 107 (107)
T ss_pred hC
Confidence 53
No 20
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.65 E-value=5.3e-16 Score=146.08 Aligned_cols=78 Identities=21% Similarity=0.390 Sum_probs=73.8
Q ss_pred cccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHh
Q 001569 962 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLS 1039 (1051)
Q Consensus 962 I~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~Lk 1039 (1051)
+..+....++|+|+.+|++||||+||++||+++.|.++++|..||+|||.||.+||+++|.|+.+|..|+++|.++..
T Consensus 27 F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 27 FMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred hccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 566777788999999999999999999999999999999999999999999999999999999999999999998753
No 21
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.65 E-value=3.8e-16 Score=146.97 Aligned_cols=76 Identities=25% Similarity=0.437 Sum_probs=72.1
Q ss_pred cccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHH
Q 001569 962 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRT 1037 (1051)
Q Consensus 962 I~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~ 1037 (1051)
+..+.....+|+||.+|++||||+||++||+++.|+++++|..|++|||.||.+||+++|.++.+|..|+.+|..+
T Consensus 27 F~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 27 FLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred hhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 5666777889999999999999999999999999999999999999999999999999999999999999999864
No 22
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.64 E-value=3.2e-16 Score=147.93 Aligned_cols=73 Identities=14% Similarity=0.321 Sum_probs=69.8
Q ss_pred cccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 001569 968 VSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1041 (1051)
Q Consensus 968 l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~Lk~L 1041 (1051)
...+|||+++|++||||+||++||.++.|.++++|+.||+|||.||.+||+++ .++++|..|+++|++.++.+
T Consensus 27 p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 27 PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999 99999999999999988754
No 23
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.64 E-value=5.6e-16 Score=145.92 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=71.4
Q ss_pred cccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHH
Q 001569 962 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRT 1037 (1051)
Q Consensus 962 I~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~ 1037 (1051)
+..+....++|||+.+|+.||||+||+.||.++.|.++++|..|++|||.||.+||+++|+|+.+|..|+++|..+
T Consensus 27 F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 27 FMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 4566677789999999999999999999999999999999999999999999999999999999999999999763
No 24
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.64 E-value=5.8e-16 Score=143.71 Aligned_cols=76 Identities=13% Similarity=0.340 Sum_probs=71.4
Q ss_pred cccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHH
Q 001569 962 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRT 1037 (1051)
Q Consensus 962 I~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~ 1037 (1051)
+..++....+|+|+.+|+.||||+||++||+++.|+++++|..|++||+.||..||++++.++++|..|+++|+..
T Consensus 21 F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~ 96 (97)
T cd05503 21 FLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEVGRAGHNMRKFFEKR 96 (97)
T ss_pred hcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 4555666679999999999999999999999999999999999999999999999999999999999999999875
No 25
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.63 E-value=9.4e-16 Score=145.15 Aligned_cols=77 Identities=23% Similarity=0.473 Sum_probs=72.9
Q ss_pred hcccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHH
Q 001569 961 GVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRT 1037 (1051)
Q Consensus 961 GI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~ 1037 (1051)
.+..+.....+|+||.+|+.||||+||++||+++.|.++++|..|+.|||.||.+||+++|.|+++|..|+++|.+.
T Consensus 28 ~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 28 PFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred hhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHc
Confidence 35667777889999999999999999999999999999999999999999999999999999999999999999874
No 26
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.63 E-value=1.1e-15 Score=143.16 Aligned_cols=76 Identities=18% Similarity=0.307 Sum_probs=71.9
Q ss_pred cccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHH
Q 001569 962 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRT 1037 (1051)
Q Consensus 962 I~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~ 1037 (1051)
+..+.....+|+|+.+|++||||+||++||+++.|.++.+|..|+++||.||.+||+++|.++.+|+.|++.|...
T Consensus 27 F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 27 FLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred hcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 4566777789999999999999999999999999999999999999999999999999999999999999999875
No 27
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.62 E-value=1.6e-15 Score=144.78 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhcccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccC
Q 001569 938 NRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1017 (1051)
Q Consensus 938 ~r~kLLsal~klees~~r~qDryGI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYN 1017 (1051)
.|-.|...+.++... ...+.+...++..++|+|+++|++||||+||++||+++.|.++++|..||+|||.||..||
T Consensus 4 lr~~L~~il~~l~~~----~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN 79 (112)
T cd05528 4 LRLFLRDVLKRLASD----KRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYN 79 (112)
T ss_pred HHHHHHHHHHHHHhC----CCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHC
Confidence 344455555555441 2223456677778899999999999999999999999999999999999999999999999
Q ss_pred CCC----CHHHHHHHHHHHHHHHHHhcCCCC
Q 001569 1018 GRN----TDLSTKIKRLSDLVTRTLSSLKAP 1044 (1051)
Q Consensus 1018 ep~----S~I~k~Ak~L~dvF~~~Lk~L~~~ 1044 (1051)
+++ +.|+.+|..|++.|.+.++.+-++
T Consensus 80 ~~~s~~~s~i~~~A~~L~~~~~~~~~~~~~~ 110 (112)
T cd05528 80 PDRDPADKLIRSRACELRDEVHAMIEAELDP 110 (112)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 995 699999999999999999887554
No 28
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.62 E-value=1e-15 Score=143.25 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=68.1
Q ss_pred cccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHH
Q 001569 962 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTR 1036 (1051)
Q Consensus 962 I~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~ 1036 (1051)
+...++...+|+|+++|+.||||+||++||+++.|.++++|..||+|||.||.+||++++.++++|..|.+.-.+
T Consensus 22 F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~ 96 (98)
T cd05513 22 FAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTIYYKAAKKLLHSGMK 96 (98)
T ss_pred ccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhh
Confidence 344555567899999999999999999999999999999999999999999999999999999999999776443
No 29
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.61 E-value=1.9e-15 Score=140.99 Aligned_cols=77 Identities=16% Similarity=0.289 Sum_probs=71.4
Q ss_pred cccccccc--cCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHH
Q 001569 962 VQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1038 (1051)
Q Consensus 962 I~~L~~l~--e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~L 1038 (1051)
+..+++.. .+|+|+++|++||||+||++||+++.|+++++|..|++|||.||..||+++|.++.+|..|+++|++.+
T Consensus 24 F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 24 FLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred hcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 44555555 899999999999999999999999999999999999999999999999999999999999999998763
No 30
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.61 E-value=1.7e-15 Score=143.46 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=71.1
Q ss_pred cccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHh
Q 001569 962 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLS 1039 (1051)
Q Consensus 962 I~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~Lk 1039 (1051)
+..+....++|+||.+|+.||||+||++||++ |.++++|..|+++||.||.+||+++|.|+++|..|+++|...+.
T Consensus 28 F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 28 FNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred hhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 45566677899999999999999999999999 99999999999999999999999999999999999999998763
No 31
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.61 E-value=1.7e-15 Score=141.49 Aligned_cols=73 Identities=21% Similarity=0.399 Sum_probs=68.1
Q ss_pred cccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHH
Q 001569 962 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1034 (1051)
Q Consensus 962 I~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF 1034 (1051)
+...++..++|+|+.+|+.||||+||++||+++.|.++++|..||+|||.||.+||++++.++++|..|++.-
T Consensus 22 F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~~A~~l~~~~ 94 (98)
T cd05512 22 FSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTIFYRAAVRLRDQG 94 (98)
T ss_pred hcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhh
Confidence 5556666789999999999999999999999999999999999999999999999999999999999998753
No 32
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.60 E-value=2.5e-15 Score=178.51 Aligned_cols=104 Identities=17% Similarity=0.319 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhhhcccccccc--cCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhh
Q 001569 936 DDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNA 1013 (1051)
Q Consensus 936 ~E~r~kLLsal~klees~~r~qDryGI~~L~~l~--e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA 1013 (1051)
..+....++.|.+|... +-.|-|...+++. .+|||++||++||||+|||.||++++|.++.+|..||||||.||
T Consensus 221 ~~~lk~C~~iLk~l~~~----k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Nc 296 (640)
T KOG1474|consen 221 VELLKQCLSILKRLMKH----KHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNC 296 (640)
T ss_pred HHHHHHHHHHHHHHHhc----cCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHH
Confidence 34455555666666542 2236666666653 58999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 001569 1014 ESYFGRNTDLSTKIKRLSDLVTRTLSSLKA 1043 (1051)
Q Consensus 1014 ~tYNep~S~I~k~Ak~L~dvF~~~Lk~L~~ 1043 (1051)
.+||.++++++.+|+.|+++|+.+++.+..
T Consensus 297 m~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~ 326 (640)
T KOG1474|consen 297 MTYNPEGSDVYAMAKKLQEVFEERWASMPL 326 (640)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999998643
No 33
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.57 E-value=6.9e-15 Score=136.06 Aligned_cols=68 Identities=21% Similarity=0.349 Sum_probs=66.3
Q ss_pred cCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHH
Q 001569 970 QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRT 1037 (1051)
Q Consensus 970 e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~ 1037 (1051)
++|+|+.+|+.||||+||++||+++.|.++++|..|+++|+.||.+||+++|.++++|..|...|+.+
T Consensus 31 ~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe~~ 98 (99)
T cd05506 31 GLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGNDVHTMAKELLKIFETR 98 (99)
T ss_pred CCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999875
No 34
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.56 E-value=5.4e-15 Score=137.59 Aligned_cols=69 Identities=19% Similarity=0.370 Sum_probs=66.8
Q ss_pred ccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHH
Q 001569 969 SQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRT 1037 (1051)
Q Consensus 969 ~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~ 1037 (1051)
.++|+|+.+|++||||+||++||+++.|+++++|..|++||+.||..||+++|.++.+|+.|++.|++.
T Consensus 33 ~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe~~ 101 (102)
T cd05498 33 LGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYNPPDHPVHAMARKLQDVFEDR 101 (102)
T ss_pred cCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 368999999999999999999999999999999999999999999999999999999999999999875
No 35
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.56 E-value=9.9e-15 Score=137.44 Aligned_cols=96 Identities=18% Similarity=0.323 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhhhcchhhhhcccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCC
Q 001569 940 NKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGR 1019 (1051)
Q Consensus 940 ~kLLsal~klees~~r~qDryGI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep 1019 (1051)
..++.++..+....++. -..-+..+.....+|+||++|++||||+||++||.++.|.++.+|..|+++||.||.+||++
T Consensus 7 ~~i~~~v~~~~d~~g~~-l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~ 85 (104)
T cd05522 7 KNILKGLRKERDENGRL-LTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNEN 85 (104)
T ss_pred HHHHHHHHHHhCcCCCc-ccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34555555543321111 01225567777789999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 001569 1020 NTDLSTKIKRLSDLVTR 1036 (1051)
Q Consensus 1020 ~S~I~k~Ak~L~dvF~~ 1036 (1051)
++.++.+|..|+..|..
T Consensus 86 ~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 86 DSQEYKDAVLLEKEARL 102 (104)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999999986
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.52 E-value=1.8e-14 Score=137.53 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=68.3
Q ss_pred cCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 001569 970 QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1041 (1051)
Q Consensus 970 e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~Lk~L 1041 (1051)
.+|+|+.+|+.||||+||++||+++.|+++++|+.||+||++||.+||+++|.++.+|+.|-......|..|
T Consensus 35 ~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 35 KLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred cCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999998887776655
No 37
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.50 E-value=7.1e-14 Score=124.18 Aligned_cols=76 Identities=22% Similarity=0.444 Sum_probs=70.9
Q ss_pred cccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHH
Q 001569 962 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRT 1037 (1051)
Q Consensus 962 I~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~ 1037 (1051)
+..++....+|+|+.+|++||||.+|+.||.+++|.++++|..|+++|+.||..||++++.++.+|..|...|...
T Consensus 23 F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 23 FLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKL 98 (99)
T ss_pred HhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 4455555679999999999999999999999999999999999999999999999999999999999999999875
No 38
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.47 E-value=6.2e-14 Score=124.23 Aligned_cols=68 Identities=19% Similarity=0.397 Sum_probs=61.6
Q ss_pred cccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHH
Q 001569 962 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKR 1029 (1051)
Q Consensus 962 I~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~ 1029 (1051)
+..+.....+|+|+.+|+.||||++|++||+++.|+++++|..||++|+.||..||++++.++.+|++
T Consensus 17 F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~~A~~ 84 (84)
T PF00439_consen 17 FSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYKAAEK 84 (84)
T ss_dssp GSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred hcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHHHhcC
Confidence 45555677899999999999999999999999999999999999999999999999999999999974
No 39
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.40 E-value=8.9e-13 Score=126.32 Aligned_cols=79 Identities=18% Similarity=0.328 Sum_probs=71.2
Q ss_pred cccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 001569 962 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1041 (1051)
Q Consensus 962 I~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~Lk~L 1041 (1051)
+..|.. ..|+|+.+|+.||||.+|++||+++.|+++++|..|+.+||.||++||+++|.|+..|..|+.+|.++-..|
T Consensus 30 f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~yN~~~S~iy~dA~eLq~~f~~~rd~~ 107 (110)
T cd05526 30 LAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRLSRTDSEIYEDAVELQQFFIKIRDEL 107 (110)
T ss_pred HHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 344444 457888999999999999999999999999999999999999999999999999999999999999887665
Q ss_pred C
Q 001569 1042 K 1042 (1051)
Q Consensus 1042 ~ 1042 (1051)
.
T Consensus 108 ~ 108 (110)
T cd05526 108 C 108 (110)
T ss_pred h
Confidence 3
No 40
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.35 E-value=1.6e-12 Score=145.43 Aligned_cols=84 Identities=19% Similarity=0.361 Sum_probs=78.0
Q ss_pred cccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 001569 962 VQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1041 (1051)
Q Consensus 962 I~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~Lk~L 1041 (1051)
+..+.....+|+||.+|+.||||.+|+++|+++.|+++++|+.|+.|||.||.+||+|++.++.+|+.|++.|.+.|..+
T Consensus 169 F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~ 248 (371)
T COG5076 169 FLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEEI 248 (371)
T ss_pred cccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHHHHHHhc
Confidence 45566677899999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCCC
Q 001569 1042 KAPQ 1045 (1051)
Q Consensus 1042 ~~~q 1045 (1051)
....
T Consensus 249 ~~~~ 252 (371)
T COG5076 249 PEEM 252 (371)
T ss_pred cccc
Confidence 6544
No 41
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=98.99 E-value=4.4e-10 Score=142.73 Aligned_cols=83 Identities=14% Similarity=0.288 Sum_probs=77.2
Q ss_pred chhhhhcccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHH
Q 001569 956 VQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVT 1035 (1051)
Q Consensus 956 ~qDryGI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~ 1035 (1051)
+.+.+.+..+++...+|+|+.||++||||+||+.||.-+.|.++++|..||+|||.||.+||++ |.|+++.-.|..+|.
T Consensus 1316 ~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ag~~l~~ff~ 1394 (1404)
T KOG1245|consen 1316 HKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGRAGTCLRRFFH 1394 (1404)
T ss_pred hhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhhhcchHHHHHH
Confidence 3455778888889999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHh
Q 001569 1036 RTLS 1039 (1051)
Q Consensus 1036 ~~Lk 1039 (1051)
.+..
T Consensus 1395 ~~~~ 1398 (1404)
T KOG1245|consen 1395 KRWR 1398 (1404)
T ss_pred HHHH
Confidence 7544
No 42
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.83 E-value=2.4e-09 Score=104.03 Aligned_cols=43 Identities=28% Similarity=0.382 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCC
Q 001569 979 PVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNT 1021 (1051)
Q Consensus 979 ~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S 1021 (1051)
-+||||+||++||.|++|.++++|++||++||.||.+||.++.
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred EeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3799999999999999999999999999999999999998743
No 43
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.65 E-value=1.5e-08 Score=121.41 Aligned_cols=85 Identities=21% Similarity=0.348 Sum_probs=78.2
Q ss_pred hhhhhcccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHH
Q 001569 957 QDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTR 1036 (1051)
Q Consensus 957 qDryGI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~ 1036 (1051)
.+-+-+.+.+...++||||.+|.+||||.||+.||.+++|..++.|+.|+.+||.||+.||++++..++.|-.|..+|..
T Consensus 622 ~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~~~~le~~~~~ 701 (720)
T KOG1472|consen 622 GDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDTQYYKCAQALEKFFLF 701 (720)
T ss_pred CccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccchheecccchhhhhcc
Confidence 34455667777889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhcC
Q 001569 1037 TLSSL 1041 (1051)
Q Consensus 1037 ~Lk~L 1041 (1051)
.+..+
T Consensus 702 k~~~~ 706 (720)
T KOG1472|consen 702 KLNEL 706 (720)
T ss_pred hhhhh
Confidence 87654
No 44
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.31 E-value=5.8e-07 Score=111.80 Aligned_cols=85 Identities=21% Similarity=0.423 Sum_probs=77.2
Q ss_pred hhhhhccc-ccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHH
Q 001569 957 QDQYGVQK-LKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVT 1035 (1051)
Q Consensus 957 qDryGI~~-L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~ 1035 (1051)
.|.+||.. .+...++|||..+|+.||||.||+.+|++..|+++++|..|+.+|..||..||..++.+++.|.++++...
T Consensus 580 kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~ 659 (1051)
T KOG0955|consen 580 KDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIK 659 (1051)
T ss_pred ccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhh
Confidence 46677654 46678899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhcC
Q 001569 1036 RTLSSL 1041 (1051)
Q Consensus 1036 ~~Lk~L 1041 (1051)
..+...
T Consensus 660 ~~~~~a 665 (1051)
T KOG0955|consen 660 KDFRNA 665 (1051)
T ss_pred hHHHhc
Confidence 876654
No 45
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.13 E-value=5.2e-06 Score=98.90 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=84.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhc-chhhh-hcccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001569 931 QPRIDDDNRNKLLSAFAKLEQSANR-VQDQY-GVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAV 1008 (1051)
Q Consensus 931 ~P~id~E~r~kLLsal~klees~~r-~qDry-GI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrL 1008 (1051)
.|.|+...+.++...|+.+..-... ..+.+ .+.+|......|.||.+|..||.|..|+.|+..+.|++.+.|..|+.+
T Consensus 46 ~p~i~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~l 125 (629)
T KOG1827|consen 46 SPVIDPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLL 125 (629)
T ss_pred ccccChHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4556666666655555443321100 01111 246677778889999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCHHHHHHHHHHHHHHHHH
Q 001569 1009 MLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1038 (1051)
Q Consensus 1009 I~sNA~tYNep~S~I~k~Ak~L~dvF~~~L 1038 (1051)
|++||.+||.+++.++++|..|...|....
T Consensus 126 m~ena~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 126 MTENARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HHHHHHHhcCcchhhhhhhhhhhcchhhhh
Confidence 999999999999999999999999998854
No 46
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.06 E-value=3e-06 Score=105.83 Aligned_cols=72 Identities=14% Similarity=0.346 Sum_probs=65.7
Q ss_pred ccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHH
Q 001569 967 QVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTL 1038 (1051)
Q Consensus 967 ~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~L 1038 (1051)
.....|+||.+|+.||||+||.+.+..+.|.+.++|..||++|+.||..||++++.+...|+.+-++.+..|
T Consensus 1408 ~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~~k~~ev~~~~~ 1479 (1563)
T KOG0008|consen 1408 NKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKARKIGEVGLANL 1479 (1563)
T ss_pred chhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccHHHHHHHHHHHHHH
Confidence 334579999999999999999999999999999999999999999999999999999999999877766543
No 47
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.95 E-value=7.5e-06 Score=100.58 Aligned_cols=104 Identities=20% Similarity=0.301 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhcccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccC
Q 001569 938 NRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1017 (1051)
Q Consensus 938 ~r~kLLsal~klees~~r~qDryGI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYN 1017 (1051)
...+++....+......+. ..-++..+....++||||.+|+.|+++..|++++++..|.+..++..|+.+++.||++||
T Consensus 1028 ~~~~i~~~~~~~~~~~~r~-~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~ 1106 (1157)
T KOG0386|consen 1028 QALKIASTSIKYKDSAGRE-LSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYN 1106 (1157)
T ss_pred HHHHHHHHHHhcccccccc-cchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhc
Confidence 3445555544433321211 012355677778899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCC
Q 001569 1018 GRNTDLSTKIKRLSDLVTRTLSSLK 1042 (1051)
Q Consensus 1018 ep~S~I~k~Ak~L~dvF~~~Lk~L~ 1042 (1051)
+.+|.++..|..|..+|......+.
T Consensus 1107 ~egs~~y~d~~~l~~~~~~~~~~~~ 1131 (1157)
T KOG0386|consen 1107 EEGSRVYEDAIVLQSVFKSARQEIS 1131 (1157)
T ss_pred cCCceechhHHHHHHHHhhhHHHHh
Confidence 9999999999999999998877664
No 48
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.45 E-value=7.9e-05 Score=72.25 Aligned_cols=78 Identities=6% Similarity=0.043 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhhhccccccc--ccCCcccccCCCCCCHHHHHHHHHcC-------CCCCHHHHHHHHH
Q 001569 937 DNRNKLLSAFAKLEQSANRVQDQYGVQKLKQV--SQKTNFTNRFPVPLSLDVIQSRLENN-------YYRGLEAVKHDIA 1007 (1051)
Q Consensus 937 E~r~kLLsal~klees~~r~qDryGI~~L~~l--~e~PDY~~iI~~PMDLsTIr~RLeN~-------~YRsieaf~~DVr 1007 (1051)
+..+.++..+..+... ...+-+...+.. ..+|||+.+|+.||||+||+.+|.+. +|.--+....++.
T Consensus 3 e~~~~~l~~l~~~~~~----~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~ 78 (114)
T cd05494 3 EALERVLRELKRHRRN----EDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQI 78 (114)
T ss_pred HHHHHHHHHHHHhhhC----CCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccc
Confidence 4455566666554421 123335556666 67999999999999999999999997 4554555556666
Q ss_pred HHHHhhcccCC
Q 001569 1008 VMLSNAESYFG 1018 (1051)
Q Consensus 1008 LI~sNA~tYNe 1018 (1051)
++..||..+|.
T Consensus 79 ~~~~~~~~~~~ 89 (114)
T cd05494 79 DDEGRRSPSNI 89 (114)
T ss_pred ccccccCcccc
Confidence 66666666665
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=97.38 E-value=0.00014 Score=88.09 Aligned_cols=73 Identities=14% Similarity=0.209 Sum_probs=60.7
Q ss_pred chhhhhcccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHH
Q 001569 956 VQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIK 1028 (1051)
Q Consensus 956 ~qDryGI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak 1028 (1051)
+.+...+..-+....+|+||.+|+.||||.|+..+|.+.-|-+.+.|+.|+.+||.||++||...+..+..-.
T Consensus 301 ~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~ 373 (720)
T KOG1472|consen 301 TEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFA 373 (720)
T ss_pred cccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhhhhh
Confidence 3444444444556779999999999999999999999999999999999999999999999997666544433
No 50
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=97.38 E-value=6.4e-05 Score=90.85 Aligned_cols=76 Identities=21% Similarity=0.331 Sum_probs=71.0
Q ss_pred CCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001569 971 KTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSLKAPQF 1046 (1051)
Q Consensus 971 ~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~Lk~L~~~q~ 1046 (1051)
.|+|+.+|..|||+.||..||++++|......+.|+..+|.||..||.+.-.|+.++..+.++|.+.+..+.....
T Consensus 24 ~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 99 (640)
T KOG1474|consen 24 LPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSMPSDEE 99 (640)
T ss_pred chhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchhhccccccccccccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999888777655443
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.10 E-value=0.00017 Score=81.87 Aligned_cols=64 Identities=8% Similarity=0.008 Sum_probs=59.9
Q ss_pred cccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 001569 968 VSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSD 1032 (1051)
Q Consensus 968 l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~d 1032 (1051)
...+|.|..+|++|++.+|++.+..+++|.+ -+|..|+.+|+.||.+||+++..++..|+.+..
T Consensus 235 as~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyelank~lh 298 (418)
T KOG1828|consen 235 ASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELANKQLH 298 (418)
T ss_pred hhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHHHhhhh
Confidence 3567999999999999999999999999999 899999999999999999999999999988765
No 52
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=97.02 E-value=0.00081 Score=85.19 Aligned_cols=76 Identities=14% Similarity=0.305 Sum_probs=68.3
Q ss_pred hhhcccccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHH
Q 001569 959 QYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLV 1034 (1051)
Q Consensus 959 ryGI~~L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF 1034 (1051)
.+.|...++.+++++||.||..||||.|+|+.+..+-|-.-+.|..|+.+|+.|..+||++.+.+...|..+-...
T Consensus 1279 t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~q~mls~~ 1354 (1563)
T KOG0008|consen 1279 TYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQQQSMLSLC 1354 (1563)
T ss_pred CcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHHHHHHHHHH
Confidence 3456666777889999999999999999999999999999999999999999999999999999999998765443
No 53
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=96.94 E-value=7.7e-05 Score=84.59 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=64.8
Q ss_pred cccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHH
Q 001569 968 VSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRT 1037 (1051)
Q Consensus 968 l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~ 1037 (1051)
-.-+|+|.++|+.|||+.||+.+++-++|-++.+|..|.++|..||..||..++.+...|++|..+-...
T Consensus 46 ~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v~~~~ 115 (418)
T KOG1828|consen 46 DKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPVRLGM 115 (418)
T ss_pred hhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccccccccccchhhcch
Confidence 3447999999999999999999999999999999999999999999999999999999999998776443
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=94.89 E-value=0.016 Score=71.19 Aligned_cols=69 Identities=16% Similarity=0.140 Sum_probs=61.1
Q ss_pred cccCCcccccCCCCCCHHHHHHHHHcCCC--------------C----------CHHH------HHHHHHHHHHhhcccC
Q 001569 968 VSQKTNFTNRFPVPLSLDVIQSRLENNYY--------------R----------GLEA------VKHDIAVMLSNAESYF 1017 (1051)
Q Consensus 968 l~e~PDY~~iI~~PMDLsTIr~RLeN~~Y--------------R----------siea------f~~DVrLI~sNA~tYN 1017 (1051)
+-.+|-|+.+..+|.+|+|++++|.+++| + ++.+ +.|.+.+|..||..|+
T Consensus 92 ~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~at~~~a 171 (1113)
T KOG0644|consen 92 KPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGCATFSIA 171 (1113)
T ss_pred CCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCcccccceeeec
Confidence 34578899999999999999999999999 4 5555 8999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 001569 1018 GRNTDLSTKIKRLSDLVTRT 1037 (1051)
Q Consensus 1018 ep~S~I~k~Ak~L~dvF~~~ 1037 (1051)
.|++ |++.++.+.+++..+
T Consensus 172 kPgt-mvqkmk~ikrLlgH~ 190 (1113)
T KOG0644|consen 172 KPGT-MVQKMKNIKRLLGHR 190 (1113)
T ss_pred CcHH-HHHHHHHHHHHHhhh
Confidence 9999 999999999887654
No 55
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=93.50 E-value=0.026 Score=64.35 Aligned_cols=77 Identities=23% Similarity=0.361 Sum_probs=70.8
Q ss_pred ccccccCCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhcC
Q 001569 965 LKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSSL 1041 (1051)
Q Consensus 965 L~~l~e~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~Lk~L 1041 (1051)
.......|+|+++|..+|+++|.+.+|.+.+|+....+..|..+++.||..||++...+.+.+..+.+++...+...
T Consensus 287 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (371)
T COG5076 287 PVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLEDFVIKKTRLI 363 (371)
T ss_pred cCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchhhhHhhhhhhh
Confidence 34456789999999999999999999999999999999999999999999999999999999999999998876554
No 56
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=92.55 E-value=0.16 Score=51.28 Aligned_cols=60 Identities=18% Similarity=0.366 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHhc
Q 001569 981 PLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1040 (1051)
Q Consensus 981 PMDLsTIr~RLeN~~YRsieaf~~DVrLI~sNA~tYNep~S~I~k~Ak~L~dvF~~~Lk~ 1040 (1051)
|.||.-++++|++++|+++..|.+||-+|+.=+..=-+...++-++--.+.-+|.+.|++
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~ 118 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMES 118 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHH
Confidence 999999999999999999999999999998765433332333333334445566666554
No 57
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=88.49 E-value=1.1 Score=37.49 Aligned_cols=52 Identities=23% Similarity=0.518 Sum_probs=41.2
Q ss_pred CCCCCCeEEEEecCCCCCCCcEEEEEEEEecCCCCCCCCCCCceeEEEEcCCCCccccCCCCccccC
Q 001569 859 NWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFDS 925 (1051)
Q Consensus 859 nWsvGDRFrm~fe~Ed~idgsWw~GtIvsV~p~dp~wPdSPWe~L~VrWDn~~sE~eRVSPWEIEpi 925 (1051)
.|.+|+.|.+.| . ++.||.|+|+++.+ . ..+.|.+.+-+ ..+.|.+.+|.+.
T Consensus 2 ~~~~G~~~~a~~-~----d~~wyra~I~~~~~-------~--~~~~V~f~D~G-~~~~v~~~~l~~l 53 (57)
T smart00333 2 TFKVGDKVAARW-E----DGEWYRARIIKVDG-------E--QLYEVFFIDYG-NEEVVPPSDLRPL 53 (57)
T ss_pred CCCCCCEEEEEe-C----CCCEEEEEEEEECC-------C--CEEEEEEECCC-ccEEEeHHHeecC
Confidence 689999999998 3 58999999999985 1 67899998743 5567777777654
No 58
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=88.42 E-value=1.2 Score=38.17 Aligned_cols=38 Identities=32% Similarity=0.626 Sum_probs=31.8
Q ss_pred CCCCCCeEEEEecCCCCCCCcEEEEEEEEecCCCCCCCCCCCceeEEEEcC
Q 001569 859 NWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKT 909 (1051)
Q Consensus 859 nWsvGDRFrm~fe~Ed~idgsWw~GtIvsV~p~dp~wPdSPWe~L~VrWDn 909 (1051)
.|++|+.+.++|.+ ++.||.|+|+.+.. -.+|.|.++.
T Consensus 2 ~~~~G~~Ve~~~~~----~~~W~~a~V~~~~~---------~~~~~V~~~~ 39 (61)
T smart00743 2 DFKKGDRVEVFSKE----EDSWWEAVVTKVLG---------DGKYLVRYLT 39 (61)
T ss_pred CcCCCCEEEEEECC----CCEEEEEEEEEECC---------CCEEEEEECC
Confidence 58999999999864 68999999999874 3468899877
No 59
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=79.29 E-value=2.1 Score=47.60 Aligned_cols=55 Identities=18% Similarity=0.377 Sum_probs=33.7
Q ss_pred ccCCCCCCeEEEEecCCCCCCCcEEEEEEEEecCCCCCCCCCCCceeEEEEcCCCCccccCCCCcccc
Q 001569 857 QRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTEPTETHLHSPWELFD 924 (1051)
Q Consensus 857 ~rnWsvGDRFrm~fe~Ed~idgsWw~GtIvsV~p~dp~wPdSPWe~L~VrWDn~~sE~eRVSPWEIEp 924 (1051)
...|+|||+|+..|. .+|.||.++|.+|.... ..+.|+++.-+ ..+.|..=+|.+
T Consensus 66 ~~~WkvGd~C~A~~s----~Dg~~Y~A~I~~i~~~~--------~~~~V~f~gYg-n~e~v~l~dL~~ 120 (264)
T PF06003_consen 66 NKKWKVGDKCMAVYS----EDGQYYPATIESIDEED--------GTCVVVFTGYG-NEEEVNLSDLKP 120 (264)
T ss_dssp TT---TT-EEEEE-T----TTSSEEEEEEEEEETTT--------TEEEEEETTTT-EEEEEEGGGEEE
T ss_pred ccCCCCCCEEEEEEC----CCCCEEEEEEEEEcCCC--------CEEEEEEcccC-CeEeeehhhhcc
Confidence 468999999999993 36899999999998521 24558888753 334444444443
No 60
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=78.19 E-value=5 Score=35.75 Aligned_cols=41 Identities=22% Similarity=0.426 Sum_probs=27.3
Q ss_pred CCCCCeEEEEecCCCCCCCcEEEEEEEEecCCCCCCCCCCCceeEEEEcCC
Q 001569 860 WTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTE 910 (1051)
Q Consensus 860 WsvGDRFrm~fe~Ed~idgsWw~GtIvsV~p~dp~wPdSPWe~L~VrWDn~ 910 (1051)
|++|+++.+.-.+ +...+.||.|+|+...... .|.|+|++-
T Consensus 1 F~~G~~VEV~s~e-~g~~gaWf~a~V~~~~~~~---------~~~V~Y~~~ 41 (68)
T PF05641_consen 1 FKKGDEVEVSSDE-DGFRGAWFPATVLKENGDD---------KYLVEYDDL 41 (68)
T ss_dssp --TT-EEEEEE-S-BTT--EEEEEEEEEEETT----------EEEEEETT-
T ss_pred CCCCCEEEEEEcC-CCCCcEEEEEEEEEeCCCc---------EEEEEECCc
Confidence 5789999987644 4459999999999987531 899999764
No 61
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=72.03 E-value=13 Score=33.01 Aligned_cols=42 Identities=31% Similarity=0.629 Sum_probs=30.9
Q ss_pred ccCCCCCCeEEEEecCCCCCCCcEEEEEEEEecCCCCCCCCCCCceeEEEEcCC
Q 001569 857 QRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKTE 910 (1051)
Q Consensus 857 ~rnWsvGDRFrm~fe~Ed~idgsWw~GtIvsV~p~dp~wPdSPWe~L~VrWDn~ 910 (1051)
.+.|..|++++.+|.+ +..||.|.|++.... =..++|.++.+
T Consensus 3 ~~k~~~Ge~V~~rWP~----s~lYYe~kV~~~d~~--------~~~y~V~Y~DG 44 (55)
T PF09465_consen 3 SRKFAIGEVVMVRWPG----SSLYYEGKVLSYDSK--------SDRYTVLYEDG 44 (55)
T ss_dssp SSSS-SS-EEEEE-TT----TS-EEEEEEEEEETT--------TTEEEEEETTS
T ss_pred cccccCCCEEEEECCC----CCcEEEEEEEEeccc--------CceEEEEEcCC
Confidence 3689999999999965 568999999997753 35789999876
No 62
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=48.91 E-value=8.1 Score=50.33 Aligned_cols=78 Identities=9% Similarity=0.036 Sum_probs=62.5
Q ss_pred CCcccccCCCCCCHHHHHHHHHcCCCCCHHHHHH--HHHHHHHhhcccCCCC--------CHHHHHHHHHHHHHHHHHhc
Q 001569 971 KTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKH--DIAVMLSNAESYFGRN--------TDLSTKIKRLSDLVTRTLSS 1040 (1051)
Q Consensus 971 ~PDY~~iI~~PMDLsTIr~RLeN~~YRsieaf~~--DVrLI~sNA~tYNep~--------S~I~k~Ak~L~dvF~~~Lk~ 1040 (1051)
.++|..+|..+||+...-.+++...|..+-+|.. ++.|||.|+..||+.. ..|.+++..+...-....+.
T Consensus 550 ~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issl 629 (1080)
T KOG0732|consen 550 FQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSL 629 (1080)
T ss_pred hHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHH
Confidence 5688899999999999999999999999999999 9999999999999975 34666666665555555555
Q ss_pred CCCCCCCC
Q 001569 1041 LKAPQFHD 1048 (1051)
Q Consensus 1041 L~~~q~~d 1048 (1051)
|..+++.|
T Consensus 630 l~d~~~~~ 637 (1080)
T KOG0732|consen 630 LSDEGTED 637 (1080)
T ss_pred Hhcccccc
Confidence 55554443
No 63
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=43.00 E-value=40 Score=27.24 Aligned_cols=34 Identities=21% Similarity=0.508 Sum_probs=25.6
Q ss_pred CCeEEEEecCCCCCCCcEEEEEEEEecCCCCCCCCCCCceeEEEEcC
Q 001569 863 RDKCKVWWKNESDEDGSWWDGRVLSVKPKSSEFPDSPWERYTVQYKT 909 (1051)
Q Consensus 863 GDRFrm~fe~Ed~idgsWw~GtIvsV~p~dp~wPdSPWe~L~VrWDn 909 (1051)
|+.|.+.|.+ ++.||.|+|+++.+ =..+.|.+.+
T Consensus 1 G~~c~a~~~~----d~~wyra~V~~~~~---------~~~~~V~f~D 34 (48)
T cd04508 1 GDLCLAKYSD----DGKWYRAKITSILS---------DGKVEVFFVD 34 (48)
T ss_pred CCEEEEEECC----CCeEEEEEEEEECC---------CCcEEEEEEc
Confidence 7888888853 58999999999874 1236677765
No 64
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=37.67 E-value=21 Score=46.07 Aligned_cols=22 Identities=50% Similarity=0.486 Sum_probs=12.4
Q ss_pred Ccccccccccccccchhhhhhh
Q 001569 215 ELSESESDLQDSYIESEESGRS 236 (1051)
Q Consensus 215 ~~s~s~~~~~ds~~~~~~~~~~ 236 (1051)
..+.++++.+++.--.++++++
T Consensus 968 ~~~~~~~ds~~~~~~~~~~~~~ 989 (1018)
T KOG2002|consen 968 AESDSDDDSQDSREASEESDRP 989 (1018)
T ss_pred ccCCcccccccccchhhccCCc
Confidence 3455555556665555555555
No 65
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=33.67 E-value=31 Score=38.45 Aligned_cols=42 Identities=24% Similarity=0.524 Sum_probs=31.5
Q ss_pred CceeeehhhHHHHHccCCCCCCeEEEEecCCCCCCCcEEEEEEEEecCC
Q 001569 843 PDFLVERTRFDAAIQRNWTCRDKCKVWWKNESDEDGSWWDGRVLSVKPK 891 (1051)
Q Consensus 843 pDFLVlr~rYd~Am~rnWsvGDRFrm~fe~Ed~idgsWw~GtIvsV~p~ 891 (1051)
.+||.--.+.-++ .|.+|++|...|.+ +++||..+|..+.++
T Consensus 77 ~~~l~~~~~i~a~---~w~vg~K~~A~~~d----dg~~y~AtIe~ita~ 118 (262)
T KOG3026|consen 77 GDYLFYPSRITAV---GWKVGDKVQAVFSD----DGQIYDATIEHITAM 118 (262)
T ss_pred hhhccccccchhc---ccccCCEEEEeecC----CCceEEeehhhccCC
Confidence 4454444444433 89999999999953 689999999998875
No 66
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=25.37 E-value=1.6e+02 Score=27.82 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=28.8
Q ss_pred CCCCCCeEEEEecCCC--CCCCcEEEEEEEEecC--CCCCCCCCCCceeEEE
Q 001569 859 NWTCRDKCKVWWKNES--DEDGSWWDGRVLSVKP--KSSEFPDSPWERYTVQ 906 (1051)
Q Consensus 859 nWsvGDRFrm~fe~Ed--~idgsWw~GtIvsV~p--~dp~wPdSPWe~L~Vr 906 (1051)
..++||-+-+.=+++. ..+..||+|.|+.+.- .+| ..|..++|-
T Consensus 5 ~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~~~ggaR~P----~~~tlFQVa 52 (75)
T PF11302_consen 5 SVKPGDTVIVQDEQEVGQKQDKDWWMGQVIHCEGGARDP----KVPTLFQVA 52 (75)
T ss_pred ccCCCCEEEEecCccccccCCCCcEEEEEEEEeccccCC----CCCceEEEE
Confidence 4578898877544322 2467899999999763 344 346666665
No 67
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.46 E-value=1.4e+02 Score=33.11 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=15.9
Q ss_pred cccccccccccccCCCCCccccccccccc
Q 001569 63 DVMDWEPENEVQSDDNDSEYNVAEEYSTE 91 (1051)
Q Consensus 63 d~m~wEpe~ev~sdD~dSeYn~~ee~ss~ 91 (1051)
|-++|-...=..=|++|.||+..++....
T Consensus 25 de~~~~~~~~f~Eee~D~ef~~~~~eed~ 53 (240)
T PF05764_consen 25 DEFFWNQYGLFQEEEDDEEFESEEEEEDE 53 (240)
T ss_pred hhhhhhhcccccccCCCccccCCCccccc
Confidence 45566554412225778899875443333
No 68
>KOG3228 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.27 E-value=48 Score=36.20 Aligned_cols=45 Identities=36% Similarity=0.375 Sum_probs=25.8
Q ss_pred ccccCccCCCcCCCCccccccCCCcccccccCCCccccchHHHHHHHHhh
Q 001569 145 RRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNARS 194 (1051)
Q Consensus 145 kRnlde~~~~~~~~~~r~rks~~~~k~s~rkssksk~~RPqR~AarNAl~ 194 (1051)
||+|.|.+-.+.+...+.+- +.+..+ ||-+|..|+--.|+-+|-.
T Consensus 60 R~eleerER~~a~~~~~~~~-r~~~~s----~s~sKr~~~d~~a~~~a~~ 104 (226)
T KOG3228|consen 60 RRELEERERAGASSEERARD-REAFTS----SSDSKRDREDQEAQEDAAD 104 (226)
T ss_pred HHHHHHHHhhcccccccccc-hhhccc----ccccccchhhhhhhcchhh
Confidence 45666666532343344443 222221 8889999988777766644
Done!