Query 001569
Match_columns 1051
No_of_seqs 218 out of 760
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 16:08:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001569.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_868-872//hhsearch_pdb/001569hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4alg_A Bromodomain-containing 1.0 1 1 148.1 11.7 109 934-1046 29-139 (154)
2 3ljw_A Protein polybromo-1; al 1.0 1 1 146.8 8.6 84 960-1043 33-116 (120)
3 3k2j_A Protein polybromo-1; PB 1.0 1 1 146.5 8.9 86 960-1045 42-127 (130)
4 3tlp_A Protein polybromo-1; PB 1.0 1 1 146.1 9.0 83 961-1043 51-133 (150)
5 2ri7_A Nucleosome-remodeling f 1.0 1 1 145.8 10.9 106 934-1043 69-174 (174)
6 3d7c_A General control of amin 1.0 1 1 143.9 12.0 104 936-1043 6-109 (112)
7 2dat_A Possible global transcr 1.0 1 1 143.8 12.4 111 934-1044 10-122 (123)
8 3fkm_X Signaling protein; brom 1.0 1 1 143.4 12.5 105 934-1042 18-124 (166)
9 2oss_A HUNK1 protein, bromodom 1.0 1 1 142.7 11.9 107 934-1044 18-126 (127)
10 3nxb_A CAT eye syndrome critic 1.0 1 1 142.7 9.6 99 938-1040 17-115 (116)
No 1
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=1.00 E-value=1 Score=148.13 Aligned_cols=109 Identities=17% Similarity=0.257 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 897899999988899998420010111001223322--588410329999998999999973998999999999999997
Q 001569 934 IDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLS 1011 (1051)
Q Consensus 934 id~E~r~kLls~l~klees~~r~qDryGI~~L~~l~--e~PDY~~iIk~PMDLsTIk~RLeN~~YRsieal~~DVrLI~s 1011 (1051)
+....+..+...+..+.. ....+.+..+++.. ++|+|+.+|+.||||+||++||++++|+++++|..||+|||.
T Consensus 29 ~t~~l~~~~~~il~~l~~----~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~ 104 (154)
T 4alg_A 29 VTNQLQYLHKVVMKALWK----HQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFT 104 (154)
T ss_dssp CBHHHHHHHHTHHHHHHT----STTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH----CCCCHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 509999999999999985----8685320578991322498789883899889999999854899999999999999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 32000799999999999999999999933999997
Q 001569 1012 NAESYFGRNTDLSTKIKRLSDLVTRTLSSLKAPQF 1046 (1051)
Q Consensus 1012 NA~tFNep~S~I~k~Ak~Lsevf~~~LkkL~~~~~ 1046 (1051)
||.+||++++.|+.+|+.|+++|.+.+++++.+..
T Consensus 105 Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~ 139 (154)
T 4alg_A 105 NCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQ 139 (154)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSSCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHC
T ss_conf 99998799999999999999999999997873101
No 2
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=1.00 E-value=1 Score=146.82 Aligned_cols=84 Identities=19% Similarity=0.327 Sum_probs=78.6
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 10012233225884103299999989999999739989999999999999973200079999999999999999999993
Q 001569 960 YGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLS 1039 (1051)
Q Consensus 960 yGI~~L~~l~e~PDY~~iIk~PMDLsTIk~RLeN~~YRsieal~~DVrLI~sNA~tFNep~S~I~k~Ak~Lsevf~~~Lk 1039 (1051)
..+..++....+|+|+.+|+.||||+||++||++++|+++++|..||+|||.||.+||+++|.|+++|+.|+++|.+.++
T Consensus 33 ~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~ 112 (120)
T 3ljw_A 33 ELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKA 112 (120)
T ss_dssp GGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98658998111898698849999999999998159999999999999999999999879999999999999999999999
Q ss_pred CCCC
Q ss_conf 3999
Q 001569 1040 SLKA 1043 (1051)
Q Consensus 1040 kL~~ 1043 (1051)
+++.
T Consensus 113 ~i~~ 116 (120)
T 3ljw_A 113 EIEH 116 (120)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 7442
No 3
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=146.46 Aligned_cols=86 Identities=20% Similarity=0.381 Sum_probs=79.5
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 10012233225884103299999989999999739989999999999999973200079999999999999999999993
Q 001569 960 YGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLS 1039 (1051)
Q Consensus 960 yGI~~L~~l~e~PDY~~iIk~PMDLsTIk~RLeN~~YRsieal~~DVrLI~sNA~tFNep~S~I~k~Ak~Lsevf~~~Lk 1039 (1051)
..+..+++...+|+|+.+|+.||||+||++||++++|+++++|..||+|||.||.+||+++|.|+++|..|+++|.+.++
T Consensus 42 ~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~ 121 (130)
T 3k2j_A 42 EPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKK 121 (130)
T ss_dssp GGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 74037998011766898869988899999998069999999999999999999999889999999999999999999999
Q ss_pred CCCCCC
Q ss_conf 399999
Q 001569 1040 SLKAPQ 1045 (1051)
Q Consensus 1040 kL~~~~ 1045 (1051)
.+...+
T Consensus 122 ~l~~~~ 127 (130)
T 3k2j_A 122 ELARRD 127 (130)
T ss_dssp HHHHHT
T ss_pred HHHHCC
T ss_conf 987023
No 4
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=1.00 E-value=1 Score=146.08 Aligned_cols=83 Identities=18% Similarity=0.297 Sum_probs=77.9
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 00122332258841032999999899999997399899999999999999732000799999999999999999999933
Q 001569 961 GVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYFGRNTDLSTKIKRLSDLVTRTLSS 1040 (1051)
Q Consensus 961 GI~~L~~l~e~PDY~~iIk~PMDLsTIk~RLeN~~YRsieal~~DVrLI~sNA~tFNep~S~I~k~Ak~Lsevf~~~Lkk 1040 (1051)
.+..++....+|+||.+|+.||||+||++||++++|+++++|..||+|||.||.+||+++|.|+++|+.|+++|...++.
T Consensus 51 ~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~ 130 (150)
T 3tlp_A 51 LFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKE 130 (150)
T ss_dssp GGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHCCCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 75579862337589999577778999999985499989999999999999999998799999999999999999999998
Q ss_pred CCC
Q ss_conf 999
Q 001569 1041 LKA 1043 (1051)
Q Consensus 1041 L~~ 1043 (1051)
+..
T Consensus 131 l~~ 133 (150)
T 3tlp_A 131 LGP 133 (150)
T ss_dssp HCC
T ss_pred CCC
T ss_conf 027
No 5
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=1.00 E-value=1 Score=145.82 Aligned_cols=106 Identities=14% Similarity=0.298 Sum_probs=92.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89789999998889999842001011100122332258841032999999899999997399899999999999999732
Q 001569 934 IDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNA 1013 (1051)
Q Consensus 934 id~E~r~kLls~l~klees~~r~qDryGI~~L~~l~e~PDY~~iIk~PMDLsTIk~RLeN~~YRsieal~~DVrLI~sNA 1013 (1051)
+..+.++.|...+..+... .....+..+++...+|+|+.+|+.||||+||++||+++.|+++++|..||+||+.||
T Consensus 69 l~~~~~~~l~~il~~l~~~----~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 144 (174)
T 2ri7_A 69 LTEKDYEGLKRVLRSLQAH----KMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNC 144 (174)
T ss_dssp CCHHHHHHHHHHHHHHHTS----GGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH----HHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7889999999999999960----134435168881228865888089687999999997599999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 000799999999999999999999933999
Q 001569 1014 ESYFGRNTDLSTKIKRLSDLVTRTLSSLKA 1043 (1051)
Q Consensus 1014 ~tFNep~S~I~k~Ak~Lsevf~~~LkkL~~ 1043 (1051)
.+||+++|.|+++|+.|+++|.+.++.+++
T Consensus 145 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 174 (174)
T 2ri7_A 145 RYYNPSDSPFYQCAEVLESFFVQKLKGFKA 174 (174)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 997899899999999999999999986519
No 6
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=1.00 E-value=1 Score=143.91 Aligned_cols=104 Identities=14% Similarity=0.238 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 78999999888999984200101110012233225884103299999989999999739989999999999999973200
Q 001569 936 DDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAES 1015 (1051)
Q Consensus 936 ~E~r~kLls~l~klees~~r~qDryGI~~L~~l~e~PDY~~iIk~PMDLsTIk~RLeN~~YRsieal~~DVrLI~sNA~t 1015 (1051)
+..+..+...+..+.. ......+..+++..++|+|+.+|+.||||+||++||++++|+++++|..||+||+.||.+
T Consensus 6 ~~l~~~~~~il~~l~~----~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~ 81 (112)
T 3d7c_A 6 DQLYTTLKNLLAQIKS----HPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCRE 81 (112)
T ss_dssp HHHHHHHHHHHHHHHH----SGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC----CCCCHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999984----999443168798211448888806785899999998079996999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 0799999999999999999999933999
Q 001569 1016 YFGRNTDLSTKIKRLSDLVTRTLSSLKA 1043 (1051)
Q Consensus 1016 FNep~S~I~k~Ak~Lsevf~~~LkkL~~ 1043 (1051)
||+++|.++.+|+.|+++|.+.++.+..
T Consensus 82 yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 109 (112)
T 3d7c_A 82 YNPPDSEYCRCASALEKFFYFKLKEGGL 109 (112)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8799999999999999999999987778
No 7
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=143.79 Aligned_cols=111 Identities=13% Similarity=0.167 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHC--CHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 8978999999888999984200--10111001223322588410329999998999999973998999999999999997
Q 001569 934 IDDDNRNKLLSAFAKLEQSANR--VQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLS 1011 (1051)
Q Consensus 934 id~E~r~kLls~l~klees~~r--~qDryGI~~L~~l~e~PDY~~iIk~PMDLsTIk~RLeN~~YRsieal~~DVrLI~s 1011 (1051)
.++.....+...+..+....+. ..-...+..+++...+|+|+.+|+.||||+||++||++++|+++++|..||+|||.
T Consensus 10 ~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 89 (123)
T 2dat_A 10 NPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCH 89 (123)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 97999999999999998524126784129765999810077889992898879999999857999999999999999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 320007999999999999999999999339999
Q 001569 1012 NAESYFGRNTDLSTKIKRLSDLVTRTLSSLKAP 1044 (1051)
Q Consensus 1012 NA~tFNep~S~I~k~Ak~Lsevf~~~LkkL~~~ 1044 (1051)
||.+||++++.|+++|..|+++|...+++++..
T Consensus 90 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps~ 122 (123)
T 2dat_A 90 NAQTFNLEGSQIYEDSIVLQSVFKSARQSGPSS 122 (123)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999987999999999999999999999876899
No 8
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=1.00 E-value=1 Score=143.39 Aligned_cols=105 Identities=13% Similarity=0.169 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 897899999988899998420010111001223322--588410329999998999999973998999999999999997
Q 001569 934 IDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLS 1011 (1051)
Q Consensus 934 id~E~r~kLls~l~klees~~r~qDryGI~~L~~l~--e~PDY~~iIk~PMDLsTIk~RLeN~~YRsieal~~DVrLI~s 1011 (1051)
+....+..+...+..+.. ....+.+..+++.. .+|+|+.+|+.||||+||++||++++|+++.+|..||+|||.
T Consensus 18 ~~~~~~~~~~~il~~L~~----~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~ 93 (166)
T 3fkm_X 18 GNKQWYLLANQLILSLSK----YEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFD 93 (166)
T ss_dssp TTHHHHHHHHHHHHHHTT----STTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH----CCCCHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 419999999999999985----8897121488982324499788766899999999999727999799999999999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 3200079999999999999999999993399
Q 001569 1012 NAESYFGRNTDLSTKIKRLSDLVTRTLSSLK 1042 (1051)
Q Consensus 1012 NA~tFNep~S~I~k~Ak~Lsevf~~~LkkL~ 1042 (1051)
||.+||+++|.|+.+|+.|.++|.+.++.+.
T Consensus 94 Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 94 NCSLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHHHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999879999999999999999999999866
No 9
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=1.00 E-value=1 Score=142.71 Aligned_cols=107 Identities=20% Similarity=0.286 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 897899999988899998420010111001223322--588410329999998999999973998999999999999997
Q 001569 934 IDDDNRNKLLSAFAKLEQSANRVQDQYGVQKLKQVS--QKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLS 1011 (1051)
Q Consensus 934 id~E~r~kLls~l~klees~~r~qDryGI~~L~~l~--e~PDY~~iIk~PMDLsTIk~RLeN~~YRsieal~~DVrLI~s 1011 (1051)
.....+..+...+..+.. ....+.+..+++.. .+|+|+.+|+.||||+||++||++++|+++++|..||+|||.
T Consensus 18 ~~~~l~~~~~~il~~L~~----~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~ 93 (127)
T 2oss_A 18 QTNQLQYLLRVVLKTLWK----HQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFT 93 (127)
T ss_dssp CCHHHHHHHHTHHHHHHT----STTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH----CCCCHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 599999999999999994----9554644489982323586489882799999999999986999999999999999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 320007999999999999999999999339999
Q 001569 1012 NAESYFGRNTDLSTKIKRLSDLVTRTLSSLKAP 1044 (1051)
Q Consensus 1012 NA~tFNep~S~I~k~Ak~Lsevf~~~LkkL~~~ 1044 (1051)
||.+||+++|.|+.+|+.|+++|.+.++.|+.+
T Consensus 94 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~~ 126 (127)
T 2oss_A 94 NCYIYNKPGDDIVLMAEALEKLFLQKINELPTE 126 (127)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999987999999999999999999999977888
No 10
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=1.00 E-value=1 Score=142.69 Aligned_cols=99 Identities=14% Similarity=0.293 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999988899998420010111001223322588410329999998999999973998999999999999997320007
Q 001569 938 NRNKLLSAFAKLEQSANRVQDQYGVQKLKQVSQKTNFTNRFPVPLSLDVIQSRLENNYYRGLEAVKHDIAVMLSNAESYF 1017 (1051)
Q Consensus 938 ~r~kLls~l~klees~~r~qDryGI~~L~~l~e~PDY~~iIk~PMDLsTIk~RLeN~~YRsieal~~DVrLI~sNA~tFN 1017 (1051)
....+...+..+.. ..+.+.+..+++...+|+|+.+|+.||||+||++||++++|+++++|..||+|||.||.+||
T Consensus 17 ~~~~~~~il~~l~~----~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 92 (116)
T 3nxb_A 17 DFTAMYKVLDVVKA----HKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYN 92 (116)
T ss_dssp HHHHHHHHHHHHHH----STTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----CCCCHHHCCCCCHHHCCCHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999980----98857655869833166769883899999999999817999899999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999933
Q 001569 1018 GRNTDLSTKIKRLSDLVTRTLSS 1040 (1051)
Q Consensus 1018 ep~S~I~k~Ak~Lsevf~~~Lkk 1040 (1051)
+++|.++.+|+.|+++|.+.+.+
T Consensus 93 ~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 93 GESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999866
Done!