Your job contains 1 sequence.
>001570
MYWLATRNAVVSFPKLRSLSSVFLRSPLRNYSPFRPSTLLLTRRFGQAYCFKDRRSLRGI
TKSSKKVKGSNDNILSDKDLSHIMWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNG
SLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPK
AGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID
HDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHT
SLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNV
TVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIA
STIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEIL
ELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDME
STWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYARE
HEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAG
AKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIEL
DGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGIC
GLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEIC
RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTV
PTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGAS
CVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQL
YSQGFLLANIADGKHRNFGTSSRPVETLTVP
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001570
(1051 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2087193 - symbol:MSH1 "AT3G24320" species:3702... 3707 0. 2
UNIPROTKB|Q0JBW2 - symbol:Os04g0507000 "Os04g0507000 prot... 3252 0. 2
UNIPROTKB|P74926 - symbol:mutS "DNA mismatch repair prote... 307 8.9e-31 2
TAIR|locus:2132233 - symbol:MSH6 "AT4G02070" species:3702... 315 1.3e-29 2
TIGR_CMR|NSE_0335 - symbol:NSE_0335 "DNA mismatch repair ... 310 2.2e-29 2
TIGR_CMR|ECH_0824 - symbol:ECH_0824 "DNA mismatch repair ... 306 6.4e-28 2
UNIPROTKB|Q8TTB4 - symbol:mutS "DNA mismatch repair prote... 290 1.9e-27 2
DICTYBASE|DDB_G0275999 - symbol:msh1 "mutS homolog" speci... 278 1.1e-26 2
UNIPROTKB|Q8A334 - symbol:mutS "DNA mismatch repair prote... 275 8.2e-26 3
UNIPROTKB|Q7NLT8 - symbol:mutS "DNA mismatch repair prote... 266 1.7e-25 2
UNIPROTKB|P49849 - symbol:mutS "DNA mismatch repair prote... 281 3.1e-25 3
TIGR_CMR|BA_3905 - symbol:BA_3905 "DNA mismatch repair pr... 275 4.2e-25 2
UNIPROTKB|O66652 - symbol:mutS "DNA mismatch repair prote... 252 5.8e-25 3
UNIPROTKB|Q7RKG5 - symbol:PY02936 "G/T mismatch binding p... 268 1.7e-24 3
TIGR_CMR|VC_0535 - symbol:VC_0535 "DNA mismatch repair pr... 248 5.3e-24 3
UNIPROTKB|Q89VX1 - symbol:mutS "DNA mismatch repair prote... 264 1.1e-23 2
TIGR_CMR|SPO_0011 - symbol:SPO_0011 "DNA mismatch repair ... 247 1.2e-23 2
UNIPROTKB|A9WFZ9 - symbol:mutS "DNA mismatch repair prote... 297 1.3e-23 3
FB|FBgn0036486 - symbol:Msh6 "Msh6" species:7227 "Drosoph... 273 1.5e-23 2
UNIPROTKB|P23909 - symbol:mutS species:83333 "Escherichia... 256 1.6e-23 2
RGD|2322311 - symbol:Msh6 "mutS homolog 6 (E. coli)" spec... 258 2.4e-23 2
TIGR_CMR|CHY_1397 - symbol:CHY_1397 "DNA mismatch repair ... 258 2.4e-23 2
UNIPROTKB|Q5VR41 - symbol:OJ1174_D05.15 "Os01g0180600 pro... 275 2.5e-23 2
UNIPROTKB|I3LHZ9 - symbol:LOC100739477 "Uncharacterized p... 273 2.7e-23 3
UNIPROTKB|Q3KKQ0 - symbol:mutS "DNA mismatch repair prote... 260 4.8e-23 3
GENEDB_PFALCIPARUM|PF14_0051 - symbol:PF14_0051 "hypothet... 156 5.0e-23 6
UNIPROTKB|Q8IM40 - symbol:PF14_0051 "DNA mismatch repair ... 156 5.0e-23 6
UNIPROTKB|E1B9Q4 - symbol:MSH6 "Uncharacterized protein" ... 274 7.4e-23 3
TIGR_CMR|DET_1219 - symbol:DET_1219 "DNA mismatch repair ... 246 7.5e-23 2
UNIPROTKB|F1PM27 - symbol:MSH6 "Uncharacterized protein" ... 273 8.9e-23 3
UNIPROTKB|P61667 - symbol:mutS "DNA mismatch repair prote... 270 1.0e-22 2
TIGR_CMR|GSU_1822 - symbol:GSU_1822 "DNA mismatch repair ... 270 1.0e-22 2
UNIPROTKB|Q23K54 - symbol:TTHERM_00194810 "MutS domain II... 278 1.4e-22 2
TIGR_CMR|APH_0857 - symbol:APH_0857 "DNA mismatch repair ... 252 1.6e-22 2
TIGR_CMR|SO_3431 - symbol:SO_3431 "DNA mismatch repair pr... 255 3.7e-22 2
UNIPROTKB|F5H2F9 - symbol:MSH6 "DNA mismatch repair prote... 261 5.1e-22 3
UNIPROTKB|J9P5H1 - symbol:MSH6 "Uncharacterized protein" ... 266 5.3e-22 3
UNIPROTKB|B4DF41 - symbol:MSH6 "DNA mismatch repair prote... 261 9.7e-22 3
UNIPROTKB|P52701 - symbol:MSH6 "DNA mismatch repair prote... 261 1.5e-21 3
UNIPROTKB|B1N4L6 - symbol:EHI_123830 "DNA mismatch repair... 286 1.7e-21 1
ZFIN|ZDB-GENE-020905-3 - symbol:msh6 "mutS homolog 6 (E. ... 255 2.3e-21 2
TIGR_CMR|CBU_1056 - symbol:CBU_1056 "DNA mismatch repair ... 228 2.5e-21 2
UNIPROTKB|E1BYJ2 - symbol:MSH6 "Uncharacterized protein" ... 275 3.1e-21 2
UNIPROTKB|E1BWV7 - symbol:MSH6 "Uncharacterized protein" ... 275 3.2e-21 2
MGI|MGI:1343961 - symbol:Msh6 "mutS homolog 6 (E. coli)" ... 261 4.7e-21 3
FB|FBgn0015546 - symbol:spel1 "spellchecker1" species:722... 277 6.8e-21 2
UNIPROTKB|Q7RIF1 - symbol:PY03673 "Phosphatase" species:7... 167 9.3e-21 5
CGD|CAL0001526 - symbol:MSH2 species:5476 "Candida albica... 273 1.0e-20 3
UNIPROTKB|Q8F496 - symbol:mutS "DNA mismatch repair prote... 260 1.0e-20 3
UNIPROTKB|F1SQH4 - symbol:LOC100739713 "Uncharacterized p... 270 3.1e-20 1
UNIPROTKB|A6V1G8 - symbol:mutS "DNA mismatch repair prote... 238 3.2e-20 2
WB|WBGene00003422 - symbol:msh-6 species:6239 "Caenorhabd... 250 5.3e-20 3
UNIPROTKB|Q9N3T8 - symbol:msh-6 "Protein MSH-6" species:6... 250 5.3e-20 3
UNIPROTKB|F1SQH6 - symbol:LOC100739713 "Uncharacterized p... 270 7.9e-20 1
CGD|CAL0006305 - symbol:MSH6 species:5476 "Candida albica... 255 1.0e-19 2
POMBASE|SPCC285.16c - symbol:msh6 "MutS protein homolog" ... 289 1.4e-19 3
WB|WBGene00003418 - symbol:msh-2 species:6239 "Caenorhabd... 276 1.9e-19 2
UNIPROTKB|Q9TXR4 - symbol:msh-2 "Protein MSH-2" species:6... 276 1.9e-19 2
UNIPROTKB|F1PM37 - symbol:MSH2 "Uncharacterized protein" ... 269 1.2e-18 2
TAIR|locus:1005716529 - symbol:MSH7 "AT3G24495" species:3... 258 1.6e-18 3
POMBASE|SPAC8F11.03 - symbol:msh3 "MutS protein homolog 3... 261 2.1e-18 1
POMBASE|SPBC19G7.01c - symbol:msh2 "MutS protein homolog ... 245 3.6e-18 3
UNIPROTKB|Q7S4J6 - symbol:NCU08135 "DNA mismatch repair p... 266 4.7e-18 3
UNIPROTKB|F1NV33 - symbol:MSH2 "Uncharacterized protein" ... 256 5.8e-18 1
UNIPROTKB|F1NFH4 - symbol:MSH2 "Uncharacterized protein" ... 256 5.9e-18 1
UNIPROTKB|E9PHA6 - symbol:MSH2 "DNA mismatch repair prote... 269 6.4e-18 3
UNIPROTKB|P43246 - symbol:MSH2 "DNA mismatch repair prote... 269 6.9e-18 3
UNIPROTKB|G4NEZ2 - symbol:MGG_00704 "DNA mismatch repair ... 263 7.2e-18 2
SGD|S000005450 - symbol:MSH2 "Protein that forms heterodi... 264 8.5e-18 3
RGD|620786 - symbol:Msh2 "mutS homolog 2 (E. coli)" speci... 273 1.0e-17 3
TAIR|locus:2131829 - symbol:MSH3 "AT4G25540" species:3702... 234 2.0e-17 3
ASPGD|ASPL0000041666 - symbol:mshA species:162425 "Emeric... 261 2.3e-17 2
UNIPROTKB|Q5BCM2 - symbol:AN1708.2 "Protein required for ... 261 2.3e-17 2
UNIPROTKB|Q752H0 - symbol:AFR603C "AFR603Cp" species:2848... 263 4.3e-17 3
UNIPROTKB|Q74ZT2 - symbol:AGOS_AGR116W "AGR116Wp" species... 243 5.0e-17 2
DICTYBASE|DDB_G0275809 - symbol:msh2 "mutS homolog" speci... 244 1.3e-16 1
UNIPROTKB|Q3MHE4 - symbol:MSH2 "DNA mismatch repair prote... 257 2.0e-16 2
DICTYBASE|DDB_G0268614 - symbol:msh6 "mutS homolog" speci... 259 3.0e-16 3
UNIPROTKB|Q7R8N0 - symbol:PY07191 "DNA mismatch repair pr... 246 3.7e-16 2
ASPGD|ASPL0000012704 - symbol:AN3749 species:162425 "Emer... 244 3.7e-16 2
UNIPROTKB|Q5B6T1 - symbol:msh3 "DNA mismatch repair prote... 244 3.7e-16 2
RGD|1563954 - symbol:Msh3 "mutS homolog 3 (E. coli)" spec... 213 4.4e-16 1
POMBASE|SPAC13F5.01c - symbol:msh1 "mitochondrial MutS pr... 234 5.1e-16 2
UNIPROTKB|Q76DY7 - symbol:mutS2 "MutS2 protein" species:2... 248 6.6e-16 3
UNIPROTKB|Q7RQK0 - symbol:PY01096 "MutS homolog 2-related... 236 8.3e-16 1
UNIPROTKB|O13396 - symbol:msh-2 "DNA mismatch repair prot... 242 1.1e-15 3
MGI|MGI:101816 - symbol:Msh2 "mutS homolog 2 (E. coli)" s... 257 1.1e-15 3
UNIPROTKB|Q7SD11 - symbol:msh-3 "DNA mismatch repair prot... 243 1.5e-15 4
UNIPROTKB|Q75D87 - symbol:AGOS_ABR137W "ABR137Wp" species... 209 1.7e-15 2
ASPGD|ASPL0000073909 - symbol:AN10621 species:162425 "Eme... 240 1.8e-15 3
DICTYBASE|DDB_G0281683 - symbol:msh3 "mutS homolog" speci... 250 2.3e-15 2
UNIPROTKB|E1B8D2 - symbol:MSH5 "Uncharacterized protein" ... 230 3.5e-15 1
UNIPROTKB|F1LXQ9 - symbol:Msh3 "Protein Msh3" species:101... 204 4.1e-15 1
ZFIN|ZDB-GENE-040426-2932 - symbol:msh2 "mutS homolog 2 (... 238 5.4e-15 2
CGD|CAL0000288 - symbol:orf19.3608 species:5476 "Candida ... 227 6.2e-15 2
UNIPROTKB|Q5BDA1 - symbol:AN1479.2 "DNA-binding protein o... 226 7.2e-15 2
UNIPROTKB|Q81YJ6 - symbol:BAS3289 "Putative MutS family p... 225 7.6e-15 1
TIGR_CMR|BA_3547 - symbol:BA_3547 "MutS family protein, p... 225 7.6e-15 1
SGD|S000002504 - symbol:MSH6 "Protein required for mismat... 228 7.8e-15 2
UNIPROTKB|J9NUN0 - symbol:MSH5 "Uncharacterized protein" ... 222 2.1e-14 1
WARNING: Descriptions of 76 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2087193 [details] [associations]
symbol:MSH1 "AT3G24320" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006298 "mismatch repair" evidence=ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032042 "mitochondrial DNA metabolic process"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0000002 "mitochondrial genome
maintenance" evidence=IGI;IMP] [GO:0009408 "response to heat"
evidence=IGI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0031047 "gene silencing
by RNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] [GO:0051726 "regulation of cell
cycle" evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009411 GO:GO:0003684 GO:GO:0009408 EMBL:AP000382
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF82771 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 EMBL:AY191303
IPI:IPI00526404 RefSeq:NP_189075.2 UniGene:At.43463 HSSP:Q56215
ProteinModelPortal:Q84LK0 SMR:Q84LK0 STRING:Q84LK0 PaxDb:Q84LK0
PRIDE:Q84LK0 EnsemblPlants:AT3G24320.1 GeneID:822021
KEGG:ath:AT3G24320 GeneFarm:4139 TAIR:At3g24320
HOGENOM:HOG000264796 InParanoid:Q84LK0 OMA:RGTETAK PhylomeDB:Q84LK0
ProtClustDB:CLSN2680862 Genevestigator:Q84LK0 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 Uniprot:Q84LK0
Length = 1118
Score = 3707 (1310.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 720/975 (73%), Positives = 817/975 (83%)
Query: 1 MYWLATRNAVVSFPKLRSLSSVFLRSPLRNYSPFRPST-LLLTRRFGQAY-CFKDRRSLR 58
M+W+ATRNAVVSFPK R F RS R YS +PS+ +LL RR+ + C +D +SL+
Sbjct: 1 MHWIATRNAVVSFPKWR----FFFRSSYRTYSSLKPSSPILLNRRYSEGISCLRDGKSLK 56
Query: 59 GITKSSKKVKGSNDNILSDKDLSHIMWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLK 118
IT +SKKVK S+D +L+DKDLSH++WW+ERLQ C+KPSTL L+ RL Y+NLLGLD +L+
Sbjct: 57 RITTASKKVKTSSD-VLTDKDLSHLVWWKERLQTCKKPSTLQLIERLMYTNLLGLDPSLR 115
Query: 119 NGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESI 178
NGSLK+G LNWEMLQFKS+FPREVLLCRVG+FYEAIGIDACILVEYAGLNPFGGLR +SI
Sbjct: 116 NGSLKDGNLNWEMLQFKSRFPREVLLCRVGEFYEAIGIDACILVEYAGLNPFGGLRSDSI 175
Query: 179 PKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVG 238
PKAGCP++NLRQTLDDLTRNGYSVCIVEEVQGPT ARSRK RFISGHAHPGSPYV+GLVG
Sbjct: 176 PKAGCPIMNLRQTLDDLTRNGYSVCIVEEVQGPTPARSRKGRFISGHAHPGSPYVYGLVG 235
Query: 239 IDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFL 298
+DHDLDFP+PMPV+G+SRSA+GYC+ISI ETMK YSL+DGLTE+ALVTKLRT R HHLFL
Sbjct: 236 VDHDLDFPDPMPVVGISRSARGYCMISIFETMKAYSLDDGLTEEALVTKLRTRRCHHLFL 295
Query: 299 HTSLRQNTSGTSRXXXXXXXXXXXXXCIARHFEWFEGDPVIELLLKVKELYGLENEVTFR 358
H SLR N SGT R C +R+FEWFEGD + ELL +VK++YGL++EV+FR
Sbjct: 296 HASLRHNASGTCRWGEFGEGGLLWGECSSRNFEWFEGDTLSELLSRVKDVYGLDDEVSFR 355
Query: 359 NVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYE 418
NV V +NRPRPLHLGTATQIGA+PTEGIPCLLKVLLPS CSGLP LYVRDLLLNPPAY+
Sbjct: 356 NVNVPSKNRPRPLHLGTATQIGALPTEGIPCLLKVLLPSTCSGLPSLYVRDLLLNPPAYD 415
Query: 419 IASTIQAICKLMSKVTCSIPEFTC-----LVKLLELREANHIEFCRIKNVLDEILHMYGN 473
IA IQ CKLMS VTCSIPEFTC LVKLLE REAN+IEFCRIKNVLD++LHM+ +
Sbjct: 416 IALKIQETCKLMSTVTCSIPEFTCVSSAKLVKLLEQREANYIEFCRIKNVLDDVLHMHRH 475
Query: 474 SELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLD-GESDQKICSYDNIP 532
+EL EIL+LLMDPTWVATGLKIDF+T V EC AS IGEMISLD ES Q + DN+P
Sbjct: 476 AELVEILKLLMDPTWVATGLKIDFDTFVNECHWASDTIGEMISLDENESHQNVSKCDNVP 535
Query: 533 SEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPK 592
+EFF DMES+W+GRVK IHIE EI +VE +AEALSLAV EDF PIISRIKATTA LGGPK
Sbjct: 536 NEFFYDMESSWRGRVKGIHIEEEITQVEKSAEALSLAVAEDFHPIISRIKATTASLGGPK 595
Query: 593 GEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEA 652
GEI YAREHE+VWFKGK+F P++WA T GE+QIKQLKPA+DSKG+KVGEEWF+T KVE A
Sbjct: 596 GEIAYAREHESVWFKGKRFTPSIWAGTAGEDQIKQLKPALDSKGKKVGEEWFTTPKVEIA 655
Query: 653 LERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVF 712
L RYHEA AKA+VLELLR LS +LQTKIN+LVFASMLLVI KALF+H EGRRRKWVF
Sbjct: 656 LVRYHEASENAKARVLELLRELSVKLQTKINVLVFASMLLVISKALFSHACEGRRRKWVF 715
Query: 713 PALKDIELD-------GANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKS 765
P L LD GA+ +K+ GLSPYWFD + G+AVHNTVDMQSLFLLTGPNGGGKS
Sbjct: 716 PTLVGFSLDEGAKPLDGASRMKLTGLSPYWFDVSSGTAVHNTVDMQSLFLLTGPNGGGKS 775
Query: 766 SLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV 825
SLLRSICAA+LLGI GLMVPAESA IP+FD+IMLHMKSYDSP DGKSSFQVEMSEIRSIV
Sbjct: 776 SLLRSICAAALLGISGLMVPAESACIPHFDSIMLHMKSYDSPVDGKSSFQVEMSEIRSIV 835
Query: 826 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNA 885
+ TSRSLVLIDEICRGTETAKGTCIAGS++E+LD GCLGIVSTHLHGIFSLPL KN
Sbjct: 836 SQATSRSLVLIDEICRGTETAKGTCIAGSVVESLDTSGCLGIVSTHLHGIFSLPLTAKNI 895
Query: 886 AYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCVM 945
YKAMG E ++GQT PTWKL DG+CRESLAFETAKREGVPE++IQRAE LY++ V
Sbjct: 896 TYKAMGAENVEGQTKPTWKLTDGVCRESLAFETAKREGVPESVIQRAEALYLS--VYAKD 953
Query: 946 IAAREQPPPSIIGAS 960
+A P II +S
Sbjct: 954 ASAEVVKPDQIITSS 968
Score = 421 (153.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 76/102 (74%), Positives = 90/102 (88%)
Query: 941 VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLY 1000
+ C+ I ARE PPPS +G+SCVYVM RPDK+LYIGQTDDL+GRIRAHR KEG+Q +SFLY
Sbjct: 1006 IECLSIGARELPPPSTVGSSCVYVMRRPDKRLYIGQTDDLEGRIRAHRAKEGLQGSSFLY 1065
Query: 1001 FVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSS 1042
+V GKS+ACQ+ETLLINQL+ QG+ LAN+ADGKHRNFGTSS
Sbjct: 1066 LMVQGKSMACQLETLLINQLHEQGYSLANLADGKHRNFGTSS 1107
>UNIPROTKB|Q0JBW2 [details] [associations]
symbol:Os04g0507000 "Os04g0507000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 GO:GO:0009411 GO:GO:0003684
EMBL:AP008210 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 SUPFAM:SSF82771 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 OMA:RGTETAK GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
RefSeq:NP_001053261.1 UniGene:Os.74427 STRING:Q0JBW2 PRIDE:Q0JBW2
EnsemblPlants:LOC_Os04g42784.1 GeneID:4336345 KEGG:osa:4336345
Gramene:Q0JBW2 ProtClustDB:CLSN2694915 Uniprot:Q0JBW2
Length = 1132
Score = 3252 (1149.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 626/978 (64%), Positives = 764/978 (78%)
Query: 4 LATRNAVVSFPK-LRSLSSVFLRSPLR-NYSPFRPSTLLLTRRFGQAYCFKDRRSLRGIT 61
L + V + P+ L + FLR R SP P+ LL RR K R+ R I+
Sbjct: 6 LLASSLVAATPRWLPVAADSFLRRRHRPRCSPL-PA-LLFNRRSWS----KPRKVSRSIS 59
Query: 62 KSSKKVKGSNDNILSDKDLSHIMWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGS 121
S+K+ D + ++ L HI+WW+E+++ CRKPS++ L RL YSN+LGLD L+NGS
Sbjct: 60 IVSRKMNKQGD-LCNEGMLPHILWWKEKMERCRKPSSMQLTQRLVYSNILGLDPTLRNGS 118
Query: 122 LKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKA 181
LK+G+LN EMLQFKSKFPREVLLCRVGDFYEA+G DACILVE+AGLNPFGGLR +SIPKA
Sbjct: 119 LKDGSLNTEMLQFKSKFPREVLLCRVGDFYEAVGFDACILVEHAGLNPFGGLRSDSIPKA 178
Query: 182 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDH 241
GCPV+NLRQTLDDLTR GYSVCIVEE+QGPTQAR+RK RFISGHAHPGSPYVFGL +DH
Sbjct: 179 GCPVMNLRQTLDDLTRCGYSVCIVEEIQGPTQARARKGRFISGHAHPGSPYVFGLAEVDH 238
Query: 242 DLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTS 301
D++FP+PMPV+G+SRSAKGYC+IS+LETMKTYS E+GLTE+A+VTKLR RYHHL+LH+S
Sbjct: 239 DVEFPDPMPVVGISRSAKGYCLISVLETMKTYSAEEGLTEEAVVTKLRICRYHHLYLHSS 298
Query: 302 LRQNTSGTSRXXXXXXXXXXXXXCIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVT 361
LR N+SGTSR C + FEWF+G+P+ ELL KV+E+YGLE + FRNV+
Sbjct: 299 LRNNSSGTSRWGEFGEGGLLWGECSGKSFEWFDGNPIEELLCKVREIYGLEEKTVFRNVS 358
Query: 362 VSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIAS 421
VS E RP+PL+LGTATQIG IPTEGIP LLK++LP N GLP LY+RDLLLNPP++++AS
Sbjct: 359 VSLEGRPQPLYLGTATQIGVIPTEGIPSLLKIVLPPNFGGLPSLYIRDLLLNPPSFDVAS 418
Query: 422 TIQAICKLMSKVTCSIPEFTC-----LVKLLELREANHIEFCRIKNVLDEILHMYGNSEL 476
++Q C+LM +TCSIPEFTC LVKLLE +E NHIEFCRIKNVLDE+L M N+EL
Sbjct: 419 SVQEACRLMGSITCSIPEFTCIPAAKLVKLLESKEVNHIEFCRIKNVLDEVLFMGSNAEL 478
Query: 477 NEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFF 536
+ IL L+DP + TG K++ + LV EC S RI E+ISL GESDQ I S + IP EFF
Sbjct: 479 SAILNKLLDPAAIVTGFKVEADILVNECSFISQRIAEVISLGGESDQAITSSEYIPKEFF 538
Query: 537 EDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEIL 596
DMES+WKGRVKR+H E E + V++AAEALS AV EDFLPIISR+K+ + G KGEI
Sbjct: 539 NDMESSWKGRVKRVHAEEEFSNVDIAAEALSTAVIEDFLPIISRVKSVMSSNGSSKGEIS 598
Query: 597 YAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERY 656
YA+EHE+VWFKG++F P VWA+TPGE QIKQLKPA+DSKGRKVGEEWF+T+KVE AL RY
Sbjct: 599 YAKEHESVWFKGRRFTPNVWANTPGELQIKQLKPAIDSKGRKVGEEWFTTIKVENALTRY 658
Query: 657 HEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALK 716
HEA AK KVLELLRGLSSELQ KIN+LVF S +L+I KALF HVSEGRRR WV P +
Sbjct: 659 HEACDNAKRKVLELLRGLSSELQDKINVLVFCSTMLIITKALFGHVSEGRRRGWVLPTIS 718
Query: 717 DIELDG-----ANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSI 771
+ D ++ ++++G PYW D +G+A+ N V M SLF+LTGPNGGGKSS+LRS+
Sbjct: 719 PLCKDNVTEEISSEMELSGTFPYWLDTNQGNAILNDVHMHSLFILTGPNGGGKSSMLRSV 778
Query: 772 CAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 831
CAA+LLGICGLMVPA SA IP+FD+IMLHMK+YDSPADGKSSFQ+EMSEIRS+V T+R
Sbjct: 779 CAAALLGICGLMVPAASAVIPHFDSIMLHMKAYDSPADGKSSFQIEMSEIRSLVCRATAR 838
Query: 832 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 891
SLVLIDEICRGTETAKGTCIAGSIIE LDN+GC+GI+STHLHGIF LPL + N +KAMG
Sbjct: 839 SLVLIDEICRGTETAKGTCIAGSIIERLDNVGCIGIISTHLHGIFDLPLSLHNTDFKAMG 898
Query: 892 TEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCVMIAAREQ 951
TE +D PTWKL+DGICRESLAF+TA++EG+P+ II+RAE+LY+A N ++
Sbjct: 899 TEIIDRCIQPTWKLMDGICRESLAFQTARKEGMPDLIIRRAEELYLAMSTNSKQTSSAVH 958
Query: 952 PPPSIIGASCVYVMLRPD 969
SI ++ ++ +P+
Sbjct: 959 HEISIANSTVNSLVEKPN 976
Score = 377 (137.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 73/108 (67%), Positives = 84/108 (77%)
Query: 941 VNCVMIAAREQPPPSIIGASCVYVMLRPDKKLYIGQTDDLDGRIRAHRGKEGMQSASFLY 1000
V CV + AREQPPPS +G S +YV++R D KLYIGQTDDL GR+ AHR KEGMQ A+ LY
Sbjct: 1023 VVCVAVGAREQPPPSTVGRSSIYVIIRRDSKLYIGQTDDLVGRLSAHRSKEGMQDATILY 1082
Query: 1001 FVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFGTSSRPVETL 1048
+VPGKSIACQ+ETLLINQL +GF L N ADGKHRNFG S P E +
Sbjct: 1083 ILVPGKSIACQLETLLINQLPLKGFKLINKADGKHRNFGISLVPGEAI 1130
Score = 37 (18.1 bits), Expect = 4.0e-29, Sum P(2) = 4.0e-29
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 813 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIA 852
SF + EI S+VT + L+ + +E + C+A
Sbjct: 988 SFGLLRKEIESVVTTICKKKLLDLYNKRSISELIEVVCVA 1027
>UNIPROTKB|P74926 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243274 "Thermotoga maritima MSB8" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE000512 GenomeReviews:AE000512_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 EMBL:U71155 PIR:C72219 RefSeq:NP_229518.1
ProteinModelPortal:P74926 GeneID:897879 KEGG:tma:TM1719
PATRIC:23938414 Uniprot:P74926
Length = 793
Score = 307 (113.1 bits), Expect = 8.9e-31, Sum P(2) = 8.9e-31
Identities = 91/306 (29%), Positives = 146/306 (47%)
Query: 633 DSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLL 692
+ K V E F T +++E + A + + EL + + E++ +L+ S L
Sbjct: 467 ERKQTLVNSERFITPELKEFETKIMAAKERIEELEKELFKSVCEEVKKHKEVLLEISEDL 526
Query: 693 VIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTV--DM 750
AL + + P + L+ +K G P + + V N + D
Sbjct: 527 AKIDALSTLAYDAIMYNYTKPVFSEDRLE----IK-GGRHPV-VERFTQNFVENDIYMDN 580
Query: 751 QSLFL-LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPAD 809
+ F+ +TGPN GKS+ +R + SL+ G VPA+ A +P FD I M + D A
Sbjct: 581 EKRFVVITGPNMSGKSTFIRQVGLISLMAQIGSFVPAQKAILPVFDRIFTRMGARDDLAG 640
Query: 810 GKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVS 869
G+S+F VEM+E+ I+ +T++SLVL+DE+ RGT T G IA +I E L GC + +
Sbjct: 641 GRSTFLVEMNEMALILLKSTNKSLVLLDEVGRGTSTQDGVSIAWAISEELIKRGCKVLFA 700
Query: 870 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 929
TH + L K + + + T K+VDG+ S E AK G+P+ +I
Sbjct: 701 THFTELTELEKHFPQVQNKTILVKEEGKNVIFTHKVVDGVADRSYGIEVAKIAGIPDRVI 760
Query: 930 QRAEDL 935
RA ++
Sbjct: 761 NRAYEI 766
Score = 120 (47.3 bits), Expect = 8.9e-31, Sum P(2) = 8.9e-31
Identities = 35/109 (32%), Positives = 55/109 (50%)
Query: 122 LKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKA 181
+K L + L+ K ++ +LL R+GDFYEA DA I+ + LN R + P A
Sbjct: 1 MKVTPLMEQYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKV--LN-IVLTRRQDAPMA 57
Query: 182 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 230
G P L L L GY V I ++++ P++++ R ++ PGS
Sbjct: 58 GIPYHALNTYLKKLVEAGYKVAICDQMEEPSKSKKLIRREVTRVVTPGS 106
>TAIR|locus:2132233 [details] [associations]
symbol:MSH6 "AT4G02070" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006290 "pyrimidine dimer repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 InterPro:IPR002999
GO:GO:0005524 GO:GO:0009411 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003684 EMBL:AL161493 SMART:SM00333 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
GO:GO:0006290 EMBL:AF001308 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
EMBL:AF001535 EMBL:AJ245967 IPI:IPI00528681 PIR:T01508
RefSeq:NP_192116.1 UniGene:At.34340 ProteinModelPortal:O04716
SMR:O04716 STRING:O04716 PaxDb:O04716 PRIDE:O04716
EnsemblPlants:AT4G02070.1 GeneID:828147 KEGG:ath:AT4G02070
TAIR:At4g02070 HOGENOM:HOG000243127 InParanoid:O04716 KO:K08737
OMA:YHMDAVI PhylomeDB:O04716 ProtClustDB:CLSN2685718
ArrayExpress:O04716 Genevestigator:O04716 GermOnline:AT4G02070
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 Uniprot:O04716
Length = 1324
Score = 315 (115.9 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 105/317 (33%), Positives = 154/317 (48%)
Query: 634 SKGRKVGEEWFSTLK--VEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASML 691
S + V W T+K ++E + E + K+ + + L G E Q K LV A+
Sbjct: 951 SSKKGVSRYWTPTIKKLLKELSQAKSEKESALKS-ISQRLIGRFCEHQEKWRQLVSATAE 1009
Query: 692 L-VIGKALFAHVS-EGRRRKWVFPALKDIELDGANCLKMNGLS-PYWF-DA-AEGSAVHN 746
L V+ FA S EG R + P + DG L GL P D+ GS V N
Sbjct: 1010 LDVLISLAFASDSYEGVRCR---PVISGSTSDGVPHLSATGLGHPVLRGDSLGRGSFVPN 1066
Query: 747 TV-----DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHM 801
V + S LLTGPN GGKS+LLR +C A +L G VPAE+ + D I + M
Sbjct: 1067 NVKIGGAEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDKICVRM 1126
Query: 802 KSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET-LD 860
+ D G+S+F E+SE ++T+ T SLV++DE+ RGT T+ G IA S++E ++
Sbjct: 1127 GAKDHIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIE 1186
Query: 861 NIGCLGIVSTHLHGI---FSLPLKIKNAAYKAMGTEYLDGQTVPT--WKLVDGICRESLA 915
+ C G STH H + + K+ E + G T ++L G C +S
Sbjct: 1187 KVQCRGFFSTHYHRLSVDYQTNPKVSLCHMACQIGEGIGGVEEVTFLYRLTPGACPKSYG 1246
Query: 916 FETAKREGVPETIIQRA 932
A+ G+P+ ++QRA
Sbjct: 1247 VNVARLAGLPDYVLQRA 1263
Score = 108 (43.1 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 28/97 (28%), Positives = 45/97 (46%)
Query: 122 LKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKA 181
L G W +FK+K +V+ ++G FYE +DA + + + G +P
Sbjct: 379 LTGGQRQW--WEFKAKHMDKVVFFKMGKFYELFEMDAHVGAKELDIQYMKGEQPH----C 432
Query: 182 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRK 218
G P N ++ L R GY V +VE+ + P Q R+
Sbjct: 433 GFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRR 469
>TIGR_CMR|NSE_0335 [details] [associations]
symbol:NSE_0335 "DNA mismatch repair protein MutS"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_506224.1 STRING:Q2GE72
GeneID:3931998 KEGG:nse:NSE_0335 PATRIC:22680759
ProtClustDB:CLSK2528033 BioCyc:NSEN222891:GHFU-360-MONOMER
Uniprot:Q2GE72
Length = 815
Score = 310 (114.2 bits), Expect = 2.2e-29, Sum P(2) = 2.2e-29
Identities = 96/301 (31%), Positives = 156/301 (51%)
Query: 644 FSTLKVEEALERYHEAGAKAKAKVLELLR---G--LSSELQTKINILVFASMLLVIGKAL 698
++TL+++ + +A + LEL R G L+SE K I A + ++ A
Sbjct: 505 YTTLELQNLEAQIAKANENYRKLELELFRELCGKILASEGPLKEMIAAIAELDVI---AS 561
Query: 699 FAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQS---LFL 755
FA ++ +RK+V P ++D +N L+++G + F + V N + S + +
Sbjct: 562 FAEIAV--QRKYVRP-----QVDNSNELRISG-GRHPFVEQVNAFVPNDLAFTSAERVCV 613
Query: 756 LTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 815
LTGPN GKS+ LR ++L G VPA+SA I D + + + D+ A GKS+F
Sbjct: 614 LTGPNMAGKSTYLRQNALITILAQMGSFVPADSAHIGVVDRVFSRIGASDNIAMGKSTFM 673
Query: 816 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHG 874
VEM E +IV T RSLV++DE+ RGT T G IA +++E L D++ C I +TH +
Sbjct: 674 VEMMETANIVNNATCRSLVILDEVGRGTSTLDGISIAQAVLEYLHDSVNCKTIFATHYNE 733
Query: 875 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 934
+ L K+ ++ + + + +K+V G S TA G+PE II+RA +
Sbjct: 734 LCDLESKLPRMKCYSIEVKRWRDEVLLMYKIVPGRGDNSYGIHTAMLSGIPEAIIRRATE 793
Query: 935 L 935
+
Sbjct: 794 I 794
Score = 104 (41.7 bits), Expect = 2.2e-29, Sum P(2) = 2.2e-29
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 132 LQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPF--GGLRPESIPKAGCPVVNLR 189
L+ + ++P V+ RVGDFYE DA + GL+ G + + IP G PV +
Sbjct: 13 LEVRCQYPDAVVFYRVGDFYEMFFEDAREVSHLLGLHLTRRGTYKGKDIPMCGVPVSSCE 72
Query: 190 QTLDDLTRNGYSVCIVEEVQGPTQARSR 217
++ L + G V I E+++ +A+ R
Sbjct: 73 VYINKLVKLGRKVAICEQLETAEEAKKR 100
>TIGR_CMR|ECH_0824 [details] [associations]
symbol:ECH_0824 "DNA mismatch repair protein MutS"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_507620.1
ProteinModelPortal:Q2GG13 STRING:Q2GG13 GeneID:3926941
KEGG:ech:ECH_0824 PATRIC:20577070
BioCyc:ECHA205920:GJNR-827-MONOMER Uniprot:Q2GG13
Length = 804
Score = 306 (112.8 bits), Expect = 6.4e-28, Sum P(2) = 6.4e-28
Identities = 72/199 (36%), Positives = 106/199 (53%)
Query: 741 GSAVHNTVD---MQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 797
G V N +D MQ + L+TGPN GKS+ LR +L G VPA+ A I D +
Sbjct: 594 GKFVANDIDLSLMQRVHLITGPNMAGKSTFLRQNALIGILAHIGSFVPAQHAHIGVIDKV 653
Query: 798 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 857
+ + D+ A G S+F VEM+E +I+ T +S V++DEI RGT T G IA S+IE
Sbjct: 654 FSRVGASDNIASGHSTFMVEMTETAAIINQATDKSFVILDEIGRGTGTYDGLSIAWSVIE 713
Query: 858 TLDNIG-CLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAF 916
+ N+ I +TH H + L ++N M E +G+ V +++ G +S
Sbjct: 714 QIHNVNKSRAIFATHYHELSKLDRYLENIKCFCMKVEEWNGKVVFLHEIIPGSTNKSYGI 773
Query: 917 ETAKREGVPETIIQRAEDL 935
AK G P++++ RAEDL
Sbjct: 774 HVAKLAGFPQSVLDRAEDL 792
Score = 94 (38.1 bits), Expect = 6.4e-28, Sum P(2) = 6.4e-28
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 130 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLR 189
+ + KS++ +L R+GDFYE DA +E + + + ++P G P +
Sbjct: 13 QYMMLKSQYKEYLLFYRLGDFYELFFDDA---IETSRILNIVLTKKGNVPMCGVPFHSSE 69
Query: 190 QTLDDLTRNGYSVCIVEEVQGPTQARSR 217
L+ L + GY + I E+++ +A+ R
Sbjct: 70 SYLNRLVKLGYKIAICEQLETSEEAKKR 97
>UNIPROTKB|Q8TTB4 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:188937 "Methanosarcina acetivorans C2A" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE010299 GenomeReviews:AE010299_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_615487.1 ProteinModelPortal:Q8TTB4
GeneID:1472415 KEGG:mac:MA0523 BioCyc:MACE188937:GI2O-590-MONOMER
Uniprot:Q8TTB4
Length = 900
Score = 290 (107.1 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 75/215 (34%), Positives = 114/215 (53%)
Query: 729 NGLSPYWFDAAEGSAVHNTVDM---QSLFLL-TGPNGGGKSSLLRSICAASLLGICGLMV 784
+G P G V N +M ++ FLL TGPN GKS+ +R +++ G V
Sbjct: 604 DGRHPVVESTVSGGFVPNDTEMDCKENQFLLVTGPNMAGKSTYMRQTALIAIMAQVGSFV 663
Query: 785 PAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTE 844
PA AS+ D + + ++D A G+S+F VEM E+ +I+ + +SLVL+DEI RGT
Sbjct: 664 PASYASVGIIDQVFTRIGAFDDLASGQSTFMVEMVELANILNNASPKSLVLLDEIGRGTS 723
Query: 845 TAKGTCIAGSIIETLDNIGCLGI---VSTHLHGIFSLPLKIKNAAYKAMGTEYLDG-QTV 900
T G IA +++E L N G +GI +TH H + +L K+K + + DG + V
Sbjct: 724 TYDGYSIAKAVVEFLHNRGKVGIRALFATHYHQLTALEEKLKRVKNYHIAVKE-DGHELV 782
Query: 901 PTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 935
K+V G S A+ GVPE +I+RA ++
Sbjct: 783 FLRKIVPGATDRSYGIHVARLAGVPEKVIERANEI 817
Score = 108 (43.1 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 135 KSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRP-ESIPKAGCPVVNLRQT 191
K +P ++ R+GDFYE+ G DA + + L G R E +P AG P +
Sbjct: 16 KQAYPDTLIFFRMGDFYESFGEDAKTIAKELEITLTARGKDRTGERMPLAGIPYHAIDTY 75
Query: 192 LDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 230
L L GY V I E+++ P +A+ R + PG+
Sbjct: 76 LPRLINKGYKVAICEQLEDPKKAKGVVKRGVVRVVTPGT 114
>DICTYBASE|DDB_G0275999 [details] [associations]
symbol:msh1 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISS;IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0275999
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0006298 GO:GO:0008094 GO:GO:0043504
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
GO:GO:0032139 OMA:ITQTVRD RefSeq:XP_643371.1 STRING:Q552L1
EnsemblProtists:DDB0232360 GeneID:8620254 KEGG:ddi:DDB_G0275999
InParanoid:Q552L1 ProtClustDB:CLSZ2729174 Uniprot:Q552L1
Length = 898
Score = 278 (102.9 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 64/189 (33%), Positives = 104/189 (55%)
Query: 748 VDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSP 807
+D +L+L+TGPN GGKS+ LR L+ G VPA A I DAI + S D
Sbjct: 690 IDDANLWLITGPNMGGKSTFLRQNALIILMAQMGSFVPASYAKIGIVDAIFSRVGSSDDL 749
Query: 808 ADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLG 866
++ KS+F VEM E SI+ T+RS V++DE+ RGT T G IA S++E L+ + C
Sbjct: 750 SNDKSTFMVEMVETASILKKATNRSFVIMDEVGRGTSTLDGISIAQSVVEYLNQVNRCRT 809
Query: 867 IVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 926
+ +TH H + + + + + + + + T K+V G+ +S AK G+P
Sbjct: 810 LFATHYHELTKNLDETPHIKCYCLAIQEDEDEILFTHKIVPGMSNKSYGIFCAKMAGIPN 869
Query: 927 TIIQRAEDL 935
++++R++ +
Sbjct: 870 SVLERSKSI 878
Score = 113 (44.8 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 34/106 (32%), Positives = 49/106 (46%)
Query: 134 FKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN----PFGGLRPESIPKAGCPVVNLR 189
FK K+P E+L R+GDFYE DA I G+ G R IP G P +
Sbjct: 7 FKKKYPNEILFFRLGDFYEMFDEDAKIASNLLGITLTSRKQGKNRNREIPMCGVPSHSAE 66
Query: 190 QTLDDLTRNGYSVCIVEEVQGPTQARSRK---SRFISGHAHPGSPY 232
+ L + G SV I ++V+ +A+ + +R I PG+ Y
Sbjct: 67 IHIAKLVKLGKSVAICDQVEDSNEAKEGRRIINRQIVRIITPGTLY 112
>UNIPROTKB|Q8A334 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_812033.1
ProteinModelPortal:Q8A334 GeneID:1075929 KEGG:bth:BT_3121
PATRIC:21061245 BioCyc:BTHE226186:GJXV-3185-MONOMER Uniprot:Q8A334
Length = 862
Score = 275 (101.9 bits), Expect = 8.2e-26, Sum P(3) = 8.2e-26
Identities = 98/318 (30%), Positives = 152/318 (47%)
Query: 638 KVGEEWF--STLK-----VEEALERYHEA--GAKAKAKVLE--LLRGLSSELQTKI-NIL 685
KV +EW TL + + L+ Y E GA+ K VLE L L L I I
Sbjct: 475 KVPQEWIRKQTLVNAERYITQELKVYEEKILGAEDKILVLETQLYTDLVQALTEFIPQIQ 534
Query: 686 VFASMLLVIGKAL-FAHVSEGRRRKWVFPALKDIE-LD---GANCLKMNGLSPYWFDAAE 740
+ A+ + + L FA+V+ R ++ P ++D + LD G + + L P
Sbjct: 535 INANQIARLDCLLSFANVA--RENNYIRPVIEDNDVLDIRQGRHPVIEKQL-PIGEKYIA 591
Query: 741 GSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 800
+ ++ Q + ++TGPN GKS+LLR +LL G VPAESA I D I
Sbjct: 592 NDVMLDSASQQ-IIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKIFTR 650
Query: 801 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 860
+ + D+ + G+S+F VEM+E I+ +SRSLVL DE+ RGT T G IA +I+E +
Sbjct: 651 VGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYDGISIAWAIVEYIH 710
Query: 861 N---IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 917
+ +TH H + + K + + +D + + KL G S
Sbjct: 711 EHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRKLERGGSEHSFGIH 770
Query: 918 TAKREGVPETIIQRAEDL 935
AK G+P++I++RA +
Sbjct: 771 VAKMAGMPKSIVKRANTI 788
Score = 112 (44.5 bits), Expect = 8.2e-26, Sum P(3) = 8.2e-26
Identities = 33/102 (32%), Positives = 46/102 (45%)
Query: 130 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 187
+ L K+K P V+L R GDFYE DA + E G L + ++I AG P
Sbjct: 4 QFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAGFPHHA 63
Query: 188 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 229
L L L R G V I ++++ P + R I+ PG
Sbjct: 64 LDTYLPKLIRAGKRVAICDQLEDPKLTKKLVKRGITELVTPG 105
Score = 42 (19.8 bits), Expect = 8.2e-26, Sum P(3) = 8.2e-26
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 461 KNVLDEILHMYGNSE--LNEILELLMDPTWVATGLKIDFETL--VEECRL----ASV-RI 511
K +++E LH+ G+ E ++++ + P V LK+ + + +++ L AS+ RI
Sbjct: 326 KELIEEQLHLIGDLERIISKVAVGRVSPREVVQ-LKVALQAIEPIKQACLEADNASLNRI 384
Query: 512 GEMISL 517
GE ++L
Sbjct: 385 GEQLNL 390
Score = 38 (18.4 bits), Expect = 3.4e-18, Sum P(3) = 3.4e-18
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 58 RGITKSSKKVKGSNDNILSDKD 79
RGIT+ NDN+L+ K+
Sbjct: 96 RGITELVTPGVSINDNVLNYKE 117
>UNIPROTKB|Q7NLT8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:251221 "Gloeobacter violaceus PCC 7421" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000045 GenomeReviews:BA000045_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_923979.1 ProteinModelPortal:Q7NLT8
GeneID:2599151 KEGG:gvi:gvip140 PATRIC:22041477
BioCyc:GVIO251221:GH9A-1085-MONOMER Uniprot:Q7NLT8
Length = 890
Score = 266 (98.7 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 65/181 (35%), Positives = 93/181 (51%)
Query: 753 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 812
L +LTGPN GKSS +R + LL G VPA A + D I + + D A G+S
Sbjct: 680 LIILTGPNMSGKSSFIRQVALIQLLAQVGAFVPARGAVLGVADRIFTRVGAVDDLATGQS 739
Query: 813 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 871
+F VEM+E +I+ T RSLVL+DEI RGT T G IA ++ E L +I C I +TH
Sbjct: 740 TFMVEMTETANILNHATPRSLVLLDEIGRGTATFDGLAIAWAVAEYLASHIRCRTIFATH 799
Query: 872 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 931
H + L + A + + L + V ++ G S E + G+P +++ R
Sbjct: 800 YHELNELASVVSGVANYQVTVQELADRIVFLHRVTPGGADRSYGIEVGRLAGLPPSVVAR 859
Query: 932 A 932
A
Sbjct: 860 A 860
Score = 114 (45.2 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 31/91 (34%), Positives = 47/91 (51%)
Query: 130 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 186
+ ++ K++ P +LL R+GDFYE DA I+ +E G + IP AG P
Sbjct: 27 QYVEVKAQHPHCLLLYRMGDFYETFLADAEIVSRELEIVLTGRQAGDKIGRIPMAGIPHH 86
Query: 187 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSR 217
L + L GY+V I ++V+ P QA+ R
Sbjct: 87 ALERYCAQLIEKGYAVVICDQVESPEQAKER 117
>UNIPROTKB|P49849 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0030983
GO:GO:0008094 EMBL:U27343 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
GO:GO:0032300 KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 PIR:C69663
RefSeq:NP_389586.2 ProteinModelPortal:P49849 SMR:P49849
EnsemblBacteria:EBBACT00000003342 GeneID:939501 KEGG:bsu:BSU17040
PATRIC:18975215 GenoList:BSU17040 BioCyc:BSUB:BSU17040-MONOMER
Uniprot:P49849
Length = 858
Score = 281 (104.0 bits), Expect = 3.1e-25, Sum P(3) = 3.1e-25
Identities = 65/188 (34%), Positives = 100/188 (53%)
Query: 749 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 808
D + + L+TGPN GKS+ +R I S++ G VPA+ A +P FD I + + D
Sbjct: 593 DNRQMLLITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIFTRIGAADDLI 652
Query: 809 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 867
G+S+F VEM E ++ + T SL+L DEI RGT T G +A +IIE + D+IG +
Sbjct: 653 SGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTL 712
Query: 868 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 927
STH H + L K+ + E +G V ++ +G +S A+ +P
Sbjct: 713 FSTHYHELTVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPGD 772
Query: 928 IIQRAEDL 935
+I RA+D+
Sbjct: 773 LIARAQDI 780
Score = 100 (40.3 bits), Expect = 3.1e-25, Sum P(3) = 3.1e-25
Identities = 46/161 (28%), Positives = 71/161 (44%)
Query: 130 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 186
+ L+ K++ L R+GDFYE DA +E + GG E IP G P
Sbjct: 10 QYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAA-EKIPMCGVPYH 68
Query: 187 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFP 246
+ ++ L + GY V I E+ + P A+ R + PG+ V GI H+
Sbjct: 69 SASAYIEQLIKKGYKVAICEQTEDPKAAKGVVKREVVQLITPGT--VMDGKGI-HE---S 122
Query: 247 EPMPVIGVSRSAKGYCI-ISILETMKTYS-----LEDGLTE 281
E + VS + GY + +S L T + + LED ++E
Sbjct: 123 ENNFIASVSACSNGYGLALSDLTTGENLAVLIERLEDVISE 163
Score = 42 (19.8 bits), Expect = 3.1e-25, Sum P(3) = 3.1e-25
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 329 HFEWFEGDPVIELLLKVKELYGLENEVTFRNV 360
HF FE + + E L +V +L L V F NV
Sbjct: 318 HF--FEREDLRERLKEVYDLERLAGRVAFGNV 347
>TIGR_CMR|BA_3905 [details] [associations]
symbol:BA_3905 "DNA mismatch repair protein MutS"
species:198094 "Bacillus anthracis str. Ames" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006298
GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_846152.1
RefSeq:YP_020544.1 RefSeq:YP_029871.1 ProteinModelPortal:Q81WR3
DNASU:1087964 EnsemblBacteria:EBBACT00000010607
EnsemblBacteria:EBBACT00000017303 EnsemblBacteria:EBBACT00000020116
GeneID:1087964 GeneID:2814777 GeneID:2848878 KEGG:ban:BA_3905
KEGG:bar:GBAA_3905 KEGG:bat:BAS3618
BioCyc:BANT260799:GJAJ-3677-MONOMER
BioCyc:BANT261594:GJ7F-3794-MONOMER Uniprot:Q81WR3
Length = 892
Score = 275 (101.9 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 86/288 (29%), Positives = 148/288 (51%)
Query: 662 KAKAKVLELLRGLSSELQTKINILV--FASMLLVIGKA----LFAHVSEGRRRKWVFPAL 715
+A+ K+++L L + L+ ++ + + + VI + FA VSE ++V P L
Sbjct: 507 EAEEKIVQLEYDLFTALREEVKVFIPKLQHLAKVISELDVLQSFATVSE--EEQFVKPVL 564
Query: 716 ---KDIEL-DGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSI 771
++I + DG + + L+ + + +D+ FL+TGPN GKS+ +R +
Sbjct: 565 TTKREIFIKDGRHPVVEKVLNGKLY-VPNDCIMPENMDV---FLITGPNMSGKSTYMRQL 620
Query: 772 CAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 831
+++ G VPA A +P FD I + + D G+S+F VEM E ++ + + R
Sbjct: 621 ALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASER 680
Query: 832 SLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLP--L-KIKNAAY 887
SL+L DEI RGT T G +A +IIE + D IG + STH H + L L ++KN
Sbjct: 681 SLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVHV 740
Query: 888 KAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 935
A+ +G+ V K+ DG +S A+ +P+++I RA+++
Sbjct: 741 SAIEE---NGKVVFLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEV 785
Score = 101 (40.6 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 29/104 (27%), Positives = 46/104 (44%)
Query: 130 EMLQFKSKFPREVLLCRVGDFYEAI---GIDACILVEYAGLNPFGGLRPESIPKAGCPVV 186
+ L+ K+ + L R+GDFYE + A +E + GG E IP G P
Sbjct: 10 QYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGG-SSERIPMCGVPYH 68
Query: 187 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 230
+ ++ L GY V + E+V+ P A+ R + PG+
Sbjct: 69 AAKNYIEQLVEKGYKVAVCEQVEDPKTAKGVVRREVVQLITPGT 112
>UNIPROTKB|O66652 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224324 "Aquifex aeolicus VF5" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE000657 GenomeReviews:AE000657_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 PIR:H70327 RefSeq:NP_213212.1
ProteinModelPortal:O66652 GeneID:1192886 KEGG:aae:aq_308
PATRIC:20958222 HOGENOM:HOG000221406 OMA:ITQTVRD
BioCyc:AAEO224324:GJBH-228-MONOMER Uniprot:O66652
Length = 859
Score = 252 (93.8 bits), Expect = 5.8e-25, Sum P(3) = 5.8e-25
Identities = 79/292 (27%), Positives = 137/292 (46%)
Query: 651 EALERYHEAGAKAKAKVLELLRGLSSELQTKI--NILVFASMLLVIGKALFAH-VSE-GR 706
E L+R E A+ ++ +L L EL+ ++ + + + + F +++
Sbjct: 498 EELQRLEEKILSAQTRINDLEYELYKELRERVVKELDKVGNNASAVAEVDFIQSLAQIAY 557
Query: 707 RRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNT-VDMQS-LFLLTGPNGGGK 764
+ W P + + G + G P + E ++T +D S + ++TGPN GK
Sbjct: 558 EKDWAKPQIHE----GYELIIEEGRHPVIEEFVENYVPNDTKLDRDSFIHVITGPNMAGK 613
Query: 765 SSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI 824
SS +R + +LL G +PA A IP DA+ + S D A G S+F EM E+ +I
Sbjct: 614 SSYIRQVGVLTLLSHIGSFIPARRAKIPVVDALFTRIGSGDVLALGVSTFMNEMLEVSNI 673
Query: 825 VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLPLKIK 883
+ T +SLV++DE+ RGT T G I+ +I++ + + + +++TH I L KI+
Sbjct: 674 LNNATEKSLVILDEVGRGTSTYDGIAISKAIVKYISEKLKAKTLLATHFLEITELEGKIE 733
Query: 884 NAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 935
M E + L +G S E AK G+PE +++ A +
Sbjct: 734 GVKNYHMEVEKTPEGIRFLYILKEGKAEGSFGIEVAKLAGLPEEVVEEARKI 785
Score = 125 (49.1 bits), Expect = 5.8e-25, Sum P(3) = 5.8e-25
Identities = 35/101 (34%), Positives = 50/101 (49%)
Query: 134 FKSKFPREVLLCRVGDFYEAIGIDACILVEYAGL----NPFGGLRPESIPKAGCPVVNLR 189
FK+++P +LL R+GDFYE DA I + GL P G E IP G P +
Sbjct: 18 FKNQYPDCLLLFRLGDFYELFYEDAYIGSKELGLVLTSRP-AGKGKERIPMCGVPYHSAN 76
Query: 190 QTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 230
+ L GY V I E+V+ P++A+ R + PG+
Sbjct: 77 SYIAKLVNKGYKVAICEQVEDPSKAKGIVKREVVRVITPGT 117
Score = 45 (20.9 bits), Expect = 5.8e-25, Sum P(3) = 5.8e-25
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 628 LKPAVDSKGRKVGEEWFSTLKV--EEALERYHEAGAK 662
+K + KG K+ EE LKV E E + E G++
Sbjct: 167 IKEILVKKGEKLPEELEKVLKVYVSELEEEFFEEGSE 203
Score = 40 (19.1 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 21/93 (22%), Positives = 40/93 (43%)
Query: 51 FKDRRSLRGITKSSKKVKGSNDNILSDKDLSHIMWWQERLQMCRKPSTLHLVNRLKYSNL 110
F+ R + I + +++K + + +L + + M ERL + + S + L Y
Sbjct: 306 FRSREKIERIQEGVQELKENREALLKIRQILEGMADLERL-VSKISSNMATPRELVY--- 361
Query: 111 LGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 143
LKN K L +L+ K+ +E+L
Sbjct: 362 ------LKNSLKKVEELRLLLLELKAPIFKEIL 388
>UNIPROTKB|Q7RKG5 [details] [associations]
symbol:PY02936 "G/T mismatch binding protein-related"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
KO:K08737 InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 EMBL:AABL01000828
RefSeq:XP_730891.1 ProteinModelPortal:Q7RKG5 STRING:Q7RKG5
GeneID:3830116 KEGG:pyo:PY02936 EuPathDB:PlasmoDB:PY02936
Uniprot:Q7RKG5
Length = 1261
Score = 268 (99.4 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 66/189 (34%), Positives = 100/189 (52%)
Query: 749 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 808
+ ++ LLTGPN GGKS+LLR + +L G VP+ + D I + S D+
Sbjct: 1005 EKETTLLLTGPNMGGKSTLLRQTAISVILAQIGAFVPSTYCELTIVDKIFTRLGSSDNLF 1064
Query: 809 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 867
+GKS+F VE+ +I +++ +T SL ++DE+ RGT + GT IA S +E + D I C I
Sbjct: 1065 EGKSTFLVELEDISNLLKQSTKYSLAILDELGRGTSSFDGTAIALSTLEQISDVIKCRCI 1124
Query: 868 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQT--VPTWKLVDGICRESLAFETAKREGVP 925
STH H + N + M D Q + +K + GIC +S AK G+P
Sbjct: 1125 FSTHYHLLVEEVKHNTNISNYHMSLSIDDDQEKIIFLYKFIKGICPKSFGIHIAKLAGLP 1184
Query: 926 ETIIQRAED 934
+ II+ A +
Sbjct: 1185 KEIIELAHE 1193
Score = 110 (43.8 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 133 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTL 192
+ KSK +++ ++G FYE IDACI+ GLN G E P G P +L
Sbjct: 309 KIKSKNFDKIIFFKMGRFYEIFYIDACIMHTICGLNWMNG---EQKPHLGFPEQSLHLYA 365
Query: 193 DDLTRNGYSVCIVEEVQGPTQARSR 217
+ +G+ V ++E+++ P + R
Sbjct: 366 KKVINSGHKVVVIEQMETPKELEQR 390
Score = 46 (21.3 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 529 DNIPSEFFEDME--STWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRI 581
DN+P F +++E S KG V RI E EI + E + + P +I
Sbjct: 836 DNVPKSFLKEVEITSVKKGFV-RIQNE-EIKNLVEMLEDIEQEKKDAIYPFFQKI 888
>TIGR_CMR|VC_0535 [details] [associations]
symbol:VC_0535 "DNA mismatch repair protein MutS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD PIR:B82312 RefSeq:NP_230186.1 ProteinModelPortal:Q9KUI6
SMR:Q9KUI6 DNASU:2615204 GeneID:2615204 KEGG:vch:VC0535
PATRIC:20080174 Uniprot:Q9KUI6
Length = 862
Score = 248 (92.4 bits), Expect = 5.3e-24, Sum P(3) = 5.3e-24
Identities = 65/182 (35%), Positives = 96/182 (52%)
Query: 753 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 812
+ ++TGPN GGKS+ +R +L+ G VPAESASI D I + + D A G+S
Sbjct: 616 MLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRS 675
Query: 813 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 871
+F VEM+E +I+ T SLVL+DEI RGT T G +A + E L IG + + +TH
Sbjct: 676 TFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFATH 735
Query: 872 LHGIFSLPLKIKNAAYKAM-GTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 930
+ LP + + A + E+ DG + +G +S A GVP+ +I+
Sbjct: 736 YFELTELPNVLPHLANVHLDAVEHGDGIAF-MHAVQEGAASKSYGLAVAGLAGVPKPVIK 794
Query: 931 RA 932
A
Sbjct: 795 NA 796
Score = 107 (42.7 bits), Expect = 5.3e-24, Sum P(3) = 5.3e-24
Identities = 48/171 (28%), Positives = 71/171 (41%)
Query: 130 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYA--GLNPFGGLRPESIPKAGCPVVN 187
+ L+ K++ P +L R+GDFYE DA E L G E IP AG P
Sbjct: 21 QYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASAGEPIPMAGVPFHA 80
Query: 188 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPE 247
+ L L + G SV I E++ P ++ R + PG+ L + +D
Sbjct: 81 VEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTPGTVTDEAL--LSERVD--N 136
Query: 248 PMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKL-RTSRYHHLF 297
+ I GY + I T + L + TE+ + +L RTS LF
Sbjct: 137 LIAAIYHHNGRFGYATMDI--TSGRFQLSEPQTEEEMAAELQRTSPRELLF 185
Score = 58 (25.5 bits), Expect = 5.3e-24, Sum P(3) = 5.3e-24
Identities = 14/67 (20%), Positives = 36/67 (53%)
Query: 430 MSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWV 489
+ ++ S+ + L L E A ++E+CR V + +H+ G + ++E +M+ ++
Sbjct: 549 LQQLAASVAQLDVLQNLAE--RAENLEYCRPTLVQEAGIHIQGGR--HPVVERVMNEPFI 604
Query: 490 ATGLKID 496
A ++++
Sbjct: 605 ANPIELN 611
>UNIPROTKB|Q89VX1 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224911 "Bradyrhizobium japonicum USDA 110" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000040 GenomeReviews:BA000040_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:NP_767564.1
ProteinModelPortal:Q89VX1 GeneID:1049823 KEGG:bja:bll0924
PATRIC:21185344 BioCyc:BJAP224911:GJEJ-933-MONOMER Uniprot:Q89VX1
Length = 912
Score = 264 (98.0 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 93/306 (30%), Positives = 140/306 (45%)
Query: 640 GEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSS---ELQTKINILVFASMLLVIGK 696
G+ F+T ++ E + AG +A LE+ L + E+ + LL +
Sbjct: 536 GQIRFTTSELGEIEAKIANAGDRALGLELEIFERLCAKALEISDDLRAAAQGFALLDVAT 595
Query: 697 ALFA-HVSEGRRRKWVFPALK-DIELDG----ANCLKMNGLSPYWFDAAEGSAVHNTVDM 750
+L V E R V +L IE LK NG P+ +A + S
Sbjct: 596 SLAKLAVDENYVRPEVDSSLGFAIEAGRHPVVEQALKRNG-EPFIANACDLSPAPAQKSG 654
Query: 751 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 810
Q L+LLTGPN GKS+ LR +LL G VPA A I D + + + D A G
Sbjct: 655 Q-LWLLTGPNMAGKSTFLRQNALIALLAQIGSFVPATRARIGIIDRLFSRVGAADDLARG 713
Query: 811 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVS 869
+S+F VEM E +I+ R+LV++DEI RGT T G IA + IE L ++ C + +
Sbjct: 714 RSTFMVEMVETAAILNQAGERALVILDEIGRGTATFDGLSIAWAAIEHLHESNRCRTLFA 773
Query: 870 THLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 929
TH H + +L K+ + + G V +++ G S + AK G+P +I
Sbjct: 774 THYHELTALSAKLPRMFNATVRVKEWQGNVVFLHEVLPGSADRSYGIQVAKLAGLPPAVI 833
Query: 930 QRAEDL 935
RA+ +
Sbjct: 834 TRAKSV 839
Score = 99 (39.9 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 28/95 (29%), Positives = 44/95 (46%)
Query: 130 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 187
+ L+ K+ +L R+GDFYE DA I + G L G + IP G PV
Sbjct: 32 QYLEIKAAHQGLLLFYRMGDFYELFFEDAEIASKTLGIVLTKRGKHQGADIPMCGVPVER 91
Query: 188 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 222
L L G+ V + E+ + P A++R ++ +
Sbjct: 92 AEDYLHRLISAGHRVAVCEQTEDPAAAKARGNKSV 126
>TIGR_CMR|SPO_0011 [details] [associations]
symbol:SPO_0011 "DNA mismatch repair protein MutS"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_165284.1
ProteinModelPortal:Q5LWH0 PRIDE:Q5LWH0 GeneID:3194479
KEGG:sil:SPO0011 PATRIC:23373251 Uniprot:Q5LWH0
Length = 877
Score = 247 (92.0 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 82/302 (27%), Positives = 139/302 (46%)
Query: 644 FSTLKVEEALERYHEAGAKA---KAKVLELLRGLSSELQTKINILVFASMLLVIGKALFA 700
F+T+++ E R AG A + ++ L G E ++NI L + AL A
Sbjct: 511 FTTVELSELETRILNAGNHALEIEKRLYSSLSGAVLEQAARLNIAARGLAELDLATAL-A 569
Query: 701 HVSEGRRRKWVFPAL---KDIELDGA------NCLKMNGLSPYWFDAAEGSAVHNTVDMQ 751
++ R W P++ + ++G + L+ G P+ + + SA
Sbjct: 570 DLA--RAENWCRPSVDPSRAFAIEGGRHPVVEHALRRQGGDPFVANDCDLSADKGA---- 623
Query: 752 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 811
++ LLTGPN GKS+ LR +LL G VPA+SA I + + + D A G+
Sbjct: 624 AIRLLTGPNMAGKSTYLRQNALITLLAQIGSYVPADSAHIGVVSQLFSRVGASDDLARGR 683
Query: 812 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVST 870
S+F VEM E +I+ +LV++DEI RGT T G IA + +E L C + +T
Sbjct: 684 STFMVEMVETAAILNQADDHALVILDEIGRGTATYDGLSIAWATLEHLHATNRCRALFAT 743
Query: 871 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 930
H H + +L + + + +G+ + ++ G S + A+ G+P +++
Sbjct: 744 HYHELTALAATLDGVENLTVAVKEWEGEVIFLHEVRKGAADRSYGVQVAQLAGLPPSVVA 803
Query: 931 RA 932
RA
Sbjct: 804 RA 805
Score = 116 (45.9 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 30/95 (31%), Positives = 44/95 (46%)
Query: 130 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYA--GLNPFGGLRPESIPKAGCPVVN 187
+ L+ K + +L R+GDFYE DA E L G E IP G PV
Sbjct: 10 QYLEIKEAYADALLFYRMGDFYEMFFDDAVAAAEALDIALTKRGKHEGEDIPMCGVPVHA 69
Query: 188 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 222
L L R G+ V + E+++ P +A+ R S+ +
Sbjct: 70 AEGYLLTLIRKGFRVAVCEQMESPAEAKKRGSKSV 104
>UNIPROTKB|A9WFZ9 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:324602 "Chloroflexus aurantiacus J-10-fl" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:CP000909 GenomeReviews:CP000909_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:YP_001636542.1 ProteinModelPortal:A9WFZ9
STRING:A9WFZ9 GeneID:5827426 KEGG:cau:Caur_2954 PATRIC:21417221
ProtClustDB:CLSK2477234 BioCyc:CAUR324602:GIXU-3001-MONOMER
Uniprot:A9WFZ9
Length = 966
Score = 297 (109.6 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 88/300 (29%), Positives = 146/300 (48%)
Query: 649 VEEALERYHEAGAKAKAKVLELLRG----LSSELQTKINIL--VFASMLLVIGKALFAHV 702
V E L+ Y + A+ K+++L R L ELQ ++ L A++ + A A V
Sbjct: 596 VTEELKYYEGLLSDARLKLVDLERDIFQRLCDELQPHLDRLRATIAAVARIDALAALAEV 655
Query: 703 SEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQS----LFLLTG 758
+ R ++V P L+ D +K G P + N +D+ + ++TG
Sbjct: 656 AV--RGRYVQPRLRT---DRVLRIKQ-GRHPVVERTLSEPFIGNDIDLDGEQAQILIITG 709
Query: 759 PNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM 818
PN GKS+ LR + +L+ G VPA+ A I D I + + D A G+S+F VEM
Sbjct: 710 PNMAGKSTFLRQVALITLMAQIGSFVPADEAEIGLVDRIFTRIGAQDDIATGQSTFMVEM 769
Query: 819 SEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN---IGCLGIVSTHLHGI 875
+E +++ +T RSL+++DE+ RGT T G IA +++E + + +GC + +TH H +
Sbjct: 770 TETAALLMQSTPRSLIILDEVGRGTSTYDGMAIARAVVEYIHDHPRLGCRTLFATHYHEL 829
Query: 876 FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 935
+L ++ M DG+ V +L G S A+ G+P +I+RA L
Sbjct: 830 IALERELPRVRNYHMAAVERDGRVVFLHELRPGGADRSYGIHVAELAGIPPEVIRRASAL 889
Score = 72 (30.4 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 31/119 (26%), Positives = 48/119 (40%)
Query: 133 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLN------PFGGLRPES-----IPKA 181
+ K + +LL R GDFYE DA ++ E + P+ P A
Sbjct: 15 KLKEEAADAILLFRFGDFYETFDDDAKLIAELLDITLTRKEYAVDKRLPKDQQKLYAPMA 74
Query: 182 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGID 240
G P + + + +L GY V I E++ T+A +R P S Y GL ++
Sbjct: 75 GMPYHAVDRYVSELIARGYRVAIAEQLS-ETEAMRNDTR-------PRSVYAAGLTPVE 125
Score = 40 (19.1 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 536 FEDMESTWKGRVKRIHIEPEIAEVEMAA-EALSLAVTEDFLPIISRIKATTAPLGGPKGE 594
F D + + + + + P AEV + EAL L E P+ +R+ APL + E
Sbjct: 185 FTDARALMQLQAELARLSP--AEVLVPDDEALRLPNLE---PVQARLSQDLAPLTKEERE 239
Query: 595 ILYAREHEAVWFKG 608
L E A +G
Sbjct: 240 ALLPHERVARRLEG 253
>FB|FBgn0036486 [details] [associations]
symbol:Msh6 "Msh6" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006301 "postreplication
repair" evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 EMBL:AE014296 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:BT050543 RefSeq:NP_648755.1 UniGene:Dm.966
ProteinModelPortal:Q9VUM0 SMR:Q9VUM0 DIP:DIP-23712N
MINT:MINT-323400 STRING:Q9VUM0 PaxDb:Q9VUM0
EnsemblMetazoa:FBtr0075646 GeneID:39654 KEGG:dme:Dmel_CG7003
UCSC:CG7003-RA CTD:2956 FlyBase:FBgn0036486
GeneTree:ENSGT00550000075024 InParanoid:Q9VUM0 OrthoDB:EOG4PNVXR
PhylomeDB:Q9VUM0 GenomeRNAi:39654 NextBio:814711 Bgee:Q9VUM0
GermOnline:CG7003 Uniprot:Q9VUM0
Length = 1190
Score = 273 (101.2 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 71/197 (36%), Positives = 99/197 (50%)
Query: 747 TVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDS 806
T L LLTGPN GGKS+L+R + ++ G +PA S + D I + + D
Sbjct: 947 TASEAPLSLLTGPNMGGKSTLMREVGLLVIMAQIGAHIPAASCRLSLVDRIFTRLGAQDD 1006
Query: 807 PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG 866
G S+F VE++E I+ T SLVL+DE+ RGT T GT IA S++ L N+ C
Sbjct: 1007 ILAGHSTFLVELNETSLILKHATCHSLVLLDELGRGTATYDGTAIAASVVNFLANLKCRT 1066
Query: 867 IVSTHLHGIFSLPLKIKNAA--YKAMGTEYLDG-----QTVP-TWKLVDGICRESLAFET 918
+ STH H + K + A E D +TV +K G C +S F
Sbjct: 1067 LFSTHYHNLIDFFHNDKRITLGHMACMVENEDNADPTQETVTFLYKYTAGACPKSYGFNA 1126
Query: 919 AKREGVPETIIQRAEDL 935
AK G+P+ II+RA +L
Sbjct: 1127 AKLAGMPQGIIKRAYEL 1143
Score = 92 (37.4 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 49/213 (23%), Positives = 85/213 (39%)
Query: 14 PKLRSLSSVFLRSPLRNYSPFRPSTLLLTRRFGQAYCFKDRRSLRGITKSSKKVKGSNDN 73
PK S L + N + L T + + F+++ L+ + ++K+ +D
Sbjct: 150 PKKSRKKSKILNNNNNNEPSSKKVKLESTIQLAEGATFQEK--LKNLQSNAKQDASYDDI 207
Query: 74 ILSDKDLSH-IMWWQERLQMCRKPSTLHLVNRLK----YS-NLLGLDVNLKNGSLKEGTL 127
+ + +L ++W ++L+ + R Y + L + NG L G
Sbjct: 208 VTNTSNLDEPVVWPHQKLEFLQPDKIKDKEGRRPDHPDYDKSTLHVPEKFLNG-LSPGVR 266
Query: 128 NWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVN 187
W +L KS VL +VG FYE +DA + V G F +R E +G P ++
Sbjct: 267 QWWVL--KSDNYDCVLFFKVGKFYELYHMDADVGVNELG---FTYMRGE-FAHSGFPEIS 320
Query: 188 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSR 220
+ L G+ V VE+ + P R R
Sbjct: 321 FDKMSTILVDRGFKVARVEQTETPDMMTERCKR 353
>UNIPROTKB|P23909 [details] [associations]
symbol:mutS species:83333 "Escherichia coli K-12"
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0032300 "mismatch repair complex"
evidence=IGI] [GO:0032136 "adenine/cytosine mispair binding"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEP] [GO:0043531 "ADP binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0000018 "regulation of DNA recombination"
evidence=IMP] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000166
"nucleotide binding" evidence=IEA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003684
GO:GO:0043531 GO:GO:0008301 GO:GO:0006298 EMBL:U29579 GO:GO:0000018
GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
PDB:2OK2 PDBsum:2OK2 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032300 HOGENOM:HOG000221407 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD EMBL:M64730 EMBL:AF004287 EMBL:AF001987 EMBL:AF001988
EMBL:AF001989 EMBL:AF001990 EMBL:AF001991 EMBL:AF001992
EMBL:AF001993 EMBL:AF001994 EMBL:AF001995 EMBL:AF001996
EMBL:AF001997 EMBL:AF001998 EMBL:AF001999 EMBL:AF002000
EMBL:AF002001 EMBL:AF002002 EMBL:AF002003 EMBL:AF002004
EMBL:AF002005 EMBL:AF002006 EMBL:AF002007 EMBL:AF002008
EMBL:AF002009 EMBL:AF002010 PIR:I54964 RefSeq:NP_417213.1
RefSeq:YP_490942.1 PDB:1E3M PDB:1NG9 PDB:1OH5 PDB:1OH6 PDB:1OH7
PDB:1OH8 PDB:1W7A PDB:1WB9 PDB:1WBB PDB:1WBD PDB:2WTU PDB:3K0S
PDBsum:1E3M PDBsum:1NG9 PDBsum:1OH5 PDBsum:1OH6 PDBsum:1OH7
PDBsum:1OH8 PDBsum:1W7A PDBsum:1WB9 PDBsum:1WBB PDBsum:1WBD
PDBsum:2WTU PDBsum:3K0S ProteinModelPortal:P23909 SMR:P23909
DIP:DIP-10287N IntAct:P23909 MINT:MINT-1264156 SWISS-2DPAGE:P23909
PRIDE:P23909 EnsemblBacteria:EBESCT00000004425
EnsemblBacteria:EBESCT00000016508 GeneID:12932427 GeneID:947206
KEGG:ecj:Y75_p2671 KEGG:eco:b2733 PATRIC:32120868 EchoBASE:EB0620
EcoGene:EG10625 BioCyc:EcoCyc:EG10625-MONOMER
BioCyc:ECOL316407:JW2703-MONOMER BioCyc:MetaCyc:EG10625-MONOMER
EvolutionaryTrace:P23909 Genevestigator:P23909 GO:GO:0032136
Uniprot:P23909
Length = 853
Score = 256 (95.2 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 67/190 (35%), Positives = 98/190 (51%)
Query: 746 NTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 805
N + + ++TGPN GGKS+ +R +L+ G VPA+ I D I + + D
Sbjct: 602 NLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAAD 661
Query: 806 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGC 864
A G+S+F VEM+E +I+ T SLVL+DEI RGT T G +A + E L N I
Sbjct: 662 DLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKA 721
Query: 865 LGIVSTHLHGIFSLPLKIKNAAYKAMGT-EYLDGQTVPTWKLV-DGICRESLAFETAKRE 922
L + +TH + LP K++ A + E+ G T+ V DG +S A
Sbjct: 722 LTLFATHYFELTQLPEKMEGVANVHLDALEH--GDTIAFMHSVQDGAASKSYGLAVAALA 779
Query: 923 GVPETIIQRA 932
GVP+ +I+RA
Sbjct: 780 GVPKEVIKRA 789
Score = 105 (42.0 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 32/104 (30%), Positives = 48/104 (46%)
Query: 130 EMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVV 186
+ L+ K++ P +L R+GDFYE DA L++ + L G E IP AG P
Sbjct: 16 QYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDIS-LTKRGASAGEPIPMAGIPYH 74
Query: 187 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 230
+ L L G SV I E++ P ++ R + PG+
Sbjct: 75 AVENYLAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVTPGT 118
>RGD|2322311 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0008340 "determination of adult lifespan"
evidence=ISO] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISO] [GO:0030983 "mismatched
DNA binding" evidence=IEA;ISO] [GO:0032137 "guanine/thymine mispair
binding" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=ISO] [GO:0045190 "isotype switching" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] [GO:0097193 "intrinsic apoptotic signaling
pathway" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0043570 "maintenance of DNA repeat
elements" evidence=ISO] [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0032142 "single guanine insertion binding" evidence=ISO]
[GO:0032143 "single thymine insertion binding" evidence=ISO]
[GO:0032357 "oxidized purine DNA binding" evidence=ISO] [GO:0032405
"MutLalpha complex binding" evidence=ISO] [GO:0043531 "ADP binding"
evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 RGD:2322311 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0000287 GO:GO:0043531
GO:GO:0003682 GO:GO:0016887 GO:GO:0006298 GO:GO:0000790
GO:GO:0045190 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 EMBL:CH473947 GO:GO:0016446 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 OrthoDB:EOG4CG07F IPI:IPI00369351
RefSeq:XP_002726765.1 RefSeq:XP_002729643.2
Ensembl:ENSRNOT00000021923 GeneID:100360342 KEGG:rno:100360342
UCSC:RGD:2322311 Uniprot:D4A0U9
Length = 1361
Score = 258 (95.9 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 62/185 (33%), Positives = 99/185 (53%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
L+TGPN GGKS+L+R +++ G VPAE + D + + + D G+S+F
Sbjct: 1132 LVTGPNMGGKSTLIRQAGLLAVMAQMGCYVPAELCRLTPVDRVFTRLGASDRIMSGESTF 1191
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 873
VE+SE SI+ T+ SLVL+DE+ RGT T GT IA ++++ L + I C + STH H
Sbjct: 1192 FVELSETASILRHATAHSLVLVDELGRGTATFDGTAIASAVVKELAETIKCRTLFSTHYH 1251
Query: 874 GI---FSLPLKIKNAAYKAMGTEYLDGQTVPT----WKLVDGICRESLAFETAKREGVPE 926
+ +S + ++ M + + T +K + G C +S F A+ +PE
Sbjct: 1252 SLVEDYSKNVCVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPE 1311
Query: 927 TIIQR 931
+IQ+
Sbjct: 1312 EVIQK 1316
Score = 107 (42.7 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 47/148 (31%), Positives = 65/148 (43%)
Query: 84 MWWQERLQMCRKPSTLHLVNRLK-----Y-SNLLGLDVNLKNGSLKEGTLNWEMLQFKSK 137
+W+ E L+ KP NR + Y S+ L + + N S G W QFKS+
Sbjct: 366 IWYHETLEWL-KPEKRRDENRRRPDHPDYNSSTLYVPEDFLN-SCTPGMRRW--WQFKSQ 421
Query: 138 FPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTR 197
V+ +VG FYE +DA I V GL G S G P + + D L +
Sbjct: 422 NFDLVIFYKVGKFYELYHMDAVIGVSELGLIFMKGNWAHS----GFPEIAFGRFSDSLVQ 477
Query: 198 NGYSVCIVEEVQGPT--QARSRKSRFIS 223
GY V VE+ + P +AR RK +S
Sbjct: 478 KGYKVARVEQTETPEMMEARCRKMAHVS 505
Score = 60 (26.2 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 619 TPGEEQIKQLKPAVDSKGR---KVGEEWFSTLKVEEALERYHEAGAKAKAKVLEL 670
T G + LKP SK + K G + S ++ A++R EA +K KA+ LEL
Sbjct: 137 TRGWVSKRMLKPYTGSKSKEAQKGGHFYSSKSEILRAMQRADEALSKDKAQRLEL 191
>TIGR_CMR|CHY_1397 [details] [associations]
symbol:CHY_1397 "DNA mismatch repair protein HexA"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006298 GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
OMA:HYFELTV KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_360229.1 ProteinModelPortal:Q3ACA5
STRING:Q3ACA5 GeneID:3728668 KEGG:chy:CHY_1397 PATRIC:21275925
BioCyc:CHYD246194:GJCN-1396-MONOMER Uniprot:Q3ACA5
Length = 841
Score = 258 (95.9 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 68/187 (36%), Positives = 99/187 (52%)
Query: 752 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 811
SL L+TGPN GKS+ +R +L G VPAE A + D I+ + + D A G+
Sbjct: 594 SLLLITGPNMAGKSTYMRQAALIVILAQIGSFVPAEYARVGLVDKILTRIGATDDLAKGQ 653
Query: 812 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVST 870
S+F VEM E +I+ TSRSL+L+DE+ RGT T G IA +IIE + I + ST
Sbjct: 654 STFMVEMIECNNILRNATSRSLILLDEVGRGTSTYDGISIAEAIIEYIQKKIKARTLFST 713
Query: 871 HLHGIFSLPLKIKNAA-YKAMGTEYLDGQTVP-TWKLVDGICRESLAFETAKREGVPETI 928
H H + L +I + + E G+ V K+V G +S AK G+P +
Sbjct: 714 HYHELTGLEGEIPGVKNFTVLVQE--KGEEVKFLHKVVPGKTDKSYGIYVAKLAGLPREV 771
Query: 929 IQRAEDL 935
++RA ++
Sbjct: 772 VERAYEI 778
Score = 101 (40.6 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 30/104 (28%), Positives = 48/104 (46%)
Query: 130 EMLQFKSKFPREVLLCRVGDFYEAIGIDACIL---VEYAGLNPFGGLRPESIPKAGCPVV 186
+ L K ++ +L R+GDFYE DA I +E G + E +P G P
Sbjct: 9 QYLDIKKQYSDCLLFFRLGDFYELFFEDAVIASRELEIVLTGRDAG-QEERVPMCGVPYH 67
Query: 187 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 230
+ + + L GY V I E+V+ P +A+ R ++ PG+
Sbjct: 68 SAQGYIAKLLSRGYKVAICEQVEDPKKAKGLVKREVTKIYTPGT 111
>UNIPROTKB|Q5VR41 [details] [associations]
symbol:OJ1174_D05.15 "Os01g0180600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 EMBL:AP008207 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR015536 PANTHER:PTHR11361:SF31
HOGENOM:HOG000030287 ProtClustDB:CLSN2680110 EMBL:AP003047
EMBL:AP003118 RefSeq:NP_001042208.1 UniGene:Os.74356 STRING:Q5VR41
EnsemblPlants:LOC_Os01g08540.1 GeneID:4325353 KEGG:osa:4325353
OMA:KFYELYD Uniprot:Q5VR41
Length = 1224
Score = 275 (101.9 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 97/291 (33%), Positives = 143/291 (49%)
Query: 661 AKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIEL 720
A A +++LL G +SE IN L +L A A S G + P +I L
Sbjct: 873 ANTLAMLVDLLVGKASEWSLVINALSTIDVLRSF--AAMALSSFGTTCR---P---NILL 924
Query: 721 DG-ANCLKMNGL-SPYWFDAAEGSAVHNTVDM-QSL-------FLLTGPNGGGKSSLLRS 770
G A L+M GL PY F + V N + + Q+L LLTGPN GGKS+++R+
Sbjct: 925 KGKAPVLQMKGLWHPYAFAESVNGLVPNDLSLGQNLSGQNRFALLLTGPNMGGKSTIMRA 984
Query: 771 ICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 830
C A +L G VP +S + DAI + + D G+S+F VE +E SI+ T
Sbjct: 985 TCLAIVLAQLGCYVPCQSCELTLADAIFTRIGAMDRIMSGESTFLVECTETASILENATE 1044
Query: 831 RSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGI---F-SLP-LKIKN 884
SLVL+DE+ RGT T G IA ++ L + + C + +TH H + F S P + +++
Sbjct: 1045 DSLVLLDELGRGTSTFDGYAIAYAVFRHLVEAVRCRLLFATHYHPLTKEFASHPHVTLQH 1104
Query: 885 AAYKAMGTEYLDG---QTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 932
A DG + ++L G C ES + A G+P +I++RA
Sbjct: 1105 MACMLKPRNGGDGGEKELTFLYRLTSGACPESYGLQVATMAGLPRSIVERA 1155
Score = 88 (36.0 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 57/234 (24%), Positives = 92/234 (39%)
Query: 19 LSSVFLRSPLRNYSPFRPSTLLLTRRFGQAYCFKDRRSLRGITKSSKKVKGSNDNILSDK 78
L S F SPL+ +P + + +R + S +KKVK + + + +K
Sbjct: 295 LFSEFDPSPLKPETPVMRAVIPRLKRVQEDQRVTTNDSCSPFWGPNKKVKPAQCSPVENK 354
Query: 79 DLSHIMWWQERLQM-CRKPSTLHLVNRLKYSNLLGLDVNL---KNGSLKEGTLNWEMLQF 134
+ M R + PS + NR + ++ L L + K T +
Sbjct: 355 -VHDEMAESARSKFEWLNPSNIRDANRRRLADPLYDKTTLFIPPDALRKMSTSQKQYWNI 413
Query: 135 KSKFPREVLLCRVGDFYEAIGIDACI----LVEYAGLNPFGGLRPESIPKAGCPVVNLRQ 190
K K+ VL +VG FYE +DA I L ++ G R I ++G V
Sbjct: 414 KCKYMDVVLFFKVGKFYELYEVDAEIGQKELDWKMTISGVGKCRQVGISESGIDVA---- 469
Query: 191 TLDDLTRNGYSVCIVEEVQGPTQARSRKSR--FISGHAHPGSPYVFGLVGIDHD 242
++ L GY V +E+++ QA+SR S + H +P G I D
Sbjct: 470 -VEKLLARGYKVGRIEQMESADQAKSRGSNSVILRKLVHVSTPSTVGDSNIGAD 522
>UNIPROTKB|I3LHZ9 [details] [associations]
symbol:LOC100739477 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:FP476043
Ensembl:ENSSSCT00000028757 Uniprot:I3LHZ9
Length = 1334
Score = 273 (101.2 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 64/185 (34%), Positives = 101/185 (54%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
L+TGPN GGKS+L+R +++ G VPAE + D + + + D G+S+F
Sbjct: 1107 LVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTF 1166
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 873
VE+SE SI+T T+ SLVL+DE+ RGT T GT IA ++++ L +NI C + STH H
Sbjct: 1167 FVELSETASILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYH 1226
Query: 874 GI---FSLPLKIKNAAYKAMGTEYLDGQTVPT----WKLVDGICRESLAFETAKREGVPE 926
+ +S + ++ M + + T +K + G C +S F A+ +PE
Sbjct: 1227 SLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPE 1286
Query: 927 TIIQR 931
+IQ+
Sbjct: 1287 EVIQK 1291
Score = 95 (38.5 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 36/105 (34%), Positives = 46/105 (43%)
Query: 121 SLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPK 180
S G W Q KS+ V+ +VG FYE +DA I V GL G S
Sbjct: 380 SCTPGMRKW--WQIKSQNFDLVIFYKVGKFYELYHMDALIGVSELGLVFMKGNWAHS--- 434
Query: 181 AGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPT--QARSRKSRFIS 223
G P + + D L + GY V VE+ + P +AR RK IS
Sbjct: 435 -GFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHIS 478
Score = 54 (24.1 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 607 KGKKFRPTVW----ASTPGEEQIKQLKPAVDSKGRKV--GEEWFSTL-KVEEALERYHEA 659
KGK R V + T G + LKP SK ++ G ++S ++ A++R EA
Sbjct: 109 KGKSARVHVQFFDDSPTRGWVSRRLLKPYTGSKSKEAQKGGHFYSAKPEILRAMQRADEA 168
Query: 660 GAKAKAKVLEL 670
K K K LEL
Sbjct: 169 LNKDKIKRLEL 179
Score = 45 (20.9 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 6/25 (24%), Positives = 17/25 (68%)
Query: 458 CRIKNVLDEILHMYGNSELNEILEL 482
C+I+ +++E++ + + L ++L L
Sbjct: 844 CKIRGIMEEVIDDFKSKILKQVLTL 868
Score = 42 (19.8 bits), Expect = 5.5e-23, Sum P(3) = 5.5e-23
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 564 EALSLAVTEDFLPIISRIKATTAP 587
E LS+A E+++P+ S + + + P
Sbjct: 674 ELLSMANFEEYIPLDSDVVSASRP 697
>UNIPROTKB|Q3KKQ0 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:315277 "Chlamydia trachomatis A/HAR-13" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:CP000051 GenomeReviews:CP000051_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_328620.1
ProteinModelPortal:Q3KKQ0 STRING:Q3KKQ0 GeneID:3687872
KEGG:cta:CTA_0862 PATRIC:32023672
BioCyc:CTRA315277:GI4C-873-MONOMER Uniprot:Q3KKQ0
Length = 820
Score = 260 (96.6 bits), Expect = 4.8e-23, Sum P(3) = 4.8e-23
Identities = 71/226 (31%), Positives = 116/226 (51%)
Query: 720 LDGANCLKMN-GLSPYWFDAAE-GSAVHNTVDMQS----LFLLTGPNGGGKSSLLRSICA 773
+D ++ L + G+ P + G+ + N M S + LLTGPN GKS+ +R I
Sbjct: 574 VDHSDALSITKGMHPVALTLLDKGTFIPNDTVMHSAQTRMILLTGPNMAGKSTYIRQIAL 633
Query: 774 ASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSL 833
++ G +PA SA I D I + + D+ + G S+F VEM+E +I+ T RSL
Sbjct: 634 LVIMAQMGSFIPARSAHIGIVDKIFTRIGAGDNLSKGMSTFMVEMAETANILHNATDRSL 693
Query: 834 VLIDEICRGTETAKGTCIAGSIIETL---DNIGCLGIVSTHLHGIFSLPLKIKNAA-YKA 889
V++DEI RGT T G IA +++E L D + +TH + L + ++ + A
Sbjct: 694 VILDEIGRGTSTYDGLAIAQAVVEFLLFTDGKKAKTLFATHYKELTELEMHCQHVENFHA 753
Query: 890 MGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 935
M E GQ + +++V G ++S AK G P +++ RA+ +
Sbjct: 754 MVKEN-SGQPIFMYEIVKGHSKKSFGIHVAKLAGFPLSVVSRAQQI 798
Score = 96 (38.9 bits), Expect = 4.8e-23, Sum P(3) = 4.8e-23
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 142 VLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYS 201
+LL R+G+FYEA DA IL + + + +++P +G P L +D L G+
Sbjct: 23 LLLFRLGEFYEAFFDDALILAQNLDITL---TQRQNVPMSGIPATCLDGYVDRLVSRGFK 79
Query: 202 VCIVEEVQGPTQARSRKSRFISGHAHPGS 230
V I E+ ++ R I+ PG+
Sbjct: 80 VAIAEQADNTEGSKGLVPRTINRLITPGA 108
Score = 46 (21.3 bits), Expect = 4.8e-23, Sum P(3) = 4.8e-23
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 360 VTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNP 414
V+ ++E + L T Q+ ++ G+ L+ + N +G + Y++D LL P
Sbjct: 197 VSWAFEYQSATKKLYTCFQVSSLDGFGLQGLVPAI---NAAGALLSYIQDKLLLP 248
>GENEDB_PFALCIPARUM|PF14_0051 [details] [associations]
symbol:PF14_0051 "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 SMART:SM00534
InterPro:IPR000305 GO:GO:0005524 GO:GO:0006298 EMBL:AE014187
GO:GO:0030983 SUPFAM:SSF82771 Gene3D:3.40.1170.10 SUPFAM:SSF55271
RefSeq:XP_001348224.1 ProteinModelPortal:Q8IM40
EnsemblProtists:PF14_0051:mRNA GeneID:811633 KEGG:pfa:PF14_0051
EuPathDB:PlasmoDB:PF3D7_1405400 HOGENOM:HOG000281379
ProtClustDB:CLSZ2432862 Uniprot:Q8IM40
Length = 1515
Score = 156 (60.0 bits), Expect = 5.0e-23, Sum P(6) = 5.0e-23
Identities = 49/165 (29%), Positives = 81/165 (49%)
Query: 84 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKN-GSLKEGTLNWEMLQFKSKFPREV 142
++W ++L + + ++ + LK NLL D N KN G LK LN E K K+ +
Sbjct: 181 LYWIKKLDNLKNMNAINCIEYLKDDNLLYFD-NYKNKGLLK--FLNDE----KRKYNNCI 233
Query: 143 LLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVV--NLRQTLDDLTRNGY 200
+L RVGDFYE G+D+ L+E+ + + C + ++ + L+ LT N
Sbjct: 234 ILSRVGDFYETYGLDSIFLIEFLNIKKMNN-------RLSCGFIKSSINKALNILTNNNL 286
Query: 201 SVCIVEEVQGPTQARSRKSRFISGHAHPGSP-YVFGLVGIDHDLD 244
+VCI EE+ ++ K R++S P P Y+ + + D D
Sbjct: 287 NVCIYEEIN--EKSLKMKKRYLSQIVTPEFPIYLNNIQYYNKDED 329
Score = 133 (51.9 bits), Expect = 5.0e-23, Sum P(6) = 5.0e-23
Identities = 48/196 (24%), Positives = 86/196 (43%)
Query: 751 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASI--PYFDAIMLHMKSYDSPA 808
++ LLTG N GK++L +I + L G+ P + SI + + L +Y
Sbjct: 1049 KNFILLTGKNMSGKTTLSFTILSILFLSNLGMYAPCDENSIIGKFREFYSLKNVNYQEQI 1108
Query: 809 DGKSSFQVEMSEIRSIVTA-----------TTSRSL-VLIDEICRGTETAKGTCIAGSII 856
+ S F+ + I S++ T + + +++DE C T I ++
Sbjct: 1109 ENMSLFREQAYYINSVIEEIKENYSVDKRPTREKEIFIVLDEPCIATTPVDNAIIISAVS 1168
Query: 857 ETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTE--YLDGQTVP-TWKLVDGICRES 913
+ L N C GI+ TH + + + + +N +K + + YL Q KL DGIC+ S
Sbjct: 1169 DYLKNY-C-GIIITHNYDLLNKICQSENIVFKRISKDINYLKEQDNKIVGKLEDGICKNS 1226
Query: 914 LAFETAKREGVPETII 929
A ET + + ++
Sbjct: 1227 EALETCRYTNIDPHVL 1242
Score = 104 (41.7 bits), Expect = 5.0e-23, Sum P(6) = 5.0e-23
Identities = 28/109 (25%), Positives = 52/109 (47%)
Query: 623 EQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKI 682
EQI ++ K V + + T V+ ++ Y + K K K+ E++ ++ +L + +
Sbjct: 834 EQISDFFHPLNKKS-DVMKNLYVTQDVQNKIKTYLFSIYKKKKKINEIIHNINIQLSSSV 892
Query: 683 NILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGL 731
+IL F S L I +AL+ H ++ W P K + L N + N +
Sbjct: 893 HILSFVSNFLQIIQALYNHTINSLKKGWSLPICKHLHLSYEN-MSFNNI 940
Score = 59 (25.8 bits), Expect = 5.0e-23, Sum P(6) = 5.0e-23
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 269 TMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSR 311
++KT S+ D +T D L L+ + + +++H + NTS T +
Sbjct: 398 SLKTISIYDNITFDVLNVYLKNTNFLKVYIHQHI--NTSFTKK 438
Score = 58 (25.5 bits), Expect = 5.0e-23, Sum P(6) = 5.0e-23
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 928 IIQRAEDLYIACGVNCVMIAAREQPP-----PSIIGASCVYVMLRPDKKLYIGQTDDLDG 982
II++ E+ A + I E+ P SI+ C++ D YIG +D++
Sbjct: 1392 IIKKIEE---ASNKKVIKIGMNEEVPIYYKNKSIVYILCIFSKDENDPYFYIGISDNISE 1448
Query: 983 RIRAH 987
RI+ H
Sbjct: 1449 RIKCH 1453
Score = 41 (19.5 bits), Expect = 5.0e-23, Sum P(6) = 5.0e-23
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 344 KVKELYGLENEVTFRNVTVSY 364
K+ EL+ +EN F N S+
Sbjct: 438 KITELFKIENYYLFNNFKSSF 458
Score = 38 (18.4 bits), Expect = 1.6e-16, Sum P(6) = 1.6e-16
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 667 VLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIE 719
++ + L+ + K+NI+ F +L+ I K + ++ G K+ + + DI+
Sbjct: 697 LVSIFNVLNHQNSFKLNIIKFYELLMNIQKIMKDNLDLGLFSKFSYQS--DIQ 747
Score = 37 (18.1 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 455 IEFCRIKNVLDEILHMYGNSELNEILELL 483
IEF IK + + + + S +N+ L +L
Sbjct: 253 IEFLNIKKMNNRLSCGFIKSSINKALNIL 281
>UNIPROTKB|Q8IM40 [details] [associations]
symbol:PF14_0051 "DNA mismatch repair protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005575
"cellular_component" evidence=ND] [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 SMART:SM00534
InterPro:IPR000305 GO:GO:0005524 GO:GO:0006298 EMBL:AE014187
GO:GO:0030983 SUPFAM:SSF82771 Gene3D:3.40.1170.10 SUPFAM:SSF55271
RefSeq:XP_001348224.1 ProteinModelPortal:Q8IM40
EnsemblProtists:PF14_0051:mRNA GeneID:811633 KEGG:pfa:PF14_0051
EuPathDB:PlasmoDB:PF3D7_1405400 HOGENOM:HOG000281379
ProtClustDB:CLSZ2432862 Uniprot:Q8IM40
Length = 1515
Score = 156 (60.0 bits), Expect = 5.0e-23, Sum P(6) = 5.0e-23
Identities = 49/165 (29%), Positives = 81/165 (49%)
Query: 84 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKN-GSLKEGTLNWEMLQFKSKFPREV 142
++W ++L + + ++ + LK NLL D N KN G LK LN E K K+ +
Sbjct: 181 LYWIKKLDNLKNMNAINCIEYLKDDNLLYFD-NYKNKGLLK--FLNDE----KRKYNNCI 233
Query: 143 LLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVV--NLRQTLDDLTRNGY 200
+L RVGDFYE G+D+ L+E+ + + C + ++ + L+ LT N
Sbjct: 234 ILSRVGDFYETYGLDSIFLIEFLNIKKMNN-------RLSCGFIKSSINKALNILTNNNL 286
Query: 201 SVCIVEEVQGPTQARSRKSRFISGHAHPGSP-YVFGLVGIDHDLD 244
+VCI EE+ ++ K R++S P P Y+ + + D D
Sbjct: 287 NVCIYEEIN--EKSLKMKKRYLSQIVTPEFPIYLNNIQYYNKDED 329
Score = 133 (51.9 bits), Expect = 5.0e-23, Sum P(6) = 5.0e-23
Identities = 48/196 (24%), Positives = 86/196 (43%)
Query: 751 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASI--PYFDAIMLHMKSYDSPA 808
++ LLTG N GK++L +I + L G+ P + SI + + L +Y
Sbjct: 1049 KNFILLTGKNMSGKTTLSFTILSILFLSNLGMYAPCDENSIIGKFREFYSLKNVNYQEQI 1108
Query: 809 DGKSSFQVEMSEIRSIVTA-----------TTSRSL-VLIDEICRGTETAKGTCIAGSII 856
+ S F+ + I S++ T + + +++DE C T I ++
Sbjct: 1109 ENMSLFREQAYYINSVIEEIKENYSVDKRPTREKEIFIVLDEPCIATTPVDNAIIISAVS 1168
Query: 857 ETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTE--YLDGQTVP-TWKLVDGICRES 913
+ L N C GI+ TH + + + + +N +K + + YL Q KL DGIC+ S
Sbjct: 1169 DYLKNY-C-GIIITHNYDLLNKICQSENIVFKRISKDINYLKEQDNKIVGKLEDGICKNS 1226
Query: 914 LAFETAKREGVPETII 929
A ET + + ++
Sbjct: 1227 EALETCRYTNIDPHVL 1242
Score = 104 (41.7 bits), Expect = 5.0e-23, Sum P(6) = 5.0e-23
Identities = 28/109 (25%), Positives = 52/109 (47%)
Query: 623 EQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKI 682
EQI ++ K V + + T V+ ++ Y + K K K+ E++ ++ +L + +
Sbjct: 834 EQISDFFHPLNKKS-DVMKNLYVTQDVQNKIKTYLFSIYKKKKKINEIIHNINIQLSSSV 892
Query: 683 NILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGL 731
+IL F S L I +AL+ H ++ W P K + L N + N +
Sbjct: 893 HILSFVSNFLQIIQALYNHTINSLKKGWSLPICKHLHLSYEN-MSFNNI 940
Score = 59 (25.8 bits), Expect = 5.0e-23, Sum P(6) = 5.0e-23
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 269 TMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSR 311
++KT S+ D +T D L L+ + + +++H + NTS T +
Sbjct: 398 SLKTISIYDNITFDVLNVYLKNTNFLKVYIHQHI--NTSFTKK 438
Score = 58 (25.5 bits), Expect = 5.0e-23, Sum P(6) = 5.0e-23
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 928 IIQRAEDLYIACGVNCVMIAAREQPP-----PSIIGASCVYVMLRPDKKLYIGQTDDLDG 982
II++ E+ A + I E+ P SI+ C++ D YIG +D++
Sbjct: 1392 IIKKIEE---ASNKKVIKIGMNEEVPIYYKNKSIVYILCIFSKDENDPYFYIGISDNISE 1448
Query: 983 RIRAH 987
RI+ H
Sbjct: 1449 RIKCH 1453
Score = 41 (19.5 bits), Expect = 5.0e-23, Sum P(6) = 5.0e-23
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 344 KVKELYGLENEVTFRNVTVSY 364
K+ EL+ +EN F N S+
Sbjct: 438 KITELFKIENYYLFNNFKSSF 458
Score = 38 (18.4 bits), Expect = 1.6e-16, Sum P(6) = 1.6e-16
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 667 VLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIE 719
++ + L+ + K+NI+ F +L+ I K + ++ G K+ + + DI+
Sbjct: 697 LVSIFNVLNHQNSFKLNIIKFYELLMNIQKIMKDNLDLGLFSKFSYQS--DIQ 747
Score = 37 (18.1 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 455 IEFCRIKNVLDEILHMYGNSELNEILELL 483
IEF IK + + + + S +N+ L +L
Sbjct: 253 IEFLNIKKMNNRLSCGFIKSSINKALNIL 281
>UNIPROTKB|E1B9Q4 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0032405
"MutLalpha complex binding" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000400 "four-way junction DNA
binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0043531 GO:GO:0003682 GO:GO:0016887
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0045910 SMART:SM00293 GO:GO:0016446
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 CTD:2956 GeneTree:ENSGT00550000075024
EMBL:DAAA02030744 IPI:IPI00714742 RefSeq:NP_001179666.1
UniGene:Bt.98842 Ensembl:ENSBTAT00000001867 GeneID:540526
KEGG:bta:540526 NextBio:20878683 Uniprot:E1B9Q4
Length = 1360
Score = 274 (101.5 bits), Expect = 7.4e-23, Sum P(3) = 7.4e-23
Identities = 64/185 (34%), Positives = 101/185 (54%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
L+TGPN GGKS+L+R +++ G VPAE + D + + + D G+S+F
Sbjct: 1131 LVTGPNMGGKSTLMRQAGLLAIMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTF 1190
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 873
VE+SE SI+T T+ SLVL+DE+ RGT T GT IA ++++ L +NI C + STH H
Sbjct: 1191 FVELSETASILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYH 1250
Query: 874 GI---FSLPLKIKNAAYKAMGTEYLDGQTVPT----WKLVDGICRESLAFETAKREGVPE 926
+ +S + ++ M + + T +K + G C +S F A+ +PE
Sbjct: 1251 SLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPE 1310
Query: 927 TIIQR 931
+IQ+
Sbjct: 1311 EVIQK 1315
Score = 95 (38.5 bits), Expect = 7.4e-23, Sum P(3) = 7.4e-23
Identities = 36/105 (34%), Positives = 46/105 (43%)
Query: 121 SLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPK 180
S G W Q KS+ V+ +VG FYE +DA I V GL G S
Sbjct: 404 SCTPGMRKW--WQIKSQNFDLVIFYKVGKFYEMYHMDALIGVSELGLVFMKGNWAHS--- 458
Query: 181 AGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPT--QARSRKSRFIS 223
G P + + D L + GY V VE+ + P +AR RK IS
Sbjct: 459 -GFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHIS 502
Score = 48 (22.0 bits), Expect = 6.5e-19, Sum P(2) = 6.5e-19
Identities = 23/71 (32%), Positives = 33/71 (46%)
Query: 607 KGKKFRPTVW----ASTPGEEQIKQLKPAVDSKGRKV--GEEWFSTL-KVEEALERYHEA 659
KGK R V + T G + LKP S ++ G ++S ++ A++R EA
Sbjct: 122 KGKSARVHVQFFDDSPTRGWVSRRLLKPYTGSHSKEAQKGGHFYSAKPEILRAMQRADEA 181
Query: 660 GAKAKAKVLEL 670
K K K LEL
Sbjct: 182 LNKDKIKRLEL 192
Score = 40 (19.1 bits), Expect = 7.4e-23, Sum P(3) = 7.4e-23
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 564 EALSLAVTEDFLPIISRIKATTAP 587
E LS+A E+++P+ S + T P
Sbjct: 698 ELLSMANFEEYVPLDSDMVHATRP 721
Score = 40 (19.1 bits), Expect = 7.4e-23, Sum P(3) = 7.4e-23
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 458 CRIKNVLDEILHMYGNSELNEILEL 482
C+I +++E++ + + L ++L L
Sbjct: 868 CKIIGIMEEVIDDFKSKILKQVLTL 892
Score = 37 (18.1 bits), Expect = 9.0e-18, Sum P(2) = 9.0e-18
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 609 KKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEE 642
++ RP V S QIK+ + DS+ G +
Sbjct: 228 EEVRPKVQGSRRSSRQIKKRRVISDSESDVGGSD 261
>TIGR_CMR|DET_1219 [details] [associations]
symbol:DET_1219 "DNA mismatch repair protein MutS"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_181932.1 ProteinModelPortal:Q3Z767
STRING:Q3Z767 GeneID:3229472 KEGG:det:DET1219 PATRIC:21609473
OMA:HIHAKTL BioCyc:DETH243164:GJNF-1220-MONOMER Uniprot:Q3Z767
Length = 858
Score = 246 (91.7 bits), Expect = 7.5e-23, Sum P(2) = 7.5e-23
Identities = 92/300 (30%), Positives = 147/300 (49%)
Query: 653 LERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL--------FAHVS- 703
L+ Y AK ++LE+ GL ++ ++ F S LL AL FA V+
Sbjct: 503 LKEYENLILNAKERLLEMETGLYEQVLNQLG--GFYSALLSNAAALASLDVLSAFAEVAV 560
Query: 704 -EGRRRKWVFPALKDIELD-GANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNG 761
G R +F + + + G + + GL Y AA ++ + D Q + +LTGPN
Sbjct: 561 RNGYVRP-LFHSENSLVIHRGRHPMVEQGLG-YGSFAANDISL-SAEDCQ-IIILTGPNM 616
Query: 762 GGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEI 821
GKS+ L+ L+ G VPAE+A + D I + + + + G+S+F VEM E
Sbjct: 617 AGKSTYLKQTALIVLMAQIGSYVPAETAELCLTDRIFSRIGAREDLSAGQSTFMVEMVET 676
Query: 822 RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG---IVSTHLHGIFSL 878
SI+ TSRSL+++DEI RGT T G IA +++E + + L + +TH H + L
Sbjct: 677 ASILNTATSRSLLILDEIGRGTSTYDGLAIAQAVVEYIHSQPSLHAKTLFATHYHELVEL 736
Query: 879 PL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 935
++KN Y +E G+ V ++V G +S AK G+P +I+RA ++
Sbjct: 737 ANYLPRVKN--YNIAVSEDR-GEVVFLHRIVPGGVDKSYGIHVAKLAGLPGWVIKRAYEV 793
Score = 109 (43.4 bits), Expect = 7.5e-23, Sum P(2) = 7.5e-23
Identities = 33/109 (30%), Positives = 47/109 (43%)
Query: 127 LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGL----NPFG-GLRPESIPKA 181
L + L K +P ++ R+GDFYE DA I + G GL+ +P A
Sbjct: 7 LRKQYLDIKKNYPEAIVFFRLGDFYETFEEDARIAARELEIVLTSREMGKGLK---VPLA 63
Query: 182 GCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 230
G P L L L GY V I E+V P + + R ++ PG+
Sbjct: 64 GIPYHALDNYLSRLINRGYKVAICEQVTKPGETKGLVKRQVTRLVTPGT 112
>UNIPROTKB|F1PM27 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 Pfam:PF00855 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812
SMART:SM00293 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000004197 Uniprot:F1PM27
Length = 1263
Score = 273 (101.2 bits), Expect = 8.9e-23, Sum P(3) = 8.9e-23
Identities = 64/185 (34%), Positives = 101/185 (54%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
L+TGPN GGKS+L+R +++ G VPAE + D + + + D G+S+F
Sbjct: 1060 LVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTF 1119
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 873
VE+SE SI+T T+ SLVL+DE+ RGT T GT IA ++++ L +NI C + STH H
Sbjct: 1120 FVELSETASILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYH 1179
Query: 874 GI---FSLPLKIKNAAYKAMGTEYLDGQTVPT----WKLVDGICRESLAFETAKREGVPE 926
+ +S + ++ M + + T +K + G C +S F A+ +PE
Sbjct: 1180 SLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPE 1239
Query: 927 TIIQR 931
+IQ+
Sbjct: 1240 EVIQK 1244
Score = 89 (36.4 bits), Expect = 8.9e-23, Sum P(3) = 8.9e-23
Identities = 34/105 (32%), Positives = 45/105 (42%)
Query: 121 SLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPK 180
S G W Q KS+ ++ +VG FYE +DA V GL G S
Sbjct: 333 SCTPGMRKW--WQIKSQNFDLIIFYKVGKFYELYHMDALTGVNELGLVFMKGNWAHS--- 387
Query: 181 AGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPT--QARSRKSRFIS 223
G P + + D L + GY V VE+ + P +AR RK IS
Sbjct: 388 -GFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHIS 431
Score = 51 (23.0 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 607 KGKKFRPTVW----ASTPGEEQIKQLKPAVDSKGRKV--GEEWFSTL-KVEEALERYHEA 659
KGK R V + T G + LKP S+ ++V G ++S+ ++ A++R EA
Sbjct: 51 KGKSVRIHVQFFDDSPTRGWVSRRLLKPYTGSQSKEVQKGGHFYSSKPEILRAMQRADEA 110
Query: 660 GAKAKAKVLEL 670
K K + LEL
Sbjct: 111 LNKDKIERLEL 121
Score = 45 (20.9 bits), Expect = 8.9e-23, Sum P(3) = 8.9e-23
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 564 EALSLAVTEDFLPIISRIKATTAP 587
E LS+A E+++P+ S + + T P
Sbjct: 627 ELLSMANFEEYVPLDSDVVSATRP 650
Score = 43 (20.2 bits), Expect = 4.7e-18, Sum P(3) = 4.7e-18
Identities = 18/75 (24%), Positives = 32/75 (42%)
Query: 466 EILHMYGNSELNEILELLMDPTWVATGL-KIDF----ETLVEE----CRLASVRIGEMIS 516
E+ HM + +NE+ + M W +G +I F ++LV++ R+ EM+
Sbjct: 362 ELYHMDALTGVNELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMME 421
Query: 517 LDGESDQKICSYDNI 531
I YD +
Sbjct: 422 ARCRKMAHISKYDRV 436
Score = 38 (18.4 bits), Expect = 4.7e-22, Sum P(3) = 4.7e-22
Identities = 5/25 (20%), Positives = 16/25 (64%)
Query: 458 CRIKNVLDEILHMYGNSELNEILEL 482
C+I +++E++ + + L +++ L
Sbjct: 797 CKIIEIMEEVVDNFKSKILKQVITL 821
>UNIPROTKB|P61667 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000014 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00091 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 270 (100.1 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 91/301 (30%), Positives = 147/301 (48%)
Query: 653 LERYHEAGAKAKAKVLELLRGLSSELQTKI-----NILVFASMLLVIGK-ALFAHVSEGR 706
L+ Y E A+ +++EL L +++ ++ I A L + A A V+
Sbjct: 511 LKEYEEKVLGAEDRIVELEYALFQDIRQRVAAQGERIARTADRLATLDVLAALADVAHDH 570
Query: 707 RRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDMQS----LFLLTGPN 760
R +V P + + G + G P +A S V N V + + L ++TGPN
Sbjct: 571 R--YVRPTVDE----GDAIVVTGGRHPV-VEALNRSERFVANDVQLDNGENQLVIITGPN 623
Query: 761 GGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSE 820
GKS+ +R + L+ G VPA+ ASI D I + + D+ A G+S+F VEM E
Sbjct: 624 MAGKSTFMRQVALIVLMAQTGSFVPADEASIGVVDRIFTRVGASDNLARGQSTFMVEMME 683
Query: 821 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLG--IVSTHLHGIFS 877
+I+ T RSLV++DEI RGT T G IA ++ E L D C + +TH H +
Sbjct: 684 TAAILRNATPRSLVVLDEIGRGTSTFDGVSIAWAVAEYLHDTERCAAKTLFATHYHELTE 743
Query: 878 LPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 934
L + ++KN E+ D Q + K+V+G S + A+ G+P+ +I+RA++
Sbjct: 744 LAVTRNRVKNCNVAVK--EWND-QVIFLRKIVEGGASHSYGIQVARLAGLPQEVIERAKE 800
Query: 935 L 935
+
Sbjct: 801 I 801
Score = 83 (34.3 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 31/105 (29%), Positives = 44/105 (41%)
Query: 130 EMLQFKSKFPREVLLCRVGDFYEAIGIDAC----IL-VEYAGLNPFGGLRPESIPKAGCP 184
+ L+ K+ P +L R+GDFYE DA IL + N GG + IP G P
Sbjct: 10 QYLEIKADHPDAILFFRLGDFYEMFLDDAVKASRILDITLTSRNK-GGDGAD-IPLCGVP 67
Query: 185 VVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 229
+ + L G V I E+V+ P + R + PG
Sbjct: 68 FHSAAPYIAKLVEAGEKVAICEQVEDPKSVKGIVKREVVKVVTPG 112
>TIGR_CMR|GSU_1822 [details] [associations]
symbol:GSU_1822 "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000014 InterPro:IPR000432
InterPro:IPR005748 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00091 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 GO:GO:0004871
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 270 (100.1 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 91/301 (30%), Positives = 147/301 (48%)
Query: 653 LERYHEAGAKAKAKVLELLRGLSSELQTKI-----NILVFASMLLVIGK-ALFAHVSEGR 706
L+ Y E A+ +++EL L +++ ++ I A L + A A V+
Sbjct: 511 LKEYEEKVLGAEDRIVELEYALFQDIRQRVAAQGERIARTADRLATLDVLAALADVAHDH 570
Query: 707 RRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA--VHNTVDMQS----LFLLTGPN 760
R +V P + + G + G P +A S V N V + + L ++TGPN
Sbjct: 571 R--YVRPTVDE----GDAIVVTGGRHPV-VEALNRSERFVANDVQLDNGENQLVIITGPN 623
Query: 761 GGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSE 820
GKS+ +R + L+ G VPA+ ASI D I + + D+ A G+S+F VEM E
Sbjct: 624 MAGKSTFMRQVALIVLMAQTGSFVPADEASIGVVDRIFTRVGASDNLARGQSTFMVEMME 683
Query: 821 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLG--IVSTHLHGIFS 877
+I+ T RSLV++DEI RGT T G IA ++ E L D C + +TH H +
Sbjct: 684 TAAILRNATPRSLVVLDEIGRGTSTFDGVSIAWAVAEYLHDTERCAAKTLFATHYHELTE 743
Query: 878 LPL---KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 934
L + ++KN E+ D Q + K+V+G S + A+ G+P+ +I+RA++
Sbjct: 744 LAVTRNRVKNCNVAVK--EWND-QVIFLRKIVEGGASHSYGIQVARLAGLPQEVIERAKE 800
Query: 935 L 935
+
Sbjct: 801 I 801
Score = 83 (34.3 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 31/105 (29%), Positives = 44/105 (41%)
Query: 130 EMLQFKSKFPREVLLCRVGDFYEAIGIDAC----IL-VEYAGLNPFGGLRPESIPKAGCP 184
+ L+ K+ P +L R+GDFYE DA IL + N GG + IP G P
Sbjct: 10 QYLEIKADHPDAILFFRLGDFYEMFLDDAVKASRILDITLTSRNK-GGDGAD-IPLCGVP 67
Query: 185 VVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPG 229
+ + L G V I E+V+ P + R + PG
Sbjct: 68 FHSAAPYIAKLVEAGEKVAICEQVEDPKSVKGIVKREVVKVVTPG 112
>UNIPROTKB|Q23K54 [details] [associations]
symbol:TTHERM_00194810 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
EMBL:GG662673 ProtClustDB:CLSZ2445539 RefSeq:XP_001017234.1
UniGene:Tth.3690 ProteinModelPortal:Q23K54 EnsemblProtists:EAR96989
GeneID:7830572 KEGG:tet:TTHERM_00194810 Uniprot:Q23K54
Length = 1232
Score = 278 (102.9 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 94/317 (29%), Positives = 145/317 (45%)
Query: 638 KVGE-EWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSEL-------QTKINILVFAS 689
K G+ + F T ++ E + EA K ++ E R + E T INIL
Sbjct: 867 KAGKYQRFQTKELRELIAELDEAEDVQKKELKEFCRFIFKEFYESYKTWDTLINILAELD 926
Query: 690 MLLVIGKALFAHVSEGRRRKWVFPALKD----IELDGAN--CLKMNGLSPYWFDAAEGSA 743
L+ + + F R ++PA + IEL CL G++ D G
Sbjct: 927 CLISLSRVSFLLADGVMSRPELYPASEKYVPFIELTSGRHPCLASMGVNFIPNDIYLGD- 985
Query: 744 VHNT---VDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLH 800
+ T D ++L LLTGPN GGKS+ LR C ++L G VPA+S + D I
Sbjct: 986 IKQTGQFEDNKNLILLTGPNMGGKSTTLRMACVMAILAQIGCYVPAKSLRMTLVDRIFTR 1045
Query: 801 MKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL- 859
+ + D DGKS+F +EM E + V + SL+++DE+ RGT T G IA SI+ L
Sbjct: 1046 IGASDKLMDGKSTFFIEMEETSNAVKQGSKHSLIIMDELGRGTSTFDGVAIAYSIVRYLV 1105
Query: 860 DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLD---GQTVPTWKLVDGICRESLAF 916
+N+ + +TH H + AY M ++D + + ++L G C S
Sbjct: 1106 ENLQSRCLFATHYHVLLDEFRHYPQIAYYHMAC-HVDEKRSKVIFLYRLKAGECSSSFGI 1164
Query: 917 ETAKREGVPETIIQRAE 933
AK G+ + +I+ A+
Sbjct: 1165 NVAKVVGISDNLIEIAK 1181
Score = 78 (32.5 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 30/105 (28%), Positives = 45/105 (42%)
Query: 121 SLKEGT-LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIP 179
SLK+ T + + + KS ++L ++G FYE DA I + LN G P
Sbjct: 261 SLKQFTPVMRQYWEIKSTNFDKILFFKLGKFYELFYEDALITHKELDLNWMGKKMHTGFP 320
Query: 180 KAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISG 224
+ L + L GY V + E+ + P Q + R R SG
Sbjct: 321 EKA-----LDKMASKLISLGYKVAVAEQTETPEQMKQRLMREKSG 360
>TIGR_CMR|APH_0857 [details] [associations]
symbol:APH_0857 "DNA mismatch repair protein MutS"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
RefSeq:YP_505434.1 STRING:Q2GJL7 GeneID:3930413 KEGG:aph:APH_0857
PATRIC:20950410 HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
BioCyc:APHA212042:GHPM-871-MONOMER PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 Uniprot:Q2GJL7
Length = 820
Score = 252 (93.8 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 83/294 (28%), Positives = 135/294 (45%)
Query: 644 FSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVS 703
++T +++E ER A +++ ++ +GL S + + + A+ + L
Sbjct: 504 YTTAELKELEERIVSAQSESADLEAQIFKGLCSRIADECQDIGLAAEAVAELDVLTTLAE 563
Query: 704 EGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQ---SLFLLTGPN 760
+V P + D + + G P + A N D+ S+ L+TGPN
Sbjct: 564 VAVENNYVRPIVDDSK----QFKIVRGRHPVVEVGTDFIA--NDCDLSEGNSMSLITGPN 617
Query: 761 GGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSE 820
GKS+ LR ++L G VPAE A I D I + + D+ A G S+F VEM E
Sbjct: 618 MAGKSTFLRQNALIAVLAHIGSFVPAEHAHIGVIDKIFSRVGASDNIALGHSTFMVEMVE 677
Query: 821 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFSLP 879
+I+ TS+SLV++DEI RGT G IA + IE + ++ I +TH H + L
Sbjct: 678 TAAILNQATSKSLVILDEIGRGTAINDGLSIALAAIEHIHDVTKSRAICATHYHELPKLS 737
Query: 880 LKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 933
+N + + E G+ V +L+ GI S A G P+ ++RA+
Sbjct: 738 SHFENIRFFCLRIEEWKGEVVFLHELIPGISSRSYGIHVAGLAGFPKGALERAK 791
Score = 99 (39.9 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 27/86 (31%), Positives = 41/86 (47%)
Query: 135 KSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDD 194
K ++ +LL R+GDFYE DA I + LN R P G P + +
Sbjct: 18 KEQYGECLLLYRLGDFYELFFEDAVIASKT--LNIVLTKRGTDTPMCGVPYHSSESYIGR 75
Query: 195 LTRNGYSVCIVEEVQGPTQARSRKSR 220
L ++GY V + E+++ +AR R R
Sbjct: 76 LVKSGYKVAVCEQIETAEEARKRSVR 101
Score = 52 (23.4 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 147 VGDFYEAIGIDAC-ILVEYAGLNPFGGLRPESIPK 180
+GDF E + + AC L+EY + G L S PK
Sbjct: 227 LGDF-EEVEVSACGSLLEYVRMTQRGSLPKLSYPK 260
>TIGR_CMR|SO_3431 [details] [associations]
symbol:SO_3431 "DNA mismatch repair protein MutS"
species:211586 "Shewanella oneidensis MR-1" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_718984.1
ProteinModelPortal:Q8EBR9 SMR:Q8EBR9 GeneID:1171106
KEGG:son:SO_3431 PATRIC:23526550 Uniprot:Q8EBR9
Length = 856
Score = 255 (94.8 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 64/192 (33%), Positives = 101/192 (52%)
Query: 744 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 803
+HN + + ++TGPN GGKS+ +R + +L+ G VPAE A+I D I + +
Sbjct: 607 LHN---QRRMLIVTGPNMGGKSTYMRQVALITLMAHIGCFVPAERATIGPIDRIFTRIGA 663
Query: 804 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNI 862
D A G+S+F VEM+E +I+ T++SLVL+DEI RGT T G +A S E L +
Sbjct: 664 SDDLASGRSTFMVEMTETANILHNATAQSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQV 723
Query: 863 GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLV-DGICRESLAFETAKR 921
G + + +TH + LP ++ + Y T+ V +G +S + A
Sbjct: 724 GAMTLFATHYFELTQLP-ELMSGVYNVHLDAIEHEDTIAFMHAVQEGAASKSYGLQVAAL 782
Query: 922 EGVPETIIQRAE 933
GVP +I+ A+
Sbjct: 783 AGVPARVIKAAK 794
Score = 93 (37.8 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 31/103 (30%), Positives = 45/103 (43%)
Query: 130 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 187
+ L K++ +L R+GDFYE DA E G L G + IP AG P
Sbjct: 18 QYLSMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGDPIPMAGIPYHA 77
Query: 188 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 230
+ L L + G SV I E++ P ++ R + PG+
Sbjct: 78 VEGYLAKLVQIGQSVAICEQIGDPATSKGPVERKVVRIVTPGT 120
>UNIPROTKB|F5H2F9 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0003682
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 GO:GO:0045910
GO:GO:0016446 EMBL:AC006509 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 HGNC:HGNC:7329 IPI:IPI01013073
ProteinModelPortal:F5H2F9 SMR:F5H2F9 Ensembl:ENST00000538136
ArrayExpress:F5H2F9 Bgee:F5H2F9 Uniprot:F5H2F9
Length = 1058
Score = 261 (96.9 bits), Expect = 5.1e-22, Sum P(3) = 5.1e-22
Identities = 62/185 (33%), Positives = 99/185 (53%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
L+TGPN GGKS+L+R +++ G VPAE + D + + + D G+S+F
Sbjct: 829 LVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTF 888
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 873
VE+SE SI+ T+ SLVL+DE+ RGT T GT IA ++++ L + I C + STH H
Sbjct: 889 FVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH 948
Query: 874 GI---FSLPLKIKNAAYKAMGTEYLDGQTVPT----WKLVDGICRESLAFETAKREGVPE 926
+ +S + ++ M + + T +K + G C +S F A+ +PE
Sbjct: 949 SLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPE 1008
Query: 927 TIIQR 931
+IQ+
Sbjct: 1009 EVIQK 1013
Score = 95 (38.5 bits), Expect = 5.1e-22, Sum P(3) = 5.1e-22
Identities = 36/106 (33%), Positives = 49/106 (46%)
Query: 121 SLKEGTLNWEMLQFKSKFPREVLLC-RVGDFYEAIGIDACILVEYAGLNPFGGLRPESIP 179
S G W Q KS+ ++++C +VG FYE +DA I V GL G S
Sbjct: 103 SCTPGMRKW--WQIKSQ-NFDLVICYKVGKFYELYHMDALIGVSELGLVFMKGNWAHS-- 157
Query: 180 KAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPT--QARSRKSRFIS 223
G P + + D L + GY V VE+ + P +AR RK IS
Sbjct: 158 --GFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHIS 201
Score = 41 (19.5 bits), Expect = 5.1e-22, Sum P(3) = 5.1e-22
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 564 EALSLAVTEDFLPIISRIKATT 585
E LS+A E+++P+ S +TT
Sbjct: 397 ELLSMANFEEYIPLDSDTVSTT 418
>UNIPROTKB|J9P5H1 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533 SMART:SM00534
Pfam:PF00855 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000043509 Uniprot:J9P5H1
Length = 1279
Score = 266 (98.7 bits), Expect = 5.3e-22, Sum P(3) = 5.3e-22
Identities = 64/186 (34%), Positives = 101/186 (54%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
L+TGPN GGKS+L+R +++ G VPAE + D + + + D G+S+F
Sbjct: 1050 LVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTF 1109
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEIC-RGTETAKGTCIAGSIIETL-DNIGCLGIVSTHL 872
VE+SE SI+T T+ SLVL+DE+ RGT T GT IA ++++ L +NI C + STH
Sbjct: 1110 FVELSETASILTHATAHSLVLVDELVGRGTATFDGTAIANAVVKELAENIKCRTLFSTHY 1169
Query: 873 HGI---FSLPLKIKNAAYKAMGTEYLDGQTVPT----WKLVDGICRESLAFETAKREGVP 925
H + +S + ++ M + + T +K + G C +S F A+ +P
Sbjct: 1170 HSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLP 1229
Query: 926 ETIIQR 931
E +IQ+
Sbjct: 1230 EEVIQK 1235
Score = 89 (36.4 bits), Expect = 5.3e-22, Sum P(3) = 5.3e-22
Identities = 34/105 (32%), Positives = 45/105 (42%)
Query: 121 SLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPK 180
S G W Q KS+ ++ +VG FYE +DA V GL G S
Sbjct: 323 SCTPGMRKW--WQIKSQNFDLIIFYKVGKFYELYHMDALTGVNELGLVFMKGNWAHS--- 377
Query: 181 AGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPT--QARSRKSRFIS 223
G P + + D L + GY V VE+ + P +AR RK IS
Sbjct: 378 -GFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHIS 421
Score = 51 (23.0 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 607 KGKKFRPTVW----ASTPGEEQIKQLKPAVDSKGRKV--GEEWFSTL-KVEEALERYHEA 659
KGK R V + T G + LKP S+ ++V G ++S+ ++ A++R EA
Sbjct: 41 KGKSVRIHVQFFDDSPTRGWVSRRLLKPYTGSQSKEVQKGGHFYSSKPEILRAMQRADEA 100
Query: 660 GAKAKAKVLEL 670
K K + LEL
Sbjct: 101 LNKDKIERLEL 111
Score = 45 (20.9 bits), Expect = 5.3e-22, Sum P(3) = 5.3e-22
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 564 EALSLAVTEDFLPIISRIKATTAP 587
E LS+A E+++P+ S + + T P
Sbjct: 617 ELLSMANFEEYVPLDSDVVSATRP 640
Score = 43 (20.2 bits), Expect = 2.8e-17, Sum P(3) = 2.8e-17
Identities = 18/75 (24%), Positives = 32/75 (42%)
Query: 466 EILHMYGNSELNEILELLMDPTWVATGL-KIDF----ETLVEE----CRLASVRIGEMIS 516
E+ HM + +NE+ + M W +G +I F ++LV++ R+ EM+
Sbjct: 352 ELYHMDALTGVNELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMME 411
Query: 517 LDGESDQKICSYDNI 531
I YD +
Sbjct: 412 ARCRKMAHISKYDRV 426
Score = 38 (18.4 bits), Expect = 2.8e-21, Sum P(3) = 2.8e-21
Identities = 5/25 (20%), Positives = 16/25 (64%)
Query: 458 CRIKNVLDEILHMYGNSELNEILEL 482
C+I +++E++ + + L +++ L
Sbjct: 787 CKIIEIMEEVVDNFKSKILKQVITL 811
>UNIPROTKB|B4DF41 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
EMBL:AC006509 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 UniGene:Hs.445052 HGNC:HGNC:7329
HOVERGEN:HBG000101 EMBL:AK293921 IPI:IPI01014931 SMR:B4DF41
STRING:B4DF41 Ensembl:ENST00000540021 Uniprot:B4DF41
Length = 1230
Score = 261 (96.9 bits), Expect = 9.7e-22, Sum P(3) = 9.7e-22
Identities = 62/185 (33%), Positives = 99/185 (53%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
L+TGPN GGKS+L+R +++ G VPAE + D + + + D G+S+F
Sbjct: 1001 LVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTF 1060
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 873
VE+SE SI+ T+ SLVL+DE+ RGT T GT IA ++++ L + I C + STH H
Sbjct: 1061 FVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH 1120
Query: 874 GI---FSLPLKIKNAAYKAMGTEYLDGQTVPT----WKLVDGICRESLAFETAKREGVPE 926
+ +S + ++ M + + T +K + G C +S F A+ +PE
Sbjct: 1121 SLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPE 1180
Query: 927 TIIQR 931
+IQ+
Sbjct: 1181 EVIQK 1185
Score = 95 (38.5 bits), Expect = 9.7e-22, Sum P(3) = 9.7e-22
Identities = 36/106 (33%), Positives = 49/106 (46%)
Query: 121 SLKEGTLNWEMLQFKSKFPREVLLC-RVGDFYEAIGIDACILVEYAGLNPFGGLRPESIP 179
S G W Q KS+ ++++C +VG FYE +DA I V GL G S
Sbjct: 275 SCTPGMRKW--WQIKSQ-NFDLVICYKVGKFYELYHMDALIGVSELGLVFMKGNWAHS-- 329
Query: 180 KAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPT--QARSRKSRFIS 223
G P + + D L + GY V VE+ + P +AR RK IS
Sbjct: 330 --GFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHIS 373
Score = 41 (19.5 bits), Expect = 9.7e-22, Sum P(3) = 9.7e-22
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 564 EALSLAVTEDFLPIISRIKATT 585
E LS+A E+++P+ S +TT
Sbjct: 569 ELLSMANFEEYIPLDSDTVSTT 590
Score = 40 (19.1 bits), Expect = 4.3e-16, Sum P(3) = 4.3e-16
Identities = 21/63 (33%), Positives = 26/63 (41%)
Query: 165 AGLNPFGGLRPESIPKAGCPVVNLRQTLD-----DLTRNGYSVCIVEEVQGPTQARSRKS 219
AG P R S PKA LR+++ D + + EEVQ TQ R S
Sbjct: 53 AGPGPRPLARSASPPKAKNLNGGLRRSVGTTYVTDKSEEDNEIESEEEVQPKTQGSRRSS 112
Query: 220 RFI 222
R I
Sbjct: 113 RQI 115
>UNIPROTKB|P52701 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=ISS;IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISS;IBA] [GO:0009411 "response to
UV" evidence=ISS;IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=ISS;IBA] [GO:0045190 "isotype
switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0032405 "MutLalpha complex binding" evidence=IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IDA;IMP] [GO:0032301
"MutSalpha complex" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032142 "single guanine insertion
binding" evidence=IDA] [GO:0032143 "single thymine insertion
binding" evidence=IDA] [GO:0032357 "oxidized purine DNA binding"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=ISS] [GO:0008340
"determination of adult lifespan" evidence=ISS] [GO:0016447
"somatic recombination of immunoglobulin gene segments"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0045910
"negative regulation of DNA recombination" evidence=IDA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0003684 GO:GO:0003682 GO:GO:0000790 GO:GO:0045190 MIM:276300
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0045910 Orphanet:144 SMART:SM00293 MIM:608089 GO:GO:0008094
GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0051096 PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F
PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E PDBsum:2O8F
HOGENOM:HOG000243127 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
CTD:2956 EMBL:U73737 EMBL:U73732 EMBL:U73733 EMBL:U73734
EMBL:U73736 EMBL:D89645 EMBL:D89646 EMBL:AY082894 EMBL:BC004246
EMBL:U54777 EMBL:U28946 IPI:IPI00106847 IPI:IPI00384456 PIR:JC5839
RefSeq:NP_000170.1 UniGene:Hs.445052 PDB:2GFU PDBsum:2GFU
ProteinModelPortal:P52701 SMR:P52701 DIP:DIP-32972N IntAct:P52701
MINT:MINT-131993 STRING:P52701 PhosphoSite:P52701 DMDM:68067672
PaxDb:P52701 PeptideAtlas:P52701 PRIDE:P52701 DNASU:2956
Ensembl:ENST00000234420 GeneID:2956 KEGG:hsa:2956 UCSC:uc002rwc.2
UCSC:uc002rwd.4 GeneCards:GC02P048010 HGNC:HGNC:7329 HPA:CAB009091
HPA:HPA028376 HPA:HPA028446 MIM:600678 MIM:614350
neXtProt:NX_P52701 PharmGKB:PA184 HOVERGEN:HBG000101
InParanoid:P52701 OrthoDB:EOG4CG07F PhylomeDB:P52701
EvolutionaryTrace:P52701 GenomeRNAi:2956 NextBio:11716
PMAP-CutDB:P52701 ArrayExpress:P52701 Bgee:P52701 CleanEx:HS_MSH6
Genevestigator:P52701 GermOnline:ENSG00000116062 Uniprot:P52701
Length = 1360
Score = 261 (96.9 bits), Expect = 1.5e-21, Sum P(3) = 1.5e-21
Identities = 62/185 (33%), Positives = 99/185 (53%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
L+TGPN GGKS+L+R +++ G VPAE + D + + + D G+S+F
Sbjct: 1131 LVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTF 1190
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 873
VE+SE SI+ T+ SLVL+DE+ RGT T GT IA ++++ L + I C + STH H
Sbjct: 1191 FVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH 1250
Query: 874 GI---FSLPLKIKNAAYKAMGTEYLDGQTVPT----WKLVDGICRESLAFETAKREGVPE 926
+ +S + ++ M + + T +K + G C +S F A+ +PE
Sbjct: 1251 SLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPE 1310
Query: 927 TIIQR 931
+IQ+
Sbjct: 1311 EVIQK 1315
Score = 95 (38.5 bits), Expect = 1.5e-21, Sum P(3) = 1.5e-21
Identities = 36/106 (33%), Positives = 49/106 (46%)
Query: 121 SLKEGTLNWEMLQFKSKFPREVLLC-RVGDFYEAIGIDACILVEYAGLNPFGGLRPESIP 179
S G W Q KS+ ++++C +VG FYE +DA I V GL G S
Sbjct: 405 SCTPGMRKW--WQIKSQ-NFDLVICYKVGKFYELYHMDALIGVSELGLVFMKGNWAHS-- 459
Query: 180 KAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPT--QARSRKSRFIS 223
G P + + D L + GY V VE+ + P +AR RK IS
Sbjct: 460 --GFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHIS 503
Score = 55 (24.4 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 607 KGKKFRPTVW----ASTPGEEQIKQLKPAVDSKGRKV--GEEWFSTL-KVEEALERYHEA 659
KGK R V + T G + LKP SK ++ G ++S ++ A++R EA
Sbjct: 123 KGKSVRVHVQFFDDSPTRGWVSKRLLKPYTGSKSKEAQKGGHFYSAKPEILRAMQRADEA 182
Query: 660 GAKAKAKVLEL 670
K K K LEL
Sbjct: 183 LNKDKIKRLEL 193
Score = 41 (19.5 bits), Expect = 1.5e-21, Sum P(3) = 1.5e-21
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 564 EALSLAVTEDFLPIISRIKATT 585
E LS+A E+++P+ S +TT
Sbjct: 699 ELLSMANFEEYIPLDSDTVSTT 720
Score = 39 (18.8 bits), Expect = 8.0e-16, Sum P(3) = 8.0e-16
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 206 EEVQGPTQARSRKSRFI 222
EEVQ TQ R SR I
Sbjct: 229 EEVQPKTQGSRRSSRQI 245
>UNIPROTKB|B1N4L6 [details] [associations]
symbol:EHI_123830 "DNA mismatch repair protein Msh2,
putative" species:5759 "Entamoeba histolytica" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 EMBL:DS571433 RefSeq:XP_001914132.1
ProteinModelPortal:B1N4L6 STRING:B1N4L6 GeneID:6220147
KEGG:ehi:EHI_123830 EuPathDB:AmoebaDB:EHI_123830 InParanoid:B1N4L6
ProtClustDB:CLSZ2734733 Uniprot:B1N4L6
Length = 630
Score = 286 (105.7 bits), Expect = 1.7e-21, P = 1.7e-21
Identities = 123/499 (24%), Positives = 226/499 (45%)
Query: 459 RIKNVLDEILHMYGNSEL-----NEILELLMDPTWVATGL-KIDFETLVEECRLASVRIG 512
+I L+ + Y NS + NE L ++ D + G+ K D E++V+ +VRI
Sbjct: 60 KINKRLELVEGFYDNSGIRLKIKNEELAIIPDLEKLIKGINKSDLESIVK--LYEAVRIS 117
Query: 513 EMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTE 572
+ I + + K + +I E E +E + K + + ++E + + E
Sbjct: 118 KNI----KEELKEMNNKSIEKEIIEPLEKITEEMEKFEEMVVTLIDIEETQNHV-FKIRE 172
Query: 573 DFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPT-------VWASTPGEEQI 625
DF + +I+ + + + L ++ + K K + + S E+++
Sbjct: 173 DFDEGLQKIRESHKKVEELFEKCLEQAAND-LNIKTDKIKIVEHNNNLILRVSKSNEKEV 231
Query: 626 KQLKP--AVDS-KGR-KVGEEWFSTLKVE-EALE-RYHEAGAKAKAKVLELLRGLSSELQ 679
K+ K + + KG K + TL V+ + L+ + E K ++ +++ G + Q
Sbjct: 232 KKNKKYTIIQTLKGECKFTFKEMQTLNVKRDKLKLKEEEINKKFIEEINKVVEGYKEKFQ 291
Query: 680 TKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAA 739
N++ + + FA VS + + P + + E +K P + +
Sbjct: 292 ELENMIGYIDCI-----QSFATVSIDNNQGYSKPTIYESEKGIIKIIKAR--HPLIENNS 344
Query: 740 EGSAVHNTVDM---QSLF-LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 795
S + N +D+ ++ F ++TGPN GGKS+ LR I ++ G+ +P A I D
Sbjct: 345 INSFIENDIDIDRKETRFQIITGPNMGGKSTYLRMIGLCVIMAQIGMFIPCSEAHISICD 404
Query: 796 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 855
IM + + D+ +G S+F EM + I+ +T SLVLIDE+ RGT T G IA +I
Sbjct: 405 KIMCRIGAGDNIVEGMSTFMSEMKDTSEIIKKSTKNSLVLIDELGRGTSTYDGFGIAWAI 464
Query: 856 IETLD-NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESL 914
E L +IGC + +TH H I L ++ K + + +D Q V +K+ +G +SL
Sbjct: 465 SEYLAIDIGCYCVFATHFHEITGLEKRVTGVINKHVEADIIDKQLVLKYKINNGSTDQSL 524
Query: 915 AFETAKREGVPETIIQRAE 933
A A+ P +++ A+
Sbjct: 525 AIYVAEWADFPHEVVESAK 543
>ZFIN|ZDB-GENE-020905-3 [details] [associations]
symbol:msh6 "mutS homolog 6 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0045190 "isotype switching" evidence=IBA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 ZFIN:ZDB-GENE-020905-3 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0045190
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 GO:GO:0016446
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 HSSP:P23909 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
HOVERGEN:HBG000101 EMBL:AF412834 IPI:IPI00513357 UniGene:Dr.4108
ProteinModelPortal:Q90XA6 SMR:Q90XA6 STRING:Q90XA6
InParanoid:Q90XA6 ArrayExpress:Q90XA6 Uniprot:Q90XA6
Length = 1369
Score = 255 (94.8 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 63/184 (34%), Positives = 97/184 (52%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
L+TGPN GGKS+L+R +L G VPAES + D + + + D G+S+F
Sbjct: 1140 LVTGPNMGGKSTLMRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTF 1199
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 873
VE+SE SI+ T+ SLVL+DE+ RGT T GT IA ++++ L + I C + STH H
Sbjct: 1200 FVELSETASILLHATNHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTHYH 1259
Query: 874 GIFSLPLK---IKNAAYKAMGTEYLDGQTVPT----WKLVDGICRESLAFETAKREGVPE 926
+ ++ ++ M + + T +K + G C +S F A+ +PE
Sbjct: 1260 SLVEDHVQDPAVRLGHMACMVENECEDPSQETITFLYKFIRGACPKSYGFNAARLANIPE 1319
Query: 927 TIIQ 930
+IQ
Sbjct: 1320 DVIQ 1323
Score = 91 (37.1 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 32/96 (33%), Positives = 42/96 (43%)
Query: 125 GTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCP 184
G W Q KS+ VL +VG FYE +DA I V L G S G P
Sbjct: 408 GMRRW--WQLKSEMFDTVLFYKVGKFYELYHMDAVIGVNELNLTFMKGTWAHS----GFP 461
Query: 185 VVNLRQTLDDLTRNGYSVCIVEEVQGPT--QARSRK 218
+ + D L + GY V VE+ + P +AR +K
Sbjct: 462 EIGFGRFSDVLVQKGYKVARVEQTETPDMMEARCKK 497
Score = 40 (19.1 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 466 EILHMYGNSELNEILELLMDPTWVATGL-KIDF 497
E+ HM +NE+ M TW +G +I F
Sbjct: 433 ELYHMDAVIGVNELNLTFMKGTWAHSGFPEIGF 465
>TIGR_CMR|CBU_1056 [details] [associations]
symbol:CBU_1056 "DNA mismatch repair protein MutS"
species:227377 "Coxiella burnetii RSA 493" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_820057.2
ProteinModelPortal:Q83CQ2 SMR:Q83CQ2 PRIDE:Q83CQ2 GeneID:1208957
KEGG:cbu:CBU_1056 PATRIC:17930837
BioCyc:CBUR227377:GJ7S-1048-MONOMER Uniprot:Q83CQ2
Length = 859
Score = 228 (85.3 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 59/188 (31%), Positives = 98/188 (52%)
Query: 749 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 808
+ + + ++TGPN GGKS+ +R +LL G VPA++A + D I + + D A
Sbjct: 613 EKRRMLIITGPNMGGKSTYMRQTALITLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLA 672
Query: 809 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 867
G+S+F VEM+E +I+ T SLVL+DE+ RGT T G +A + L + +
Sbjct: 673 SGRSTFMVEMTETAAILHNATEESLVLMDEVGRGTSTFDGLSLAYACASYLATKLKAFAL 732
Query: 868 VSTH---LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 924
+TH L + S +KN A+ E+ + + + L +G +S + A+ G+
Sbjct: 733 FATHYFELTALASTLQAVKNVHLDAV--EH-EEKIIFLHALREGPANKSYGLQVAQLAGI 789
Query: 925 PETIIQRA 932
P ++IQ A
Sbjct: 790 PRSVIQHA 797
Score = 113 (44.8 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 43/171 (25%), Positives = 76/171 (44%)
Query: 130 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAG--LNPFGGLRPESIPKAGCPVVN 187
+ L+ K+++P ++ R+GDFYE DA + L G +IP AG P
Sbjct: 23 QYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAGHAIPMAGVPYHA 82
Query: 188 LRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPE 247
+ L L R G SV I E++ P ++ +R ++ PG+ L +D D
Sbjct: 83 VENYLTKLVRLGESVVICEQIGDPATSKGPVAREVTRIITPGTVSDEAL--LDEHRD--N 138
Query: 248 PMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFL 298
+ VI + G + I T + +++ ++E+AL ++ R L +
Sbjct: 139 TLMVIHQEKDRFGIATLDI--TSGRFLIQEIISENALFAEIERIRPAELLI 187
>UNIPROTKB|E1BYJ2 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00822608
Ensembl:ENSGALT00000039625 ArrayExpress:E1BYJ2 Uniprot:E1BYJ2
Length = 1341
Score = 275 (101.9 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 92/330 (27%), Positives = 153/330 (46%)
Query: 626 KQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGL-------SSEL 678
+ L + K + G + + T ++E+ L A + A + + +R L S +
Sbjct: 969 RNLPEEYELKSTRKGYKRYWTKEIEKMLAELINAEERRDAALKDCMRRLFYNFDKNSQDW 1028
Query: 679 QTKINILVFASMLLVIGKALFAHVSEGR--RRKWVFP---ALKDIELDGAN--CLKMNGL 731
QT + + +L+ + A ++ +G R + P A +EL A C+
Sbjct: 1029 QTAVQCIAVLDVLMSL--ANYSQDGDGPLCRPVILLPVDSAPPFLELKNARHPCITKTFF 1086
Query: 732 SPYWF--DAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESA 789
+ D GS + S L+TGPN GGKS+L+R ++ G VPAE
Sbjct: 1087 GDDFIPNDIVIGSKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVC 1146
Query: 790 SIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGT 849
+ D + + + D G+S+F VE+SE SI+ T SLVL+DE+ RGT T GT
Sbjct: 1147 RLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGT 1206
Query: 850 CIAGSIIETL-DNIGCLGIVSTHLHGIF-----SLPLKIKNAAYKAMG-TEYLDGQTVP- 901
IA +++ L +NI C + STH H + S +++ + A +E +T+
Sbjct: 1207 AIASAVVRELAENIKCRTLFSTHYHSLVEDYSGSAAVRLGHMACMVENESEDPSQETITF 1266
Query: 902 TWKLVDGICRESLAFETAKREGVPETIIQR 931
+K ++G C +S F A+ +PE IIQ+
Sbjct: 1267 LYKFIEGACPKSYGFNAARLADIPEEIIQK 1296
Score = 69 (29.3 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 27/93 (29%), Positives = 38/93 (40%)
Query: 125 GTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCP 184
G W Q KS+ V+ +VG FYE +DA V GL G S +G P
Sbjct: 392 GMRRW--WQLKSQNFDAVICYKVGKFYELYHMDAVTGVNELGLIFMKG----SWAHSGFP 445
Query: 185 VVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSR 217
+ L + GY + VE+ + P +R
Sbjct: 446 ETAFGRFSAILVQKGYKIARVEQTETPEMMEAR 478
Score = 40 (19.1 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 466 EILHMYGNSELNEILELLMDPTWVATG 492
E+ HM + +NE+ + M +W +G
Sbjct: 417 ELYHMDAVTGVNELGLIFMKGSWAHSG 443
>UNIPROTKB|E1BWV7 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000400 "four-way
junction DNA binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0032143 "single thymine insertion binding" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032405 "MutLalpha complex
binding" evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] [GO:0051096
"positive regulation of helicase activity" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0000287
GO:GO:0043531 GO:GO:0003682 GO:GO:0016887 GO:GO:0006298
GO:GO:0000790 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00571940
Ensembl:ENSGALT00000014567 ArrayExpress:E1BWV7 Uniprot:E1BWV7
Length = 1357
Score = 275 (101.9 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 92/330 (27%), Positives = 153/330 (46%)
Query: 626 KQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGL-------SSEL 678
+ L + K + G + + T ++E+ L A + A + + +R L S +
Sbjct: 985 RNLPEEYELKSTRKGYKRYWTKEIEKMLAELINAEERRDAALKDCMRRLFYNFDKNSQDW 1044
Query: 679 QTKINILVFASMLLVIGKALFAHVSEGR--RRKWVFP---ALKDIELDGAN--CLKMNGL 731
QT + + +L+ + A ++ +G R + P A +EL A C+
Sbjct: 1045 QTAVQCIAVLDVLMSL--ANYSQDGDGPLCRPVILLPVDSAPPFLELKNARHPCITKTFF 1102
Query: 732 SPYWF--DAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESA 789
+ D GS + S L+TGPN GGKS+L+R ++ G VPAE
Sbjct: 1103 GDDFIPNDIVIGSKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVC 1162
Query: 790 SIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGT 849
+ D + + + D G+S+F VE+SE SI+ T SLVL+DE+ RGT T GT
Sbjct: 1163 RLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGT 1222
Query: 850 CIAGSIIETL-DNIGCLGIVSTHLHGIF-----SLPLKIKNAAYKAMG-TEYLDGQTVP- 901
IA +++ L +NI C + STH H + S +++ + A +E +T+
Sbjct: 1223 AIASAVVRELAENIKCRTLFSTHYHSLVEDYSGSAAVRLGHMACMVENESEDPSQETITF 1282
Query: 902 TWKLVDGICRESLAFETAKREGVPETIIQR 931
+K ++G C +S F A+ +PE IIQ+
Sbjct: 1283 LYKFIEGACPKSYGFNAARLADIPEEIIQK 1312
Score = 69 (29.3 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 27/93 (29%), Positives = 38/93 (40%)
Query: 125 GTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCP 184
G W Q KS+ V+ +VG FYE +DA V GL G S +G P
Sbjct: 408 GMRRW--WQLKSQNFDAVICYKVGKFYELYHMDAVTGVNELGLIFMKG----SWAHSGFP 461
Query: 185 VVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSR 217
+ L + GY + VE+ + P +R
Sbjct: 462 ETAFGRFSAILVQKGYKIARVEQTETPEMMEAR 494
Score = 40 (19.1 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 466 EILHMYGNSELNEILELLMDPTWVATG 492
E+ HM + +NE+ + M +W +G
Sbjct: 433 ELYHMDAVTGVNELGLIFMKGSWAHSG 459
>MGI|MGI:1343961 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IGI;IMP] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=IGI;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IMP] [GO:0009411
"response to UV" evidence=IMP] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=ISO;IDA] [GO:0043570 "maintenance of
DNA repeat elements" evidence=IBA] [GO:0045190 "isotype switching"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO;IMP] [GO:0051096 "positive regulation
of helicase activity" evidence=ISO] [GO:0097193 "intrinsic
apoptotic signaling pathway" evidence=IMP] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 MGI:MGI:1343961 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0003684 GO:GO:0043531 GO:GO:0003682
GO:GO:0000790 GO:GO:0045190 GO:GO:0007131 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0043570 GO:GO:0045910 SMART:SM00293
GO:GO:0008094 GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 HOGENOM:HOG000243127
KO:K08737 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 CTD:2956
GeneTree:ENSGT00550000075024 HOVERGEN:HBG000101 OrthoDB:EOG4CG07F
EMBL:U42190 EMBL:AF031087 EMBL:AF031085 EMBL:AF031086 EMBL:BC051160
EMBL:BC051634 EMBL:U61388 EMBL:U61389 IPI:IPI00323790
RefSeq:NP_034960.1 UniGene:Mm.18210 ProteinModelPortal:P54276
SMR:P54276 IntAct:P54276 STRING:P54276 PhosphoSite:P54276
PaxDb:P54276 PRIDE:P54276 Ensembl:ENSMUST00000005503 GeneID:17688
KEGG:mmu:17688 InParanoid:Q6GTK8 ChiTaRS:MSH6 NextBio:292264
Bgee:P54276 CleanEx:MM_MSH6 Genevestigator:P54276
GermOnline:ENSMUSG00000005370 Uniprot:P54276
Length = 1358
Score = 261 (96.9 bits), Expect = 4.7e-21, Sum P(3) = 4.7e-21
Identities = 62/185 (33%), Positives = 99/185 (53%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
L+TGPN GGKS+L+R +++ G VPAE + D + + + D G+S+F
Sbjct: 1129 LVTGPNMGGKSTLIRQAGLLAVMAQLGCYVPAEKCRLTPVDRVFTRLGASDRIMSGESTF 1188
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 873
VE+SE SI+ T+ SLVL+DE+ RGT T GT IA ++++ L + I C + STH H
Sbjct: 1189 FVELSETASILRHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH 1248
Query: 874 GI---FSLPLKIKNAAYKAMGTEYLDGQTVPT----WKLVDGICRESLAFETAKREGVPE 926
+ +S + ++ M + + T +K + G C +S F A+ +PE
Sbjct: 1249 SLVEDYSKSVCVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPE 1308
Query: 927 TIIQR 931
+IQ+
Sbjct: 1309 EVIQK 1313
Score = 94 (38.1 bits), Expect = 4.7e-21, Sum P(3) = 4.7e-21
Identities = 35/105 (33%), Positives = 46/105 (43%)
Query: 121 SLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPK 180
S G W Q KS+ V+ +VG FYE +DA I V GL G S
Sbjct: 404 SCTPGMRKW--WQLKSQNFDLVIFYKVGKFYELYHMDAVIGVSELGLIFMKGNWAHS--- 458
Query: 181 AGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPT--QARSRKSRFIS 223
G P + + D L + GY V VE+ + P +AR RK +S
Sbjct: 459 -GFPEIAFGRFSDSLVQKGYKVARVEQTETPEMMEARCRKMAHVS 502
Score = 42 (19.8 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
Identities = 27/115 (23%), Positives = 46/115 (40%)
Query: 518 DGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAV--TEDFL 575
+G SD + SE D+ + KG KR +A+ + ++L +
Sbjct: 272 EGSSDDASSGVGDSDSE---DLGTFGKGAPKRKRAM--VAQGGLRRKSLKKETGSAKRAT 326
Query: 576 PIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKP 630
PI+S K+T + P+ ++ H + PTVW E ++ LKP
Sbjct: 327 PILSETKSTLSAFSAPQNS--ESQTHVSGGGNDSS-GPTVWY----HETLEWLKP 374
Score = 37 (18.1 bits), Expect = 4.7e-21, Sum P(3) = 4.7e-21
Identities = 5/25 (20%), Positives = 15/25 (60%)
Query: 458 CRIKNVLDEILHMYGNSELNEILEL 482
C++ +L+E+ + + L +++ L
Sbjct: 866 CKVSGLLEEVAGGFTSKTLKQVVTL 890
>FB|FBgn0015546 [details] [associations]
symbol:spel1 "spellchecker1" species:7227 "Drosophila
melanogaster" [GO:0006298 "mismatch repair" evidence=ISS;NAS;IMP]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0006301 "postreplication repair" evidence=IBA;NAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0042771 EMBL:AE014134 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GeneTree:ENSGT00550000074867 EMBL:U17893
RefSeq:NP_001014482.1 RefSeq:NP_001246031.1 RefSeq:NP_523565.2
UniGene:Dm.2676 ProteinModelPortal:P43248 SMR:P43248 DIP:DIP-21499N
IntAct:P43248 MINT:MINT-1547583 STRING:P43248 PaxDb:P43248
EnsemblMetazoa:FBtr0080630 EnsemblMetazoa:FBtr0309281 GeneID:34842
KEGG:dme:Dmel_CG4215 UCSC:CG4215-RA CTD:34842 FlyBase:FBgn0015546
InParanoid:P43248 OrthoDB:EOG4S1RP5 PhylomeDB:P43248
GenomeRNAi:34842 NextBio:790493 Bgee:P43248 GermOnline:CG4215
Uniprot:P43248
Length = 917
Score = 277 (102.6 bits), Expect = 6.8e-21, Sum P(2) = 6.8e-21
Identities = 88/291 (30%), Positives = 143/291 (49%)
Query: 655 RYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPA 714
RY E +++ + G ++ L N L L+ FA + +V P
Sbjct: 567 RYEEQQLSIVEEIIHVAVGYAAPLTLLNNELAQLDCLVS-----FAIAARSAPTPYVRP- 620
Query: 715 LKDIELDGANCLKMNGLSPYWFDAAEG-SAVHNTVDMQ----SLFLLTGPNGGGKSSLLR 769
K +E +GA L + + + E + + N+VD + ++F++TGPN GGKS+ +R
Sbjct: 621 -KMLE-EGARELVLEDVRHPCLELQEHVNFIANSVDFKKEECNMFIITGPNMGGKSTYIR 678
Query: 770 SICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 829
S+ A L+ G VP A+I D+I+ + + D+ G S+F VEM E I+ T
Sbjct: 679 SVGTAVLMAHIGAFVPCSLATISMVDSILGRVGASDNIIKGLSTFMVEMIETSGIIRTAT 738
Query: 830 SRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLHGIFSLP--LK-IKNA 885
+SLV+IDE+ RGT T +G IA SI E L C + +TH H I L L +KN
Sbjct: 739 DKSLVIIDELGRGTSTYEGCGIAWSIAEHLAKETKCFTLFATHFHEITKLAETLSTVKNC 798
Query: 886 AYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLY 936
A+ D T+ +++ G+ +S + A+ PE ++Q A+++Y
Sbjct: 799 HMAAVADA--DDFTL-LYQVRSGVMEKSFGIQVARLANFPEHVVQNAQEVY 846
Score = 59 (25.8 bits), Expect = 6.8e-21, Sum P(2) = 6.8e-21
Identities = 29/115 (25%), Positives = 49/115 (42%)
Query: 437 IPEFTCLVKLLELREANHIEFCRIKNVLD------EILHMYGNSELNEIL-----ELLMD 485
IP+ L K L R+AN + RI V+ ++LH NS + ++ L D
Sbjct: 385 IPDILMLTKKLMRRKANLQDLFRIYQVILRTPKILKVLHELDNSTIESVICAPFKSFLKD 444
Query: 486 PTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDME 540
TGLK E +V+ ++ GE + + D ++ + +E + ME
Sbjct: 445 ----LTGLKQMVEQVVD---FEAIERGEYL-VKASFDSRLMELQQMMTELYSKME 491
>UNIPROTKB|Q7RIF1 [details] [associations]
symbol:PY03673 "Phosphatase" species:73239 "Plasmodium
yoelii yoelii" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006301 "postreplication repair" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045128 "negative regulation of reciprocal
meiotic recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
EMBL:AABL01001075 RefSeq:XP_723860.1 ProteinModelPortal:Q7RIF1
GeneID:3789185 KEGG:pyo:PY03673 EuPathDB:PlasmoDB:PY03673
eggNOG:NOG330919 Uniprot:Q7RIF1
Length = 1427
Score = 167 (63.8 bits), Expect = 9.3e-21, Sum P(5) = 9.3e-21
Identities = 66/253 (26%), Positives = 111/253 (43%)
Query: 84 MWWQERLQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVL 143
++W ++L+ + + ++ + LK NLL D G LK LN E K K+ ++
Sbjct: 137 IYWIKKLEKLKNINAINCIEYLKGDNLLYFDHYKNKGLLK--FLNDE----KKKYNNCII 190
Query: 144 LCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVV--NLRQTLDDLTRNGYS 201
L RVGDFYE G+D+ L+E+ + K C + ++ + L LT N +
Sbjct: 191 LSRVGDFYETYGLDSIFLIEFLNIKKMNN-------KLSCGFIKSSINKALSILTNNNLN 243
Query: 202 VCIVEEVQGPTQARSRKSRFISGHAHPGSP-------YVF------GLVGID-------- 240
VCI EE+ Q+ K R++S P P Y F + D
Sbjct: 244 VCIYEEIN--EQSFKAKKRYLSQIVTPEMPIYLNNIQYCFENDKNKDEINEDNTNNSFPN 301
Query: 241 -HDLDFPEPMPVIGVSRSAKGYCIISILE-TMKTYSLEDGLTEDALVTKLRTSRYHHLFL 298
+DLD E ++ + K +S + ++KT S+ D +T D L L+ + + ++
Sbjct: 302 YYDLDIKE---IVCIYIQGKNILSLSKINLSLKTISIYDNITFDVLNVYLKNTNFLKAYI 358
Query: 299 HTSLRQNTSGTSR 311
H NT+ T +
Sbjct: 359 HQ--HNNTTFTKK 369
Score = 126 (49.4 bits), Expect = 9.3e-21, Sum P(5) = 9.3e-21
Identities = 52/217 (23%), Positives = 86/217 (39%)
Query: 731 LSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESAS 790
L PY + + + + + LLTG N GK++L +I L G+ P + S
Sbjct: 926 LKPYNINKDNVTKYNVLLKKKKFILLTGENMSGKTTLSFTIMCILFLSNLGMYAPCDKRS 985
Query: 791 I--PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-----------TTSRSL-VLI 836
I + + L +Y + S F+ + I SI+ T + +L
Sbjct: 986 IVGKFREFYSLKNINYQEQIENMSLFREQTHYINSIIEEIKENYSINKKNTRDEEIFILF 1045
Query: 837 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG--TEY 894
DE C T I ++ E L C GI+ +H + + + + +N +K + Y
Sbjct: 1046 DEPCIATTPLDNAVIISAVAEYLKKY-C-GIIISHNYDLLNKIYQSENIEFKKINDNVNY 1103
Query: 895 L-DGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 930
L D L DGIC+ S A ET K +++
Sbjct: 1104 LRDQPNGCVLTLEDGICKSSQALETCKYTNTDSNVLK 1140
Score = 97 (39.2 bits), Expect = 9.3e-21, Sum P(5) = 9.3e-21
Identities = 24/101 (23%), Positives = 51/101 (50%)
Query: 621 GEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQT 680
G+++ + ++ KG + + F T V + ++ Y + + K K+ E++R ++ L +
Sbjct: 722 GKDEAQHFFHPLNKKG-DIMKNIFVTDDVLKKIKLYFASINRKKKKINEIIRNINMNLAS 780
Query: 681 KINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELD 721
++IL F S L I +A + H R W P K ++++
Sbjct: 781 SVHILSFVSNFLQIVQAFYNHTINSISRGWNLPICKHLDVN 821
Score = 48 (22.0 bits), Expect = 9.3e-21, Sum P(5) = 9.3e-21
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 955 SIIGASCVYVMLRP-DKK---LYIGQTDDLDGRIRAHRGKEGMQSASFL 999
SI+ C++ + +KK YIG +D++ RI+ H K +++ S L
Sbjct: 1329 SIVYILCIFENFKKVEKKKPYFYIGISDNISERIKYHT-KNLLKNKSLL 1376
Score = 46 (21.3 bits), Expect = 9.3e-21, Sum P(5) = 9.3e-21
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 344 KVKELYGLENEVTFRNVTVSYE 365
K+ EL+ +EN F N S+E
Sbjct: 369 KITELFKIENYYLFNNFNNSFE 390
Score = 43 (20.2 bits), Expect = 2.2e-15, Sum P(5) = 2.2e-15
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 445 KLLE-LREANHIEFCRIKNVLDEILHMYGNSEL-NEILELLMD 485
K+LE L + N I KN ++EI +Y N N+ L +++
Sbjct: 883 KILENLDKNNKILENLDKNTIEEITKIYNNKNYTNDTLTYIIE 925
Score = 38 (18.4 bits), Expect = 7.0e-08, Sum P(5) = 7.0e-08
Identities = 20/106 (18%), Positives = 39/106 (36%)
Query: 35 RPSTLLLTRRFGQAYCFKDRRSLRGITKSSKKVKGSNDNILSDKDLSHIMWWQERL---Q 91
R + L ++F + + + I + K +D+I +KD +
Sbjct: 30 RKGIIYLNKKFINSLIYTKEDEIYKINDLKESYKLRDDDIFENKDKYISKEDTNNIISNS 89
Query: 92 MCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSK 137
+C K S L + NL+NG ++E+ +K+K
Sbjct: 90 LCEKLSNLENTKCENDETNISCSSNLRNGFTPS---DYELRLYKNK 132
Score = 38 (18.4 bits), Expect = 4.0e-07, Sum P(5) = 4.0e-07
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 455 IEFCRIKNVLDEILHMYGNSELNEILELL 483
IEF IK + +++ + S +N+ L +L
Sbjct: 209 IEFLNIKKMNNKLSCGFIKSSINKALSIL 237
Score = 37 (18.1 bits), Expect = 5.0e-07, Sum P(5) = 5.0e-07
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 504 CRLASVRIGEMISLDGESDQKICSYDNIPSEFFE 537
C I + +S+ ++ +C Y+ I + F+
Sbjct: 223 CGFIKSSINKALSILTNNNLNVCIYEEINEQSFK 256
>CGD|CAL0001526 [details] [associations]
symbol:MSH2 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0032302 "MutSbeta complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032138 "single base insertion or deletion
binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 CGD:CAL0001526 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AACQ01000086 EMBL:AACQ01000085
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08735 RefSeq:XP_715402.1
RefSeq:XP_715472.1 ProteinModelPortal:Q5A102 STRING:Q5A102
GeneID:3642853 GeneID:3642939 KEGG:cal:CaO19.10605
KEGG:cal:CaO19.3093 Uniprot:Q5A102
Length = 873
Score = 273 (101.2 bits), Expect = 1.0e-20, Sum P(3) = 1.0e-20
Identities = 86/316 (27%), Positives = 143/316 (45%)
Query: 621 GEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQT 680
G+ Q K+L+ K G +F+T++++ + Y +A + K E+++ + S T
Sbjct: 504 GKSQYKELQTV------KSGV-FFTTIEMKRLSQEYTKAYDEYNVKQSEVIKEILSLTLT 556
Query: 681 KINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAE 740
+L S L + + + P L E L + P +
Sbjct: 557 YEPVLQSLSSTLAHLDVITCFATTAMLNSYTQPKLFPFESSRKINL-IESRHPLLEVQDD 615
Query: 741 GSAVHNTVDMQS--LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPA-ESASIPYFDAI 797
+ + N V M ++TGPN GGKS+ +R I +L+ G +PA + A +P FDAI
Sbjct: 616 INFISNDVKMDDKHFAIITGPNMGGKSTYIRQIGTIALMAQVGSFIPANDGAELPIFDAI 675
Query: 798 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 857
+ + + DS G S+F +EM E SI+ T+ SL++IDE+ RGT T G +A +I E
Sbjct: 676 LSRVGAGDSQLKGLSTFMIEMLETSSILATATANSLIIIDELGRGTSTYDGFGLAWAISE 735
Query: 858 TLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFE 917
L C + +TH H + L K + E + +K+ GI S
Sbjct: 736 ELIKRKCFAVFATHFHELSQLSEKYDGVENLNLMAEQTNEDITLIYKVGPGISNTSFGIS 795
Query: 918 TAKREGVPETIIQRAE 933
A++ +PE I+ A+
Sbjct: 796 VAEKLHMPEKIVNMAK 811
Score = 70 (29.7 bits), Expect = 1.0e-20, Sum P(3) = 1.0e-20
Identities = 29/107 (27%), Positives = 50/107 (46%)
Query: 464 LDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQ 523
L+E++++Y L L ++ + A LK D + L + C L I S D D
Sbjct: 379 LNEVVNLYQLVSLLPNLTEILTIDYYAKPLKKDEQALSKFCELVETTIDLDTSFD--KDY 436
Query: 524 KIC-SYDNIPSEFFEDMESTWKGRVKRIHIEP-EIAEVEMAAEALSL 568
KI +D SE +MES +K + +++E + ++ A+ L L
Sbjct: 437 KIKPDFDPSLSEISNNMESAFKA-INDLYLEAGDDLNLDTASNKLKL 482
Score = 37 (18.1 bits), Expect = 1.0e-20, Sum P(3) = 1.0e-20
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 149 DFYEAIGIDACILVE 163
D++ A+G DA ++ E
Sbjct: 43 DYFTALGSDADLIAE 57
>UNIPROTKB|Q8F496 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:189518 "Leptospira interrogans serovar Lai str. 56601"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300 OMA:HYFELTV
EMBL:AE010300 GenomeReviews:AE010300_GR KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:NP_712327.1 ProteinModelPortal:Q8F496
PaxDb:Q8F496 GeneID:1151489 KEGG:lil:LA_2146 PATRIC:22385139
BioCyc:LINT189518:GJBB-1740-MONOMER Uniprot:Q8F496
Length = 848
Score = 260 (96.6 bits), Expect = 1.0e-20, Sum P(3) = 1.0e-20
Identities = 93/309 (30%), Positives = 151/309 (48%)
Query: 639 VGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKIN-ILVFASMLLV---- 693
VG E F+ K+EE +ER +A + E+ R +E + +L F+S LL
Sbjct: 484 VGSERFTMPKLEE-IER---TILEADEIIQEIER---TEFNRMVEEVLKFSSSLLSFSEE 536
Query: 694 IGKALF--AHVSEGRRRKWVFPALKD---IELDGANCLKMNGLSPYWFDAAEGSAVHNTV 748
IG F + ++ + W+ P L + ++L + + P + S +T
Sbjct: 537 IGDLDFQISLLTAKDKFGWIRPKLSEDRSLDLSDSRHPVVEATLPPGQEFIPNSVYLDTQ 596
Query: 749 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 808
D +++ +LTGPN GKS+ +R I +L G VPA+SA +P D + + + D+
Sbjct: 597 D-KAIAVLTGPNMAGKSTFMRQIALNQILFQIGAFVPAKSAKLPIVDKLFTRIGAGDNLT 655
Query: 809 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG-- 866
G+S+F VEM E +I+ T SL+L DE+ RGT T G IA SI+E L ++
Sbjct: 656 AGESTFFVEMKETANILNHYTEDSLILFDEVGRGTSTYDGMSIAWSILEYLSSLSVRPKT 715
Query: 867 IVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 926
I +TH H + L ++ + T + + + K+ G ++S AK GVPE
Sbjct: 716 IFATHYHELTELS-RLGGIFNLYLETLEKEDRVLFLRKVKVGKAKKSFGIYVAKIAGVPE 774
Query: 927 TIIQRAEDL 935
I++RA +L
Sbjct: 775 PIVKRAAEL 783
Score = 81 (33.6 bits), Expect = 1.0e-20, Sum P(3) = 1.0e-20
Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 130 EMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLR 189
+ L K FP +L R+GDFYE DA I L+ R ++P G P +
Sbjct: 27 QFLAIKKDFPDTILFFRMGDFYEMFLEDAKIASSI--LDIALTKRQNAVPMCGIPYHSKD 84
Query: 190 QTLDDLTRNGYSVCIVEEVQGPTQARSR 217
+ L G + I E+ + P +A S+
Sbjct: 85 NYISRLLNAGKKIAICEQSK-PEEAGSK 111
Score = 39 (18.8 bits), Expect = 1.0e-20, Sum P(3) = 1.0e-20
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 245 FPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQ 304
FPE PV+ SR K ++ + +L+D + ++T+ R + + + L
Sbjct: 302 FPECDPVVLYSRWEKQDILLKTVLAPYITALKDFGDLERILTRFRGNHAYPRDFRSLLNS 361
Query: 305 NTSG 308
+SG
Sbjct: 362 ISSG 365
Score = 38 (18.4 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 211 PTQARSRKSRFISGHAHPGS--PYVFG 235
P + + S FI HPG P + G
Sbjct: 382 PIEELKKISDFIQERLHPGDDLPVILG 408
>UNIPROTKB|F1SQH4 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
SUPFAM:SSF48334 GeneTree:ENSGT00550000074867 EMBL:CU928288
RefSeq:XP_003481267.1 Ensembl:ENSSSCT00000009231 GeneID:100739713
KEGG:ssc:100739713 ArrayExpress:F1SQH4 Uniprot:F1SQH4
Length = 450
Score = 270 (100.1 bits), Expect = 3.1e-20, P = 3.1e-20
Identities = 90/311 (28%), Positives = 145/311 (46%)
Query: 632 VDSKGRKVGEEWFSTLKVEEALER--YHEAGAKAKAKVLELLRGLSSELQTKINILVFAS 689
+ G K ++L E + Y EA +++ + G +QT ++L A
Sbjct: 60 IQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQNAIVKEIVNISSGYVEPMQTLNDVL--AQ 117
Query: 690 MLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFD---AAEGSAVHN 746
+ V+ FAHVS G +V P + + + G LK + + A + VH
Sbjct: 118 LDAVVS---FAHVSNGAPVPYVRPVILE-KGQGRITLKASRHACVEVQDEVAFIPNDVHF 173
Query: 747 TVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDS 806
D Q ++TGPN GGKS+ +R L+ G VP ESA + D I+ + + DS
Sbjct: 174 EKDKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDS 233
Query: 807 PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCL 865
G S+F EM E SI+ + T SL++IDE+ RGT T G +A +I E + IG
Sbjct: 234 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAF 293
Query: 866 GIVSTHLHGIFSLPLKI---KNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 922
+ +TH H + +L +I N A+ TE + T+ +++ G+C +S A+
Sbjct: 294 CMFATHFHELTALANQIPTVNNLHVTALTTE--ETLTM-LYQVKKGVCDQSFGIHVAELA 350
Query: 923 GVPETIIQRAE 933
P +I+ A+
Sbjct: 351 NFPRHVIECAK 361
>UNIPROTKB|A6V1G8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
EMBL:CP000744 GenomeReviews:CP000744_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_001346903.1
ProteinModelPortal:A6V1G8 SMR:A6V1G8 STRING:A6V1G8 GeneID:5355863
KEGG:pap:PSPA7_1519 PATRIC:19824849
BioCyc:PAER381754:GHMY-1583-MONOMER Uniprot:A6V1G8
Length = 855
Score = 238 (88.8 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 91/303 (30%), Positives = 134/303 (44%)
Query: 640 GEEWFST--LKV--EEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIG 695
G E F T LK ++AL A A+ KA ELL L L + AS L +
Sbjct: 496 GAERFITPELKAFEDKALSAQSRALAREKALYEELLERLIGHLAP---LQDSASALAELD 552
Query: 696 KALFAHVSEGRRRKWVFPALKDIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDMQS-- 752
+ A+++E R + +E CL + G P E V N + + +
Sbjct: 553 --VLANLAE-RALNLDLNRPRFVE---HTCLHIEQGRHPVVEQVLETPFVANDLALDADT 606
Query: 753 -LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 811
+ ++TGPN GGKS+ +R LL G VPA + D I + S D A G+
Sbjct: 607 RMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCELSLVDRIFTRIGSSDDLAGGR 666
Query: 812 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 871
S+F VEMSE +I+ T +SLVL+DE+ RGT T G +A + E L + +TH
Sbjct: 667 STFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLSLAWAAAEDLARTRAFTLFATH 726
Query: 872 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 931
+ LP A + + + V ++ G +S A+ GVP +IQR
Sbjct: 727 YFELTVLPESQPAVANVHLNATEHNERIVFLHHVLPGPASQSYGLAVAQLAGVPSPVIQR 786
Query: 932 AED 934
A +
Sbjct: 787 ARE 789
Score = 92 (37.4 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 29/104 (27%), Positives = 48/104 (46%)
Query: 130 EMLQFKSKFPREVLLCRVGDFYEAIGIDA---CILVEYAGLNPFGGLRPESIPKAGCPVV 186
+ + K + P +++ R+GDFYE DA L++ L G ++IP AG P
Sbjct: 13 QYFKLKHQHPDQLMFYRMGDFYELFYEDAKKAAKLLDIT-LTARGQSGGKAIPMAGIPFH 71
Query: 187 NLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGS 230
+ L L + G SV I E++ P ++ R + PG+
Sbjct: 72 SAEGYLAKLVKLGESVAICEQIGDPATSKGPVERQVVRIITPGT 115
>WB|WBGene00003422 [details] [associations]
symbol:msh-6 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0032301 "MutSalpha complex" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 250 (93.1 bits), Expect = 5.3e-20, Sum P(3) = 5.3e-20
Identities = 63/190 (33%), Positives = 101/190 (53%)
Query: 752 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 811
++ LLTGPN GGKS+L+R ++L G MVPA S + D I + + D G+
Sbjct: 956 AVMLLTGPNMGGKSTLMRQTAVLAILAHIGSMVPAFSMRLTPIDRIFTRIGANDRIMCGE 1015
Query: 812 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 870
S+F +E+ E ++ T SL+L+DE+ RGT T GT IA ++++ + D++ C ST
Sbjct: 1016 STFFIELKETDIMLKNATKHSLLLVDELGRGTSTFDGTAIASAVLQKISDDLACRTFFST 1075
Query: 871 HLHGI---FSLPLKIKNAAYKAM-GTEYLDGQTVPT----WKLVDGICRESLAFETAKRE 922
H H I F+ ++ A K + E + T+ ++L GIC +S F AK
Sbjct: 1076 HYHSICDSFTNHPNVRLAHMKCVVDKENNEDPTMEDVTFLYELESGICPKSYGFYAAKLA 1135
Query: 923 GVPETIIQRA 932
G+ +++ A
Sbjct: 1136 GIDHQVVRNA 1145
Score = 85 (35.0 bits), Expect = 5.3e-20, Sum P(3) = 5.3e-20
Identities = 29/92 (31%), Positives = 41/92 (44%)
Query: 129 WEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNL 188
W M KS+ +LL +VG FYE +DA +V LN +R S AG P
Sbjct: 258 WTM---KSQHFDTILLFKVGKFYETYHMDAVEVVR--ALN-IAFMRG-SYAHAGFPEHAA 310
Query: 189 RQTLDDLTRNGYSVCIVEEVQGPTQARSRKSR 220
+ D L +GY V +E+ + P R +
Sbjct: 311 SKFADQLMNHGYKVARIEQTETPQMLEERNQK 342
Score = 45 (20.9 bits), Expect = 5.3e-20, Sum P(3) = 5.3e-20
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 618 STPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEE 651
STP EQ+ AV+ + K+G++ +T +V E
Sbjct: 838 STPDSEQLVAALDAVEKEKSKLGDD--ATRRVFE 869
Score = 41 (19.5 bits), Expect = 8.8e-16, Sum P(2) = 8.8e-16
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 3 WLATRNAVVSFPKLRSLSSVFLRSPLRNYSP 33
WL T V SF L SL+ SP P
Sbjct: 878 WLETVKLVSSFDVLTSLALFAKSSPFEMCMP 908
Score = 37 (18.1 bits), Expect = 3.5e-19, Sum P(3) = 3.5e-19
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 267 LETMKTYSLEDGLTEDALVTK 287
LET+K S D LT AL K
Sbjct: 879 LETVKLVSSFDVLTSLALFAK 899
>UNIPROTKB|Q9N3T8 [details] [associations]
symbol:msh-6 "Protein MSH-6" species:6239 "Caenorhabditis
elegans" [GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 250 (93.1 bits), Expect = 5.3e-20, Sum P(3) = 5.3e-20
Identities = 63/190 (33%), Positives = 101/190 (53%)
Query: 752 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 811
++ LLTGPN GGKS+L+R ++L G MVPA S + D I + + D G+
Sbjct: 956 AVMLLTGPNMGGKSTLMRQTAVLAILAHIGSMVPAFSMRLTPIDRIFTRIGANDRIMCGE 1015
Query: 812 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 870
S+F +E+ E ++ T SL+L+DE+ RGT T GT IA ++++ + D++ C ST
Sbjct: 1016 STFFIELKETDIMLKNATKHSLLLVDELGRGTSTFDGTAIASAVLQKISDDLACRTFFST 1075
Query: 871 HLHGI---FSLPLKIKNAAYKAM-GTEYLDGQTVPT----WKLVDGICRESLAFETAKRE 922
H H I F+ ++ A K + E + T+ ++L GIC +S F AK
Sbjct: 1076 HYHSICDSFTNHPNVRLAHMKCVVDKENNEDPTMEDVTFLYELESGICPKSYGFYAAKLA 1135
Query: 923 GVPETIIQRA 932
G+ +++ A
Sbjct: 1136 GIDHQVVRNA 1145
Score = 85 (35.0 bits), Expect = 5.3e-20, Sum P(3) = 5.3e-20
Identities = 29/92 (31%), Positives = 41/92 (44%)
Query: 129 WEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNL 188
W M KS+ +LL +VG FYE +DA +V LN +R S AG P
Sbjct: 258 WTM---KSQHFDTILLFKVGKFYETYHMDAVEVVR--ALN-IAFMRG-SYAHAGFPEHAA 310
Query: 189 RQTLDDLTRNGYSVCIVEEVQGPTQARSRKSR 220
+ D L +GY V +E+ + P R +
Sbjct: 311 SKFADQLMNHGYKVARIEQTETPQMLEERNQK 342
Score = 45 (20.9 bits), Expect = 5.3e-20, Sum P(3) = 5.3e-20
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 618 STPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEE 651
STP EQ+ AV+ + K+G++ +T +V E
Sbjct: 838 STPDSEQLVAALDAVEKEKSKLGDD--ATRRVFE 869
Score = 41 (19.5 bits), Expect = 8.8e-16, Sum P(2) = 8.8e-16
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 3 WLATRNAVVSFPKLRSLSSVFLRSPLRNYSP 33
WL T V SF L SL+ SP P
Sbjct: 878 WLETVKLVSSFDVLTSLALFAKSSPFEMCMP 908
Score = 37 (18.1 bits), Expect = 3.5e-19, Sum P(3) = 3.5e-19
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 267 LETMKTYSLEDGLTEDALVTK 287
LET+K S D LT AL K
Sbjct: 879 LETVKLVSSFDVLTSLALFAK 899
>UNIPROTKB|F1SQH6 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074867 EMBL:CU928288 EMBL:FP102206
EMBL:FP476038 Ensembl:ENSSSCT00000009229 OMA:KGACDQS
ArrayExpress:F1SQH6 Uniprot:F1SQH6
Length = 584
Score = 270 (100.1 bits), Expect = 7.9e-20, P = 7.9e-20
Identities = 90/311 (28%), Positives = 145/311 (46%)
Query: 632 VDSKGRKVGEEWFSTLKVEEALER--YHEAGAKAKAKVLELLRGLSSELQTKINILVFAS 689
+ G K ++L E + Y EA +++ + G +QT ++L A
Sbjct: 194 IQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQNAIVKEIVNISSGYVEPMQTLNDVL--AQ 251
Query: 690 MLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFD---AAEGSAVHN 746
+ V+ FAHVS G +V P + + + G LK + + A + VH
Sbjct: 252 LDAVVS---FAHVSNGAPVPYVRPVILE-KGQGRITLKASRHACVEVQDEVAFIPNDVHF 307
Query: 747 TVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDS 806
D Q ++TGPN GGKS+ +R L+ G VP ESA + D I+ + + DS
Sbjct: 308 EKDKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDS 367
Query: 807 PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCL 865
G S+F EM E SI+ + T SL++IDE+ RGT T G +A +I E + IG
Sbjct: 368 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAF 427
Query: 866 GIVSTHLHGIFSLPLKI---KNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 922
+ +TH H + +L +I N A+ TE + T+ +++ G+C +S A+
Sbjct: 428 CMFATHFHELTALANQIPTVNNLHVTALTTE--ETLTM-LYQVKKGVCDQSFGIHVAELA 484
Query: 923 GVPETIIQRAE 933
P +I+ A+
Sbjct: 485 NFPRHVIECAK 495
>CGD|CAL0006305 [details] [associations]
symbol:MSH6 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032138 "single base
insertion or deletion binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0006305 GO:GO:0005524 GO:GO:0006298
EMBL:AACQ01000010 EMBL:AACQ01000009 GO:GO:0030983 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
PIRSF:PIRSF037677 RefSeq:XP_722156.1 RefSeq:XP_722270.1
ProteinModelPortal:Q5AL33 STRING:Q5AL33 GeneID:3636059
GeneID:3636161 KEGG:cal:CaO19.12411 KEGG:cal:CaO19.4945
Uniprot:Q5AL33
Length = 1214
Score = 255 (94.8 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 66/183 (36%), Positives = 97/183 (53%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
LLTG N GKS+L+R+ A +L G +PAESA + D IM + + D+ GKS+F
Sbjct: 964 LLTGANAAGKSTLMRTTALAIILSQIGCYIPAESAELTPVDRIMTRLGANDNILQGKSTF 1023
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 873
VE+SE + I++ T RSLV++DE+ RG ++ G IA S++ L ++ LG +TH +
Sbjct: 1024 FVELSETKKILSNATPRSLVILDELGRGGSSSDGFAIAESVLHHLATHVQSLGFFATH-Y 1082
Query: 874 GIFSLPLKIKNAAYKA-MGTEYLDGQTVPT--WKLVDGICRESLAFETAKREGVPETIIQ 930
G L K + MG G T +KL G +S A G+P+ I+
Sbjct: 1083 GTLGLSFKTHPQIKQLRMGIVVDSGSRNITFLYKLETGTAPKSFGMNVASMCGIPDAIVD 1142
Query: 931 RAE 933
AE
Sbjct: 1143 NAE 1145
Score = 74 (31.1 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 24/75 (32%), Positives = 33/75 (44%)
Query: 133 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTL 192
Q KSK V+ + G FYE DA I L GG R ++ AG P ++
Sbjct: 324 QIKSKMWNTVVFFQKGKFYELYENDAVIANTQFDLKIAGGGRA-NMKLAGIPEMSFEYWA 382
Query: 193 DDLTRNGYSVCIVEE 207
+ +GY V VE+
Sbjct: 383 KEFISHGYKVAKVEQ 397
Score = 37 (18.1 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 614 TVWASTPGEEQIKQLKPAVDSKGRK 638
T+ S P + KQ+KP + S ++
Sbjct: 85 TLVTSQPDDSGDKQIKPQLASSPKR 109
>POMBASE|SPCC285.16c [details] [associations]
symbol:msh6 "MutS protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=ISO]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPCC285.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0006298 GO:GO:0043570
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677 EMBL:AF207839
PIR:T41262 RefSeq:NP_588344.1 ProteinModelPortal:O74502
STRING:O74502 EnsemblFungi:SPCC285.16c.1 GeneID:2539215
KEGG:spo:SPCC285.16c HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
NextBio:20800385 Uniprot:O74502
Length = 1254
Score = 289 (106.8 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 69/187 (36%), Positives = 102/187 (54%)
Query: 752 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 811
++ +LTGPN GKS+LLR +C A ++ G VPA+ ASI +I + + D +
Sbjct: 1018 NMIVLTGPNMAGKSTLLRQVCIAVIMAQLGCWVPAKRASITPMTSIYTRLGANDDIMSAR 1077
Query: 812 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 870
S+F VE+SE + I+ +SLV++DE+ RGT T G IA +++ L NIGCLG ST
Sbjct: 1078 STFMVELSETKKILDECGPKSLVILDELGRGTSTYDGHAIAYAVLHHLVSNIGCLGFFST 1137
Query: 871 HLHGI---FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 927
H + F +++ A E + T +KL DGIC +S A G+PE
Sbjct: 1138 HYQSLCVDFMHHRQVRLMQMAAAVDEKIRRVTF-LYKLEDGICPKSYGMNVASMAGLPEK 1196
Query: 928 IIQRAED 934
+I AE+
Sbjct: 1197 VIDAAEE 1203
Score = 49 (22.3 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 21/83 (25%), Positives = 34/83 (40%)
Query: 482 LLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICS-YDNIPSEFFEDME 540
++ D W D E L+ + + + + E Q+I S +D + EF E E
Sbjct: 736 VIRDTIWGFLHKLPDLERLISRVHAGRSKPADFVRVL-EGFQRINSAFDQLREEFMEVAE 794
Query: 541 STWKGRVKRIHIEPEIAEVEMAA 563
T G + I P + E E+ A
Sbjct: 795 GTLLGEI--IQSAPNMKE-ELEA 814
Score = 37 (18.1 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 206 EEVQGPTQARSRKS 219
EE+ PT+ +S KS
Sbjct: 145 EEIDSPTKKKSFKS 158
>WB|WBGene00003418 [details] [associations]
symbol:msh-2 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0032301
"MutSalpha complex" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032302 "MutSbeta complex" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IMP]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 KO:K08735 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 GeneTree:ENSGT00550000074867
OMA:HINERLD EMBL:FO080998 PIR:C87740 RefSeq:NP_491202.1
ProteinModelPortal:Q9TXR4 SMR:Q9TXR4 IntAct:Q9TXR4 MINT:MINT-227660
STRING:Q9TXR4 PaxDb:Q9TXR4 EnsemblMetazoa:H26D21.2.1
EnsemblMetazoa:H26D21.2.2 EnsemblMetazoa:H26D21.2.3 GeneID:171938
KEGG:cel:CELE_H26D21.2 UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2
InParanoid:Q9TXR4 NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 276 (102.2 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 89/291 (30%), Positives = 139/291 (47%)
Query: 650 EEALERYHEAGAKAKAKVLELLRGLSSELQTKINIL--VFASMLLVIGKALFAHVSEG-R 706
+E LE +H +A+ +V+ +L + E I + + A++ + + + FA S G
Sbjct: 533 DEFLE-FHLKYTRAEEEVISMLCKKAEEFIPLIPAMAQLIATLDVFVSLSTFAATSSGIY 591
Query: 707 RRKWVFP-ALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKS 765
R + P K +EL + G S F V +D L +LTG N GGKS
Sbjct: 592 TRPNLLPLGSKRLELKQCRHPVIEGNSEKPF--IPNDVV---LDKCRLIILTGANMGGKS 646
Query: 766 SLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV 825
+ LRS + LL G VP SA+I D I + + D + G S+F EM + +I+
Sbjct: 647 TYLRSAALSILLAQIGSFVPCSSATISVVDGIFTRVGASDKQSQGISTFMAEMLDCSAIL 706
Query: 826 TATTSRSLVLIDEICRGTETAKGTCIAGSIIET-LDNIGCLGIVSTHLHGIFSLPLKIKN 884
T S V+IDE+ RGT T G IA +I + L+ I CL I +TH H + L +
Sbjct: 707 QRATKNSFVVIDELGRGTSTFDGFGIASAIAQDILNRIQCLSIFATHFHEMGKLAEQ-PG 765
Query: 885 AAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 935
A MG + + + +K+ +G+ + S + AK G+ E +I +A L
Sbjct: 766 AVALQMGVQIENNEIHMLYKVFEGVAQCSFGLQVAKMVGIDENVINKAAQL 816
Score = 45 (20.9 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 2 YWLATRNAVVSFPKLRSLSSVFLRSPLRNYSPFRPST 38
Y L +V PK + ++S+F R + N +P +
Sbjct: 181 YILVNEGSVA--PKAKKIASMFTRMEVHNKQQLKPKS 215
Score = 42 (19.8 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 135 KSKFPREVLLCRVGDFYEAIGIDA 158
KSK P + + G+++ G DA
Sbjct: 18 KSKSPNTIAIFSRGEYFSVYGDDA 41
>UNIPROTKB|Q9TXR4 [details] [associations]
symbol:msh-2 "Protein MSH-2" species:6239 "Caenorhabditis
elegans" [GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IBA] [GO:0010224 "response to UV-B" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006302 "double-strand break
repair" evidence=IBA] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0042771 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GeneTree:ENSGT00550000074867 OMA:HINERLD EMBL:FO080998 PIR:C87740
RefSeq:NP_491202.1 ProteinModelPortal:Q9TXR4 SMR:Q9TXR4
IntAct:Q9TXR4 MINT:MINT-227660 STRING:Q9TXR4 PaxDb:Q9TXR4
EnsemblMetazoa:H26D21.2.1 EnsemblMetazoa:H26D21.2.2
EnsemblMetazoa:H26D21.2.3 GeneID:171938 KEGG:cel:CELE_H26D21.2
UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2 InParanoid:Q9TXR4
NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 276 (102.2 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 89/291 (30%), Positives = 139/291 (47%)
Query: 650 EEALERYHEAGAKAKAKVLELLRGLSSELQTKINIL--VFASMLLVIGKALFAHVSEG-R 706
+E LE +H +A+ +V+ +L + E I + + A++ + + + FA S G
Sbjct: 533 DEFLE-FHLKYTRAEEEVISMLCKKAEEFIPLIPAMAQLIATLDVFVSLSTFAATSSGIY 591
Query: 707 RRKWVFP-ALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKS 765
R + P K +EL + G S F V +D L +LTG N GGKS
Sbjct: 592 TRPNLLPLGSKRLELKQCRHPVIEGNSEKPF--IPNDVV---LDKCRLIILTGANMGGKS 646
Query: 766 SLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV 825
+ LRS + LL G VP SA+I D I + + D + G S+F EM + +I+
Sbjct: 647 TYLRSAALSILLAQIGSFVPCSSATISVVDGIFTRVGASDKQSQGISTFMAEMLDCSAIL 706
Query: 826 TATTSRSLVLIDEICRGTETAKGTCIAGSIIET-LDNIGCLGIVSTHLHGIFSLPLKIKN 884
T S V+IDE+ RGT T G IA +I + L+ I CL I +TH H + L +
Sbjct: 707 QRATKNSFVVIDELGRGTSTFDGFGIASAIAQDILNRIQCLSIFATHFHEMGKLAEQ-PG 765
Query: 885 AAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 935
A MG + + + +K+ +G+ + S + AK G+ E +I +A L
Sbjct: 766 AVALQMGVQIENNEIHMLYKVFEGVAQCSFGLQVAKMVGIDENVINKAAQL 816
Score = 45 (20.9 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 2 YWLATRNAVVSFPKLRSLSSVFLRSPLRNYSPFRPST 38
Y L +V PK + ++S+F R + N +P +
Sbjct: 181 YILVNEGSVA--PKAKKIASMFTRMEVHNKQQLKPKS 215
Score = 42 (19.8 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 135 KSKFPREVLLCRVGDFYEAIGIDA 158
KSK P + + G+++ G DA
Sbjct: 18 KSKSPNTIAIFSRGEYFSVYGDDA 41
>UNIPROTKB|F1PM37 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GO:GO:0032301 KO:K08735 OMA:WAISEHI GO:GO:0032302 CTD:4436
GeneTree:ENSGT00550000074867 EMBL:AAEX03007498 EMBL:AAEX03007499
EMBL:AAEX03007500 RefSeq:XP_538482.2 Ensembl:ENSCAFT00000004191
GeneID:494002 KEGG:cfa:494002 Uniprot:F1PM37
Length = 934
Score = 269 (99.8 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 90/311 (28%), Positives = 145/311 (46%)
Query: 632 VDSKGRKVGEEWFSTLKVEEALER--YHEAGAKAKAKVLELLRGLSSELQTKINILVFAS 689
+ G K ++L E + Y EA +++ + G +QT ++L A
Sbjct: 544 IQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVL--AQ 601
Query: 690 MLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFD---AAEGSAVHN 746
+ V+ FAHVS G +V P + + + G LK + + A + VH
Sbjct: 602 LDAVVS---FAHVSNGAPVPYVRPVILE-KGQGRITLKASRHACVEVQDEVAFIPNDVHF 657
Query: 747 TVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDS 806
D Q ++TGPN GGKS+ +R L+ G VP ESA + D I+ + + DS
Sbjct: 658 EKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDS 717
Query: 807 PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCL 865
G S+F EM E SI+ + T SL++IDE+ RGT T G +A +I E + IG
Sbjct: 718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAF 777
Query: 866 GIVSTHLHGIFSLPLKI---KNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 922
+ +TH H + +L +I N A+ TE + T+ +++ G+C +S A+
Sbjct: 778 CMFATHFHELTALANQIPTVNNLHVTALTTE--ETLTM-LYQVKKGVCDQSFGIHVAELA 834
Query: 923 GVPETIIQRAE 933
P +I+ A+
Sbjct: 835 NFPRHVIECAK 845
Score = 46 (21.3 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 529 DNIPSEFFEDMESTWKGRV-KRIH--IEPEIAEVEMAAEALSLAVTEDFLPIIS 579
D + ++D+ KG+ ++++ + PE+ E ++AA ALS + FL ++S
Sbjct: 231 DFFTKDIYQDLNRLLKGKKGEQVNSAVLPEM-ENQVAASALSAVIK--FLELLS 281
>TAIR|locus:1005716529 [details] [associations]
symbol:MSH7 "AT3G24495" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP
catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
[GO:0006260 "DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0007067 "mitosis" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0034968 "histone
lysine methylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009411 GO:GO:0003684 EMBL:AB020746
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR015536 PANTHER:PTHR11361:SF31 EMBL:AJ007792
EMBL:AF193018 EMBL:AF009657 IPI:IPI00538811 RefSeq:NP_850630.1
UniGene:At.6244 ProteinModelPortal:Q9SMV7 SMR:Q9SMV7 STRING:Q9SMV7
PaxDb:Q9SMV7 PRIDE:Q9SMV7 EnsemblPlants:AT3G24495.1 GeneID:822040
KEGG:ath:AT3G24495 GeneFarm:5083 TAIR:At3g24495
HOGENOM:HOG000030287 InParanoid:Q9SMV7 OMA:ELDEWRM PhylomeDB:Q9SMV7
ProtClustDB:CLSN2680110 Genevestigator:Q9SMV7 GermOnline:AT3G24495
Uniprot:Q9SMV7
Length = 1109
Score = 258 (95.9 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 67/198 (33%), Positives = 105/198 (53%)
Query: 747 TVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDS 806
++ +SL LLTGPN GGKS+LLR+ C A + G VP ES I D I + + D
Sbjct: 843 SIHPRSL-LLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCESCEISLVDTIFTRLGASDR 901
Query: 807 PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCL 865
G+S+F VE +E S++ T SLV++DE+ RGT T G IA S+ L + + C
Sbjct: 902 IMTGESTFLVECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHLVEKVQCR 961
Query: 866 GIVSTHLHGI---FSLPLKIKN----AAYKAMGTEY----LDGQTVPTWKLVDGICRESL 914
+ +TH H + F+ ++ + A+K+ ++Y D V ++L +G C ES
Sbjct: 962 MLFATHYHPLTKEFASHPRVTSKHMACAFKSR-SDYQPRGCDQDLVFLYRLTEGACPESY 1020
Query: 915 AFETAKREGVPETIIQRA 932
+ A G+P +++ A
Sbjct: 1021 GLQVALMAGIPNQVVETA 1038
Score = 66 (28.3 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 25/92 (27%), Positives = 44/92 (47%)
Query: 135 KSKFPREVLLCRVGDFYEAIGIDACI----LVEYAGLNPFGGLRPESIPKAGCPVVNLRQ 190
KS++ VL +VG FYE +DA + L ++ G R I ++G + +
Sbjct: 278 KSEYMDIVLFFKVGKFYELYELDAELGHKELDWKMTMSGVGKCRQVGISESG-----IDE 332
Query: 191 TLDDLTRNGYSVCIVEEVQGPTQARSRKSRFI 222
+ L GY V +E+++ QA++R + I
Sbjct: 333 AVQKLLARGYKVGRIEQLETSDQAKARGANTI 364
Score = 42 (19.8 bits), Expect = 8.0e-17, Sum P(2) = 8.0e-17
Identities = 33/150 (22%), Positives = 69/150 (46%)
Query: 548 KRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFK 607
K +HI P++ + A++ +V +++ I+ K G E LY + E + K
Sbjct: 255 KTLHIPPDVFKKMSASQKQYWSVKSEYMDIVLFFKV------GKFYE-LYELDAE-LGHK 306
Query: 608 GKKFRPTVWASTPGE-EQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAK 666
++ T+ S G+ Q+ + +D +K+ + ++E+ LE +A A+
Sbjct: 307 ELDWKMTM--SGVGKCRQVGISESGIDEAVQKLLARGYKVGRIEQ-LETSDQAKARGANT 363
Query: 667 VL--ELLRGLSSELQTKINILVFASMLLVI 694
++ +L++ L+ ++ NI A LL I
Sbjct: 364 IIPRKLVQVLTPSTASEGNIGPDAVHLLAI 393
Score = 40 (19.1 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 669 ELLRG-LSSELQTKINILVFASMLL-----VIGKALFAHVSE-GRR--RKWVFPALKDIE 719
++ RG L + QT +N+ +F + + K L VS G+R R W+ LKD+E
Sbjct: 547 QVYRGCLRIDGQTMVNLEIFNNSCDGGPSGTLYKYLDNCVSPTGKRLLRNWICHPLKDVE 606
>POMBASE|SPAC8F11.03 [details] [associations]
symbol:msh3 "MutS protein homolog 3" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0007534 "gene conversion at
mating-type locus" evidence=IMP] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0061500 "gene conversion at
mating-type locus, termination of copy-synthesis" evidence=IMP]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0000403 "Y-form DNA
binding" evidence=ISO] [GO:0000404 "loop DNA binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPAC8F11.03
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006281
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0032135 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0000406 GO:GO:0007534 OrthoDB:EOG42NN7M EMBL:X61306
PIR:S22569 ProteinModelPortal:P26359 STRING:P26359 PRIDE:P26359
NextBio:20804407 Uniprot:P26359
Length = 993
Score = 261 (96.9 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 64/202 (31%), Positives = 111/202 (54%)
Query: 744 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 803
+H + D L+TGPN GGKSS ++ + ++++ G VPA+SA +P FD+I++ M S
Sbjct: 745 IHLSSDGVRCLLITGPNMGGKSSFVKQLALSAIMAQSGCFVPAKSALLPIFDSILIRMGS 804
Query: 804 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-I 862
D+ + S+F VEM E + +++ T +S+V+IDE+ RGT T G I+ +++ L+ I
Sbjct: 805 SDNLSVNMSTFMVEMLETKEVLSKATEKSMVIIDELGRGTSTIDGEAISYAVLHYLNQYI 864
Query: 863 GCLGIVSTHLH--GI----FSLPLKIKNAAYKAMGTEYLDG--QTVP-TWKLVDGICRES 913
+ TH GI F L+ + Y ++ Q++ +KLV G+ +S
Sbjct: 865 KSYLLFVTHFPSLGILERRFEGQLRCFHMGYLKSKEDFETSVSQSISFLYKLVPGVASKS 924
Query: 914 LAFETAKREGVPETIIQRAEDL 935
A+ G+P +I+ RA ++
Sbjct: 925 YGLNVARMAGIPFSILSRATEI 946
>POMBASE|SPBC19G7.01c [details] [associations]
symbol:msh2 "MutS protein homolog 2" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IGI;IMP] [GO:0007534 "gene
conversion at mating-type locus" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IMP] [GO:0000404
"loop DNA binding" evidence=ISO] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0032138 "single base insertion
or deletion binding" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPBC19G7.01c
GO:GO:0005829 GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0006298 GO:GO:0030983 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032301 HOGENOM:HOG000196498 KO:K08735
GO:GO:0032302 GO:GO:0000406 OrthoDB:EOG4S7NZ5 EMBL:AJ006948
PIR:T43699 RefSeq:XP_001713136.1 ProteinModelPortal:O74773
STRING:O74773 EnsemblFungi:SPBC19G7.01c.1 GeneID:2540695
KEGG:spo:SPBC19G7.01c OMA:HINERLD NextBio:20801818 GO:GO:0007534
Uniprot:O74773
Length = 982
Score = 245 (91.3 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 62/186 (33%), Positives = 93/186 (50%)
Query: 753 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 812
L ++TGPN GGKS+ +R + +++ G VP E A + DAI+ + + DS G S
Sbjct: 716 LLIITGPNMGGKSTYIRQVGVITVMAQIGCPVPCEVADLDIIDAILARVGASDSQLKGIS 775
Query: 813 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 871
+F EM E +I+ A T RSL++IDE+ RGT T G +A +I E + IGC + +TH
Sbjct: 776 TFMAEMLETATILRAATPRSLIIIDELGRGTSTTDGFGLAWAITEHIVTQIGCFCLFATH 835
Query: 872 LHGIFSLPLKI---KNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETI 928
H + L +I KN A + + + +G S AK P I
Sbjct: 836 YHEMTKLSEEITTVKNLHVTAYVGDSESKDVALLYNVCEGASDRSFGIHVAKLAHFPPKI 895
Query: 929 IQRAED 934
I+ A +
Sbjct: 896 IEMASN 901
Score = 66 (28.3 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 118 KNGSL-KEGTLNWEMLQFKSKFPREVLLCRV---GDFYEAIGIDACILVEYA 165
+N S+ E T M F K P++ RV G+FY AIG DA + + A
Sbjct: 4 RNASIANERTDEARMFNFYEKMPKDTNTVRVFDRGEFYVAIGEDASFVAQNA 55
Score = 48 (22.0 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 623 EQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLEL--LRGLSS---E 677
+++ +L+ ++ + ++VG + + + LE++H G + E LRG SS E
Sbjct: 499 QRLDELQHSIFEEHKRVGSDLHQDTEKKLHLEQHHLYGWCLRLTRTEAGCLRGRSSHYTE 558
Query: 678 LQTKINILVFASMLL 692
L T+ N + F + L
Sbjct: 559 LSTQKNGVYFTTKRL 573
>UNIPROTKB|Q7S4J6 [details] [associations]
symbol:NCU08135 "DNA mismatch repair protein msh6"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
PIRSF:PIRSF037677 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
EMBL:AABX02000052 RefSeq:XP_959678.2 UniGene:Ncr.20761
ProteinModelPortal:Q7S4J6 STRING:Q7S4J6
EnsemblFungi:EFNCRT00000008326 GeneID:3875816 KEGG:ncr:NCU08135
Uniprot:Q7S4J6
Length = 1237
Score = 266 (98.7 bits), Expect = 4.7e-18, Sum P(3) = 4.7e-18
Identities = 63/189 (33%), Positives = 105/189 (55%)
Query: 749 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 808
D ++ LLTG N GKS++LR C A ++ G VPA SA + D IM + + D+
Sbjct: 988 DEANINLLTGANAAGKSTILRMSCIAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIF 1047
Query: 809 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 867
+S+F VE+SE + I++ T RSLV++DE+ RGT + G +A +++ + +IGC+G
Sbjct: 1048 AAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVASHIGCVGF 1107
Query: 868 VSTHLHGI---FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 924
+TH H + F +I+ A + + + + +KL DG+ S A G+
Sbjct: 1108 FATHYHSLATEFENHPEIR-ARRMQIAVDEENKRITFLYKLEDGVAEGSFGMHCAAMCGI 1166
Query: 925 PETIIQRAE 933
P+ +I+R+E
Sbjct: 1167 PDKVIRRSE 1175
Score = 50 (22.7 bits), Expect = 4.7e-18, Sum P(3) = 4.7e-18
Identities = 25/99 (25%), Positives = 43/99 (43%)
Query: 581 IKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVD--SKGRK 638
I A TA GGP+G + + F + FR V +++ + AVD +
Sbjct: 655 IFANTAN-GGPEGTLFHLLNRCITPFGKRLFRQWVCHPLCNIQKLNERLDAVDMLNDDHS 713
Query: 639 VGEEWFSTLK----VEEALERYHEAGAKAKAKVLELLRG 673
+ E++ S + +E + R H AGA +++L G
Sbjct: 714 LREQFSSQMSKMPDLERLISRIH-AGACRPEDFVKVLEG 751
Score = 45 (20.9 bits), Expect = 4.7e-18, Sum P(3) = 4.7e-18
Identities = 20/84 (23%), Positives = 33/84 (39%)
Query: 126 TLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPV 185
T WE+ K V+ + G FYE DA I + L + + G P
Sbjct: 355 TQYWEI---KKNLWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDRVNMRMV---GVPE 408
Query: 186 VNLRQTLDDLTRNGYSVCIVEEVQ 209
+L ++ GY V V++++
Sbjct: 409 SSLDMWVNQFVAKGYKVARVDQME 432
Score = 39 (18.8 bits), Expect = 6.3e-17, Sum P(3) = 6.3e-17
Identities = 17/66 (25%), Positives = 28/66 (42%)
Query: 617 ASTPG-EEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLS 675
AS P +E + K A D K + + +EE +R + K ++ ELL
Sbjct: 777 ASMPDLKEPLGYWKTAFDRKRARDDKLLIPEPGIEEDFDRSQAELDRIKGELQELLERQK 836
Query: 676 SELQTK 681
+ L+ K
Sbjct: 837 TALRCK 842
>UNIPROTKB|F1NV33 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00821163 Ensembl:ENSGALT00000014573 ArrayExpress:F1NV33
Uniprot:F1NV33
Length = 861
Score = 256 (95.2 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 76/287 (26%), Positives = 133/287 (46%)
Query: 654 ERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFP 713
E Y EA +++ + G + +QT +++ A + ++ FAHVS G +V P
Sbjct: 496 EEYEEAQDAIVKEIINIASGYAEPIQTMNDVI--AQLDAIVS---FAHVSNGAPVPYVRP 550
Query: 714 ALKDIELDGANCLKMNGLSPYWFDAAEGSA-VHNTVDMQS---LF-LLTGPNGGGKSSLL 768
+ + G + + G + + A + N V + +F ++TGPN GGKS+ +
Sbjct: 551 VILE---KGQGRIVLKGARHPCIEVQDEVAFIPNDVTFEKGKQMFHIITGPNMGGKSTYI 607
Query: 769 RSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT 828
R L+ G VP SA I D I+ + + DS G S+F EM E SI+
Sbjct: 608 RQTGVIVLMAQIGCFVPCNSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTA 667
Query: 829 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC-LGIVSTHLHGIFSLPLKIKNAAY 887
+ SL++IDE+ RGT T G +A +I E + + C + +TH H + +L ++
Sbjct: 668 SENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTVNN 727
Query: 888 KAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 934
+ D +++ G+C +S A+ P+ +I+ A +
Sbjct: 728 LHVTALTSDDTLTMLYRVKAGVCDQSFGIHVAELAAFPKHVIESARE 774
>UNIPROTKB|F1NFH4 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 OMA:WAISEHI GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00601005 Ensembl:ENSGALT00000039639 ArrayExpress:F1NFH4
Uniprot:F1NFH4
Length = 866
Score = 256 (95.2 bits), Expect = 5.9e-18, P = 5.9e-18
Identities = 76/287 (26%), Positives = 133/287 (46%)
Query: 654 ERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFP 713
E Y EA +++ + G + +QT +++ A + ++ FAHVS G +V P
Sbjct: 501 EEYEEAQDAIVKEIINIASGYAEPIQTMNDVI--AQLDAIVS---FAHVSNGAPVPYVRP 555
Query: 714 ALKDIELDGANCLKMNGLSPYWFDAAEGSA-VHNTVDMQS---LF-LLTGPNGGGKSSLL 768
+ + G + + G + + A + N V + +F ++TGPN GGKS+ +
Sbjct: 556 VILE---KGQGRIVLKGARHPCIEVQDEVAFIPNDVTFEKGKQMFHIITGPNMGGKSTYI 612
Query: 769 RSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT 828
R L+ G VP SA I D I+ + + DS G S+F EM E SI+
Sbjct: 613 RQTGVIVLMAQIGCFVPCNSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTA 672
Query: 829 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC-LGIVSTHLHGIFSLPLKIKNAAY 887
+ SL++IDE+ RGT T G +A +I E + + C + +TH H + +L ++
Sbjct: 673 SENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTVNN 732
Query: 888 KAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 934
+ D +++ G+C +S A+ P+ +I+ A +
Sbjct: 733 LHVTALTSDDTLTMLYRVKAGVCDQSFGIHVAELAAFPKHVIESARE 779
>UNIPROTKB|E9PHA6 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 EMBL:AC079775
SUPFAM:SSF48334 GO:GO:0032301 GO:GO:0032302 EMBL:AC138655
HGNC:HGNC:7325 ChiTaRS:MSH2 IPI:IPI00893933
ProteinModelPortal:E9PHA6 SMR:E9PHA6 Ensembl:ENST00000406134
UCSC:uc002rvz.3 ArrayExpress:E9PHA6 Bgee:E9PHA6 Uniprot:E9PHA6
Length = 921
Score = 269 (99.8 bits), Expect = 6.4e-18, Sum P(3) = 6.4e-18
Identities = 91/312 (29%), Positives = 148/312 (47%)
Query: 632 VDSKGRKVGEEWFSTLKVEEALER--YHEAGAKAKAKVLELLRGLSSELQTKINILVFAS 689
+ G K ++L E + Y EA +++ + G +QT ++L A
Sbjct: 544 IQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVL--AQ 601
Query: 690 MLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTV- 748
+ V+ FAHVS G +V PA+ + + G LK + + E + + N V
Sbjct: 602 LDAVVS---FAHVSNGAPVPYVRPAILE-KGQGRIILKASRHACVEVQD-EIAFIPNDVY 656
Query: 749 ---DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 805
D Q ++TGPN GGKS+ +R L+ G VP ESA + D I+ + + D
Sbjct: 657 FEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGD 716
Query: 806 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 864
S G S+F EM E SI+ + T SL++IDE+ RGT T G +A +I E + IG
Sbjct: 717 SQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGA 776
Query: 865 LGIVSTHLHGIFSLPLKI---KNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 921
+ +TH H + +L +I N A+ TE + T+ +++ G+C +S A+
Sbjct: 777 FCMFATHFHELTALANQIPTVNNLHVTALTTE--ETLTM-LYQVKKGVCDQSFGIHVAEL 833
Query: 922 EGVPETIIQRAE 933
P+ +I+ A+
Sbjct: 834 ANFPKHVIECAK 845
Score = 48 (22.0 bits), Expect = 6.4e-18, Sum P(3) = 6.4e-18
Identities = 27/117 (23%), Positives = 49/117 (41%)
Query: 148 GDFYEAIGIDACI----LVEYAGLNPF-GGLRPESIPKAGCPVVNLRQTLDDLTR-NGYS 201
GDFY A G DA + + + G+ + G +++ +N + DL Y
Sbjct: 40 GDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYR 99
Query: 202 VCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSA 258
V + + G +A +++ A PG+ F + ++ D + V+GV SA
Sbjct: 100 VEVYKNRAG-NKASKENDWYLAYKASPGNLSQFEDILFGNN-DMSASIGVVGVKMSA 154
Score = 37 (18.1 bits), Expect = 6.4e-18, Sum P(3) = 6.4e-18
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 534 EFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIIS 579
+ ++D+ KG+ + E+E SL+ FL ++S
Sbjct: 236 DIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLS 281
>UNIPROTKB|P43246 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0019237 "centromeric DNA binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=ISS;IBA] [GO:0010224
"response to UV-B" evidence=ISS;IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0042771
"intrinsic apoptotic signaling pathway in response to DNA damage by
p53 class mediator" evidence=IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0019901 "protein kinase binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=IDA] [GO:0006301
"postreplication repair" evidence=IDA] [GO:0008022 "protein
C-terminus binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA;IMP] [GO:0032405
"MutLalpha complex binding" evidence=IDA] [GO:0032301 "MutSalpha
complex" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0032302 "MutSbeta complex" evidence=IDA]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032143 "single thymine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA] [GO:0000400
"four-way junction DNA binding" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=ISS] [GO:0008584 "male gonad
development" evidence=ISS] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISS] [GO:0030183 "B cell
differentiation" evidence=ISS] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=ISS;IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0042803 GO:GO:0042771 GO:GO:0042493 GO:GO:0003684
GO:GO:0001701 GO:GO:0043524 GO:GO:0007050 GO:GO:0007283
GO:GO:0006119 GO:GO:0008584 GO:GO:0019237 GO:GO:0014070
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 Orphanet:144
GO:GO:0006301 GO:GO:0031573 MIM:608089 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 EMBL:AC079775 eggNOG:COG0249 SUPFAM:SSF48334
MIM:158320 Orphanet:587 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0051096 EMBL:U03911 EMBL:U04045 EMBL:U41221
EMBL:U41206 EMBL:U41207 EMBL:U41208 EMBL:U41210 EMBL:U41211
EMBL:U41212 EMBL:U41213 EMBL:U41214 EMBL:U41215 EMBL:U41216
EMBL:U41217 EMBL:U41218 EMBL:U41219 EMBL:U41220 EMBL:L47583
EMBL:L47582 EMBL:L47581 EMBL:AY601851 EMBL:AK304496 EMBL:BX649122
EMBL:AC138655 EMBL:BC021566 EMBL:AF066081 IPI:IPI00017303
IPI:IPI01014700 PIR:I64819 RefSeq:NP_000242.1 UniGene:Hs.597656
PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F PDB:3THW PDB:3THX
PDB:3THY PDB:3THZ PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E
PDBsum:2O8F PDBsum:3THW PDBsum:3THX PDBsum:3THY PDBsum:3THZ
ProteinModelPortal:P43246 SMR:P43246 DIP:DIP-35054N IntAct:P43246
MINT:MINT-84789 STRING:P43246 PhosphoSite:P43246 DMDM:1171032
PaxDb:P43246 PeptideAtlas:P43246 PRIDE:P43246 DNASU:4436
Ensembl:ENST00000233146 Ensembl:ENST00000543555 GeneID:4436
KEGG:hsa:4436 UCSC:uc002rvy.1 GeneCards:GC02P047630 HGNC:HGNC:7325
HPA:CAB009572 MIM:120435 MIM:609309 neXtProt:NX_P43246
PharmGKB:PA31133 InParanoid:P43246 PhylomeDB:P43246 ChiTaRS:MSH2
EvolutionaryTrace:P43246 GenomeRNAi:4436 NextBio:17289
ArrayExpress:P43246 Bgee:P43246 CleanEx:HS_MSH2
Genevestigator:P43246 GermOnline:ENSG00000095002 Uniprot:P43246
Length = 934
Score = 269 (99.8 bits), Expect = 6.9e-18, Sum P(3) = 6.9e-18
Identities = 91/312 (29%), Positives = 148/312 (47%)
Query: 632 VDSKGRKVGEEWFSTLKVEEALER--YHEAGAKAKAKVLELLRGLSSELQTKINILVFAS 689
+ G K ++L E + Y EA +++ + G +QT ++L A
Sbjct: 544 IQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVL--AQ 601
Query: 690 MLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTV- 748
+ V+ FAHVS G +V PA+ + + G LK + + E + + N V
Sbjct: 602 LDAVVS---FAHVSNGAPVPYVRPAILE-KGQGRIILKASRHACVEVQD-EIAFIPNDVY 656
Query: 749 ---DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 805
D Q ++TGPN GGKS+ +R L+ G VP ESA + D I+ + + D
Sbjct: 657 FEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGD 716
Query: 806 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGC 864
S G S+F EM E SI+ + T SL++IDE+ RGT T G +A +I E + IG
Sbjct: 717 SQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGA 776
Query: 865 LGIVSTHLHGIFSLPLKI---KNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKR 921
+ +TH H + +L +I N A+ TE + T+ +++ G+C +S A+
Sbjct: 777 FCMFATHFHELTALANQIPTVNNLHVTALTTE--ETLTM-LYQVKKGVCDQSFGIHVAEL 833
Query: 922 EGVPETIIQRAE 933
P+ +I+ A+
Sbjct: 834 ANFPKHVIECAK 845
Score = 48 (22.0 bits), Expect = 6.9e-18, Sum P(3) = 6.9e-18
Identities = 27/117 (23%), Positives = 49/117 (41%)
Query: 148 GDFYEAIGIDACI----LVEYAGLNPF-GGLRPESIPKAGCPVVNLRQTLDDLTR-NGYS 201
GDFY A G DA + + + G+ + G +++ +N + DL Y
Sbjct: 40 GDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQYR 99
Query: 202 VCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSA 258
V + + G +A +++ A PG+ F + ++ D + V+GV SA
Sbjct: 100 VEVYKNRAG-NKASKENDWYLAYKASPGNLSQFEDILFGNN-DMSASIGVVGVKMSA 154
Score = 37 (18.1 bits), Expect = 6.9e-18, Sum P(3) = 6.9e-18
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 534 EFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIIS 579
+ ++D+ KG+ + E+E SL+ FL ++S
Sbjct: 236 DIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLS 281
>UNIPROTKB|G4NEZ2 [details] [associations]
symbol:MGG_00704 "DNA mismatch repair protein msh6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CM001235
GO:GO:0006298 GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR017261 PIRSF:PIRSF037677 RefSeq:XP_003718302.1
ProteinModelPortal:G4NEZ2 EnsemblFungi:MGG_00704T0 GeneID:2675105
KEGG:mgr:MGG_00704 Uniprot:G4NEZ2
Length = 1218
Score = 263 (97.6 bits), Expect = 7.2e-18, Sum P(2) = 7.2e-18
Identities = 66/191 (34%), Positives = 105/191 (54%)
Query: 749 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 808
D ++ LLTG N GKS++LR C A ++ G VPA SA + D IM + + D+
Sbjct: 969 DDANINLLTGANAAGKSTVLRMSCIAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIF 1028
Query: 809 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 867
+S+F VE+SE + I++ T RSLV++DE+ RGT + G +A +++ + +IGC+G
Sbjct: 1029 AAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVASHIGCVGF 1088
Query: 868 VSTHLHGIFSLPLKIKN---AAYKAMGTEYLDGQTVPT--WKLVDGICRESLAFETAKRE 922
+TH H SL + +N K M + D + T ++L DG+ S A
Sbjct: 1089 FATHYH---SLATEFENHPEIRAKRMQIQVDDAKRRVTFLYRLEDGVAEGSFGMHCAAMC 1145
Query: 923 GVPETIIQRAE 933
G+ + +I+RAE
Sbjct: 1146 GISDRVIERAE 1156
Score = 48 (22.0 bits), Expect = 7.2e-18, Sum P(2) = 7.2e-18
Identities = 20/81 (24%), Positives = 33/81 (40%)
Query: 129 WEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNL 188
WE+ K K V+ + G FYE DA I + L + + G P +L
Sbjct: 335 WEI---KQKLWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDRVNMRMV---GVPEASL 388
Query: 189 RQTLDDLTRNGYSVCIVEEVQ 209
++ GY V V++++
Sbjct: 389 DIWVNQFVAKGYKVARVDQME 409
>SGD|S000005450 [details] [associations]
symbol:MSH2 "Protein that forms heterodimers with Msh3p and
Msh6p that bind to DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA;IDA] [GO:0006298 "mismatch
repair" evidence=IEA;IMP] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IPI]
[GO:0032302 "MutSbeta complex" evidence=IEA;IPI] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0000735 "removal of nonhomologous ends"
evidence=IGI;IMP] [GO:0000710 "meiotic mismatch repair"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IGI] [GO:0006311 "meiotic gene conversion" evidence=IMP]
[GO:0032135 "DNA insertion or deletion binding" evidence=IDA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IMP;IDA] [GO:0006310 "DNA recombination" evidence=IMP]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
SGD:S000005450 GO:GO:0005524 EMBL:BK006948 GO:GO:0003684
GO:GO:0030466 EMBL:X83121 GO:GO:0030983 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0006301 GO:GO:0008094 GO:GO:0036297
GO:GO:0006311 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0000710 GO:GO:0032301 HOGENOM:HOG000196498
KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GeneTree:ENSGT00550000074867 OrthoDB:EOG4S7NZ5 GO:GO:0000735
EMBL:M84170 EMBL:Z74832 PIR:S57379 RefSeq:NP_014551.1
ProteinModelPortal:P25847 SMR:P25847 DIP:DIP-2415N IntAct:P25847
MINT:MINT-631153 STRING:P25847 PaxDb:P25847 PeptideAtlas:P25847
EnsemblFungi:YOL090W GeneID:854063 KEGG:sce:YOL090W CYGD:YOL090w
NextBio:975668 Genevestigator:P25847 GermOnline:YOL090W
Uniprot:P25847
Length = 964
Score = 264 (98.0 bits), Expect = 8.5e-18, Sum P(3) = 8.5e-18
Identities = 80/266 (30%), Positives = 129/266 (48%)
Query: 686 VFASMLLVIGK----ALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEG 741
VF + LV+ A FAH S ++ P L ++ + L ++ P +
Sbjct: 609 VFEKLSLVLAHLDVIASFAHTSSYAPIPYIRPKLHPMDSERRTHL-ISSRHPVLEMQDDI 667
Query: 742 SAVHNTVDMQS----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 797
S + N V ++S ++TGPN GGKS+ +R + SL+ G VP E A I DAI
Sbjct: 668 SFISNDVTLESGKGDFLIITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIAIVDAI 727
Query: 798 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 857
+ + + DS G S+F VE+ E SI+ + SL+++DE+ RGT T G +A +I E
Sbjct: 728 LCRVGAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLAWAIAE 787
Query: 858 TL-DNIGCLGIVSTHLHGIFSLPLKIKNA------AY--KAMGTEYLDGQTVPT-WKLVD 907
+ IGC + +TH H + L K+ N A+ K + + D + + +K+
Sbjct: 788 HIASKIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLLYKVEP 847
Query: 908 GICRESLAFETAKREGVPETIIQRAE 933
GI +S A+ PE I++ A+
Sbjct: 848 GISDQSFGIHVAEVVQFPEKIVKMAK 873
Score = 48 (22.0 bits), Expect = 8.5e-18, Sum P(3) = 8.5e-18
Identities = 26/120 (21%), Positives = 55/120 (45%)
Query: 442 CLVKLLELREANHIEFCRIKNVLDE---ILHMYGNSELNEILELLMDPT-WVATGLKIDF 497
CLV+ L ++ E ++ NV+D ++ + NSE +E ++ +D T + L +
Sbjct: 195 CLVQDLTSNSNSNAEMQKVINVIDRCGCVVTLLKNSEFSE-KDVELDLTKLLGDDLALSL 253
Query: 498 ETLVEECRLASVR--IGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPE 555
+ + + IG + L E DQ + Y+ + + E M+ +K +++ P+
Sbjct: 254 PQKYSKLSMGACNALIG-YLQLLSEQDQ-VGKYELVEHKLKEFMKLD-ASAIKALNLFPQ 310
Score = 47 (21.6 bits), Expect = 1.1e-17, Sum P(3) = 1.1e-17
Identities = 16/71 (22%), Positives = 35/71 (49%)
Query: 472 GNSE-LNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDN 530
GN E +NE++ + +D + + LK+ + + C IG ++ + K+ D
Sbjct: 122 GNIEQVNELMNMNIDSSIIIASLKVQWNSQDGNCI-----IG--VAFIDTTAYKVGMLDI 174
Query: 531 IPSEFFEDMES 541
+ +E + ++ES
Sbjct: 175 VDNEVYSNLES 185
Score = 42 (19.8 bits), Expect = 8.5e-18, Sum P(3) = 8.5e-18
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 140 REVLLCRVGDFYEAIGIDACILVE 163
+ + L GD+Y IG DA + +
Sbjct: 32 KTIRLVDKGDYYTVIGSDAIFVAD 55
>RGD|620786 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=IEA;ISO] [GO:0000400
"four-way junction DNA binding" evidence=IEA;ISO;IBA] [GO:0000403
"Y-form DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0002204 "somatic recombination of
immunoglobulin genes involved in immune response" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO;ISS] [GO:0003684 "damaged
DNA binding" evidence=ISO;IBA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA;ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006119 "oxidative phosphorylation" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0006301 "postreplication repair"
evidence=ISO;ISS;IBA] [GO:0006302 "double-strand break repair"
evidence=IEA;ISO;IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0006915 "apoptotic process" evidence=IEA;ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0007050 "cell cycle arrest" evidence=IEA;ISO] [GO:0007281 "germ
cell development" evidence=IEA;ISO] [GO:0007283 "spermatogenesis"
evidence=IEP] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IEA;ISO] [GO:0008584 "male gonad development"
evidence=IEA;ISO] [GO:0010165 "response to X-ray"
evidence=IEA;ISO;IBA] [GO:0010224 "response to UV-B"
evidence=IEA;ISO;IBA] [GO:0014070 "response to organic cyclic
compound" evidence=IEP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IEA;ISO;IBA] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=IEA;ISO] [GO:0019237
"centromeric DNA binding" evidence=IEA;ISO] [GO:0019724 "B cell
mediated immunity" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding"
evidence=IEA;ISO] [GO:0030183 "B cell differentiation"
evidence=IEA;ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IEA;ISO;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA;ISO;IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032142 "single guanine
insertion binding" evidence=IEA;ISO] [GO:0032143 "single thymine
insertion binding" evidence=IEA;ISO] [GO:0032181 "dinucleotide
repeat insertion binding" evidence=IEA;ISO] [GO:0032301 "MutSalpha
complex" evidence=IEA;ISO;IBA] [GO:0032302 "MutSbeta complex"
evidence=IEA;ISO;IBA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA;ISO] [GO:0032405 "MutLalpha complex binding"
evidence=IEA;ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IBA] [GO:0042803
"protein homodimerization activity" evidence=IEA;ISO] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO]
[GO:0043200 "response to amino acid stimulus" evidence=IEP]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA;ISO] [GO:0043531 "ADP binding" evidence=IEA;ISO]
[GO:0043570 "maintenance of DNA repeat elements"
evidence=IEA;ISO;IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IEA;ISO;IBA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA;ISO] [GO:0051096
"positive regulation of helicase activity" evidence=IEA;ISO]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
RGD:620786 GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 CTD:4436
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:X93591
IPI:IPI00211849 PIR:JC6184 RefSeq:NP_112320.1 UniGene:Rn.3174
ProteinModelPortal:P54275 SMR:P54275 STRING:P54275
PhosphoSite:P54275 PRIDE:P54275 GeneID:81709 KEGG:rno:81709
UCSC:RGD:620786 InParanoid:P54275 NextBio:615336
ArrayExpress:P54275 Genevestigator:P54275
GermOnline:ENSRNOG00000015796 Uniprot:P54275
Length = 933
Score = 273 (101.2 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 91/311 (29%), Positives = 145/311 (46%)
Query: 632 VDSKGRKVGEEWFSTLKVEEALER--YHEAGAKAKAKVLELLRGLSSELQTKINILVFAS 689
+ G K S+L E + Y EA +++ + G +QT ++L A
Sbjct: 544 IQKNGVKFTNSELSSLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQTVNDVL--AH 601
Query: 690 MLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMN--GLSPYWFDAAE-GSAVHN 746
+ V+ FAHVS +V P + + + G +K + D A + VH
Sbjct: 602 LDAVVS---FAHVSNAAPVPYVRPVILE-KGKGRIIVKASRHACVEVQHDVAFIPNDVHF 657
Query: 747 TVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDS 806
D Q ++TGPN GGKS+ +R L+ G VP ESA + D I+ + + DS
Sbjct: 658 EKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDS 717
Query: 807 PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCL 865
G S+F EM E SI+ + T SL++IDE+ RGT T G +A +I E + NIG
Sbjct: 718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATNIGAF 777
Query: 866 GIVSTHLHGIFSLPLKI---KNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 922
+ +TH H + +L +I N A+ TE + T+ +++ G+C +S A+
Sbjct: 778 CMFATHFHELTALASQIPTVNNLHVTALTTE--ETLTM-LYQVKTGVCDQSFGIHVAELA 834
Query: 923 GVPETIIQRAE 933
P +I+ A+
Sbjct: 835 NFPRHVIECAK 845
Score = 40 (19.1 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 534 EFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIIS 579
+ ++D+ KGR + E+E SL+ FL ++S
Sbjct: 236 DIYQDLNRLLKGRKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLS 281
Score = 39 (18.8 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 148 GDFYEAIGIDACI 160
GDFY A G DA +
Sbjct: 40 GDFYTAHGEDALL 52
>TAIR|locus:2131829 [details] [associations]
symbol:MSH3 "AT4G25540" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IBA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006200 "ATP catabolic process" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030983 "mismatched
DNA binding" evidence=IDA] [GO:0007126 "meiosis" evidence=RCA]
[GO:0007129 "synapsis" evidence=RCA] [GO:0009410 "response to
xenobiotic stimulus" evidence=RCA] [GO:0048522 "positive regulation
of cellular process" evidence=RCA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003684 EMBL:AL022197 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032300 GO:GO:0000404
EMBL:AJ007791 IPI:IPI00524241 PIR:T05793 PIR:T51613
RefSeq:NP_194284.2 UniGene:At.506 ProteinModelPortal:O65607
SMR:O65607 STRING:O65607 PaxDb:O65607 PRIDE:O65607
EnsemblPlants:AT4G25540.1 GeneID:828659 KEGG:ath:AT4G25540
TAIR:At4g25540 HOGENOM:HOG000029776 InParanoid:O65607 KO:K08736
OMA:KRTKSIY PhylomeDB:O65607 ProtClustDB:CLSN2680081
Genevestigator:O65607 GermOnline:AT4G25540 Uniprot:O65607
Length = 1081
Score = 234 (87.4 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 61/188 (32%), Positives = 95/188 (50%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GGKS +R + S++ G VPA A + D + M + DS G+S+F
Sbjct: 814 IITGPNMGGKSCYIRQVALISIMAQVGSFVPASFAKLHVLDGVFTRMGASDSIQHGRSTF 873
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE-TLDNIGCLGIVSTHLH 873
E+SE I+ +SRSLV++DE+ RGT T G IA + ++ L CL + TH
Sbjct: 874 LEELSEASHIIRTCSSRSLVILDELGRGTSTHDGVAIAYATLQHLLAEKRCLVLFVTHYP 933
Query: 874 GIFSL----PLKIK--NAAYKAMGTE---YLDGQTVPTWKLVDGICRESLAFETAKREGV 924
I + P + + +Y + + Y +KLV G+C S F+ A+ +
Sbjct: 934 EIAEISNGFPGSVGTYHVSYLTLQKDKGSYDHDDVTYLYKLVRGLCSRSFGFKVAQLAQI 993
Query: 925 PETIIQRA 932
P + I+RA
Sbjct: 994 PPSCIRRA 1001
Score = 79 (32.9 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 24/91 (26%), Positives = 41/91 (45%)
Query: 119 NGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESI 178
+ S K L ++++ KSK+P VL+ VG Y G DA I G+ + + +
Sbjct: 99 SSSRKYTPLEQQVVELKSKYPDVVLMVEVGYRYRFFGEDAEIAARVLGI--YAHM-DHNF 155
Query: 179 PKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQ 209
A P L + L GY + +V++ +
Sbjct: 156 MTASVPTFRLNFHVRRLVNAGYKIGVVKQTE 186
Score = 41 (19.5 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 418 EIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNV 463
E+A QA+ + K+ SI F K L +R ++EF ++ +
Sbjct: 633 ELAEARQAVLVIREKLDSSIASFR---KKLAIR---NLEFLQVSGI 672
>ASPGD|ASPL0000041666 [details] [associations]
symbol:mshA species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 261 (96.9 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 64/183 (34%), Positives = 98/183 (53%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
LLTG N GKS+LLR C A ++ G +P SA + D IM + + D+ +S+F
Sbjct: 939 LLTGANAAGKSTLLRMTCVAVIMAQVGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTF 998
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 873
VE+SE + I++ T RSLV++DE+ RGT + G +A +++ + +IG LG +TH H
Sbjct: 999 FVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYH 1058
Query: 874 GI---FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 930
+ F +IK K E + + +KL DG+ S A G+P +I+
Sbjct: 1059 SLAAEFENHPEIKPKRMKIHVDEN-ERRVTFLYKLEDGVAEGSFGMHCAAMCGIPNKVIE 1117
Query: 931 RAE 933
RAE
Sbjct: 1118 RAE 1120
Score = 45 (20.9 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 129 WEMLQFKSKFPREVLLCRVGDFYEAIGIDACI 160
WE+ K KF V+ + G FYE DA I
Sbjct: 299 WEI---KQKFWDTVVFFKKGKFYELYENDATI 327
>UNIPROTKB|Q5BCM2 [details] [associations]
symbol:AN1708.2 "Protein required for mismatch repair in
mitosis and meiosis (Eurofung)" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 261 (96.9 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 64/183 (34%), Positives = 98/183 (53%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
LLTG N GKS+LLR C A ++ G +P SA + D IM + + D+ +S+F
Sbjct: 939 LLTGANAAGKSTLLRMTCVAVIMAQVGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTF 998
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTHLH 873
VE+SE + I++ T RSLV++DE+ RGT + G +A +++ + +IG LG +TH H
Sbjct: 999 FVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYH 1058
Query: 874 GI---FSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQ 930
+ F +IK K E + + +KL DG+ S A G+P +I+
Sbjct: 1059 SLAAEFENHPEIKPKRMKIHVDEN-ERRVTFLYKLEDGVAEGSFGMHCAAMCGIPNKVIE 1117
Query: 931 RAE 933
RAE
Sbjct: 1118 RAE 1120
Score = 45 (20.9 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 129 WEMLQFKSKFPREVLLCRVGDFYEAIGIDACI 160
WE+ K KF V+ + G FYE DA I
Sbjct: 299 WEI---KQKFWDTVVFFKKGKFYELYENDATI 327
>UNIPROTKB|Q752H0 [details] [associations]
symbol:AFR603C "AFR603Cp" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000735 "removal of nonhomologous ends"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0006311
"meiotic gene conversion" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
EMBL:AE016819 GenomeReviews:AE016819_GR SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 OrthoDB:EOG4S7NZ5
GO:GO:0000735 RefSeq:NP_986150.1 ProteinModelPortal:Q752H0
STRING:Q752H0 EnsemblFungi:AAS53974 GeneID:4622435
KEGG:ago:AGOS_AFR603C PhylomeDB:Q752H0 Uniprot:Q752H0
Length = 956
Score = 263 (97.6 bits), Expect = 4.3e-17, Sum P(3) = 4.3e-17
Identities = 98/326 (30%), Positives = 152/326 (46%)
Query: 625 IKQLKPAVDSKGRKVGEEWFST--LKV--EEALERYHEAGAKAKAKVLELLR-GLS-SEL 678
++Q K ++ K G +FST LK+ +E + K A V E++ LS S +
Sbjct: 545 LRQHKKYLELSTVKAGI-YFSTKELKLLSDEIGTLQQDYDRKQSALVKEIVTITLSYSPV 603
Query: 679 QTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDA 738
K++ LV A++ ++ FAHVS +V P + D+ + P
Sbjct: 604 LEKLS-LVLANLDVLCS---FAHVSSYAPIPYVRPVMYDMHAGQRKMELLASRHPLVEAQ 659
Query: 739 AEGSAVHNTV----DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYF 794
E + + N V D ++TGPN GGKS+ +R + LL G VP ++A I
Sbjct: 660 DEVTFISNDVVLEADSSGFAIITGPNMGGKSTYIRQVGVICLLAQIGCFVPCDAAEITIV 719
Query: 795 DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGS 854
DAI+ + + DS G S+F EM E SI+ T SL++IDE+ RGT T G +A S
Sbjct: 720 DAILCRVGAGDSQLKGVSTFMAEMLETASILRNATKNSLIIIDELGRGTSTYDGFGLAWS 779
Query: 855 IIETL-DNIGCLGIVSTHLHGIFSLPLKIKNA------AYKAMGTEYLDGQTVPTWKLVD 907
I E + NIGC + +TH H + +L N A+ + D T+ +K+
Sbjct: 780 ISEHIAKNIGCFALFATHFHELTALADDCPNVTNLHVVAHVEEKSHKSDDITL-LYKVEP 838
Query: 908 GICRESLAFETAKREGVPETIIQRAE 933
GI +S A+ P I++ A+
Sbjct: 839 GISDQSFGIHVAEVVQFPSKIVKMAK 864
Score = 44 (20.5 bits), Expect = 4.3e-17, Sum P(3) = 4.3e-17
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 95 KPS-TLHLVNRLKYSNLLGLD 114
KPS T+ +V+R +Y +LG D
Sbjct: 29 KPSQTIRIVDRGEYYTILGQD 49
Score = 40 (19.1 bits), Expect = 4.3e-17, Sum P(3) = 4.3e-17
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 340 ELLLKVKELYGLENEVT-FRNVTVSYENRPRPLHLGTATQIGAIP 383
E ++KV+ +E+ R V +++ R +HL T+ +G P
Sbjct: 479 EFMIKVE----FNDELARIRTELVDLKDKIRTIHLDTSDDLGFDP 519
Score = 37 (18.1 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 133 QFKSKFPREVLLCRV---GDFYEAIGIDACILVE 163
+F S P+ R+ G++Y +G DA + E
Sbjct: 22 RFASLPPKPSQTIRIVDRGEYYTILGQDAIFVAE 55
>UNIPROTKB|Q74ZT2 [details] [associations]
symbol:AGOS_AGR116W "AGR116Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:AE016820 GenomeReviews:AE016820_GR GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261 PIRSF:PIRSF037677
HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5 RefSeq:NP_986782.2
STRING:Q74ZT2 EnsemblFungi:AAS54606 GeneID:4623084
KEGG:ago:AGOS_AGR116W Uniprot:Q74ZT2
Length = 1167
Score = 243 (90.6 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 73/239 (30%), Positives = 117/239 (48%)
Query: 713 PALKDIELDGANCLKMNG-LS------PYWFDAAEGSA--VHNTVDM----QSLFLLTGP 759
P KD E+D K+NG LS P + G+ + N V + + LLTG
Sbjct: 853 PNFKD-EIDPTTGHKLNGYLSFKELRHPCYNAGVNGATEFIPNDVHLGKSTAQIALLTGA 911
Query: 760 NGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMS 819
N GKS++LR C A ++ G VP E A + D IM + + D+ GKS+F VE+S
Sbjct: 912 NAAGKSTILRMTCIAVIMAQLGCYVPCEDAELSPMDRIMTRLGANDNIMQGKSTFFVELS 971
Query: 820 EIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFSL 878
E R I+ T+R+L+++DE+ RG ++ G IA ++ + ++ LG +TH +G
Sbjct: 972 ETRKILDMATNRTLIVLDELGRGGSSSDGFAIAEGVLHHISTHVQSLGFFATH-YGTLGQ 1030
Query: 879 PLKIKNAAYKAMGTEYL--DGQTVPT--WKLVDGICRESLAFETAKREGVPETIIQRAE 933
+ K + L +G T +KL++G S A G+P ++++ AE
Sbjct: 1031 SFT-HHPMVKPLQMAILVDEGSKKVTFLYKLIEGQSEGSFGMHVAAMCGIPRSVVENAE 1088
Score = 60 (26.2 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 133 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTL 192
Q KSK ++ + G F+E DA + + L GG R ++ AG P ++
Sbjct: 249 QIKSKMWDCIVFFKKGKFFELYEKDAHLANQLFDLKIAGGGRA-NMQLAGIPEMSFDYWA 307
Query: 193 DDLTRNGYSVCIVEE 207
++GY V V++
Sbjct: 308 SQFIQHGYKVAKVDQ 322
>DICTYBASE|DDB_G0275809 [details] [associations]
symbol:msh2 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0032302 "MutSbeta complex"
evidence=IEA;ISS;IBA] [GO:0032301 "MutSalpha complex"
evidence=IEA;ISS;IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0042803 "protein
homodimerization activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0006301 "postreplication repair"
evidence=ISS;IBA] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0045128
"negative regulation of reciprocal meiotic recombination"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 dictyBase:DDB_G0275809 GO:GO:0005524 GO:GO:0042803
GO:GO:0003684 GenomeReviews:CM000151_GR EMBL:AAFI02000013
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:XP_643399.1
HSSP:P23909 ProteinModelPortal:Q553L4 STRING:Q553L4 PRIDE:Q553L4
EnsemblProtists:DDB0229897 GeneID:8619985 KEGG:ddi:DDB_G0275809
ProtClustDB:CLSZ2430933 Uniprot:Q553L4
Length = 937
Score = 244 (91.0 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 89/298 (29%), Positives = 140/298 (46%)
Query: 653 LERYHEAGAKAKAKVLELLRGLSSE-LQTKINILVFASML--LVIGKALF---AHVSEGR 706
++ +EA K A+ L+ GL+ LQ + + L L+ +F +HVS
Sbjct: 590 IDTLNEAYKKWSAEYLDKQDGLAKRTLQIAASFVPLIEDLSSLIATLDVFVTLSHVSSIA 649
Query: 707 RRKWVFPALKDIELD--GANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLF-LLTGPN 760
++ P + + D GA + + G P + + N +D+ QS F ++TGPN
Sbjct: 650 PIPFIRPEIIPLGSDENGAGTVIIGGRHPCVEIQDNVNFIANDIDLTRGQSQFQIITGPN 709
Query: 761 GGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSE 820
GGKS+ +R + L+ G VPA+ A+I D I+ + + DS G S+F EM E
Sbjct: 710 MGGKSTFIRQVGLIVLMAQIGCFVPAQKATIAVVDCILSRVGAGDSQLRGVSTFMAEMLE 769
Query: 821 IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHG--IFS 877
I+ T SL++IDE+ RGT T G +A I E + N IG + +TH H I S
Sbjct: 770 TSYILKVATKNSLIIIDELGRGTSTYDGFGLAWGIAEYICNQIGGFCLFATHFHELTILS 829
Query: 878 --LPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 933
LP+ +KN A T+ + +K+ G C +S A P +I+ A+
Sbjct: 830 DLLPM-VKNLHVSA-STQ--NNTFTLLYKVEQGPCDQSFGIHVAILANFPSQVIENAK 883
>UNIPROTKB|Q3MHE4 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9913
"Bos taurus" [GO:0045190 "isotype switching" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0032301 "MutSalpha complex" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] [GO:0010165 "response to X-ray"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0006302 "double-strand break repair" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0051096 "positive regulation of
helicase activity" evidence=IEA] [GO:0043531 "ADP binding"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0032405 "MutLalpha complex binding"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032181 "dinucleotide repeat insertion binding"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0030183 "B cell differentiation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0006119
"oxidative phosphorylation" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0000287
GO:GO:0003684 GO:GO:0001701 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0006119 GO:GO:0008584 GO:GO:0019237
GO:GO:0003697 GO:GO:0007281 GO:GO:0030183 GO:GO:0006302
GO:GO:0045190 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:BC105268 IPI:IPI00904469
RefSeq:NP_001029756.1 UniGene:Bt.635 ProteinModelPortal:Q3MHE4
SMR:Q3MHE4 STRING:Q3MHE4 PRIDE:Q3MHE4 Ensembl:ENSBTAT00000003556
GeneID:533115 KEGG:bta:533115 CTD:4436 GeneTree:ENSGT00550000074867
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 NextBio:20875918 GO:GO:0032181
GO:GO:0032357 GO:GO:0032142 GO:GO:0032143 GO:GO:0051096
Uniprot:Q3MHE4
Length = 934
Score = 257 (95.5 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 86/313 (27%), Positives = 142/313 (45%)
Query: 632 VDSKGRKVGEEWFSTLKVEEALER--YHEAGAKAKAKVLELLRGLSSELQTKINILVFAS 689
+ G K ++L E + Y EA +++ + G +QT ++L A
Sbjct: 544 IQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQNAIVKEIVNISSGYVEPMQTLNDVL--AQ 601
Query: 690 MLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA-----V 744
+ V+ FAHVS+ +V P + + G + + + + A V
Sbjct: 602 LDAVVS---FAHVSDAAPVPYVRPVILE---KGRGRITLKASRHACVEVQDEVAFIPNDV 655
Query: 745 HNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSY 804
H D Q ++TGPN GGKS+ +R L+ G VP E A + D I+ + +
Sbjct: 656 HFEKDKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCEWAEVSIVDCILARVGAG 715
Query: 805 DSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIG 863
DS G S+F EM E SI+ + T SL++IDE+ RGT T G +A +I E + IG
Sbjct: 716 DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIG 775
Query: 864 CLGIVSTHLHGIFSLPLKI---KNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 920
+ +TH H + +L +I N A+ TE + T+ +++ G+C +S A+
Sbjct: 776 AFCMFATHFHELTALANQIPTVNNLHVTALTTE--ETLTM-LYQVKKGVCDQSFGIHVAE 832
Query: 921 REGVPETIIQRAE 933
P +I+ A+
Sbjct: 833 LANFPRHVIECAK 845
Score = 37 (18.1 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 12/49 (24%), Positives = 29/49 (59%)
Query: 534 EFFEDMESTWKGRV-KRIH--IEPEIAEVEMAAEALSLAVTEDFLPIIS 579
+ ++D+ KG+ ++++ + PE+ E ++A +LS + FL ++S
Sbjct: 236 DIYQDLNRLLKGKKGEQVNSAVLPEM-ENQVAVSSLSAVIK--FLELLS 281
>DICTYBASE|DDB_G0268614 [details] [associations]
symbol:msh6 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0032301 "MutSalpha
complex" evidence=ISS;IBA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0268614
GO:GO:0005524 GO:GO:0009411 GenomeReviews:CM000150_GR GO:GO:0003684
EMBL:AAFI02000003 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 RefSeq:XP_647085.1 STRING:Q55GU9 PRIDE:Q55GU9
EnsemblProtists:DDB0229918 GeneID:8615889 KEGG:ddi:DDB_G0268614
ProtClustDB:CLSZ2497299 Uniprot:Q55GU9
Length = 1260
Score = 259 (96.2 bits), Expect = 3.0e-16, Sum P(3) = 3.0e-16
Identities = 63/187 (33%), Positives = 99/187 (52%)
Query: 752 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 811
SL +LTGPN GGKS+LLR C ++ G V A S + D I + + D+ G+
Sbjct: 1021 SLMVLTGPNMGGKSTLLRQSCILVIMAQMGCYVSASSCEMSIVDRIFTRLGANDNILAGQ 1080
Query: 812 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVST 870
S+F VE++E +++ T RSLV++DE+ RGT T G IA S++ L + + I +T
Sbjct: 1081 STFMVELAETSAVLKYATKRSLVILDELGRGTSTFDGYSIAYSVLNYLATKVQSMCIFAT 1140
Query: 871 HLHGIFSLPLKIKNAAYKAMGTEYLDGQT---VPTWKLVDGICRESLAFETAKREGVPET 927
H + P +++ A T ++D + + +KL G+C S A G+P
Sbjct: 1141 HYQSLAYEPT-VRDLISTAYMTCHVDEEAKKVIFLYKLASGVCPNSYGLHVASMAGLPRE 1199
Query: 928 IIQRAED 934
II +AE+
Sbjct: 1200 IITKAEE 1206
Score = 45 (20.9 bits), Expect = 3.0e-16, Sum P(3) = 3.0e-16
Identities = 18/77 (23%), Positives = 36/77 (46%)
Query: 476 LNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEF 535
L + E L T + L D E ++ R + +I ++IS+ + +DNI S+
Sbjct: 709 LRDSPETLQKVTAILNKLP-DLERMIARIRAQTSKISDLISV-------LNHFDNIHSKL 760
Query: 536 FEDMESTWKGRVKRIHI 552
E ++ +++ IH+
Sbjct: 761 LELLDEA--EQIESIHL 775
Score = 41 (19.5 bits), Expect = 7.6e-16, Sum P(3) = 7.6e-16
Identities = 23/96 (23%), Positives = 40/96 (41%)
Query: 443 LVKLLELREANHIEFCRIKNVLDEILH---MYGNSELNEILELLMDPTWVATGLKIDFET 499
L LLE R+ + K VL +IL +Y N I +L ++ K+ F++
Sbjct: 915 LTSLLEERDTYEV---LSKEVLKKILSNFAIYFNHFQIAITKLSQLDCLLSL-YKVSFQS 970
Query: 500 LVEECRLASVRIGEMISLDGESDQKICSYDNIPSEF 535
++ CR V + +D + + C Y +F
Sbjct: 971 SIQMCRPLFVSSDQRGFIDVKDMRHPCIYSKSGDDF 1006
Score = 40 (19.1 bits), Expect = 3.0e-16, Sum P(3) = 3.0e-16
Identities = 19/81 (23%), Positives = 33/81 (40%)
Query: 129 WEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNL 188
W++ KSK V+ + G FYE DA I + L + + G P ++
Sbjct: 368 WDI---KSKNYDTVVFFKKGKFYELYESDADIGHQQLHLKLTDRVNMRMV---GVPEMSF 421
Query: 189 RQTLDDLTRNGYSVCIVEEVQ 209
L G+ V V++++
Sbjct: 422 NHWASKLIHLGHKVAKVDQME 442
>UNIPROTKB|Q7R8N0 [details] [associations]
symbol:PY07191 "DNA mismatch repair protein msh2"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01002579 RefSeq:XP_727998.1
ProteinModelPortal:Q7R8N0 STRING:Q7R8N0 GeneID:3800207
KEGG:pyo:PY07191 EuPathDB:PlasmoDB:PY07191 Uniprot:Q7R8N0
Length = 593
Score = 246 (91.7 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 58/192 (30%), Positives = 101/192 (52%)
Query: 744 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 803
+H + L ++TGPN GGKS+ +R I +L G+ VP + IP F IM + +
Sbjct: 328 IHMNKNKSRLIIVTGPNMGGKSTYIRQIAIICILAQIGMFVPCDFCEIPIFTQIMCRVGA 387
Query: 804 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE-TLDNI 862
D G S+F EM E +I+ + SL+++DE+ RGT T +G I+ SI + LDNI
Sbjct: 388 SDFQLKGISTFLSEMIEASAIIKNADNNSLIIVDELGRGTSTYEGLGISWSIGKYILDNI 447
Query: 863 GCLGIVSTHLHGIFSLPLKIKNAAYKAMGT--EYLDGQTVPTWKLVDGICRESLAFETAK 920
C + +TH H + ++ + + + + T + + + +++ DG +S A+
Sbjct: 448 KCFCLFATHFHEMSNIAYQCEGVINRHIETIIDQKNKKICFLYEIKDGASNKSYGVNVAE 507
Query: 921 REGVPETIIQRA 932
+P+ +IQ+A
Sbjct: 508 IAKLPKDVIQKA 519
Score = 39 (18.8 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 29/138 (21%), Positives = 51/138 (36%)
Query: 461 KNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRI-GEMISLDG 519
K L+EIL + LN+ + L D + LK E + L S E+ +
Sbjct: 91 KETLNEILIKPLHDILNKFSKFL-DMIEMTIDLK---EIEENKVYLISKHFDSELEQIYN 146
Query: 520 ESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIIS 579
E + N + +D+ S R + + +I +E V + P++
Sbjct: 147 EKSALMKKIKNHKEDVEKDLFSDKHDRRNKKAMREDIRLIECNTNGFLFRVCKKDCPLVQ 206
Query: 580 RIKATTAPLGGPKGEILY 597
+ K P+ K E L+
Sbjct: 207 QQKKKYLPIRMNKNEFLF 224
>ASPGD|ASPL0000012704 [details] [associations]
symbol:AN3749 species:162425 "Emericella nidulans"
[GO:0061500 "gene conversion at mating-type locus, termination of
copy-synthesis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 244 (91.0 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 62/204 (30%), Positives = 107/204 (52%)
Query: 742 SAVHNTVDMQS----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 797
S V N +++ S L+TGPN GGKSS +R + +++G G VPA++A + DA+
Sbjct: 857 SYVPNDINLDSSKTRALLVTGPNMGGKSSYVRQVALIAIMGQIGSYVPAQAAKLGMLDAV 916
Query: 798 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 857
M ++D+ G+S+F VE+SE I+ T RSLV++DE+ RGT T G IA ++++
Sbjct: 917 FTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLD 976
Query: 858 TL-DNIGCLGIVSTHLHG----IFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGI 909
+ +I L + TH + S P L+ + + GT D +++ +G+
Sbjct: 977 YMVRSIRSLTLFITHYQHLSAMVHSFPDGELRNVHMRFSESGTG-ADEDITFLYEIGEGV 1035
Query: 910 CRESLAFETAKREGVPETIIQRAE 933
S A+ +P +++ A+
Sbjct: 1036 AHRSYGLNVARLANLPAPLLEMAK 1059
Score = 50 (22.7 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 41/167 (24%), Positives = 66/167 (39%)
Query: 118 KNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGG-LRPE 176
K G K + ++++ K K +LL VG + G DA I + + G R +
Sbjct: 189 KKGGGKLTPMEKQVIEIKKKHMDTILLIEVGYKFRFFGEDARIAAKELSIVCIPGKFRYD 248
Query: 177 SIPK---------AGCPVVNLRQTLDDLTRNGYSVCIVEEVQ-GPTQAR--SRKSRFISG 224
P A PV L + L G+ V +V +++ +A +R + F+
Sbjct: 249 EHPSEAHLDRFASASIPVQRLHVHVKRLVAAGHKVGVVRQLETAALKAAGDNRNAPFVRK 308
Query: 225 --HAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILET 269
+ + S Y ID D++ E SA GY I+ I ET
Sbjct: 309 LTNVYTKSTY------ID-DIESLEGSTAGASGASATGY-ILCITET 347
Score = 42 (19.8 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 478 EILELLMDPTW-VATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFF 536
EI + MD + G K F E+ R+A+ + ++ + G+ YD PSE
Sbjct: 204 EIKKKHMDTILLIEVGYKFRF--FGEDARIAAKELS-IVCIPGKF-----RYDEHPSEAH 255
Query: 537 EDMESTWKGRVKRIHI 552
D ++ V+R+H+
Sbjct: 256 LDRFASASIPVQRLHV 271
>UNIPROTKB|Q5B6T1 [details] [associations]
symbol:msh3 "DNA mismatch repair protein msh3"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
EMBL:BN001302 EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 244 (91.0 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 62/204 (30%), Positives = 107/204 (52%)
Query: 742 SAVHNTVDMQS----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAI 797
S V N +++ S L+TGPN GGKSS +R + +++G G VPA++A + DA+
Sbjct: 857 SYVPNDINLDSSKTRALLVTGPNMGGKSSYVRQVALIAIMGQIGSYVPAQAAKLGMLDAV 916
Query: 798 MLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 857
M ++D+ G+S+F VE+SE I+ T RSLV++DE+ RGT T G IA ++++
Sbjct: 917 FTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLD 976
Query: 858 TL-DNIGCLGIVSTHLHG----IFSLP---LKIKNAAYKAMGTEYLDGQTVPTWKLVDGI 909
+ +I L + TH + S P L+ + + GT D +++ +G+
Sbjct: 977 YMVRSIRSLTLFITHYQHLSAMVHSFPDGELRNVHMRFSESGTG-ADEDITFLYEIGEGV 1035
Query: 910 CRESLAFETAKREGVPETIIQRAE 933
S A+ +P +++ A+
Sbjct: 1036 AHRSYGLNVARLANLPAPLLEMAK 1059
Score = 50 (22.7 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 41/167 (24%), Positives = 66/167 (39%)
Query: 118 KNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGG-LRPE 176
K G K + ++++ K K +LL VG + G DA I + + G R +
Sbjct: 189 KKGGGKLTPMEKQVIEIKKKHMDTILLIEVGYKFRFFGEDARIAAKELSIVCIPGKFRYD 248
Query: 177 SIPK---------AGCPVVNLRQTLDDLTRNGYSVCIVEEVQ-GPTQAR--SRKSRFISG 224
P A PV L + L G+ V +V +++ +A +R + F+
Sbjct: 249 EHPSEAHLDRFASASIPVQRLHVHVKRLVAAGHKVGVVRQLETAALKAAGDNRNAPFVRK 308
Query: 225 --HAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILET 269
+ + S Y ID D++ E SA GY I+ I ET
Sbjct: 309 LTNVYTKSTY------ID-DIESLEGSTAGASGASATGY-ILCITET 347
Score = 42 (19.8 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 478 EILELLMDPTW-VATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFF 536
EI + MD + G K F E+ R+A+ + ++ + G+ YD PSE
Sbjct: 204 EIKKKHMDTILLIEVGYKFRF--FGEDARIAAKELS-IVCIPGKF-----RYDEHPSEAH 255
Query: 537 EDMESTWKGRVKRIHI 552
D ++ V+R+H+
Sbjct: 256 LDRFASASIPVQRLHV 271
>RGD|1563954 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair" evidence=ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0019237 "centromeric DNA binding" evidence=ISO] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0032302 "MutSbeta complex"
evidence=ISO] [GO:0043570 "maintenance of DNA repeat elements"
evidence=ISO] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO] [GO:0051096 "positive regulation of
helicase activity" evidence=ISO] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0032357 "oxidized
purine DNA binding" evidence=ISO] [GO:0003697 "single-stranded DNA
binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0032139 "dinucleotide insertion or deletion
binding" evidence=ISO] [GO:0032142 "single guanine insertion
binding" evidence=ISO] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=ISO] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000710
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOGENOM:HOG000029776
GO:GO:0016447 IPI:IPI00196502 UniGene:Rn.162551 EMBL:BC091283
ProteinModelPortal:Q5BJY1 STRING:Q5BJY1 UCSC:RGD:1563954
HOVERGEN:HBG071048 InParanoid:Q5BJY1 ArrayExpress:Q5BJY1
Genevestigator:Q5BJY1 Uniprot:Q5BJY1
Length = 265
Score = 213 (80.0 bits), Expect = 4.4e-16, P = 4.4e-16
Identities = 60/203 (29%), Positives = 100/203 (49%)
Query: 746 NTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 805
N D + + ++TGPN GGKSS ++ + ++ G VPAE A+I D I + D
Sbjct: 2 NLSDSERVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRRGAAD 61
Query: 806 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET-LDNIGC 864
+ G+S+F E+++ I+ T RSLV++DE+ RGT T G IA + +E + ++
Sbjct: 62 NIYKGRSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKS 121
Query: 865 LGIVSTHLHGIFSL----PLKIKNAAYKAM----GTEYLDG--QTVPT-----WKLVDGI 909
L + TH + L P ++ N + G++ G + +P +++ GI
Sbjct: 122 LTLFVTHYPPVCELEKRYPEQVGNYHMGFLVNEDGSKQDSGDMEQMPDSVTFLYQITRGI 181
Query: 910 CRESLAFETAKREGVPETIIQRA 932
S AK VP I+Q+A
Sbjct: 182 AARSYGLNVAKLADVPREILQKA 204
>POMBASE|SPAC13F5.01c [details] [associations]
symbol:msh1 "mitochondrial MutS protein Msh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
"ATP binding" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS;IDA] [GO:0006298 "mismatch repair" evidence=ISM]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0030983 "mismatched DNA binding" evidence=ISM] [GO:0043504
"mitochondrial DNA repair" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 PomBase:SPAC13F5.01c GO:GO:0005739
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 EMBL:AB027833 PIR:T38256 RefSeq:NP_593649.2
ProteinModelPortal:O13921 STRING:O13921 PRIDE:O13921
EnsemblFungi:SPAC13F5.01c.1 GeneID:2542833 KEGG:spo:SPAC13F5.01c
HOGENOM:HOG000157750 OMA:LAMQCGD OrthoDB:EOG42591V NextBio:20803875
SUPFAM:SSF53150 Uniprot:O13921
Length = 941
Score = 234 (87.4 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 63/187 (33%), Positives = 95/187 (50%)
Query: 752 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 811
+++L+TGPN GKS+ LR S+L G VPA +A I D I + S D+ K
Sbjct: 741 NIWLITGPNMAGKSTFLRQNAIISILAQIGSFVPASNARIGIVDQIFSRIGSADNLYQQK 800
Query: 812 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVST 870
S+F VEM E I+ T RS V++DEI RGT + G IA ++ L I + +T
Sbjct: 801 STFMVEMMETSFILKNATRRSFVIMDEIGRGTTASDGIAIAYGCLKYLSTINHSRTLFAT 860
Query: 871 HLHGIFSLPLKIKNA-AYKAMGTEYLDGQTVP-TWKLVDGICRESLAFETAKREGVPETI 928
H H + +L KN Y + D T +KL G+ +S + A+ G+P+ +
Sbjct: 861 HAHQLTNLTKSFKNVECYCTNLSIDRDDHTFSFDYKLKKGVNYQSHGLKVAEMAGIPKNV 920
Query: 929 IQRAEDL 935
+ AE++
Sbjct: 921 LLAAEEV 927
Score = 57 (25.1 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 27/90 (30%), Positives = 38/90 (42%)
Query: 135 KSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPES-IPKAGCPVVNLRQTLD 193
+ KF VLL +VG+FYE A + L +S + AG P L + L
Sbjct: 71 QKKFADCVLLTKVGNFYEMYFEQAEKIGPLLNLRVSKKKTSKSDVSMAGFPFFKLDRYLK 130
Query: 194 DLTRN-GYSVCIVEEVQGPTQARSRKSRFI 222
L + V + EEV P S K+ +I
Sbjct: 131 ILVEDLKKCVALSEEVIRPVDDLSSKNMYI 160
>UNIPROTKB|Q76DY7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:274 "Thermus
thermophilus" [GO:0000400 "four-way junction DNA binding"
evidence=IDA] [GO:0004519 "endonuclease activity" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IMP] [GO:0030983 "mismatched DNA
binding" evidence=IDA] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0016887 GO:GO:0006298
GO:GO:0004519 GO:GO:0045910 SMART:SM00463 PROSITE:PS50828
GO:GO:0045005 SUPFAM:SSF48334 GO:GO:0000400 KO:K07456
PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069 EMBL:AB107662
RefSeq:YP_144911.1 ProteinModelPortal:Q76DY7 GeneID:3169358
KEGG:ttj:TTHA1645 Uniprot:Q76DY7
Length = 744
Score = 248 (92.4 bits), Expect = 6.6e-16, Sum P(3) = 6.6e-16
Identities = 112/382 (29%), Positives = 181/382 (47%)
Query: 569 AVTEDFLPIISRIKATTAPLGGPKGEILYA---REHEAVWFKGKKFRPTVWASTPGEEQI 625
AV ++ P +++I+ PL + LYA R EA + R + P +
Sbjct: 132 AVKDEASPRLAQIRRELRPLRQQILDRLYALMDRHREAFQDRFVTLRRERYC-VPVRAGM 190
Query: 626 KQLKPAV---DSK-GRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTK 681
Q P + +S+ G + E FS +K+ L+ K + +V +LR LS L
Sbjct: 191 AQKVPGILLDESESGATLFIEPFSVVKLNNRLQALR---LKEEEEVNRILRDLSERLAKD 247
Query: 682 INI---LVFASML-LVIGKALFAHVSEGRRRKWVFPALKD-IELDGANCLKMNGLSPYWF 736
+ L +L LV +A A G R PA + EL A + L P
Sbjct: 248 EGVPKTLEALGLLDLVQAQAALAR-DLGLSR----PAFGERYELYRA----FHPLIP--- 295
Query: 737 DAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA 796
DA S + + + L++GPN GGK++LL+++ A L+ GL V AE A + + D
Sbjct: 296 DAVRNSFALD--EKNRILLISGPNMGGKTALLKTLGLAVLMAQSGLFVAAEKALLAWPDR 353
Query: 797 IMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 856
+ + S + S+F + +R ++ TS SLVLIDE+ GT+ +G ++ +I+
Sbjct: 354 VYADIGDEQSLQENLSTFAGHLRRLREMLEEATSHSLVLIDELGSGTDPEEGAALSQAIL 413
Query: 857 ETLDNIGCLGIVSTHLHGI--FSLPLK-IKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 913
E L G G+V+THL + F+ + I+NA+ + E L PT++LV G+ S
Sbjct: 414 EALLERGVKGMVTTHLSPLKAFAQGREGIQNASMR-FDLEALR----PTYELVLGVPGRS 468
Query: 914 LAFETAKREGVPETIIQRAEDL 935
A A+R +PE +++RAE L
Sbjct: 469 YALAIARRLALPEEVLKRAEAL 490
Score = 45 (20.9 bits), Expect = 6.6e-16, Sum P(3) = 6.6e-16
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 409 DLLLNPPAYEIASTI-QAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEI 467
+ L P A A T+ +A + ++ S PE K LE A E +KN L ++
Sbjct: 50 EALSYPYALPEAGTLREAYGRALAGARLSGPELLKAAKALEEAMALKEELLPLKNALSQV 109
Query: 468 LHMYGN 473
G+
Sbjct: 110 AEGIGD 115
Score = 38 (18.4 bits), Expect = 6.6e-16, Sum P(3) = 6.6e-16
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 10 VVSFPKLRSLSSVFLRSPL 28
V+ FP++R+L + ++PL
Sbjct: 7 VLEFPRVRALLAERAKTPL 25
>UNIPROTKB|Q7RQK0 [details] [associations]
symbol:PY01096 "MutS homolog 2-related" species:73239
"Plasmodium yoelii yoelii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01000289 RefSeq:XP_728672.1
ProteinModelPortal:Q7RQK0 STRING:Q7RQK0 GeneID:3801212
KEGG:pyo:PY01096 EuPathDB:PlasmoDB:PY01096 Uniprot:Q7RQK0
Length = 853
Score = 236 (88.1 bits), Expect = 8.3e-16, P = 8.3e-16
Identities = 55/136 (40%), Positives = 78/136 (57%)
Query: 744 VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKS 803
+H + L ++TGPN GGKS+ +R I SL+ G VP+ A IP F IM + S
Sbjct: 581 IHMDKENNRLNIITGPNMGGKSTYIRQIAIISLMAHIGCFVPSTYAKIPIFSQIMCRIGS 640
Query: 804 YDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE-TLDNI 862
D G S+F EM E+ +I+ S +LV+IDE+ RGT T +G I+ S+ L+NI
Sbjct: 641 SDIQLKGISTFFSEMIEVSAIIKNADSDTLVIIDELGRGTSTYEGFGISWSVANYLLNNI 700
Query: 863 GCLGIVSTHLHGIFSL 878
CL + +TH H I +L
Sbjct: 701 KCLCLFATHFHEISNL 716
>UNIPROTKB|O13396 [details] [associations]
symbol:msh-2 "DNA mismatch repair protein msh-2"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:AF030634 EMBL:AABX02000010
RefSeq:XP_959643.1 UniGene:Ncr.25288 ProteinModelPortal:O13396
STRING:O13396 EnsemblFungi:EFNCRT00000003090 GeneID:3875790
KEGG:ncr:NCU02230 OrthoDB:EOG4S7NZ5 GO:GO:0000735 Uniprot:O13396
Length = 937
Score = 242 (90.2 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 56/162 (34%), Positives = 88/162 (54%)
Query: 747 TVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDS 806
T + S ++TGPN GGKS+ +R I +L+ G VP SA + FD+I+ + + DS
Sbjct: 648 TREDSSFLIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCSSAELTIFDSILARVGASDS 707
Query: 807 PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCL 865
G S+F EM E +I+ + T+ SL++IDE+ RGT T G +A +I E + IGC
Sbjct: 708 QLKGVSTFMAEMLETANILKSATAESLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCF 767
Query: 866 GIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVD 907
+ +TH H + +L + N + T ++ G T + D
Sbjct: 768 ALFATHFHELTALADQYPNVKNLHV-TAHISGTDTDTDVITD 808
Score = 47 (21.6 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 30/119 (25%), Positives = 49/119 (41%)
Query: 602 EAVWFKGKKFRPTVWASTPGE---EQIKQLKPA----VDSK--GRKVGEEWFSTLKVEEA 652
EA++ GK+ +WAS G + +KQ P V+ + G+ G +K+
Sbjct: 87 EALFKLGKRIE--IWASPSGRMNWKVVKQASPGNLQDVEDELGGQFEGAPVILAVKISAK 144
Query: 653 LERYHEAGAK-AKAKVLELLRGLSSELQTKINILVFASMLLVIG-KALFAHVSEGRRRK 709
G A A V EL G+S L + F ++L+ +G K +G + K
Sbjct: 145 ASEARTVGVCFADASVREL--GVSEFLDNDL-YSNFEALLIQLGVKECIVTQDKGEKEK 200
Score = 45 (20.9 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 903 WKLVDGICRESLAFETAKREGVPETIIQRAE 933
+K+ GIC +S A+ P+ +++ A+
Sbjct: 823 YKVEPGICDQSFGIHVAELVRFPDKVVRMAK 853
>MGI|MGI:101816 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IGI] [GO:0002204 "somatic recombination of immunoglobulin
genes involved in immune response" evidence=IGI] [GO:0003677 "DNA
binding" evidence=ISO;IMP] [GO:0003684 "damaged DNA binding"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IC;IDA] [GO:0006119 "oxidative
phosphorylation" evidence=IMP] [GO:0006200 "ATP catabolic process"
evidence=ISO;IMP] [GO:0006281 "DNA repair" evidence=ISO;IMP]
[GO:0006298 "mismatch repair" evidence=IGI;ISO;IDA;IMP] [GO:0006301
"postreplication repair" evidence=ISO;IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006915 "apoptotic process"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0010165 "response to X-ray" evidence=IMP] [GO:0010224 "response
to UV-B" evidence=IMP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IGI;IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IGI;IMP]
[GO:0016887 "ATPase activity" evidence=IMP] [GO:0019237
"centromeric DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=IMP] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0030183 "B cell differentiation" evidence=IMP] [GO:0030983
"mismatched DNA binding" evidence=IMP] [GO:0031573 "intra-S DNA
damage checkpoint" evidence=IGI] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO;IDA] [GO:0032138 "single base
insertion or deletion binding" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=ISO;IDA] [GO:0032302 "MutSbeta complex"
evidence=ISO;IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043570 "maintenance of DNA
repeat elements" evidence=ISO;IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IMP] [GO:0045910 "negative regulation
of DNA recombination" evidence=ISO;IMP] [GO:0051096 "positive
regulation of helicase activity" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 MGI:MGI:101816
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 EMBL:X81143 EMBL:U21011 EMBL:BC047117
IPI:IPI00118158 PIR:S53608 RefSeq:NP_032654.1 UniGene:Mm.4619
ProteinModelPortal:P43247 SMR:P43247 IntAct:P43247 STRING:P43247
PhosphoSite:P43247 PaxDb:P43247 PRIDE:P43247
Ensembl:ENSMUST00000024967 GeneID:17685 KEGG:mmu:17685
InParanoid:P43247 NextBio:292252 Bgee:P43247 CleanEx:MM_MSH2
Genevestigator:P43247 GermOnline:ENSMUSG00000024151 Uniprot:P43247
Length = 935
Score = 257 (95.5 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 88/311 (28%), Positives = 143/311 (45%)
Query: 632 VDSKGRKVGEEWFSTLKVEEALER--YHEAGAKAKAKVLELLRGLSSELQTKINILVFAS 689
+ G K S+L E + Y EA +++ + G +QT ++L A
Sbjct: 544 IQKNGVKFTNSELSSLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQTLNDVL--AH 601
Query: 690 MLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFD---AAEGSAVHN 746
+ ++ FAHVS +V P + + + G LK + + A + VH
Sbjct: 602 LDAIVS---FAHVSNAAPVPYVRPVILE-KGKGRIILKASRHACVEVQDEVAFIPNDVHF 657
Query: 747 TVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDS 806
D Q ++TGPN GGKS+ +R L+ G VP ESA + D I+ + + DS
Sbjct: 658 EKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDS 717
Query: 807 PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCL 865
G S+F EM E SI+ + T SL++IDE+ RGT T G +A +I + + IG
Sbjct: 718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISDYIATKIGAF 777
Query: 866 GIVSTHLHGIFSLPLKI---KNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKRE 922
+ +TH H + +L +I N A+ TE + T+ +++ G+C +S A+
Sbjct: 778 CMFATHFHELTALANQIPTVNNLHVTALTTE--ETLTM-LYQVKKGVCDQSFGIHVAELA 834
Query: 923 GVPETIIQRAE 933
P +I A+
Sbjct: 835 NFPRHVIACAK 845
Score = 39 (18.8 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 148 GDFYEAIGIDACI 160
GDFY A G DA +
Sbjct: 40 GDFYTAHGEDALL 52
Score = 37 (18.1 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 534 EFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIIS 579
+ ++D+ KG+ + E+E SL+ FL ++S
Sbjct: 236 DIYQDLNRLLKGKKGEQINSAALPEMENQVAVSSLSAVIKFLELLS 281
>UNIPROTKB|Q7SD11 [details] [associations]
symbol:msh-3 "DNA mismatch repair protein msh-3"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0008094
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 GO:GO:0000735 HOGENOM:HOG000029776 KO:K08736
OMA:KRTKSIY OrthoDB:EOG42NN7M EMBL:AABX02000089 RefSeq:XP_963874.1
ProteinModelPortal:Q7SD11 STRING:Q7SD11
EnsemblFungi:EFNCRT00000009637 GeneID:3880023 KEGG:ncr:NCU08115
Uniprot:Q7SD11
Length = 1145
Score = 243 (90.6 bits), Expect = 1.5e-15, Sum P(4) = 1.5e-15
Identities = 57/142 (40%), Positives = 81/142 (57%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
L+TGPN GGKSS R++ LL G VPA S S+ DAI M + D+ G+S+F
Sbjct: 879 LITGPNMGGKSSYTRAVALLVLLAQIGSFVPATSMSLTLSDAIFTRMGARDNLFKGESTF 938
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE-TLDNIGCLGIVSTHLH 873
VE+SE +I+ T RSLV++DE+ RGT T G IAG+++E + ++GCL + TH
Sbjct: 939 MVEVSETAAILRQATPRSLVVLDELGRGTSTHDGRAIAGAVLEYVVRDVGCLMLFVTHYQ 998
Query: 874 GIFSLP--LKIKNAAYKAMGTE 893
+ + L + K G E
Sbjct: 999 DLAGVAEGLTVGEGEEKRRGVE 1020
Score = 48 (22.0 bits), Expect = 1.5e-15, Sum P(4) = 1.5e-15
Identities = 38/162 (23%), Positives = 58/162 (35%)
Query: 118 KNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGG-LRPE 176
K G L L + L+ K K +L+ VG + G DA I + G R +
Sbjct: 182 KTGKLTPMEL--QFLEIKRKHMDTLLIVEVGYKFRFFGEDARIAARELSIVCIPGKFRYD 239
Query: 177 SIPK---------AGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAH 227
P A PV L L GY V +V +++ ++ +R
Sbjct: 240 EHPSEAHLDRFASASIPVHRLPVHAKRLVAAGYKVGVVRQIETAALKKAGDNRNAPFVRK 299
Query: 228 PGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILET 269
+ Y G ID + +P G S GY ++ + ET
Sbjct: 300 LTNVYTKGTY-IDETGELDQPGETTGASSG--GY-LLCLTET 337
Score = 45 (20.9 bits), Expect = 1.5e-15, Sum P(4) = 1.5e-15
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 958 GASCVYVMLRPDKKLYIGQTD------DLDGRIRAHRGKEGMQSASFLYFVVPG 1005
G CV++ +K D D DG+ A K+ + +FLY + PG
Sbjct: 1018 GVECVHMRFASNKSRTSMDDDAMEVDGDGDGQEGAGADKDEEEEITFLYDLAPG 1071
Score = 44 (20.5 bits), Expect = 1.5e-15, Sum P(4) = 1.5e-15
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 531 IPSEFFEDMESTW---KG--RVKRIHIEPE---IAEVEMAAEALSLAVTEDFLPIISRIK 582
+P+ + + ++W G +V R H IAE + E+L+ A + F ++S+I
Sbjct: 724 VPNTDLKRVPASWAKISGTKKVSRFHTPTVLRLIAERDQHKESLASACDQAFSDLLSQIA 783
Query: 583 ATTAPL 588
PL
Sbjct: 784 GEYQPL 789
>UNIPROTKB|Q75D87 [details] [associations]
symbol:AGOS_ABR137W "ABR137Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] [GO:0043504
"mitochondrial DNA repair" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005739 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE016815 GenomeReviews:AE016815_GR GO:GO:0008094
GO:GO:0043504 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000157750
OrthoDB:EOG42591V SUPFAM:SSF53150 GO:GO:0032300 GO:GO:0032139
RefSeq:NP_983084.2 STRING:Q75D87 EnsemblFungi:AAS50908
GeneID:4619194 KEGG:ago:AGOS_ABR137W Uniprot:Q75D87
Length = 955
Score = 209 (78.6 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 92/349 (26%), Positives = 152/349 (43%)
Query: 619 TPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEE-----ALERYHEAGAKAKAKVLELL-- 671
T G +K++ V+ +G +V + F ++ + E ++E G LELL
Sbjct: 613 TGGGNSLKKILRNVN-EGAEVADSRFRIIRSSANTCWLSHEPWNELGKAMHLTTLELLDE 671
Query: 672 -RGLSSELQTKINILVFASMLLVIGKAL-FAHVSEG-----RRRKWVFPALKD---IELD 721
R + LQ KI + +++ + I + + + V + V P + + +E+
Sbjct: 672 ERYILDNLQRKI--ITYSTEIRAIAQTVDYLDVLSSFAILASEKNLVCPQVDESSALEIV 729
Query: 722 GANCLKM-NGLSPYWFDAAEGSAVHNTVDMQS--LFLLTGPNGGGKSSLLRSICAASLLG 778
G L + +GL A G+ N +Q+ ++++TGPN GGKS+ LR +L
Sbjct: 730 GGRHLVVEDGLQ----SRAPGNFTANDCSLQNGDIWIVTGPNMGGKSTFLRQTAIIVILA 785
Query: 779 ICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDE 838
G VP SA I D I + S D + S+F VEM E ++ T RSL ++DE
Sbjct: 786 QIGCYVPCASAHIGLVDKIFSRVGSADDLYNDMSTFMVEMLETSFMLKGATKRSLAILDE 845
Query: 839 ICRGTETAKGTCIAGSIIE-TLDNIGCLGIVSTHLHGIFS------LPLKIKNAA--YKA 889
I RGT G IA + + L C + ++H S LP + Y+
Sbjct: 846 IGRGTNAEDGVGIAYTTLHHMLTKNRCRALFASHFGRELSELVEQHLPPGARKRVHFYRT 905
Query: 890 MGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIA 938
E+ +G++ K+ GIC S A A+ G P+ + A + A
Sbjct: 906 NVREH-NGRSFYDHKITPGICLSSDAIRVAQMAGFPQEALDVARRVLAA 953
Score = 78 (32.5 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 31/90 (34%), Positives = 45/90 (50%)
Query: 137 KFPREVLLCRVGDFYEAIGIDACILVEYAG-LNPFGGLRPES---IPKAGCPVVNLRQTL 192
K+P VLL ++G FYE A +YA LN R S +P AG P+ L + L
Sbjct: 86 KYPDYVLLTQMGSFYELYYEHA---EKYAPKLNITLTRREYSHGKVPFAGFPLEQLSRHL 142
Query: 193 DDLTRN-GYSVCIVEEVQGPTQARSRKSRF 221
L + GYSV +VE+ + A + + +F
Sbjct: 143 KVLVKEYGYSVAVVEQFRKDDIADNERYKF 172
>ASPGD|ASPL0000073909 [details] [associations]
symbol:AN10621 species:162425 "Emericella nidulans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000404 "loop DNA
binding" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0000406 "double-strand/single-strand DNA
junction binding" evidence=IEA] [GO:0032138 "single base insertion
or deletion binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006200 GO:GO:0016887 GO:GO:0030466 GO:GO:0006298
EMBL:BN001303 GO:GO:0000228 GO:GO:0000403 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
GO:GO:0032138 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0000735 EnsemblFungi:CADANIAT00005387 Uniprot:C8V8L9
Length = 945
Score = 240 (89.5 bits), Expect = 1.8e-15, Sum P(3) = 1.8e-15
Identities = 54/141 (38%), Positives = 79/141 (56%)
Query: 749 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 808
D S ++TGPN GGKS+ +R I +L+ G VP A + FD I+ + + DS
Sbjct: 656 DESSFLIITGPNMGGKSTYIRMIGVIALMAQIGCFVPCTEAELTIFDCILARVGASDSQL 715
Query: 809 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 867
G S+F EM E +I+ + TS SL++IDE+ RGT T G +A +I E + I C G+
Sbjct: 716 KGVSTFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGL 775
Query: 868 VSTHLHGIFSL----PLKIKN 884
+TH H + +L P +KN
Sbjct: 776 FATHFHELTTLADRYPKSVKN 796
Score = 47 (21.6 bits), Expect = 1.8e-15, Sum P(3) = 1.8e-15
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 903 WKLVDGICRESLAFETAKREGVPETII----QRAEDL 935
+++ GIC +S A+ PE ++ Q+AE+L
Sbjct: 828 YRVEPGICDQSFGIHVAELVRFPEKVVNMARQKAEEL 864
Score = 45 (20.9 bits), Expect = 1.8e-15, Sum P(3) = 1.8e-15
Identities = 24/103 (23%), Positives = 47/103 (45%)
Query: 436 SIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKI 495
SIP+ L K + ++AN + R+ V L + NS LE +MD + T L+
Sbjct: 378 SIPDLYRLAKRFQRKQANLEDVVRVYQVAIR-LPGFVNS-----LENVMDEEY-QTPLET 430
Query: 496 DFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFED 538
++ + + ++ EM+ + D + +++ I F+D
Sbjct: 431 EYTAKLRNHSASLAKLEEMVETTVDLDA-LENHEFIIKPEFDD 472
>DICTYBASE|DDB_G0281683 [details] [associations]
symbol:msh3 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032302 "MutSbeta
complex" evidence=ISS;IBA] [GO:0032135 "DNA insertion or deletion
binding" evidence=ISS] [GO:0006312 "mitotic recombination"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0000735 "removal of nonhomologous ends" evidence=ISS]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0281683 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0003684 EMBL:AAFI02000042
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 RefSeq:XP_001134558.1
STRING:Q1ZXH0 EnsemblProtists:DDB0232960 GeneID:8623184
KEGG:ddi:DDB_G0281683 OMA:ATRISHI Uniprot:Q1ZXH0
Length = 1428
Score = 250 (93.1 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 77/254 (30%), Positives = 120/254 (47%)
Query: 698 LFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYW---FDAAEGSAVHNTVDMQSL- 753
LF+ ++ P + DG ++ NG P ++GS V NT++++
Sbjct: 1113 LFSLAKVSSLEGYIRPQFVKEKKDGGIQIE-NGRHPVVEAILSGSDGSYVPNTIELRESA 1171
Query: 754 ---FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 810
++TGPN GGKSSLLR ++ G VPA S S+ FDAI M + DS G
Sbjct: 1172 CKSMIITGPNMGGKSSLLRQTALIVIMAQVGCFVPATSCSLSVFDAIYTRMGARDSIGTG 1231
Query: 811 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVS 869
KS+F +E+ E I+ +T +LV++DE+ RGT T G IA S ++ + + C +
Sbjct: 1232 KSTFFIELEETSDILKNSTQNTLVILDELGRGTSTNDGVAIAYSTLKYIVEVMKCYCLFV 1291
Query: 870 THLHGIFSL----PLKIKN--AAY-KAMGTEYLDGQTVPT----WKLVDGICRESLAFET 918
TH + L P ++ N Y + + L +P +KLV G + S
Sbjct: 1292 THYPLLAQLELQYPTQVGNFHMGYLEEKQDQQLQKSVIPKVIFLYKLVKGAAQNSYGLNI 1351
Query: 919 AKREGVPETIIQRA 932
A+ G+P +I A
Sbjct: 1352 ARLAGLPMEVIADA 1365
Score = 39 (18.8 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 622 EEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAK 666
+E+ K+L+ A G G + + +E +++ + G+KA AK
Sbjct: 403 KEEAKRLQQANGGGGDGGGGQIKGSDDEDEEVKKPTKGGSKASAK 447
>UNIPROTKB|E1B8D2 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0000795 "synaptonemal
complex" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007292
GO:GO:0007129 GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:DAAA02055381 IPI:IPI00710632
Ensembl:ENSBTAT00000026367 Uniprot:E1B8D2
Length = 831
Score = 230 (86.0 bits), Expect = 3.5e-15, P = 3.5e-15
Identities = 58/186 (31%), Positives = 98/186 (52%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + + G VPAE A I DAI + S +S + G S+F
Sbjct: 586 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 645
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG--CLGI-VSTH 871
++++++ V T RSLVL+DE +GT T G + ++I +G C + V+T+
Sbjct: 646 MIDLNQVAKAVNNATERSLVLVDEFGKGTNTVDGLALLAAVIRHWLALGPTCPHVFVATN 705
Query: 872 LHGIFSLPLKIKNAAYKAMGTEYL-DGQT-VPTWKLVDGICRESLAFETAKREGVPETII 929
+ L L + + + E DG V +++ +G+ R S A TA + G+PE +I
Sbjct: 706 FLSLVQLQLLPRGPLVQYLTMETCEDGDDLVFFYQVCEGVARASHASHTAAQAGLPEKLI 765
Query: 930 QRAEDL 935
R + +
Sbjct: 766 ARGKQV 771
>UNIPROTKB|F1LXQ9 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 IPI:IPI00950406
Ensembl:ENSRNOT00000067613 ArrayExpress:F1LXQ9 Uniprot:F1LXQ9
Length = 266
Score = 204 (76.9 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 59/202 (29%), Positives = 100/202 (49%)
Query: 749 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMK--SYDS 806
D + + ++TGPN GGKSS ++ + ++ G VPAE A+I D I + + D+
Sbjct: 4 DSERVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRQRRGAADN 63
Query: 807 PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET-LDNIGCL 865
G+S+F E+++ I+ T RSLV++DE+ RGT T G IA + +E + ++ L
Sbjct: 64 IYKGRSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSL 123
Query: 866 GIVSTHLHGIFSL----PLKIKNAAYKAM----GTEYLDG--QTVPT-----WKLVDGIC 910
+ TH + L P ++ N + G++ G + +P +++ GI
Sbjct: 124 TLFVTHYPPVCELEKRYPEQVGNYHMGFLVNEDGSKQDSGDMEQMPDSVTFLYQITRGIA 183
Query: 911 RESLAFETAKREGVPETIIQRA 932
S AK VP I+Q+A
Sbjct: 184 ARSYGLNVAKLADVPREILQKA 205
>ZFIN|ZDB-GENE-040426-2932 [details] [associations]
symbol:msh2 "mutS homolog 2 (E. coli)"
species:7955 "Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA;ISS] [GO:0032302 "MutSbeta complex"
evidence=IEA;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IGI;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0010224 "response to UV-B" evidence=IBA] [GO:0031573 "intra-S
DNA damage checkpoint" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0045190 "isotype switching" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0042771 "intrinsic apoptotic
signaling pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0016446
"somatic hypermutation of immunoglobulin genes" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-040426-2932 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0045190 GO:GO:0010165 GO:GO:0010224
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0031573 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOVERGEN:HBG006399
HSSP:P23909 EMBL:AF412833 IPI:IPI00509799 UniGene:Dr.105564
ProteinModelPortal:Q90XA7 SMR:Q90XA7 STRING:Q90XA7
InParanoid:Q90XA7 ArrayExpress:Q90XA7 Uniprot:Q90XA7
Length = 936
Score = 238 (88.8 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 80/314 (25%), Positives = 147/314 (46%)
Query: 632 VDSKGRKVGEEWFSTLKVE--EALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFAS 689
V G + S+L E ++ E Y EA +++ + G +QT +N ++ A
Sbjct: 544 VQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIAAGYVDPVQT-LNEVI-AQ 601
Query: 690 MLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA-VHNTV 748
+ V+ A+ +H + ++ P K +E G+ L + +A + A + N V
Sbjct: 602 LDAVVSFAVVSHTAPV---PFIRP--KILE-KGSGRLVLKAARHPCVEAQDEVAFIPNDV 655
Query: 749 DM---QSLF-LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSY 804
+ +F ++TGPN GGKS+ +R + L+ G VP + A + D ++ + +
Sbjct: 656 TFISGEKMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAG 715
Query: 805 DSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIG 863
DS G S+F EM E +I+ + + SL++IDE+ RGT T G +A +I E + +
Sbjct: 716 DSQIKGVSTFMAEMLETAAILRSASEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLK 775
Query: 864 CLGIVSTHLHGIFSLPLKI---KNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAK 920
+ +TH H + +L ++ +N A+ T D +K+ G+C +S A+
Sbjct: 776 SFCLFATHFHELTALAQQVPTVRNLHVTALTT---DSTLTMLYKVKKGVCDQSFGIHVAE 832
Query: 921 REGVPETIIQRAED 934
P+ +I A +
Sbjct: 833 LASFPKHVIANARE 846
Score = 43 (20.2 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 600 EHEAVWFKGKKFRPTVWASTPGEEQI-KQLKPAVDSKGRKVGEEWFSTLKVE 650
EH K F PT+ +++ K ++ A+ S R +G E T+K+E
Sbjct: 464 EHHEFLVK-PSFDPTLSDLRENMDRLEKAMQAALSSAARGLGLEATKTVKLE 514
>CGD|CAL0000288 [details] [associations]
symbol:orf19.3608 species:5476 "Candida albicans" [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000735 "removal of nonhomologous ends"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032135 "DNA insertion or deletion binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0000403 "Y-form DNA binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0005634 GO:GO:0006298 GO:GO:0030983
EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG0249 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HSSP:P23909 KO:K08736
RefSeq:XP_714452.1 RefSeq:XP_714501.1 ProteinModelPortal:Q59Y41
STRING:Q59Y41 GeneID:3643846 GeneID:3643889 KEGG:cal:CaO19.11091
KEGG:cal:CaO19.3608 Uniprot:Q59Y41
Length = 1037
Score = 227 (85.0 bits), Expect = 6.2e-15, Sum P(2) = 6.2e-15
Identities = 83/340 (24%), Positives = 155/340 (45%)
Query: 621 GEEQIKQLKPAVDSKGRKV-GEEWFSTLKVEEALERYHEAGAKAKAKVLE-----LLRGL 674
GE + +++ K K+ ++ + +K + + RY + K+L+ L++
Sbjct: 648 GERYLIEIRNNQRDKLSKILDDKDYILIKSTQTITRYRKKSVTEYLKLLQYHEEMLIKTC 707
Query: 675 SSELQTKI-----NILVFASML--LVIGKALFAHVSEGRRRKWVFPALKDIELD----GA 723
E Q + N +F ++ L I L + + + P L D +L A
Sbjct: 708 DEEFQNFLKDLDSNYTLFYKIIKNLAIFDCLLSLTTTSSLPNYTRPTLIDDDLTILVKQA 767
Query: 724 NCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLM 783
+ L P + A ++ D + ++TGPN GGKSS ++++ +++ G
Sbjct: 768 RHPTIEQLRPNY--VANDININIEYDKNRVLIITGPNMGGKSSYVKTVALLTVMTQIGCY 825
Query: 784 VPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGT 843
+P ++A++ FD+I + M + D+ G S+F +EM + ++I++ ++RSL+++DEI RGT
Sbjct: 826 LPCQNATMGIFDSIFIRMGANDNILKGYSTFMMEMLQCKNIISMMSNRSLIILDEIGRGT 885
Query: 844 ETAKGTCIAGSIIETL--DNIGCLGIVSTHLHGIFSLPLKIKN--AAYKAMGTEYLDGQT 899
T G +A SI++ L L + TH I L + N MG + + T
Sbjct: 886 GTIDGISLAYSILKYLIESEFKPLVLFITHYPSIHVLEQEYPNQLVVNYHMGYQEIKNNT 945
Query: 900 ---VPT----WKLVDGICRESLAFETAKREGVPETIIQRA 932
+P + L G+ S AK G+ II++A
Sbjct: 946 PGEIPEIIFLYNLCRGVVNNSYGLNVAKLAGISHDIIKQA 985
Score = 55 (24.4 bits), Expect = 6.2e-15, Sum P(2) = 6.2e-15
Identities = 16/84 (19%), Positives = 37/84 (44%)
Query: 127 LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGG-LRPESIPKAGCPV 185
L ++L+ + ++LL ++G Y+ GI+A + + + + P
Sbjct: 110 LEKQILELTEQHQDKILLIQIGYKYKVFGINALKVSKILNIMYISNDIEDTRFHYCSIPD 169
Query: 186 VNLRQTLDDLTRNGYSVCIVEEVQ 209
L L + +GY V +V++++
Sbjct: 170 TRLHIHLQRILSHGYKVGVVKQIE 193
>UNIPROTKB|Q5BDA1 [details] [associations]
symbol:AN1479.2 "DNA-binding protein of the mitochondria
(Eurofung)" species:227321 "Aspergillus nidulans FGSC A4"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IBA] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0007131 "reciprocal meiotic
recombination" evidence=IRD] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IRD] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BN001307 GO:GO:0006298 GO:GO:0008094
EMBL:AACD01000022 GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 RefSeq:XP_659083.1 STRING:Q5BDA1
EnsemblFungi:CADANIAT00008100 GeneID:2875263 KEGG:ani:AN1479.2
OMA:RVGGFYE Uniprot:Q5BDA1
Length = 924
Score = 226 (84.6 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 59/189 (31%), Positives = 95/189 (50%)
Query: 749 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 808
+ + ++L+TGPN GKS+ LR ++L G VPA+ A I D I + + D
Sbjct: 716 ESERIWLITGPNMAGKSTFLRQNALITILAQVGSFVPADYAEIGIVDQIFSRIGAADDLF 775
Query: 809 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGI 867
+S+F VEM E +I+ T+RS V++DE+ RGT GT ++ + + L C +
Sbjct: 776 RDQSTFMVEMLETAAILKQATARSFVIMDEVGRGTTPEDGTAVSFACLHHLHYRNQCRTL 835
Query: 868 VSTHLHGIFSLPLKIKNAA-YKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPE 926
+TH HG+ + + Y E +G+ KL GI RES A + A+ G+P
Sbjct: 836 FATHFHGLADMTQEFPALGRYCTDVKETTEGRFSFVHKLRKGINRESHALKVAQLAGLPS 895
Query: 927 TIIQRAEDL 935
++ A +
Sbjct: 896 ETLELARSV 904
Score = 54 (24.1 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 27/85 (31%), Positives = 36/85 (42%)
Query: 137 KFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPES--IPKAGCPVVNLRQTLDD 194
KF V+L RVG FYE A L L + + +P AG P L + L
Sbjct: 105 KFKNCVVLTRVGGFYELYFEQAEELAPLLNLK-LATKKTSAGPVPMAGFPFFQLDRFLKI 163
Query: 195 LTRN-GYSVCIVEE--VQGPTQARS 216
L ++ V I EE + +ARS
Sbjct: 164 LVQDLNKFVAISEEFAISAEEKARS 188
>UNIPROTKB|Q81YJ6 [details] [associations]
symbol:BAS3289 "Putative MutS family protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000432 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 225 (84.3 bits), Expect = 7.6e-15, P = 7.6e-15
Identities = 87/299 (29%), Positives = 146/299 (48%)
Query: 645 STLKVEEALERYHEAGAKAKAKVLELLRGLSSE--LQTKINILVFASMLLVIGKALFAHV 702
++LK EEA+E Y ++L L G+ E KIN+ + + +V KA F+
Sbjct: 234 ASLKAEEAMEEY---------QILATLSGMVVENIYHIKINMELISQYDMVFAKAKFSKS 284
Query: 703 SEGRRRKWVFPALKDI-ELDGANCLK--MNG-LSPYWFDAAEGSAVHNTVDMQSLFLLTG 758
+G + P L D + NC ++G + P F+ + + +SL ++TG
Sbjct: 285 IDG-----IEPKLNDHGHIHLVNCKHPLLSGKVVPLNFEIGQ--------NYRSL-IITG 330
Query: 759 PNGGGKSSLLRSICAASLLGICGLMVPAESAS-IPYFDAIMLHMKSYDSPADGKSSFQVE 817
PN GGK+ +L++I +L + GL + + + I F+ + + + S + S+F
Sbjct: 331 PNAGGKTIVLKTIGLLTLATMSGLHIAGDKETEIAIFENVFVDIGDNQSIENALSTFSSH 390
Query: 818 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI-- 875
M + I+ + + +L+L DEI GTE +G +A SI+E GC+ + STH I
Sbjct: 391 MKNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAALAISILEEFYLAGCITVASTHYGEIKR 450
Query: 876 FS-LPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 933
FS + NAA + +E L+ P +KLV G ES A A + V E +++RA+
Sbjct: 451 FSEMHDDFMNAAMQ-FNSETLE----PLYKLVIGKSGESNALWIANKMNVRERVLKRAK 504
>TIGR_CMR|BA_3547 [details] [associations]
symbol:BA_3547 "MutS family protein, putative"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0006259 "DNA metabolic
process" evidence=ISS] InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 225 (84.3 bits), Expect = 7.6e-15, P = 7.6e-15
Identities = 87/299 (29%), Positives = 146/299 (48%)
Query: 645 STLKVEEALERYHEAGAKAKAKVLELLRGLSSE--LQTKINILVFASMLLVIGKALFAHV 702
++LK EEA+E Y ++L L G+ E KIN+ + + +V KA F+
Sbjct: 234 ASLKAEEAMEEY---------QILATLSGMVVENIYHIKINMELISQYDMVFAKAKFSKS 284
Query: 703 SEGRRRKWVFPALKDI-ELDGANCLK--MNG-LSPYWFDAAEGSAVHNTVDMQSLFLLTG 758
+G + P L D + NC ++G + P F+ + + +SL ++TG
Sbjct: 285 IDG-----IEPKLNDHGHIHLVNCKHPLLSGKVVPLNFEIGQ--------NYRSL-IITG 330
Query: 759 PNGGGKSSLLRSICAASLLGICGLMVPAESAS-IPYFDAIMLHMKSYDSPADGKSSFQVE 817
PN GGK+ +L++I +L + GL + + + I F+ + + + S + S+F
Sbjct: 331 PNAGGKTIVLKTIGLLTLATMSGLHIAGDKETEIAIFENVFVDIGDNQSIENALSTFSSH 390
Query: 818 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI-- 875
M + I+ + + +L+L DEI GTE +G +A SI+E GC+ + STH I
Sbjct: 391 MKNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAALAISILEEFYLAGCITVASTHYGEIKR 450
Query: 876 FS-LPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 933
FS + NAA + +E L+ P +KLV G ES A A + V E +++RA+
Sbjct: 451 FSEMHDDFMNAAMQ-FNSETLE----PLYKLVIGKSGESNALWIANKMNVRERVLKRAK 504
>SGD|S000002504 [details] [associations]
symbol:MSH6 "Protein required for mismatch repair in mitosis
and meiosis, forms a" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000710 "meiotic
mismatch repair" evidence=IMP] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032138 "single base insertion or
deletion binding" evidence=IMP;IDA] [GO:0000400 "four-way junction
DNA binding" evidence=IDA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002504
GO:GO:0005524 KO:K06630 GO:GO:0009411 GO:GO:0003684 EMBL:BK006938
GO:GO:0030983 EMBL:Z47746 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 RefSeq:NP_010384.3 GeneID:851676 KEGG:sce:YDR099W
GO:GO:0008094 GO:GO:0036297 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0000710 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
PIR:S51246 RefSeq:NP_010382.3 ProteinModelPortal:Q03834 SMR:Q03834
DIP:DIP-2423N IntAct:Q03834 MINT:MINT-618151 STRING:Q03834
PaxDb:Q03834 PeptideAtlas:Q03834 EnsemblFungi:YDR097C GeneID:851671
KEGG:sce:YDR097C CYGD:YDR097c NextBio:969292 Genevestigator:Q03834
GermOnline:YDR097C Uniprot:Q03834
Length = 1242
Score = 228 (85.3 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 60/186 (32%), Positives = 97/186 (52%)
Query: 753 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKS 812
L LLTG N GKS++LR C A ++ G VP ESA + D IM + + D+ GKS
Sbjct: 977 LGLLTGANAAGKSTILRMACIAVIMAQMGCYVPCESAVLTPIDRIMTRLGANDNIMQGKS 1036
Query: 813 SFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGIVSTH 871
+F VE++E + I+ T+RSL+++DE+ RG ++ G IA S++ + +I LG +TH
Sbjct: 1037 TFFVELAETKKILDMATNRSLLVVDELGRGGSSSDGFAIAESVLHHVATHIQSLGFFATH 1096
Query: 872 LHGIFSLPLK----IKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 927
+G + K ++ + E T +K+++G S A G+ +
Sbjct: 1097 -YGTLASSFKHHPQVRPLKMSILVDEATRNVTF-LYKMLEGQSEGSFGMHVASMCGISKE 1154
Query: 928 IIQRAE 933
II A+
Sbjct: 1155 IIDNAQ 1160
Score = 55 (24.4 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 21/79 (26%), Positives = 34/79 (43%)
Query: 129 WEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNL 188
WE+ KSK ++ + G F+E DA + L GG R ++ AG P ++
Sbjct: 319 WEI---KSKMWDCIVFFKKGKFFELYEKDALLANALFDLKIAGGGRA-NMQLAGIPEMSF 374
Query: 189 RQTLDDLTRNGYSVCIVEE 207
+ GY V V++
Sbjct: 375 EYWAAQFIQMGYKVAKVDQ 393
>UNIPROTKB|J9NUN0 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074977 EMBL:AAEX03008217 EMBL:AAEX03008216
Ensembl:ENSCAFT00000043640 Uniprot:J9NUN0
Length = 725
Score = 222 (83.2 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 56/186 (30%), Positives = 99/186 (53%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + + G VPAE A I DAI + S +S + G S+F
Sbjct: 480 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 539
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG--CLGI-VSTH 871
++++++ V T +SLVLIDE +GT T G + +++ +G C I V+T+
Sbjct: 540 MIDLNQVAKAVNNATKQSLVLIDEFGKGTNTVDGLALLAAVLRHWLALGPTCPHIFVATN 599
Query: 872 LHGIFSLPLKIKNAAYKAMGTEYL-DGQT-VPTWKLVDGICRESLAFETAKREGVPETII 929
+ L L + + + E DG V +++ DG+ + S A TA + G+P+ ++
Sbjct: 600 FLSLVQLQLLPQGPLVQYLTMETCEDGDDLVFFYQVCDGLAKASHASHTAAQAGLPDQLL 659
Query: 930 QRAEDL 935
R +++
Sbjct: 660 TRGKEV 665
>UNIPROTKB|Q7S0U7 [details] [associations]
symbol:NCU07407 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0043504 "mitochondrial DNA repair" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 OMA:RVGGFYE EMBL:AABX02000038
RefSeq:XP_958182.2 UniGene:Ncr.21352 EnsemblFungi:EFNCRT00000007377
GeneID:3874329 KEGG:ncr:NCU07407 Uniprot:Q7S0U7
Length = 1184
Score = 230 (86.0 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
Identities = 67/206 (32%), Positives = 104/206 (50%)
Query: 752 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 811
+++L+TGPN GKS+ LR ++L G VPA+ A + DAI + S D+ +
Sbjct: 977 AIWLITGPNMAGKSTFLRQNALITILAQMGCYVPADYAELGIVDAIFSRVGSADNLYADQ 1036
Query: 812 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVST 870
S+F VEM E +I+ T RS V++DEI RGT GT +A + + L + C G+ +T
Sbjct: 1037 STFMVEMMETAAILRQATPRSFVIMDEIGRGTTPEDGTAVAFASLHHLLTVNKCRGLFAT 1096
Query: 871 HLHGIFSL----PLKIKNAAYKAMGT-----------EYLDGQTVPTWKLVDGICRESLA 915
H H + + L +++ A A + E G V KL G+ R+S A
Sbjct: 1097 HFHAVGDMLKEQGLVVEDGASSAGASWGVAMYCTDVEEDESGGFVYVHKLRKGMNRQSHA 1156
Query: 916 FETAKREGVPETIIQRAEDLYIACGV 941
+ A+ G+PE I+ A+ + GV
Sbjct: 1157 LKVARLAGLPEPAIKIAQQVLAVQGV 1182
Score = 52 (23.4 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
Identities = 29/87 (33%), Positives = 41/87 (47%)
Query: 137 KFPREVLLCRVGDFYE-----AIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQT 191
KF VLL RVG FYE A + + ++ + GG P S+ AG P L +
Sbjct: 275 KFDNCVLLTRVGGFYEMYFEHAEEVGPLLNLKVSQKKTSGG--PVSM--AGFPFFQLDRY 330
Query: 192 L----DDLTRNGYSVCIVEEVQG-PTQ 213
L +DL R+ V I EE + P++
Sbjct: 331 LKVLVEDLNRH---VAIAEEYRNSPSE 354
Score = 44 (20.5 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 495 IDFETLVEECRLASVRIGEMISLDGE 520
ID E LV++ +L GEM++L E
Sbjct: 644 IDEEGLVQQHQLEDSETGEMLALAQE 669
>UNIPROTKB|F1PBG8 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
OMA:NDLVFFY GeneTree:ENSGT00550000074977 EMBL:AAEX03008217
EMBL:AAEX03008216 Ensembl:ENSCAFT00000000966 Uniprot:F1PBG8
Length = 857
Score = 222 (83.2 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 56/186 (30%), Positives = 99/186 (53%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + + G VPAE A I DAI + S +S + G S+F
Sbjct: 612 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 671
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG--CLGI-VSTH 871
++++++ V T +SLVLIDE +GT T G + +++ +G C I V+T+
Sbjct: 672 MIDLNQVAKAVNNATKQSLVLIDEFGKGTNTVDGLALLAAVLRHWLALGPTCPHIFVATN 731
Query: 872 LHGIFSLPLKIKNAAYKAMGTEYL-DGQT-VPTWKLVDGICRESLAFETAKREGVPETII 929
+ L L + + + E DG V +++ DG+ + S A TA + G+P+ ++
Sbjct: 732 FLSLVQLQLLPQGPLVQYLTMETCEDGDDLVFFYQVCDGLAKASHASHTAAQAGLPDQLL 791
Query: 930 QRAEDL 935
R +++
Sbjct: 792 TRGKEV 797
>MGI|MGI:1329021 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000795 "synaptonemal complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0007127 "meiosis I" evidence=IMP] [GO:0007129
"synapsis" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007292 "female gamete generation"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
MGI:MGI:1329021 GO:GO:0005524 GO:GO:0005654 EMBL:AF109905
GO:GO:0006298 Reactome:REACT_120463 GO:GO:0030983 GO:GO:0007292
GO:GO:0007131 Reactome:REACT_27235 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
EMBL:AF397035 EMBL:AF397036 KO:K08741 GeneTree:ENSGT00550000074977
CTD:4439 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z EMBL:AF146227
EMBL:AF107352 IPI:IPI00323518 RefSeq:NP_001139687.1
RefSeq:NP_038628.2 UniGene:Mm.24192 ProteinModelPortal:Q9QUM7
SMR:Q9QUM7 STRING:Q9QUM7 PhosphoSite:Q9QUM7 PRIDE:Q9QUM7
Ensembl:ENSMUST00000007250 Ensembl:ENSMUST00000097338 GeneID:17687
KEGG:mmu:17687 UCSC:uc008cfc.2 HOGENOM:HOG000006649
InParanoid:Q9QUM7 NextBio:292260 Bgee:Q9QUM7 CleanEx:MM_MSH5
Genevestigator:Q9QUM7 GermOnline:ENSMUSG00000007035 Uniprot:Q9QUM7
Length = 833
Score = 221 (82.9 bits), Expect = 3.3e-14, P = 3.3e-14
Identities = 79/295 (26%), Positives = 139/295 (47%)
Query: 663 AKAKVLELLRG-LSSELQTKINILVFASMLLVIGKA-LFAHVSEGRRRKWVFPALKDIEL 720
A+ K L+ L G L E++ + +L++ V+ +A + V + R V AL
Sbjct: 480 ARTKELDTLLGDLHCEIRDQETLLMYQLQCQVLARASVLTRVLDLASRLDVLLALASAAR 539
Query: 721 D-GAN------CLK----MNGLSPYWFDAAEGSAVHNTVDMQS----LFLLTGPNGGGKS 765
D G + C+ NG P + + V N+ D + ++TGPN GKS
Sbjct: 540 DYGYSRPHYSPCIHGVRIRNGRHPL-MELCARTFVPNSTDCGGDQGRVKVITGPNSSGKS 598
Query: 766 SLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV 825
L+ + + + + G VPAE A I DAI + S +S + G S+F ++++++ V
Sbjct: 599 IYLKQVGLITFMALVGSFVPAEEAEIGVIDAIFTRIHSCESISLGLSTFMIDLNQVAKAV 658
Query: 826 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG--CLGI-VSTHLHGIFSLPLKI 882
T SLVLIDE +GT + G + +++ +G C + V+T+ + L L
Sbjct: 659 NNATEHSLVLIDEFGKGTNSVDGLALLAAVLRHWLALGPSCPHVFVATNFLSLVQLQLLP 718
Query: 883 KNAAYKAMGTEYL-DGQT-VPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 935
+ + + E DG+ V ++L G+ S A TA + G+P+ +I R +++
Sbjct: 719 QGPLVQYLTMETCEDGEDLVFFYQLCQGVASASHASHTAAQAGLPDPLIARGKEV 773
>UNIPROTKB|Q720J7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:265669 "Listeria
monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_013840.1 ProteinModelPortal:Q720J7 STRING:Q720J7
GeneID:2799326 KEGG:lmf:LMOf2365_1241 PATRIC:20323712
Uniprot:Q720J7
Length = 785
Score = 231 (86.4 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 76/279 (27%), Positives = 135/279 (48%)
Query: 661 AKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIEL 720
AK K ++ +L +S+ L IN + + +L +FA G+ K V P L D
Sbjct: 242 AKEKQEIERILAEISASLAAWINEIHHNTFILGRFDFIFAKARFGKAMKAVTPHLSD--- 298
Query: 721 DGANCLKMNGLSPYWFDAAEGSA--VHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLG 778
A + + DAA+ A ++ D ++ ++TGPN GGK+ L+++ +L+
Sbjct: 299 --AGVVHLIAARHPLLDAAKVVANDIYLGEDFTTI-VITGPNTGGKTITLKTLGLLTLMA 355
Query: 779 ICGLMVPA-ESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLID 837
GL +PA E ++I F+ + + S S+F M+ I SI+ +SL+L D
Sbjct: 356 QSGLQIPAQEDSTIAVFEHVFADIGDEQSIEQSLSTFSSHMTNIVSILGNVNQKSLILYD 415
Query: 838 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDG 897
E+ GT+ +G +A +I++ G + +TH + + N + + +
Sbjct: 416 ELGAGTDPQEGAALAIAILDASHAKGASVVATTHYPELKAYGY---NRVHATNASVEFNV 472
Query: 898 QTV-PTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 935
+T+ PT+KL+ G+ S AF+ ++R G+ E II A L
Sbjct: 473 ETLSPTYKLLIGVPGRSNAFDISRRLGLSENIITEARSL 511
Score = 40 (19.1 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 602 EAVW-FKGKKFRPTVWASTP-GEEQIKQLKPAVD 633
EA+ F K + T +AS+ GE+ I +L PA D
Sbjct: 6 EAILEFDKIKKQLTEFASSSLGEQAILELAPATD 39
>SGD|S000001162 [details] [associations]
symbol:MSH1 "DNA-binding protein involved in repair of
mitochondrial DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0043570
"maintenance of DNA repeat elements" evidence=IRD] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0043504 "mitochondrial DNA
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IDA] [GO:0000002 "mitochondrial genome maintenance"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001162 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BK006934 GO:GO:0006298 EMBL:U00059 GO:GO:0008094
GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150 EMBL:M84169
PIR:S48962 RefSeq:NP_011988.1 ProteinModelPortal:P25846 SMR:P25846
DIP:DIP-6433N IntAct:P25846 MINT:MINT-683422 STRING:P25846
PaxDb:P25846 EnsemblFungi:YHR120W GeneID:856520 KEGG:sce:YHR120W
CYGD:YHR120w OMA:KERLLNP NextBio:982278 Genevestigator:P25846
GermOnline:YHR120W GO:GO:0032300 GO:GO:0032139 Uniprot:P25846
Length = 959
Score = 209 (78.6 bits), Expect = 3.7e-14, Sum P(3) = 3.7e-14
Identities = 65/197 (32%), Positives = 93/197 (47%)
Query: 752 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 811
+L+++TGPN GGKS+ LR +L G VP A + D + + S D +
Sbjct: 765 NLWVITGPNMGGKSTFLRQNAIIVILAQIGCFVPCSKARVGIVDKLFSRVGSADDLYNEM 824
Query: 812 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE-TLDNIGCLGIVST 870
S+F VEM E I+ T RSL ++DEI RGT +G IA + ++ L+N C + +T
Sbjct: 825 STFMVEMIETSFILQGATERSLAILDEIGRGTSGKEGISIAYATLKYLLENNQCRTLFAT 884
Query: 871 HLHGIFSLPLK--IKNAAYKAMGTE---YLDGQT-------VPTWKLVDGICRESLAFET 918
H F LK I N K M + Y G T KL GIC +S A
Sbjct: 885 H----FGQELKQIIDNKCSKGMSEKVKFYQSGITDLGGNNFCYNHKLKPGICTKSDAIRV 940
Query: 919 AKREGVPETIIQRAEDL 935
A+ G P ++ A ++
Sbjct: 941 AELAGFPMEALKEAREI 957
Score = 71 (30.1 bits), Expect = 3.7e-14, Sum P(3) = 3.7e-14
Identities = 30/85 (35%), Positives = 41/85 (48%)
Query: 142 VLLCRVGDFYEAIGIDACILVEYAG-LNPFGGLRPES---IPKAGCPVVNLRQTLDDLTR 197
V+L ++G FYE A + YA LN R S +P AG PV L + L L
Sbjct: 97 VVLTQMGSFYELYFEQA---IRYAPELNISLTNRAYSHGKVPFAGFPVHQLSRHLKMLVN 153
Query: 198 N-GYSVCIVEEVQGPTQARSRKSRF 221
N GYSV I E+ + A + ++F
Sbjct: 154 NCGYSVTIAEQFKKKDVADNEANKF 178
Score = 41 (19.5 bits), Expect = 3.7e-14, Sum P(3) = 3.7e-14
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 436 SIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSEL 476
S+ + T ++ +L E+ + E KN++D+IL EL
Sbjct: 487 SLMKATLKSQITQLTESLNFE----KNLIDDILKFLNEEEL 523
>UNIPROTKB|A2BEX4 [details] [associations]
symbol:MSH5-SAPCD1 "MutS protein homolog 5" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX4 Ensembl:ENST00000414514
Ensembl:ENST00000414810 Ensembl:ENST00000437726
Ensembl:ENST00000454820 Ensembl:ENST00000466318
Ensembl:ENST00000495073 HGNC:HGNC:41994 Uniprot:A2BEX4
Length = 496
Score = 216 (81.1 bits), Expect = 4.3e-14, P = 4.3e-14
Identities = 55/186 (29%), Positives = 99/186 (53%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + + G VPAE A I DAI + S +S + G S+F
Sbjct: 251 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 310
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG--CLGI-VSTH 871
++++++ V T++SLVLIDE +GT T G + +++ G C I V+T+
Sbjct: 311 MIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATN 370
Query: 872 LHGIFSLPLKIKNAAYKAMGTEYL-DGQT-VPTWKLVDGICRESLAFETAKREGVPETII 929
+ L L + + + E DG V +++ +G+ + S A TA + G+P+ ++
Sbjct: 371 FLSLVQLQLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLV 430
Query: 930 QRAEDL 935
R +++
Sbjct: 431 ARGKEV 436
>UNIPROTKB|A2ABF0 [details] [associations]
symbol:MSH5 "cDNA FLJ39914 fis, clone SPLEN2018732, highly
similar to MutS protein homolog 5" species:9606 "Homo sapiens"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:BX248244 EMBL:CR759787 GO:GO:0006298
GO:GO:0030983 EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334
EMBL:CR759915 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AK097233
IPI:IPI00798222 SMR:A2ABF0 STRING:A2ABF0 Ensembl:ENST00000395853
Ensembl:ENST00000414412 Ensembl:ENST00000430216
Ensembl:ENST00000436004 Ensembl:ENST00000439816
Ensembl:ENST00000448169 HOGENOM:HOG000231215 Uniprot:A2ABF0
Length = 508
Score = 216 (81.1 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 55/186 (29%), Positives = 99/186 (53%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + + G VPAE A I DAI + S +S + G S+F
Sbjct: 263 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 322
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG--CLGI-VSTH 871
++++++ V T++SLVLIDE +GT T G + +++ G C I V+T+
Sbjct: 323 MIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATN 382
Query: 872 LHGIFSLPLKIKNAAYKAMGTEYL-DGQT-VPTWKLVDGICRESLAFETAKREGVPETII 929
+ L L + + + E DG V +++ +G+ + S A TA + G+P+ ++
Sbjct: 383 FLSLVQLQLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLV 442
Query: 930 QRAEDL 935
R +++
Sbjct: 443 ARGKEV 448
>UNIPROTKB|F1N8B7 [details] [associations]
symbol:F1N8B7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0000795 "synaptonemal complex"
evidence=IEA] [GO:0007129 "synapsis" evidence=IEA] [GO:0007292
"female gamete generation" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:AADN02049793 IPI:IPI00814446
Ensembl:ENSGALT00000004315 Uniprot:F1N8B7
Length = 791
Score = 219 (82.2 bits), Expect = 5.0e-14, P = 5.0e-14
Identities = 59/187 (31%), Positives = 95/187 (50%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + G VPA A I D I + + +S + G S+F
Sbjct: 546 IITGPNSSGKSIYLKQVGLIIFMALIGSYVPAAEAEIGAIDGIYTRIHTRESVSVGLSTF 605
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG--CLGI-VSTH 871
++++++ V T RSLVLIDE +GT T G + ++++ N G C + VST+
Sbjct: 606 MIDLNQVAKAVNNATERSLVLIDEFGKGTNTLDGLALLAAVLKYWINQGTQCPQVFVSTN 665
Query: 872 LHGIFSLPLKIKNAA--YKAMGTEYLDG-QTVPTWKLVDGICRESLAFETAKREGVPETI 928
H + L L Y AM T + DG + V +++ G+ S A A G+P I
Sbjct: 666 FHSLMQLELLPDTPLLEYLAMET-HQDGDELVFFYQIKQGVSTVSHAANIAALAGMPAKI 724
Query: 929 IQRAEDL 935
I+R ++
Sbjct: 725 IERGVEV 731
>UNIPROTKB|B4DZX3 [details] [associations]
symbol:MSH5 "cDNA FLJ54211, highly similar to MutS protein
homolog 5" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AL662899
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:AK303129
IPI:IPI01015677 SMR:B4DZX3 STRING:B4DZX3 Ensembl:ENST00000431848
Ensembl:ENST00000547775 Ensembl:ENST00000549618
Ensembl:ENST00000551879 Uniprot:B4DZX3
Length = 533
Score = 216 (81.1 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 55/186 (29%), Positives = 99/186 (53%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + + G VPAE A I DAI + S +S + G S+F
Sbjct: 288 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 347
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG--CLGI-VSTH 871
++++++ V T++SLVLIDE +GT T G + +++ G C I V+T+
Sbjct: 348 MIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATN 407
Query: 872 LHGIFSLPLKIKNAAYKAMGTEYL-DGQT-VPTWKLVDGICRESLAFETAKREGVPETII 929
+ L L + + + E DG V +++ +G+ + S A TA + G+P+ ++
Sbjct: 408 FLSLVQLQLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLV 467
Query: 930 QRAEDL 935
R +++
Sbjct: 468 ARGKEV 473
>UNIPROTKB|Q5B374 [details] [associations]
symbol:AN5006.2 "Putative uncharacterized protein"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007720 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624 Pfam:PF05024
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0016021 GO:GO:0005524
GO:GO:0003684 GO:GO:0030466 GO:GO:0006506 EMBL:AACD01000084
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 GO:GO:0017176
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
OrthoDB:EOG4S7NZ5 GO:GO:0000735 RefSeq:XP_662610.1
ProteinModelPortal:Q5B374 STRING:Q5B374 GeneID:2872806
KEGG:ani:AN5006.2 Uniprot:Q5B374
Length = 1644
Score = 240 (89.5 bits), Expect = 6.1e-14, Sum P(4) = 6.1e-14
Identities = 54/141 (38%), Positives = 79/141 (56%)
Query: 749 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 808
D S ++TGPN GGKS+ +R I +L+ G VP A + FD I+ + + DS
Sbjct: 656 DESSFLIITGPNMGGKSTYIRMIGVIALMAQIGCFVPCTEAELTIFDCILARVGASDSQL 715
Query: 809 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DNIGCLGI 867
G S+F EM E +I+ + TS SL++IDE+ RGT T G +A +I E + I C G+
Sbjct: 716 KGVSTFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGL 775
Query: 868 VSTHLHGIFSL----PLKIKN 884
+TH H + +L P +KN
Sbjct: 776 FATHFHELTTLADRYPKSVKN 796
Score = 47 (21.6 bits), Expect = 6.1e-14, Sum P(4) = 6.1e-14
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 903 WKLVDGICRESLAFETAKREGVPETII----QRAEDL 935
+++ GIC +S A+ PE ++ Q+AE+L
Sbjct: 828 YRVEPGICDQSFGIHVAELVRFPEKVVNMARQKAEEL 864
Score = 45 (20.9 bits), Expect = 6.1e-14, Sum P(4) = 6.1e-14
Identities = 24/103 (23%), Positives = 47/103 (45%)
Query: 436 SIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKI 495
SIP+ L K + ++AN + R+ V L + NS LE +MD + T L+
Sbjct: 378 SIPDLYRLAKRFQRKQANLEDVVRVYQVAIR-LPGFVNS-----LENVMDEEY-QTPLET 430
Query: 496 DFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFED 538
++ + + ++ EM+ + D + +++ I F+D
Sbjct: 431 EYTAKLRNHSASLAKLEEMVETTVDLDA-LENHEFIIKPEFDD 472
Score = 40 (19.1 bits), Expect = 6.1e-14, Sum P(4) = 6.1e-14
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 935 LYIACGVNCVMI--AAREQPPPSIIGASCVYVMLRPDKKL 972
++ CG + + + + + PP+ AS + V RP K+
Sbjct: 1046 IFSLCGRSSMHVLGSTNMRDPPTAFNASHLIVTTRPSCKV 1085
>UNIPROTKB|O43196 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IRD] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0051026
"chiasma assembly" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007136 "meiotic prophase II" evidence=TAS]
[GO:0007126 "meiosis" evidence=TAS] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 EMBL:BA000025 EMBL:CH471081 EMBL:AF129756
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 Reactome:REACT_111183
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
EMBL:AL662834 GO:GO:0045143 EMBL:AF134726 EMBL:CR936239
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 EMBL:CR925765
KO:K08741 OMA:NDLVFFY EMBL:AF048986 EMBL:AF048991 EMBL:AF048988
EMBL:AF048989 EMBL:AF048990 EMBL:AF034759 EMBL:AF070071
EMBL:AF070079 EMBL:AF070072 EMBL:AF070073 EMBL:AF070074
EMBL:AF070075 EMBL:AF070076 EMBL:AF070077 EMBL:AF070078
EMBL:BT007200 EMBL:AY943816 EMBL:BC001358 EMBL:BC002498
EMBL:BC041031 IPI:IPI00172593 IPI:IPI00219362 IPI:IPI00297780
IPI:IPI00647584 RefSeq:NP_002432.1 RefSeq:NP_079535.4
RefSeq:NP_751897.1 RefSeq:NP_751898.1 UniGene:Hs.647011
ProteinModelPortal:O43196 SMR:O43196 IntAct:O43196 STRING:O43196
PhosphoSite:O43196 PRIDE:O43196 DNASU:4439 Ensembl:ENST00000375703
Ensembl:ENST00000375740 Ensembl:ENST00000375742
Ensembl:ENST00000375750 Ensembl:ENST00000375755
Ensembl:ENST00000416549 Ensembl:ENST00000419269
Ensembl:ENST00000427735 Ensembl:ENST00000435700
Ensembl:ENST00000436192 Ensembl:ENST00000441395
Ensembl:ENST00000441401 Ensembl:ENST00000448617
Ensembl:ENST00000456839 Ensembl:ENST00000457742
Ensembl:ENST00000497157 Ensembl:ENST00000534153
Ensembl:ENST00000578225 GeneID:4439 KEGG:hsa:4439 UCSC:uc003nwu.2
UCSC:uc003nwv.2 UCSC:uc003nwx.2 CTD:4439 GeneCards:GC06P031707
H-InvDB:HIX0165917 H-InvDB:HIX0166738 H-InvDB:HIX0167237
H-InvDB:HIX0167372 HGNC:HGNC:7328 MIM:603382 neXtProt:NX_O43196
PharmGKB:PA31136 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z
PhylomeDB:O43196 ChiTaRS:MSH5 GenomeRNAi:4439 NextBio:17301
ArrayExpress:O43196 Bgee:O43196 CleanEx:HS_MSH5
Genevestigator:O43196 GermOnline:ENSG00000204410 GO:GO:0007136
Uniprot:O43196
Length = 834
Score = 216 (81.1 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 55/186 (29%), Positives = 99/186 (53%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + + G VPAE A I DAI + S +S + G S+F
Sbjct: 589 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 648
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG--CLGI-VSTH 871
++++++ V T++SLVLIDE +GT T G + +++ G C I V+T+
Sbjct: 649 MIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATN 708
Query: 872 LHGIFSLPLKIKNAAYKAMGTEYL-DGQT-VPTWKLVDGICRESLAFETAKREGVPETII 929
+ L L + + + E DG V +++ +G+ + S A TA + G+P+ ++
Sbjct: 709 FLSLVQLQLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLV 768
Query: 930 QRAEDL 935
R +++
Sbjct: 769 ARGKEV 774
>UNIPROTKB|Q759V4 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:284811 "Ashbya gossypii ATCC 10895" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0005737 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 EMBL:AE016817 GenomeReviews:AE016817_GR
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 HSSP:Q56215
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
RefSeq:NP_984265.1 ProteinModelPortal:Q759V4 STRING:Q759V4
EnsemblFungi:AAS52089 GeneID:4620427 KEGG:ago:AGOS_ADR168C
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M PhylomeDB:Q759V4
Uniprot:Q759V4
Length = 1032
Score = 227 (85.0 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 64/220 (29%), Positives = 110/220 (50%)
Query: 725 CLKM-NGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI 779
C+ + NG +P ++ + + N V++ + + ++TGPN GGKSS +R + ++
Sbjct: 759 CINVINGRNPI-IESLDVRYMPNDVNLNREGKKIMIITGPNMGGKSSYIRQVALLVIMAQ 817
Query: 780 CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEI 839
G VPA+ A FD I + +YD+ S+F++EM+E+ I+ ++T SL+L+DE+
Sbjct: 818 IGCYVPAQEAEFSIFDQIFTRIGAYDNLLRNDSTFKIEMTEMVQILRSSTENSLLLLDEV 877
Query: 840 CRGTETAKGTCIAGSIIE---TLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLD 896
RGT T G I+ +++ L N L + TH + S+ I + + E
Sbjct: 878 GRGTGTHDGISISYALLRYFIELHNACPLILFITHYASLGSIRSPILGNYHMSYIEEKRP 937
Query: 897 GQTVPT----WKLVDGICRESLAFETAKREGVPETIIQRA 932
G+ P+ +KL +G S AK + II RA
Sbjct: 938 GENWPSVVFLYKLKEGRAHNSYGLNVAKLADIQTGIINRA 977
Score = 41 (19.5 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 592 KGEILYAREHEAVWFKGKKFRPTVWASTP--GEEQIKQLKPAVDSKGRKVGEEWFSTL 647
KG +L+ +H + + + W + P +QI+Q AV +VG + +L
Sbjct: 443 KGSLLWVLDHTRTNYGLRNLKN--WIAKPLINIDQIQQRLDAVQCISTEVGNIFIESL 498
>UNIPROTKB|E1C1F8 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074949 EMBL:AADN02047884 EMBL:AADN02047885
EMBL:AADN02047886 EMBL:AADN02047887 EMBL:AADN02047888
EMBL:AADN02047889 IPI:IPI00586936 Ensembl:ENSGALT00000025135
OMA:LLLDCQR Uniprot:E1C1F8
Length = 598
Score = 212 (79.7 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 56/189 (29%), Positives = 97/189 (51%)
Query: 698 LFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSA---VHNTVDM---- 750
LF+ ++ + P +KD + + + NG P D G V NT ++
Sbjct: 293 LFSLAQAAKQGDYCRPVVKDNQQE---IIIKNGRHPV-IDVLLGEQDQYVPNTTNLSRDG 348
Query: 751 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 810
+ + ++TGPN GGKSS ++ + +++ G VPAE +++ D I M + D+ G
Sbjct: 349 ERVMIITGPNMGGKSSYIKQVALITVMAQIGSYVPAEESTVGIVDGIFTRMGAADNIYKG 408
Query: 811 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET-LDNIGCLGIVS 869
+S+F E+++ I+ TSRSLV++DE+ RGT T G IA + +E + ++ L +
Sbjct: 409 RSTFMEELTDTAEIIRRATSRSLVILDELGRGTSTHDGIAIAYATLEHFITDVESLTLFV 468
Query: 870 THLHGIFSL 878
TH + L
Sbjct: 469 THYPSVCEL 477
>SGD|S000000688 [details] [associations]
symbol:MSH3 "Mismatch repair protein" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IEA;IDA] [GO:0000735 "removal of
nonhomologous ends" evidence=IGI;IMP;TAS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0032135 "DNA insertion or deletion
binding" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000000688 GO:GO:0005524 GO:GO:0005737
GO:GO:0003684 EMBL:X59720 EMBL:BK006937 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032135 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M EMBL:X64954 EMBL:M96250
PIR:S19508 RefSeq:NP_010016.2 ProteinModelPortal:P25336 SMR:P25336
DIP:DIP-2422N IntAct:P25336 MINT:MINT-633647 STRING:P25336
PaxDb:P25336 PeptideAtlas:P25336 PRIDE:P25336 EnsemblFungi:YCR092C
GeneID:850454 KEGG:sce:YCR092C CYGD:YCR092c
GeneTree:ENSGT00550000074949 NextBio:966078 Genevestigator:P25336
GermOnline:YCR092C Uniprot:P25336
Length = 1018
Score = 216 (81.1 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 59/188 (31%), Positives = 98/188 (52%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GGKSS +R + +++ G VPAE + F+ ++ + ++D +G S+F
Sbjct: 788 IITGPNMGGKSSYIRQVALLTIMAQIGSFVPAEEIRLSIFENVLTRIGAHDDIINGDSTF 847
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-C-LGIVSTHL 872
+VEM +I I+ RSL+L+DE+ RGT T G I+ ++I+ + C L + +TH
Sbjct: 848 KVEMLDILHILKNCNKRSLLLLDEVGRGTGTHDGIAISYALIKYFSELSDCPLILFTTH- 906
Query: 873 HGIFSLPLKIKNAAYKAMGTEYLDGQ-TVPTW-------KLVDGICRESLAFETAKREGV 924
F + +IK+ + +Y++ Q T W KL G+ S AK +
Sbjct: 907 ---FPMLGEIKSPLIRNYHMDYVEEQKTGEDWMSVIFLYKLKKGLTYNSYGMNVAKLARL 963
Query: 925 PETIIQRA 932
+ II RA
Sbjct: 964 DKDIINRA 971
Score = 49 (22.3 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 32/119 (26%), Positives = 51/119 (42%)
Query: 401 GLPILYVRDLLLNP--PAYEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFC 458
GL +L R+ +L P ++I + AI + S++ SI F L ++L NH
Sbjct: 452 GLRML--REWILKPLVDVHQIEERLDAIECITSEINNSI-FFESLNQML-----NHTP-- 501
Query: 459 RIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISL 517
+ L+ I MYG + E+ L T K+ L E + + RIG+ L
Sbjct: 502 DLLRTLNRI--MYGTTSRKEVYFYLKQITSFVDHFKMHQSYLSEHFKSSDGRIGKQSPL 558
Score = 48 (22.0 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 29/104 (27%), Positives = 46/104 (44%)
Query: 118 KNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACIL--VEYAGLNPFGGLR- 174
K+ + K L+ ++ K +VL+ RVG Y+ DA + + + L P G L
Sbjct: 126 KSPTAKLTPLDKQVKDLKMHHRDKVLVIRVGYKYKCFAEDAVTVSRILHIKLVP-GKLTI 184
Query: 175 PESIPK-------AGC--PVVNLRQTLDDLTRNGYSVCIVEEVQ 209
ES P+ A C P V L L+ L + V +VE+ +
Sbjct: 185 DESNPQDCNHRQFAYCSFPDVRLNVHLERLVHHNLKVAVVEQAE 228
Score = 45 (20.9 bits), Expect = 7.3e-13, Sum P(3) = 7.3e-13
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 406 YVRDLLLNPPA--Y-EIASTIQAICKLMSKVTCSIPEFTCLVKL 446
Y +DLL+ Y E + I A + K+T ++ ++ C++ L
Sbjct: 691 YYKDLLIRESELQYKEFLNKITAEYTELRKITLNLAQYDCILSL 734
Score = 39 (18.8 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 606 FKGKKFRPTVWAS-TPGEEQIKQLK 629
F KK R + A TP ++Q+K LK
Sbjct: 119 FVKKKARKSPTAKLTPLDKQVKDLK 143
>DICTYBASE|DDB_G0283957 [details] [associations]
symbol:msh4 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0000228
"nuclear chromosome" evidence=ISS] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0283957 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
EMBL:AAFI02000058 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 KO:K08740 SUPFAM:SSF48334
SUPFAM:SSF53150 OMA:MSGKSVY RefSeq:XP_638826.1
ProteinModelPortal:Q54QB8 EnsemblProtists:DDB0229912 GeneID:8624350
KEGG:ddi:DDB_G0283957 InParanoid:Q54QB8 ProtClustDB:CLSZ2728957
Uniprot:Q54QB8
Length = 1041
Score = 224 (83.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 58/186 (31%), Positives = 91/186 (48%)
Query: 752 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 811
S L+ G N GKS+ ++ + +++ G +PAE A++P D I+ + + D+
Sbjct: 790 SFQLIHGCNMSGKSTYIQQVALLTIVAHIGYFLPAEFATVPIVDQIISRLGTSDNIQSNA 849
Query: 812 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 871
S+F EM EI I+ TT SLV+IDE+ RGT G+ IA SI E L IGC + TH
Sbjct: 850 STFMTEMKEISYILENTTESSLVIIDELGRGTSNMDGSSIAWSISEHLSMIGCYTLFVTH 909
Query: 872 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVP-TWKLVDGICR-ESLAFETAKREGVPETII 929
+ +L N D + + +G+ +S ETA+ G+ +I
Sbjct: 910 YQQLLNLATFYPNIRVYHFQVSKDDSSGLKYNYLFSEGVSSIDSYGVETAELAGIDSKVI 969
Query: 930 QRAEDL 935
Q A+ +
Sbjct: 970 QSAKTI 975
Score = 42 (19.8 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 417 YEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFC-RIK 461
Y + I I K S+ F L+K LE ++ C RIK
Sbjct: 343 YCLIDKISIIEKFTKDKVLSLSSFNALIKYLEQDGIMFVKNCIRIK 388
>RGD|1303008 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=ISO;IBA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0007127 "meiosis I"
evidence=ISO] [GO:0007129 "synapsis" evidence=ISO] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0007292
"female gamete generation" evidence=IEA;ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0008150
"biological_process" evidence=ND] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IRD] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 RGD:1303008 GO:GO:0005524 EMBL:BX883045
GO:GO:0006298 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 CTD:4439 HOVERGEN:HBG001449
OrthoDB:EOG4WSW8Z HOGENOM:HOG000006649 EMBL:BC083904
IPI:IPI00421996 RefSeq:NP_997701.2 UniGene:Rn.44043
ProteinModelPortal:Q6MG62 STRING:Q6MG62 PRIDE:Q6MG62
Ensembl:ENSRNOT00000060762 GeneID:294252 KEGG:rno:294252
UCSC:RGD:1303008 InParanoid:Q6MG62 NextBio:637830
Genevestigator:Q6MG62 GermOnline:ENSRNOG00000000857 Uniprot:Q6MG62
Length = 831
Score = 212 (79.7 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 57/192 (29%), Positives = 98/192 (51%)
Query: 749 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 808
D + ++TGPN GKS L+ + + + + G VPAE A I DAI + S +S +
Sbjct: 580 DQGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGVIDAIFTRIHSCESIS 639
Query: 809 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG--CLG 866
G S+F ++++++ V T SLVLIDE +GT + G + +++ +G C
Sbjct: 640 LGLSTFMIDLNQVAKAVNNATEHSLVLIDEFGKGTNSVDGLALLTAVLRHWLALGPSCPH 699
Query: 867 I-VSTHLHGIFSLPLKIKNAAYKAMGTEYL-DGQT-VPTWKLVDGICRESLAFETAKREG 923
I V+T+ + L L + + + E DG V ++L G+ S A TA + G
Sbjct: 700 IFVATNFLSLVQLQLLPQGPLVQYLTMETCEDGNDLVFFYQLCHGVASASHASYTAAQAG 759
Query: 924 VPETIIQRAEDL 935
+P+ +I R +++
Sbjct: 760 LPDPLIARGKEV 771
>TIGR_CMR|GSU_0547 [details] [associations]
symbol:GSU_0547 "MutS2 family protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 SMART:SM00463
PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:NP_951605.1 ProteinModelPortal:Q74FQ9 GeneID:2685958
KEGG:gsu:GSU0547 PATRIC:22023851 ProtClustDB:CLSK827917
BioCyc:GSUL243231:GH27-531-MONOMER Uniprot:Q74FQ9
Length = 792
Score = 220 (82.5 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 56/179 (31%), Positives = 95/179 (53%)
Query: 753 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES-ASIPYFDAIMLHMKSYDSPADGK 811
+ ++TGPN GGK+ L++ L+ + G+ VPA S +S P +++ + S
Sbjct: 343 VMVITGPNAGGKTISLKTTGLLHLMALAGIPVPAASTSSFPLISDLLVDIGDEQSIEQSL 402
Query: 812 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 871
S+F +S I I+ R++VL+DE+ GTE +G I+ +++ L + G L I +TH
Sbjct: 403 STFSAHVSNIAGILERADRRTVVLLDELGTGTEPVQGAAISCAVLADLQDKGALVIATTH 462
Query: 872 LHGIFSLPLKIKNAAYKAMGTEYLDGQTV-PTWKLVDGICRESLAFETAKREGVPETII 929
L I K +M E+ D QT+ P ++L G +S A E A+R G+P+ ++
Sbjct: 463 LTDIVGFVHKRDGMVNASM--EF-DRQTLTPLYRLTVGEPGQSHALEIARRYGLPDRVV 518
Score = 42 (19.8 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 547 VKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILY 597
V+R EI + LSL ED P+++ ++ A L + +L+
Sbjct: 45 VRRFGQVDEIRRLRQLGIDLSLRSFEDIAPLLAAVRPDGAVLDPTELVVLF 95
>UNIPROTKB|A2BEX2 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX2 Ensembl:ENST00000426512
Ensembl:ENST00000442688 Uniprot:A2BEX2
Length = 497
Score = 207 (77.9 bits), Expect = 4.2e-13, P = 4.2e-13
Identities = 55/187 (29%), Positives = 99/187 (52%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + + G VPAE A I DAI + S +S + G S+F
Sbjct: 251 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 310
Query: 815 QVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG--CLGI-VST 870
+++++ + V T++SLVLIDE +GT T G + +++ G C I V+T
Sbjct: 311 MIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVAT 370
Query: 871 HLHGIFSLPLKIKNAAYKAMGTEYL-DGQT-VPTWKLVDGICRESLAFETAKREGVPETI 928
+ + L L + + + E DG V +++ +G+ + S A TA + G+P+ +
Sbjct: 371 NFLSLVQLQLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKL 430
Query: 929 IQRAEDL 935
+ R +++
Sbjct: 431 VARGKEV 437
>UNIPROTKB|A8HYR5 [details] [associations]
symbol:MSH1 "DNA mismatch repair MutS protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR016151 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0008094
EMBL:DS496110 GO:GO:0000710 Gene3D:3.40.1170.10 GO:GO:0032300
GO:GO:0000404 eggNOG:NOG330919 RefSeq:XP_001696421.1
ProteinModelPortal:A8HYR5 EnsemblPlants:EDP08398 GeneID:5722205
KEGG:cre:CHLREDRAFT_142479 Uniprot:A8HYR5
Length = 1041
Score = 118 (46.6 bits), Expect = 5.3e-13, Sum P(5) = 5.3e-13
Identities = 57/176 (32%), Positives = 75/176 (42%)
Query: 94 RKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEA 153
R+P L+ L + + LGL L+ S + E L K K V+L R A
Sbjct: 4 RRPELSGLLGSLDWEHPLGL-AKLRAKSRIQ--CYGEFLSAKKKHSTAVVLVR------A 54
Query: 154 IGIDACILVEYAGLNPFGGLRPESIPKAGCPVV--NLRQTLDDLTRNGYSVCIVEEVQ-- 209
+G DA +L ++ GLNP L + KAG P LRQ L+ L G+ V IVEEV
Sbjct: 55 VGFDALVLCQHCGLNPMTPL--SGVAKAGFPKAPSTLRQQLNRLIGAGFVVAIVEEVGDL 112
Query: 210 --------GPTQARSRKSRFISGHAHPGSPY-VFG-----LVGIDHDLDFPEPMPV 251
G A K R + SPY +FG V +D D P P+ V
Sbjct: 113 ARGSGRAGGGFSALPTKVRQLMPLVSASSPYYLFGDVEDEAVAVD-DTPLPRPITV 167
Score = 117 (46.2 bits), Expect = 5.3e-13, Sum P(5) = 5.3e-13
Identities = 39/124 (31%), Positives = 61/124 (49%)
Query: 769 RSICAASLLGICGLM----VPAESASIPYFDAIMLHMKSYDSPADGKS-SFQVEMSEIRS 823
R+ + LL + M V AE P+ DA+ + + A GK + E +
Sbjct: 532 RAALVSELLVLAAAMEKARVAAEVRLAPHDDAVWVRLVG----AGGKRLTGAAERNAQEQ 587
Query: 824 IVTA----TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL- 878
+ TA S SLVL+DE+ +GTE G+ +A +++E L G G+ +THLH + L
Sbjct: 588 VRTAGGLELRSSSLVLLDELGKGTEVVAGSALAAAVVEDLVAAGAAGVFATHLHDLVYLL 647
Query: 879 -PLK 881
PL+
Sbjct: 648 RPLE 651
Score = 78 (32.5 bits), Expect = 5.3e-13, Sum P(5) = 5.3e-13
Identities = 21/60 (35%), Positives = 26/60 (43%)
Query: 368 PRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAIC 427
P P L T TQ+G G+P LL L + R LLL PP A I+ +C
Sbjct: 257 PLPPSLSTVTQLGLGGARGVPSLLAAALGDGVPAAVRDWFRLLLLLPPPPTAAEDIRVVC 316
Score = 51 (23.0 bits), Expect = 5.3e-13, Sum P(5) = 5.3e-13
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 974 IGQTDDLDGRIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIAD 1032
IG +D + G G QSA ++ G S A IE LI ++ + G+ L++ D
Sbjct: 925 IGHIHWVDADLVPAPGHSG-QSAVYVLREAGGSSAAKDIEAALIRRVAAAGWALSSDHD 982
Score = 37 (18.1 bits), Expect = 5.3e-13, Sum P(5) = 5.3e-13
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 614 TVWASTPGEEQIKQLKPAVDS 634
T WA P +E + + A ++
Sbjct: 397 TAWAEVPPQELANKCRAAAEA 417
>UNIPROTKB|F1LQM8 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1563954 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08736 CTD:4437
GeneTree:ENSGT00550000074949 IPI:IPI00196502 RefSeq:NP_001178886.1
UniGene:Rn.162551 Ensembl:ENSRNOT00000018449 GeneID:499505
KEGG:rno:499505 NextBio:703076 ArrayExpress:F1LQM8 Uniprot:F1LQM8
Length = 1105
Score = 210 (79.0 bits), Expect = 7.6e-13, P = 7.6e-13
Identities = 59/200 (29%), Positives = 99/200 (49%)
Query: 749 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 808
D + + ++TGPN GGKSS ++ + ++ G VPAE A+I D I + D+
Sbjct: 845 DSERVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRRGAADNIY 904
Query: 809 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET-LDNIGCLGI 867
G+S+F E+++ I+ T RSLV++DE+ RGT T G IA + +E + ++ L +
Sbjct: 905 KGRSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTL 964
Query: 868 VSTHLHGIFSL----PLKIKNAAYKAM----GTEYLDG--QTVPT-----WKLVDGICRE 912
TH + L P ++ N + G++ G + +P +++ GI
Sbjct: 965 FVTHYPPVCELEKRYPEQVGNYHMGFLVNEDGSKQDSGDMEQMPDSVTFLYQITRGIAAR 1024
Query: 913 SLAFETAKREGVPETIIQRA 932
S AK VP I+Q+A
Sbjct: 1025 SYGLNVAKLADVPREILQKA 1044
>TAIR|locus:2095097 [details] [associations]
symbol:MSH2 "AT3G18524" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=ISS;IDA] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP catabolic
process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS;IMP] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0032302 "MutSbeta complex" evidence=IEA;IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IMP] [GO:0006290 "pyrimidine dimer repair"
evidence=IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016570 "histone modification" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0031507 "heterochromatin assembly"
evidence=RCA] [GO:0045787 "positive regulation of cell cycle"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005886 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003684 EMBL:AB026658 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 EMBL:AP001303
GO:GO:0008094 GO:GO:0006290 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 EMBL:AF026549 EMBL:AF109243
EMBL:AF002706 EMBL:AF003005 EMBL:U87911 IPI:IPI00526204
RefSeq:NP_566804.3 UniGene:At.10475 ProteinModelPortal:O24617
SMR:O24617 STRING:O24617 PaxDb:O24617 PRIDE:O24617
EnsemblPlants:AT3G18524.1 GeneID:821383 KEGG:ath:AT3G18524
TAIR:At3g18524 HOGENOM:HOG000196498 InParanoid:O24617 KO:K08735
OMA:WAISEHI PhylomeDB:O24617 ProtClustDB:CLSN2680872
Genevestigator:O24617 GermOnline:AT3G18524 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 Uniprot:O24617
Length = 937
Score = 208 (78.3 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 55/190 (28%), Positives = 93/190 (48%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GGKS+ +R + L+ G VP + ASI D I + + D G S+F
Sbjct: 663 IVTGPNMGGKSTFIRQVGVIVLMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTF 722
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVSTHLH 873
EM E SI+ + +SL++IDE+ RGT T G +A +I E L + + +TH H
Sbjct: 723 MQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKRAPTLFATHFH 782
Query: 874 GIFSLPLKIKNAAYKAMG------TEYLDGQT---VPTWKLVDGICRESLAFETAKREGV 924
+ +L + +G + ++D ++ +K+ G C +S A+
Sbjct: 783 ELTALAQANSEVSGNTVGVANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFANF 842
Query: 925 PETIIQRAED 934
PE+++ A +
Sbjct: 843 PESVVALARE 852
>UNIPROTKB|F1P9S9 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:KRTKSIY
GeneTree:ENSGT00550000074949 EMBL:AAEX03002106
Ensembl:ENSCAFT00000013983 Uniprot:F1P9S9
Length = 1058
Score = 207 (77.9 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 59/199 (29%), Positives = 97/199 (48%)
Query: 749 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 808
D + + ++TGPN GGKSS ++ + +++ G VPAE A+I D I M + D+
Sbjct: 810 DSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIY 869
Query: 809 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET-LDNIGCLGI 867
G+S+F E+ + I+ TS+SLV++DE+ RGT T G IA + +E + ++ L +
Sbjct: 870 KGQSTFMEELMDTAEIIRQATSQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTL 929
Query: 868 VSTHLHGIFSLPLK-IKNAAYKAMG--------TEYLDGQTVPT-----WKLVDGICRES 913
TH + L ++ MG E + VP +++ GI S
Sbjct: 930 FVTHYPPVCELEKSYLQEVGNYHMGFLVNEDENKEDPGEEPVPDFVTFLYQITRGIAARS 989
Query: 914 LAFETAKREGVPETIIQRA 932
AK VP I+++A
Sbjct: 990 YGLNVAKLADVPGEILKKA 1008
>CGD|CAL0005874 [details] [associations]
symbol:orf19.496 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0005874 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 HOGENOM:HOG000157750 SUPFAM:SSF53150
RefSeq:XP_717359.1 RefSeq:XP_717448.1 STRING:Q5A6Q9 GeneID:3640907
GeneID:3640972 KEGG:cal:CaO19.496 KEGG:cal:CaO19.8126
Uniprot:Q5A6Q9
Length = 923
Score = 208 (78.3 bits), Expect = 1.6e-12, Sum P(4) = 1.6e-12
Identities = 62/191 (32%), Positives = 95/191 (49%)
Query: 752 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 811
+L++++GPN GGKS+ LR +L G VPAE A+I D I + + D +
Sbjct: 727 TLWVISGPNMGGKSTYLRQNALIVILAQIGSFVPAEKATIGLVDKIFTRIGATDDLFNDL 786
Query: 812 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGIVST 870
S+F VEM E+ +I+T T SL ++DEI RGT +G IA + + +L + C + +T
Sbjct: 787 STFMVEMVEVSNILTNATPSSLAIVDEIGRGTSGKEGLAIAYATLLSLLQVNKCRTLFAT 846
Query: 871 HLHG-----IFSLPLKIKNAAY-KAMGTEYLDGQT--VPTWKLVDGICRESLAFETAKRE 922
H + + + KN Y + E D + V L GI S A + A+
Sbjct: 847 HFGKELEQLLVANNIDQKNIRYFRTRVLENGDNEKGFVIDHTLEPGISERSHALDVARMA 906
Query: 923 GVPETIIQRAE 933
G PE ++ AE
Sbjct: 907 GFPENALKAAE 917
Score = 48 (22.0 bits), Expect = 1.6e-12, Sum P(4) = 1.6e-12
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 335 GDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPL 371
GDPV +L+ L GL+ F + YE P+ L
Sbjct: 421 GDPVNQLVYAASTLDGLQKLRDF--LVEEYEQNPKKL 455
Score = 48 (22.0 bits), Expect = 1.6e-12, Sum P(4) = 1.6e-12
Identities = 27/96 (28%), Positives = 40/96 (41%)
Query: 139 PREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPES--IPKAGCPVVNLRQTLDDLT 196
P V L +VG FYE A GL + + +P AG P LR+ + L
Sbjct: 64 PGCVSLIQVGSFYELYFEQAEEYGPKLGLK-IAKKKTSNHVVPFAGFPTTQLRKFTEMLI 122
Query: 197 RNGY-SVCIVEEV-QGPTQARSRKSRFISGHAHPGS 230
+V I+++ QG ++ R IS PG+
Sbjct: 123 HEQQVNVAIIDQCDQGSKTNQNLVHRKISRIITPGT 158
Score = 43 (20.2 bits), Expect = 1.6e-12, Sum P(4) = 1.6e-12
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 445 KLLELREANHIEFCRIKNVLDEI 467
+L EL H + +++NVLD+I
Sbjct: 546 ELSELEVEEHKLWSKLRNVLDDI 568
>WB|WBGene00003421 [details] [associations]
symbol:msh-5 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0051026
"chiasma assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0045143 "homologous chromosome
segregation" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070 PIR:T20659
PIR:T20660 PIR:T43201 RefSeq:NP_502531.1 UniGene:Cel.19456
ProteinModelPortal:Q19272 STRING:Q19272 EnsemblMetazoa:F09E8.3
GeneID:178268 KEGG:cel:CELE_F09E8.3 UCSC:F09E8.3 CTD:178268
WormBase:F09E8.3 GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447
InParanoid:Q19272 OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3
Uniprot:Q19272
Length = 1369
Score = 219 (82.2 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 61/190 (32%), Positives = 93/190 (48%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS ++SI L G VPA A I D I+ M + DS DG S+F
Sbjct: 636 IITGPNACGKSVYMKSIGIMVFLSHIGSFVPARHAKIGIVDRIVTRMFTVDSVLDGMSTF 695
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG---CLGI-VST 870
++ ++ + T SLV+IDE +GT T G + S++ N G C I +S+
Sbjct: 696 AKDVEQVALALRKATGNSLVIIDEFGKGTMTEVGLSLLASVMTYWMNRGADRCPHIFLSS 755
Query: 871 HLHGIFS-LPLKIKNAAYKAMGT-EYLDGQTVPTWKLVDGICRESLAFETAKREGVPETI 928
H H + + +PL+ A + G+ +++ G+ S A AK EG+P +
Sbjct: 756 HFHALPNYIPLETNIATFLTFTVLREAGGKIKYLFRMTPGLVDCSFALSVAKEEGIPPPV 815
Query: 929 IQRAEDLYIA 938
I RA +Y A
Sbjct: 816 IGRACRIYKA 825
Score = 42 (19.8 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 18/82 (21%), Positives = 39/82 (47%)
Query: 454 HIE-FCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVE--ECRLASVR 510
H E F N L EIL++ + +++ + D + + + +++ E ++ R
Sbjct: 385 HWECFVSTVNALVEILNIIRQTPISKEFPVESDLLREVSEIAVIAGSIINFAESKIQG-R 443
Query: 511 IGEMISLDGESDQKICSYDNIP 532
+ M +D E D+ +Y+N+P
Sbjct: 444 VTVMNGIDEELDEIRDTYENMP 465
>UNIPROTKB|Q19272 [details] [associations]
symbol:msh-5 "MutS protein homolog 5" species:6239
"Caenorhabditis elegans" [GO:0005634 "nucleus" evidence=IMP]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070
PIR:T20659 PIR:T20660 PIR:T43201 RefSeq:NP_502531.1
UniGene:Cel.19456 ProteinModelPortal:Q19272 STRING:Q19272
EnsemblMetazoa:F09E8.3 GeneID:178268 KEGG:cel:CELE_F09E8.3
UCSC:F09E8.3 CTD:178268 WormBase:F09E8.3
GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447 InParanoid:Q19272
OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3 Uniprot:Q19272
Length = 1369
Score = 219 (82.2 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 61/190 (32%), Positives = 93/190 (48%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS ++SI L G VPA A I D I+ M + DS DG S+F
Sbjct: 636 IITGPNACGKSVYMKSIGIMVFLSHIGSFVPARHAKIGIVDRIVTRMFTVDSVLDGMSTF 695
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG---CLGI-VST 870
++ ++ + T SLV+IDE +GT T G + S++ N G C I +S+
Sbjct: 696 AKDVEQVALALRKATGNSLVIIDEFGKGTMTEVGLSLLASVMTYWMNRGADRCPHIFLSS 755
Query: 871 HLHGIFS-LPLKIKNAAYKAMGT-EYLDGQTVPTWKLVDGICRESLAFETAKREGVPETI 928
H H + + +PL+ A + G+ +++ G+ S A AK EG+P +
Sbjct: 756 HFHALPNYIPLETNIATFLTFTVLREAGGKIKYLFRMTPGLVDCSFALSVAKEEGIPPPV 815
Query: 929 IQRAEDLYIA 938
I RA +Y A
Sbjct: 816 IGRACRIYKA 825
Score = 42 (19.8 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 18/82 (21%), Positives = 39/82 (47%)
Query: 454 HIE-FCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVE--ECRLASVR 510
H E F N L EIL++ + +++ + D + + + +++ E ++ R
Sbjct: 385 HWECFVSTVNALVEILNIIRQTPISKEFPVESDLLREVSEIAVIAGSIINFAESKIQG-R 443
Query: 511 IGEMISLDGESDQKICSYDNIP 532
+ M +D E D+ +Y+N+P
Sbjct: 444 VTVMNGIDEELDEIRDTYENMP 465
>UNIPROTKB|A8J8E2 [details] [associations]
symbol:CHLREDRAFT_120228 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 InterPro:IPR015536
PANTHER:PTHR11361:SF31 EMBL:DS496143 RefSeq:XP_001697747.1
EnsemblPlants:EDO99899 GeneID:5723369 KEGG:cre:CHLREDRAFT_120228
ProtClustDB:CLSN2703491 Uniprot:A8J8E2
Length = 86
Score = 177 (67.4 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 36/86 (41%), Positives = 57/86 (66%)
Query: 757 TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 816
+GPN GGKS+LLR C A++L G VPAES ++ D++ + M + DS G+S+F +
Sbjct: 1 SGPNMGGKSTLLRQTCLAAILAQVGAWVPAESLTLSPVDSLFVRMGARDSIMTGQSTFFI 60
Query: 817 EMSEIRSIVTATTSRSLVLIDEICRG 842
E++E +++ T SLV++DE+ RG
Sbjct: 61 ELAETAAMLARATPDSLVVLDELGRG 86
>WB|WBGene00001872 [details] [associations]
symbol:him-14 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0045143 "homologous
chromosome segregation" evidence=IMP] [GO:0051026 "chiasma
assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
EMBL:FO081697 GO:GO:0000239 GO:GO:0008094 GO:GO:0051026
GO:GO:0000712 GO:GO:0045143 GO:GO:0000795 EMBL:AF178755 PIR:E88197
RefSeq:NP_495451.1 UniGene:Cel.22695 ProteinModelPortal:Q23405
SMR:Q23405 STRING:Q23405 PaxDb:Q23405 EnsemblMetazoa:ZK1127.11
GeneID:174157 KEGG:cel:CELE_ZK1127.11 UCSC:ZK1127.11 CTD:174157
WormBase:ZK1127.11 eggNOG:COG0249 GeneTree:ENSGT00550000074897
HOGENOM:HOG000015880 InParanoid:Q23405 KO:K08740 OMA:GFFIQMT
NextBio:882779 GermOnline:ZK1127.11 Gene3D:3.30.420.110
SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 214 (80.4 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 61/204 (29%), Positives = 97/204 (47%)
Query: 735 WFDAAEGSAVHNT-VDMQSLF-LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIP 792
W D +E + ++T + F ++TGPN GKS+ L+ +++ G +PA AS+P
Sbjct: 564 W-DDSEKTITNDTCLTRDRRFGIITGPNMAGKSTYLKQTAQLAIMAQIGCFIPANYASLP 622
Query: 793 YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIA 852
F+ I M D KS+F EMS+ +IV SLV++DE+ R T T +G I
Sbjct: 623 IFNRIFSRMGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAIT 682
Query: 853 GSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRE 912
+I E + + ++TH I +L NA D + KL+ G R
Sbjct: 683 YAICEKVLKLQSYTFLATHFLDIAALA-NYSNAIDNYHFLPQTDENSTKKHKLLRGQYRG 741
Query: 913 SL-AFETAKREGVPETIIQRAEDL 935
L FE + +P+ +I+ A+ L
Sbjct: 742 PLYGFELVELSTIPDEVIEHAQSL 765
Score = 39 (18.8 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 552 IEPEIAEVEMAAEALSLAVTEDFL---PIISRIKATTAPLGGPKGEILYAREHEAVWFKG 608
++P I + A +ALS + DFL S ++ T P GP I R W
Sbjct: 511 MQPMIPVLYYAMDALS---SIDFLCGLATYSDLRDTCKPTFGPSFSISQGRHPILDWDDS 567
Query: 609 KK 610
+K
Sbjct: 568 EK 569
Score = 37 (18.1 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 552 IEPEIAEVEMAAEALSLAVTEDFLPII 578
+E +AE+ +A++ + + E+ P+I
Sbjct: 489 LEQVVAEMFLASDVIVCDMIEEMQPMI 515
>UNIPROTKB|Q23405 [details] [associations]
symbol:him-14 "MutS protein homolog him-14" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IMP] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IMP]
[GO:0000239 "pachytene" evidence=IMP] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0051729 GO:GO:0006298
GO:GO:0030983 EMBL:FO081697 GO:GO:0000239 GO:GO:0008094
GO:GO:0051026 GO:GO:0000712 GO:GO:0045143 GO:GO:0000795
EMBL:AF178755 PIR:E88197 RefSeq:NP_495451.1 UniGene:Cel.22695
ProteinModelPortal:Q23405 SMR:Q23405 STRING:Q23405 PaxDb:Q23405
EnsemblMetazoa:ZK1127.11 GeneID:174157 KEGG:cel:CELE_ZK1127.11
UCSC:ZK1127.11 CTD:174157 WormBase:ZK1127.11 eggNOG:COG0249
GeneTree:ENSGT00550000074897 HOGENOM:HOG000015880 InParanoid:Q23405
KO:K08740 OMA:GFFIQMT NextBio:882779 GermOnline:ZK1127.11
Gene3D:3.30.420.110 SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 214 (80.4 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 61/204 (29%), Positives = 97/204 (47%)
Query: 735 WFDAAEGSAVHNT-VDMQSLF-LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIP 792
W D +E + ++T + F ++TGPN GKS+ L+ +++ G +PA AS+P
Sbjct: 564 W-DDSEKTITNDTCLTRDRRFGIITGPNMAGKSTYLKQTAQLAIMAQIGCFIPANYASLP 622
Query: 793 YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIA 852
F+ I M D KS+F EMS+ +IV SLV++DE+ R T T +G I
Sbjct: 623 IFNRIFSRMGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAIT 682
Query: 853 GSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRE 912
+I E + + ++TH I +L NA D + KL+ G R
Sbjct: 683 YAICEKVLKLQSYTFLATHFLDIAALA-NYSNAIDNYHFLPQTDENSTKKHKLLRGQYRG 741
Query: 913 SL-AFETAKREGVPETIIQRAEDL 935
L FE + +P+ +I+ A+ L
Sbjct: 742 PLYGFELVELSTIPDEVIEHAQSL 765
Score = 39 (18.8 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 552 IEPEIAEVEMAAEALSLAVTEDFL---PIISRIKATTAPLGGPKGEILYAREHEAVWFKG 608
++P I + A +ALS + DFL S ++ T P GP I R W
Sbjct: 511 MQPMIPVLYYAMDALS---SIDFLCGLATYSDLRDTCKPTFGPSFSISQGRHPILDWDDS 567
Query: 609 KK 610
+K
Sbjct: 568 EK 569
Score = 37 (18.1 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 552 IEPEIAEVEMAAEALSLAVTEDFLPII 578
+E +AE+ +A++ + + E+ P+I
Sbjct: 489 LEQVVAEMFLASDVIVCDMIEEMQPMI 515
>UNIPROTKB|Q8EYH8 [details] [associations]
symbol:LA_4236 "DNA mismatch repair protein ATPase
component" species:189518 "Leptospira interrogans serovar Lai str.
56601" [GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 GO:GO:0008094
GO:GO:0032300 EMBL:AE010300 GenomeReviews:AE010300_GR
RefSeq:NP_714416.1 ProteinModelPortal:Q8EYH8 GeneID:1153578
KEGG:lil:LA_4236 PATRIC:22389315 HOGENOM:HOG000117340 OMA:RERSLAC
ProtClustDB:CLSK575192 BioCyc:LINT189518:GJBB-3356-MONOMER
Uniprot:Q8EYH8
Length = 610
Score = 199 (75.1 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 68/224 (30%), Positives = 107/224 (47%)
Query: 709 KWVFPALKDIELDGANCLK-MNGLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGK 764
KW+FP E+ N + ++G + S V N +D Q++ L+TG N GK
Sbjct: 388 KWMFPDYCFPEILSENSKEGISGKGLFHPLIPSDSRVSNPLDFIEEQNVVLITGSNMSGK 447
Query: 765 SSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE---MSEI 821
++ LR+I AS+L + G VPA S+P I M++ D+ +G S F E +SEI
Sbjct: 448 TTYLRTIGVASILSMAGGPVPASKFSLPVLK-IHTSMRNEDNLEEGISFFYAEVRRLSEI 506
Query: 822 RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL- 880
+ S LVL+DEI +GT T + + I++ L + V++H L L
Sbjct: 507 VKKIRDKNSSHLVLLDEILKGTNTRERSLACKGILKELKKNRTIVFVTSH-----DLELA 561
Query: 881 KIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 924
K++ K E LDG +K+ +G+ S A +EG+
Sbjct: 562 KVEGVILKHFQEEVLDGTMYFDYKIREGLVETSNALRILVQEGL 605
>TAIR|locus:2130913 [details] [associations]
symbol:MSH4 "AT4G17380" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000794 "condensed nuclear chromosome" evidence=IDA]
[GO:0007129 "synapsis" evidence=RCA;IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007067 "mitosis"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0032204 "regulation of
telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 SMART:SM00533 SMART:SM00534 GO:GO:0009506
GO:GO:0005524 EMBL:CP002687 GO:GO:0003684 EMBL:Z97343 GO:GO:0030983
GO:GO:0008094 GO:GO:0051026 EMBL:AL161546 GO:GO:0045143
GO:GO:0043073 GO:GO:0000795 GO:GO:0007128 KO:K08740 OMA:GFFIQMT
SUPFAM:SSF48334 GO:GO:0032300 EMBL:AY646927 IPI:IPI00525244
IPI:IPI00538174 PIR:B71443 RefSeq:NP_193469.2 UniGene:At.24376
UniGene:At.71316 ProteinModelPortal:F4JP48 SMR:F4JP48 IntAct:F4JP48
EnsemblPlants:AT4G17380.1 GeneID:827450 KEGG:ath:AT4G17380
TAIR:At4g17380 GO:GO:0010777 Uniprot:F4JP48
Length = 792
Score = 212 (79.7 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 75/296 (25%), Positives = 130/296 (43%)
Query: 645 STLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINIL-VFASMLLVIGKAL--FAH 701
S+L++ R A + + L L ++ I+ L + A +L ++ + FAH
Sbjct: 438 SSLELASLNVRNKSAAGECFIRTETCLEALMDAIREDISALTLLAEVLCLLDMIVNSFAH 497
Query: 702 -VSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQ---SLFLLT 757
+S ++ P L D G + G P ++ V N++ M ++ ++
Sbjct: 498 TISTKPVDRYSRPELTD---SGPLAIDA-GRHPI-LESIHNDFVSNSIFMSEATNMLVVM 552
Query: 758 GPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 817
GPN GKS+ L+ +C +L G VPA A+I D I M + D+ S+F E
Sbjct: 553 GPNMSGKSTYLQQVCLVVILAQIGCYVPARFATIRVVDRIFTRMGTMDNLESNSSTFMTE 612
Query: 818 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 877
M E I+ T+RSL+++DE+ R T ++ G +A S E L ++ + +TH+ +
Sbjct: 613 MRETAFIMQNVTNRSLIVMDELGRATSSSDGLAMAWSCCEYLLSLKAYTVFATHMDSLAE 672
Query: 878 LPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICR-ESLAFETAKREGVPETIIQRA 932
L N + D + ++L DG A+ G+P T+I A
Sbjct: 673 LATIYPNVKVLHFYVDIRDNRLDFKFQLRDGTLHVPHYGLLLAEVAGLPSTVIDTA 728
Score = 39 (18.8 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 362 VSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILY 406
+ +EN + ++ ++ + + +P L KVL + C L +Y
Sbjct: 275 IGFENTRKSQNMISSIILLKTALDALPILAKVLKDAKCFLLANVY 319
>MGI|MGI:109519 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IGI] [GO:0003684
"damaged DNA binding" evidence=IGI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0019237 "centromeric DNA binding" evidence=IDA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=ISO;IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=ISO;IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:109519 GO:GO:0005524 GO:GO:0003684
GO:GO:0019237 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 KO:K08736
CTD:4437 HOVERGEN:HBG006400 OrthoDB:EOG434W57 GO:GO:0016447
EMBL:M80360 EMBL:L10319 EMBL:L10295 EMBL:L10296 EMBL:L10297
EMBL:L10298 EMBL:L10299 EMBL:L10300 EMBL:L10301 EMBL:L10304
EMBL:L10305 EMBL:L10306 EMBL:L10307 EMBL:L10308 EMBL:L10309
EMBL:L10310 EMBL:L10311 EMBL:L10312 EMBL:L10313 EMBL:L10314
EMBL:L10315 EMBL:L10316 EMBL:L10317 EMBL:L10318 EMBL:M24919
IPI:IPI00896729 PIR:A32495 RefSeq:NP_034959.2 UniGene:Mm.343101
ProteinModelPortal:P13705 SMR:P13705 STRING:P13705
PhosphoSite:P13705 PaxDb:P13705 PRIDE:P13705 GeneID:17686
KEGG:mmu:17686 InParanoid:P13705 ChiTaRS:MSH3 NextBio:292256
CleanEx:MM_MSH3 Genevestigator:P13705 GermOnline:ENSMUSG00000014850
Uniprot:P13705
Length = 1091
Score = 202 (76.2 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 56/200 (28%), Positives = 99/200 (49%)
Query: 749 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 808
D + + ++TGPN GGKSS ++ + +++ G VPAE A+I D I M + D+
Sbjct: 841 DSERVMIITGPNMGGKSSYIKQVTLVTIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIY 900
Query: 809 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET-LDNIGCLGI 867
G+S+F ++++ I+ + +SLV++DE+ RGT T G IA + +E + ++ L +
Sbjct: 901 KGRSTFMEQLTDTAEIIRRASPQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTL 960
Query: 868 VSTHLHGIFSL----PLKIKNAAYKAMGTEYL------DGQTVPT-----WKLVDGICRE 912
TH + L P ++ N + E D + +P +++ GI
Sbjct: 961 FVTHYPPVCELEKCYPEQVGNYHMGFLVNEDESKQDSGDMEQMPDSVTFLYQITRGIAAR 1020
Query: 913 SLAFETAKREGVPETIIQRA 932
S AK VP ++Q+A
Sbjct: 1021 SYGLNVAKLADVPREVLQKA 1040
>ZFIN|ZDB-GENE-060526-307 [details] [associations]
symbol:msh3 "mutS homolog 3 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-060526-307 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GeneTree:ENSGT00550000074949
EMBL:CR381619 IPI:IPI00805026 Ensembl:ENSDART00000092285
Uniprot:F1QCN5
Length = 950
Score = 203 (76.5 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 42/108 (38%), Positives = 63/108 (58%)
Query: 745 HNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSY 804
H D + ++TGPN GGKSS +R + +++ G VPA AS+ D I + M +
Sbjct: 839 HLQGDGKRAMIITGPNMGGKSSYIRQVALVTIMAQLGSFVPAREASVGIVDGIYVRMGAS 898
Query: 805 DSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIA 852
D+ + G+S+F E+ E ++ TSRSLV++DE+ RGT T G IA
Sbjct: 899 DNISRGRSTFMEELLETSDVLACATSRSLVILDELGRGTSTHDGIAIA 946
Score = 50 (22.7 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 429 LMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDE 466
++ K C + CL L ++ + N+ +CR VL+E
Sbjct: 775 ILRKAVCHLATMDCLFSLAQVAKENN--YCR-PEVLEE 809
Score = 45 (20.9 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 589 GGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRK 638
G KG +L+ +H F GK+ W S P LK +D + R+
Sbjct: 513 GSVKGSLLWVLDHTQTLF-GKRLLRK-WVSQP-------LKSVIDIQARQ 553
Score = 44 (20.5 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 618 STPGE-EQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAK 664
S PG + + +L+P+ K + + + E +E + E K K
Sbjct: 109 SCPGSSDSVMELEPSHSGKAEISASQQHNVIMHNEMVEEFKEEPIKVK 156
>MGI|MGI:1860077 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=ISS;IDA] [GO:0001541 "ovarian
follicle development" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0007126 "meiosis" evidence=IDA;IMP] [GO:0007129 "synapsis"
evidence=IMP] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007292 "female gamete generation" evidence=IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:1860077 GO:GO:0005524 GO:GO:0005654
GO:GO:0007283 GO:GO:0006298 Reactome:REACT_120463 GO:GO:0001541
GO:GO:0030983 GO:GO:0007292 GO:GO:0007131 Reactome:REACT_27235
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 CTD:4438
HOGENOM:HOG000290656 HOVERGEN:HBG036910 OrthoDB:EOG4DR9BS
EMBL:AF298655 EMBL:AF178957 IPI:IPI00118045 RefSeq:NP_114076.1
UniGene:Mm.272226 ProteinModelPortal:Q99MT2 SMR:Q99MT2
STRING:Q99MT2 PhosphoSite:Q99MT2 PRIDE:Q99MT2
Ensembl:ENSMUST00000005630 GeneID:55993 KEGG:mmu:55993
InParanoid:Q99MT2 ChiTaRS:MSH4 NextBio:311726 Bgee:Q99MT2
CleanEx:MM_MSH4 Genevestigator:Q99MT2 GermOnline:ENSMUSG00000005493
Uniprot:Q99MT2
Length = 958
Score = 213 (80.0 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 61/207 (29%), Positives = 102/207 (49%)
Query: 738 AAEGSAVHNT--VDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 795
+AE +NT + ++ ++TGPN GKS+ L+ I ++ G VPAE AS
Sbjct: 680 SAEKPVANNTYITEGSNVLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYASFRIAA 739
Query: 796 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 855
I + + D S+F EM EI I+ +SL+LIDE+ RGT T +G I+ ++
Sbjct: 740 QIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGISYAV 799
Query: 856 IETLDNIGCLGIVSTH---LHGIFSLPLKIKNAAYKAM---GTEYLDGQTVPTWKLVDGI 909
E L +I + +TH L + +L L ++N ++ T + T+KL G+
Sbjct: 800 CEHLLSIKAFTLFTTHFLELCHLDALYLNVENMHFEVQHVKNTSRNKDAILYTYKLSRGL 859
Query: 910 CRE-SLAFETAKREGVPETIIQRAEDL 935
E + + A+ +P +I+ A D+
Sbjct: 860 TEEKNYGLKAAEASSLPSSIVLDARDI 886
Score = 38 (18.4 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 422 TIQAICKLMSKVTCSIPEFTCLVKL 446
T +CKL+S++ CL KL
Sbjct: 614 TYMIVCKLLSEI---YEHIHCLYKL 635
>UNIPROTKB|F1MLH1 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:DAAA02021015
EMBL:DAAA02021016 EMBL:DAAA02021017 EMBL:DAAA02021018
IPI:IPI00867495 Ensembl:ENSBTAT00000010107 Uniprot:F1MLH1
Length = 1120
Score = 200 (75.5 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 43/124 (34%), Positives = 72/124 (58%)
Query: 749 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 808
D + + ++TGPN GGKSS ++ + +++ G VPAE A+I D I M + D+
Sbjct: 875 DSERVMIITGPNMGGKSSYIKQVALITVMAQIGSYVPAEEATIGIVDGIFTRMGAADNIY 934
Query: 809 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET-LDNIGCLGI 867
G+S+F E+++ I+ T +SLV++DE+ RGT T G IA + +E + ++ L +
Sbjct: 935 KGQSTFMEELTDTAEIIRKATPQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTL 994
Query: 868 VSTH 871
TH
Sbjct: 995 FVTH 998
>UNIPROTKB|A4R0R0 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0005634
GO:GO:0006298 EMBL:CM001231 GO:GO:0030983 eggNOG:COG0249
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08736
OrthoDB:EOG42NN7M RefSeq:XP_003709956.1 STRING:A4R0R0
EnsemblFungi:MGG_09306T0 GeneID:2680221 KEGG:mgr:MGG_09306
Uniprot:A4R0R0
Length = 1151
Score = 223 (83.6 bits), Expect = 1.3e-11, Sum P(4) = 1.3e-11
Identities = 50/122 (40%), Positives = 72/122 (59%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
L+TGPN GGKSS +R++ LL G VPA+S + DAI M + D+ G+S+F
Sbjct: 910 LVTGPNMGGKSSFVRALALLVLLAQVGSFVPADSLRLTLSDAIYTRMGASDNLFAGESTF 969
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE-TLDNIGCLGIVSTHLH 873
VE+ E +I+ T RSLVL+DE+ RGT T G IA ++++ + N CL + TH
Sbjct: 970 MVEVGETAAILRTATPRSLVLLDELGRGTSTHDGAAIAHAVLDHVVRNTRCLTLFITHYQ 1029
Query: 874 GI 875
+
Sbjct: 1030 SL 1031
Score = 41 (19.5 bits), Expect = 1.3e-11, Sum P(4) = 1.3e-11
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 903 WKLVDGICRESLAFETAKREGVPETIIQRA 932
+++ DG+ S A+ +P I++ A
Sbjct: 1076 YEVADGVAHRSYGLNVARLARIPRKILEVA 1105
Score = 39 (18.8 bits), Expect = 1.3e-11, Sum P(4) = 1.3e-11
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 211 PTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPM 249
P +A S ++F +G + +D L+ PEP+
Sbjct: 469 PAEASSHVTKFYAGKLKGSTQDDRAAALLDKVLNLPEPV 507
Score = 39 (18.8 bits), Expect = 1.3e-11, Sum P(4) = 1.3e-11
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 531 IPSEFFEDMESTW---KG--RVKRIHIEPE----IAEVEMAAEALSLAVTEDFLPIISRI 581
+P+ + ++W G ++ R H PE IAE + EAL+ A F +++ I
Sbjct: 772 VPNTEIRKVPASWAKISGTKKLSRFHT-PEVVRLIAERDQHKEALAAACDAAFKAMLASI 830
Query: 582 KATTAPL 588
PL
Sbjct: 831 ADQYQPL 837
>UNIPROTKB|Q6L4V0 [details] [associations]
symbol:P0010D04.9 "Putative uncharacterized protein
P0010D04.9" species:39947 "Oryza sativa Japonica Group" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:AP008211 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AC130605 RefSeq:NP_001055948.1 UniGene:Os.53982
GeneID:4339215 KEGG:osa:4339215 ProtClustDB:CLSN2695708
Uniprot:Q6L4V0
Length = 809
Score = 201 (75.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 59/187 (31%), Positives = 92/187 (49%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS ++ + L G VPA+SA + D I M S ++ +S+F
Sbjct: 569 IITGPNYSGKSIYIKQVALVVFLAHIGSFVPADSAIVGLTDRIFCAMGSKSMTSE-QSTF 627
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG--IVSTHL 872
+++ ++ +++ TSRSL L+DE +GT T G + G I + C ++STHL
Sbjct: 628 MIDLHQVGTMLRHATSRSLCLLDEFGKGTLTEDGIGLLGGTISHFTDYDCPPKVLLSTHL 687
Query: 873 HGIFS---LPLK--IKNAAYKAMGT-EYLDGQTVP-TWKLVDGICRESLAFETAKREGVP 925
IF+ LP IK + E D + V ++LV G S A+ GVP
Sbjct: 688 TQIFTESYLPQSEHIKCYTMSVLNPDEQTDNEDVIFLYRLVPGQALLSFGLHCAQLAGVP 747
Query: 926 ETIIQRA 932
++QRA
Sbjct: 748 SEVVQRA 754
Score = 46 (21.3 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 547 VKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAP--LGGPK--GEILYAREHE 602
V+ I E I E++ AL + F+P ++I+++ + GP G+ +Y ++
Sbjct: 527 VRPILTEDSILEIQNGRHALQEMTVDTFVPNDTKIRSSGRINIITGPNYSGKSIYIKQVA 586
Query: 603 AVWF 606
V F
Sbjct: 587 LVVF 590
Score = 40 (19.1 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 699 FAHVSEGRRRKWVFPALKDIELD 721
FA EG R++ + K ELD
Sbjct: 447 FAFSEEGEERRFYYHTQKTRELD 469
>UNIPROTKB|P20585 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein Msh3" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0016447 "somatic recombination of immunoglobulin gene segments"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0019899 "enzyme binding" evidence=IPI] [GO:0032302 "MutSbeta
complex" evidence=IDA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IMP] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0019237 EMBL:AC008434 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0045910 MIM:608089
GO:GO:0008094 UniGene:Hs.648635 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0051096 PDB:3THW PDB:3THX PDB:3THY PDB:3THZ PDBsum:3THW
PDBsum:3THX PDBsum:3THY PDBsum:3THZ HOGENOM:HOG000029776 KO:K08736
EMBL:J04810 EMBL:U61981 EMBL:D61419 EMBL:AY275681 EMBL:AC010270
EMBL:AC022493 EMBL:BC011817 EMBL:BC130436 IPI:IPI00329605
PIR:A33507 RefSeq:NP_002430.3 UniGene:Hs.280987
ProteinModelPortal:P20585 SMR:P20585 DIP:DIP-35127N IntAct:P20585
MINT:MINT-192778 STRING:P20585 PhosphoSite:P20585 DMDM:229462953
PaxDb:P20585 PRIDE:P20585 Ensembl:ENST00000265081 GeneID:4437
KEGG:hsa:4437 UCSC:uc003kgz.3 CTD:4437 GeneCards:GC05P079986
H-InvDB:HIX0032037 HGNC:HGNC:7326 HPA:HPA036080 HPA:HPA036081
MIM:600887 neXtProt:NX_P20585 PharmGKB:PA31134 HOVERGEN:HBG006400
InParanoid:P20585 OMA:HYFELTV OrthoDB:EOG434W57 GenomeRNAi:4437
NextBio:17293 ArrayExpress:P20585 Bgee:P20585 CleanEx:HS_MSH3
Genevestigator:P20585 GermOnline:ENSG00000113318 GO:GO:0016447
Uniprot:P20585
Length = 1137
Score = 211 (79.3 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 63/203 (31%), Positives = 104/203 (51%)
Query: 749 DMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 808
D + + ++TGPN GGKSS ++ + +++ G VPAE A+I D I M + D+
Sbjct: 887 DSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIY 946
Query: 809 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET-LDNIGCLGI 867
G+S+F E+++ I+ TS+SLV++DE+ RGT T G IA + +E + ++ L +
Sbjct: 947 KGQSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTL 1006
Query: 868 VSTHLHGIFSLPLKIKNAAYKA----MG---TE---YLD---GQTVPT-----WKLVDGI 909
TH + L KN +++ MG +E LD + VP +++ GI
Sbjct: 1007 FVTHYPPVCELE---KNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGI 1063
Query: 910 CRESLAFETAKREGVPETIIQRA 932
S AK VP I+++A
Sbjct: 1064 AARSYGLNVAKLADVPGEILKKA 1086
Score = 39 (18.8 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 592 KGEILYAREHEAVWFKGKKFRPTVWASTP 620
KG +L+ +H F +K + W + P
Sbjct: 557 KGSLLWVLDHTKTSFGRRKLKK--WVTQP 583
>UNIPROTKB|Q9UFG2 [details] [associations]
symbol:DKFZp434C1615 "Putative uncharacterized protein
DKFZp434C1615" species:9606 "Homo sapiens" [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 EMBL:BX248244 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 HSSP:Q56215 UniGene:Hs.647011
HGNC:HGNC:7328 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AL122094
IPI:IPI00945579 PIR:T34526 STRING:Q9UFG2 Ensembl:ENST00000554793
HOVERGEN:HBG066397 Uniprot:Q9UFG2
Length = 263
Score = 181 (68.8 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 36/102 (35%), Positives = 60/102 (58%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + + G VPAE A I DAI + S +S + G S+F
Sbjct: 113 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 172
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 856
++++++ V T++SLVLIDE +GT T G + +++
Sbjct: 173 MIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVL 214
>UNIPROTKB|H0YF11 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 GO:GO:0030983
EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR759915
EMBL:CR925765 EMBL:BX248133 HGNC:HGNC:41994 Ensembl:ENST00000469011
Ensembl:ENST00000476578 Ensembl:ENST00000480622
Ensembl:ENST00000482009 Ensembl:ENST00000492776
Ensembl:ENST00000498473 Uniprot:H0YF11
Length = 264
Score = 181 (68.8 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 36/102 (35%), Positives = 60/102 (58%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + + G VPAE A I DAI + S +S + G S+F
Sbjct: 114 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 173
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 856
++++++ V T++SLVLIDE +GT T G + +++
Sbjct: 174 MIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVL 215
>RGD|1309190 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000793 "condensed chromosome" evidence=ISO] [GO:0000794
"condensed nuclear chromosome" evidence=ISO] [GO:0000795
"synaptonemal complex" evidence=ISO;IBA] [GO:0001541 "ovarian
follicle development" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0007126 "meiosis" evidence=ISO] [GO:0007129
"synapsis" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007283 "spermatogenesis"
evidence=IEA;ISO] [GO:0007292 "female gamete generation"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008150 "biological_process" evidence=ND]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1309190 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 IPI:IPI00870836 Ensembl:ENSRNOT00000014106
Uniprot:F1M9U4
Length = 958
Score = 209 (78.6 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 60/207 (28%), Positives = 101/207 (48%)
Query: 738 AAEGSAVHNT--VDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 795
+AE +NT + ++ ++TGPN GKS+ L+ I ++ G VPA+ AS
Sbjct: 680 SAEKPVANNTYITEGSNVLIITGPNMSGKSTFLKQIALCQIMAQIGSFVPAQYASFRIAA 739
Query: 796 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 855
I + + D S+F EM EI I+ +SL+LIDE+ RGT T +GT I+ ++
Sbjct: 740 QIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGTGISYAV 799
Query: 856 IETLDNIGCLGIVSTH---LHGIFSLPLKIKNAAYKAM---GTEYLDGQTVPTWKLVDGI 909
E L + + +TH L I +L L ++N ++ T + T+KL G+
Sbjct: 800 CEHLLSTKAFTLFTTHFLELCHIDTLYLNVENMHFEVQHVKNTSRNKDAILYTYKLSRGL 859
Query: 910 CRES-LAFETAKREGVPETIIQRAEDL 935
E + A+ +P +I+ A ++
Sbjct: 860 TEEKHYGLKAAEASSLPPSIVLDAREI 886
Score = 38 (18.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 422 TIQAICKLMSKVTCSIPEFTCLVKL 446
T +CKL+S++ CL KL
Sbjct: 614 TYMIVCKLLSEI---YEHIHCLYKL 635
>UNIPROTKB|E9PGY4 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 HGNC:HGNC:7328
HGNC:HGNC:41994 IPI:IPI00790547 SMR:E9PGY4 Ensembl:ENST00000548094
Ensembl:ENST00000549604 Ensembl:ENST00000549746 Uniprot:E9PGY4
Length = 271
Score = 181 (68.8 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 36/102 (35%), Positives = 60/102 (58%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + + G VPAE A I DAI + S +S + G S+F
Sbjct: 121 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 180
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 856
++++++ V T++SLVLIDE +GT T G + +++
Sbjct: 181 MIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVL 222
>UNIPROTKB|Q23AD6 [details] [associations]
symbol:TTHERM_00426230 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009411 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:GG662724 RefSeq:XP_001013801.1
UniGene:Tth.12031 ProteinModelPortal:Q23AD6
EnsemblProtists:EAR93556 GeneID:7834338 KEGG:tet:TTHERM_00426230
ProtClustDB:CLSZ2445539 Uniprot:Q23AD6
Length = 1139
Score = 157 (60.3 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 43/157 (27%), Positives = 75/157 (47%)
Query: 781 GLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEIC 840
G VPAE D I + + D +GKS+F +EM E+++ + T S+ + DE+
Sbjct: 944 GCYVPAEQCEFSLVDRIFTRIGAGDKLIEGKSTFYIEMEEVKNSIMYGTYNSIAIFDELG 1003
Query: 841 RGTETAKGTCIAGSIIET-LDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQT 899
RGT T G IA I++ ++ I I +TH + + K ++ M Y D ++
Sbjct: 1004 RGTSTFDGVAIAFGILKYFIEKIQSRCIFATHFFLLINELRFYKEISFYHM-EYYYDNKS 1062
Query: 900 ---VPTWKLVDGICRESLAFETAKREGVPETIIQRAE 933
+ +KL G S + AK G+ ++++ A+
Sbjct: 1063 KKLIFKYKLKQGNAESSFGIDLAKIVGIEQSVLNLAQ 1099
Score = 78 (32.5 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 752 SLFLLTGPNGGGKSSLLRSICAASLLGICGL 782
++ +LTGPN GGKS+ LR C +++L G+
Sbjct: 897 NIMILTGPNMGGKSTTLRLFCLSAILAQIGI 927
Score = 62 (26.9 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 22/80 (27%), Positives = 33/80 (41%)
Query: 133 QFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTL 192
Q K+K +++L ++G FYE DA I + F G P L +
Sbjct: 234 QIKAKHFDKIILFKMGKFYELFYEDAIIATRLLDIT-FTNKELH----CGFPEKALEKFA 288
Query: 193 DDLTRNGYSVCIVEEVQGPT 212
L + GY V +VE+ T
Sbjct: 289 SKLVQFGYKVVVVEQTSKKT 308
>UNIPROTKB|E1BK76 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:DAAA02008282 EMBL:DAAA02008283 EMBL:DAAA02008284
IPI:IPI00710010 Ensembl:ENSBTAT00000024552 Uniprot:E1BK76
Length = 855
Score = 202 (76.2 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 55/207 (26%), Positives = 100/207 (48%)
Query: 738 AAEGSAVHNT--VDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 795
+ E +NT + + F++TGPN GKS+ L+ I ++ G VPAE +S +
Sbjct: 577 SVEKPVANNTYITEGSNFFIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAE 636
Query: 796 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 855
I + + D S+F EM E+ I+ +SL+LIDE+ RGT T +G I ++
Sbjct: 637 QIFTRISTDDDIETNSSTFMKEMKEVAYILHNANDKSLILIDELGRGTNTEEGIGICYAV 696
Query: 856 IETLDNIGCLGIVSTHLHGIFSLPL---KIKNAAYKAM---GTEYLDGQTVPTWKLVDGI 909
E L ++ + +TH + + + ++N ++ T + T+KL G+
Sbjct: 697 CEHLLSLKAFTLFATHFLELCQIDVLYPNVENMHFEVQHVKNTSRNKEAILYTYKLSKGL 756
Query: 910 CRE-SLAFETAKREGVPETIIQRAEDL 935
E + + A+ +P +I+ A+D+
Sbjct: 757 TEEKNYGLKAAEVSSLPPSIVLDAKDI 783
Score = 38 (18.4 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 422 TIQAICKLMSKVTCSIPEFTCLVKL 446
T +CKL+S++ CL KL
Sbjct: 511 TYMIVCKLLSEI---YEHIHCLYKL 532
>DICTYBASE|DDB_G0284747 [details] [associations]
symbol:msh5 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0003684 "damaged DNA
binding" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0284747
GO:GO:0005524 GenomeReviews:CM000153_GR EMBL:AAFI02000071
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 SUPFAM:SSF53150 KO:K08741 RefSeq:XP_638383.1
EnsemblProtists:DDB0231220 GeneID:8624752 KEGG:ddi:DDB_G0284747
InParanoid:Q54P75 OMA:FAAELDC ProtClustDB:CLSZ2728934
Uniprot:Q54P75
Length = 880
Score = 171 (65.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 42/127 (33%), Positives = 66/127 (51%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
+++GPN GKS ++ + LG G VPA+SA+I FD I + S +S A +SSF
Sbjct: 593 IVSGPNQSGKSIYIKQVALIVFLGQIGSYVPAKSATISLFDHIYTRISSRESNAISESSF 652
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKG-TCIAGSIIETLDNIGCLG--IVSTH 871
++ +I + TSRSL++IDE +GT G + + G ++ L + TH
Sbjct: 653 MIDCKQIAQMTRFATSRSLLIIDEYGKGTNPLDGISLLYGLLVFLLTKSPSTPKTFICTH 712
Query: 872 LHGIFSL 878
+ F L
Sbjct: 713 FYEFFEL 719
Score = 70 (29.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 882 IKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 935
I N K T + +P +KL +GI S AK GV E ++ RA ++
Sbjct: 771 IFNTTNKITNTNNKPNEFIPFYKLKEGISSSSFGILCAKIAGVNENVVNRAYEI 824
>UNIPROTKB|A9WD22 [details] [associations]
symbol:Caur_0340 "DNA mismatch repair protein MutS domain
protein" species:324602 "Chloroflexus aurantiacus J-10-fl"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 EMBL:CP000909
GenomeReviews:CP000909_GR GO:GO:0008094 eggNOG:COG0249
GO:GO:0032300 RefSeq:YP_001633980.1 GeneID:5827953
KEGG:cau:Caur_0340 PATRIC:21411212 HOGENOM:HOG000020547 OMA:QGGKSTF
ProtClustDB:CLSK865139 BioCyc:CAUR324602:GIXU-343-MONOMER
Uniprot:A9WD22
Length = 505
Score = 184 (69.8 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 63/225 (28%), Positives = 97/225 (43%)
Query: 650 EEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKAL-FAHVSEGRRR 708
+ L R A +A + R L EL I L L +GK + F R
Sbjct: 237 DRGLARAANAVGQAAEHIESFFRVLQWELAFYIGCLNLYEQLTALGKPVTFPQPVPAHER 296
Query: 709 KWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLL 768
+ L D+ L L + + G+ + + D +SL ++TGPN GGK+ L
Sbjct: 297 RLSCAELYDVTL----ALTLGS-------SVVGNDI--SADGKSLIIVTGPNRGGKTVFL 343
Query: 769 RSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT 828
RS+ A L+ CG+ VPAES + H K + + F+ E++ + IV
Sbjct: 344 RSVGVAQLMMQCGMFVPAESFLANLTTGLFTHFKREEDKTMERGKFEEELARMSVIVDYL 403
Query: 829 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 873
T +L+L++E T +G+ IA I+ TL G THL+
Sbjct: 404 TPNALLLLNESFSATNEREGSEIARQIVSTLIEKGIKVYFVTHLY 448
>UNIPROTKB|Q3ABU1 [details] [associations]
symbol:mutS2 "MutS2 protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR003593
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382 SMART:SM00533
SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524
GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0006298 GO:GO:0017111 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456
OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 169 (64.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 47/182 (25%), Positives = 88/182 (48%)
Query: 753 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE-SASIPYFDAIMLHMKSYDSPADGK 811
L ++TGPN GGK+ L++I +++ GL +PA I F + + + S
Sbjct: 323 LLIITGPNTGGKTVTLKTIGILTIMARAGLFIPASPETEIGLFGEVYVDIGDEQSIVQSL 382
Query: 812 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 871
S+F + ++ I+ LVL+DE+ GT+ +G +A +I+E L + +TH
Sbjct: 383 STFSSHLLNLKFILENAREGDLVLLDELGTGTDPREGAALAKAILEELRGKKVKVVATTH 442
Query: 872 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 931
+ + ++ + ++ E+ PT++L G S A A+ G+ E II++
Sbjct: 443 TSELAAYAIETERVENASV--EFDPESLKPTYRLHIGKPGRSNALYIAQGLGLKEQIIEK 500
Query: 932 AE 933
A+
Sbjct: 501 AK 502
Score = 69 (29.3 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 30/103 (29%), Positives = 43/103 (41%)
Query: 618 STPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALE--RYHEAGAKAKAKVLELLRGLS 675
S PG++ +++P DSK + EE L+VEE L R+ + E+ LS
Sbjct: 24 SFPGKQLALKVRPLSDSK---IIEE--KLLEVEEGLSYLRFKTVDLSVLSDFSEIFLKLS 78
Query: 676 SELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDI 718
E + LL + K F +S G FP LK I
Sbjct: 79 KESMLTGQEIYRLGQLLKVSKDTFFEISRG-----AFPRLKQI 116
>TIGR_CMR|CHY_1564 [details] [associations]
symbol:CHY_1564 "DNA mismatch repair protein MutS"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003684 GO:GO:0006281 GO:GO:0006298 GO:GO:0017111
GO:GO:0030983 SMART:SM00463 PROSITE:PS50828 GO:GO:0045005
SUPFAM:SSF48334 HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 169 (64.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 47/182 (25%), Positives = 88/182 (48%)
Query: 753 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE-SASIPYFDAIMLHMKSYDSPADGK 811
L ++TGPN GGK+ L++I +++ GL +PA I F + + + S
Sbjct: 323 LLIITGPNTGGKTVTLKTIGILTIMARAGLFIPASPETEIGLFGEVYVDIGDEQSIVQSL 382
Query: 812 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 871
S+F + ++ I+ LVL+DE+ GT+ +G +A +I+E L + +TH
Sbjct: 383 STFSSHLLNLKFILENAREGDLVLLDELGTGTDPREGAALAKAILEELRGKKVKVVATTH 442
Query: 872 LHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQR 931
+ + ++ + ++ E+ PT++L G S A A+ G+ E II++
Sbjct: 443 TSELAAYAIETERVENASV--EFDPESLKPTYRLHIGKPGRSNALYIAQGLGLKEQIIEK 500
Query: 932 AE 933
A+
Sbjct: 501 AK 502
Score = 69 (29.3 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 30/103 (29%), Positives = 43/103 (41%)
Query: 618 STPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALE--RYHEAGAKAKAKVLELLRGLS 675
S PG++ +++P DSK + EE L+VEE L R+ + E+ LS
Sbjct: 24 SFPGKQLALKVRPLSDSK---IIEE--KLLEVEEGLSYLRFKTVDLSVLSDFSEIFLKLS 78
Query: 676 SELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDI 718
E + LL + K F +S G FP LK I
Sbjct: 79 KESMLTGQEIYRLGQLLKVSKDTFFEISRG-----AFPRLKQI 116
>UNIPROTKB|A3KGM9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00790547
SMR:A3KGM9 Ensembl:ENST00000412975 UCSC:uc011iro.1 Uniprot:A3KGM9
Length = 401
Score = 181 (68.8 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 36/102 (35%), Positives = 60/102 (58%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + + G VPAE A I DAI + S +S + G S+F
Sbjct: 263 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 322
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 856
++++++ V T++SLVLIDE +GT T G + +++
Sbjct: 323 MIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVL 364
>UNIPROTKB|B0V0L9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334 EMBL:CR759915
UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5
SMR:B0V0L9 Ensembl:ENST00000458424 Uniprot:B0V0L9
Length = 466
Score = 181 (68.8 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 36/102 (35%), Positives = 60/102 (58%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + + G VPAE A I DAI + S +S + G S+F
Sbjct: 251 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 310
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 856
++++++ V T++SLVLIDE +GT T G + +++
Sbjct: 311 MIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVL 352
>TIGR_CMR|BA_4794 [details] [associations]
symbol:BA_4794 "MutS2 family protein" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF01713
INTERPRO:IPR002625 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003684 GO:GO:0006298 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:Q56215 RefSeq:NP_846997.1 RefSeq:YP_021440.1
RefSeq:YP_030694.1 ProteinModelPortal:Q81L40 IntAct:Q81L40
EnsemblBacteria:EBBACT00000011403 EnsemblBacteria:EBBACT00000013814
EnsemblBacteria:EBBACT00000023448 GeneID:1083920 GeneID:2815890
GeneID:2851606 KEGG:ban:BA_4794 KEGG:bar:GBAA_4794 KEGG:bat:BAS4447
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 BioCyc:BANT260799:GJAJ-4504-MONOMER
BioCyc:BANT261594:GJ7F-4656-MONOMER PANTHER:PTHR11361:SF14
TIGRFAMs:TIGR01069 Uniprot:Q81L40
Length = 786
Score = 195 (73.7 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 78/299 (26%), Positives = 138/299 (46%)
Query: 658 EAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIG-KALFAHVSEGRRRKWVFPALK 716
EA K K ++ +L L+ E+ + +I V +++ +V +FA +R K P +
Sbjct: 239 EARVKEKQEIERILLMLTEEVAVEADI-VLSNVEVVANLDFIFAKAFYAKRIKATKPIVN 297
Query: 717 DIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASL 776
+ + + P + + + D ++ ++TGPN GGK+ L+++ L
Sbjct: 298 NERYMDLRQARHPLIDP---EVIVPNNIMLGKDFTTI-VITGPNTGGKTVTLKTVGICVL 353
Query: 777 LGICGLMVPA-ESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVL 835
+ GL +P + + I F I + S S+F M I I+ SLVL
Sbjct: 354 MAQSGLHIPVMDESEICVFKNIFADIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVL 413
Query: 836 IDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYL 895
DE+ GT+ +G +A SI++ + N G + +TH + + + A E+
Sbjct: 414 FDELGAGTDPQEGAALAISILDEVCNRGARVVATTHYPELKAYGYN-REQVINA-SVEF- 470
Query: 896 DGQTV-PTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCV--MIAAREQ 951
D T+ PT KL+ G+ S AFE +KR G+ +I +A + +I+ N + MIA E+
Sbjct: 471 DVNTLSPTHKLLIGVPGRSNAFEISKRLGLSNRVIDQARN-HISTDTNKIENMIAKLEE 528
Score = 38 (18.4 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 187 NLRQTLDDLTRNGYSVCIVE 206
N+++ ++D+ NG + I+E
Sbjct: 101 NMKRFIEDMVDNGVELPILE 120
Score = 38 (18.4 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 54 RRSLRGITKSSKKVKGSNDNILSDKDLSHIM 84
R L +T+SS K +D+I++ ++ +++
Sbjct: 169 REKLENMTRSSNAQKMLSDSIVTIRNERYVI 199
>UNIPROTKB|F1P6X2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:AAEX03004895 EMBL:AAEX03004896
Ensembl:ENSCAFT00000032471 Uniprot:F1P6X2
Length = 798
Score = 195 (73.7 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 60/207 (28%), Positives = 102/207 (49%)
Query: 738 AAEGSAVHNT-VDMQSLFLL-TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 795
+ E +NT + S FL+ TGPN GKS+ L+ I ++ G VPAE +S +
Sbjct: 520 SVEKPIANNTYITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAE 579
Query: 796 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 855
I + + D S+F EM EI I+ ++SL+LIDE+ RGT T +G I ++
Sbjct: 580 QIFTRISTDDDIETNSSTFMKEMKEIAYILHNANNKSLILIDELGRGTSTEEGIGICYAV 639
Query: 856 IETLDNIGCLGIVSTH---LHGIFSLPLKIKNAAYKAM---GTEYLDGQTVPTWKLVDGI 909
E L ++ + +TH L I +L ++N ++ T + T+KL G+
Sbjct: 640 CEYLLSLKAFTLFATHFLELCHIEALYPNVENMHFEVQHVKDTSRNKEAILYTYKLCKGL 699
Query: 910 CRE-SLAFETAKREGVPETIIQRAEDL 935
E + + A+ +P +I+ A+++
Sbjct: 700 TEEKNYGLKAAEVSSLPPSIVLDAKEI 726
Score = 38 (18.4 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 422 TIQAICKLMSKVTCSIPEFTCLVKL 446
T +CKL+S++ CL KL
Sbjct: 454 TYMIVCKLLSEI---YEHIHCLYKL 475
>UNIPROTKB|O15457 [details] [associations]
symbol:MSH4 "MutS protein homolog 4" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0001541
"ovarian follicle development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007292 "female gamete
generation" evidence=IEA] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IRD] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CH471059 GO:GO:0007283
GO:GO:0006298 EMBL:AL357314 Reactome:REACT_111183 GO:GO:0001541
GO:GO:0030983 EMBL:AL445464 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 KO:K08740 OMA:GFFIQMT Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U89293 EMBL:AF104243
EMBL:AY268350 EMBL:BC033030 IPI:IPI00289914 RefSeq:NP_002431.2
UniGene:Hs.216639 ProteinModelPortal:O15457 SMR:O15457
IntAct:O15457 STRING:O15457 PhosphoSite:O15457 PRIDE:O15457
DNASU:4438 Ensembl:ENST00000263187 GeneID:4438 KEGG:hsa:4438
UCSC:uc001dhd.2 CTD:4438 GeneCards:GC01P076262 HGNC:HGNC:7327
HPA:HPA028117 MIM:602105 neXtProt:NX_O15457 PharmGKB:PA31135
HOGENOM:HOG000290656 HOVERGEN:HBG036910 InParanoid:O15457
OrthoDB:EOG4DR9BS PhylomeDB:O15457 GenomeRNAi:4438 NextBio:17297
ArrayExpress:O15457 Bgee:O15457 CleanEx:HS_MSH4
Genevestigator:O15457 GermOnline:ENSG00000057468 Uniprot:O15457
Length = 936
Score = 196 (74.1 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 62/207 (29%), Positives = 101/207 (48%)
Query: 738 AAEGSAVHNT-VDMQSLFLL-TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 795
+AE +NT V S FL+ TGPN GKS+ L+ I ++ G VPAE +S
Sbjct: 658 SAEKPIANNTYVTEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAK 717
Query: 796 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 855
I + + D S+F EM EI I+ +SL+LIDE+ RGT T +G I ++
Sbjct: 718 QIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAV 777
Query: 856 IETLDNIGCLGIVSTH---LHGIFSLPLKIKNAAYKAM---GTEYLDGQTVPTWKLVDGI 909
E L ++ + +TH L I +L ++N ++ T + T+KL G+
Sbjct: 778 CEYLLSLKAFTLFATHFLELCHIDALYPNVENMHFEVQHVKNTSRNKEAILYTYKLSKGL 837
Query: 910 CRE-SLAFETAKREGVPETIIQRAEDL 935
E + + A+ +P +I+ A+++
Sbjct: 838 TEEKNYGLKAAEVSSLPPSIVLDAKEI 864
Score = 38 (18.4 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 422 TIQAICKLMSKVTCSIPEFTCLVKL 446
T +CKL+S++ CL KL
Sbjct: 592 TYMIVCKLLSEI---YEHIHCLYKL 613
>UNIPROTKB|A3KGM4 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00645968
SMR:A3KGM4 Ensembl:ENST00000427968 Ensembl:ENST00000458058
Uniprot:A3KGM4
Length = 727
Score = 181 (68.8 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 36/102 (35%), Positives = 60/102 (58%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + + G VPAE A I DAI + S +S + G S+F
Sbjct: 589 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 648
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 856
++++++ V T++SLVLIDE +GT T G + +++
Sbjct: 649 MIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVL 690
>UNIPROTKB|Q5SSQ8 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL662834 EMBL:CR936239
SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00797508 SMR:Q5SSQ8
Ensembl:ENST00000436559 Ensembl:ENST00000458144 UCSC:uc011iri.2
Uniprot:Q5SSQ8
Length = 821
Score = 181 (68.8 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 36/102 (35%), Positives = 60/102 (58%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + + G VPAE A I DAI + S +S + G S+F
Sbjct: 606 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 665
Query: 815 QVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 856
++++++ V T++SLVLIDE +GT T G + +++
Sbjct: 666 MIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVL 707
>UNIPROTKB|E2RJA9 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AAEX03004895 EMBL:AAEX03004896 Ensembl:ENSCAFT00000037908
Uniprot:E2RJA9
Length = 930
Score = 195 (73.7 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 60/207 (28%), Positives = 102/207 (49%)
Query: 738 AAEGSAVHNT-VDMQSLFLL-TGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 795
+ E +NT + S FL+ TGPN GKS+ L+ I ++ G VPAE +S +
Sbjct: 652 SVEKPIANNTYITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAE 711
Query: 796 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 855
I + + D S+F EM EI I+ ++SL+LIDE+ RGT T +G I ++
Sbjct: 712 QIFTRISTDDDIETNSSTFMKEMKEIAYILHNANNKSLILIDELGRGTSTEEGIGICYAV 771
Query: 856 IETLDNIGCLGIVSTH---LHGIFSLPLKIKNAAYKAM---GTEYLDGQTVPTWKLVDGI 909
E L ++ + +TH L I +L ++N ++ T + T+KL G+
Sbjct: 772 CEYLLSLKAFTLFATHFLELCHIEALYPNVENMHFEVQHVKDTSRNKEAILYTYKLCKGL 831
Query: 910 CRE-SLAFETAKREGVPETIIQRAEDL 935
E + + A+ +P +I+ A+++
Sbjct: 832 TEEKNYGLKAAEVSSLPPSIVLDAKEI 858
Score = 38 (18.4 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 422 TIQAICKLMSKVTCSIPEFTCLVKL 446
T +CKL+S++ CL KL
Sbjct: 586 TYMIVCKLLSEI---YEHIHCLYKL 607
>UNIPROTKB|I3L5Z8 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 EMBL:CU929611 EMBL:FP312934
Ensembl:ENSSSCT00000023892 Uniprot:I3L5Z8
Length = 902
Score = 193 (73.0 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 54/207 (26%), Positives = 99/207 (47%)
Query: 738 AAEGSAVHNT--VDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 795
+ E +NT + + ++TGPN GKS+ L+ I ++ G VPAE +S +
Sbjct: 624 SVEKPVANNTYITEGSNFVIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAE 683
Query: 796 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 855
I + + D S+F EM EI I+ +SL+LIDE+ RGT T +G I ++
Sbjct: 684 QIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAV 743
Query: 856 IETLDNIGCLGIVSTHLHGIFSLPL---KIKNAAYKAM---GTEYLDGQTVPTWKLVDGI 909
E L ++ + +TH + + + ++N ++ T + T+KL G+
Sbjct: 744 CEYLLSLKAFTLFATHFLELCHIDVLYPNVENMYFEVQHVKNTSRNKEAILYTYKLSKGL 803
Query: 910 CRE-SLAFETAKREGVPETIIQRAEDL 935
E + + A+ +P +I+ A+++
Sbjct: 804 TEEKNYGLKAAEASSLPPSIVLDAKEI 830
Score = 38 (18.4 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 422 TIQAICKLMSKVTCSIPEFTCLVKL 446
T +CKL+S++ CL KL
Sbjct: 558 TYMIVCKLLSEI---YEHIHCLYKL 579
>UNIPROTKB|F1S9R2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:CU929611
EMBL:FP312934 Ensembl:ENSSSCT00000004176 Uniprot:F1S9R2
Length = 934
Score = 193 (73.0 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 54/207 (26%), Positives = 99/207 (47%)
Query: 738 AAEGSAVHNT--VDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 795
+ E +NT + + ++TGPN GKS+ L+ I ++ G VPAE +S +
Sbjct: 656 SVEKPVANNTYITEGSNFVIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAE 715
Query: 796 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 855
I + + D S+F EM EI I+ +SL+LIDE+ RGT T +G I ++
Sbjct: 716 QIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAV 775
Query: 856 IETLDNIGCLGIVSTHLHGIFSLPL---KIKNAAYKAM---GTEYLDGQTVPTWKLVDGI 909
E L ++ + +TH + + + ++N ++ T + T+KL G+
Sbjct: 776 CEYLLSLKAFTLFATHFLELCHIDVLYPNVENMYFEVQHVKNTSRNKEAILYTYKLSKGL 835
Query: 910 CRE-SLAFETAKREGVPETIIQRAEDL 935
E + + A+ +P +I+ A+++
Sbjct: 836 TEEKNYGLKAAEASSLPPSIVLDAKEI 862
Score = 38 (18.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 422 TIQAICKLMSKVTCSIPEFTCLVKL 446
T +CKL+S++ CL KL
Sbjct: 590 TYMIVCKLLSEI---YEHIHCLYKL 611
>UNIPROTKB|A2BEX3 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133
SMR:A2BEX3 Ensembl:ENST00000444225 Uniprot:A2BEX3
Length = 467
Score = 172 (65.6 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 36/103 (34%), Positives = 60/103 (58%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + + G VPAE A I DAI + S +S + G S+F
Sbjct: 251 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 310
Query: 815 QVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 856
+++++ + V T++SLVLIDE +GT T G + +++
Sbjct: 311 MIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVL 353
>UNIPROTKB|Q7SCW0 [details] [associations]
symbol:NCU09384 "Predicted protein" species:367110
"Neurospora crassa OR74A" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 HSSP:Q56215 KO:K08741
OrthoDB:EOG4W6S4H EMBL:AABX02000082 RefSeq:XP_963830.1
ProteinModelPortal:Q7SCW0 STRING:Q7SCW0
EnsemblFungi:EFNCRT00000009472 GeneID:3879979 KEGG:ncr:NCU09384
OMA:INVICER Uniprot:Q7SCW0
Length = 506
Score = 170 (64.9 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 53/195 (27%), Positives = 86/195 (44%)
Query: 752 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 811
S +LTGPN GKS ++ + L G VP A+I D I + + ++ D +
Sbjct: 234 SALVLTGPNNSGKSIYMKQVALIIYLAHIGSYVPVTRATIGVTDRIFTRVATRETAMDDE 293
Query: 812 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE---TLDNIGCLGIV 868
S+F ++ + + T RSL+L DE +GT G + + + LD +V
Sbjct: 294 SAFMTDLKQAAFSINFATRRSLILADEFGKGTTMEAGAAVFTAYLHHFLELDADRPRMLV 353
Query: 869 STHLHGIFSLP-LKIKNA-AYKAMGT------EYLDGQTVPTWKLVDGICRESLAFETAK 920
STH H +F+ LK + AY M E + ++LV G SL A
Sbjct: 354 STHFHDVFNRGFLKPEEGVAYAHMEVRLNPEAEEREEHITYLYRLVHGRAEHSLGLMCAA 413
Query: 921 REGVPETIIQRAEDL 935
+ + +++RA D+
Sbjct: 414 INHIEDDVLKRAGDI 428
>UNIPROTKB|A8JBH4 [details] [associations]
symbol:CHLREDRAFT_106717 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
EMBL:DS496153 RefSeq:XP_001699298.1 EnsemblPlants:EDO98728
GeneID:5724848 KEGG:cre:CHLREDRAFT_106717 Uniprot:A8JBH4
Length = 111
Score = 147 (56.8 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 39/109 (35%), Positives = 57/109 (52%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSY---------- 804
L+TGPN GKS+ L+ + +L G VPA +P F A++ + +
Sbjct: 1 LVTGPNMSGKSTYLQQVGLLVVLAQAGCPVPAAHCCLPPFTALLGRLGTAMGGGAGAGGG 60
Query: 805 -DSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIA 852
D G+SSF EM + +++A RSLVL+DE+ RGT TA G +A
Sbjct: 61 ADDLESGRSSFLTEMQDAAHVLSAAGPRSLVLLDELGRGTSTADGVGLA 109
>UNIPROTKB|A3KGM6 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00978527 SMR:A3KGM6 Ensembl:ENST00000416819 Uniprot:A3KGM6
Length = 728
Score = 172 (65.6 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 36/103 (34%), Positives = 60/103 (58%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + + G VPAE A I DAI + S +S + G S+F
Sbjct: 589 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 648
Query: 815 QVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 856
+++++ + V T++SLVLIDE +GT T G + +++
Sbjct: 649 MIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVL 691
>UNIPROTKB|A3KGM5 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00893328 SMR:A3KGM5 Ensembl:ENST00000457917 Uniprot:A3KGM5
Length = 745
Score = 172 (65.6 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 36/103 (34%), Positives = 60/103 (58%)
Query: 755 LLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSF 814
++TGPN GKS L+ + + + + G VPAE A I DAI + S +S + G S+F
Sbjct: 606 VITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTF 665
Query: 815 QVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 856
+++++ + V T++SLVLIDE +GT T G + +++
Sbjct: 666 MIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVL 708
>UNIPROTKB|F1P4E2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0001541 "ovarian follicle development" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0007292 "female gamete generation" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AADN02012381 IPI:IPI00596754 Ensembl:ENSGALT00000018582
Uniprot:F1P4E2
Length = 846
Score = 171 (65.3 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 58/220 (26%), Positives = 99/220 (45%)
Query: 752 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 811
+ ++TGPN GKS+ ++ I ++ G VPAE S + I + D
Sbjct: 587 NFLIITGPNMSGKSTYIKQIALCQIMAQIGSYVPAEYCSFRIAEQIFTRIGMDDDIETNA 646
Query: 812 SSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 871
S+F EM EI I+ +SL++IDE+ RGT +G I + E L N+ + +TH
Sbjct: 647 STFMKEMKEITYIIQNANDKSLIIIDELGRGTSAEEGIGICYAACEYLLNLKAFTLFATH 706
Query: 872 ---LHGIFSLPLKIKNAAYKAMGTEYLDGQT--VPTWKLVDGICRE-SLAFETAKREGVP 925
L + +L ++N ++ G+ T+ L G E + + A+ +P
Sbjct: 707 FLELCHMDALYPNVENYHFEVQHVRSSAGKEKITYTYTLSKGYTEEKNYGLKAAEVSSLP 766
Query: 926 ETIIQRAEDL--YIACGVNCVMIAAREQPPPSIIGASCVY 963
+II A+ + +IA I R++ P ++ VY
Sbjct: 767 PSIILDAKAITNHIA-----KQILHRQRTTPEMMKHRAVY 801
Score = 52 (23.4 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 442 CLVKLLELREANHIEFCRIKNVLDEILH-MYGNSELNEILELLM 484
C L E+ ++ C++ N + E +H +Y S++ +L++L+
Sbjct: 494 CQESLREIYHMTYLIVCKLLNEIYEHIHCLYKLSDIVSMLDMLL 537
>CGD|CAL0002525 [details] [associations]
symbol:orf19.2579 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0002525 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000044 EMBL:AACQ01000043 KO:K08740
SUPFAM:SSF48334 SUPFAM:SSF53150 RefSeq:XP_718245.1
RefSeq:XP_718341.1 ProteinModelPortal:Q5A989 STRING:Q5A989
GeneID:3639992 GeneID:3640161 KEGG:cal:CaO19.10111
KEGG:cal:CaO19.2579 Uniprot:Q5A989
Length = 803
Score = 169 (64.5 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 80/309 (25%), Positives = 141/309 (45%)
Query: 635 KGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVI 694
K RK E +T+++ + RY++ +++ L + ++ T IN + +LL++
Sbjct: 437 KKRKTIE--CTTIELMKQSSRYNDI----VSEITTLNSTIIHDMYTSINS--YTPILLMV 488
Query: 695 GKAL--------FAHVSEGRRRKWVFPAL-KDIELDGANCLKMNGLSPYWFDAAEGSAVH 745
+A+ FA+ + ++ + P K++ + + + G + F A S H
Sbjct: 489 SEAIGTLDLLCSFAYFTSLQKDSYTCPEFAKEVTIMRSLHPILGGNNSN-FVANNYSCNH 547
Query: 746 NTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYD 805
++ + ++TG N GKS LR I ++ G VPAE A + F+++ + S D
Sbjct: 548 ---ELSRIHVITGANMSGKSVYLRQIAYLVIMAQMGCFVPAEYARMRIFNSLYSRISS-D 603
Query: 806 SPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCL 865
+ SSF EMSE I+ + SL+LIDE+ RG+ G I +I+E L
Sbjct: 604 NVDINASSFSKEMSETAVILNDSDGDSLILIDELGRGSSLTDGFSICLAILEDLICKEAT 663
Query: 866 GIVSTHLHGIFSLPLKIKNAAYKA-MGTEYLDGQTVPTWKLV---DGICRESLAFETAKR 921
I +TH I + L K+ A M T +GQ + LV +GI + F
Sbjct: 664 VITTTHFRDIAQV-LANKSCVVTAHMQTVETNGQLEMKYNLVLGRNGIVGYGIRFAEVSN 722
Query: 922 EGVPETIIQ 930
+P+ +I+
Sbjct: 723 L-LPQELIE 730
>TAIR|locus:2092404 [details] [associations]
symbol:MSH5 "AT3G20475" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IMP] [GO:0051026 "chiasma assembly" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=RCA] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0007059 "chromosome
segregation" evidence=RCA] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0009691
"cytokinin biosynthetic process" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0032204 "regulation
of telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GO:GO:0003684 GO:GO:0030983 GO:GO:0008094 GO:GO:0051026
EMBL:AB024036 GO:GO:0045143 GO:GO:0043073 GO:GO:0000795
SUPFAM:SSF48334 GO:GO:0032300 GO:GO:0010777 EMBL:EF471448
EMBL:AK221687 EMBL:AK230222 EMBL:BT012280 IPI:IPI00532145
RefSeq:NP_188683.3 UniGene:At.50208 ProteinModelPortal:F4JEP5
SMR:F4JEP5 EnsemblPlants:AT3G20475.1 GeneID:821593
KEGG:ath:AT3G20475 TAIR:At3g20475 KO:K08741 OMA:NDLVFFY
Uniprot:F4JEP5
Length = 807
Score = 181 (68.8 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 75/290 (25%), Positives = 131/290 (45%)
Query: 656 YHEAGAKAKAKVLELLRG---LSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVF 712
YH+ +A + +LL S+ L +N + A + ++ A AH + R
Sbjct: 473 YHKILDMERAIIRDLLSHTLLFSAHLLKAVNFV--AELDCILSLACVAHQNNYVRPVLTV 530
Query: 713 PALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSIC 772
+L DI +G + L+ + + + E + D + ++TGPN GKS ++ +
Sbjct: 531 ESLLDIR-NGRHVLQEMAVDTFIPNDTEIN------DNGRIHIITGPNYSGKSIYVKQVA 583
Query: 773 AASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRS 832
L G VPA++A++ D I M S A+ +S+F +++ ++ ++ TSRS
Sbjct: 584 LIVFLSHIGSFVPADAATVGLTDRIFCAMGSKFMTAE-QSTFMIDLHQVGMMLRQATSRS 642
Query: 833 LVLIDEICRGTETAKGTCIAGSIIETLDNIG--CLGIVSTHLHGIFS---LPL--KIKNA 885
L L+DE +GT T G + G I +V THL + + LP+ KIK
Sbjct: 643 LCLLDEFGKGTLTEDGIGLLGGTISHFATCAEPPRVVVCTHLTELLNESCLPVSEKIKFY 702
Query: 886 AYKAM--GTEYLDGQTVP-TWKLVDGICRESLAFETAKREGVPETIIQRA 932
+ TE + + + ++L+ G S A GVPE +++RA
Sbjct: 703 TMSVLRPDTESANMEEIVFLYRLIPGQTLLSYGLHCALLAGVPEEVVKRA 752
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 473 NSELNEILELLMDPTWVATGLKIDFETLVEE 503
++EL+ + EL++ V + ++TLV+E
Sbjct: 340 STELDYVYELVIGVIDVTRSKERGYQTLVKE 370
>UNIPROTKB|A8HMH7 [details] [associations]
symbol:CHLREDRAFT_146712 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 EMBL:DS496108
SUPFAM:SSF48334 GO:GO:0000710 GO:GO:0032300 GO:GO:0000404
eggNOG:COG1193 RefSeq:XP_001690145.1 ProteinModelPortal:A8HMH7
EnsemblPlants:EDP09883 GeneID:5715553 KEGG:cre:CHLREDRAFT_146712
ProtClustDB:CLSN2920816 Uniprot:A8HMH7
Length = 1204
Score = 166 (63.5 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 45/164 (27%), Positives = 83/164 (50%)
Query: 774 ASLLGICGLMVPAES-ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRS 832
A+ + GL +PAE+ A +P F A++ + S S+F + I+++ ++
Sbjct: 410 AACMAKAGLPLPAEAPARLPAFSAVLADIGDEQSLTANLSTFSGHLRRIQTLRGEADGKA 469
Query: 833 LVLIDEICRGTETAKGTCIAGSIIETLDN----IGCLGIVSTHLHGIFSLPLKIKNAAYK 888
L+L+DE+ GT+ +G + ++++ L N G L + +TH H I + LK + ++
Sbjct: 470 LLLLDELGTGTDPLEGAALGLALLKRLVNGGVGAGALTVATTH-HSIMT-GLKFDDPRFE 527
Query: 889 AMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 932
E+ + PT+KL+ GI S A A R G+ E ++ A
Sbjct: 528 NASVEFDEAALAPTYKLLWGIPGRSNALNIASRLGLDEEVVSAA 571
>UNIPROTKB|Q7NE77 [details] [associations]
symbol:gll4003 "Gll4003 protein" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 GO:GO:0008094
EMBL:BA000045 GenomeReviews:BA000045_GR SUPFAM:SSF48334 HSSP:Q56215
GO:GO:0032300 RefSeq:NP_926949.1 ProteinModelPortal:Q7NE77
GeneID:2602406 KEGG:gvi:gll4003 PATRIC:22047503
HOGENOM:HOG000022931 OMA:ESYFFAE ProtClustDB:CLSK923279
BioCyc:GVIO251221:GH9A-4052-MONOMER Uniprot:Q7NE77
Length = 619
Score = 160 (61.4 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 45/131 (34%), Positives = 66/131 (50%)
Query: 752 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGK 811
+ L+TG N GKS+LLRSI +L + G V A S +P + M+ DS A G
Sbjct: 427 TFLLVTGSNMSGKSTLLRSIGLNIVLALAGAPVCARSLRLPPV-TLKTSMRVQDSLASGL 485
Query: 812 SSFQVEMSEIRSIVTAT--TSRSLV-LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIV 868
S + E+ ++ +V A R L+ L+DEI GT +A+ ++ L G LG +
Sbjct: 486 SFYMAELQRLKEVVDAARPAERPLLYLLDEILLGTNSAERQVAVRRVLSFLLGRGALGAI 545
Query: 869 STHLHGIFSLP 879
STH + LP
Sbjct: 546 STHDLALADLP 556
>SGD|S000002313 [details] [associations]
symbol:MSH5 "Protein of the MutS family" species:4932
"Saccharomyces cerevisiae" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IEA;IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0003674 "molecular_function"
evidence=ND] [GO:0006298 "mismatch repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002313
GO:GO:0005524 EMBL:BK006938 GO:GO:0006298 GO:GO:0030983 EMBL:X97751
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741
GeneTree:ENSGT00550000074977 EMBL:L42517 EMBL:Z74202 PIR:S67702
RefSeq:NP_010127.1 ProteinModelPortal:Q12175 DIP:DIP-1457N
IntAct:Q12175 MINT:MINT-388063 STRING:Q12175 PRIDE:Q12175
EnsemblFungi:YDL154W GeneID:851401 KEGG:sce:YDL154W CYGD:YDL154w
HOGENOM:HOG000113662 OMA:SAFMIDL OrthoDB:EOG4W6S4H NextBio:968570
Genevestigator:Q12175 GermOnline:YDL154W Uniprot:Q12175
Length = 901
Score = 160 (61.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 81/331 (24%), Positives = 148/331 (44%)
Query: 643 WFSTLKVEEALERYHEA-GAKAKAKVLELLRGLSSE-LQTKINILVFASMLLVIGKAL-F 699
+F +V E E Y + GA + ++ E+L L + L+ K + + +L + L F
Sbjct: 517 YFKNGRVLELDETYGDIYGAISDFEI-EILFSLQEQILRRKTQLTAYNILLSELEILLSF 575
Query: 700 AHVSEGRRRKWVFPALKDIE-----LDGANCLKMNGLSPYWFDAA--EGSAVHNTVDMQS 752
A VS R + P L + E ++G + L L Y ++ +G +
Sbjct: 576 AQVSA--ERNYAEPQLVEDECILEIINGRHALYETFLDNYIPNSTMIDGGLFSELSWCEQ 633
Query: 753 ----LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 808
+ ++TG N GKS L L G VPAE A I D I+ +++ ++
Sbjct: 634 NKGRIIVVTGANASGKSVYLTQNGLIVYLAQIGCFVPAERARIGIADKILTRIRTQETVY 693
Query: 809 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG-CLGI 867
+SSF ++ ++ ++ T +SL+LIDE +GT+ G + GSI+ + C I
Sbjct: 694 KTQSSFLLDSQQMAKSLSLATEKSLILIDEYGKGTDILDGPSLFGSIMLNMSKSEKCPRI 753
Query: 868 VS-THLHGIFSLPLKIKNA-AYKAMGTEYLDGQT---VPTWKLVDGICRESLAFETAKRE 922
++ TH H +F+ + +N K T+ L Q + T + + E + F +E
Sbjct: 754 IACTHFHELFNENVLTENIKGIKHYCTDILISQKYNLLETAHVGEDHESEGITFLFKVKE 813
Query: 923 GVPETIIQRAEDLYIA--CGVNCVMIAAREQ 951
G+ + ++ +Y A CG++ ++ E+
Sbjct: 814 GISK----QSFGIYCAKVCGLSRDIVERAEE 840
>UNIPROTKB|Q8A4A6 [details] [associations]
symbol:BT_2697 "DNA mismatch repair protein mutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0008094 SUPFAM:SSF48334 HSSP:Q56215 GO:GO:0032300
HOGENOM:HOG000022931 OMA:ESYFFAE RefSeq:NP_811609.1
ProteinModelPortal:Q8A4A6 GeneID:1072523 KEGG:bth:BT_2697
PATRIC:21060335 ProtClustDB:CLSK823265
BioCyc:BTHE226186:GJXV-2751-MONOMER Uniprot:Q8A4A6
Length = 604
Score = 146 (56.5 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 47/191 (24%), Positives = 95/191 (49%)
Query: 744 VHNTVDMQS---LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDA-IML 799
V N +DM+ ++TG N GKS+ LR++ LL G P +A + F A ++
Sbjct: 414 VRNGIDMEKRPFFIIITGANMAGKSTYLRTVGVNYLLACIG--APVWAAKMEIFPARLVT 471
Query: 800 HMKSYDSPADGKSSFQVEMSEIRSIVTATTSRS--LVLIDEICRGTETAKGTCIAGSIIE 857
+++ DS D +S F E+ ++ I+ + +++DEI +GT + + ++I+
Sbjct: 472 SLRTSDSLTDNESYFFAELKRLKLIIDKLKAGEELFIILDEILKGTNSMDKQKGSFALIK 531
Query: 858 TLDNIGCLGIVSTH--LHG--IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRES 913
++ GI++TH L G I + P I+N ++A + + + ++++ G+ +
Sbjct: 532 QFMSMDANGIIATHDLLLGTLIDAFPQNIRNYCFEA---DITNNELTFSYQMRSGVAQNM 588
Query: 914 LAFETAKREGV 924
A K+ G+
Sbjct: 589 NACFLMKKMGI 599
Score = 55 (24.4 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 25/73 (34%), Positives = 36/73 (49%)
Query: 102 VNRL-KYSNLLGLDVNLKNGSLKEGTLNWEMLQFKS--KFPREVLLCRVGDFYEAIG-ID 157
V+RL K N L NL ++ G L WE+ Q K+ +E + + EAIG ID
Sbjct: 313 VHRLAKLMNALDQRGNLLMSTILNGLLFWELRQVMQIEKW-KEAHSADLPRWIEAIGAID 371
Query: 158 A-CILVEYAGLNP 169
A C L ++ +P
Sbjct: 372 AYCSLATFSYNHP 384
>TIGR_CMR|CJE_1196 [details] [associations]
symbol:CJE_1196 "DNA mismatch repair protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006259 "DNA metabolic process"
evidence=ISS] InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 PIRSF:PIRSF005814 SMART:SM00533
SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0030983 PROSITE:PS50828 GO:GO:0045005 eggNOG:COG1193
KO:K07456 ProtClustDB:PRK00409 PANTHER:PTHR11361:SF14
RefSeq:YP_179186.1 ProteinModelPortal:Q5HU49 STRING:Q5HU49
GeneID:3231705 KEGG:cjr:CJE1196 PATRIC:20044188
HOGENOM:HOG000102093 OMA:KIEFVSG
BioCyc:CJEJ195099:GJC0-1223-MONOMER Uniprot:Q5HU49
Length = 735
Score = 159 (61.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 52/192 (27%), Positives = 93/192 (48%)
Query: 751 QSLFLLTGPNGGGKSSLLRSICAASLLG--ICGLMVPAESASI---PYFDAIMLHMKSYD 805
+ + ++TG N GGKS LL+S+ +A+ L + + + A + I FDAI+ +
Sbjct: 304 KQVLIITGVNAGGKSMLLKSMLSAAFLAKHLLPMHIKASESKIGTFKEFDAII------E 357
Query: 806 SPADGKSSFQVEMSEIRSIVTATTSRSLVL-IDEICRGTETAKGTCIAGSIIETLDNIGC 864
P + K+ + + ++L+L IDEI GT+ + C+ +I L
Sbjct: 358 DPQNVKNDISTFAGRMLHFSRLFSKKNLLLGIDEIELGTDFEEAACLYSVLISKLIANNL 417
Query: 865 LGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGV 924
I++TH H ++ L KN + + Y + + P ++ + G +S AFETA R +
Sbjct: 418 KIIITTH-HKRLAM-LLAKNEQVELIAALYDEELSRPKYEFLKGTIGKSYAFETALRYQI 475
Query: 925 PETIIQRAEDLY 936
P ++ A+ LY
Sbjct: 476 PPNLVGEAKKLY 487
Score = 40 (19.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 947 AAREQPPPSIIG-ASCVYVMLRPDKKLYIGQTDDLDGRIRA 986
A R Q PP+++G A +Y + + + +G+ +L+ ++A
Sbjct: 470 ALRYQIPPNLVGEAKKLYGEDKENLEELVGKNINLELELKA 510
>SGD|S000001891 [details] [associations]
symbol:MSH4 "Protein involved in meiotic recombination"
species:4932 "Saccharomyces cerevisiae" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;IPI]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983 "mismatched
DNA binding" evidence=IEA;IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IRD]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001891 GO:GO:0005524 EMBL:D50617
EMBL:BK006940 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U13999
PIR:A55201 RefSeq:NP_116652.1 ProteinModelPortal:P40965 SMR:P40965
DIP:DIP-2426N IntAct:P40965 MINT:MINT-565232 STRING:P40965
EnsemblFungi:YFL003C GeneID:850545 KEGG:sce:YFL003C
HOGENOM:HOG000094365 OMA:MSGKSVY OrthoDB:EOG4VHPFT NextBio:966313
Genevestigator:P40965 GermOnline:YFL003C Uniprot:P40965
Length = 878
Score = 150 (57.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 47/179 (26%), Positives = 84/179 (46%)
Query: 742 SAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHM 801
+ + +T SL ++TG N GKS L+ + ++ G +PA S P F LH
Sbjct: 618 NTISSTKHSSSLQIITGCNMSGKSVYLKQVALICIMAQMGSGIPALYGSFPVFKR--LHA 675
Query: 802 K-SYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 860
+ DS S+F EM E+ + + +L+++DE+ RG+ A G C++ ++ E L
Sbjct: 676 RVCNDSMELTSSNFGFEMKEMAYFLDDINTETLLILDELGRGSSIADGFCVSLAVTEHLL 735
Query: 861 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETA 919
+STH I + K ++ M L+ +V K+ + ++S+A E +
Sbjct: 736 RTEATVFLSTHFQDIPKIMSKKPAVSHLHMDAVLLNDNSV---KMNYQLTQKSVAIENS 791
>UNIPROTKB|Q0DJI9 [details] [associations]
symbol:Os05g0274200 "Os05g0274200 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005886 GO:GO:0005524
GO:GO:0003684 EMBL:AP008211 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0008094
GO:GO:0006311 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 KO:K08735 ProtClustDB:CLSN2680872
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:NP_001055070.2
UniGene:Os.18121 STRING:Q0DJI9 EnsemblPlants:LOC_Os05g19270.1
GeneID:4338271 KEGG:osa:4338271 Gramene:Q0DJI9 Uniprot:Q0DJI9
Length = 113
Score = 118 (46.6 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 776 LLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVL 835
L+ G VP + ASI D I + + D G S+F EM E SI+ + +SL++
Sbjct: 21 LMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGASDKSLII 80
Query: 836 IDEICRGTETAKG 848
IDE+ RGT T G
Sbjct: 81 IDELGRGTSTYDG 93
>UNIPROTKB|B1N483 [details] [associations]
symbol:EHI_019060 "DNA mismatch repair protein mutS,
putative" species:5759 "Entamoeba histolytica" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 EMBL:DS571351 RefSeq:XP_001913998.1
ProteinModelPortal:B1N483 STRING:B1N483 GeneID:6219997
KEGG:ehi:EHI_019060 EuPathDB:AmoebaDB:EHI_019060 InParanoid:B1N483
Uniprot:B1N483
Length = 225
Score = 132 (51.5 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 46/166 (27%), Positives = 73/166 (43%)
Query: 775 SLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLV 834
+LLG CG V A +A IP F I S DS S+F + S + + + ++ SL+
Sbjct: 2 ALLG-CG--VCASNAQIPLFSHIFTKFSSSDSSLSSLSAFTTDCSLLSTSLRHLSNDSLL 58
Query: 835 LIDEICRGTETAKGTCIAGSIIETLDNIGCLG---IVSTHLHGIFSLPLKIKNAAYKAMG 891
LIDE +GT + G + + + L ++G I+STH F + + M
Sbjct: 59 LIDEFGKGTHPSDGLALFIATLRYLQSLGSNAPKTIISTHFISFFHY-IDLNKCVPLKMD 117
Query: 892 TEYLDGQTVPT--WKLVDGICRESLAFETAKREGVPETIIQRAEDL 935
T + LV+GI S A+ +P ++I RA +
Sbjct: 118 VLLNQSNNSITFLYHLVNGISDSSYGIHCARLAHLPSSLISRASQI 163
>WB|WBGene00003420 [details] [associations]
symbol:msh-4 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] InterPro:IPR000432
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 GeneTree:ENSGT00550000074897
EMBL:FO081112 HSSP:Q56215 PIR:T16784 RefSeq:NP_495458.1
UniGene:Cel.32838 ProteinModelPortal:Q22103 SMR:Q22103
STRING:Q22103 EnsemblMetazoa:T02G5.6 GeneID:191708
KEGG:cel:CELE_T02G5.6 UCSC:T02G5.6 CTD:191708 WormBase:T02G5.6
InParanoid:Q22103 OMA:ESAHILR NextBio:950048 Uniprot:Q22103
Length = 107
Score = 103 (41.3 bits), Expect = 0.00024, P = 0.00024
Identities = 30/98 (30%), Positives = 46/98 (46%)
Query: 811 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVST 870
KS+F EMS+ +IV SLV++DE+ R T T +G I +I E + + ++T
Sbjct: 11 KSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVLKLHSYTFLAT 70
Query: 871 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDG 908
H I +L NA +D + KL+ G
Sbjct: 71 HFLDIAALA-NYSNAIDNYHFLPQIDDNSTKKHKLLRG 107
>UNIPROTKB|Q22103 [details] [associations]
symbol:msh-4 "Protein MSH-4" species:6239 "Caenorhabditis
elegans" [GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 GeneTree:ENSGT00550000074897
EMBL:FO081112 HSSP:Q56215 PIR:T16784 RefSeq:NP_495458.1
UniGene:Cel.32838 ProteinModelPortal:Q22103 SMR:Q22103
STRING:Q22103 EnsemblMetazoa:T02G5.6 GeneID:191708
KEGG:cel:CELE_T02G5.6 UCSC:T02G5.6 CTD:191708 WormBase:T02G5.6
InParanoid:Q22103 OMA:ESAHILR NextBio:950048 Uniprot:Q22103
Length = 107
Score = 103 (41.3 bits), Expect = 0.00024, P = 0.00024
Identities = 30/98 (30%), Positives = 46/98 (46%)
Query: 811 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVST 870
KS+F EMS+ +IV SLV++DE+ R T T +G I +I E + + ++T
Sbjct: 11 KSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVLKLHSYTFLAT 70
Query: 871 HLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDG 908
H I +L NA +D + KL+ G
Sbjct: 71 HFLDIAALA-NYSNAIDNYHFLPQIDDNSTKKHKLLRG 107
>UNIPROTKB|A8JDD7 [details] [associations]
symbol:CHLREDRAFT_121781 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 Pfam:PF00488 PROSITE:PS00486 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 EMBL:DS496161 RefSeq:XP_001700459.1 STRING:A8JDD7
EnsemblPlants:EDO98148 GeneID:5726009 KEGG:cre:CHLREDRAFT_121781
Uniprot:A8JDD7
Length = 96
Score = 99 (39.9 bits), Expect = 0.00065, P = 0.00065
Identities = 23/94 (24%), Positives = 49/94 (52%)
Query: 763 GKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIR 822
GKS R++ + L G VPA++A+I D I + A +F +++++
Sbjct: 2 GKSCYARAVALIAYLAHLGSYVPAQAATIGLADRIAARCATPPLGA-ATVTFMADLTQVS 60
Query: 823 SIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 856
+++ T R+L+++DE +GT + G + +++
Sbjct: 61 AMLRTATERTLLVLDEFGKGTLASDGVGLCAALL 94
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1051 1038 0.00082 123 3 11 22 0.38 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 176
No. of states in DFA: 633 (67 KB)
Total size of DFA: 481 KB (2224 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 86.21u 0.15s 86.36t Elapsed: 00:00:05
Total cpu time: 86.25u 0.15s 86.40t Elapsed: 00:00:05
Start: Tue May 21 04:23:19 2013 End: Tue May 21 04:23:24 2013
WARNINGS ISSUED: 1