Query 001570
Match_columns 1051
No_of_seqs 625 out of 4662
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:05:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0249 MutS Mismatch repair A 100.0 7E-112 1E-116 1039.4 55.7 733 126-942 8-799 (843)
2 TIGR01070 mutS1 DNA mismatch r 100.0 2E-109 4E-114 1029.5 53.9 740 126-942 3-784 (840)
3 PRK05399 DNA mismatch repair p 100.0 8E-106 2E-110 1002.8 57.1 731 126-941 10-798 (854)
4 KOG0218 Mismatch repair MSH3 [ 100.0 3.2E-77 6.8E-82 677.9 27.9 758 126-942 164-1030(1070)
5 KOG0217 Mismatch repair ATPase 100.0 3.3E-75 7.1E-80 687.7 33.0 800 91-943 212-1093(1125)
6 KOG0219 Mismatch repair ATPase 100.0 8.7E-55 1.9E-59 505.7 27.4 747 138-945 29-840 (902)
7 PRK00409 recombination and DNA 100.0 7.4E-50 1.6E-54 494.6 37.6 481 392-939 16-514 (782)
8 TIGR01069 mutS2 MutS2 family p 100.0 2.3E-46 5E-51 462.3 36.8 478 394-939 18-509 (771)
9 KOG0220 Mismatch repair ATPase 100.0 1.3E-43 2.8E-48 406.6 23.7 529 380-964 270-833 (867)
10 KOG0221 Mismatch repair ATPase 100.0 4.1E-40 9E-45 371.2 23.6 511 371-943 237-797 (849)
11 PF00488 MutS_V: MutS domain V 100.0 5E-40 1.1E-44 355.2 15.5 226 710-940 1-233 (235)
12 cd03286 ABC_MSH6_euk MutS6 hom 100.0 6.2E-37 1.3E-41 326.8 16.6 193 740-932 15-218 (218)
13 cd03285 ABC_MSH2_euk MutS2 hom 100.0 1.5E-35 3.2E-40 318.3 19.8 200 740-939 15-221 (222)
14 cd03287 ABC_MSH3_euk MutS3 hom 100.0 1.6E-35 3.6E-40 316.8 17.0 193 740-932 16-222 (222)
15 cd03284 ABC_MutS1 MutS1 homolo 100.0 8.6E-35 1.9E-39 311.2 19.0 211 719-936 2-216 (216)
16 smart00534 MUTSac ATPase domai 100.0 5.8E-34 1.3E-38 298.1 14.8 184 753-936 1-185 (185)
17 cd03282 ABC_MSH4_euk MutS4 hom 100.0 4.2E-33 9.2E-38 295.2 17.9 184 740-923 14-203 (204)
18 cd03281 ABC_MSH5_euk MutS5 hom 100.0 2.5E-32 5.4E-37 291.7 17.6 184 741-924 15-213 (213)
19 cd03283 ABC_MutS-like MutS-lik 100.0 2.4E-31 5.2E-36 281.2 17.9 184 740-924 12-199 (199)
20 cd03243 ABC_MutS_homologs The 100.0 4.3E-31 9.4E-36 280.3 17.1 185 740-924 16-202 (202)
21 KOG0217 Mismatch repair ATPase 100.0 4.9E-33 1.1E-37 330.7 0.0 919 107-1039 20-1105(1125)
22 COG1193 Mismatch repair ATPase 100.0 1.6E-30 3.4E-35 316.1 19.3 301 621-938 196-501 (753)
23 cd03280 ABC_MutS2 MutS2 homolo 100.0 1.6E-30 3.4E-35 275.6 16.1 183 740-924 14-200 (200)
24 PF01624 MutS_I: MutS domain I 100.0 2.3E-29 5E-34 242.2 7.5 108 127-234 3-112 (113)
25 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.9E-22 4.1E-27 216.7 13.0 158 733-892 9-218 (254)
26 COG1126 GlnQ ABC-type polar am 99.9 2.5E-22 5.3E-27 207.2 12.5 149 740-891 13-212 (240)
27 COG4152 ABC-type uncharacteriz 99.9 4.4E-22 9.6E-27 207.6 11.6 141 740-882 13-200 (300)
28 COG1116 TauB ABC-type nitrate/ 99.9 9.1E-22 2E-26 208.7 13.4 138 741-878 15-196 (248)
29 COG1120 FepC ABC-type cobalami 99.9 1.3E-21 2.7E-26 211.4 14.3 154 736-891 10-218 (258)
30 COG1131 CcmA ABC-type multidru 99.9 5.1E-21 1.1E-25 214.1 15.6 152 741-893 17-218 (293)
31 COG1136 SalX ABC-type antimicr 99.8 1.5E-20 3.2E-25 199.4 14.3 148 742-889 18-219 (226)
32 PRK13537 nodulation ABC transp 99.8 5.2E-20 1.1E-24 207.6 14.0 152 741-893 19-219 (306)
33 COG1125 OpuBA ABC-type proline 99.8 3.6E-20 7.9E-25 194.6 11.5 144 740-883 12-207 (309)
34 COG3842 PotA ABC-type spermidi 99.8 3.7E-20 8.1E-25 208.3 11.9 174 740-923 16-238 (352)
35 PRK13536 nodulation factor exp 99.8 8E-20 1.7E-24 208.5 14.5 153 740-893 52-253 (340)
36 COG1127 Ttg2A ABC-type transpo 99.8 4.1E-20 9E-25 193.6 10.7 152 740-893 19-227 (263)
37 COG3839 MalK ABC-type sugar tr 99.8 5.9E-20 1.3E-24 205.6 12.2 176 744-929 18-241 (338)
38 COG1118 CysA ABC-type sulfate/ 99.8 6.2E-20 1.3E-24 197.9 11.2 232 741-989 14-300 (345)
39 TIGR01188 drrA daunorubicin re 99.8 1.3E-19 2.7E-24 204.3 14.2 150 741-891 5-203 (302)
40 COG2884 FtsE Predicted ATPase 99.8 1.7E-19 3.6E-24 182.4 13.4 143 736-879 9-203 (223)
41 COG4555 NatA ABC-type Na+ tran 99.8 4.1E-20 8.9E-25 188.1 9.1 147 742-890 15-211 (245)
42 cd03226 ABC_cobalt_CbiO_domain 99.8 2.7E-19 5.9E-24 190.3 14.8 139 742-881 13-195 (205)
43 TIGR00960 3a0501s02 Type II (G 99.8 2.3E-19 5.1E-24 192.3 14.1 138 742-880 16-206 (216)
44 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 2.4E-19 5.2E-24 192.4 14.1 138 742-880 17-208 (218)
45 cd03293 ABC_NrtD_SsuB_transpor 99.8 4.1E-19 8.9E-24 191.0 15.0 144 742-885 17-205 (220)
46 COG3638 ABC-type phosphate/pho 99.8 2.1E-19 4.5E-24 187.9 11.5 156 737-893 12-229 (258)
47 cd03265 ABC_DrrA DrrA is the A 99.8 5.4E-19 1.2E-23 190.1 14.2 149 741-890 12-210 (220)
48 TIGR01288 nodI ATP-binding ABC 99.8 4.4E-19 9.6E-24 200.0 13.9 150 741-891 16-214 (303)
49 cd03292 ABC_FtsE_transporter F 99.8 4.9E-19 1.1E-23 189.3 13.5 136 741-877 13-200 (214)
50 PRK11650 ugpC glycerol-3-phosp 99.8 4.5E-19 9.7E-24 203.6 13.9 152 740-891 15-214 (356)
51 TIGR02673 FtsE cell division A 99.8 5.6E-19 1.2E-23 189.0 13.7 136 741-877 14-201 (214)
52 cd03259 ABC_Carb_Solutes_like 99.8 6.7E-19 1.4E-23 188.4 14.2 141 741-882 12-201 (213)
53 TIGR01166 cbiO cobalt transpor 99.8 5.5E-19 1.2E-23 185.7 12.8 135 740-875 3-189 (190)
54 TIGR03265 PhnT2 putative 2-ami 99.8 7.1E-19 1.5E-23 201.8 14.8 151 741-891 16-214 (353)
55 cd03268 ABC_BcrA_bacitracin_re 99.8 9.5E-19 2.1E-23 186.5 14.4 143 741-884 12-198 (208)
56 cd03225 ABC_cobalt_CbiO_domain 99.8 7.4E-19 1.6E-23 187.7 13.5 136 742-878 14-199 (211)
57 PRK11247 ssuB aliphatic sulfon 99.8 1.2E-18 2.6E-23 191.8 15.4 150 741-890 24-212 (257)
58 PRK11432 fbpC ferric transport 99.8 1.1E-18 2.3E-23 200.1 15.6 151 741-891 18-216 (351)
59 TIGR02211 LolD_lipo_ex lipopro 99.8 1.2E-18 2.5E-23 187.5 14.9 137 742-879 18-208 (221)
60 cd03261 ABC_Org_Solvent_Resist 99.8 1E-18 2.2E-23 189.8 14.5 148 741-889 12-214 (235)
61 TIGR01186 proV glycine betaine 99.8 7.7E-19 1.7E-23 201.4 14.1 151 740-890 4-208 (363)
62 cd03214 ABC_Iron-Siderophores_ 99.8 1.1E-18 2.3E-23 182.1 13.8 142 742-885 12-171 (180)
63 cd03269 ABC_putative_ATPase Th 99.8 1.3E-18 2.8E-23 185.7 14.7 141 741-882 12-198 (210)
64 TIGR02314 ABC_MetN D-methionin 99.8 1.4E-18 3.1E-23 198.1 15.8 148 742-890 18-219 (343)
65 cd03256 ABC_PhnC_transporter A 99.8 1.1E-18 2.4E-23 190.1 14.2 142 742-884 14-217 (241)
66 TIGR03522 GldA_ABC_ATP gliding 99.8 1E-18 2.2E-23 196.9 14.0 149 741-891 14-211 (301)
67 PRK11629 lolD lipoprotein tran 99.8 2E-18 4.3E-23 187.4 15.8 137 742-879 22-212 (233)
68 smart00533 MUTSd DNA-binding d 99.8 8E-18 1.7E-22 189.8 21.3 278 388-718 2-292 (308)
69 cd03218 ABC_YhbG The ABC trans 99.8 1.1E-18 2.5E-23 188.9 13.7 147 741-888 12-209 (232)
70 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 2.1E-18 4.5E-23 187.6 15.7 140 741-881 13-201 (236)
71 cd03219 ABC_Mj1267_LivG_branch 99.8 1.1E-18 2.4E-23 189.5 13.6 148 741-889 12-220 (236)
72 TIGR02315 ABC_phnC phosphonate 99.8 1.1E-18 2.4E-23 190.4 13.6 140 741-881 14-215 (243)
73 PRK09536 btuD corrinoid ABC tr 99.8 1.2E-18 2.6E-23 202.3 14.5 151 740-891 14-218 (402)
74 cd03263 ABC_subfamily_A The AB 99.8 1.3E-18 2.8E-23 187.0 13.6 146 742-889 15-209 (220)
75 cd03301 ABC_MalK_N The N-termi 99.8 1.5E-18 3.2E-23 185.6 13.8 140 741-881 12-200 (213)
76 cd03258 ABC_MetN_methionine_tr 99.8 1.6E-18 3.4E-23 188.1 14.1 147 743-890 19-219 (233)
77 PRK13647 cbiO cobalt transport 99.8 1.7E-18 3.6E-23 192.6 14.5 150 740-890 16-216 (274)
78 COG1137 YhbG ABC-type (unclass 99.8 2.3E-19 5E-24 182.5 6.8 153 740-893 15-220 (243)
79 COG1117 PstB ABC-type phosphat 99.8 7.2E-19 1.6E-23 180.8 10.3 138 740-880 18-215 (253)
80 COG1122 CbiO ABC-type cobalt t 99.8 1.3E-18 2.9E-23 187.6 12.8 146 735-881 10-208 (235)
81 PRK10584 putative ABC transpor 99.8 2.3E-18 5.1E-23 186.1 14.8 138 743-881 24-215 (228)
82 PRK10908 cell division protein 99.8 2.1E-18 4.6E-23 185.7 14.4 137 741-878 14-202 (222)
83 PRK11000 maltose/maltodextrin 99.8 1.5E-18 3.2E-23 200.5 14.1 150 741-890 15-212 (369)
84 PRK13644 cbiO cobalt transport 99.8 2E-18 4.4E-23 191.9 14.3 149 740-889 13-212 (274)
85 TIGR03608 L_ocin_972_ABC putat 99.8 2.1E-18 4.6E-23 183.4 13.7 138 741-879 10-200 (206)
86 cd03262 ABC_HisP_GlnQ_permease 99.8 2E-18 4.3E-23 184.5 13.5 140 741-881 12-204 (213)
87 TIGR03258 PhnT 2-aminoethylpho 99.8 1.8E-18 3.9E-23 198.8 14.1 150 741-891 17-218 (362)
88 cd03266 ABC_NatA_sodium_export 99.8 2.3E-18 4.9E-23 184.9 13.9 138 743-881 19-205 (218)
89 PRK09452 potA putrescine/sperm 99.8 1.9E-18 4.1E-23 199.4 14.2 151 741-891 26-224 (375)
90 cd03224 ABC_TM1139_LivF_branch 99.8 2E-18 4.3E-23 185.7 13.2 147 741-888 12-208 (222)
91 cd03246 ABCC_Protease_Secretio 99.8 3.2E-18 7E-23 177.3 13.7 124 742-880 15-163 (173)
92 PRK11607 potG putrescine trans 99.8 2.8E-18 6.1E-23 198.3 14.6 151 741-891 31-229 (377)
93 PRK11153 metN DL-methionine tr 99.8 4E-18 8.7E-23 195.2 15.7 149 741-890 17-219 (343)
94 cd03294 ABC_Pro_Gly_Bertaine T 99.8 4.3E-18 9.2E-23 188.8 15.3 147 740-887 35-236 (269)
95 COG1135 AbcC ABC-type metal io 99.8 2.3E-18 5E-23 186.3 12.7 137 742-878 19-207 (339)
96 PRK13637 cbiO cobalt transport 99.8 4.9E-18 1.1E-22 190.1 15.7 149 742-891 20-224 (287)
97 cd03235 ABC_Metallic_Cations A 99.8 3.1E-18 6.7E-23 183.2 13.3 140 741-881 11-201 (213)
98 PRK09493 glnQ glutamine ABC tr 99.8 4.7E-18 1E-22 185.3 14.9 147 741-888 13-212 (240)
99 PRK10851 sulfate/thiosulfate t 99.8 3.8E-18 8.2E-23 195.8 14.8 151 741-891 14-216 (353)
100 cd03296 ABC_CysA_sulfate_impor 99.8 3.3E-18 7.2E-23 186.3 13.7 147 741-888 14-213 (239)
101 TIGR03410 urea_trans_UrtE urea 99.8 3.1E-18 6.8E-23 185.4 13.2 147 741-888 12-208 (230)
102 PRK11248 tauB taurine transpor 99.8 4.9E-18 1.1E-22 186.9 14.6 141 741-882 13-199 (255)
103 cd03267 ABC_NatA_like Similar 99.8 5.5E-18 1.2E-22 184.4 14.7 146 740-885 32-227 (236)
104 PRK11300 livG leucine/isoleuci 99.8 5.7E-18 1.2E-22 186.2 15.0 143 741-884 17-226 (255)
105 PRK11264 putative amino-acid A 99.8 6E-18 1.3E-22 185.5 15.1 148 741-889 15-221 (250)
106 TIGR03415 ABC_choXWV_ATP choli 99.8 3.6E-18 7.9E-23 196.8 14.0 152 740-891 35-244 (382)
107 TIGR03740 galliderm_ABC gallid 99.8 5.5E-18 1.2E-22 182.6 14.5 149 741-890 12-202 (223)
108 cd03238 ABC_UvrA The excision 99.8 4E-18 8.7E-23 176.7 12.8 136 741-881 7-157 (176)
109 cd03260 ABC_PstB_phosphate_tra 99.8 7.6E-18 1.6E-22 182.0 15.5 148 741-890 12-218 (227)
110 PRK13538 cytochrome c biogenes 99.8 4.7E-18 1E-22 180.7 13.4 139 741-880 13-196 (204)
111 cd03237 ABC_RNaseL_inhibitor_d 99.8 3.6E-18 7.8E-23 186.8 12.8 127 751-877 25-180 (246)
112 PRK10070 glycine betaine trans 99.8 4.6E-18 9.9E-23 197.3 14.2 150 740-889 39-242 (400)
113 PRK13638 cbiO cobalt transport 99.8 4.8E-18 1E-22 188.6 13.7 148 741-889 13-213 (271)
114 cd03295 ABC_OpuCA_Osmoprotecti 99.8 8.1E-18 1.8E-22 183.6 15.2 146 742-888 14-212 (242)
115 PRK10895 lipopolysaccharide AB 99.8 7E-18 1.5E-22 184.0 14.7 147 741-888 15-213 (241)
116 PRK13650 cbiO cobalt transport 99.8 7.1E-18 1.5E-22 188.1 14.9 147 742-889 20-217 (279)
117 PRK13635 cbiO cobalt transport 99.8 7.1E-18 1.5E-22 188.0 14.9 148 741-889 19-217 (279)
118 cd03264 ABC_drug_resistance_li 99.8 6.3E-18 1.4E-22 180.6 13.9 139 741-882 12-199 (211)
119 PRK13652 cbiO cobalt transport 99.8 5.3E-18 1.2E-22 188.8 13.8 150 740-890 15-216 (277)
120 PRK13633 cobalt transporter AT 99.8 5.2E-18 1.1E-22 189.3 13.5 140 742-882 23-214 (280)
121 COG1124 DppF ABC-type dipeptid 99.8 4.5E-18 9.8E-23 179.2 12.2 150 743-893 21-223 (252)
122 PRK11831 putative ABC transpor 99.8 9.5E-18 2E-22 186.1 15.4 140 741-881 19-213 (269)
123 PRK13636 cbiO cobalt transport 99.7 6.4E-18 1.4E-22 188.8 14.0 153 737-890 14-220 (283)
124 cd03227 ABC_Class2 ABC-type Cl 99.7 5.3E-18 1.1E-22 173.9 12.3 124 743-880 11-148 (162)
125 PRK15056 manganese/iron transp 99.7 7.9E-18 1.7E-22 187.0 14.6 141 739-880 17-210 (272)
126 PRK13548 hmuV hemin importer A 99.7 6.2E-18 1.3E-22 186.4 13.5 142 741-882 14-211 (258)
127 PRK13540 cytochrome c biogenes 99.7 8.8E-18 1.9E-22 178.1 14.1 140 741-881 13-195 (200)
128 TIGR03411 urea_trans_UrtD urea 99.7 8.6E-18 1.9E-22 183.3 14.5 147 741-889 14-219 (242)
129 cd03231 ABC_CcmA_heme_exporter 99.7 7.5E-18 1.6E-22 178.8 13.5 135 741-876 12-188 (201)
130 cd03230 ABC_DR_subfamily_A Thi 99.7 7E-18 1.5E-22 174.8 12.9 126 742-880 13-163 (173)
131 PRK13648 cbiO cobalt transport 99.7 7E-18 1.5E-22 187.1 13.6 139 742-881 22-211 (269)
132 PRK13639 cbiO cobalt transport 99.7 1E-17 2.3E-22 186.3 14.9 148 741-889 14-214 (275)
133 PRK13641 cbiO cobalt transport 99.7 9.7E-18 2.1E-22 187.7 14.6 147 742-889 20-222 (287)
134 PRK13539 cytochrome c biogenes 99.7 9E-18 1.9E-22 179.0 13.7 137 741-878 14-192 (207)
135 cd03216 ABC_Carb_Monos_I This 99.7 1E-17 2.2E-22 171.9 13.6 133 741-882 12-152 (163)
136 cd03298 ABC_ThiQ_thiamine_tran 99.7 9.1E-18 2E-22 179.3 13.7 139 747-885 16-202 (211)
137 PRK13632 cbiO cobalt transport 99.7 9.2E-18 2E-22 186.4 14.2 140 741-881 21-211 (271)
138 PRK13643 cbiO cobalt transport 99.7 7.1E-18 1.5E-22 188.8 13.4 149 742-891 19-223 (288)
139 PRK10247 putative ABC transpor 99.7 1.1E-17 2.4E-22 180.6 14.5 140 741-880 19-205 (225)
140 PRK14250 phosphate ABC transpo 99.7 9.8E-18 2.1E-22 183.0 14.1 149 741-890 15-210 (241)
141 TIGR01184 ntrCD nitrate transp 99.7 7E-18 1.5E-22 182.8 12.8 145 746-890 2-193 (230)
142 TIGR03873 F420-0_ABC_ATP propo 99.7 8.4E-18 1.8E-22 185.1 13.7 141 741-882 13-207 (256)
143 PRK09544 znuC high-affinity zi 99.7 1.1E-17 2.4E-22 183.7 14.4 140 741-881 16-190 (251)
144 PRK10575 iron-hydroxamate tran 99.7 9.1E-18 2E-22 185.8 13.8 143 741-884 23-220 (265)
145 PRK11614 livF leucine/isoleuci 99.7 8E-18 1.7E-22 183.0 13.1 141 741-882 17-207 (237)
146 TIGR01978 sufC FeS assembly AT 99.7 1.5E-17 3.3E-22 181.4 15.1 149 741-890 12-223 (243)
147 PRK11124 artP arginine transpo 99.7 1.4E-17 2.9E-22 181.8 14.8 149 741-890 14-219 (242)
148 PRK13651 cobalt transporter AT 99.7 9.3E-18 2E-22 189.2 13.8 147 743-890 21-243 (305)
149 COG0411 LivG ABC-type branched 99.7 3.5E-18 7.5E-23 180.2 9.6 150 740-890 15-228 (250)
150 cd03257 ABC_NikE_OppD_transpor 99.7 1.2E-17 2.6E-22 180.4 14.0 140 743-882 19-216 (228)
151 PRK11022 dppD dipeptide transp 99.7 1.1E-17 2.4E-22 190.2 14.4 148 742-890 20-232 (326)
152 TIGR03005 ectoine_ehuA ectoine 99.7 1E-17 2.2E-22 184.0 13.6 149 741-889 12-224 (252)
153 TIGR01189 ccmA heme ABC export 99.7 1.1E-17 2.4E-22 177.1 13.3 133 741-874 12-188 (198)
154 cd03247 ABCC_cytochrome_bd The 99.7 1.2E-17 2.5E-22 173.9 13.2 125 743-880 16-164 (178)
155 PRK10253 iron-enterobactin tra 99.7 1E-17 2.2E-22 185.4 13.4 141 741-882 19-214 (265)
156 cd03228 ABCC_MRP_Like The MRP 99.7 1.1E-17 2.3E-22 173.1 12.7 120 743-879 16-161 (171)
157 TIGR02769 nickel_nikE nickel i 99.7 1.2E-17 2.5E-22 185.0 13.7 142 741-882 23-221 (265)
158 PRK11231 fecE iron-dicitrate t 99.7 1.3E-17 2.8E-22 183.5 13.9 140 741-881 14-207 (255)
159 cd03254 ABCC_Glucan_exporter_l 99.7 8.4E-18 1.8E-22 181.8 12.3 139 741-881 15-206 (229)
160 cd03229 ABC_Class3 This class 99.7 1.1E-17 2.5E-22 174.0 12.8 135 741-877 12-165 (178)
161 COG4175 ProV ABC-type proline/ 99.7 6.5E-18 1.4E-22 182.4 11.1 148 743-890 42-243 (386)
162 PRK10619 histidine/lysine/argi 99.7 1.5E-17 3.2E-22 183.3 14.2 146 741-887 17-227 (257)
163 PRK13640 cbiO cobalt transport 99.7 1.3E-17 2.7E-22 186.3 13.8 141 742-883 20-214 (282)
164 cd03252 ABCC_Hemolysin The ABC 99.7 1.7E-17 3.6E-22 180.5 14.4 140 741-882 14-206 (237)
165 PRK13543 cytochrome c biogenes 99.7 1.6E-17 3.5E-22 178.0 13.9 136 741-877 23-201 (214)
166 TIGR02982 heterocyst_DevA ABC 99.7 1.8E-17 4E-22 178.3 14.3 139 742-881 18-210 (220)
167 cd03245 ABCC_bacteriocin_expor 99.7 1.1E-17 2.3E-22 179.9 12.5 139 742-882 17-208 (220)
168 PRK13634 cbiO cobalt transport 99.7 2.1E-17 4.5E-22 185.3 15.3 149 742-891 20-225 (290)
169 PRK09984 phosphonate/organopho 99.7 1.4E-17 3.1E-22 183.9 13.4 148 741-889 16-230 (262)
170 PRK13646 cbiO cobalt transport 99.7 2.3E-17 5.1E-22 184.5 15.3 147 742-889 20-223 (286)
171 TIGR00968 3a0106s01 sulfate AB 99.7 1.8E-17 3.9E-22 180.5 13.9 150 741-891 12-210 (237)
172 COG4619 ABC-type uncharacteriz 99.7 8.7E-18 1.9E-22 166.5 10.3 152 739-890 13-212 (223)
173 COG3840 ThiQ ABC-type thiamine 99.7 1.5E-17 3.2E-22 167.0 12.0 141 751-891 25-209 (231)
174 PRK15439 autoinducer 2 ABC tra 99.7 1.9E-17 4.1E-22 199.7 15.4 149 741-890 23-218 (510)
175 PRK15079 oligopeptide ABC tran 99.7 1.6E-17 3.4E-22 189.2 13.8 148 742-890 34-240 (331)
176 cd03223 ABCD_peroxisomal_ALDP 99.7 1.6E-17 3.4E-22 171.1 12.5 129 741-880 13-155 (166)
177 PRK13649 cbiO cobalt transport 99.7 2.2E-17 4.8E-22 184.2 14.7 147 742-889 20-222 (280)
178 TIGR01277 thiQ thiamine ABC tr 99.7 2.3E-17 5E-22 176.6 14.2 143 745-887 14-204 (213)
179 cd03251 ABCC_MsbA MsbA is an e 99.7 1.4E-17 3.1E-22 180.6 12.6 146 743-890 16-214 (234)
180 PRK15093 antimicrobial peptide 99.7 2.4E-17 5.2E-22 188.0 15.0 149 741-890 19-237 (330)
181 COG4598 HisP ABC-type histidin 99.7 1.2E-17 2.6E-22 166.9 10.8 171 726-903 7-240 (256)
182 COG4181 Predicted ABC-type tra 99.7 2.6E-17 5.5E-22 163.6 12.9 151 740-890 21-224 (228)
183 COG4525 TauB ABC-type taurine 99.7 1E-17 2.2E-22 169.7 10.2 147 733-879 8-199 (259)
184 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 2.8E-17 6E-22 178.9 14.6 139 742-882 16-207 (238)
185 PRK10762 D-ribose transporter 99.7 2.7E-17 5.8E-22 198.1 15.9 150 741-891 16-220 (501)
186 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 2.7E-17 5.8E-22 177.6 14.3 141 740-881 33-211 (224)
187 cd03253 ABCC_ATM1_transporter 99.7 2.7E-17 5.9E-22 178.7 14.4 140 741-882 13-205 (236)
188 PRK15112 antimicrobial peptide 99.7 2.4E-17 5.2E-22 182.7 14.0 140 742-882 26-220 (267)
189 PRK03695 vitamin B12-transport 99.7 2.4E-17 5.3E-22 180.6 13.9 140 744-884 11-205 (248)
190 cd03234 ABCG_White The White s 99.7 2.5E-17 5.4E-22 177.9 13.7 146 742-888 20-220 (226)
191 TIGR02770 nickel_nikD nickel i 99.7 2.3E-17 4.9E-22 178.8 13.3 144 745-889 2-203 (230)
192 PRK11701 phnK phosphonate C-P 99.7 3.1E-17 6.6E-22 180.9 14.4 150 741-890 18-230 (258)
193 cd03248 ABCC_TAP TAP, the Tran 99.7 2.4E-17 5.2E-22 178.0 13.3 137 742-880 27-216 (226)
194 PRK11308 dppF dipeptide transp 99.7 2.4E-17 5.3E-22 187.4 13.9 149 742-890 28-233 (327)
195 TIGR02142 modC_ABC molybdenum 99.7 2.6E-17 5.7E-22 189.4 14.3 145 747-891 15-211 (354)
196 PRK14237 phosphate transporter 99.7 5.9E-17 1.3E-21 179.6 16.3 148 741-890 32-240 (267)
197 cd03217 ABC_FeS_Assembly ABC-t 99.7 2.9E-17 6.3E-22 174.2 13.3 140 741-888 12-181 (200)
198 PRK10418 nikD nickel transport 99.7 4.1E-17 8.9E-22 179.5 14.9 150 741-890 15-219 (254)
199 PRK09700 D-allose transporter 99.7 3.6E-17 7.9E-22 197.4 15.8 149 741-890 17-223 (510)
200 cd03232 ABC_PDR_domain2 The pl 99.7 1.6E-17 3.5E-22 175.0 11.1 131 742-881 20-178 (192)
201 PRK14268 phosphate ABC transpo 99.7 4.8E-17 1.1E-21 179.3 15.4 147 741-889 24-230 (258)
202 PRK13549 xylose transporter AT 99.7 3E-17 6.5E-22 197.9 15.0 149 741-890 17-221 (506)
203 PRK11144 modC molybdate transp 99.7 3.3E-17 7.1E-22 188.4 14.4 144 747-890 16-207 (352)
204 PRK13642 cbiO cobalt transport 99.7 2.8E-17 6.1E-22 183.1 13.4 140 742-882 20-210 (277)
205 PRK10419 nikE nickel transport 99.7 4.5E-17 9.7E-22 180.6 15.0 149 741-889 24-229 (268)
206 TIGR00972 3a0107s01c2 phosphat 99.7 4.3E-17 9.4E-22 178.5 14.6 147 741-889 13-220 (247)
207 PRK13645 cbiO cobalt transport 99.7 3.8E-17 8.3E-22 183.1 14.4 146 743-889 25-228 (289)
208 cd03250 ABCC_MRP_domain1 Domai 99.7 3.4E-17 7.4E-22 174.0 13.2 137 743-879 19-194 (204)
209 PRK14242 phosphate transporter 99.7 5.4E-17 1.2E-21 178.3 15.1 146 741-888 18-224 (253)
210 cd03215 ABC_Carb_Monos_II This 99.7 4.5E-17 9.8E-22 170.1 13.4 126 744-881 15-173 (182)
211 PRK09473 oppD oligopeptide tra 99.7 3.7E-17 8E-22 186.2 13.7 148 742-890 29-240 (330)
212 cd03290 ABCC_SUR1_N The SUR do 99.7 3.7E-17 8.1E-22 175.6 13.0 142 738-879 10-208 (218)
213 TIGR02324 CP_lyasePhnL phospho 99.7 4.7E-17 1E-21 175.5 13.8 138 742-880 21-217 (224)
214 PRK14245 phosphate ABC transpo 99.7 9E-17 2E-21 176.3 16.2 148 741-890 15-223 (250)
215 cd03213 ABCG_EPDR ABCG transpo 99.7 2.1E-17 4.5E-22 174.5 10.6 135 742-885 22-185 (194)
216 cd03297 ABC_ModC_molybdenum_tr 99.7 5.5E-17 1.2E-21 173.8 13.8 135 747-882 16-202 (214)
217 cd03300 ABC_PotA_N PotA is an 99.7 7E-17 1.5E-21 175.2 14.8 143 741-884 12-203 (232)
218 PRK13631 cbiO cobalt transport 99.7 6E-17 1.3E-21 183.7 14.8 148 742-890 39-254 (320)
219 TIGR02323 CP_lyasePhnK phospho 99.7 6.7E-17 1.5E-21 177.6 14.5 149 741-889 15-226 (253)
220 cd03244 ABCC_MRP_domain2 Domai 99.7 4.4E-17 9.4E-22 175.3 12.8 138 742-881 17-206 (221)
221 PRK14275 phosphate ABC transpo 99.7 1.1E-16 2.3E-21 179.3 16.2 140 741-882 51-251 (286)
222 PRK13546 teichoic acids export 99.7 3.5E-17 7.7E-22 180.8 12.1 142 740-882 35-213 (264)
223 PRK10938 putative molybdenum t 99.7 4.9E-17 1.1E-21 195.4 14.4 149 741-890 15-213 (490)
224 COG0410 LivF ABC-type branched 99.7 5.9E-17 1.3E-21 169.8 13.0 150 740-890 14-215 (237)
225 PRK14247 phosphate ABC transpo 99.7 9.2E-17 2E-21 176.2 15.3 147 741-889 15-222 (250)
226 PRK10771 thiQ thiamine transpo 99.7 6.3E-17 1.4E-21 175.5 13.7 136 747-882 17-200 (232)
227 PRK13541 cytochrome c biogenes 99.7 6.4E-17 1.4E-21 170.8 13.4 137 742-880 14-190 (195)
228 PRK10982 galactose/methyl gala 99.7 7.1E-17 1.5E-21 194.0 15.5 149 741-890 10-212 (491)
229 PRK13547 hmuV hemin importer A 99.7 5.8E-17 1.3E-21 179.9 13.1 140 741-881 13-224 (272)
230 TIGR03269 met_CoM_red_A2 methy 99.7 8.5E-17 1.8E-21 194.7 15.4 148 741-888 12-245 (520)
231 PRK09580 sufC cysteine desulfu 99.7 1.1E-16 2.3E-21 175.3 14.7 137 741-878 13-210 (248)
232 cd03222 ABC_RNaseL_inhibitor T 99.7 6E-17 1.3E-21 168.1 11.9 121 741-877 12-136 (177)
233 PRK13545 tagH teichoic acids e 99.7 3.7E-17 8E-22 192.1 11.6 148 742-890 37-221 (549)
234 PRK14235 phosphate transporter 99.7 1.4E-16 3.1E-21 176.5 15.7 140 741-882 31-232 (267)
235 PRK11288 araG L-arabinose tran 99.7 9.8E-17 2.1E-21 193.2 15.6 148 741-889 16-217 (501)
236 PRK14273 phosphate ABC transpo 99.7 9.1E-17 2E-21 176.6 14.0 140 741-882 19-219 (254)
237 COG1119 ModF ABC-type molybden 99.7 5.8E-17 1.3E-21 171.0 11.7 137 740-877 42-237 (257)
238 PRK10744 pstB phosphate transp 99.7 1.2E-16 2.5E-21 176.5 14.7 147 741-889 25-232 (260)
239 PRK13549 xylose transporter AT 99.7 1E-16 2.2E-21 193.3 15.2 147 741-888 274-481 (506)
240 cd03299 ABC_ModC_like Archeal 99.7 9.8E-17 2.1E-21 174.4 13.6 144 744-888 14-206 (235)
241 CHL00131 ycf16 sulfate ABC tra 99.7 1.3E-16 2.8E-21 175.2 14.5 137 741-878 19-216 (252)
242 PRK14248 phosphate ABC transpo 99.7 1.4E-16 3E-21 176.7 14.9 147 741-889 33-240 (268)
243 TIGR01257 rim_protein retinal- 99.7 4.2E-17 9.2E-22 216.2 12.5 151 742-893 1952-2151(2272)
244 PRK14269 phosphate ABC transpo 99.7 1.7E-16 3.7E-21 173.7 15.3 146 741-888 14-217 (246)
245 PRK14244 phosphate ABC transpo 99.7 1.2E-16 2.6E-21 175.4 14.1 148 741-890 17-226 (251)
246 PRK14256 phosphate ABC transpo 99.7 1.2E-16 2.6E-21 175.5 14.0 148 741-890 16-225 (252)
247 PRK14274 phosphate ABC transpo 99.7 1.4E-16 3.1E-21 175.7 14.6 148 741-890 24-232 (259)
248 cd03236 ABC_RNaseL_inhibitor_d 99.7 7.2E-17 1.6E-21 177.4 12.1 138 742-880 14-207 (255)
249 TIGR02633 xylG D-xylose ABC tr 99.7 1.1E-16 2.5E-21 192.7 14.7 148 741-889 13-218 (500)
250 cd03289 ABCC_CFTR2 The CFTR su 99.7 8.2E-17 1.8E-21 178.7 12.0 139 741-881 16-205 (275)
251 PRK14251 phosphate ABC transpo 99.7 1.8E-16 3.9E-21 174.0 14.5 148 741-890 16-224 (251)
252 PRK09700 D-allose transporter 99.7 1.6E-16 3.4E-21 192.0 15.4 138 743-881 277-478 (510)
253 PRK14241 phosphate transporter 99.7 2.1E-16 4.5E-21 174.3 14.9 139 741-881 16-216 (258)
254 PRK15439 autoinducer 2 ABC tra 99.7 1.4E-16 2.9E-21 192.4 14.6 137 744-881 278-472 (510)
255 TIGR02633 xylG D-xylose ABC tr 99.7 1.5E-16 3.3E-21 191.6 15.0 148 741-889 272-480 (500)
256 PRK11288 araG L-arabinose tran 99.7 1.7E-16 3.6E-21 191.2 15.1 138 743-881 267-465 (501)
257 PRK14262 phosphate ABC transpo 99.7 2.9E-16 6.2E-21 172.3 15.6 147 741-889 15-222 (250)
258 PRK14267 phosphate ABC transpo 99.7 2E-16 4.4E-21 173.8 14.4 147 741-889 16-225 (253)
259 cd03369 ABCC_NFT1 Domain 2 of 99.7 2E-16 4.3E-21 168.6 13.8 134 742-881 21-192 (207)
260 COG4586 ABC-type uncharacteriz 99.7 4.2E-17 9.2E-22 173.2 8.5 151 743-893 38-238 (325)
261 PRK14239 phosphate transporter 99.7 2.3E-16 5.1E-21 173.1 14.7 147 741-889 17-224 (252)
262 PRK14240 phosphate transporter 99.7 2.4E-16 5.3E-21 172.8 14.8 147 741-889 15-222 (250)
263 TIGR01257 rim_protein retinal- 99.7 9.7E-17 2.1E-21 212.8 13.6 151 741-893 942-1141(2272)
264 PRK14270 phosphate ABC transpo 99.7 1.7E-16 3.7E-21 174.2 13.4 148 741-890 16-224 (251)
265 PRK14246 phosphate ABC transpo 99.7 2.1E-16 4.5E-21 174.2 13.7 144 740-885 21-225 (257)
266 TIGR03771 anch_rpt_ABC anchore 99.7 1.9E-16 4.1E-21 170.8 13.2 130 751-881 6-182 (223)
267 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 1.8E-16 3.9E-21 159.4 12.0 114 742-877 13-131 (144)
268 PRK14259 phosphate ABC transpo 99.7 2.2E-16 4.8E-21 175.1 13.9 138 741-880 25-221 (269)
269 cd03233 ABC_PDR_domain1 The pl 99.7 4.3E-16 9.4E-21 165.5 15.1 145 741-888 19-196 (202)
270 PRK14255 phosphate ABC transpo 99.7 3.5E-16 7.7E-21 171.7 14.7 148 741-890 17-225 (252)
271 COG0444 DppD ABC-type dipeptid 99.7 1.8E-16 3.8E-21 174.2 12.0 139 741-880 17-222 (316)
272 PRK10938 putative molybdenum t 99.7 2E-16 4.4E-21 190.1 13.5 136 741-877 272-466 (490)
273 PRK10762 D-ribose transporter 99.7 2.6E-16 5.7E-21 189.5 14.5 138 743-881 266-464 (501)
274 PRK14265 phosphate ABC transpo 99.7 3.2E-16 6.9E-21 174.4 13.9 139 741-881 32-229 (274)
275 PRK15177 Vi polysaccharide exp 99.7 2.7E-16 5.8E-21 168.5 12.8 136 744-882 2-173 (213)
276 PRK10261 glutathione transport 99.7 2.4E-16 5.3E-21 194.2 14.2 147 742-889 337-541 (623)
277 cd03288 ABCC_SUR2 The SUR doma 99.7 4.4E-16 9.6E-21 171.6 14.8 139 742-882 34-224 (257)
278 PRK15134 microcin C ABC transp 99.7 3.4E-16 7.4E-21 189.8 14.9 148 742-890 22-235 (529)
279 PRK14253 phosphate ABC transpo 99.7 5.3E-16 1.1E-20 170.1 15.0 146 741-888 15-220 (249)
280 PRK10261 glutathione transport 99.7 2.9E-16 6.4E-21 193.5 14.4 148 742-890 29-247 (623)
281 TIGR03269 met_CoM_red_A2 methy 99.7 4.7E-16 1E-20 188.3 15.9 140 742-881 297-497 (520)
282 PRK14272 phosphate ABC transpo 99.7 4.8E-16 1E-20 170.7 14.5 148 741-890 16-225 (252)
283 PRK15134 microcin C ABC transp 99.7 2.4E-16 5.3E-21 191.1 13.3 149 741-890 298-504 (529)
284 cd03291 ABCC_CFTR1 The CFTR su 99.7 4.2E-16 9E-21 173.7 14.1 139 741-880 49-226 (282)
285 PRK10982 galactose/methyl gala 99.7 3.1E-16 6.7E-21 188.5 14.0 140 742-882 261-461 (491)
286 PRK14261 phosphate ABC transpo 99.7 5.8E-16 1.3E-20 170.2 14.8 140 741-882 18-218 (253)
287 PRK14249 phosphate ABC transpo 99.7 5.8E-16 1.3E-20 170.0 14.7 147 741-889 16-223 (251)
288 PRK14271 phosphate ABC transpo 99.7 6.2E-16 1.3E-20 172.2 15.1 154 733-889 26-239 (276)
289 PRK13409 putative ATPase RIL; 99.7 3.1E-16 6.8E-21 191.1 13.8 136 743-878 353-519 (590)
290 cd00267 ABC_ATPase ABC (ATP-bi 99.7 4.1E-16 8.8E-21 158.9 12.1 129 742-879 12-146 (157)
291 PRK14264 phosphate ABC transpo 99.7 9.2E-16 2E-20 173.2 16.1 138 741-880 57-267 (305)
292 PRK14254 phosphate ABC transpo 99.7 4.7E-16 1E-20 173.9 13.6 135 741-877 51-243 (285)
293 PRK14236 phosphate transporter 99.7 5.2E-16 1.1E-20 172.4 13.8 148 741-890 37-245 (272)
294 PRK14238 phosphate transporter 99.7 7E-16 1.5E-20 171.3 14.5 148 741-890 36-244 (271)
295 COG1129 MglA ABC-type sugar tr 99.7 6.7E-16 1.4E-20 179.9 14.8 150 740-890 19-223 (500)
296 PRK14263 phosphate ABC transpo 99.7 6.7E-16 1.5E-20 170.5 14.1 140 740-881 19-217 (261)
297 COG4559 ABC-type hemin transpo 99.7 3.7E-16 8.1E-21 160.7 10.8 150 740-890 12-219 (259)
298 PRK14258 phosphate ABC transpo 99.7 8.2E-16 1.8E-20 169.9 14.3 143 741-884 19-223 (261)
299 COG0396 sufC Cysteine desulfur 99.7 6.2E-16 1.3E-20 161.4 12.1 137 742-879 17-210 (251)
300 PRK14252 phosphate ABC transpo 99.6 1.2E-15 2.6E-20 168.9 15.2 147 741-889 28-237 (265)
301 PRK14260 phosphate ABC transpo 99.6 1.1E-15 2.4E-20 168.6 14.7 135 741-877 19-213 (259)
302 PRK15064 ABC transporter ATP-b 99.6 5.6E-16 1.2E-20 188.0 13.4 143 741-887 13-227 (530)
303 PRK11819 putative ABC transpor 99.6 6.1E-16 1.3E-20 188.5 13.8 137 741-882 19-230 (556)
304 COG4161 ArtP ABC-type arginine 99.6 1.3E-15 2.9E-20 149.8 13.2 152 740-892 13-221 (242)
305 COG4604 CeuD ABC-type enteroch 99.6 2.6E-16 5.7E-21 159.9 8.4 150 740-890 12-214 (252)
306 PRK14257 phosphate ABC transpo 99.6 9E-16 1.9E-20 174.7 13.8 149 741-891 94-303 (329)
307 PRK14266 phosphate ABC transpo 99.6 1.6E-15 3.5E-20 166.4 15.2 136 741-878 15-210 (250)
308 PRK14243 phosphate transporter 99.6 1.4E-15 2.9E-20 168.4 14.5 135 741-877 22-214 (264)
309 PRK10522 multidrug transporter 99.6 1.1E-15 2.3E-20 186.2 15.0 158 733-890 327-527 (547)
310 COG1134 TagH ABC-type polysacc 99.6 3.3E-16 7.1E-21 165.6 8.9 154 740-894 38-229 (249)
311 TIGR01187 potA spermidine/putr 99.6 5.4E-16 1.2E-20 176.5 11.4 136 756-891 1-180 (325)
312 COG1123 ATPase components of v 99.6 7.9E-16 1.7E-20 180.3 12.8 149 742-890 22-233 (539)
313 COG3845 ABC-type uncharacteriz 99.6 1.5E-15 3.3E-20 173.4 14.5 149 741-890 16-218 (501)
314 PLN03211 ABC transporter G-25; 99.6 5.2E-16 1.1E-20 191.4 11.6 152 741-893 80-288 (659)
315 COG2274 SunT ABC-type bacterio 99.6 3.4E-15 7.4E-20 183.5 17.8 156 734-891 477-686 (709)
316 PRK10636 putative ABC transpor 99.6 1.1E-15 2.5E-20 188.5 13.7 138 740-881 12-215 (638)
317 PRK13409 putative ATPase RIL; 99.6 9.6E-16 2.1E-20 186.9 12.9 140 737-878 82-276 (590)
318 COG4133 CcmA ABC-type transpor 99.6 1.8E-15 3.8E-20 153.5 12.4 133 740-873 13-190 (209)
319 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 1.7E-15 3.8E-20 184.4 13.6 137 737-878 13-223 (552)
320 TIGR01842 type_I_sec_PrtD type 99.6 1.8E-15 3.9E-20 184.1 13.4 155 733-888 321-529 (544)
321 PRK15064 ABC transporter ATP-b 99.6 1.8E-15 3.8E-20 183.6 12.7 134 741-878 331-500 (530)
322 PRK10535 macrolide transporter 99.6 3.8E-15 8.2E-20 184.4 15.7 150 742-892 21-223 (648)
323 PRK13657 cyclic beta-1,2-gluca 99.6 2.1E-15 4.5E-20 185.3 13.2 156 733-890 339-547 (588)
324 PRK10636 putative ABC transpor 99.6 1.8E-15 3.9E-20 186.8 12.7 134 740-877 323-491 (638)
325 cd03270 ABC_UvrA_I The excisio 99.6 3.7E-15 8.1E-20 161.1 13.1 83 798-881 121-207 (226)
326 PRK10790 putative multidrug tr 99.6 1.5E-14 3.2E-19 178.0 19.9 155 734-890 346-552 (592)
327 TIGR03797 NHPM_micro_ABC2 NHPM 99.6 1.7E-14 3.7E-19 180.3 20.4 155 733-891 456-663 (686)
328 PRK11174 cysteine/glutathione 99.6 3.5E-15 7.6E-20 183.3 13.9 146 740-888 361-559 (588)
329 KOG0057 Mitochondrial Fe/S clu 99.6 2.9E-14 6.4E-19 164.2 20.3 163 726-893 352-566 (591)
330 PLN03073 ABC transporter F fam 99.6 3.5E-15 7.6E-20 185.2 13.6 138 736-877 516-688 (718)
331 PRK11176 lipid transporter ATP 99.6 1.9E-14 4.2E-19 176.6 19.9 154 734-889 347-555 (582)
332 TIGR03796 NHPM_micro_ABC1 NHPM 99.6 2.8E-15 6.1E-20 188.1 12.6 155 733-891 482-690 (710)
333 TIGR01192 chvA glucan exporter 99.6 3.5E-15 7.7E-20 182.9 13.1 153 734-888 340-545 (585)
334 COG4988 CydD ABC-type transpor 99.6 1.9E-14 4.1E-19 168.2 18.1 158 733-892 325-534 (559)
335 cd03278 ABC_SMC_barmotin Barmo 99.6 5.7E-15 1.2E-19 156.3 12.6 124 751-880 23-183 (197)
336 TIGR01194 cyc_pep_trnsptr cycl 99.6 6.5E-15 1.4E-19 179.6 14.7 148 742-889 355-547 (555)
337 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 4.1E-15 8.9E-20 181.2 12.4 133 741-877 334-504 (552)
338 PRK11160 cysteine/glutathione 99.6 4.2E-15 9E-20 182.0 12.5 155 733-889 343-550 (574)
339 TIGR02203 MsbA_lipidA lipid A 99.6 5E-15 1.1E-19 181.4 13.0 154 734-889 336-544 (571)
340 PRK11819 putative ABC transpor 99.6 4.6E-15 1E-19 180.9 12.6 133 741-877 336-506 (556)
341 PRK11147 ABC transporter ATPas 99.6 6.3E-15 1.4E-19 182.2 13.9 142 740-887 14-228 (635)
342 COG4608 AppF ABC-type oligopep 99.6 1.1E-14 2.3E-19 157.1 13.7 209 742-968 26-249 (268)
343 TIGR03375 type_I_sec_LssB type 99.6 5.6E-15 1.2E-19 184.9 13.4 154 733-888 468-675 (694)
344 KOG0059 Lipid exporter ABCA1 a 99.6 2.8E-15 6.1E-20 190.7 10.0 156 744-900 580-786 (885)
345 TIGR00954 3a01203 Peroxysomal 99.6 7.2E-15 1.6E-19 182.1 13.1 141 736-880 459-646 (659)
346 COG1123 ATPase components of v 99.6 1E-14 2.2E-19 171.1 13.5 139 741-879 303-496 (539)
347 PRK11147 ABC transporter ATPas 99.6 6.9E-15 1.5E-19 181.9 12.8 134 740-877 330-501 (635)
348 COG0488 Uup ATPase components 99.6 7E-15 1.5E-19 175.4 12.3 134 740-878 14-215 (530)
349 TIGR01193 bacteriocin_ABC ABC- 99.6 7.2E-15 1.6E-19 184.3 12.9 155 733-890 478-686 (708)
350 TIGR00958 3a01208 Conjugate Tr 99.6 7.6E-15 1.6E-19 183.8 12.6 155 733-891 483-692 (711)
351 TIGR00955 3a01204 The Eye Pigm 99.6 7.4E-15 1.6E-19 180.9 12.2 153 740-893 36-248 (617)
352 COG0488 Uup ATPase components 99.6 9.2E-14 2E-18 165.9 21.1 142 733-878 326-501 (530)
353 TIGR01846 type_I_sec_HlyB type 99.6 5.3E-14 1.2E-18 176.1 19.9 155 734-890 461-669 (694)
354 COG4987 CydC ABC-type transpor 99.6 6.7E-15 1.5E-19 169.4 10.7 162 732-895 340-555 (573)
355 TIGR02204 MsbA_rel ABC transpo 99.6 1E-14 2.3E-19 178.8 13.1 148 742-891 353-553 (576)
356 COG4674 Uncharacterized ABC-ty 99.6 4.9E-15 1.1E-19 150.5 7.9 137 740-878 16-211 (249)
357 PRK10789 putative multidrug tr 99.6 1.2E-14 2.5E-19 177.9 12.6 148 736-885 321-522 (569)
358 TIGR02857 CydD thiol reductant 99.6 1.3E-14 2.9E-19 176.0 12.6 146 733-880 325-524 (529)
359 PLN03140 ABC transporter G fam 99.6 2E-14 4.3E-19 189.9 14.8 145 741-886 892-1094(1470)
360 COG4148 ModC ABC-type molybdat 99.6 1.1E-14 2.3E-19 155.3 10.0 141 752-893 25-210 (352)
361 COG4136 ABC-type uncharacteriz 99.6 1.8E-14 4E-19 140.5 10.5 137 740-877 13-199 (213)
362 COG4107 PhnK ABC-type phosphon 99.5 3.6E-14 7.7E-19 141.5 12.6 141 740-880 17-219 (258)
363 PLN03073 ABC transporter F fam 99.5 2.3E-14 4.9E-19 178.1 13.5 151 733-888 182-417 (718)
364 TIGR02868 CydC thiol reductant 99.5 2.1E-14 4.6E-19 174.3 12.8 140 732-873 338-529 (529)
365 COG1101 PhnK ABC-type uncharac 99.5 1.2E-14 2.6E-19 149.9 8.7 138 740-877 17-213 (263)
366 TIGR00956 3a01205 Pleiotropic 99.5 2.9E-14 6.4E-19 188.8 14.7 147 741-888 775-979 (1394)
367 COG4618 ArpD ABC-type protease 99.5 2.4E-13 5.3E-18 155.3 18.4 143 739-882 346-541 (580)
368 cd03274 ABC_SMC4_euk Eukaryoti 99.5 3E-14 6.4E-19 152.6 10.0 138 740-881 15-198 (212)
369 COG0249 MutS Mismatch repair A 99.5 5.1E-14 1.1E-18 175.3 12.8 310 347-700 208-551 (843)
370 cd03272 ABC_SMC3_euk Eukaryoti 99.5 1.6E-13 3.4E-18 149.9 13.9 72 809-882 154-230 (243)
371 COG1132 MdlB ABC-type multidru 99.5 8.7E-14 1.9E-18 170.3 12.9 156 733-891 333-542 (567)
372 PTZ00243 ABC transporter; Prov 99.5 1.2E-13 2.5E-18 184.7 14.3 147 741-888 672-857 (1560)
373 KOG0055 Multidrug/pheromone ex 99.5 8.9E-14 1.9E-18 174.0 11.3 159 733-894 355-569 (1228)
374 cd03279 ABC_sbcCD SbcCD and ot 99.5 1E-13 2.2E-18 148.6 10.2 128 751-879 28-199 (213)
375 PTZ00265 multidrug resistance 99.5 1.3E-13 2.9E-18 182.9 13.4 77 810-887 576-654 (1466)
376 KOG0927 Predicted transporter 99.5 4.8E-13 1E-17 153.7 15.9 150 733-887 394-581 (614)
377 cd03271 ABC_UvrA_II The excisi 99.5 4.3E-13 9.3E-18 147.4 14.9 84 797-881 152-240 (261)
378 TIGR01271 CFTR_protein cystic 99.5 2E-13 4.3E-18 182.3 13.5 149 742-891 439-626 (1490)
379 TIGR00956 3a01205 Pleiotropic 99.4 3E-13 6.5E-18 179.3 13.4 150 741-891 73-290 (1394)
380 KOG0061 Transporter, ABC super 99.4 3.5E-13 7.6E-18 164.9 12.8 150 741-891 42-250 (613)
381 PTZ00265 multidrug resistance 99.4 3.1E-13 6.7E-18 179.4 12.7 155 732-887 1169-1433(1466)
382 PLN03140 ABC transporter G fam 99.4 2.6E-13 5.7E-18 179.4 11.4 151 741-892 177-418 (1470)
383 PLN03232 ABC transporter C fam 99.4 4.3E-13 9.4E-18 179.4 11.8 157 733-891 1239-1448(1495)
384 KOG0062 ATPase component of AB 99.4 3.3E-13 7.2E-18 154.3 8.8 134 740-877 91-259 (582)
385 PLN03130 ABC transporter C fam 99.4 7.8E-13 1.7E-17 177.2 12.9 159 733-893 1242-1453(1622)
386 cd03240 ABC_Rad50 The catalyti 99.4 4.5E-13 9.8E-18 142.7 8.5 134 746-880 16-190 (204)
387 cd03276 ABC_SMC6_euk Eukaryoti 99.4 1.8E-12 4E-17 137.3 13.0 133 747-879 16-182 (198)
388 PTZ00243 ABC transporter; Prov 99.4 8E-13 1.7E-17 176.9 12.6 157 733-891 1313-1523(1560)
389 PLN03232 ABC transporter C fam 99.4 4.9E-12 1.1E-16 169.4 20.0 149 741-890 629-817 (1495)
390 TIGR00957 MRP_assoc_pro multi 99.4 7.9E-13 1.7E-17 177.2 12.4 149 742-890 651-839 (1522)
391 cd03273 ABC_SMC2_euk Eukaryoti 99.4 1.6E-12 3.4E-17 143.0 12.5 74 808-883 161-239 (251)
392 TIGR01070 mutS1 DNA mismatch r 99.4 1.1E-12 2.4E-17 165.1 12.6 197 365-598 215-421 (840)
393 cd03275 ABC_SMC1_euk Eukaryoti 99.4 1.8E-12 3.9E-17 142.2 12.7 129 751-880 22-226 (247)
394 TIGR01271 CFTR_protein cystic 99.4 1.1E-12 2.4E-17 175.3 13.1 151 733-885 1222-1424(1490)
395 TIGR00957 MRP_assoc_pro multi 99.4 1E-12 2.2E-17 176.1 12.3 156 733-890 1289-1497(1522)
396 PLN03130 ABC transporter C fam 99.4 2.2E-12 4.7E-17 173.0 14.0 149 741-890 629-817 (1622)
397 COG4138 BtuD ABC-type cobalami 99.4 4.1E-13 8.9E-18 134.2 5.1 125 751-876 25-195 (248)
398 COG4172 ABC-type uncharacteriz 99.4 3.6E-12 7.9E-17 141.9 12.6 139 740-878 21-223 (534)
399 COG4778 PhnL ABC-type phosphon 99.4 9.8E-13 2.1E-17 131.0 7.3 135 742-877 24-216 (235)
400 KOG0058 Peptide exporter, ABC 99.4 2E-12 4.4E-17 154.1 11.3 150 733-884 470-674 (716)
401 PF00005 ABC_tran: ABC transpo 99.3 1.7E-12 3.7E-17 128.7 7.8 97 745-841 1-137 (137)
402 PRK05399 DNA mismatch repair p 99.3 2.5E-12 5.5E-17 162.7 11.3 190 372-598 239-435 (854)
403 KOG0056 Heavy metal exporter H 99.3 3.5E-12 7.6E-17 144.0 10.6 145 733-881 542-741 (790)
404 COG4172 ABC-type uncharacteriz 99.3 1.1E-11 2.4E-16 138.1 12.4 136 742-878 300-492 (534)
405 KOG0066 eIF2-interacting prote 99.3 4.5E-12 9.9E-17 141.1 8.8 145 729-877 587-765 (807)
406 cd03239 ABC_SMC_head The struc 99.3 7.6E-12 1.7E-16 130.4 8.9 124 753-881 24-166 (178)
407 KOG0055 Multidrug/pheromone ex 99.3 1.8E-11 3.8E-16 153.8 11.9 159 733-894 992-1206(1228)
408 cd03277 ABC_SMC5_euk Eukaryoti 99.2 2.6E-11 5.6E-16 130.0 11.1 126 748-875 19-194 (213)
409 KOG0927 Predicted transporter 99.2 3E-11 6.4E-16 139.2 10.6 134 740-877 86-283 (614)
410 COG4615 PvdE ABC-type sideroph 99.2 1.7E-10 3.8E-15 128.2 15.6 160 732-891 326-527 (546)
411 COG4178 ABC-type uncharacteriz 99.2 2.8E-10 6.2E-15 135.7 17.1 152 723-879 390-580 (604)
412 TIGR00630 uvra excinuclease AB 99.2 5.4E-11 1.2E-15 150.3 11.0 84 798-882 812-900 (924)
413 COG1245 Predicted ATPase, RNas 99.2 7.2E-11 1.6E-15 133.4 9.6 129 751-879 367-522 (591)
414 PRK00349 uvrA excinuclease ABC 99.2 1.4E-10 2.9E-15 147.0 12.6 84 798-882 814-902 (943)
415 COG1245 Predicted ATPase, RNas 99.2 8.6E-11 1.9E-15 132.8 9.6 147 742-889 88-289 (591)
416 PRK00635 excinuclease ABC subu 99.1 1.3E-10 2.9E-15 152.9 12.6 88 797-885 792-884 (1809)
417 KOG0065 Pleiotropic drug resis 99.1 2.8E-11 6.1E-16 151.9 5.8 134 740-874 802-991 (1391)
418 COG2401 ABC-type ATPase fused 99.1 4.4E-10 9.5E-15 125.7 11.2 138 741-878 395-573 (593)
419 COG4167 SapF ABC-type antimicr 99.0 1.2E-09 2.5E-14 110.4 11.5 135 743-877 27-214 (267)
420 KOG2355 Predicted ABC-type tra 99.0 1.6E-09 3.4E-14 111.4 11.6 161 725-888 13-224 (291)
421 PF05192 MutS_III: MutS domain 99.0 2.3E-09 4.9E-14 113.4 12.5 96 404-517 1-102 (204)
422 KOG0054 Multidrug resistance-a 99.0 5.9E-09 1.3E-13 134.4 17.7 165 725-891 518-721 (1381)
423 KOG0219 Mismatch repair ATPase 99.0 5E-10 1.1E-14 133.3 6.6 361 371-787 288-690 (902)
424 COG3910 Predicted ATPase [Gene 99.0 3.2E-09 7E-14 108.0 10.7 123 752-878 38-193 (233)
425 cd03241 ABC_RecN RecN ATPase i 98.9 1.5E-09 3.2E-14 121.2 8.3 67 813-881 170-241 (276)
426 KOG0060 Long-chain acyl-CoA tr 98.9 5.7E-08 1.2E-12 113.4 20.5 134 741-878 447-632 (659)
427 KOG0064 Peroxisomal long-chain 98.9 2.1E-08 4.7E-13 115.2 16.4 136 739-878 492-674 (728)
428 COG5265 ATM1 ABC-type transpor 98.9 2.8E-09 6.1E-14 120.1 8.7 154 733-891 267-476 (497)
429 KOG0054 Multidrug resistance-a 98.8 1.3E-08 2.8E-13 131.4 12.3 137 740-878 1151-1339(1381)
430 KOG0066 eIF2-interacting prote 98.8 6E-09 1.3E-13 116.7 5.9 135 740-878 275-474 (807)
431 COG4170 SapD ABC-type antimicr 98.8 4.8E-08 1E-12 100.8 11.4 137 740-877 18-223 (330)
432 KOG0062 ATPase component of AB 98.7 2E-08 4.3E-13 115.8 8.6 138 737-878 371-544 (582)
433 COG1129 MglA ABC-type sugar tr 98.7 7.8E-08 1.7E-12 113.0 13.5 146 744-890 274-479 (500)
434 PF02463 SMC_N: RecF/RecN/SMC 98.7 1.3E-07 2.9E-12 101.6 13.0 67 813-881 136-207 (220)
435 COG0178 UvrA Excinuclease ATPa 98.7 5.3E-08 1.1E-12 117.4 10.6 75 808-883 817-895 (935)
436 PRK00635 excinuclease ABC subu 98.6 8.9E-08 1.9E-12 126.9 10.4 77 807-884 1693-1773(1809)
437 TIGR02858 spore_III_AA stage I 98.6 1.7E-07 3.7E-12 103.8 9.7 115 752-878 112-234 (270)
438 PRK08533 flagellar accessory p 98.5 5.3E-07 1.1E-11 98.0 11.1 121 751-874 24-163 (230)
439 cd03242 ABC_RecF RecF is a rec 98.5 3.1E-07 6.8E-12 102.2 9.1 58 813-875 183-250 (270)
440 cd01124 KaiC KaiC is a circadi 98.4 1.7E-06 3.6E-11 90.3 10.4 121 753-875 1-142 (187)
441 cd01120 RecA-like_NTPases RecA 98.4 2.6E-06 5.6E-11 85.9 11.3 123 753-875 1-139 (165)
442 PF05192 MutS_III: MutS domain 98.4 1E-06 2.2E-11 93.2 8.4 136 380-533 8-163 (204)
443 PF13304 AAA_21: AAA domain; P 98.3 1E-06 2.2E-11 94.6 8.1 63 813-876 236-302 (303)
444 KOG0063 RNAse L inhibitor, ABC 98.3 9.1E-07 2E-11 100.0 7.6 128 751-878 367-522 (592)
445 TIGR00630 uvra excinuclease AB 98.3 1.9E-06 4.2E-11 109.6 10.5 87 798-885 471-561 (924)
446 PRK00349 uvrA excinuclease ABC 98.3 1.4E-06 3.1E-11 111.0 9.0 88 797-885 472-563 (943)
447 KOG0218 Mismatch repair MSH3 [ 98.3 4.5E-05 9.8E-10 90.4 19.4 96 371-469 458-577 (1070)
448 PRK13695 putative NTPase; Prov 98.2 3.5E-06 7.6E-11 87.4 7.9 51 827-880 93-143 (174)
449 smart00382 AAA ATPases associa 98.1 2.4E-05 5.2E-10 75.8 11.4 116 752-872 3-125 (148)
450 PRK06067 flagellar accessory p 98.1 1.4E-05 3E-10 87.1 10.1 123 751-875 25-167 (234)
451 cd01131 PilT Pilus retraction 97.9 3.1E-05 6.6E-10 82.3 8.4 111 753-878 3-114 (198)
452 PRK07721 fliI flagellum-specif 97.9 6.7E-05 1.5E-09 88.6 11.2 145 741-892 145-334 (438)
453 KOG0065 Pleiotropic drug resis 97.8 2.1E-05 4.5E-10 100.3 6.8 141 742-882 128-332 (1391)
454 COG3845 ABC-type uncharacteriz 97.8 0.0001 2.2E-09 85.9 11.7 148 740-888 269-479 (501)
455 TIGR00634 recN DNA repair prot 97.8 0.0001 2.2E-09 90.7 11.7 116 812-937 439-562 (563)
456 smart00533 MUTSd DNA-binding d 97.8 2.8E-05 6.1E-10 87.9 6.3 83 417-517 2-84 (308)
457 PRK10869 recombination and rep 97.6 0.00031 6.6E-09 86.0 12.2 115 813-937 430-552 (553)
458 KOG0063 RNAse L inhibitor, ABC 97.6 5.6E-05 1.2E-09 85.9 5.3 130 751-881 100-281 (592)
459 cd01125 repA Hexameric Replica 97.6 0.00042 9E-09 75.8 12.0 122 751-873 1-159 (239)
460 TIGR02788 VirB11 P-type DNA tr 97.6 6.1E-05 1.3E-09 85.6 5.5 114 751-878 144-258 (308)
461 cd00009 AAA The AAA+ (ATPases 97.6 0.00026 5.7E-09 69.2 9.2 107 752-875 20-132 (151)
462 PRK06793 fliI flagellum-specif 97.6 0.00021 4.6E-09 83.9 9.3 136 741-880 143-293 (432)
463 cd00820 PEPCK_HprK Phosphoenol 97.5 8.1E-05 1.8E-09 70.9 4.1 31 742-772 2-36 (107)
464 PTZ00132 GTP-binding nuclear p 97.5 0.00022 4.8E-09 76.4 8.0 36 825-861 165-205 (215)
465 PRK14721 flhF flagellar biosyn 97.5 0.00089 1.9E-08 78.7 13.3 88 751-847 191-284 (420)
466 PRK04296 thymidine kinase; Pro 97.5 0.0005 1.1E-08 72.7 10.0 114 751-874 2-117 (190)
467 TIGR00618 sbcc exonuclease Sbc 97.5 0.00019 4.2E-09 94.4 8.5 73 806-879 943-1026(1042)
468 PRK09183 transposase/IS protei 97.5 0.00037 8E-09 77.3 9.0 101 751-872 102-205 (259)
469 TIGR01420 pilT_fam pilus retra 97.5 0.00032 7E-09 80.9 8.7 111 751-876 122-233 (343)
470 cd02023 UMPK Uridine monophosp 97.4 0.00011 2.3E-09 78.0 3.7 23 753-775 1-23 (198)
471 TIGR00606 rad50 rad50. This fa 97.4 0.00056 1.2E-08 92.0 10.7 74 805-878 1191-1275(1311)
472 PRK13830 conjugal transfer pro 97.3 0.0035 7.7E-08 80.3 16.8 49 828-877 650-699 (818)
473 cd01130 VirB11-like_ATPase Typ 97.3 0.00021 4.5E-09 75.2 4.9 26 751-776 25-50 (186)
474 PRK03918 chromosome segregatio 97.3 0.00039 8.4E-09 90.2 8.3 72 809-881 784-862 (880)
475 PF13555 AAA_29: P-loop contai 97.3 0.0002 4.4E-09 61.2 3.7 25 751-775 23-47 (62)
476 PRK10246 exonuclease subunit S 97.3 0.00046 9.9E-09 90.7 8.0 70 808-878 944-1022(1047)
477 PF05188 MutS_II: MutS domain 97.2 0.00031 6.8E-09 69.4 4.8 53 250-302 2-56 (137)
478 TIGR03881 KaiC_arch_4 KaiC dom 97.2 0.0035 7.7E-08 67.9 13.3 123 751-874 20-167 (229)
479 PRK06893 DNA replication initi 97.2 0.0011 2.4E-08 72.1 9.3 93 752-873 40-134 (229)
480 PRK11889 flhF flagellar biosyn 97.2 0.0045 9.7E-08 71.6 14.4 89 752-844 242-334 (436)
481 PRK01156 chromosome segregatio 97.2 0.0007 1.5E-08 88.0 9.1 74 809-882 797-879 (895)
482 PHA02562 46 endonuclease subun 97.2 0.00053 1.1E-08 84.4 7.6 69 810-881 465-545 (562)
483 cd01121 Sms Sms (bacterial rad 97.1 0.0031 6.6E-08 73.5 12.2 117 751-872 82-209 (372)
484 TIGR03015 pepcterm_ATPase puta 97.1 0.0031 6.7E-08 69.9 11.1 122 752-876 44-168 (269)
485 PRK14722 flhF flagellar biosyn 97.1 0.0014 2.9E-08 76.1 8.3 85 751-842 137-227 (374)
486 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0036 7.7E-08 68.0 11.2 126 748-873 16-170 (235)
487 PRK06921 hypothetical protein; 97.1 0.0033 7.1E-08 70.0 11.0 99 753-872 119-224 (266)
488 TIGR00416 sms DNA repair prote 97.1 0.0031 6.8E-08 75.4 11.5 120 751-874 94-223 (454)
489 PF00004 AAA: ATPase family as 97.0 0.0011 2.4E-08 64.5 6.2 101 754-876 1-115 (132)
490 PRK06995 flhF flagellar biosyn 97.0 0.0015 3.3E-08 77.9 8.2 85 751-842 256-346 (484)
491 PRK06731 flhF flagellar biosyn 97.0 0.014 3E-07 65.0 15.3 96 751-847 75-172 (270)
492 PRK12723 flagellar biosynthesi 97.0 0.0097 2.1E-07 69.6 14.5 86 751-843 174-267 (388)
493 PRK13898 type IV secretion sys 97.0 0.0059 1.3E-07 78.3 13.9 49 828-877 640-689 (800)
494 PRK14723 flhF flagellar biosyn 97.0 0.0024 5.3E-08 79.6 9.9 89 751-846 185-280 (767)
495 PRK07952 DNA replication prote 97.0 0.0032 6.9E-08 69.1 9.6 103 753-872 101-204 (244)
496 PF13401 AAA_22: AAA domain; P 97.0 0.0015 3.3E-08 63.8 6.4 111 752-872 5-125 (131)
497 cd01128 rho_factor Transcripti 97.0 0.0015 3.3E-08 71.9 7.0 54 819-877 143-198 (249)
498 PRK14088 dnaA chromosomal repl 97.0 0.0021 4.6E-08 76.6 8.8 103 754-875 133-240 (440)
499 PRK06526 transposase; Provisio 96.9 0.0038 8.3E-08 69.0 10.1 102 751-872 98-200 (254)
500 PRK12377 putative replication 96.9 0.0036 7.8E-08 68.9 9.8 104 752-872 102-205 (248)
No 1
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.7e-112 Score=1039.43 Aligned_cols=733 Identities=24% Similarity=0.327 Sum_probs=620.9
Q ss_pred chHHHHHHHHhcCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCCCCCCCCccccccCcccHHHHHHHHHHCCceEEEE
Q 001570 126 TLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIV 205 (1051)
Q Consensus 126 ~~~~~~~~~K~~~p~~vll~r~Gdfye~~~~DA~~~~~~l~l~~~~~~~~~~~~~~g~P~~~~~~~l~~L~~~G~~vai~ 205 (1051)
.|++||+++|++|||++||||||||||+|++||+.+|++|+|++|+ + +.+||||||+|+++.|+.+||++|||||||
T Consensus 8 P~m~qy~~ik~~~~d~llffr~GdfYelf~~DA~~~s~~l~itlT~--r-~~~pm~gvP~h~~~~yl~~li~~g~kVAic 84 (843)
T COG0249 8 PMMQQYLEIKAQYPDTLLFFRMGDFYELFFEDAKIAARLLDITLTK--R-GNIPMAGVPYHALDYYLAKLIELGYKVAIC 84 (843)
T ss_pred cHHHHHHHHHHhCCccEEEEecccchhhhHHHHHHHHHhhCceeec--C-CCCcCCCCccccHHHHHHHHHhCCCeEEEE
Confidence 5999999999999999999999999999999999999999999998 3 339999999999999999999999999999
Q ss_pred eccCCccccCCcceEeeeeeecCCCccccccccCCCCCCCCCCcc-----EEEEEcCCceEEEEEeccccceeeeecCCC
Q 001570 206 EEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMP-----VIGVSRSAKGYCIISILETMKTYSLEDGLT 280 (1051)
Q Consensus 206 eq~e~p~~ak~~v~R~v~~vvTPGT~~~~~~l~~~~~~~~~~a~~-----~~gi~~~~~~~~~~s~~~~~~~~~v~~~~t 280 (1051)
||+++|+.+|++|+|.|+||+||||.+++.++.+..+ ||++++. .+|+ +|+|+|||+|. +.++.
T Consensus 85 eQ~e~~~~~k~~v~R~v~rv~TpGt~~d~~~l~~~~~-n~l~a~~~~~~~~~gl-----a~~dlstGef~----~~~~~- 153 (843)
T COG0249 85 EQLEDPAEAKGVVERKVVRVVTPGTLTDEALLSDREN-NYLAALAIDRDGKVGL-----AFIDLSTGEFF----VSEFE- 153 (843)
T ss_pred EcccChhhhcCcceeEEEEEECCCeeecccccccccc-ceEEEEEecCCCEEEE-----EEEEcccCeEE----EEEee-
Confidence 9999999999999999999999999999998877777 7876654 4666 77777777766 88887
Q ss_pred HHHHHHHHHcCCcceEEEcCCcccCCCCCccccccCCCCccccccccccccc-cCCchHHHHHHH---Hh--hhcCCCCc
Q 001570 281 EDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEW-FEGDPVIELLLK---VK--ELYGLENE 354 (1051)
Q Consensus 281 ~~~l~~~L~~~~p~Eill~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-f~~~~~~~ll~~---v~--~~~gl~~~ 354 (1051)
.+.+.++|.+++|.||+++.++.+... .+ . .....+++...| |+.+.+...+.. +. +++|+...
T Consensus 154 ~~~l~~~l~r~~p~Eil~~~~~~~~~~-----~~--~---~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~l~~~~~~~~ 223 (843)
T COG0249 154 REKLLSELKRLQPKELLLSESLLSSTL-----AE--I---QKGLFVVRLPASFFDEDDAEEILSEYFGVRDLDGFGLIST 223 (843)
T ss_pred HHHHHHHHHhCCCcEEEeccccCchhh-----hh--h---hhceeeeecchhhcCccHHHHHHHHHhCcccccccccccc
Confidence 888999999999999999988642210 00 0 001134556677 665555444442 22 33555442
Q ss_pred cc-c------------cccc-ccCCccccc------eeecHHhhh--ccCCCC-C---CCccceEecCCCccCCCHHHHH
Q 001570 355 VT-F------------RNVT-VSYENRPRP------LHLGTATQI--GAIPTE-G---IPCLLKVLLPSNCSGLPILYVR 408 (1051)
Q Consensus 355 ~~-~------------~~~~-~~~~~~~~~------LyLd~~Tq~--ell~~~-~---~~sLl~v~l~~t~t~mg~r~LR 408 (1051)
+. + .+.. .++...+.. |.||.+|++ |++++. | .+||+++ +|.|.|+||.|.||
T Consensus 224 ~~~~~a~~~ll~Y~~~t~~~~l~~~~~~~~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~gSL~~~-ld~t~T~mG~RlL~ 302 (843)
T COG0249 224 PLALSAAGALLSYLKDTQKTFLPHIQIIQRYDLEDYMVLDAATRRNLELFSNLRGNGKKGSLFWL-LDRTVTPMGSRLLK 302 (843)
T ss_pred hHHHHHHHHHHHHHHHhhhccccccccceeeccCcEEEEcHHHHhcccccccCCCCCCCCcHHHH-hccCCCchhHHHHH
Confidence 21 1 1111 012222222 899999999 778872 2 3499999 99999999999999
Q ss_pred HhhhcCCcccHHHHHHHHHhHhhhh-------------hcCCCcHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhhcChH
Q 001570 409 DLLLNPPAYEIASTIQAICKLMSKV-------------TCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSE 475 (1051)
Q Consensus 409 ~llL~P~~~sl~~~I~~r~t~mg~~-------------l~~i~dlerL~~~L~~p~a~~~dl~~I~~rL~aV~~l~~~~~ 475 (1051)
+|+..|+. +.. .|+.|+++|+.| |..+||++||.+||..++++++|+..+++.+..+ |+
T Consensus 303 ~wl~~PL~-~~~-~I~~Rld~Ve~l~~~~~l~~~L~~~L~~v~DleRl~~Rl~~~~~~~rDl~~l~~~l~~~------~~ 374 (843)
T COG0249 303 RWLLQPLL-DKE-EIEERLDAVEELKDNPELREKLREMLKKVPDLERLLSRLSLGRASPRDLLRLRDSLEKI------PE 374 (843)
T ss_pred HHhhCccc-CHH-HHHHHHHHHHHHHhhhHHHHHHHHHHhcCcCHHHHHHHHHcCCCChhhHHHHHHHHHHH------HH
Confidence 99999999 888 999999999987 8889999999999999999999999999999999 99
Q ss_pred HHHHHHhccCchhhcccchhhHHHhhhHhHHHHHHHHHhhhccCCchhhhccCCCCChhHHhhcchhhhhhhhhcccchh
Q 001570 476 LNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPE 555 (1051)
Q Consensus 476 l~~~L~~~l~~~~~~~g~~~dlerl~~~~~~~~~~i~~~i~l~~e~p~~~~~~~~I~~~f~~~lds~~~g~V~~~~~~e~ 555 (1051)
+...+.....+.. -.....+++ -+..+.+....+...+. ++||..+++ ++|++||+.++|
T Consensus 375 i~~~l~~~~~~~~-l~~~~~~i~-~~~~~~e~~~ll~~~i~--~~~~~~~~~-~ii~~g~~~eLd--------------- 434 (843)
T COG0249 375 IFKLLSSLKSESD-LLLLLEDIE-SLDYLAELLELLETAIN--EDPPLAVRD-GIIKEGYNIELD--------------- 434 (843)
T ss_pred HHHHHhccccchh-hhHHhhhhh-ccccHHHHHHHHHHHhh--hcchhhcch-hHHhcchhHHHH---------------
Confidence 9998886653310 000111222 12224467777888888 899999999 999999999998
Q ss_pred HHHHHHHHHHHHHhhccCch-hHHhhhhccccCCCCCchhhhhhhcccceeecccccccccccCCCCccccccccccccc
Q 001570 556 IAEVEMAAEALSLAVTEDFL-PIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDS 634 (1051)
Q Consensus 556 l~elr~l~~~L~~aI~ed~l-pi~~re~~~ir~tgg~~~eI~y~~~~~~~~l~Gy~ieV~v~~~~~~~~~I~~l~~~~~~ 634 (1051)
+++.+.+. .++|+ .++.+++. ++|+.+++++|++++ |||++++ ......+|. .|.+
T Consensus 435 --~lr~~~~~-----~~~~i~~le~~~r~---~~gi~slki~~n~v~------Gy~ievt----~~~~~~~p~---~~ir 491 (843)
T COG0249 435 --ELRDLLNN-----AKEWIAKLELEERE---RTGIKSLKIKYNKVY------GYYIEVT----KSNAKLVPD---DYIR 491 (843)
T ss_pred --HHHHHHHH-----HHHHHHHHHHHHHH---hcCCchhhhhhhccc------eeEEEec----hhccccCch---HHHH
Confidence 88888887 66776 77777777 889999999999999 9999993 333334443 3445
Q ss_pred cCccccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCc
Q 001570 635 KGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPA 714 (1051)
Q Consensus 635 ~g~~v~~e~f~t~eL~ea~er~~~ae~~a~e~i~eiL~eL~~~L~~~~~~L~~l~~lla~Adal~~~a~~a~~~~~~~P~ 714 (1051)
.++..+.++|+|+++++.++++..++.++.....+++.++.+.+..+++.|..++..++..|++.++|..|...+||+|+
T Consensus 492 ~qt~kn~~rf~t~el~~~e~~i~~a~~~i~~lE~~l~~~~~~~i~~~~~~l~~~a~aLa~lD~l~slA~~a~~~~y~rP~ 571 (843)
T COG0249 492 RQTLKNAERFTTPELKELEEKLLDAEEKILALEYELFDELREKILAHINELQALAKALAELDVLSSLAEIAAEQNYVRPE 571 (843)
T ss_pred HHHHhcceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCce
Confidence 55556667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc----ccccccceeecccCCcccccCCCceeeeeEee---ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCC
Q 001570 715 LKDI----ELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE 787 (1051)
Q Consensus 715 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~vl~~isl---g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~ 787 (1051)
+++. +.+||||++... ....+|+||+++ +++++|||||||||||+||++|.+++|||+|+||||+
T Consensus 572 ~~~~~~l~i~~gRHPvvE~~--------~~~~fVpNd~~L~~~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA~ 643 (843)
T COG0249 572 FVDSNDLEIKEGRHPVVEAV--------LDNGFVPNDIDLSGNRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAE 643 (843)
T ss_pred ecCCCCEEEEecCcchhhhh--------ccCCcccCceeeCCCceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeHH
Confidence 9985 344555544222 222399999999 4899999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC-CcEE
Q 001570 788 SASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLG 866 (1051)
Q Consensus 788 ~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~-g~~v 866 (1051)
.+.++.+|+||+++|..|++..+.|||+.||.+++.|++.+++.|||||||.|+||++.||.+|+|+++++|++. ++.+
T Consensus 644 ~A~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~t 723 (843)
T COG0249 644 KARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRT 723 (843)
T ss_pred HccccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHHHHHhccCceE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999985 9999
Q ss_pred EEeccChhhhhCcccccccccceeEEEEeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 001570 867 IVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVN 942 (1051)
Q Consensus 867 i~~TH~~el~~l~~~~~~i~~~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~vi~rA~~~~~~~~~~ 942 (1051)
||+|||+|++++....+.+.|.||...+.++++.|.|++.+|.+++|||++||+++|+|.+||+||++++.+++..
T Consensus 724 LFATHy~ELt~l~~~~~~v~N~h~~~~e~~~~i~Fl~kv~~G~a~~SyGi~VAklaGlP~~Vi~rA~~il~~le~~ 799 (843)
T COG0249 724 LFATHYHELTELEEKLPQVKNYHMSAVEEGGDITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERAREILAELEKE 799 (843)
T ss_pred EEeccHHHHHHhhhcccccceeEEEEEEcCCceEEEEEeccCCCCccHHHHHHHHhCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999988999999999999999999999999999999999999999999999999999999998754
No 2
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=1.9e-109 Score=1029.46 Aligned_cols=740 Identities=22% Similarity=0.280 Sum_probs=599.3
Q ss_pred chHHHHHHHHhcCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCC-CC-CCCCccccccCcccHHHHHHHHHHCCceEE
Q 001570 126 TLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG-GL-RPESIPKAGCPVVNLRQTLDDLTRNGYSVC 203 (1051)
Q Consensus 126 ~~~~~~~~~K~~~p~~vll~r~Gdfye~~~~DA~~~~~~l~l~~~~-~~-~~~~~~~~g~P~~~~~~~l~~L~~~G~~va 203 (1051)
.|++|||++|++|||||||||||||||+||+||+++|++|||++|+ ++ .++++||||||+|+++.|+++||++|||||
T Consensus 3 Pm~~Qy~~iK~~~~D~iLffr~GdFYElf~eDA~~~a~~L~i~lt~r~~~~~~~~pm~GvP~ha~~~yl~kLv~~G~kVa 82 (840)
T TIGR01070 3 PMMQQYLKLKAEHPDALLFFRMGDFYELFYEDAKKAAQLLDISLTSRGQSADEPIPMAGIPYHAVEAYLEKLVKQGESVA 82 (840)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCeEEeecCCCCCCCCCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 4899999999999999999999999999999999999999999998 22 234699999999999999999999999999
Q ss_pred EEeccCCccccCCcceEeeeeeecCCCccccccccCCCCCCCCCCcc----EEEEEcCCceEEEEEeccccceeeeecCC
Q 001570 204 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMP----VIGVSRSAKGYCIISILETMKTYSLEDGL 279 (1051)
Q Consensus 204 i~eq~e~p~~ak~~v~R~v~~vvTPGT~~~~~~l~~~~~~~~~~a~~----~~gi~~~~~~~~~~s~~~~~~~~~v~~~~ 279 (1051)
||||+|+|+.+|++|+|+|++|+||||.+++++++++.+ ||++++. .+|| +|+|+|||+|. ++++.
T Consensus 83 i~eQ~e~~~~~kg~v~Rev~ri~TpGT~~~~~~l~~~~~-nyl~ai~~~~~~~gl-----a~~D~sTG~~~----~~~~~ 152 (840)
T TIGR01070 83 ICEQIEDPKTAKGPVEREVVQLITPGTVSDEALLPERQD-NLLAAIAQESNGFGL-----ATLDLTTGEFK----VTELA 152 (840)
T ss_pred EEEecCCchhcCCceeeEEEEEECCCcccccccccCCCC-ceEEEEEeCCCeEEE-----EEEEccccEEE----EEEec
Confidence 999999999999999999999999999999988887777 7776653 3555 66666666655 88887
Q ss_pred CHHHHHHHHHcCCcceEEEcCCcccCCCCCccccccCCC---Ccccccccccccccc---CCc----hHHHHHHHHhhhc
Q 001570 280 TEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEG---GLLWGECIARHFEWF---EGD----PVIELLLKVKELY 349 (1051)
Q Consensus 280 t~~~l~~~L~~~~p~Eill~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~f---~~~----~~~~ll~~v~~~~ 349 (1051)
+.+.+.++|.+++|+||+++.+....... .+..+... ..+...+....-+.| ... +...++.-+.+..
T Consensus 153 d~~~l~~~l~~~~P~Eil~~~~~~~~~~~--~~~~f~~~~~~~~l~~~f~~~~l~~~~~~~~~~~~~a~g~ll~Yl~~~~ 230 (840)
T TIGR01070 153 DKETLYAELQRLNPAEVLLAEDLSEMEAI--ELREFRKDTAVMSLEAQFGTEDLGGLGLRNAPLGLTAAGCLLQYAKRTQ 230 (840)
T ss_pred CHHHHHHHHhccCCeEEEEcCCCChHHHH--HhHhcchhHHHHHHHHhcCccchhhcCCCCCHHHHHHHHHHHHHHHHhC
Confidence 66779999999999999998764211000 00000000 000000000000000 000 0011111111110
Q ss_pred CCCCccccccccccCCccccc-eeecHHhhh--ccCCCC---CCCccceEecCCCccCCCHHHHHHhhhcCCcccHHHHH
Q 001570 350 GLENEVTFRNVTVSYENRPRP-LHLGTATQI--GAIPTE---GIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTI 423 (1051)
Q Consensus 350 gl~~~~~~~~~~~~~~~~~~~-LyLd~~Tq~--ell~~~---~~~sLl~v~l~~t~t~mg~r~LR~llL~P~~~sl~~~I 423 (1051)
......+..+. ...... |.||.+|.+ |++++. ...||+++ +++|.|+||+|+||+|++.|+. +.. .|
T Consensus 231 -~~~~~~~~~~~---~~~~~~~m~lD~~t~~~LEl~~~~~~~~~gSL~~~-ld~t~T~~G~RlLr~wl~~Pl~-d~~-~I 303 (840)
T TIGR01070 231 -RTALPHLQPVR---LYELQDFMQLDAATRRNLELTENLRGGKQNTLFSV-LDETKTAMGSRLLKRWLHRPLR-DRE-VL 303 (840)
T ss_pred -hhhhhhCCCcE---EECCCCEEEeCHHHHHhccCCccCCCCCCCcHHHH-HhhcCCHHHHHHHHHHhhCCCC-CHH-HH
Confidence 00000000000 001111 899999998 888872 23499999 9999999999999999999999 999 99
Q ss_pred HHHHhHhhhh-------------hcCCCcHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhhcChHHHHHHHhccCchhhc
Q 001570 424 QAICKLMSKV-------------TCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVA 490 (1051)
Q Consensus 424 ~~r~t~mg~~-------------l~~i~dlerL~~~L~~p~a~~~dl~~I~~rL~aV~~l~~~~~l~~~L~~~l~~~~~~ 490 (1051)
++|++.++.| |..+||++|+.+++..+.++++|+..+++.+..+ +.+++.+.....+
T Consensus 304 ~~Rld~Ve~l~~~~~l~~~l~~~L~~i~Dlerll~ri~~~~~~~~dl~~l~~~l~~~------~~l~~~l~~~~~~---- 373 (840)
T TIGR01070 304 EARQDTVEVLLRHFFLREGLRPLLKEVGDLERLAARVALGNARPRDLARLRTSLEQL------PELRALLEELEGP---- 373 (840)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHhccCcCHHHHHHHHHcCCCCHHHHHHHHHHHHHH------HHHHHHHHhcCcH----
Confidence 9999999987 8899999999999999999999999999999999 8888777654322
Q ss_pred ccchhhHHHhhhHhHHHHHHHHHhhhccCCchhhhccCCCCChhHHhhcchhhhhhhhhcccchhHHHHHHHHHHHHHhh
Q 001570 491 TGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAV 570 (1051)
Q Consensus 491 ~g~~~dlerl~~~~~~~~~~i~~~i~l~~e~p~~~~~~~~I~~~f~~~lds~~~g~V~~~~~~e~l~elr~l~~~L~~aI 570 (1051)
...++...+..+......++..+. +++|....+++.|++||++++| ++++..+.
T Consensus 374 --~l~~l~~~l~~~~~l~~~i~~~i~--~~~~~~~~~~~~I~~g~~~~Ld-----------------~lr~~~~~----- 427 (840)
T TIGR01070 374 --TLQALAAQIDDFSELLELLEAALI--ENPPLVVRDGGLIREGYDEELD-----------------ELRAASRE----- 427 (840)
T ss_pred --HHHHHHHhcccHHHHHHHHHHHHh--cCCccccccCCeeCCCCCHHHH-----------------HHHHHHHH-----
Confidence 223343444556667777888887 7888888889999999999988 77777777
Q ss_pred ccCch-hHHhhhhccccCCCCCchhhhhhhcccceeecccccccccccCCCCcccccc-ccccccccCccccceeeehHH
Q 001570 571 TEDFL-PIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQ-LKPAVDSKGRKVGEEWFSTLK 648 (1051)
Q Consensus 571 ~ed~l-pi~~re~~~ir~tgg~~~eI~y~~~~~~~~l~Gy~ieV~v~~~~~~~~~I~~-l~~~~~~~g~~v~~e~f~t~e 648 (1051)
.++++ .++.++++ ++|+.+.+++|++.+ ||+++|+. .....+|. +++.++.+ +.++|+|++
T Consensus 428 ~~~~l~~l~~~~~~---~~~i~~lk~~~~~~~------gy~iev~~----~~~~~vp~~~i~~~s~~----~~~rf~tpe 490 (840)
T TIGR01070 428 GTDYLARLEARERE---RTGIPTLKVGYNAVF------GYYIEVTR----GQLHLVPAHYRRRQTLK----NAERYITPE 490 (840)
T ss_pred HHHHHHHHHHHHHH---HcCCCceEEEEecCc------eEEEEEeh----hhhhcCCcceEEEEecc----CceEEcCHH
Confidence 34444 56666777 778889999998887 99999943 33455665 55555544 456789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCcccccccccccceee
Q 001570 649 VEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKM 728 (1051)
Q Consensus 649 L~ea~er~~~ae~~a~e~i~eiL~eL~~~L~~~~~~L~~l~~lla~Adal~~~a~~a~~~~~~~P~~~~~~~~~~~~~~~ 728 (1051)
+.+.++++.+++.++.+.+.+++.++...+..+...+..+...++.+|+++|+|..|..++||+|++++. ..+.+
T Consensus 491 l~~l~~~l~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~-----~~i~i 565 (840)
T TIGR01070 491 LKEKEDKVLEAEGKILALEKELFEELRELLKKYLEALQEAARALAELDVLANLAEVAETLHYTRPRFGDD-----PQLRI 565 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCceecCC-----CcEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874 12333
Q ss_pred c-ccCCcccccCCCceeeeeEeec---eEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCC
Q 001570 729 N-GLSPYWFDAAEGSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSY 804 (1051)
Q Consensus 729 ~-~~~~~~~~~~~~~~vl~~islg---~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~ 804 (1051)
. |.||+.-....+.+|+||++++ ++++|||||||||||+||+++.+++|||+|+||||+.+.++.+|+||+++|..
T Consensus 566 ~~~RHP~le~~~~~~~VpNdi~l~~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA~~a~i~~~D~Iftrig~~ 645 (840)
T TIGR01070 566 REGRHPVVEQVLRTPFVPNDLEMAHNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAESAELPLFDRIFTRIGAS 645 (840)
T ss_pred EeeECHHHHhccCCCeEeeeeecCCCccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccchheEeccccEEEEecCcc
Confidence 3 3333321111356999999993 59999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCccchhHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCcEEEEeccChhhhhCccccc
Q 001570 805 DSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIK 883 (1051)
Q Consensus 805 d~~~~~~stfs~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~-~g~~vi~~TH~~el~~l~~~~~ 883 (1051)
|++..+.|||+.||.+++.|++.+++++||||||+|+|||+.+|.+|+++++++|.+ .++.+||+||+++++.+....+
T Consensus 646 d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l~~~~~ 725 (840)
T TIGR01070 646 DDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTALEESLP 725 (840)
T ss_pred cchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHHhhhCC
Confidence 999999999999999999999999999999999999999999999999999999998 7999999999999999988889
Q ss_pred ccccceeEEEEeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 001570 884 NAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVN 942 (1051)
Q Consensus 884 ~i~~~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~vi~rA~~~~~~~~~~ 942 (1051)
++.|.+|.+...++++.|+|++.+|.+++|||++||+++|+|++||+||++++..++..
T Consensus 726 ~v~n~~~~~~~~~~~l~flYkl~~G~~~~Sygi~VA~laGlP~~VI~rA~~il~~le~~ 784 (840)
T TIGR01070 726 GLKNVHVAALEHNGTIVFLHQVLPGPASKSYGLAVAALAGLPKEVIARARQILTQLEAR 784 (840)
T ss_pred CeEEEEEEEEEECCcEEEEEEECCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 99999999988889999999999999999999999999999999999999999998743
No 3
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=8.4e-106 Score=1002.81 Aligned_cols=731 Identities=24% Similarity=0.326 Sum_probs=600.0
Q ss_pred chHHHHHHHHhcCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCC-CC-CCCCccccccCcccHHHHHHHHHHCCceEE
Q 001570 126 TLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG-GL-RPESIPKAGCPVVNLRQTLDDLTRNGYSVC 203 (1051)
Q Consensus 126 ~~~~~~~~~K~~~p~~vll~r~Gdfye~~~~DA~~~~~~l~l~~~~-~~-~~~~~~~~g~P~~~~~~~l~~L~~~G~~va 203 (1051)
.|++|||++|++|||+|||||||||||+||+||+++|++|||++|+ +. .++++||||||+|+++.|+++||++|||||
T Consensus 10 P~~~Qy~~iK~~~~D~ilffr~GdFYElf~eDA~~~s~~L~i~lt~r~~~~~~~~pm~GvP~h~~~~yl~kLv~~GyKVa 89 (854)
T PRK05399 10 PMMQQYLEIKAQYPDALLFFRMGDFYELFFEDAKKASRLLDITLTKRGKSAGEPIPMAGVPYHAAEGYLAKLVKKGYKVA 89 (854)
T ss_pred HHHHHHHHHHhhCCCEEEEEEcCCEEEEeHhhHHHHHHHhCeEEeeccCCCCCCCCEecCcHHHHHHHHHHHHHCCCEEE
Confidence 4999999999999999999999999999999999999999999998 21 235699999999999999999999999999
Q ss_pred EEeccCCccccCCcceEeeeeeecCCCccccccccCCCCCCCCCCcc----EEEEEcCCceEEEEEeccccceeeeecCC
Q 001570 204 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMP----VIGVSRSAKGYCIISILETMKTYSLEDGL 279 (1051)
Q Consensus 204 i~eq~e~p~~ak~~v~R~v~~vvTPGT~~~~~~l~~~~~~~~~~a~~----~~gi~~~~~~~~~~s~~~~~~~~~v~~~~ 279 (1051)
||||+|+|+.+|++|+|+|++|+||||.+++.+++++.+ ||+.++. .+|| +|+|++||++. ++++
T Consensus 90 I~EQ~e~~~~~k~~v~R~v~~i~TpGT~~~~~~l~~~~~-~yl~ai~~~~~~~Gi-----a~~D~stg~~~----~~~~- 158 (854)
T PRK05399 90 ICEQVEDPATAKGPVKREVVRIVTPGTVTDEALLDEKQN-NYLAAIAQDGGGYGL-----AYLDLSTGEFR----VTEL- 158 (854)
T ss_pred EEEecCChhhcCCccceEEEEEECCCeeecccccCCCCC-cEEEEEEECCCeEEE-----EEEECCCCeEE----EEEE-
Confidence 999999999999999999999999999998888777666 7765543 3555 56666666555 8887
Q ss_pred CHHHHHHHHHcCCcceEEEcCCcccCCCCCccccccCCCCccccccccccccc-cCCchHHHHHHHH---h--hhcCCCC
Q 001570 280 TEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEW-FEGDPVIELLLKV---K--ELYGLEN 353 (1051)
Q Consensus 280 t~~~l~~~L~~~~p~Eill~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-f~~~~~~~ll~~v---~--~~~gl~~ 353 (1051)
+.+.|.+.|.+++|+||+++.+....... .. .........| |+.+.+...+... . +.+|+..
T Consensus 159 ~~~~L~~~l~~~~P~Eil~~~~~~~~~~~--~~----------~~~~~~~~~~~f~~~~~~~~l~~~f~~~~~~~~~~~~ 226 (854)
T PRK05399 159 DEEELLAELARLNPAEILVPEDFSEDELL--LL----------RRGLRRRPPWEFDLDTAEKRLLEQFGVASLDGFGVDL 226 (854)
T ss_pred cHHHHHHHHHhcCCcEEEEcCCcchhhHh--hc----------cccceeccccccChHHHHHHHHHHhCcCCccccCCCC
Confidence 57889999999999999998764211100 00 0011122233 4333332222210 0 1122111
Q ss_pred ccc-------c---c--c-ccccCCcccc-----c-eeecHHhhh--ccCCC-CC--CCccceEecCCCccCCCHHHHHH
Q 001570 354 EVT-------F---R--N-VTVSYENRPR-----P-LHLGTATQI--GAIPT-EG--IPCLLKVLLPSNCSGLPILYVRD 409 (1051)
Q Consensus 354 ~~~-------~---~--~-~~~~~~~~~~-----~-LyLd~~Tq~--ell~~-~~--~~sLl~v~l~~t~t~mg~r~LR~ 409 (1051)
... + . + ...++...+. . |+||.+|.+ |++++ .+ ..||+++ +++|.|+||+|+||+
T Consensus 227 ~~~~~a~~all~Yl~~~~~~~~~~~~~~~~~~~~~~m~lD~~tl~~Lei~~~~~~~~~gSL~~~-ld~t~T~~G~RlLr~ 305 (854)
T PRK05399 227 PLAIRAAGALLQYLKETQKRSLPHLRSPKRYEESDYLILDAATRRNLELTENLRGGRKNSLLSV-LDRTVTAMGGRLLRR 305 (854)
T ss_pred HHHHHHHHHHHHHHHHhchhhhhccCCCEEECCCCEEEcCHHHHHhccCCccCCCCCCCcHHHH-hccCCCcHHHHHHHH
Confidence 000 0 0 0 0001111111 1 899999998 88887 22 2399999 999999999999999
Q ss_pred hhhcCCcccHHHHHHHHHhHhhhh-------------hcCCCcHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhhcChHH
Q 001570 410 LLLNPPAYEIASTIQAICKLMSKV-------------TCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSEL 476 (1051)
Q Consensus 410 llL~P~~~sl~~~I~~r~t~mg~~-------------l~~i~dlerL~~~L~~p~a~~~dl~~I~~rL~aV~~l~~~~~l 476 (1051)
|++.|+. +.. .|++|++.++.| |..+||++|+.+++..++++++|+..|++.+..+ +.+
T Consensus 306 wl~~Pl~-d~~-~I~~R~d~Ve~l~~~~~~~~~l~~~L~~i~Dlerll~ri~~~~~~~~dl~~l~~~l~~~------~~l 377 (854)
T PRK05399 306 WLHRPLR-DRE-AIEARLDAVEELLEDPLLREDLRELLKGVYDLERLLSRIALGRANPRDLAALRDSLEAL------PEL 377 (854)
T ss_pred HHhCcCC-CHH-HHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH------HHH
Confidence 9999999 998 999999999987 8899999999999999999999999999999999 888
Q ss_pred HHHHHhccCchhhcccchhhHHHhhhHhHHHHHHHHHhhhccCCchhhhccCCCCChhHHhhcchhhhhhhhhcccchhH
Q 001570 477 NEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEI 556 (1051)
Q Consensus 477 ~~~L~~~l~~~~~~~g~~~dlerl~~~~~~~~~~i~~~i~l~~e~p~~~~~~~~I~~~f~~~lds~~~g~V~~~~~~e~l 556 (1051)
+..+.....+ ++.++...+..+......++..+. +++|....+++.|++||++++|
T Consensus 378 ~~~l~~~~~~------~l~~l~~~l~~~~~l~~~i~~~i~--~~~~~~~~~~~~i~~g~~~~Ld---------------- 433 (854)
T PRK05399 378 KELLAELDSP------LLAELAEQLDPLEELADLLERAIV--EEPPLLIRDGGVIADGYDAELD---------------- 433 (854)
T ss_pred HHHHHhcCcH------HHHHHHhhcccHHHHHHHHHHHHc--cCCchhcccCCEECCCCCHHHH----------------
Confidence 8777654322 233444445566777778888887 7888888889999999999998
Q ss_pred HHHHHHHHHHHHhhccCchhHHhhhhccccCCCCCchhhhhhhcccceeecccccccccccCCCCcccccc-cccccccc
Q 001570 557 AEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQ-LKPAVDSK 635 (1051)
Q Consensus 557 ~elr~l~~~L~~aI~ed~lpi~~re~~~ir~tgg~~~eI~y~~~~~~~~l~Gy~ieV~v~~~~~~~~~I~~-l~~~~~~~ 635 (1051)
++++..+.+...+. .+..+++. ++|+.+.+++|++.+ ||+++|+. .....+|+ +++.+
T Consensus 434 -~lr~~~~~~~~~l~----~~~~~~~~---~~~~~~l~~~~~~~~------gy~iev~~----~~~~~vp~~~~~~~--- 492 (854)
T PRK05399 434 -ELRALSDNGKDWLA----ELEARERE---RTGISSLKVGYNKVF------GYYIEVTK----ANLDKVPEDYIRRQ--- 492 (854)
T ss_pred -HHHHHHHHHHHHHH----HHHHHHHH---HcCCCceEEEEcCce------eEEEEEEc----chhhhCChhhhhee---
Confidence 67777777333332 44445555 678888999999988 99999952 23445555 44444
Q ss_pred CccccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCcc
Q 001570 636 GRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPAL 715 (1051)
Q Consensus 636 g~~v~~e~f~t~eL~ea~er~~~ae~~a~e~i~eiL~eL~~~L~~~~~~L~~l~~lla~Adal~~~a~~a~~~~~~~P~~ 715 (1051)
+..+.++|+|+++.+.++++..++.++.+...+++.++...+..+...+..+...++.+|+++|+|..|...+||+|++
T Consensus 493 -s~~~~~rf~t~~l~~l~~~l~~~~~~~~~~e~~i~~~l~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~ 571 (854)
T PRK05399 493 -TLKNAERYITPELKELEDKILSAEEKALALEYELFEELREEVAEHIERLQKLAKALAELDVLASLAEVAEENNYVRPEF 571 (854)
T ss_pred -eccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCccccEE
Confidence 4455677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc----ccccccceeecccCCcccccCCCceeeeeEee---ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCC
Q 001570 716 KDI----ELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES 788 (1051)
Q Consensus 716 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~vl~~isl---g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~ 788 (1051)
+++ +.++|||+....+ ..+.+|+||+.+ +++++|||||||||||+||+++.+++|||+|+||||..
T Consensus 572 ~~~~~l~i~~~rHP~le~~~-------~~~~~vpnd~~l~~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~ 644 (854)
T PRK05399 572 TDDPGIDIEEGRHPVVEQVL-------GGEPFVPNDCDLDEERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAES 644 (854)
T ss_pred eCCCCEEEEeccCcEEeccc-------CCCceEecceeeCCCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccc
Confidence 874 3445555432111 246799999999 47999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC-CcEEE
Q 001570 789 ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGI 867 (1051)
Q Consensus 789 ~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~-g~~vi 867 (1051)
+.++.+|+||+++|..|++..+.|||+.||.+++.|+..+++++||||||||+||++.+|.++++++++++.+. ++++|
T Consensus 645 a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l 724 (854)
T PRK05399 645 ARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTL 724 (854)
T ss_pred eEecccCeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986 59999
Q ss_pred EeccChhhhhCcccccccccceeEEEEeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Q 001570 868 VSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGV 941 (1051)
Q Consensus 868 ~~TH~~el~~l~~~~~~i~~~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~vi~rA~~~~~~~~~ 941 (1051)
|+||++++.++....+++.|.||.+...++++.|+|++.+|.+++|||++||+++|+|++||+||++++..++.
T Consensus 725 ~aTH~~el~~l~~~~~~v~n~~m~~~~~~~~l~flYkl~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~le~ 798 (854)
T PRK05399 725 FATHYHELTELEEKLPGVKNVHVAVKEHGGDIVFLHKVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQLES 798 (854)
T ss_pred EEechHHHHHHhhhcCCeEEEEEEEEEeCCeEEEEEEeCcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 99999999999888899999999998888999999999999999999999999999999999999999999884
No 4
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=3.2e-77 Score=677.87 Aligned_cols=758 Identities=18% Similarity=0.190 Sum_probs=533.6
Q ss_pred chHHHHHHHHhcCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCCCCCCCCccccccCcccHHHHHHHHHHCCceEEEE
Q 001570 126 TLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIV 205 (1051)
Q Consensus 126 ~~~~~~~~~K~~~p~~vll~r~Gdfye~~~~DA~~~~~~l~l~~~~~~~~~~~~~~g~P~~~~~~~l~~L~~~G~~vai~ 205 (1051)
.|++||.|+|.+|+|+||..+||.-|.+|||||+++||+|||.+.- ++++..|.||-|.++.|+.|||.+||||||+
T Consensus 164 PLeqQ~~elK~~h~d~VL~ievGYkyRfFgeDAeiasrvLgIych~---dhnFmtaS~P~~Rl~vHleRLv~~g~KVaVV 240 (1070)
T KOG0218|consen 164 PLEQQVKELKMHHRDKVLVIEVGYKYRFFGEDAEIASRVLGIYCHN---DHNFMTASFPDVRLNVHLERLVHHGLKVAVV 240 (1070)
T ss_pred cHHHHHHHHHhhCCceEEEEEecceEEeecccHHHHHHhhceEEEe---ccceeeccCCcchhhHHHHHHHhcCceEEEE
Confidence 4999999999999999999999999999999999999999999985 6789999999999999999999999999999
Q ss_pred eccCCccccC------CcceEeeeeeecCCCccccc--cccCCCCCCCCCCccEEEEEc----CC-----ceEEEEEecc
Q 001570 206 EEVQGPTQAR------SRKSRFISGHAHPGSPYVFG--LVGIDHDLDFPEPMPVIGVSR----SA-----KGYCIISILE 268 (1051)
Q Consensus 206 eq~e~p~~ak------~~v~R~v~~vvTPGT~~~~~--~l~~~~~~~~~~a~~~~gi~~----~~-----~~~~~~s~~~ 268 (1051)
+|+|+++.++ +++.|.+++|+|.||..+.. ++..++-++ ..+.+++|+.. ++ --++.+.+..
T Consensus 241 kQtETAAiKs~gasRsslF~RklsavyTKaTl~eds~~~~r~e~~~~-~~ssfllcv~dn~~ksk~ksg~v~vgligVql 319 (1070)
T KOG0218|consen 241 KQTETAAIKSHGASRSSLFERKLSAVYTKATLGEDSTFVLRGERILG-DTSSFLLCVRDNVHKSKEKSGVVKVGLIGVQL 319 (1070)
T ss_pred eehhhHHHHhcCCcccchHHHHHHHHhhhhhhccccccccchhhhcC-CcceEEEEEehhhhhhhhhcCceEEEEEEEec
Confidence 9999986543 56999999999999975321 121111111 13456777753 11 1478999999
Q ss_pred ccceeeeecCCC---HHHHHHHHHcCCcceEEEcCCcccCCCCCccccccCCCCcccccccccc-ccccC-CchHHHHHH
Q 001570 269 TMKTYSLEDGLT---EDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARH-FEWFE-GDPVIELLL 343 (1051)
Q Consensus 269 ~~~~~~v~~~~t---~~~l~~~L~~~~p~Eill~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~f~-~~~~~~ll~ 343 (1051)
.+|++...+|.+ .++|.+.+..++|.|++++..+...+.. + +... +..+... -.-|. ++++.+...
T Consensus 320 stGevVydeFqdnf~rseLqtrisslqP~ElLl~~~ls~qt~a---l--l~~~----~Vsve~~~~rv~r~~naV~q~ik 390 (1070)
T KOG0218|consen 320 STGEVVYDEFQDNFARSELQTRISSLQPIELLLNTDLSPQTVA---L--LFKD----NVSVELIHKRVYRLENAVVQAIK 390 (1070)
T ss_pred CCCcEehHhhhhhHHHHHHHHHHhccCcceeecCCCCcHHHHH---H--HHhc----ccchhhhhhhhhhchhHHHHHHH
Confidence 999997777764 4558889999999999999887322110 0 0000 0000000 00011 111211111
Q ss_pred ----HHhhhcC----CCCcccccccc-ccCC-ccc-cc-e--eecHHhhhc-cCCCCCCCccceEecCCCccCCCHHHHH
Q 001570 344 ----KVKELYG----LENEVTFRNVT-VSYE-NRP-RP-L--HLGTATQIG-AIPTEGIPCLLKVLLPSNCSGLPILYVR 408 (1051)
Q Consensus 344 ----~v~~~~g----l~~~~~~~~~~-~~~~-~~~-~~-L--yLd~~Tq~e-ll~~~~~~sLl~v~l~~t~t~mg~r~LR 408 (1051)
++.+.+. +++......+. .++. +.+ .. + || .+...| ++-. ++..+..-....|.++..+|+
T Consensus 391 la~e~~q~f~~~k~~l~gs~ii~li~nl~~psvic~la~~is~l-kefnlE~~l~~---psf~s~~ss~e~Mtls~ntLq 466 (1070)
T KOG0218|consen 391 LANEKIQNFEDDKEMLEGSEIICLIMNLSHPSVICLLAKLISHL-KEFNLEQVLLI---PSFYSPFSSKEHMTLSPNTLQ 466 (1070)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhcCCCchHHHHHHHHHHHH-HHhchHHheec---ccccCcccccceeeechhhhh
Confidence 1221111 11111000000 0001 111 11 1 44 222222 2222 455555333456899999999
Q ss_pred HhhhcCCc------ccHHHHHHHHHhHhhhhhcCCCcHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhh---cChHHHHH
Q 001570 409 DLLLNPPA------YEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMY---GNSELNEI 479 (1051)
Q Consensus 409 ~llL~P~~------~sl~~~I~~r~t~mg~~l~~i~dlerL~~~L~~p~a~~~dl~~I~~rL~aV~~l~---~~~~l~~~ 479 (1051)
+|+++.+. |+|+|.+|+|.|.+|. |.|+.|+..| +.|...|.+|||||+++- .++...+.
T Consensus 467 ~Leif~nqtd~~~kGSLfwvldhT~TsfG~--------RmLr~WvtkP---Lvd~~~I~eRLDAVeeitshssnS~vf~s 535 (1070)
T KOG0218|consen 467 SLEIFTNQTDGSEKGSLFWVLDHTRTSFGL--------RMLREWVTKP---LVDVHQIEERLDAVEEITSHSSNSIVFES 535 (1070)
T ss_pred ceeeeeecCCCCcccceEEEeccchhHHHH--------HHHHHHHhcc---cccHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 99999987 6999999999999999 9999999999 999999999999998772 45557788
Q ss_pred HHhccCchhhcccchhhHHHhhhHhHHHHHHH-HHhhhccCCchhhhc---------cCCCCChhHHhhcchhhhhh---
Q 001570 480 LELLMDPTWVATGLKIDFETLVEECRLASVRI-GEMISLDGESDQKIC---------SYDNIPSEFFEDMESTWKGR--- 546 (1051)
Q Consensus 480 L~~~l~~~~~~~g~~~dlerl~~~~~~~~~~i-~~~i~l~~e~p~~~~---------~~~~I~~~f~~~lds~~~g~--- 546 (1051)
+..+|...+ |++|-+++|...++.+ ++++......-...+ +-..++++... ..++++.+
T Consensus 536 i~~~l~rlp-------Dl~rgL~rIy~~tCtp~~eff~vlk~iy~a~s~fq~~~~~~~~~~~s~~~s~-~qS~LLrrlis 607 (1070)
T KOG0218|consen 536 INQMLNRLP-------DLLRGLNRIYYGTCTPRKEFFFVLKQIYSAVSHFQMHQSYLEHFKSSDGRSG-KQSPLLRRLIS 607 (1070)
T ss_pred HHHHHHhCc-------HhHhhHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccch-hccHHHHHHHH
Confidence 888888777 9999999999998888 555432000000000 00011110000 00111000
Q ss_pred -hhhcccchhHHHHHHHHH----------HHHHhhccCchhHHhhhhc---ccc------------------CCCCCchh
Q 001570 547 -VKRIHIEPEIAEVEMAAE----------ALSLAVTEDFLPIISRIKA---TTA------------------PLGGPKGE 594 (1051)
Q Consensus 547 -V~~~~~~e~l~elr~l~~----------~L~~aI~ed~lpi~~re~~---~ir------------------~tgg~~~e 594 (1051)
+.+..+...++-+-.+.+ ++...+ .+| |...+-+. +|+ .+..++++
T Consensus 608 el~~p~~~s~~~hfL~mln~~aa~~gnk~d~fkd~-snf-pl~~e~~di~~virE~~ms~~~~~~hLaeiRk~Lk~pnle 685 (1070)
T KOG0218|consen 608 ELNEPLSTSQLPHFLTMLNVSAAMEGNKDDQFKDF-SNF-PLYDESEDIIKVIRESEMSRSQLKEHLAEIRKYLKRPNLE 685 (1070)
T ss_pred HhcCccccccHHHHHHHhhHHHHhhCChHHhhhhh-ccC-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 000000000000000000 000000 112 22111111 111 11122222
Q ss_pred hhhhhcccceeecccccccccccCCCCccccccccccccccCccccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001570 595 ILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGL 674 (1051)
Q Consensus 595 I~y~~~~~~~~l~Gy~ieV~v~~~~~~~~~I~~l~~~~~~~g~~v~~e~f~t~eL~ea~er~~~ae~~a~e~i~eiL~eL 674 (1051)
|..+.+ -.|.||+ ...+++.++.+|-..+.+....+|+||++.+....+....+.+.-.-..+..++
T Consensus 686 --f~~vsg----v~flIEv-------kns~~kkiP~dWiKvnsTk~vsRfhtP~iq~~l~eL~~~~e~L~i~sea~~~sF 752 (1070)
T KOG0218|consen 686 --FRQVSG----VDFLIEV-------KNSQIKKIPDDWIKVNSTKMVSRFHTPRIQKLLQELEYYKELLIIESEAQYKSF 752 (1070)
T ss_pred --eEEecC----eeEEEEe-------cccccccCCccceeeccceeeeecCCHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 111110 1344555 124677788899989988888999999999988877766665555555566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCccccc-----ccccccceeecccCCcccccCCCceeeeeEe
Q 001570 675 SSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDI-----ELDGANCLKMNGLSPYWFDAAEGSAVHNTVD 749 (1051)
Q Consensus 675 ~~~L~~~~~~L~~l~~lla~Adal~~~a~~a~~~~~~~P~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~vl~~is 749 (1051)
...+.++-..+..+...++..||++++|..+...+||||+++++ +..||||+. -.+.++.+||||+.
T Consensus 753 L~kiSehYtelrkat~~LatlDCi~SlA~~s~n~nYvRPtfvd~~~eI~ikngRhPvI--------e~Ll~d~fVPNdi~ 824 (1070)
T KOG0218|consen 753 LNKISEHYTELRKATLNLATLDCILSLAATSCNVNYVRPTFVDGQQEIIIKNGRHPVI--------ESLLVDYFVPNDIM 824 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCcccccchhhhhhhcCCCchH--------HHHhhhccCCCcce
Confidence 77777777777777777888899999999999999999999985 455666554 22235569999999
Q ss_pred e----ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHH
Q 001570 750 M----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV 825 (1051)
Q Consensus 750 l----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il 825 (1051)
+ +++.+||||||+|||+++|+++.+.+|||+|+||||+.+.++++|.+|++||..|++..+.|||+.||.....|+
T Consensus 825 ls~egerc~IITGPNMGGKSsyIrQvALitIMAQiGsfVPAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil 904 (1070)
T KOG0218|consen 825 LSPEGERCNIITGPNMGGKSSYIRQVALITIMAQIGSFVPAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEIL 904 (1070)
T ss_pred ecCCCceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCccchHHhhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHH
Confidence 9 579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCcEEEEeccChhhhhCcccc-cccccceeEEEEeC-------
Q 001570 826 TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKI-KNAAYKAMGTEYLD------- 896 (1051)
Q Consensus 826 ~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~-~g~~vi~~TH~~el~~l~~~~-~~i~~~~~~~~~~~------- 896 (1051)
..+++.+|+||||.|+||.+.+|.+|+.+.++|+.+ ..+.++|+||++.+.++.... ..+.++||+....+
T Consensus 905 ~kat~~SlvilDElGRGTsThDGiAIsYAtL~yf~~~~k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~sedk~~~d~ 984 (1070)
T KOG0218|consen 905 KKATKRSLVILDELGRGTSTHDGIAISYATLKYFSELSKCLILFVTHFPMLGEIESGFPGQVRNYHMGYLESEDKTGEDW 984 (1070)
T ss_pred HhcccchhhhhHhhcCCCccccchhHHHHHHHHHHHhhceeEEeeecCcchhhhhcCCCccccceeeeeeeeccccCCCc
Confidence 999999999999999999999999999999999976 578999999999999886654 45779999975532
Q ss_pred CceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Q 001570 897 GQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVN 942 (1051)
Q Consensus 897 ~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~vi~rA~~~~~~~~~~ 942 (1051)
+.+.|+|++..|.+.+|||+.||+++++|.++|.||-.+.+.+|..
T Consensus 985 dsVtfLYklvrGlasrSyGlnVAklA~ip~sii~rA~siSeeleke 1030 (1070)
T KOG0218|consen 985 DSVTFLYKLVRGLASRSYGLNVAKLARIPKSIINRAFSISEELEKE 1030 (1070)
T ss_pred hhhhhHHHHhhhhhhccccccHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999998754
No 5
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=3.3e-75 Score=687.74 Aligned_cols=800 Identities=20% Similarity=0.208 Sum_probs=564.6
Q ss_pred hhcCCccHHHHHHhcccccccCcccccccCc---cccCchHHHHHHHHhcCCCeEEEEeecchhhhHHHHHHHHHHHhCC
Q 001570 91 QMCRKPSTLHLVNRLKYSNLLGLDVNLKNGS---LKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGL 167 (1051)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~K~~~p~~vll~r~Gdfye~~~~DA~~~~~~l~l 167 (1051)
+.|-.+-...=..+=-.++|.+.+.++.--. .|.+....|||+||++|.|+|+||++|.|||+|..||.+.++.++|
T Consensus 212 ~r~l~~e~~RD~~rrr~~dp~yDp~TLyiP~s~~~kftpg~kqwWeiKs~~fD~ivfFk~GKFyELye~DA~vg~~~~dl 291 (1125)
T KOG0217|consen 212 ERYLKLEDVRDALRRRRGDPEYDPRTLYIPPSFWKKFTPGEKQWWEIKSDNFDTIVFFKKGKFYELYEMDALVGARLFDL 291 (1125)
T ss_pred hhhccHHHhhhhhcCCCCCCCCCccceecCHHHHhcCCchhhhhhhhhhhcccEEEEEecchHHHHHhhhhhhhhhhcce
Confidence 4555555554455555677877666654322 2344578899999999999999999999999999999999999999
Q ss_pred CcCCCCCCCCccccccCcccHHHHHHHHHHCCceEEEEeccCCcccc------C----CcceEeeeeeecCCCccccccc
Q 001570 168 NPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQA------R----SRKSRFISGHAHPGSPYVFGLV 237 (1051)
Q Consensus 168 ~~~~~~~~~~~~~~g~P~~~~~~~l~~L~~~G~~vai~eq~e~p~~a------k----~~v~R~v~~vvTPGT~~~~~~l 237 (1051)
+.|+ +++||+|||.++++.|+++|+++|||||.+||.|.|-+. + ++|+|+|++|+|-||.|+.+++
T Consensus 292 ~f~~----vN~~~~GfPE~sf~~~a~q~iq~GYkvarVEQtEt~l~~e~r~~~~~~kdkvvrRev~~ilt~GT~td~~l~ 367 (1125)
T KOG0217|consen 292 KFMD----VNMPHSGFPEGSFDYWADQFIQKGYKVARVEQTETPLGKEIRERKTGKKDKVVRREVCRILTNGTLTDIALL 367 (1125)
T ss_pred eecc----cccccCCCCccchhhHHHHHHhccceeeeeccccChHHhhhhhcccccchhhHHHHHHHHhcCCcchhHHHh
Confidence 9997 689999999999999999999999999999999998432 1 4799999999999999987765
Q ss_pred cCCCCCCCCCCccE--EEEEcCCceEEEEEeccccceeeeecCCCHHH---HHHHHHcCCcceEEEcCCcccCCCCCccc
Q 001570 238 GIDHDLDFPEPMPV--IGVSRSAKGYCIISILETMKTYSLEDGLTEDA---LVTKLRTSRYHHLFLHTSLRQNTSGTSRW 312 (1051)
Q Consensus 238 ~~~~~~~~~~a~~~--~gi~~~~~~~~~~s~~~~~~~~~v~~~~t~~~---l~~~L~~~~p~Eill~~~~~~~~~~~~~~ 312 (1051)
..+.. .|+.++-- -..+.....|+.+.++..+|++.+.||.++.. |.+.|....|.|++...+..... |.+.
T Consensus 368 ~~~~a-kylmai~e~~~~~~~~~~s~gvc~iDtstge~~~~eF~DDr~~s~L~tlLs~~rp~E~I~e~~~ls~~--t~~~ 444 (1125)
T KOG0217|consen 368 TSDLA-KYLMAIKESEESYSTGEVSFGVCFIDTSTGEINIGEFCDDRHCSKLDTLLSQVRPVELIEERKNLSDP--TKVI 444 (1125)
T ss_pred ccHHH-HHHHHHhhcCCCCCcCceeeeEEEEEcccceEEEEEeecchhhhHHHHHHHcccHHHHHHHhhccCCc--eeee
Confidence 44432 34333210 00001111344444444445555888875443 88999999999999877652221 1111
Q ss_pred ccc-CCCCccccccccccccccCCchHHHHHHHHhhhc---CCCCccccc---cccccCCccccc--e-eecHHhhh--c
Q 001570 313 GEY-GEGGLLWGECIARHFEWFEGDPVIELLLKVKELY---GLENEVTFR---NVTVSYENRPRP--L-HLGTATQI--G 380 (1051)
Q Consensus 313 ~~~-~~~~~l~~~~~~~~~~~f~~~~~~~ll~~v~~~~---gl~~~~~~~---~~~~~~~~~~~~--L-yLd~~Tq~--e 380 (1051)
..+ -..+..++.+. ...-|-.......++.. +-| |+++.+..- +..-+.+..+.+ + || ..... +
T Consensus 445 ik~~~~~~~~~n~~~-~~eFwdsek~~~eii~~--dy~~~~g~e~~~sil~~p~~~~~la~safg~~~~Yl-k~~~id~~ 520 (1125)
T KOG0217|consen 445 IKLKLSSNLVENLVP-KSEFWDSEKTGREIISE--DYFESLGLEDSPSILKSPNTDKELALSAFGGLFYYL-KKLLIDEE 520 (1125)
T ss_pred eeeeecchhhhcccC-hhhhcchhhHHHHHhhh--hhhhcccccCchhhccCCCccchhhHHHHHHHHHHH-HHHhhHHH
Confidence 111 01122334331 11224111122222221 212 455543210 000012334444 2 55 22222 3
Q ss_pred cCCCCCCCccceEecCCCccCCCHHHHHHhhhcCCc------ccHHHHHHHHHhHhhhhhcCCCcHHHHHHHHhcCCCCc
Q 001570 381 AIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPA------YEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANH 454 (1051)
Q Consensus 381 ll~~~~~~sLl~v~l~~t~t~mg~r~LR~llL~P~~------~sl~~~I~~r~t~mg~~l~~i~dlerL~~~L~~p~a~~ 454 (1051)
++.-. +...+.. ++...|.||..+|+|++++++. |+|+..+++|.|++|. |++++|+.+| +
T Consensus 521 llsm~-n~~ey~~-~~~s~mvlD~~tL~NleIf~Ns~~G~~~gtL~~~~~~csTpfGK--------Rllk~Wl~~P---l 587 (1125)
T KOG0217|consen 521 LLSMK-NFEEYDS-LDQSEMVLDGATLENLEIFSNSRNGGDEGTLFYAVNRCSTPFGK--------RLLKTWLMAP---L 587 (1125)
T ss_pred Hhhhh-hhhhcch-hcccceeecchhhhhhhhhccCCCCCCchhHHHHHhhccChHHH--------HHHHHHhhCc---C
Confidence 33221 1222222 3345599999999999999997 5999999999999999 9999999999 9
Q ss_pred ccHHHHHHHHHHHHHhhcChHHHHHHHhccCchhhcccchhhHHHhhhHhHHHHHH----HHHhhhccC-----------
Q 001570 455 IEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVR----IGEMISLDG----------- 519 (1051)
Q Consensus 455 ~dl~~I~~rL~aV~~l~~~~~l~~~L~~~l~~~~~~~g~~~dlerl~~~~~~~~~~----i~~~i~l~~----------- 519 (1051)
.+-..|++||++|..+..+|..+..+...+..+| |+||++.|++.+... |.+.+...+
T Consensus 588 ~~~~~I~~R~dav~~l~~~~~~~~~~~e~l~klP-------DlERlL~Rih~~~~~~~k~i~~f~rvLegfk~~~~~~~~ 660 (1125)
T KOG0217|consen 588 CDKEDIKQRQDAVDSLGKAPMDRTKVGETLKKLP-------DLERLLVRIHNGGEKNKKKIADFIRVLEGFKEINKLLGS 660 (1125)
T ss_pred CCHHHHHHHHHHHHHHhcCchhHHHHHHHHhhCC-------cHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888 999999999877555 223222100
Q ss_pred --------CchhhhccC-CCCChhHHhhcc--hhhhh---------hhhhcccchhHHHHHHHHHHHHHhhccCchhHHh
Q 001570 520 --------ESDQKICSY-DNIPSEFFEDME--STWKG---------RVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIIS 579 (1051)
Q Consensus 520 --------e~p~~~~~~-~~I~~~f~~~ld--s~~~g---------~V~~~~~~e~l~elr~l~~~L~~aI~ed~lpi~~ 579 (1051)
+.-..+++. +-.|+ +..++. ..++. .++....++++++..+-.+.++..+. .+..
T Consensus 661 ~~~v~~~~~~~~~is~~~~~~p~-~~~~i~~~~~af~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~L~----~~L~ 735 (1125)
T KOG0217|consen 661 LINVLKEGEGLRLISELLESMPN-LSEEIENWTEAFDRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAENELL----AYLE 735 (1125)
T ss_pred HHHHHHhhHHHHHHHHHhcCcch-hhHHHHHHHHHHHHHHHhhcCccCCCccccHHHHHHhhHHHHHHHHHH----HHHH
Confidence 000000000 00110 111110 00111 11223333333343333333222221 2222
Q ss_pred hhhccccCCCCCchhhhhhhcccceeecccccccccccCCCCccccccccccccccCccccceeeehHHHHHHHHHHHHH
Q 001570 580 RIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEA 659 (1051)
Q Consensus 580 re~~~ir~tgg~~~eI~y~~~~~~~~l~Gy~ieV~v~~~~~~~~~I~~l~~~~~~~g~~v~~e~f~t~eL~ea~er~~~a 659 (1051)
.-+. ++| ...|.|+.+... -|.+|++... +.+.- ..|-...+.....+|+++++......+.++
T Consensus 736 ~~rk---~l~--c~si~~~~vGk~----~y~lEvP~n~------~~~s~-~~~~~~S~~Kg~~RY~tp~~~kli~~l~~a 799 (1125)
T KOG0217|consen 736 EYRK---RLG--CSSIVFVDVGKD----VYQLEVPENG------GVPSS-LRYELMSAKKGVSRYYTPDLRKLIAHLDEA 799 (1125)
T ss_pred HHHH---hcC--CCceeEeecCce----EEEEecCccc------CCCCc-hHHHHHHhhcCcccccCHHHHHHHHHHHHH
Confidence 2222 222 333455544322 4556664222 22222 334444455566778999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--ccccccCcccccccccccceeecccCCcccc
Q 001570 660 GAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGR--RRKWVFPALKDIELDGANCLKMNGLSPYWFD 737 (1051)
Q Consensus 660 e~~a~e~i~eiL~eL~~~L~~~~~~L~~l~~lla~Adal~~~a~~a~--~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1051)
++..+.-.-...+.+..++.++....+.....++.+|+++++|..|. ...+|+|++.+. .+....+.+.++.|+++.
T Consensus 800 ee~~~~~~~d~~~r~~~~f~~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~-~dt~~~l~~~~~~Hpcfs 878 (1125)
T KOG0217|consen 800 EERKKSSLSDLKRRLIVRFDEHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVES-TDTPGFLIVKGLRHPCFS 878 (1125)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeecc-cCCCceeEEecccCceee
Confidence 88777766677777777777777777777778888888888877664 457899999875 333224666777777766
Q ss_pred cC--CCceeeeeEeec-----eEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCCccCC
Q 001570 738 AA--EGSAVHNTVDMQ-----SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADG 810 (1051)
Q Consensus 738 ~~--~~~~vl~~islg-----~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~ 810 (1051)
.. ++.+++|++.+| .+.++|||||+|||||||++|.+++|+|+|++||++.+.++.+|.||+++|..|.+..+
T Consensus 879 l~s~~~~fipN~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~im~g 958 (1125)
T KOG0217|consen 879 LPSTGTSFIPNDVELGGAEENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDIMSG 958 (1125)
T ss_pred cCcCCCccccchhhccccccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccchhcC
Confidence 43 457899999994 46679999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCcEEEEeccChhhhhCcccccccccce
Q 001570 811 KSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKA 889 (1051)
Q Consensus 811 ~stfs~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~-~g~~vi~~TH~~el~~l~~~~~~i~~~~ 889 (1051)
.|||..++.+...|+..++..+||++||.++||.+.+|.+|+.+++++|.. .+|..+|+||||.++....+.+.+..++
T Consensus 959 ~STF~vELsET~~IL~~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~~~~~~~p~Vrl~~ 1038 (1125)
T KOG0217|consen 959 ESTFFVELSETKKILKHATRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLCVDFMHHPQVRLLH 1038 (1125)
T ss_pred CceEEEeccchHHHHhhcCccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCccccccchhHhhhcCccccchh
Confidence 999999999999999999999999999999999999999999999999987 6899999999999998888888899999
Q ss_pred eEEEEeCCc-eeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhcccc
Q 001570 890 MGTEYLDGQ-TVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNC 943 (1051)
Q Consensus 890 ~~~~~~~~~-l~~~y~l~~G~~~~s~ai~vA~~~Glp~~vi~rA~~~~~~~~~~~ 943 (1051)
|.....++. +.|+|++.+|.|++|||+.+|+++|+|..||++|......++..-
T Consensus 1039 Ma~~vd~e~~vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~e~~~ 1093 (1125)
T KOG0217|consen 1039 MACVVDEEIDVTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHELEKSS 1093 (1125)
T ss_pred heeeecCCccEEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 998777666 999999999999999999999999999999999999999887543
No 6
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=8.7e-55 Score=505.66 Aligned_cols=747 Identities=19% Similarity=0.222 Sum_probs=513.3
Q ss_pred CCCeEEEEeecchhhhHHHHHHHHHHHh-----CCCcCCCCCCCCccccccCcccHHHHHHHHH-HCCceEEEEeccCCc
Q 001570 138 FPREVLLCRVGDFYEAIGIDACILVEYA-----GLNPFGGLRPESIPKAGCPVVNLRQTLDDLT-RNGYSVCIVEEVQGP 211 (1051)
Q Consensus 138 ~p~~vll~r~Gdfye~~~~DA~~~~~~l-----~l~~~~~~~~~~~~~~g~P~~~~~~~l~~L~-~~G~~vai~eq~e~p 211 (1051)
..++|-||--||||..|||||..+|+.. -++.+......+..-+.+-..++...++.|+ ..+|||-+++--+
T Consensus 29 p~~tvr~fdrge~ytv~geDa~~va~~v~kt~~~~k~l~~~~~~~~~~v~ls~~~~e~~vr~~l~~~~~~Ve~y~~~~-- 106 (902)
T KOG0219|consen 29 PTTTVRFFDRGEYYTVHGEDAEFVARNVYKTQAVIKTLSPDNAKNTKEVSLSKGNFEKVVRELLLVLRYRVEVYSSNQ-- 106 (902)
T ss_pred CCceEEEecCcceEEEeccchhhhhhhhhhhhhhheecCCcccccceEEEecHHHHHHHHHHHHHHhccceEEeecCc--
Confidence 4489999999999999999999999864 3443321122345558888889999999887 7999999998542
Q ss_pred cccCCcceEeeeeeecCCCccccccccCCCCCCCCCCccEEEEE----cCCc--eEEEEEeccccceeeeecCCCHHH--
Q 001570 212 TQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVS----RSAK--GYCIISILETMKTYSLEDGLTEDA-- 283 (1051)
Q Consensus 212 ~~ak~~v~R~v~~vvTPGT~~~~~~l~~~~~~~~~~a~~~~gi~----~~~~--~~~~~s~~~~~~~~~v~~~~t~~~-- 283 (1051)
-.++++.=-+||...+...+.-+++ +-+.++...++. ...+ |+|.+.+..+. +.+.++.+.+.
T Consensus 107 ------~~w~l~~~~sPGN~~~fedll~~~~-~v~is~~~~~v~~~~~~~~~~vgv~~~d~~~~k--~~~~ef~Dn~~~s 177 (902)
T KOG0219|consen 107 ------GDWKLTKRGSPGNLVQFEDLLFSNN-DVPISIISLIVKHPGVDGQRRVGVAFVDTINVK--IGLSEFVDDDSFS 177 (902)
T ss_pred ------cceeEEecCCCCcHHHHHHHHcccc-cchhhhhheeEEeeccCCCceeEEEEechhhee--eehhhhcCcHHHH
Confidence 2233334448999865554444433 222223222221 1112 44444444443 55777776555
Q ss_pred -HHHHHHcCCcceEEEcCCcccCCCCCccccc-cCCCCccccccccccccccCCchHHHHHHHHhhhcC----CCCcccc
Q 001570 284 -LVTKLRTSRYHHLFLHTSLRQNTSGTSRWGE-YGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYG----LENEVTF 357 (1051)
Q Consensus 284 -l~~~L~~~~p~Eill~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~f~~~~~~~ll~~v~~~~g----l~~~~~~ 357 (1051)
+...+...+|.|++++.+...+.- .+... +...|++.....+..+.| ..+...+...++ ....+++
T Consensus 178 nle~~l~~lg~kEcll~~~~~~~~~--~kl~~~~~r~g~~~t~~~~~e~~~------kdv~~~l~~~l~~~~~~~~~~e~ 249 (902)
T KOG0219|consen 178 NLEALLIQLGPKECVLPEGSVAGEM--KKLRNIIDRCGVLITLRKKSESSW------KDVEQDLNRLLKSQEHAAYLPEL 249 (902)
T ss_pred HHHHHHHhcCCeEEEecCcccchHH--HHHHHHHhccCeEEEEecccchhH------HHHHHHHHhcccchhhhccchHH
Confidence 667888999999999954311110 11111 122233333322222333 111111111111 0001111
Q ss_pred ccccccCCccccceeecHHhhhccCCCCCCCccceEecCCCccCCCHHHHHHhhhcCCcc-------cHHH-HHHHHHhH
Q 001570 358 RNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAY-------EIAS-TIQAICKL 429 (1051)
Q Consensus 358 ~~~~~~~~~~~~~LyLd~~Tq~ell~~~~~~sLl~v~l~~t~t~mg~r~LR~llL~P~~~-------sl~~-~I~~r~t~ 429 (1051)
.+........++..|+|...-.+...+ -.+... -...+|-|+..++|++.++|.++ +|.. .+++|.|+
T Consensus 250 ~~q~a~~~~~~~i~yl~~~~e~~~s~~---~ei~~~-~~~~~m~ld~~av~alnlf~~~~~~~~~s~~L~~~~LN~c~t~ 325 (902)
T KOG0219|consen 250 ELQLAMSALSALIKYLDLENEYSNSGK---YELTNH-GLHQFMRLDSAAVRALNLFPLPYNNPEKSNNLALSLLNHCKTL 325 (902)
T ss_pred HhHHHHHHHHHHHHHHhhcccccccce---EEEeec-chHHHhhHHHHHHHHHhhcCCCCCCccccchhhHHHHhhcccc
Confidence 000000000111125522221111111 122222 44567999999999999999982 5554 79999999
Q ss_pred hhhhhcCCCcHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhhcChHHHHHHHh-ccCchhhcccchhhHHHhhhHhHHHH
Q 001570 430 MSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILEL-LMDPTWVATGLKIDFETLVEECRLAS 508 (1051)
Q Consensus 430 mg~~l~~i~dlerL~~~L~~p~a~~~dl~~I~~rL~aV~~l~~~~~l~~~L~~-~l~~~~~~~g~~~dlerl~~~~~~~~ 508 (1051)
+|. ++|..|+.+| +++...|.+|++.|..+.++.+++..|+. +|...+ |+-|+..++. .
T Consensus 326 ~G~--------rll~~w~~qp---L~~~~ri~~r~d~v~~l~~~~~~rq~L~~~lL~~~p-------di~rl~~~l~--~ 385 (902)
T KOG0219|consen 326 QGE--------RLLRQWLKQP---LRDIDRINERHDLVEALVEDAEIRQKLRDDLLRRIP-------DISRLARRLM--K 385 (902)
T ss_pred cch--------hhhhhhhhcc---hHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhhcCh-------hHHHhhhhhh--h
Confidence 999 9999999999 99999999999999999999999998884 444433 7777777755 4
Q ss_pred HHHHHhhhcc----------------CC--chhhhccC-CCCCh--hHHhhcch-------hhhhhhhhcccchhHHHHH
Q 001570 509 VRIGEMISLD----------------GE--SDQKICSY-DNIPS--EFFEDMES-------TWKGRVKRIHIEPEIAEVE 560 (1051)
Q Consensus 509 ~~i~~~i~l~----------------~e--~p~~~~~~-~~I~~--~f~~~lds-------~~~g~V~~~~~~e~l~elr 560 (1051)
+++.++..+- .+ .....+.+ ....+ .|.+.++. .-..++-|.-+.+++.+++
T Consensus 386 ~~L~d~~r~yq~~~~l~~~~~~l~~~~~~~~~ll~~~l~~~~~~~~kf~~~ve~t~D~da~ee~ey~VR~eFdeeL~eLr 465 (902)
T KOG0219|consen 386 ANLQDVNRIYQAAKLLPTVVQVLISLSESHNRLLKSPLTEHLKKLEKFQEMVETTVDLDAEEENEYRVRVDFDEELQELR 465 (902)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhhHhHHhcCcEEEecccCHHHHHHH
Confidence 4444433310 00 00000100 00000 12222111 0134455566778888888
Q ss_pred HHHHHHHHhhccCchhHHhhhhccccCCCCCchhhhhhhcccceeecccccccccccCCCCccccccccccccccCcccc
Q 001570 561 MAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVG 640 (1051)
Q Consensus 561 ~l~~~L~~aI~ed~lpi~~re~~~ir~tgg~~~eI~y~~~~~~~~l~Gy~ieV~v~~~~~~~~~I~~l~~~~~~~g~~v~ 640 (1051)
+..+.++..+-+.......... .-+...+++....-+ |+++.++.... .-+. -...|+-.....+
T Consensus 466 q~LdeL~~~m~~~hkrv~~dl~----~D~~kklkLe~~~~~------G~~~RlTr~e~----~~LR-~~k~y~eLstqK~ 530 (902)
T KOG0219|consen 466 EKLDELERKMEKLHKKVSADLG----LDPKKQLKLENSAQF------GWYFRVTRKEE----KVLR-KKKNYTELSTQKG 530 (902)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC----CCcccceeeeccchh------heeeeeeehhh----hHhh-ccCCceEEEEeeC
Confidence 8888877776554422211111 112334455555555 77777743221 1111 1122332333344
Q ss_pred ceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--ccccccCccccc
Q 001570 641 EEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGR--RRKWVFPALKDI 718 (1051)
Q Consensus 641 ~e~f~t~eL~ea~er~~~ae~~a~e~i~eiL~eL~~~L~~~~~~L~~l~~lla~Adal~~~a~~a~--~~~~~~P~~~~~ 718 (1051)
.-+|+|.+|...++.+.....+..+...++.+++......|.+.|..+...++.+|+..++|+.|. --+|+||.+.+.
T Consensus 531 GV~FTtk~L~slN~e~~~~qk~Y~~~Q~~ivrevikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~ 610 (902)
T KOG0219|consen 531 GVKFTTKKLSSLNDEFMSLQKEYDEAQNEIVREIIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPL 610 (902)
T ss_pred cEEEEhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCcccccc
Confidence 557999999999999998888888888888999999999999999999999999999988888776 679999999875
Q ss_pred ccccccceeecccCCccccc-CCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhh
Q 001570 719 ELDGANCLKMNGLSPYWFDA-AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPY 793 (1051)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~-~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~ 793 (1051)
|...+.++.-+|+++.. +.-.+++|++.+ +++.+||||||+||||++|+.+-+.+|||+|+|||++.+.+++
T Consensus 611 ---gs~rl~l~~~rHp~lE~Qd~~~fIpNdv~le~~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~I 687 (902)
T KOG0219|consen 611 ---GSKRLELKQSRHPVLEGQDEIPFIPNDVVLEKGKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISI 687 (902)
T ss_pred ---chhHHHHHhcccchhhccccCCCCCCccccccCCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCch
Confidence 32234444333333322 233589999999 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCcEEEEeccC
Q 001570 794 FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHL 872 (1051)
Q Consensus 794 ~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~-~g~~vi~~TH~ 872 (1051)
+|.|+.++|..|+..++.||||.+|-..+.|++.+++.+|||+|||++||.+.+|-.++|++-+++.. .||..||+||+
T Consensus 688 vD~Il~RVGA~D~q~kG~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHf 767 (902)
T KOG0219|consen 688 VDGILTRVGAGDSQLKGISTFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHF 767 (902)
T ss_pred hhHHHhhhccchhhhcchHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999865 58999999999
Q ss_pred hhhhhCcccccccccceeEEEEeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhcccchh
Q 001570 873 HGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCVM 945 (1051)
Q Consensus 873 ~el~~l~~~~~~i~~~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~vi~rA~~~~~~~~~~~~~ 945 (1051)
|++..+....+.+.+.||.+...++++.-+|++.+|.|+.|||+++|+++|+|+.||+-|+..+..++...+.
T Consensus 768 hElt~lae~~~~vKn~h~~a~i~~~~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~~~ 840 (902)
T KOG0219|consen 768 HELTKLAEQLPTVKNLHVTAQIENDDITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELEDELVI 840 (902)
T ss_pred HHHHhhhhhhhhhhhheeeeEecCcchhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999889999999999999999999999999999999999999999998765443
No 7
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=7.4e-50 Score=494.62 Aligned_cols=481 Identities=22% Similarity=0.285 Sum_probs=378.7
Q ss_pred eEecCCCccCCCHHHHHHhhhcCCcccHHHHHHHHHhHhhhh-----------hcCCCcHHHHHHHHhcCC-CCcccHHH
Q 001570 392 KVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV-----------TCSIPEFTCLVKLLELRE-ANHIEFCR 459 (1051)
Q Consensus 392 ~v~l~~t~t~mg~r~LR~llL~P~~~sl~~~I~~r~t~mg~~-----------l~~i~dlerL~~~L~~p~-a~~~dl~~ 459 (1051)
..+.+.|.|+||.+.+++ +.|.. +.. .|+++++.+..+ +.+++|++++..++..+. .++.|+..
T Consensus 16 ~~l~~~~~t~~Gk~~l~~--l~P~~-~~~-~i~~~l~~~~e~~~~~~~~~~~~l~~~~Di~~~l~r~~~g~~l~~~eL~~ 91 (782)
T PRK00409 16 EQLKTFAASELGKEKVLQ--LDPET-DFE-EVEELLEETDEAAKLLRLKGLPPFEGVKDIDDALKRAEKGGVLSGDELLE 91 (782)
T ss_pred HHHHhHcCCHHHHHHHHc--CCCCC-CHH-HHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHhCCCCCCHHHHHH
Confidence 334567899999999999 57877 777 888888887754 889999999999999754 88999999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHhc-c-CchhhcccchhhHHHhhhHhHHHHHHHHHhhhccCCchhhhccCCCCChhHHh
Q 001570 460 IKNVLDEILHMYGNSELNEILELL-M-DPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFE 537 (1051)
Q Consensus 460 I~~rL~aV~~l~~~~~l~~~L~~~-l-~~~~~~~g~~~dlerl~~~~~~~~~~i~~~i~l~~e~p~~~~~~~~I~~~f~~ 537 (1051)
|...+..+ ..++..+... . ...+ .+.++-..+..+......|..++. ..+.|.++++.
T Consensus 92 i~~~l~~~------~~l~~~l~~~~~~~~~~----~L~~~~~~l~~~~~l~~~i~~~id----------~~g~i~d~aS~ 151 (782)
T PRK00409 92 IAKTLRYF------RQLKRFIEDLEEEEELP----ILEEWVAKIRTLPELEQEIHNCID----------EEGEVKDSASE 151 (782)
T ss_pred HHHHHHHH------HHHHHHHHhcccccchh----HHHHHHHcCcCcHHHHHHHHHHhC----------CCCEECCCCCH
Confidence 99999999 6666666532 0 0001 111222222233444445555554 34678888888
Q ss_pred hcchhhhhhhhhcccchhHHHHHHHHHHHHHhhccCchhHHhhhhccccCCCCCchhhhhhhcccceeeccccccccccc
Q 001570 538 DMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWA 617 (1051)
Q Consensus 538 ~lds~~~g~V~~~~~~e~l~elr~l~~~L~~aI~ed~lpi~~re~~~ir~tgg~~~eI~y~~~~~~~~l~Gy~ieV~v~~ 617 (1051)
+|+ .+|...+.+...|.+..-.+.... +. . .|... ..++.++.++.+++..
T Consensus 152 eL~-----------------~iR~~~~~~~~~i~~~l~~~~~~~-------~~-~---~~L~d-~~it~r~~r~~i~vk~ 202 (782)
T PRK00409 152 KLR-----------------GIRRQLRRKKSRIREKLESIIRSK-------SL-Q---KYLQD-TIITIRNDRYVLPVKA 202 (782)
T ss_pred HHH-----------------HHHHHHHHHHHHHHHHHHHHHHhc-------cc-c---ccccc-ceEEEECCEEEEEech
Confidence 887 556555554444432221111111 00 0 01111 1122333344444443
Q ss_pred CCCCccccccccccccccCccccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001570 618 STPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKA 697 (1051)
Q Consensus 618 ~~~~~~~I~~l~~~~~~~g~~v~~e~f~t~eL~ea~er~~~ae~~a~e~i~eiL~eL~~~L~~~~~~L~~l~~lla~Ada 697 (1051)
..+..+|+++++++..|.++|.+| ..+.++++++.+++.++.+++.+++.+++..+..+...|..+...++..|+
T Consensus 203 --~~~~~~~g~v~~~s~sg~t~y~ep---~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~lD~ 277 (782)
T PRK00409 203 --EYKHAIKGIVHDQSSSGATLYIEP---QSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDELDF 277 (782)
T ss_pred --hhhccCCCceeeEECCCCEEEEEc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578899999999988775443 248888899999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccccccccCcccccccccccceeecccCCcccccCCCceeeeeEee---ceEEEEEcCCCCCcchHHHHHHhh
Q 001570 698 LFAHVSEGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAA 774 (1051)
Q Consensus 698 l~~~a~~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~isl---g~i~~ItGpNGsGKSTLLk~I~gl 774 (1051)
++|+|..|...+||+|.+++. ..+.+.+.+|+++ ....+|+||+++ +++++|||||||||||+||+|+++
T Consensus 278 l~a~a~~a~~~~~~~P~~~~~-----~~i~l~~~rHPll--~~~~~Vpndi~l~~~~~~~iITGpN~gGKTt~lktigl~ 350 (782)
T PRK00409 278 IFARARYAKALKATFPLFNDE-----GKIDLRQARHPLL--DGEKVVPKDISLGFDKTVLVITGPNTGGKTVTLKTLGLA 350 (782)
T ss_pred HHHHHHHHHHCCCccceEcCC-----CcEEEcCcCCcee--ccCceECceeEECCCceEEEEECCCCCCcHHHHHHHHHH
Confidence 999999999999999999863 3455555544443 235699999999 368999999999999999999999
Q ss_pred HHhhhcceeecCCC-CChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 001570 775 SLLGICGLMVPAES-ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAG 853 (1051)
Q Consensus 775 ~~la~~G~~vpa~~-~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~ 853 (1051)
++|+|+|++||+.. +.++++|+||.++|..+++..+.|+||.+|+++..++..+++|+|+||||||+||||.++.+++.
T Consensus 351 ~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~ 430 (782)
T PRK00409 351 ALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAI 430 (782)
T ss_pred HHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHH
Confidence 99999999999985 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcEEEEeccChhhhhCcccccccccceeEEEEeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHH
Q 001570 854 SIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAE 933 (1051)
Q Consensus 854 ~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~vi~rA~ 933 (1051)
++++++.+.|+++|++||+++++........+.+++|.+ +.+++.|+|++..|.+++|||+++|+++|+|++||++|+
T Consensus 431 aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~--d~~~l~~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~ 508 (782)
T PRK00409 431 SILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEF--DEETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIEEAK 508 (782)
T ss_pred HHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEE--ecCcCcEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHH
Confidence 999999888999999999999998877777888888765 457899999999999999999999999999999999999
Q ss_pred HHHHHh
Q 001570 934 DLYIAC 939 (1051)
Q Consensus 934 ~~~~~~ 939 (1051)
+++..-
T Consensus 509 ~~~~~~ 514 (782)
T PRK00409 509 KLIGED 514 (782)
T ss_pred HHHhhh
Confidence 998764
No 8
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=2.3e-46 Score=462.31 Aligned_cols=478 Identities=22% Similarity=0.281 Sum_probs=371.3
Q ss_pred ecCCCccCCCHHHHHHhhhcCCcccHHHHHHHHHhHhhhh--------hcCCCcHHHHHHHHhcCC-CCccc-HHHHHHH
Q 001570 394 LLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV--------TCSIPEFTCLVKLLELRE-ANHIE-FCRIKNV 463 (1051)
Q Consensus 394 ~l~~t~t~mg~r~LR~llL~P~~~sl~~~I~~r~t~mg~~--------l~~i~dlerL~~~L~~p~-a~~~d-l~~I~~r 463 (1051)
+.+.|.|++|.+.+++ +.|.. +.. .|+++++.+..+ +.+++|++++..++..+. .++.+ +..|...
T Consensus 18 l~~~~~t~~gk~~~~~--l~P~~-~~~-~i~~~l~~~~e~~~~~~~~~l~~~~di~~~l~r~~~g~~l~~~e~l~~i~~~ 93 (771)
T TIGR01069 18 LLKQTFTPLGKEDAIG--LKPPK-SVE-ESKEIIIKLTALGSIENNVRFFGFEDIRELLKRAELGGIVKGLEYILVIQNA 93 (771)
T ss_pred HHHHcCCHHHHHHHhc--CCCCC-CHH-HHHHHHHHHHHHHHhhccCCcCCCccHHHHHHHHhcCCcCChHHHHHHHHHH
Confidence 3567899999999999 57776 665 777777776654 678899999999999766 67767 9999999
Q ss_pred HHHHHHhhcChHHHHHHHhccCchhhcccchhhHHHhhhHhHHHHHHHHHhhhccCCchhhhccCCCCChhHHhhcchhh
Q 001570 464 LDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTW 543 (1051)
Q Consensus 464 L~aV~~l~~~~~l~~~L~~~l~~~~~~~g~~~dlerl~~~~~~~~~~i~~~i~l~~e~p~~~~~~~~I~~~f~~~lds~~ 543 (1051)
+..+ ..++..+... ...+ .+.++-..+..+......|..++. ..+.|.++++.+|+
T Consensus 94 l~~~------~~l~~~l~~~-~~~~----~L~~~~~~l~~~~~l~~~i~~~id----------~~g~i~d~aS~~L~--- 149 (771)
T TIGR01069 94 LKTV------KHLKVLSEHV-LDLE----ILFHLRLNLITLPPLENDIIACID----------DDGKVKDGASEELD--- 149 (771)
T ss_pred HHHH------HHHHHHHhcc-ccch----HHHHHHhcCCCcHHHHHHHHHHhC----------CCCEECCCcCHHHH---
Confidence 9998 5555555432 1101 111111112223333344444443 35677788777776
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHHhhccCchhHHhhhhccccCCCCCchhhhhhhcccceeecccccccccccCCCCcc
Q 001570 544 KGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEE 623 (1051)
Q Consensus 544 ~g~V~~~~~~e~l~elr~l~~~L~~aI~ed~lpi~~re~~~ir~tgg~~~eI~y~~~~~~~~l~Gy~ieV~v~~~~~~~~ 623 (1051)
++|.-...+...+.+.. ..+++..+ .-.|... ..+.+++.++.+++... .+.
T Consensus 150 --------------~ir~~~~~~~~~i~~~l-------~~~~~~~~----~~~~l~~-~~it~r~~r~vipvk~~--~~~ 201 (771)
T TIGR01069 150 --------------AIRESLKALEEEVVKRL-------HKIIRSKE----LAKYLSD-TIVTIRNGRYVLPLKSG--FKG 201 (771)
T ss_pred --------------HHHHHHHHHHHHHHHHH-------HHHHHhhc----hhhhhcC-ceEEEECCEEEEEeeHH--Hhh
Confidence 44444444333332221 01111000 0012221 12333444555555543 456
Q ss_pred ccccccccccccCccccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001570 624 QIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVS 703 (1051)
Q Consensus 624 ~I~~l~~~~~~~g~~v~~e~f~t~eL~ea~er~~~ae~~a~e~i~eiL~eL~~~L~~~~~~L~~l~~lla~Adal~~~a~ 703 (1051)
.+++++++++..|.++|.+| .++.++++++.+++.++.+++..++.+++..+..+.+.|......++..|++++.|.
T Consensus 202 ~i~g~v~~~S~sg~t~~~ep---~~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~ 278 (771)
T TIGR01069 202 KIKGIVHDTSSSGETFYIEP---QAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQARAR 278 (771)
T ss_pred cCCCeEEEEeCCCCEEEEEc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999888775443 248888889999999999999999999999999999999999999999999999999
Q ss_pred hccccccccCcccccccccccceeecccCCcccccCCCceeeeeEeec---eEEEEEcCCCCCcchHHHHHHhhHHhhhc
Q 001570 704 EGRRRKWVFPALKDIELDGANCLKMNGLSPYWFDAAEGSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASLLGIC 780 (1051)
Q Consensus 704 ~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~islg---~i~~ItGpNGsGKSTLLk~I~gl~~la~~ 780 (1051)
.|...+||+|.+.+. ..+.+.+.+|+.+ ....+|+++++++ ++++||||||+|||||||+|+|+.+|++.
T Consensus 279 ~a~~~~~~~P~~~~~-----~~i~l~~~rhPll--~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~ 351 (771)
T TIGR01069 279 YAKAVKGEFPMPSFT-----GKIILENARHPLL--KEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQS 351 (771)
T ss_pred HHHHCCCeeceecCC-----CCEEEccccCcee--cCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHh
Confidence 999999999998763 2466665554443 2345999999993 79999999999999999999999999999
Q ss_pred ceeecCCC-CChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 001570 781 GLMVPAES-ASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 859 (1051)
Q Consensus 781 G~~vpa~~-~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L 859 (1051)
|++||+.. ..++++|+++..++..+++..+.|+|+.+|+++..++..+++|+|||||||++||||.++.++++++++++
T Consensus 352 G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l 431 (771)
T TIGR01069 352 GIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYL 431 (771)
T ss_pred CCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999976 67999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEeccChhhhhCcccccccccceeEEEEeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 001570 860 DNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIAC 939 (1051)
Q Consensus 860 ~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~vi~rA~~~~~~~ 939 (1051)
.+.|+++|++||++++..+.....++.+.+|.++ .+++.|+|++.+|.++.|||+++|+++|+|++||++|++++...
T Consensus 432 ~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d--~~~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~ 509 (771)
T TIGR01069 432 LKQNAQVLITTHYKELKALMYNNEGVENASVLFD--EETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFYGEF 509 (771)
T ss_pred HhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEc--CCCCceEEEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhh
Confidence 9899999999999999888777788888888654 47899999999999999999999999999999999999998775
No 9
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-43 Score=406.62 Aligned_cols=529 Identities=18% Similarity=0.215 Sum_probs=388.8
Q ss_pred ccCCCC---CCCccceEecCCCccCCCHHHHHHhhhcCCcccHHHHHHHHHhHhhhh-------------hcCCCcHHHH
Q 001570 380 GAIPTE---GIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV-------------TCSIPEFTCL 443 (1051)
Q Consensus 380 ell~~~---~~~sLl~v~l~~t~t~mg~r~LR~llL~P~~~sl~~~I~~r~t~mg~~-------------l~~i~dlerL 443 (1051)
++++++ +..+++.+ ++.|.|++|.|+||+-.+.|+. +.. .|+-|+.+++.+ ++..+|+.++
T Consensus 270 elV~~~~~kn~~~l~~v-l~~T~t~~g~r~lRssilqpl~-d~~-ti~~rleaiqeL~a~~~L~~~Lr~~~k~~~dld~~ 346 (867)
T KOG0220|consen 270 ELVINNQYKNNHTLFGV-LNYTKTPGGYRRLRSSILQPLT-DIE-TINMRLEAIQELLADEELFFGLRSVIKRFLDLDQL 346 (867)
T ss_pred EEechhhhhcccceeee-eeeeecccchhhHHhhhccccc-chh-hhhHHHHHHHHHhcCchHhhhhHHHHhhhhhHHHH
Confidence 667662 23488888 9999999999999999999999 887 899999988876 6667777775
Q ss_pred HHHHhc---------CCCCcccHHHHHHHHHHHHHhhcChHHHHHHHhccCchhhcccchhhHHH--hhhHhHHHHHHHH
Q 001570 444 VKLLEL---------REANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFET--LVEECRLASVRIG 512 (1051)
Q Consensus 444 ~~~L~~---------p~a~~~dl~~I~~rL~aV~~l~~~~~l~~~L~~~l~~~~~~~g~~~dler--l~~~~~~~~~~i~ 512 (1051)
.+.+.+ +++--.....++..|..| ..++..+...... +...... ...+...+...+.
T Consensus 347 ~s~~~~~~~~~~i~~~~s~I~~~~~Lk~tL~lv------~~~~~al~~~~s~------~~~e~~~~~~~~r~~~i~~~i~ 414 (867)
T KOG0220|consen 347 LSVLVQIPTQDTVNAAESKINNLIYLKHTLELV------DPLKIALKNCNSN------LLREYYGSFKDKRFGIILEKIK 414 (867)
T ss_pred HHHHHhhhhHHhhhcchhHHHHHHHHHHHHHHH------HHHHHHHhhchhH------HHHHHHHHhcchHHHHHHHHHH
Confidence 544333 333333344455555555 2222222222110 0000000 0112222223333
Q ss_pred HhhhccCCchhhhccCCCCChhHHhhcchhh-hhhhhhcccchhHHHHHHHHHHHHHhhccCchhHHhhhhccccCCCCC
Q 001570 513 EMISLDGESDQKICSYDNIPSEFFEDMESTW-KGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGP 591 (1051)
Q Consensus 513 ~~i~l~~e~p~~~~~~~~I~~~f~~~lds~~-~g~V~~~~~~e~l~elr~l~~~L~~aI~ed~lpi~~re~~~ir~tgg~ 591 (1051)
++|. +... ..+..+ .+.=+-+++......+-++++.....+.++...++...++ + +..
T Consensus 415 e~I~----------------dd~l-~a~~~l~~~~qkcyAvks~i~~~LDiaR~ty~ei~~~~~~~i~~l~E---~-~~~ 473 (867)
T KOG0220|consen 415 EVIN----------------DDAL-YAKGCLNLRTQKCYAVKSNINGFLDIARRTYTEIVDDIAGMISQLGE---K-FSL 473 (867)
T ss_pred HHhh----------------HHHH-hccchhhhhccceeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHh---h-cCc
Confidence 3332 1111 111111 1111334555555556666666666666665454444444 2 244
Q ss_pred chhhhhhhcccceeecccccccccccCCCCccccccccccccccCccccceeeehHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001570 592 KGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELL 671 (1051)
Q Consensus 592 ~~eI~y~~~~~~~~l~Gy~ieV~v~~~~~~~~~I~~l~~~~~~~g~~v~~e~f~t~eL~ea~er~~~ae~~a~e~i~eiL 671 (1051)
++...|+... |++|.++-.--......+|. .+...........|++..+.+.++|+++...+++-.-..++
T Consensus 474 nl~~~f~sar------GF~~ri~~~~~~~~~~~lP~---~fi~~~~~~~~~~~~s~~~ik~N~Rlk~~~~E~~l~te~~v 544 (867)
T KOG0220|consen 474 NLRLSFSSAR------GFFIRITTDCIALPSDTLPS---EFIKISKVKNSYSFTSADLIKMNERLKEVLREIFLMTEMIV 544 (867)
T ss_pred cccccccccc------cEEEEeeccccccccccCch---hhhhhhhhcceeeechHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655 76666531100112234444 22222222334458899999999999999999999888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCccccc--ccccccceeecccCCcccccCCCceeeeeEe
Q 001570 672 RGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDI--ELDGANCLKMNGLSPYWFDAAEGSAVHNTVD 749 (1051)
Q Consensus 672 ~eL~~~L~~~~~~L~~l~~lla~Adal~~~a~~a~~~~~~~P~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vl~~is 749 (1051)
.++.+++..++..+..++..++..|.+++++..+...+|++|++++. |.+||||+.. ....++++-|+..
T Consensus 545 ~~lld~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~~~y~~P~fT~slaI~qGRHPILe--------~i~~ek~i~N~t~ 616 (867)
T KOG0220|consen 545 CKLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTLSDYVRPEFTDSLAIKQGRHPILE--------KISAEKPIANNTY 616 (867)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCceeeccCCCchhh--------hhcccCcccCcce
Confidence 99999999999999999999999999999999999999999999997 6777777642 1234567777777
Q ss_pred e---ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHH
Q 001570 750 M---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVT 826 (1051)
Q Consensus 750 l---g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~ 826 (1051)
+ .++.+|||||||||||+||++|.+.+|||+|+||||.++.+|+|++||++||-.|++....|+|+.||++.+.|+.
T Consensus 617 ~t~~s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IPA~YaS~pIf~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq 696 (867)
T KOG0220|consen 617 VTEGSNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVPAEYASFRVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQ 696 (867)
T ss_pred eecccceEEEECCCCCcchHHHHHHHHHHHHHHhccCcchhhccchHHHHHHHHhcCchhhhhchhHHHHHHHHHHHHHH
Confidence 7 4799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeEEEEeCCceee-eeee
Q 001570 827 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVP-TWKL 905 (1051)
Q Consensus 827 ~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~~~~~~~~l~~-~y~l 905 (1051)
.+.+.+||+|||.++||...+|.+|.+++.|++.+..+.++++||+.++++++...+.+.++|+..+..++...+ .|+|
T Consensus 697 ~a~~~SLiVlDELgR~TSteeGiaityAvCE~lL~LkayTflATHFldIa~lan~~paVdnlHF~~q~~eNssk~~k~kL 776 (867)
T KOG0220|consen 697 NANKNSLIVLDELGRGTSTEEGIAITYAVCEYLLSLKAYTFLATHFLDIAAIANYYPAVDNLHFLVQTDENSSKNKKYKL 776 (867)
T ss_pred hCCcCcEEEEhhhccCCccccchhhHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcCccccceeeeeeecccchhhhhhhh
Confidence 999999999999999999999999999999999998999999999999999999999999999999888777665 6999
Q ss_pred ecCCCC-CcHHHHHHHHcCCCHHHHHHHHHHHHHhcccchhhccccCCCCcccCcceeEE
Q 001570 906 VDGICR-ESLAFETAKREGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYV 964 (1051)
Q Consensus 906 ~~G~~~-~s~ai~vA~~~Glp~~vi~rA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 964 (1051)
..|... .-||+++|+..-+|.+|++.|+.+..++..+. ...+...|+...+-.||.
T Consensus 777 srg~~~~~~yG~~~vE~s~iPd~i~e~a~~~~t~i~A~v---~~~~rd~~~~~rq~~Vy~ 833 (867)
T KOG0220|consen 777 SRGLTEEKNYGLKAAEVSSLPDSIVEDAKEITTQITAQI---LQNQRDTPEMERQRAVYH 833 (867)
T ss_pred hhhhhhcccccceEEEEecCCHHHHHhhhHHHHHHHHHH---HhhccCchHHHHHHHHHH
Confidence 888754 57999999999999999999999998876542 223334555555555554
No 10
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=4.1e-40 Score=371.21 Aligned_cols=511 Identities=18% Similarity=0.233 Sum_probs=376.8
Q ss_pred eeecHHhhh--ccCCCC-----------CCCccceEecCCCccCCCHHHHHHhhhcCCcccHHHHHHHHHhHhhhh----
Q 001570 371 LHLGTATQI--GAIPTE-----------GIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV---- 433 (1051)
Q Consensus 371 LyLd~~Tq~--ell~~~-----------~~~sLl~v~l~~t~t~mg~r~LR~llL~P~~~sl~~~I~~r~t~mg~~---- 433 (1051)
+-+|..|.. .++|+. +..|+++. +++|..--|.+.||.|..+|+. ++. .|..|++.+..|
T Consensus 237 v~iD~nTisaL~Ifp~e~~~~~~k~~~~~g~Slf~l-~n~c~s~~g~k~Lr~Wf~nPtt-d~~-~l~sR~~~i~~fl~~q 313 (849)
T KOG0221|consen 237 VNIDQNTISALQIFPSESHPSKVKSGLKEGLSLFGL-LNRCHSKWGEKLLRLWFTNPTT-DLG-ELSSRLDVIQFFLLPQ 313 (849)
T ss_pred eeeccchHHHHHhcccccccchhhhhhhcchhHHHH-HHHHhhHHHHHHHHHHhcCCCC-cHH-HHHHHHHHHHHHhcch
Confidence 477777765 444441 22388888 9999999999999999999999 887 888888888776
Q ss_pred -----------hcCCCcHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhhcChHHHHHHHhccCchhhcccchhhHH-Hhh
Q 001570 434 -----------TCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFE-TLV 501 (1051)
Q Consensus 434 -----------l~~i~dlerL~~~L~~p~a~~~dl~~I~~rL~aV~~l~~~~~l~~~L~~~l~~~~~~~g~~~dle-rl~ 501 (1051)
++.|||+-.+.+++..+++.+.+-..+...+.+. -.+++.++.+.-... +..|.+ .++
T Consensus 314 Na~~~~~Ls~~lgr~k~~~~~~~~~~sg~t~l~~W~~~~stv~~~------~~i~~~~rslp~s~~----~~~~~~~~~~ 383 (849)
T KOG0221|consen 314 NADMAQMLSRLLGRIKNVPLILKRMKSGHTKLSDWQVLYSTVYSA------LGIRDACRSLPQSIQ----LFRDIAQEFS 383 (849)
T ss_pred hhHHHHHHHHHHhhcccHHHHHHHHhcCCceechHHHHHHHHHHH------HHHHHHHHhCccchh----hhhHHHHHHH
Confidence 8899999999999999999999999999988888 777777776543321 222332 345
Q ss_pred hHhHHHHHHHHHhhhccCCchhhhccC-CCCChhHHhhcchhhhhhhhhcccchhHHHHHHHHHHHHHhhccCch-hHHh
Q 001570 502 EECRLASVRIGEMISLDGESDQKICSY-DNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFL-PIIS 579 (1051)
Q Consensus 502 ~~~~~~~~~i~~~i~l~~e~p~~~~~~-~~I~~~f~~~lds~~~g~V~~~~~~e~l~elr~l~~~L~~aI~ed~l-pi~~ 579 (1051)
+.++++...+..+|..+ + +..++ -.+-+|.++++| |.|.....+ +-++ .+-.
T Consensus 384 ~~l~eia~~~g~vIdF~-~---S~~~~r~Tv~~giD~elD-----------------E~r~~y~~l-----p~~Lt~vAr 437 (849)
T KOG0221|consen 384 DDLHEIASLIGKVIDFE-G---SLAENRFTVLPGIDPELD-----------------EKRRRYMGL-----PSFLTEVAR 437 (849)
T ss_pred HHHHHHHHHhhheeccc-c---ccccceEEecCCCChHHH-----------------HHHHHHccc-----hHHHHHHHH
Confidence 55666666666666531 1 11111 223345555555 777777773 2222 2222
Q ss_pred hhhccccCCC--CCchhhhhhhcccceeecccccccccccCCCCcccccccccc--ccccCccccceeeehHHHHHHHHH
Q 001570 580 RIKATTAPLG--GPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPA--VDSKGRKVGEEWFSTLKVEEALER 655 (1051)
Q Consensus 580 re~~~ir~tg--g~~~eI~y~~~~~~~~l~Gy~ieV~v~~~~~~~~~I~~l~~~--~~~~g~~v~~e~f~t~eL~ea~er 655 (1051)
++.+ .++ +++.-.-|..-. ||-..++.-- .......+...-. +....+ -+|.+.+.+++.+.
T Consensus 438 ~e~~---~L~~~~psv~~VYIPli------Gfllsiprl~-~~~~~~d~~~~~~~mf~s~E~----l~~rnart~eLD~~ 503 (849)
T KOG0221|consen 438 KELE---NLDSRIPSVSVVYIPLI------GFLLSIPRLP-SMVEASDFENGLDFMFLSEEK----LHYRNARTKELDAL 503 (849)
T ss_pred HHHH---hhCCCCCceeEEEeece------eeEEeccccc-chhhcCCcccchHHHhcccce----eEeecccHHhHHHH
Confidence 2222 222 233222333332 6544443211 0111222221111 111111 23666667776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCccccc-----ccccccceeecc
Q 001570 656 YHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDI-----ELDGANCLKMNG 730 (1051)
Q Consensus 656 ~~~ae~~a~e~i~eiL~eL~~~L~~~~~~L~~l~~lla~Adal~~~a~~a~~~~~~~P~~~~~-----~~~~~~~~~~~~ 730 (1051)
+-...-++.+....++-++-.++......|...-.+.+.+|+++++|..|..+||++|.++++ +..|||++.
T Consensus 504 ~GDIy~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~~gy~~P~lv~e~~il~I~ngrh~l~--- 580 (849)
T KOG0221|consen 504 LGDIYCEIRDQETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAADYGYSRPRLVPEVLILRIQNGRHPLM--- 580 (849)
T ss_pred hhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccHHHHHHHHcCChhHH---
Confidence 766666666666677777777777777777777778889999999999999999999999986 344555433
Q ss_pred cCCcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCC
Q 001570 731 LSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDS 806 (1051)
Q Consensus 731 ~~~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~ 806 (1051)
....+.+|||+... |++.+|||||.||||.++|+++.++.++++|+||||+.+.++.+|+|+++++..++
T Consensus 581 ------e~~~dtfvPNst~iggdkgri~vITGpNasGKSiYlkqvglivfLahIGsFVPAe~A~IGivDrI~tri~s~es 654 (849)
T KOG0221|consen 581 ------ELCADTFVPNSTEIGGDKGRIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVPAEEAEIGIVDRIFTRIHSCES 654 (849)
T ss_pred ------HHHHHhcCCCceeecCCCceEEEEeCCCCCCceEEEeechhhhHHHhhccccchhhhhcchHHHHHHHhhhhhh
Confidence 23346799999998 58999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccchhHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCC---cEEEEeccChhhhhCccccc
Q 001570 807 PADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG---CLGIVSTHLHGIFSLPLKIK 883 (1051)
Q Consensus 807 ~~~~~stfs~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g---~~vi~~TH~~el~~l~~~~~ 883 (1051)
...+.|||+.+..|++.+++.|+..||+|+||.+.||++.+|..+..+++.++..+| .+|+++||+|++......-.
T Consensus 655 v~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~~rg~~~PrifvcThfheL~ne~~L~~ 734 (849)
T KOG0221|consen 655 VSLGQSTFMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLARGPTCPRIFVCTHFHELVNEQLLPQ 734 (849)
T ss_pred hhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHHhcCCCCCeEEEeccHHHhhhhccCCc
Confidence 999999999999999999999999999999999999999999999999999998766 46999999999986433222
Q ss_pred --ccccceeEEE-EeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhcccc
Q 001570 884 --NAAYKAMGTE-YLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNC 943 (1051)
Q Consensus 884 --~i~~~~~~~~-~~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~vi~rA~~~~~~~~~~~ 943 (1051)
.+.+..|.+. ...+.++|.|++.+|....|+|+.+|+.+|+|+.||.||++++..++.+.
T Consensus 735 n~i~qfltm~vlr~~ge~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~Ra~~v~~ai~sg~ 797 (849)
T KOG0221|consen 735 NPIVQFLTMEVLREDGEDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKEVSDAIRSGK 797 (849)
T ss_pred chhhhhhhHHHHHhccCCeEEEEEeccchhhhcccchhHhhcCCCHHHHHHHHHHHHHHHcCC
Confidence 3445555442 35688999999999999999999999999999999999999999987543
No 11
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=5e-40 Score=355.21 Aligned_cols=226 Identities=36% Similarity=0.545 Sum_probs=188.4
Q ss_pred cccCcccccccccccceeeccc-CCccccc-CCCceeeeeEeec----eEEEEEcCCCCCcchHHHHHHhhHHhhhccee
Q 001570 710 WVFPALKDIELDGANCLKMNGL-SPYWFDA-AEGSAVHNTVDMQ----SLFLLTGPNGGGKSSLLRSICAASLLGICGLM 783 (1051)
Q Consensus 710 ~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~vl~~islg----~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~ 783 (1051)
||+|+++++ ..+.+++. ||+.... .++++|+||+.++ ++++|||||||||||+||+|+.+++|+|+|+|
T Consensus 1 y~~P~~~~~-----~~l~i~~~~HPll~~~~~~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~ 75 (235)
T PF00488_consen 1 YCRPKISEE-----KSLKIKEGRHPLLEEKLENKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCF 75 (235)
T ss_dssp EB-EEEEST-----TEEEEEEE--TTHHHHTTTSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--
T ss_pred CcccEEcCC-----CCEEEEeccCCEEeccccCCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCce
Confidence 899999984 24444433 3333222 3678999999992 58999999999999999999999999999999
Q ss_pred ecCCCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 001570 784 VPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-I 862 (1051)
Q Consensus 784 vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~-~ 862 (1051)
|||+.+.++.+|.|+++++..|++..+.|+|+.||+++..++..+++.+|||+||+++||++.+|.+++++++++|.+ .
T Consensus 76 VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~ 155 (235)
T PF00488_consen 76 VPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKS 155 (235)
T ss_dssp BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTT
T ss_pred eeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred CcEEEEeccChhhhhCcccccccccceeEEEEeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 001570 863 GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACG 940 (1051)
Q Consensus 863 g~~vi~~TH~~el~~l~~~~~~i~~~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~vi~rA~~~~~~~~ 940 (1051)
++.+|++||+++++++.....++.+.+|.+...++++.++|++.+|.+..|||+++|+++|+|++||+||++++.+++
T Consensus 156 ~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~f~Ykl~~G~~~~S~ai~iA~~~g~p~~II~rA~~i~~~l~ 233 (235)
T PF00488_consen 156 GCFVIIATHFHELAELLERNPNVQNYHMEVEEDNDSLTFTYKLKEGICSSSYAIEIAKLAGLPEEIIERAKEILKQLE 233 (235)
T ss_dssp T-EEEEEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEES--SSTCHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred cccEEEEeccchhHHHhhhCccccccceeeeeeccccceeEEEeECCCCCcHHHHHHHHhCcCHHHHHHHHHHHHHHh
Confidence 999999999999998877777888999999988999999999999999999999999999999999999999999875
No 12
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=6.2e-37 Score=326.85 Aligned_cols=193 Identities=36% Similarity=0.565 Sum_probs=183.5
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCCccCCccchh
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 815 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs 815 (1051)
++++|+||+++ +++++|+||||+||||++++|+++++|+|+|+|||++.+.++.+|.|+++++..|++..+.|+|+
T Consensus 15 ~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~ 94 (218)
T cd03286 15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFM 94 (218)
T ss_pred CCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHH
Confidence 35799999999 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC-CcEEEEeccChhhhhCcccccccccceeEEEE
Q 001570 816 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY 894 (1051)
Q Consensus 816 ~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~-g~~vi~~TH~~el~~l~~~~~~i~~~~~~~~~ 894 (1051)
.||++++.|++.+++|+|+|||||++|||+.++.+++++++++|.+. ++++|++||+++++......+++.+++|.+..
T Consensus 95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~~~~v~~~~m~~~~ 174 (218)
T cd03286 95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHEHGGVRLGHMACAV 174 (218)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhcCcceEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999886 99999999999999877777889999999876
Q ss_pred eC------CceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHH
Q 001570 895 LD------GQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 932 (1051)
Q Consensus 895 ~~------~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~vi~rA 932 (1051)
.+ +++.|+|++.+|.+++|||+++|+++|+|++||+||
T Consensus 175 ~~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 175 KNESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred eccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 55 789999999999999999999999999999999987
No 13
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.5e-35 Score=318.25 Aligned_cols=200 Identities=31% Similarity=0.488 Sum_probs=187.3
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCCccCCccchh
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 815 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs 815 (1051)
++++++||+++ +++++|+||||||||||+|+|+.+.+|+|+|+|||+..+.++.+++++.+++..++...+.|+|+
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~l~d~~~~~lS~~~ 94 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGASDSQLKGVSTFM 94 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeeccccchhcCcChHH
Confidence 45799999999 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCcEEEEeccChhhhhCcccccccccceeEEEE
Q 001570 816 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY 894 (1051)
Q Consensus 816 ~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~-~g~~vi~~TH~~el~~l~~~~~~i~~~~~~~~~ 894 (1051)
.+|.+++.++..+++|+|+|||||++||++.|+..+++.+++++.+ .|+++|++||++++.++++....+.++++....
T Consensus 95 ~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~ 174 (222)
T cd03285 95 AEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALT 174 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEE
Confidence 9999999999989999999999999999999999999999899875 589999999999999888888888889998776
Q ss_pred eC--CceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 001570 895 LD--GQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIAC 939 (1051)
Q Consensus 895 ~~--~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~vi~rA~~~~~~~ 939 (1051)
.+ +++.|+|++.+|.++.|||+++|+++|+|++|++||+++...+
T Consensus 175 ~~~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~~ 221 (222)
T cd03285 175 DDASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALEL 221 (222)
T ss_pred eCCCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 65 8899999999999999999999999999999999999998775
No 14
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.6e-35 Score=316.76 Aligned_cols=193 Identities=34% Similarity=0.484 Sum_probs=179.1
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCCccCCccchh
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 815 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs 815 (1051)
..++++|++++ |++++|+||||+||||++|+|+++.+++|.|+++|+..+.++++|+|+++++..|++..+.|+|+
T Consensus 16 ~~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~ 95 (222)
T cd03287 16 DKSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFM 95 (222)
T ss_pred CCCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHH
Confidence 35799999999 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC-CcEEEEeccChhhhhCccc-ccccccceeEEE
Q 001570 816 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLK-IKNAAYKAMGTE 893 (1051)
Q Consensus 816 ~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~-g~~vi~~TH~~el~~l~~~-~~~i~~~~~~~~ 893 (1051)
.||++++.++..+++++|+|||||++|||+.++.++++++++++.+. ++++|++||+++++++... ...+.+.+|.+.
T Consensus 96 ~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~~~~~~v~~~~~~~~ 175 (222)
T cd03287 96 VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILRRFEGSIRNYHMSYL 175 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHHhcccCeEEEEEEEE
Confidence 99999999999999999999999999999999999999999999887 8999999999999887654 345778888754
Q ss_pred E--------eCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHH
Q 001570 894 Y--------LDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRA 932 (1051)
Q Consensus 894 ~--------~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~vi~rA 932 (1051)
. .++++.|+|++.+|.++.|||+++|+++|+|++||+||
T Consensus 176 ~~~~~~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 176 ESQKDFETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred EeccccccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 3 34689999999999999999999999999999999997
No 15
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=8.6e-35 Score=311.24 Aligned_cols=211 Identities=35% Similarity=0.492 Sum_probs=193.9
Q ss_pred ccccccceeecccCCcccccCCCceeeeeEee---ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHH
Q 001570 719 ELDGANCLKMNGLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFD 795 (1051)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~~isl---g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d 795 (1051)
+.+++||+..... ....+|+|++++ .++++|+|||||||||+||+|+++.++++.|+++|+..+.+++++
T Consensus 2 i~~~~hp~~~~~~-------~~~~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~ 74 (216)
T cd03284 2 IEGGRHPVVEQVL-------DNEPFVPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVD 74 (216)
T ss_pred cccccCCEEeecc-------CCCceEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceeccee
Confidence 3467777653211 135689999999 479999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccCCccchhHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC-CcEEEEeccChh
Q 001570 796 AIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHG 874 (1051)
Q Consensus 796 ~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~-g~~vi~~TH~~e 874 (1051)
+++.+++..|++..+.|+|..++.++..++..+++|+++|||||++||++.++..+.+.+++++.+. ++++|++||+++
T Consensus 75 ~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~ 154 (216)
T cd03284 75 RIFTRIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHE 154 (216)
T ss_pred eEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHH
Confidence 9999999999999999999999999999999999999999999999999999999989999999887 899999999999
Q ss_pred hhhCcccccccccceeEEEEeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHH
Q 001570 875 IFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLY 936 (1051)
Q Consensus 875 l~~l~~~~~~i~~~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~vi~rA~~~~ 936 (1051)
+.++.+....+.+++|.....++++.++|++.+|.++.|||+++|+++|+|++|++||++++
T Consensus 155 l~~l~~~~~~v~~~~~~~~~~~~~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~~ 216 (216)
T cd03284 155 LTELEGKLPRVKNFHVAVKEKGGGVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREIL 216 (216)
T ss_pred HHHHhhcCCCeEEEEEEEEeeCCeEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHhC
Confidence 99988888889999999888889999999999999999999999999999999999999873
No 16
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=5.8e-34 Score=298.09 Aligned_cols=184 Identities=36% Similarity=0.556 Sum_probs=174.5
Q ss_pred EEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcCCCc
Q 001570 753 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRS 832 (1051)
Q Consensus 753 i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~~s 832 (1051)
+++||||||+|||||+|+|+...+++|.|++||++.+.++++|+++.+++..+++..+.|+|+.+|++++.++..+++|+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHHcC-CcEEEEeccChhhhhCcccccccccceeEEEEeCCceeeeeeeecCCCC
Q 001570 833 LVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICR 911 (1051)
Q Consensus 833 LlLLDEp~~GlD~~~~~~l~~~ile~L~~~-g~~vi~~TH~~el~~l~~~~~~i~~~~~~~~~~~~~l~~~y~l~~G~~~ 911 (1051)
++|+|||++|||+.++..+.+.+++++.+. ++++|++||++++...++...++.+++|.....++++.++|++.+|.++
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~Y~l~~G~~~ 160 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEETENLTFLYKLTPGVAG 160 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEecCceeEEEEEeECCCC
Confidence 999999999999999999999999998874 8999999999999988877788999999988888889999999999999
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHH
Q 001570 912 ESLAFETAKREGVPETIIQRAEDLY 936 (1051)
Q Consensus 912 ~s~ai~vA~~~Glp~~vi~rA~~~~ 936 (1051)
.|||+++|+.+|+|++|++||++++
T Consensus 161 ~s~a~~~a~~~g~~~~i~~~a~~~~ 185 (185)
T smart00534 161 KSYGIEVAKLAGLPKEVIERAKEIL 185 (185)
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHhC
Confidence 9999999999999999999999863
No 17
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=4.2e-33 Score=295.20 Aligned_cols=184 Identities=28% Similarity=0.389 Sum_probs=173.1
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCCccCCccchh
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQ 815 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs 815 (1051)
.+++++||+++ |++++|+||||+||||++|+|+++++++|+|++||+..+.++.+|+++.+++..+++.++.|+|+
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs 93 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFA 93 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHH
Confidence 46799999999 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeEEEEe
Q 001570 816 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYL 895 (1051)
Q Consensus 816 ~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~~~~~ 895 (1051)
.||+++..+++.+++|+|+|||||++|||+.++..+.+++++++.+.|+++|++||++++++......++.+.+|..+..
T Consensus 94 ~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~ 173 (204)
T cd03282 94 SEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGNKSCVVHLHMKAQSI 173 (204)
T ss_pred HHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhcCCCeEEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999988999999999999998877777889999988764
Q ss_pred -CCceeeeeeeecCCCC-CcHHHHHHHHcC
Q 001570 896 -DGQTVPTWKLVDGICR-ESLAFETAKREG 923 (1051)
Q Consensus 896 -~~~l~~~y~l~~G~~~-~s~ai~vA~~~G 923 (1051)
++++.++|++.+|.+. .|||+++|+.+.
T Consensus 174 ~~~~~~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 174 NSNGIEMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred CCCceeeEEEEeeCCCCCCccHHHHHHHhh
Confidence 4889999999999999 999999999764
No 18
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=2.5e-32 Score=291.68 Aligned_cols=184 Identities=33% Similarity=0.485 Sum_probs=170.1
Q ss_pred CceeeeeEee--c--eEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCCccCCccchhH
Q 001570 741 GSAVHNTVDM--Q--SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 816 (1051)
Q Consensus 741 ~~~vl~~isl--g--~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~ 816 (1051)
+.+|+||+++ + ++++|+||||+|||||||+|++..++++.|+++|+..+.++++|+++.+++..+++..+.|+|+.
T Consensus 15 ~~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~ 94 (213)
T cd03281 15 DSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMI 94 (213)
T ss_pred CceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHH
Confidence 5799999999 2 78999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC---CcEEEEeccChhhhhCcc--cccccccceeE
Q 001570 817 EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI---GCLGIVSTHLHGIFSLPL--KIKNAAYKAMG 891 (1051)
Q Consensus 817 e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~---g~~vi~~TH~~el~~l~~--~~~~i~~~~~~ 891 (1051)
+|+++..++..+.+++|+|||||++|||+.++..++.++++++.+. +.++|++||+++++.... ..+.+.+++|.
T Consensus 95 el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~~~~~~~~~~~~~~ 174 (213)
T cd03281 95 DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSLLPERLKIKFLTME 174 (213)
T ss_pred HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhhhccCCceEEEEEE
Confidence 9999999999999999999999999999999999999999999764 358999999999988664 46788899998
Q ss_pred EEEe------CCceeeeeeeecCCCCCcHHHHHHHHcCC
Q 001570 892 TEYL------DGQTVPTWKLVDGICRESLAFETAKREGV 924 (1051)
Q Consensus 892 ~~~~------~~~l~~~y~l~~G~~~~s~ai~vA~~~Gl 924 (1051)
+... .+++.|+|++.+|.++.|||+++|+++|+
T Consensus 175 ~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 175 VLLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred EEEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 8665 47899999999999999999999999996
No 19
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.97 E-value=2.4e-31 Score=281.16 Aligned_cols=184 Identities=28% Similarity=0.379 Sum_probs=171.1
Q ss_pred CCceeeeeEee--ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHH
Q 001570 740 EGSAVHNTVDM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 817 (1051)
Q Consensus 740 ~~~~vl~~isl--g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e 817 (1051)
.+++|+||+++ |++++||||||||||||+|+|+|.+++++.|.++|+....++ .+.+|..+...+++..+.+.|..+
T Consensus 12 ~~~~v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l~~~~~~~d~l~~~~s~~~~e 90 (199)
T cd03283 12 REKRVANDIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKIFTSIRVSDDLRDGISYFYAE 90 (199)
T ss_pred CCCeecceEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceEEEeccchhccccccChHHHH
Confidence 35789999999 789999999999999999999999999999999999888887 788999999999999999999999
Q ss_pred HHHHHHHHHHcC--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeEEEEe
Q 001570 818 MSEIRSIVTATT--SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYL 895 (1051)
Q Consensus 818 ~~~~~~il~~a~--~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~~~~~ 895 (1051)
+.++..++..+. +|+++|+|||++|||+.++..+..++++.+.+.+.++|++||+++++......+++.+++|.+...
T Consensus 91 ~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~~~~~~~~ 170 (199)
T cd03283 91 LRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNYHFREDID 170 (199)
T ss_pred HHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEEEEEEEEE
Confidence 999999999988 999999999999999999998878888888888999999999999998877788999999999888
Q ss_pred CCceeeeeeeecCCCCCcHHHHHHHHcCC
Q 001570 896 DGQTVPTWKLVDGICRESLAFETAKREGV 924 (1051)
Q Consensus 896 ~~~l~~~y~l~~G~~~~s~ai~vA~~~Gl 924 (1051)
++.+.++|++.+|.|+.|||+++|+.+|+
T Consensus 171 ~~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 171 DNKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred CCeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 89999999999999999999999999985
No 20
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.97 E-value=4.3e-31 Score=280.27 Aligned_cols=185 Identities=43% Similarity=0.640 Sum_probs=174.4
Q ss_pred CCceeeeeEee--ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHH
Q 001570 740 EGSAVHNTVDM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 817 (1051)
Q Consensus 740 ~~~~vl~~isl--g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e 817 (1051)
..++++||+++ |++++|+||||||||||||+|++..++++.|.++|+....++++++++..++..+++..+.|+|+.+
T Consensus 16 ~~~~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e 95 (202)
T cd03243 16 GETFVPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAE 95 (202)
T ss_pred CCceEeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHH
Confidence 46799999999 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeEEEEeCC
Q 001570 818 MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDG 897 (1051)
Q Consensus 818 ~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~~~~~~~ 897 (1051)
++++..+++.+.+|+++|+|||++|||+.++..+.+.+++.+.+.++++|++||+.++...++....+.+++|..+...+
T Consensus 96 ~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (202)
T cd03243 96 LLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTG 175 (202)
T ss_pred HHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCC
Confidence 99999999999999999999999999999999998888998888899999999999999988877888889999888888
Q ss_pred ceeeeeeeecCCCCCcHHHHHHHHcCC
Q 001570 898 QTVPTWKLVDGICRESLAFETAKREGV 924 (1051)
Q Consensus 898 ~l~~~y~l~~G~~~~s~ai~vA~~~Gl 924 (1051)
++.++|++.+|.++.|||+++|+..|+
T Consensus 176 ~~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 176 GLTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred eeeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 899999999999999999999999985
No 21
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=99.97 E-value=4.9e-33 Score=330.70 Aligned_cols=919 Identities=27% Similarity=0.271 Sum_probs=634.8
Q ss_pred cccccCccc-----ccccCccccCchHHHHHHHHhcCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCCCCCCCCcccc
Q 001570 107 YSNLLGLDV-----NLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKA 181 (1051)
Q Consensus 107 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~K~~~p~~vll~r~Gdfye~~~~DA~~~~~~l~l~~~~~~~~~~~~~~ 181 (1051)
+.|.+|+++ .++++..|.+++. +-.++|+..|...++.||+. ||.-+.|+..+++.-+.+.-++..+++.+-.
T Consensus 20 ~~~~v~~~~~~e~k~l~~~t~k~~~~~-e~~~~~~~~~r~~~~~rv~~-~e~~~~d~~~~~~~~~~~~k~~~~sDsd~d~ 97 (1125)
T KOG0217|consen 20 YRNSVGLKPKEEPKSLRNGTLKIKNLK-EKEEFKSGQPREVVSSRVKE-YEAVGDDADIVVESSSEKPKSGLDSDSDEDF 97 (1125)
T ss_pred cccccccCCccchhhhcCCCcCcCccc-hhhHhhccCccccccccccc-hhhcCCCccceeeecccCCccccCCCccccc
Confidence 556677777 7899998888777 77899999999999999999 9999999999999999999875567889999
Q ss_pred c----cCcccHHHHHHHHHHCCceEEEEeccCC--------ccccCCcceEeeeeeecCCCccccccccCCCCCCCCCCc
Q 001570 182 G----CPVVNLRQTLDDLTRNGYSVCIVEEVQG--------PTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPM 249 (1051)
Q Consensus 182 g----~P~~~~~~~l~~L~~~G~~vai~eq~e~--------p~~ak~~v~R~v~~vvTPGT~~~~~~l~~~~~~~~~~a~ 249 (1051)
| +|....|.-+++.++.||.|++.|+.++ +..++.+..+.|+..-+|+.+++.+.+..++.+.+..++
T Consensus 98 g~k~~~~~~~~d~~~~D~~~~d~~~~~~ee~~~~~~~~~~~~~~~r~~~a~~v~k~~~kk~~~~~~~~~~~~~~~~~~p~ 177 (1125)
T KOG0217|consen 98 GGKEVEEKEDSDEELDDETASDYEVVISEESEGGEPVCRVSDTDSRSRKAESVSKGKSKKSPSDSGAVSMGHDLDFNDPM 177 (1125)
T ss_pred CcccccccccccccccccccCCcceeccccccCCCcccccCCCcccchhcccccccccCCCCCCccccccccccccCCCC
Confidence 9 9999999999999999999999999988 333445688888888899999999988888888888888
Q ss_pred c--EEEEEcCCceEEEEEeccc----cceeeeec--CCCHHHHHHHHHcCCcceEEEcCCcccCCCCCccccccCCCCcc
Q 001570 250 P--VIGVSRSAKGYCIISILET----MKTYSLED--GLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLL 321 (1051)
Q Consensus 250 ~--~~gi~~~~~~~~~~s~~~~----~~~~~v~~--~~t~~~l~~~L~~~~p~Eill~~~~~~~~~~~~~~~~~~~~~~l 321 (1051)
+ ..+.++++++|+.++.++. +..|.... ++..+++.+.+.|-.-.|-+-|..+..+.+ .|.+|+++...
T Consensus 178 ~~~~~~a~r~~~~~~~i~~~~~~~~~~~a~~~E~~r~l~~e~~RD~~rrr~~dp~yDp~TLyiP~s---~~~kftpg~kq 254 (1125)
T KOG0217|consen 178 PLREGQASRSASGYCGISNGETELSRMEAFDHEKERYLKLEDVRDALRRRRGDPEYDPRTLYIPPS---FWKKFTPGEKQ 254 (1125)
T ss_pred ccccCccccccccccccccccccccchhhhcccchhhccHHHhhhhhcCCCCCCCCCccceecCHH---HHhcCCchhhh
Confidence 7 7788899999999999998 66666665 678888999999866555555555433322 47777777778
Q ss_pred cccccccccc---ccCCchHHHHHHHHhhhcCCCCccccccccccCCccccc---eeecHHhhhc--cCCCCCCCccceE
Q 001570 322 WGECIARHFE---WFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRP---LHLGTATQIG--AIPTEGIPCLLKV 393 (1051)
Q Consensus 322 ~~~~~~~~~~---~f~~~~~~~ll~~v~~~~gl~~~~~~~~~~~~~~~~~~~---LyLd~~Tq~e--ll~~~~~~sLl~v 393 (1051)
|-.+.+.+++ ||....-.++.++.+...+..-.-.|.+++.++...|.. +|+++.+|+| +.+..+..+.+..
T Consensus 255 wWeiKs~~fD~ivfFk~GKFyELye~DA~vg~~~~dl~f~~vN~~~~GfPE~sf~~~a~q~iq~GYkvarVEQtEt~l~~ 334 (1125)
T KOG0217|consen 255 WWEIKSDNFDTIVFFKKGKFYELYEMDALVGARLFDLKFMDVNMPHSGFPEGSFDYWADQFIQKGYKVARVEQTETPLGK 334 (1125)
T ss_pred hhhhhhhcccEEEEEecchHHHHHhhhhhhhhhhcceeecccccccCCCCccchhhHHHHHHhccceeeeeccccChHHh
Confidence 8888899998 787766677777644332222222355555556666653 7999999997 6666666788888
Q ss_pred ecCCCccC----CCHHHHHHhhhcCCcccHHHHHHHHHhHhhhhhcCCCcHH--H-----HHHHHhcCCCCcccHH--HH
Q 001570 394 LLPSNCSG----LPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFT--C-----LVKLLELREANHIEFC--RI 460 (1051)
Q Consensus 394 ~l~~t~t~----mg~r~LR~llL~P~~~sl~~~I~~r~t~mg~~l~~i~dle--r-----L~~~L~~p~a~~~dl~--~I 460 (1051)
.+..+.+. +-+|.+++.+..++..+..-.++..++.+-++.++.++.. . ..--.+.++++..+|+ ++
T Consensus 335 e~r~~~~~~kdkvvrRev~~ilt~GT~td~~l~~~~~akylmai~e~~~~~~~~~~s~gvc~iDtstge~~~~eF~DDr~ 414 (1125)
T KOG0217|consen 335 EIRERKTGKKDKVVRREVCRILTNGTLTDIALLTSDLAKYLMAIKESEESYSTGEVSFGVCFIDTSTGEINIGEFCDDRH 414 (1125)
T ss_pred hhhhcccccchhhHHHHHHHHhcCCcchhHHHhccHHHHHHHHHhhcCCCCCcCceeeeEEEEEcccceEEEEEeecchh
Confidence 78888888 8999999999999986666577778888888877777632 2 2334567888899999 89
Q ss_pred HHHHHHHHHhhcChHHHHHHHhccCchhhcccchhhHHHhhhHhH----HHHHH-HHHhhhccCCchh--hhc--cCCCC
Q 001570 461 KNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECR----LASVR-IGEMISLDGESDQ--KIC--SYDNI 531 (1051)
Q Consensus 461 ~~rL~aV~~l~~~~~l~~~L~~~l~~~~~~~g~~~dlerl~~~~~----~~~~~-i~~~i~l~~e~p~--~~~--~~~~I 531 (1051)
++.|+.++..+..-++-.....+..+++..++...+.....+-|. +..+. .+++|.. +.... +-+ +....
T Consensus 415 ~s~L~tlLs~~rp~E~I~e~~~ls~~t~~~ik~~~~~~~~~n~~~~~eFwdsek~~~eii~~-dy~~~~g~e~~~sil~~ 493 (1125)
T KOG0217|consen 415 CSKLDTLLSQVRPVELIEERKNLSDPTKVIIKLKLSSNLVENLVPKSEFWDSEKTGREIISE-DYFESLGLEDSPSILKS 493 (1125)
T ss_pred hhHHHHHHHcccHHHHHHHhhccCCceeeeeeeeecchhhhcccChhhhcchhhHHHHHhhh-hhhhcccccCchhhccC
Confidence 999999999888888888888888888888888777666666565 33333 3334442 10000 000 00111
Q ss_pred Ch---hHHhhcchhhhhhhhhcccchhHHHHHHHHHHHHHh---hccCchhHHhhhhccccCCCCCchhhhhhhccccee
Q 001570 532 PS---EFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLA---VTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVW 605 (1051)
Q Consensus 532 ~~---~f~~~lds~~~g~V~~~~~~e~l~elr~l~~~L~~a---I~ed~lpi~~re~~~ir~tgg~~~eI~y~~~~~~~~ 605 (1051)
|. .+.-.....|+.+++..++++++-.+.......... +..|..+++..+...-...|+....+-|...+..+|
T Consensus 494 p~~~~~la~safg~~~~Ylk~~~id~~llsm~n~~ey~~~~~s~mvlD~~tL~NleIf~Ns~~G~~~gtL~~~~~~csTp 573 (1125)
T KOG0217|consen 494 PNTDKELALSAFGGLFYYLKKLLIDEELLSMKNFEEYDSLDQSEMVLDGATLENLEIFSNSRNGGDEGTLFYAVNRCSTP 573 (1125)
T ss_pred CCccchhhHHHHHHHHHHHHHHhhHHHHhhhhhhhhcchhcccceeecchhhhhhhhhccCCCCCCchhHHHHHhhccCh
Confidence 11 122222357888999999998888888887776666 555665666555432225678888899988888888
Q ss_pred ecccccccccccCCCCccc--cccccccccccCc------cccceeeehHHHHHHHHHHHHHHHH------HHHHHHHHH
Q 001570 606 FKGKKFRPTVWASTPGEEQ--IKQLKPAVDSKGR------KVGEEWFSTLKVEEALERYHEAGAK------AKAKVLELL 671 (1051)
Q Consensus 606 l~Gy~ieV~v~~~~~~~~~--I~~l~~~~~~~g~------~v~~e~f~t~eL~ea~er~~~ae~~------a~e~i~eiL 671 (1051)
+ |+++.. .|...+..++ |.+.+......+. ++..+++..|+++.++.|+.+.... .+.+.++-+
T Consensus 574 f-GKRllk-~Wl~~Pl~~~~~I~~R~dav~~l~~~~~~~~~~~e~l~klPDlERlL~Rih~~~~~~~k~i~~f~rvLegf 651 (1125)
T KOG0217|consen 574 F-GKRLLK-TWLMAPLCDKEDIKQRQDAVDSLGKAPMDRTKVGETLKKLPDLERLLVRIHNGGEKNKKKIADFIRVLEGF 651 (1125)
T ss_pred H-HHHHHH-HHhhCcCCCHHHHHHHHHHHHHHhcCchhHHHHHHHHhhCCcHHHHHHHHHhcCccchhHHHHHHHHHHHH
Confidence 8 887766 6655554333 5543333333333 5556678899999999999987666 777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhh------hcccc-----ccccCccccc---cccccc------ceee
Q 001570 672 RGLSSELQTKINILVFASMLLVIGKALFA---HVS------EGRRR-----KWVFPALKDI---ELDGAN------CLKM 728 (1051)
Q Consensus 672 ~eL~~~L~~~~~~L~~l~~lla~Adal~~---~a~------~a~~~-----~~~~P~~~~~---~~~~~~------~~~~ 728 (1051)
+++...++..++.+.+.+....+...+.+ ++. .|..+ .|..|..... ...+.. ....
T Consensus 652 k~~~~~~~~~~~v~~~~~~~~~is~~~~~~p~~~~~i~~~~~af~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~L~ 731 (1125)
T KOG0217|consen 652 KEINKLLGSLINVLKEGEGLRLISELLESMPNLSEEIENWTEAFDRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAENELL 731 (1125)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcCccCCCccccHHHHHHhhHHHHHHHHHH
Confidence 99999888888887765554444444433 211 11111 3333322221 000111 1112
Q ss_pred cccCCcccccCCCceeeeeEeeceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCCcc
Q 001570 729 NGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPA 808 (1051)
Q Consensus 729 ~~~~~~~~~~~~~~~vl~~islg~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~ 808 (1051)
..+.+++..+.-...+.+++.-....+-+++|++|++. ++-+.-.....-.+.+.|...+.++.++++..+....++
T Consensus 732 ~~L~~~rk~l~c~si~~~~vGk~~y~lEvP~n~~~~s~-~~~~~~S~~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~-- 808 (1125)
T KOG0217|consen 732 AYLEEYRKRLGCSSIVFVDVGKDVYQLEVPENGGVPSS-LRYELMSAKKGVSRYYTPDLRKLIAHLDEAEERKKSSLS-- 808 (1125)
T ss_pred HHHHHHHHhcCCCceeEeecCceEEEEecCcccCCCCc-hHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHHHH--
Confidence 33445555554445566666667889999999999999 565544444455667889888889988887776533221
Q ss_pred CCccchhHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHH----HHHHHHHHHHHHcCCcEEEEeccChhhhhCccc---
Q 001570 809 DGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKG----TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK--- 881 (1051)
Q Consensus 809 ~~~stfs~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~----~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~--- 881 (1051)
...+.|...+.... +.-+++-..+..+|+.++++....+ .... .+.+.... +...++.+|-|--..+...
T Consensus 809 d~~~r~~~~f~~~~-~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp-~i~~~~dt-~~~l~~~~~~Hpcfsl~s~~~~ 885 (1125)
T KOG0217|consen 809 DLKRRLIVRFDEHY-IIWQATVKALASIDCLLSLAETSKGLGGPMCRP-EIVESTDT-PGFLIVKGLRHPCFSLPSTGTS 885 (1125)
T ss_pred HHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCcccc-eeecccCC-CceeEEecccCceeecCcCCCc
Confidence 22223333322221 1122233345557777776666443 1221 23332222 2256677776655443322
Q ss_pred -ccccccceeEEEEeCC-ceeeeeeeecCCCCCcHHHHHHHHcC--CCHHHHHHHH--HHHHHh----------------
Q 001570 882 -IKNAAYKAMGTEYLDG-QTVPTWKLVDGICRESLAFETAKREG--VPETIIQRAE--DLYIAC---------------- 939 (1051)
Q Consensus 882 -~~~i~~~~~~~~~~~~-~l~~~y~l~~G~~~~s~ai~vA~~~G--lp~~vi~rA~--~~~~~~---------------- 939 (1051)
.+|.....+......+ -.-|+.....+.+.+.-...+++..| +|.++++.+- .|...+
T Consensus 886 fipN~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~im~g~STF~vE 965 (1125)
T KOG0217|consen 886 FIPNDVELGGAEENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDIMSGESTFFVE 965 (1125)
T ss_pred cccchhhccccccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccchhcCCceEEEe
Confidence 3444433332221112 11245555566667777788889999 9999877643 333333
Q ss_pred --------------------c-----------------ccchhhccccCCCCcc-cCcceeEEEecC-CccceecccCCc
Q 001570 940 --------------------G-----------------VNCVMIAAREQPPPSI-IGASCVYVMLRP-DKKLYIGQTDDL 980 (1051)
Q Consensus 940 --------------------~-----------------~~~~~~~~~~~~~~~~-~~~~~v~~~~~~-~~~~~~~~~~~~ 980 (1051)
| ..+...+.++.+++++ .+..|||++++| +..+|.+.+.|.
T Consensus 966 LsET~~IL~~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd~ 1045 (1125)
T KOG0217|consen 966 LSETKKILKHATRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLCVDFMHHPQVRLLHMACVVDE 1045 (1125)
T ss_pred ccchHHHHhhcCccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCccccccchhHhhhcCccccchhheeeecC
Confidence 0 1223344567788887 888899999999 567888888888
Q ss_pred cc-hhhhhccccCccccceEEEecCCchHHHHHHHHHHhhhhhccccccccccCCCcccc
Q 001570 981 DG-RIRAHRGKEGMQSASFLYFVVPGKSIACQIETLLINQLYSQGFLLANIADGKHRNFG 1039 (1051)
Q Consensus 981 ~~-r~~~~r~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~l~~~~~~l~~~~~~~~~~~~ 1039 (1051)
++ +.-.||..+|.+--+..|-++.++++.+|+.+..++++...+..+.|.+|++||+|+
T Consensus 1046 e~~vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~e~~~~~~~d~~~r~~~ 1105 (1125)
T KOG0217|consen 1046 EIDVTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHELEKSSANAADGKIREVV 1105 (1125)
T ss_pred CccEEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHhhh
Confidence 88 777788888988777777778899999999999999999999999999999999999
No 22
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.6e-30 Score=316.13 Aligned_cols=301 Identities=25% Similarity=0.318 Sum_probs=262.7
Q ss_pred CccccccccccccccCccccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001570 621 GEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFA 700 (1051)
Q Consensus 621 ~~~~I~~l~~~~~~~g~~v~~e~f~t~eL~ea~er~~~ae~~a~e~i~eiL~eL~~~L~~~~~~L~~l~~lla~Adal~~ 700 (1051)
.+..++++++..++.|.+.|.+|-... .+.+++..+..+...++..++.++++.+.+++..+..+...+...|.+.+
T Consensus 196 fk~~i~giv~d~sssg~tl~ieP~~vv---~l~n~~~~l~~eE~~e~e~il~~lsa~v~~~~~~l~~~~~~~~~lD~i~A 272 (753)
T COG1193 196 FKGAIKGIVHDTSSSGATLYIEPRSVV---KLNNELRALLVEEDEEEERILRELSALVAPVIPELEILLEIIGELDFIEA 272 (753)
T ss_pred hhhhcCceEeecccccCeeeecchHHH---hhccHhhhhhccchHhHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHH
Confidence 567899999999999999998874444 45556667777777777788899999999999888888888888888888
Q ss_pred hhhhccccccccCcccccccccccceeec-ccCCcccccCCCceeeeeEeec---eEEEEEcCCCCCcchHHHHHHhhHH
Q 001570 701 HVSEGRRRKWVFPALKDIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDMQ---SLFLLTGPNGGGKSSLLRSICAASL 776 (1051)
Q Consensus 701 ~a~~a~~~~~~~P~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vl~~islg---~i~~ItGpNGsGKSTLLk~I~gl~~ 776 (1051)
.+..+....++.|.+++. ..+.+. +.||.. ...+++++.++ ..++|||||.+|||+.||+++.+.+
T Consensus 273 k~~~~~~~~~v~P~~~~~-----~~l~l~~~~HPll-----~~~v~~~i~~~~e~~~l~ITGpN~GGKtvtLKTlgl~~l 342 (753)
T COG1193 273 KVRYAKALKGVKPDFSND-----GVLELLDARHPLL-----KEDVPNDLELGEELDRLIITGPNTGGKTVTLKTLGLLRL 342 (753)
T ss_pred HHHHHHhhccCCCccCCC-----ceEEeccccCccC-----ccccccccccccccceeeEecCCCCcceehHHHHHHHHH
Confidence 888888889999999853 234443 334432 12288899884 6899999999999999999999999
Q ss_pred hhhcceeecCCCC-ChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHH
Q 001570 777 LGICGLMVPAESA-SIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 855 (1051)
Q Consensus 777 la~~G~~vpa~~~-~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~i 855 (1051)
|+|.|.++|+... .++.|+.+|..+|..+++.+.+||||.+|..+..++..+. +|+++||.++||||.+|.+++.++
T Consensus 343 m~q~gl~i~a~~gsei~~F~~i~aDIGDeQsIeqsLSTFSshm~~i~~il~~~d--sLvl~DElg~GTdp~EgaaLai~i 420 (753)
T COG1193 343 MAQSGLPIPALEGSELPVFVKIFADIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDELGSGTDPDEGAALAIAI 420 (753)
T ss_pred HHHcCCCeeccCCCcchhHHHhhhccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHHhhcCCCcchhHHHHHHH
Confidence 9999999999875 8999999999999999999999999999999999995555 999999999999999999999999
Q ss_pred HHHHHcCCcEEEEeccChhhhhCcccccccccceeEEEEeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHH
Q 001570 856 IETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDL 935 (1051)
Q Consensus 856 le~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~vi~rA~~~ 935 (1051)
++++.+.++.++.+||+.++..+......+.|..|.++. +++.|+|++..|.+++|||+++|..+|+|..+|++|+..
T Consensus 421 le~l~~~~~~~~~tTH~~elk~~~~~~~~v~nas~~fd~--etL~ptY~l~~G~~g~S~Af~ia~rlGl~~~iie~a~~~ 498 (753)
T COG1193 421 LEDLLEKPAKIVATTHYRELKALAAEREGVENASMEFDA--ETLRPTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTE 498 (753)
T ss_pred HHHHHhcccceehHhhHHHHHHHHhcchhhhchhhhhhH--HHhhHHHHHhcCCcccchHHHHHHHcCCCHHHHHHHHHh
Confidence 999999999999999999999888888899999887655 899999999999999999999999999999999999988
Q ss_pred HHH
Q 001570 936 YIA 938 (1051)
Q Consensus 936 ~~~ 938 (1051)
.+.
T Consensus 499 ~g~ 501 (753)
T COG1193 499 FGE 501 (753)
T ss_pred cCc
Confidence 754
No 23
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.97 E-value=1.6e-30 Score=275.56 Aligned_cols=183 Identities=30% Similarity=0.477 Sum_probs=165.9
Q ss_pred CCceeeeeEee--c-eEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCC-CChhhHHHHHHhcCCCCCccCCccchh
Q 001570 740 EGSAVHNTVDM--Q-SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES-ASIPYFDAIMLHMKSYDSPADGKSSFQ 815 (1051)
Q Consensus 740 ~~~~vl~~isl--g-~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~-~~i~~~d~i~~~~~~~d~~~~~~stfs 815 (1051)
..+++++++++ | ++++|+||||||||||||+|+...+++|.|+++|+.. ..++++|+++..++..+++..+.|+|+
T Consensus 14 ~~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs 93 (200)
T cd03280 14 GEKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFS 93 (200)
T ss_pred CCceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHH
Confidence 45789999999 4 5899999999999999999998889999999999975 578889999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeEEEEe
Q 001570 816 VEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYL 895 (1051)
Q Consensus 816 ~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~~~~~ 895 (1051)
.||+++..++..+++|+++|+|||++|||+..+..+...+++.+.+.|+++|++||+.++..+++....+.++++.++
T Consensus 94 ~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~-- 171 (200)
T cd03280 94 SHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFD-- 171 (200)
T ss_pred HHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe--
Confidence 999999999888999999999999999999999999888888888889999999999988888777777777777654
Q ss_pred CCceeeeeeeecCCCCCcHHHHHHHHcCC
Q 001570 896 DGQTVPTWKLVDGICRESLAFETAKREGV 924 (1051)
Q Consensus 896 ~~~l~~~y~l~~G~~~~s~ai~vA~~~Gl 924 (1051)
.+++.++|++.+|.++.|||+++|+.+|+
T Consensus 172 ~~~~~~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 172 PETLKPTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred cCcccEEEEEeECCCCCcHHHHHHHHcCC
Confidence 57899999999999999999999999986
No 24
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=99.96 E-value=2.3e-29 Score=242.19 Aligned_cols=108 Identities=32% Similarity=0.498 Sum_probs=93.5
Q ss_pred hHHHHHHHHhcCCCeEEEEeecchhhhHHHHHHHHHHHhCCCcCC--CCCCCCccccccCcccHHHHHHHHHHCCceEEE
Q 001570 127 LNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG--GLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCI 204 (1051)
Q Consensus 127 ~~~~~~~~K~~~p~~vll~r~Gdfye~~~~DA~~~~~~l~l~~~~--~~~~~~~~~~g~P~~~~~~~l~~L~~~G~~vai 204 (1051)
|.+||+++|++|||+|+|||+|||||+|++||+.+|+.|+++++. .....++||||||.++++.|+++|+++||+|+|
T Consensus 3 ~~~~y~~lk~k~~d~i~lf~~G~fYe~y~~DA~~~a~~l~~~~~~~~~~~~~~~~~~gfp~~~l~~~l~~Ll~~G~~V~i 82 (113)
T PF01624_consen 3 FEQQYWELKEKYPDTIVLFQVGDFYEAYGEDAEFVAEILGLKLSKRKTGGGKSVPMAGFPKSQLDKYLKKLLEAGYRVAI 82 (113)
T ss_dssp HHHHHHHHHCTSTTSEEEEEETTEEEEECHHHHHHHHHHTSSSEEEECSSSECEEEEEEEGGGHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHhhCCCeEEEEEcCCEEEEEccCHHHHHHhccceeeeccccccccccEecccHHHHHHHHHHHHHcCCEEEE
Confidence 789999999999999999999999999999999999999999996 111223999999999999999999999999999
Q ss_pred EeccCCccccCCcceEeeeeeecCCCcccc
Q 001570 205 VEEVQGPTQARSRKSRFISGHAHPGSPYVF 234 (1051)
Q Consensus 205 ~eq~e~p~~ak~~v~R~v~~vvTPGT~~~~ 234 (1051)
|||++++...++.+.|+|++|+||||.+++
T Consensus 83 ~~q~~~~~~~~~~~~R~v~~i~TpGt~~~~ 112 (113)
T PF01624_consen 83 YEQVETPSETKGLIEREVTRIYTPGTLIDD 112 (113)
T ss_dssp EEE-S-HHHHSSS--EEEEEEEBTTS-TST
T ss_pred EEecCCccccCCCccEEEEEEECcCeecCc
Confidence 999999988778999999999999997654
No 25
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.9e-22 Score=216.69 Aligned_cols=158 Identities=19% Similarity=0.189 Sum_probs=122.6
Q ss_pred CcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh-----------------hcceeecCCCC--
Q 001570 733 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------------ICGLMVPAESA-- 789 (1051)
Q Consensus 733 ~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la-----------------~~G~~vpa~~~-- 789 (1051)
++.+.+.++ .|+.|++| |++++|+||||||||||+|+|+|++... ....||||...
T Consensus 9 nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d 87 (254)
T COG1121 9 NLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVD 87 (254)
T ss_pred eeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccC
Confidence 344555545 69999999 8999999999999999999999987211 12448998642
Q ss_pred -Ch---------------------------hhHHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCC
Q 001570 790 -SI---------------------------PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 -~i---------------------------~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~ 840 (1051)
.+ ..+++.+.++|+.+...+..+.+|+|++|...+ .+.+++|+|+||||||
T Consensus 88 ~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~ 167 (254)
T COG1121 88 RSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPF 167 (254)
T ss_pred CCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCc
Confidence 11 124678889999999999999999999986655 5669999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeEE
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT 892 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~~ 892 (1051)
+|+|+.....+ ..++..+++.|+|||++|||++.+.-..+..-..|.++..
T Consensus 168 ~gvD~~~~~~i-~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~ 218 (254)
T COG1121 168 TGVDVAGQKEI-YDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIA 218 (254)
T ss_pred ccCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEe
Confidence 99999887777 7788888877999999999998765332223334555443
No 26
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=2.5e-22 Score=207.18 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=121.9
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCCChhhH
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIPYF 794 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~~i~~~ 794 (1051)
++..|+++|++ |++++|+||+|||||||||||+++... .+.-.+|+|.+..+|+.
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHl 92 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHL 92 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccc
Confidence 57889999999 899999999999999999999998621 11223889988877652
Q ss_pred -------------------------HHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 795 -------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 795 -------------------------d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
-.++.++|+.+......+.+|+|++|...| .+.+.+|+++|+|||||+|||+..
T Consensus 93 TvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv 172 (240)
T COG1126 93 TVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELV 172 (240)
T ss_pred hHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHH
Confidence 246778899999999999999999985554 667999999999999999999888
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeE
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 891 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~ 891 (1051)
.++ ..++..|++.|.|.|++||++.+|.... +++.++.-+
T Consensus 173 ~EV-L~vm~~LA~eGmTMivVTHEM~FAr~Va--drviFmd~G 212 (240)
T COG1126 173 GEV-LDVMKDLAEEGMTMIIVTHEMGFAREVA--DRVIFMDQG 212 (240)
T ss_pred HHH-HHHHHHHHHcCCeEEEEechhHHHHHhh--heEEEeeCC
Confidence 887 6777888999999999999999987533 344444444
No 27
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=4.4e-22 Score=207.60 Aligned_cols=141 Identities=20% Similarity=0.264 Sum_probs=115.9
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------hhcceeecCCCCChhh-----
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------GICGLMVPAESASIPY----- 793 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------a~~G~~vpa~~~~i~~----- 793 (1051)
+++.+++|+|| |++++++||||+||||++|+|.|++-. .++| |.|.+...++.
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIG-yLPEERGLy~k~tv~d 91 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG-YLPEERGLYPKMTVED 91 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcc-cChhhhccCccCcHHH
Confidence 67889999999 899999999999999999999999721 2333 78877654322
Q ss_pred -------------------HHHHHHhcCCCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 001570 794 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAG 853 (1051)
Q Consensus 794 -------------------~d~i~~~~~~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~ 853 (1051)
++.++.++++.....+...++|.|++| +..+.+.+++|+|+|||||||||||.+...+ .
T Consensus 92 ql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elL-k 170 (300)
T COG4152 92 QLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELL-K 170 (300)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHH-H
Confidence 356778888888888889999999988 6667778999999999999999999888777 5
Q ss_pred HHHHHHHcCCcEEEEeccChhhhh-Ccccc
Q 001570 854 SIIETLDNIGCLGIVSTHLHGIFS-LPLKI 882 (1051)
Q Consensus 854 ~ile~L~~~g~~vi~~TH~~el~~-l~~~~ 882 (1051)
..+..+++.|+||||+||.++-++ ++++.
T Consensus 171 ~~I~~lk~~GatIifSsH~Me~vEeLCD~l 200 (300)
T COG4152 171 DAIFELKEEGATIIFSSHRMEHVEELCDRL 200 (300)
T ss_pred HHHHHHHhcCCEEEEecchHHHHHHHhhhh
Confidence 555557889999999999998775 44443
No 28
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=9.1e-22 Score=208.75 Aligned_cols=138 Identities=18% Similarity=0.173 Sum_probs=118.5
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------------hcceeecCCCCChhh--------
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMVPAESASIPY-------- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------------~~G~~vpa~~~~i~~-------- 793 (1051)
+..|++|++| |++++|+||+|||||||||+|+|+.... ..-.||+|+.+.+||
T Consensus 15 ~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~ 94 (248)
T COG1116 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVA 94 (248)
T ss_pred ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhhe
Confidence 4789999999 8999999999999999999999997321 112388888888776
Q ss_pred ----------------HHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHH
Q 001570 794 ----------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSII 856 (1051)
Q Consensus 794 ----------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~~l~~~il 856 (1051)
.++++..+|+.+........+|+||+|...| .+.+.+|+++||||||++||...+..+...++
T Consensus 95 l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~ 174 (248)
T COG1116 95 LGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL 174 (248)
T ss_pred ehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHH
Confidence 2456677788888888999999999996655 56699999999999999999999999999999
Q ss_pred HHHHcCCcEEEEeccChhhhhC
Q 001570 857 ETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 857 e~L~~~g~~vi~~TH~~el~~l 878 (1051)
+...+.+.|++|+|||.++|-.
T Consensus 175 ~lw~~~~~TvllVTHdi~EAv~ 196 (248)
T COG1116 175 RLWEETRKTVLLVTHDVDEAVY 196 (248)
T ss_pred HHHHhhCCEEEEEeCCHHHHHh
Confidence 9888899999999999998754
No 29
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.86 E-value=1.3e-21 Score=211.36 Aligned_cols=154 Identities=15% Similarity=0.168 Sum_probs=121.8
Q ss_pred cccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhH--------------------HhhhcceeecCCCCC-
Q 001570 736 FDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLGICGLMVPAESAS- 790 (1051)
Q Consensus 736 ~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~--------------------~la~~G~~vpa~~~~- 790 (1051)
+.| +++.+++++|| |++++|+||||||||||||+|+|++ .+|+.-.||||....
T Consensus 10 ~~y-~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~ 88 (258)
T COG1120 10 FGY-GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAP 88 (258)
T ss_pred EEE-CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCC
Confidence 444 37899999999 8999999999999999999999987 245666789987421
Q ss_pred -------------hh--------------hHHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCC
Q 001570 791 -------------IP--------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRG 842 (1051)
Q Consensus 791 -------------i~--------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~G 842 (1051)
.| .+++.+..++..+...+...++|+|.+|+..| .+.+++|+++||||||++
T Consensus 89 ~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~ 168 (258)
T COG1120 89 FGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSH 168 (258)
T ss_pred CCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccc
Confidence 11 13445788888888889999999999997665 566999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-cCCcEEEEeccChhhhhC-cccccccccceeE
Q 001570 843 TETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFSL-PLKIKNAAYKAMG 891 (1051)
Q Consensus 843 lD~~~~~~l~~~ile~L~-~~g~~vi~~TH~~el~~l-~~~~~~i~~~~~~ 891 (1051)
||...+..+ ..++..+. ++|.|+|+++||++++.. +++..-+.++.+.
T Consensus 169 LDi~~Q~ev-l~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~ 218 (258)
T COG1120 169 LDIAHQIEV-LELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIV 218 (258)
T ss_pred cCHHHHHHH-HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE
Confidence 999999999 55555565 679999999999999864 4444444444443
No 30
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=5.1e-21 Score=214.14 Aligned_cols=152 Identities=19% Similarity=0.203 Sum_probs=118.0
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh-------------------hcceeecCCCCChh-----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGLMVPAESASIP----- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la-------------------~~G~~vpa~~~~i~----- 792 (1051)
++.+++++|| |++++|+||||||||||||+|+|++... +.-.|+|+....++
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~ 96 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVR 96 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHH
Confidence 5799999999 8999999999999999999999998211 12247777654321
Q ss_pred -------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHH
Q 001570 793 -------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIA 852 (1051)
Q Consensus 793 -------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~ 852 (1051)
.++.++..+++.+...+..++||.||+|... +.+.+.+|+++||||||+||||..+..+
T Consensus 97 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~- 175 (293)
T COG1131 97 ENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI- 175 (293)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHH-
Confidence 2446777888877556678999999998554 5777999999999999999999888888
Q ss_pred HHHHHHHHcCC-cEEEEeccChhhhhC-cccccccccceeEEE
Q 001570 853 GSIIETLDNIG-CLGIVSTHLHGIFSL-PLKIKNAAYKAMGTE 893 (1051)
Q Consensus 853 ~~ile~L~~~g-~~vi~~TH~~el~~l-~~~~~~i~~~~~~~~ 893 (1051)
+.+++.+.+.| .|||++||+++.++. +++..-+..+.+...
T Consensus 176 ~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~ 218 (293)
T COG1131 176 WELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE 218 (293)
T ss_pred HHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEe
Confidence 67777777766 899999999988764 554445555555544
No 31
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=1.5e-20 Score=199.38 Aligned_cols=148 Identities=14% Similarity=0.097 Sum_probs=115.7
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH------------------------hhhcceeecCCCCChhh
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL------------------------LGICGLMVPAESASIPY 793 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~------------------------la~~G~~vpa~~~~i~~ 793 (1051)
..++++++| |++++|+||+||||||||++|+|+.. ..+.-.||+|.+..+|.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD 97 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence 478999999 89999999999999999999999861 11222377777655433
Q ss_pred ------------------------HHHHHHhcCCCCCcc-CCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHH
Q 001570 794 ------------------------FDAIMLHMKSYDSPA-DGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 794 ------------------------~d~i~~~~~~~d~~~-~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
...++..+|+.+... ...+.+|+|++|... +.+.+.+|++||.||||.+||...
T Consensus 98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t 177 (226)
T COG1136 98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177 (226)
T ss_pred CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHH
Confidence 233455668877666 778999999988555 466799999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccce
Q 001570 848 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 889 (1051)
Q Consensus 848 ~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~ 889 (1051)
+..+...+.+.-++.|+|+|+||||.+++..+++...+..+.
T Consensus 178 ~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 178 AKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGK 219 (226)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCe
Confidence 999955555544566999999999999999887765555544
No 32
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.82 E-value=5.2e-20 Score=207.61 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=115.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------------------hhcceeecCCCCChhh----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIPY---- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------------------a~~G~~vpa~~~~i~~---- 793 (1051)
+..+++++|| |++++|+||||||||||+|+|+|+... .+.-.|+|++...++.
T Consensus 19 ~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~ 98 (306)
T PRK13537 19 DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVR 98 (306)
T ss_pred CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHH
Confidence 4679999999 899999999999999999999998621 1223477776543221
Q ss_pred --------------------HHHHHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHH
Q 001570 794 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIA 852 (1051)
Q Consensus 794 --------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~ 852 (1051)
++.++..+++.+......+++|+||+|.. .+.+.+.+|+++||||||+||||..+..+
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l- 177 (306)
T PRK13537 99 ENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM- 177 (306)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHH-
Confidence 12344556666666677889999999855 45667999999999999999999888888
Q ss_pred HHHHHHHHcCCcEEEEeccChhhhh-CcccccccccceeEEE
Q 001570 853 GSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTE 893 (1051)
Q Consensus 853 ~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~~~~ 893 (1051)
+.++..+++.|.|+|++||++++++ ++++...+..+.+...
T Consensus 178 ~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~ 219 (306)
T PRK13537 178 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE 219 (306)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 5666667777999999999998774 5666555555555443
No 33
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.82 E-value=3.6e-20 Score=194.62 Aligned_cols=144 Identities=16% Similarity=0.139 Sum_probs=112.5
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhcceeecCCCCChhh--
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAESASIPY-- 793 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G~~vpa~~~~i~~-- 793 (1051)
+++.++++++| |++++++||+||||||+||+|++++- +.+...||-|....+|+
T Consensus 12 ~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~T 91 (309)
T COG1125 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLT 91 (309)
T ss_pred CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCcc
Confidence 36789999999 89999999999999999999999971 11112244444333332
Q ss_pred ----------------------HHHHHHhcCCC--CCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 794 ----------------------FDAIMLHMKSY--DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 794 ----------------------~d~i~~~~~~~--d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
.++++..+|+. +...+..+.+|+|++|...+ .+.|.+|.++||||||+++||..+
T Consensus 92 v~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R 171 (309)
T COG1125 92 VAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITR 171 (309)
T ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhH
Confidence 35677777775 35678889999999886655 566999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccc
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIK 883 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~ 883 (1051)
..+-..+.+.-++.|+|+||+|||+++|- ++++..
T Consensus 172 ~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~ 207 (309)
T COG1125 172 KQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIA 207 (309)
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEE
Confidence 99977777766678999999999999874 554433
No 34
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.82 E-value=3.7e-20 Score=208.27 Aligned_cols=174 Identities=14% Similarity=0.058 Sum_probs=131.5
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh------------------hcceeecCCCCChhhH---
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIPYF--- 794 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la------------------~~G~~vpa~~~~i~~~--- 794 (1051)
++..+++|+|| |+++.|+|||||||||+||+|+|+.... +.-.+|+|+++.+|++
T Consensus 16 g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~ 95 (352)
T COG3842 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVE 95 (352)
T ss_pred CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHH
Confidence 46889999999 8999999999999999999999997321 1223788998888763
Q ss_pred ----------------------HHHHHhcCCCCCccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCCHHHHHHH
Q 001570 795 ----------------------DAIMLHMKSYDSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTETAKGTCI 851 (1051)
Q Consensus 795 ----------------------d~i~~~~~~~d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD~~~~~~l 851 (1051)
.+++..+++.+...+..+.+|+|++|. +.+.+.+.+|.++|||||.++||..-+..+
T Consensus 96 ~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~m 175 (352)
T COG3842 96 ENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQM 175 (352)
T ss_pred HHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHH
Confidence 234455567777778888999999884 555677999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEeccChhhhh-CcccccccccceeEEEEeCCceeeeeeeecCCCCCcHHHHHHHHcC
Q 001570 852 AGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREG 923 (1051)
Q Consensus 852 ~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~G 923 (1051)
...+.+..++.|.|.|++|||.+.+- +.++...+..+. ....|++...|.-... ..+|...|
T Consensus 176 r~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~---I~Q~gtP~eiY~~P~~-------~fVA~FiG 238 (352)
T COG3842 176 RKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGR---IEQVGTPEEIYERPAT-------RFVADFIG 238 (352)
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCc---eeecCCHHHHhhCcch-------HHHHHHhC
Confidence 88888888889999999999998875 444333333333 3333555555532222 25677776
No 35
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.82 E-value=8e-20 Score=208.55 Aligned_cols=153 Identities=19% Similarity=0.130 Sum_probs=115.2
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------------------hhcceeecCCCCChh---h
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP---Y 793 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------------------a~~G~~vpa~~~~i~---~ 793 (1051)
++..+++++|| |++++|+||||||||||||+|+|+... .+...++|+....++ .
T Consensus 52 ~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 131 (340)
T PRK13536 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTV 131 (340)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcH
Confidence 35679999999 899999999999999999999998621 112336776643221 1
Q ss_pred ---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHH
Q 001570 794 ---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCI 851 (1051)
Q Consensus 794 ---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l 851 (1051)
++.++..+++.+.......++|+||+|... +.+.+.+|+++||||||+||||..+..+
T Consensus 132 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l 211 (340)
T PRK13536 132 RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 211 (340)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence 123455567766677778899999998555 4667999999999999999999998888
Q ss_pred HHHHHHHHHcCCcEEEEeccChhhhh-CcccccccccceeEEE
Q 001570 852 AGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTE 893 (1051)
Q Consensus 852 ~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~~~~ 893 (1051)
+.++..+.+.|.|||++||++++++ ++++...+.++.+...
T Consensus 212 -~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~ 253 (340)
T PRK13536 212 -WERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE 253 (340)
T ss_pred -HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 5555566667999999999998874 5666555555555443
No 36
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=4.1e-20 Score=193.55 Aligned_cols=152 Identities=19% Similarity=0.229 Sum_probs=113.1
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH------------------------hhhcceeecCCCCCh
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL------------------------LGICGLMVPAESASI 791 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~------------------------la~~G~~vpa~~~~i 791 (1051)
+++.|+++++| |++++|+||+|+|||||||+|.|+.. ..++| +++|..+.+
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~G-vlFQ~gALF 97 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMG-VLFQQGALF 97 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhhee-EEeeccccc
Confidence 67899999999 89999999999999999999999871 12334 566666554
Q ss_pred hh---HHHH----------------------HHhcCCCCC-ccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCC
Q 001570 792 PY---FDAI----------------------MLHMKSYDS-PADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTE 844 (1051)
Q Consensus 792 ~~---~d~i----------------------~~~~~~~d~-~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD 844 (1051)
.. ++++ +..+|+... .....|.+|+||++.+.+ .+.+.+|+|+++||||+|||
T Consensus 98 ssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLD 177 (263)
T COG1127 98 SSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLD 177 (263)
T ss_pred cccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 22 1211 233466665 667789999999986655 56699999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-cCCcEEEEeccChhhhh-CcccccccccceeEEE
Q 001570 845 TAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTE 893 (1051)
Q Consensus 845 ~~~~~~l~~~ile~L~-~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~~~~ 893 (1051)
|.....+ ..++..|+ ..|.|++++|||.+.+. .+++..-+.++++.+.
T Consensus 178 PI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~ 227 (263)
T COG1127 178 PISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227 (263)
T ss_pred cchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEe
Confidence 9888887 55555565 46999999999987654 4555444455555443
No 37
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.81 E-value=5.9e-20 Score=205.61 Aligned_cols=176 Identities=18% Similarity=0.122 Sum_probs=132.8
Q ss_pred eeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh------------------hcceeecCCCCChhhH-------
Q 001570 744 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIPYF------- 794 (1051)
Q Consensus 744 vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la------------------~~G~~vpa~~~~i~~~------- 794 (1051)
+++++++ |++++|+||||||||||||+|+|+.-.. +.-.+|+|.++.+|++
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Nia 97 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIA 97 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhh
Confidence 9999999 8999999999999999999999997211 2234889998887762
Q ss_pred -----------------HHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHH
Q 001570 795 -----------------DAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSII 856 (1051)
Q Consensus 795 -----------------d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~il 856 (1051)
..+...+++.+.+.+..+.+|+|++|... ..+.+.+|+++|||||.|+||..-+..+...+.
T Consensus 98 f~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~ 177 (338)
T COG3839 98 FGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIK 177 (338)
T ss_pred hhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHH
Confidence 23445567888888999999999998544 466799999999999999999999999977777
Q ss_pred HHHHcCCcEEEEeccChhhhh-CcccccccccceeEEEEeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHH
Q 001570 857 ETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETII 929 (1051)
Q Consensus 857 e~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~vi 929 (1051)
+..++.|.|+|++|||..++. ++++..-+..+.+ ..-|++...|.-..+. .||...|.|+--+
T Consensus 178 ~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i---~Q~g~p~ely~~P~n~-------fVA~FiG~p~mn~ 241 (338)
T COG3839 178 KLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRI---QQVGTPLELYERPANL-------FVAGFIGSPPMNF 241 (338)
T ss_pred HHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCee---eecCChHHHhhCccch-------hhhhhcCChhhcC
Confidence 755667999999999987765 4444333322332 2235555555443333 6888899876544
No 38
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=6.2e-20 Score=197.87 Aligned_cols=232 Identities=14% Similarity=0.100 Sum_probs=147.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCCChhhH-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIPYF- 794 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~~i~~~- 794 (1051)
...+++||++ |+.++++|||||||||+||+|+|+... ..-..||+|+++.++++
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~Hmt 93 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMT 93 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccch
Confidence 4567778888 899999999999999999999999711 11223788888766542
Q ss_pred --HH-----------------------HHHhcCCCCCccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 795 --DA-----------------------IMLHMKSYDSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 795 --d~-----------------------i~~~~~~~d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
|+ ++.-+.+++...+....+|+|++|. +.+.+.+.+|+++|||||+++||..-+
T Consensus 94 Va~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr 173 (345)
T COG1118 94 VADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 173 (345)
T ss_pred HHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHH
Confidence 22 3333444555556677889999885 445667999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccChhhhh-CcccccccccceeEEEEeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHH
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPET 927 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~ 927 (1051)
..+...+.+...+.|.|++|+|||.+++. ++++...+.++.+......+ ..|.-. ..+ .++...|
T Consensus 174 ~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~---ev~~~P----~s~---fV~~f~G---- 239 (345)
T COG1118 174 KELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPD---EVYDHP----ASR---FVARFLG---- 239 (345)
T ss_pred HHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHH---HHhcCC----Ccc---ceecccc----
Confidence 99977777766677999999999998874 56655555566554443222 222211 111 2233333
Q ss_pred HHHHHHHHHHHhcccchhhccccCC-CCcccCcceeEEEecCCccceecc-cCCccchhhhhcc
Q 001570 928 IIQRAEDLYIACGVNCVMIAAREQP-PPSIIGASCVYVMLRPDKKLYIGQ-TDDLDGRIRAHRG 989 (1051)
Q Consensus 928 vi~rA~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~r~~~~r~ 989 (1051)
....+-.........++..... +........+++..||-+...... .+.+.+.+.+.+.
T Consensus 240 ---~~n~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~vRphd~~l~~~~~~~~p~~V~~~~~ 300 (345)
T COG1118 240 ---EVNVLPGEVILGQLQVGAHDIGLPLQPLPDGKADLYVRPHDVELLDHGRNTLPATVERVSP 300 (345)
T ss_pred ---cceeccceeecceEEecceeccCCCccCCCCceeEEeccceeEeecCCCCcceEEEEEEec
Confidence 1111111122222233333332 333446667888888876544332 4566666655554
No 39
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.81 E-value=1.3e-19 Score=204.34 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=112.7
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------------------hhcceeecCCCCChhh----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIPY---- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------------------a~~G~~vpa~~~~i~~---- 793 (1051)
++.+++++|| |++++|+||||||||||+|+|+|++.. .+...++|+....++.
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 4578999998 899999999999999999999998621 1112367766432211
Q ss_pred --------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHH
Q 001570 794 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIA 852 (1051)
Q Consensus 794 --------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~ 852 (1051)
++.++..+++.+......+++|+||+|... +.+.+.+|+++||||||+||||.....+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l- 163 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI- 163 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-
Confidence 234566677776677778899999998554 4667999999999999999999888887
Q ss_pred HHHHHHHHcCCcEEEEeccChhhhh-CcccccccccceeE
Q 001570 853 GSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMG 891 (1051)
Q Consensus 853 ~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~~ 891 (1051)
+.+++.+++.|.|+|++||+++.+. ++++...+..+.+.
T Consensus 164 ~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~ 203 (302)
T TIGR01188 164 WDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRII 203 (302)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 5566666666999999999998765 55554444444443
No 40
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.81 E-value=1.7e-19 Score=182.36 Aligned_cols=143 Identities=18% Similarity=0.187 Sum_probs=115.3
Q ss_pred cccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhH-----------------------HhhhcceeecCCC
Q 001570 736 FDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-----------------------LLGICGLMVPAES 788 (1051)
Q Consensus 736 ~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~-----------------------~la~~G~~vpa~~ 788 (1051)
..|.++..+++|+|| |+++-|+||+|||||||||.|++.. ++.+....|+|+.
T Consensus 9 k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~ 88 (223)
T COG2884 9 KAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDF 88 (223)
T ss_pred hhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeec
Confidence 345677779999999 8999999999999999999999976 1222223677765
Q ss_pred CChhh------------------------HHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCC
Q 001570 789 ASIPY------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGT 843 (1051)
Q Consensus 789 ~~i~~------------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~Gl 843 (1051)
..++. +...+..+|+.+....-.+.+|+|.+|...| .+.+.+|.++|-||||.+|
T Consensus 89 rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNL 168 (223)
T COG2884 89 RLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168 (223)
T ss_pred cccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCC
Confidence 44321 3356677888888888889999887775554 6669999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCc
Q 001570 844 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 879 (1051)
Q Consensus 844 D~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~ 879 (1051)
||.....| ..+++.+.+.|.||+++|||.++.+-.
T Consensus 169 Dp~~s~~i-m~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 169 DPDLSWEI-MRLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred ChHHHHHH-HHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 99998888 778888999999999999999997643
No 41
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.81 E-value=4.1e-20 Score=188.15 Aligned_cols=147 Identities=20% Similarity=0.248 Sum_probs=112.2
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhh--------------------cceeecCCCC---C----
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------CGLMVPAESA---S---- 790 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~--------------------~G~~vpa~~~---~---- 790 (1051)
..++.|+|| |++++|.||||+||||+||+|+.++...+ +|. ++.+.. .
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV-l~~e~glY~RlT~r 93 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV-LFGERGLYARLTAR 93 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce-ecCCcChhhhhhHH
Confidence 347899999 89999999999999999999999985433 221 111111 0
Q ss_pred --hhh---------------HHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHHHHH
Q 001570 791 --IPY---------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIA 852 (1051)
Q Consensus 791 --i~~---------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~~l~ 852 (1051)
+.+ .+.+..++++.+.+++....||.||+|...| .+.+++|++++||||++|||......+
T Consensus 94 Enl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~- 172 (245)
T COG4555 94 ENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKF- 172 (245)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHH-
Confidence 011 2345566677778888889999999995555 566999999999999999999887777
Q ss_pred HHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 853 GSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 853 ~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
..++..+++.|.++||+||.++.++ +++...-+..+++
T Consensus 173 ~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gev 211 (245)
T COG4555 173 HDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEV 211 (245)
T ss_pred HHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcE
Confidence 7788888888999999999998776 7665555444444
No 42
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.80 E-value=2.7e-19 Score=190.26 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=105.8
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------hhcceeecCCCC--Ch--h----
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------GICGLMVPAESA--SI--P---- 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------a~~G~~vpa~~~--~i--~---- 792 (1051)
+.++++++| |++++|+||||||||||||+|+|+... .+...|+|++.. .+ .
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~ 92 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREE 92 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHH
Confidence 578999998 899999999999999999999998621 112236676631 11 1
Q ss_pred -------------hHHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 001570 793 -------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 858 (1051)
Q Consensus 793 -------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~ 858 (1051)
.+.+++..+++.+........+|+|++|...+ .+.+.+|+++||||||+|||+.....+ ..++..
T Consensus 93 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~ 171 (205)
T cd03226 93 LLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV-GELIRE 171 (205)
T ss_pred HhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH-HHHHHH
Confidence 12345666777776777788999999985554 567899999999999999999888887 555566
Q ss_pred HHcCCcEEEEeccChhhhh-Cccc
Q 001570 859 LDNIGCLGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 859 L~~~g~~vi~~TH~~el~~-l~~~ 881 (1051)
+++.|.++|++||+++.+. ++++
T Consensus 172 ~~~~~~tii~~sH~~~~~~~~~d~ 195 (205)
T cd03226 172 LAAQGKAVIVITHDYEFLAKVCDR 195 (205)
T ss_pred HHHCCCEEEEEeCCHHHHHHhCCE
Confidence 6566899999999998764 4543
No 43
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.80 E-value=2.3e-19 Score=192.29 Aligned_cols=138 Identities=15% Similarity=0.137 Sum_probs=104.6
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------hhcceeecCCCCChh--
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP-- 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------a~~G~~vpa~~~~i~-- 792 (1051)
+.++++++| |++++|+||||||||||+|+|+|+... .+...|+|++...++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR 95 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence 469999998 899999999999999999999998611 112346676643221
Q ss_pred -h---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 793 -Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 793 -~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
. +..++..+++.+...+...++|+|++|... +.+.+.+|+++||||||+|||+....
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 175 (216)
T TIGR00960 96 TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSR 175 (216)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 1 123455667766667777899999988554 46679999999999999999998888
Q ss_pred HHHHHHHHHHHcCCcEEEEeccChhhhh-Ccc
Q 001570 850 CIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 880 (1051)
Q Consensus 850 ~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~ 880 (1051)
.+. .++..+++.|.++|++||+.+++. +++
T Consensus 176 ~l~-~~l~~~~~~~~tii~vsH~~~~~~~~~d 206 (216)
T TIGR00960 176 DIM-RLFEEFNRRGTTVLVATHDINLVETYRH 206 (216)
T ss_pred HHH-HHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 885 455556666899999999998764 444
No 44
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.80 E-value=2.4e-19 Score=192.40 Aligned_cols=138 Identities=16% Similarity=0.158 Sum_probs=103.9
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------------hhcceeecCCCCChh-
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASIP- 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------------a~~G~~vpa~~~~i~- 792 (1051)
+.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 579999998 899999999999999999999998611 112345665532211
Q ss_pred -----------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 793 -----------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 793 -----------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
.++.++..+++.+...+...++|+|++|... +.+.+.+|+++||||||+|||+...
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (218)
T cd03255 97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176 (218)
T ss_pred CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence 1233555667766666777899999988544 5667999999999999999999888
Q ss_pred HHHHHHHHHHHHc-CCcEEEEeccChhhhhCcc
Q 001570 849 TCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPL 880 (1051)
Q Consensus 849 ~~l~~~ile~L~~-~g~~vi~~TH~~el~~l~~ 880 (1051)
..+ ..++..+.+ .|.++|++||+.+.+..++
T Consensus 177 ~~l-~~~l~~~~~~~~~tii~~sH~~~~~~~~d 208 (218)
T cd03255 177 KEV-MELLRELNKEAGTTIVVVTHDPELAEYAD 208 (218)
T ss_pred HHH-HHHHHHHHHhcCCeEEEEECCHHHHhhhc
Confidence 887 555555554 5899999999998766443
No 45
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=4.1e-19 Score=190.99 Aligned_cols=144 Identities=16% Similarity=0.157 Sum_probs=105.7
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------hhcceeecCCCCChh---h------
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------GICGLMVPAESASIP---Y------ 793 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------a~~G~~vpa~~~~i~---~------ 793 (1051)
+.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++ .
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 96 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL 96 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHH
Confidence 579999998 899999999999999999999998621 112236666532211 1
Q ss_pred ---------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Q 001570 794 ---------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 857 (1051)
Q Consensus 794 ---------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile 857 (1051)
+..++..+++.+...+..+.+|+|++|... +.+.+.+|+++||||||+|||+.....+...+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 176 (220)
T cd03293 97 GLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLD 176 (220)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 123455667766666777899999988554 5667899999999999999999888888555544
Q ss_pred HHHcCCcEEEEeccChhhh-hCccccccc
Q 001570 858 TLDNIGCLGIVSTHLHGIF-SLPLKIKNA 885 (1051)
Q Consensus 858 ~L~~~g~~vi~~TH~~el~-~l~~~~~~i 885 (1051)
..++.|.++|++||+.+.+ ..+++...+
T Consensus 177 ~~~~~~~tiii~sH~~~~~~~~~d~i~~l 205 (220)
T cd03293 177 IWRETGKTVLLVTHDIDEAVFLADRVVVL 205 (220)
T ss_pred HHHHcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 4345689999999999865 445543333
No 46
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.1e-19 Score=187.86 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=121.4
Q ss_pred ccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhH------------------------HhhhcceeecCCC
Q 001570 737 DAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS------------------------LLGICGLMVPAES 788 (1051)
Q Consensus 737 ~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~------------------------~la~~G~~vpa~~ 788 (1051)
.+++++.++++|+| |++++|+||+|||||||||+|+|+. ...++| |++|.+
T Consensus 12 ~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iG-mIfQ~~ 90 (258)
T COG3638 12 TYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIG-MIFQQF 90 (258)
T ss_pred ecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhce-eEeccC
Confidence 34688999999999 8999999999999999999999986 233455 566665
Q ss_pred CChhh-----------------H---------------HHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEE
Q 001570 789 ASIPY-----------------F---------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVL 835 (1051)
Q Consensus 789 ~~i~~-----------------~---------------d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlL 835 (1051)
..++. + -..++++|+.+......+++|+|++|...| .+.+++|+++|
T Consensus 91 nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiIL 170 (258)
T COG3638 91 NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIIL 170 (258)
T ss_pred CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEe
Confidence 44321 1 124567788888888889999999886655 55689999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-CcccccccccceeEEE
Q 001570 836 IDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTE 893 (1051)
Q Consensus 836 LDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~~~~ 893 (1051)
-|||+++|||.....++..+.+.-.+.|.|+|+..|+.+++. ++++...+..+.+.++
T Consensus 171 ADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 171 ADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999888855555555567999999999999985 5555556666655444
No 47
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=5.4e-19 Score=190.05 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=108.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------------------hhcceeecCCCCChh-----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP----- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------------------a~~G~~vpa~~~~i~----- 792 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... .+.-.|+|++...++
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGW 91 (220)
T ss_pred CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHH
Confidence 4578999998 899999999999999999999998621 011236666543221
Q ss_pred -------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHH
Q 001570 793 -------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIA 852 (1051)
Q Consensus 793 -------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~ 852 (1051)
.++.++..+++.+........+|+|++|... +.+.+.+|+++||||||+|||+.....+.
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~ 171 (220)
T cd03265 92 ENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW 171 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH
Confidence 0123455667766666777889999988544 56679999999999999999998888874
Q ss_pred HHHHHHHHc-CCcEEEEeccChhhhh-Cccccccccccee
Q 001570 853 GSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 853 ~~ile~L~~-~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
.+++.+.+ .|.++|++||+.+.+. .+++...+.++.+
T Consensus 172 -~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i 210 (220)
T cd03265 172 -EYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRI 210 (220)
T ss_pred -HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 44445554 4899999999998764 4554444444443
No 48
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.79 E-value=4.4e-19 Score=200.01 Aligned_cols=150 Identities=17% Similarity=0.135 Sum_probs=110.7
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------------------hhcceeecCCCCChh---h-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP---Y- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------------------a~~G~~vpa~~~~i~---~- 793 (1051)
+..+++++|| |++++|+||||||||||||+|+|+... .+...|+|+....++ .
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 95 (303)
T TIGR01288 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVR 95 (303)
T ss_pred CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHH
Confidence 4679999999 899999999999999999999998621 112336776643221 1
Q ss_pred --------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHH
Q 001570 794 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIA 852 (1051)
Q Consensus 794 --------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~ 852 (1051)
++.++..+++.+......+++|+||+|... +.+.+.+|+++||||||+|||+.....+
T Consensus 96 e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l- 174 (303)
T TIGR01288 96 ENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI- 174 (303)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-
Confidence 122344556666566777899999998554 4666899999999999999999888888
Q ss_pred HHHHHHHHcCCcEEEEeccChhhhh-CcccccccccceeE
Q 001570 853 GSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMG 891 (1051)
Q Consensus 853 ~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~~ 891 (1051)
+.++..+.+.|.|+|++||+++++. ++++...+..+.+.
T Consensus 175 ~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~ 214 (303)
T TIGR01288 175 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI 214 (303)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 5555566667999999999998764 56554444444443
No 49
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.79 E-value=4.9e-19 Score=189.34 Aligned_cols=136 Identities=18% Similarity=0.222 Sum_probs=102.5
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------hhcceeecCCCCChh-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------a~~G~~vpa~~~~i~- 792 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... .+...++|++...++
T Consensus 13 ~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (214)
T cd03292 13 GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD 92 (214)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC
Confidence 3579999999 899999999999999999999998611 012346666543221
Q ss_pred --h---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 793 --Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 793 --~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
. ++.++..+++.+.......++|+|++|... +.+.+.+|+++||||||+|||+...
T Consensus 93 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 172 (214)
T cd03292 93 RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT 172 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 1 123455566665556667889999988544 5667999999999999999999888
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccChhhhh
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
..+ ..+++.+.+.|.++|++||+.+.+.
T Consensus 173 ~~~-~~~l~~~~~~~~tiiivtH~~~~~~ 200 (214)
T cd03292 173 WEI-MNLLKKINKAGTTVVVATHAKELVD 200 (214)
T ss_pred HHH-HHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 877 4555556556899999999998765
No 50
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=4.5e-19 Score=203.64 Aligned_cols=152 Identities=15% Similarity=0.084 Sum_probs=115.1
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------hhcceeecCCCCChhh----
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY---- 793 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------a~~G~~vpa~~~~i~~---- 793 (1051)
++..++++++| |++++|+||||||||||||+|+|+... .....||||+.+.+|.
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 45679999998 899999999999999999999998621 0123477777654432
Q ss_pred --------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHH
Q 001570 794 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIA 852 (1051)
Q Consensus 794 --------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~ 852 (1051)
++.++..+++.+...+...++|+|++|... +.+.+.+|+++|||||+++||+..+..+.
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~ 174 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMR 174 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 234556667777777888899999998554 56679999999999999999999999886
Q ss_pred HHHHHHHHcCCcEEEEeccChhhh-hCcccccccccceeE
Q 001570 853 GSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 891 (1051)
Q Consensus 853 ~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~~ 891 (1051)
..+.+..++.|.|+|++||+.+.+ .++++...+..+.+.
T Consensus 175 ~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~ 214 (356)
T PRK11650 175 LEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAE 214 (356)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 666554445699999999998765 456655444444443
No 51
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.79 E-value=5.6e-19 Score=189.04 Aligned_cols=136 Identities=21% Similarity=0.226 Sum_probs=102.7
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------hhcceeecCCCCChh-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------a~~G~~vpa~~~~i~- 792 (1051)
+..+++++|| |++++|+||||||||||+|+|+|+... .+...|+|++...++
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 4578999998 899999999999999999999998611 112246666543221
Q ss_pred --h---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 793 --Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 793 --~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
. +..++..+++.+........+|+|++|... +.+.+.+|+++||||||+|+|+...
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 173 (214)
T TIGR02673 94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence 1 123455567666666677899999988554 4667899999999999999999888
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccChhhhh
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
..+. .+++.+.+.|.++|++||+.+.+.
T Consensus 174 ~~l~-~~l~~~~~~~~tii~~tH~~~~~~ 201 (214)
T TIGR02673 174 ERIL-DLLKRLNKRGTTVIVATHDLSLVD 201 (214)
T ss_pred HHHH-HHHHHHHHcCCEEEEEeCCHHHHH
Confidence 8884 444556556899999999988765
No 52
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=6.7e-19 Score=188.36 Aligned_cols=141 Identities=18% Similarity=0.155 Sum_probs=103.8
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------hhcceeecCCCCChh---h--
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIP---Y-- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------a~~G~~vpa~~~~i~---~-- 793 (1051)
++.+++++|| |++++|+||||||||||+|+|+|+... .+...++|++...++ .
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 91 (213)
T cd03259 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAE 91 (213)
T ss_pred CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHH
Confidence 3578999998 899999999999999999999998621 011236676532211 1
Q ss_pred -------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 001570 794 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAG 853 (1051)
Q Consensus 794 -------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~ 853 (1051)
+..++..+++.+........+|+|++|... +.+.+.+|+++||||||+|||+.....+.
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~- 170 (213)
T cd03259 92 NIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR- 170 (213)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-
Confidence 123455566666666777889999998555 46668999999999999999998888884
Q ss_pred HHHHHHHc-CCcEEEEeccChhhhh-Ccccc
Q 001570 854 SIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 882 (1051)
Q Consensus 854 ~ile~L~~-~g~~vi~~TH~~el~~-l~~~~ 882 (1051)
.++..+.+ .|.++|++||+.+++. .+++.
T Consensus 171 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v 201 (213)
T cd03259 171 EELKELQRELGITTIYVTHDQEEALALADRI 201 (213)
T ss_pred HHHHHHHHHcCCEEEEEecCHHHHHHhcCEE
Confidence 44455544 5899999999988653 44443
No 53
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.79 E-value=5.5e-19 Score=185.69 Aligned_cols=135 Identities=17% Similarity=0.162 Sum_probs=101.9
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----------------------hhcceeecCCCC--Ch
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESA--SI 791 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----------------------a~~G~~vpa~~~--~i 791 (1051)
+++.++++++| |++++|+||||||||||+|+|+|+... .+...++|++.. .+
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 34678999998 899999999999999999999998621 011246676641 11
Q ss_pred --hh---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHH
Q 001570 792 --PY---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 792 --~~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
.. ++.++..+++.+......+.+|+|++|... +.+.+.+|+++||||||+|+|+..
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 162 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAG 162 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 01 123445567766667777899999988554 466789999999999999999988
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccChhh
Q 001570 848 GTCIAGSIIETLDNIGCLGIVSTHLHGI 875 (1051)
Q Consensus 848 ~~~l~~~ile~L~~~g~~vi~~TH~~el 875 (1051)
...+ ..++..+.+.|.++|++||+.++
T Consensus 163 ~~~~-~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 163 REQM-LAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHH-HHHHHHHHHcCCEEEEEeecccc
Confidence 8887 45555566668999999999875
No 54
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.79 E-value=7.1e-19 Score=201.76 Aligned_cols=151 Identities=18% Similarity=0.130 Sum_probs=117.0
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------hhcceeecCCCCChhh-----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY----- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------a~~G~~vpa~~~~i~~----- 793 (1051)
+..++++++| |++++|+||||||||||||+|+|+... .+...|||++.+.+|.
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~e 95 (353)
T TIGR03265 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVAD 95 (353)
T ss_pred CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHH
Confidence 4568999998 899999999999999999999998621 1223477877655432
Q ss_pred -------------------HHHHHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 001570 794 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAG 853 (1051)
Q Consensus 794 -------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~ 853 (1051)
+++++..+++.+...+....+|+|++|.. .+.+.+.+|+++|||||++|||+..+..+..
T Consensus 96 Ni~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~ 175 (353)
T TIGR03265 96 NIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRT 175 (353)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 23456667887777888899999998854 4566799999999999999999999999966
Q ss_pred HHHHHHHcCCcEEEEeccChhhh-hCcccccccccceeE
Q 001570 854 SIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 891 (1051)
Q Consensus 854 ~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~~ 891 (1051)
.+.+..++.|.|+|++||+.+++ .++++...+.++.+.
T Consensus 176 ~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~ 214 (353)
T TIGR03265 176 EIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIE 214 (353)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 66555555699999999999876 466655555555543
No 55
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.79 E-value=9.5e-19 Score=186.47 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=106.3
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------hhcceeecCCCCChh---h--
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIP---Y-- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------a~~G~~vpa~~~~i~---~-- 793 (1051)
+..++++++| |++++|+||||||||||+|+|+|+... .+...++|++...++ .
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 91 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARE 91 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHH
Confidence 4579999998 899999999999999999999998621 112336676643221 1
Q ss_pred ---------------HHHHHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Q 001570 794 ---------------FDAIMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 857 (1051)
Q Consensus 794 ---------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile 857 (1051)
++.++..+++.+...+....+|+|+++.. .+.+.+.+|+++||||||+|||+.....+ ..++.
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~ 170 (208)
T cd03268 92 NLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKEL-RELIL 170 (208)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH-HHHHH
Confidence 22345556666666667788999998854 45667899999999999999999888888 45555
Q ss_pred HHHcCCcEEEEeccChhhhh-Ccccccc
Q 001570 858 TLDNIGCLGIVSTHLHGIFS-LPLKIKN 884 (1051)
Q Consensus 858 ~L~~~g~~vi~~TH~~el~~-l~~~~~~ 884 (1051)
.+++.|.++|++||+.+++. .+++...
T Consensus 171 ~~~~~~~tii~~tH~~~~~~~~~d~v~~ 198 (208)
T cd03268 171 SLRDQGITVLISSHLLSEIQKVADRIGI 198 (208)
T ss_pred HHHHCCCEEEEEcCCHHHHHHhcCEEEE
Confidence 56557899999999998764 4554333
No 56
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.78 E-value=7.4e-19 Score=187.65 Aligned_cols=136 Identities=16% Similarity=0.157 Sum_probs=102.6
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCC-Ch---hh
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA-SI---PY 793 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~-~i---~~ 793 (1051)
+.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+... .+ ..
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~ 93 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV 93 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence 578999998 899999999999999999999998621 112246676531 11 11
Q ss_pred ---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHH
Q 001570 794 ---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCI 851 (1051)
Q Consensus 794 ---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l 851 (1051)
+..++..+++.+...+..+.+|+|++|... +.+.+.+|+++||||||+|||+.....+
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 173 (211)
T cd03225 94 EEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173 (211)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 123455567766667778899999988544 5667899999999999999999888888
Q ss_pred HHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 852 AGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 852 ~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
.. ++..+.+.|.++|++||+.+++..
T Consensus 174 ~~-~l~~~~~~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 174 LE-LLKKLKAEGKTIIIVTHDLDLLLE 199 (211)
T ss_pred HH-HHHHHHHcCCEEEEEeCCHHHHHH
Confidence 54 445555558999999999987653
No 57
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.78 E-value=1.2e-18 Score=191.84 Aligned_cols=150 Identities=14% Similarity=0.112 Sum_probs=110.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------------hcceeecCCCCChh---------
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMVPAESASIP--------- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------------~~G~~vpa~~~~i~--------- 792 (1051)
++.++++++| |++++|+||||||||||+|+|+|+.... +...|+|+....++
T Consensus 24 ~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 103 (257)
T PRK11247 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVG 103 (257)
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHH
Confidence 4679999999 8999999999999999999999986211 11236666543221
Q ss_pred ---------hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC
Q 001570 793 ---------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 862 (1051)
Q Consensus 793 ---------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~ 862 (1051)
.+..++..+++.+......+.+|+|++|... +.+.+.+|+++||||||+|||+.....+...+.+..++.
T Consensus 104 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~ 183 (257)
T PRK11247 104 LGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH 183 (257)
T ss_pred hcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 1234556677776667778899999998554 466689999999999999999988888855554444556
Q ss_pred CcEEEEeccChhhh-hCccccccccccee
Q 001570 863 GCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 863 g~~vi~~TH~~el~-~l~~~~~~i~~~~~ 890 (1051)
|.++|++||+.+++ ..+++...+.++.+
T Consensus 184 ~~tviivsHd~~~~~~~~d~i~~l~~G~i 212 (257)
T PRK11247 184 GFTVLLVTHDVSEAVAMADRVLLIEEGKI 212 (257)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 89999999999875 45554444444443
No 58
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.1e-18 Score=200.05 Aligned_cols=151 Identities=13% Similarity=0.081 Sum_probs=115.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh------------------hcceeecCCCCChhh-----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIPY----- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la------------------~~G~~vpa~~~~i~~----- 793 (1051)
+..++++++| |++++|+||||||||||||+|+|+.... +.-.+||++.+.+|.
T Consensus 18 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~e 97 (351)
T PRK11432 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGE 97 (351)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHH
Confidence 4678999998 8999999999999999999999997211 122377777665432
Q ss_pred -------------------HHHHHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 001570 794 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAG 853 (1051)
Q Consensus 794 -------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~ 853 (1051)
++.++..+++.+...+....+|+|++|.. .+.+.+.+|+++|||||++|||+..+..+..
T Consensus 98 Ni~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~ 177 (351)
T PRK11432 98 NVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMRE 177 (351)
T ss_pred HHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 12345556776666777889999998854 4566799999999999999999999999865
Q ss_pred HHHHHHHcCCcEEEEeccChhhh-hCcccccccccceeE
Q 001570 854 SIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 891 (1051)
Q Consensus 854 ~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~~ 891 (1051)
.+.+..++.|.|+|++|||.+++ .++++...+.++.+.
T Consensus 178 ~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~ 216 (351)
T PRK11432 178 KIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIM 216 (351)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 55554445689999999999876 566665555555554
No 59
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.78 E-value=1.2e-18 Score=187.50 Aligned_cols=137 Identities=16% Similarity=0.107 Sum_probs=103.5
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------h-hcceeecCCCCChh-
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------G-ICGLMVPAESASIP- 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------a-~~G~~vpa~~~~i~- 792 (1051)
..++++++| |++++|+||||||||||+|+|+|+... . +...|+|+....++
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 97 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD 97 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence 468999998 899999999999999999999998510 0 12346676642221
Q ss_pred --h---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 793 --Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 793 --~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
. +.+++..+++.+...+...++|+|++|... +.+.+.+|+++||||||+|||+...
T Consensus 98 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 177 (221)
T TIGR02211 98 FTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA 177 (221)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence 1 123455567766667777899999988554 4667899999999999999999888
Q ss_pred HHHHHHHHHHHH-cCCcEEEEeccChhhhhCc
Q 001570 849 TCIAGSIIETLD-NIGCLGIVSTHLHGIFSLP 879 (1051)
Q Consensus 849 ~~l~~~ile~L~-~~g~~vi~~TH~~el~~l~ 879 (1051)
..+. .++..+. +.|.++|++||+.+++..+
T Consensus 178 ~~l~-~~l~~~~~~~~~tii~~tH~~~~~~~~ 208 (221)
T TIGR02211 178 KIIF-DLMLELNRELNTSFLVVTHDLELAKKL 208 (221)
T ss_pred HHHH-HHHHHHHHhcCCEEEEEeCCHHHHhhc
Confidence 8884 4555554 4589999999999887644
No 60
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1e-18 Score=189.81 Aligned_cols=148 Identities=20% Similarity=0.176 Sum_probs=107.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------hhcceeecCCCCChh-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------a~~G~~vpa~~~~i~- 792 (1051)
+..+++++|| |++++|+||||||||||+|+|+|+... .+...++|+....++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (235)
T cd03261 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDS 91 (235)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCC
Confidence 4579999998 899999999999999999999998621 011236676543221
Q ss_pred --h----------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHH
Q 001570 793 --Y----------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 793 --~----------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
. +..++..+++.+...+..+.+|+|++|... +.+.+.+|+++||||||+|||+..
T Consensus 92 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 171 (235)
T cd03261 92 LTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA 171 (235)
T ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 1 122445566666666777899999988555 466789999999999999999988
Q ss_pred HHHHHHHHHHHHHc-CCcEEEEeccChhhhh-Ccccccccccce
Q 001570 848 GTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 848 ~~~l~~~ile~L~~-~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
...+ ..+++.+.+ .|.|+|++||+.+.+. ++++...+.++.
T Consensus 172 ~~~l-~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~ 214 (235)
T cd03261 172 SGVI-DDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGK 214 (235)
T ss_pred HHHH-HHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCe
Confidence 8887 455555554 5899999999998764 454443333333
No 61
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.78 E-value=7.7e-19 Score=201.44 Aligned_cols=151 Identities=15% Similarity=0.087 Sum_probs=115.3
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------h----hhcceeecCCCCCh
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------L----GICGLMVPAESASI 791 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------l----a~~G~~vpa~~~~i 791 (1051)
+++.++++++| |++++|+||||||||||+|+|+|+.. + .+...|||+....+
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 45678999999 89999999999999999999999871 1 22345778775544
Q ss_pred hh------------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHH
Q 001570 792 PY------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETA 846 (1051)
Q Consensus 792 ~~------------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~ 846 (1051)
+. +..++..+++.....+....+|+||+|... +.+.+.+|+++||||||+||||.
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 32 123456667777777888899999998554 56679999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCccccccccccee
Q 001570 847 KGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 847 ~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~ 890 (1051)
.+..+...+.+...+.|.|+||+||+++++ .++++...+..+.+
T Consensus 164 ~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~i 208 (363)
T TIGR01186 164 IRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEI 208 (363)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 999986555554345689999999999875 55665544444444
No 62
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.78 E-value=1.1e-18 Score=182.09 Aligned_cols=142 Identities=14% Similarity=0.155 Sum_probs=106.9
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCC-----------CCChhhHHHHHHhcCCCCC
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE-----------SASIPYFDAIMLHMKSYDS 806 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~-----------~~~i~~~d~i~~~~~~~d~ 806 (1051)
+.++++++| |++++|+||||||||||+++|+|+... ..|...... ...+.++.+++..+++.+.
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~ 90 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHL 90 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhH
Confidence 568999998 899999999999999999999998643 223221110 0124445557778888877
Q ss_pred ccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC-CcEEEEeccChhhh-hCccccc
Q 001570 807 PADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIF-SLPLKIK 883 (1051)
Q Consensus 807 ~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~-g~~vi~~TH~~el~-~l~~~~~ 883 (1051)
.......+|+|+++... +.+.+.+|+++||||||+|+|+.....+ ..+++.+++. +.++|++||+.+.+ +++++.-
T Consensus 91 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~-~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~ 169 (180)
T cd03214 91 ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIEL-LELLRRLARERGKTVVMVLHDLNLAARYADRVI 169 (180)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 77778899999988554 4667999999999999999999887777 4555556554 89999999999876 4555443
Q ss_pred cc
Q 001570 884 NA 885 (1051)
Q Consensus 884 ~i 885 (1051)
.+
T Consensus 170 ~l 171 (180)
T cd03214 170 LL 171 (180)
T ss_pred EE
Confidence 33
No 63
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.3e-18 Score=185.69 Aligned_cols=141 Identities=20% Similarity=0.260 Sum_probs=103.6
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----------------hhcceeecCCCCChh---h----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------GICGLMVPAESASIP---Y---- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----------------a~~G~~vpa~~~~i~---~---- 793 (1051)
++.++++++| |++++|+||||||||||+++|+|+... .....|+|+....++ .
T Consensus 12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 91 (210)
T cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQL 91 (210)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHH
Confidence 4578999998 899999999999999999999998621 111236666543221 1
Q ss_pred -----------------HHHHHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHH
Q 001570 794 -----------------FDAIMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 855 (1051)
Q Consensus 794 -----------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~i 855 (1051)
+++++..+++..........+|+|+++.. .+.+.+.+|+++||||||+|+|+.....+. .+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~-~~ 170 (210)
T cd03269 92 VYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK-DV 170 (210)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HH
Confidence 12344555665555666778999998855 456678999999999999999998888874 45
Q ss_pred HHHHHcCCcEEEEeccChhhhh-Ccccc
Q 001570 856 IETLDNIGCLGIVSTHLHGIFS-LPLKI 882 (1051)
Q Consensus 856 le~L~~~g~~vi~~TH~~el~~-l~~~~ 882 (1051)
++.+.+.|.++|++||+.+++. .+++.
T Consensus 171 l~~~~~~~~tii~~sH~~~~~~~~~d~i 198 (210)
T cd03269 171 IRELARAGKTVILSTHQMELVEELCDRV 198 (210)
T ss_pred HHHHHHCCCEEEEECCCHHHHHHhhhEE
Confidence 5556656899999999998764 44443
No 64
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.78 E-value=1.4e-18 Score=198.14 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=112.6
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------hhcceeecCCCCChhh-
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIPY- 793 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------a~~G~~vpa~~~~i~~- 793 (1051)
..+++|+|| |++++|+||||||||||+|+|+|+... .+...++|++...++.
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~ 97 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC
Confidence 479999999 899999999999999999999998611 1123467776543321
Q ss_pred -----------------------HHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 794 -----------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 794 -----------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
+.+++..+|+.+......+.+|+|++|...+ .+.+++|+++|+||||++||+....
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~ 177 (343)
T TIGR02314 98 TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ 177 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 1245666788777788889999999985554 6679999999999999999999888
Q ss_pred HHHHHHHHHHHc-CCcEEEEeccChhhhh-Cccccccccccee
Q 001570 850 CIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 850 ~l~~~ile~L~~-~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
.+ ..+++.+.+ .|.|+|++||+++.+. ++++...+..+.+
T Consensus 178 ~i-~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~i 219 (343)
T TIGR02314 178 SI-LELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219 (343)
T ss_pred HH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 88 555555654 5899999999999874 5555444444443
No 65
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.1e-18 Score=190.14 Aligned_cols=142 Identities=18% Similarity=0.162 Sum_probs=104.0
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------hhcceeecCCCCChh--
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP-- 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------a~~G~~vpa~~~~i~-- 792 (1051)
+.++++++| |++++|+||||||||||+|+|+|+... .+...|+|++...++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL 93 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence 679999998 899999999999999999999998621 011236666532211
Q ss_pred -h-----------------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCC
Q 001570 793 -Y-----------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICR 841 (1051)
Q Consensus 793 -~-----------------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~ 841 (1051)
. +..++..+++.+.......++|+|++|... +.+.+.+|+++||||||+
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 173 (241)
T cd03256 94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA 173 (241)
T ss_pred cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 1 122344556655556677889999988554 466789999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCcEEEEeccChhhhh-Ccccccc
Q 001570 842 GTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKN 884 (1051)
Q Consensus 842 GlD~~~~~~l~~~ile~L~~-~g~~vi~~TH~~el~~-l~~~~~~ 884 (1051)
|||+.....+ ..+++.+.+ .|.++|++||+++.+. ++++...
T Consensus 174 ~LD~~~~~~l-~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~ 217 (241)
T cd03256 174 SLDPASSRQV-MDLLKRINREEGITVIVSLHQVDLAREYADRIVG 217 (241)
T ss_pred cCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 9999888887 455555554 5899999999998876 5544333
No 66
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.78 E-value=1e-18 Score=196.92 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=112.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------------------hhcceeecCCCCChh-----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP----- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------------------a~~G~~vpa~~~~i~----- 792 (1051)
++.+++++|| |++++|+||||||||||||+|+|+... .+.-.|+|+....++
T Consensus 14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~ 93 (301)
T TIGR03522 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVR 93 (301)
T ss_pred CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHH
Confidence 5679999999 899999999999999999999998611 122346776643221
Q ss_pred -------------------hHHHHHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHH
Q 001570 793 -------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIA 852 (1051)
Q Consensus 793 -------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~ 852 (1051)
.++.++..+++.+...+..+.+|+||+|.. .+.+.+.+|+++||||||+|||+.....+
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l- 172 (301)
T TIGR03522 94 EYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI- 172 (301)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-
Confidence 123345566777667778889999999854 45667999999999999999999888877
Q ss_pred HHHHHHHHcCCcEEEEeccChhhh-hCcccccccccceeE
Q 001570 853 GSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 891 (1051)
Q Consensus 853 ~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~~ 891 (1051)
+.+++.+++ +.|+|++||+++++ +++++...+.++.+.
T Consensus 173 ~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~ 211 (301)
T TIGR03522 173 RNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIV 211 (301)
T ss_pred HHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 556666665 79999999999865 456655555555544
No 67
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2e-18 Score=187.40 Aligned_cols=137 Identities=16% Similarity=0.117 Sum_probs=104.0
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------------hhcceeecCCCCChh-
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASIP- 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------------a~~G~~vpa~~~~i~- 792 (1051)
..+++++|| |++++|+||||||||||+|+|+|+... .+...|+|++...++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD 101 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence 479999999 899999999999999999999998610 012346676643211
Q ss_pred --h---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 793 --Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 793 --~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
. +.+++..+++.+........+|+|++|... +.+.+.+|+++||||||+|||+...
T Consensus 102 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 181 (233)
T PRK11629 102 FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181 (233)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 1 123455667766666777889999988554 4667899999999999999999887
Q ss_pred HHHHHHHHHHHH-cCCcEEEEeccChhhhhCc
Q 001570 849 TCIAGSIIETLD-NIGCLGIVSTHLHGIFSLP 879 (1051)
Q Consensus 849 ~~l~~~ile~L~-~~g~~vi~~TH~~el~~l~ 879 (1051)
..+ ..+++.++ +.|.++|++||+.+.+...
T Consensus 182 ~~l-~~~l~~~~~~~g~tvii~sH~~~~~~~~ 212 (233)
T PRK11629 182 DSI-FQLLGELNRLQGTAFLVVTHDLQLAKRM 212 (233)
T ss_pred HHH-HHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 777 55555564 4689999999999887654
No 68
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=99.78 E-value=8e-18 Score=189.81 Aligned_cols=278 Identities=18% Similarity=0.170 Sum_probs=195.7
Q ss_pred CccceEecCCCccCCCHHHHHHhhhcCCcccHHHHHHHHHhHhhhh-------------hcCCCcHHHHHHHHhcCCCCc
Q 001570 388 PCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV-------------TCSIPEFTCLVKLLELREANH 454 (1051)
Q Consensus 388 ~sLl~v~l~~t~t~mg~r~LR~llL~P~~~sl~~~I~~r~t~mg~~-------------l~~i~dlerL~~~L~~p~a~~ 454 (1051)
.||++. ++.|.|++|.|.||+|++.|+. +.. .|++|++.+..+ +..+||++++..++..+..++
T Consensus 2 ~sL~~~-l~~~~T~~G~r~L~~wl~~Pl~-~~~-~I~~R~~~v~~~~~~~~l~~~l~~~L~~~~Di~~~l~~~~~~~~~~ 78 (308)
T smart00533 2 GSLFEL-LNHTKTPMGKRLLRRWLLQPLL-DLK-EINERLDAVEELVENPELRQKLRQLLKRIPDLERLLSRIERGRASP 78 (308)
T ss_pred CCHHHH-HccCCCcHHHHHHHHHHHhhCC-CHH-HHHHHHHHHHHHHhChHHHHHHHHHHccCCcHHHHHHHHHcCCCCH
Confidence 488888 9999999999999999999999 888 999999998876 788999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhcChHHHHHHHhccCchhhcccchhhHHHhhhHhHHHHHHHHHhhhccCCchhhhccCCCCChh
Q 001570 455 IEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSE 534 (1051)
Q Consensus 455 ~dl~~I~~rL~aV~~l~~~~~l~~~L~~~l~~~~~~~g~~~dlerl~~~~~~~~~~i~~~i~l~~e~p~~~~~~~~I~~~ 534 (1051)
.|+..|...+..+ ..++..+........ ..+..++ ..........+.+.+.. .+.. .-...+.|.++
T Consensus 79 ~el~~l~~~l~~~------~~l~~~l~~~~~~~~--~~~~~~~---~~~~~~~~~~l~~~~~~-~~~~-~~~~~~~i~~~ 145 (308)
T smart00533 79 RDLLRLYDSLEGL------KEIRQLLESLDGPLL--GLLLKVI---LEPLLELLELLLELLND-DDPL-EVNDGGLIKDG 145 (308)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHhcCcHHH--HHHHHhh---ccchHHHHHHHHHHhcc-CCcc-cccCCCeeCCC
Confidence 9999999999999 666666654321100 0001111 01111112222333321 1111 11223677888
Q ss_pred HHhhcchhhhhhhhhcccchhHHHHHHHHHHHHHhhccCchhHHhhhhccccCCCCCchhhhhhhcccceeecccccccc
Q 001570 535 FFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPT 614 (1051)
Q Consensus 535 f~~~lds~~~g~V~~~~~~e~l~elr~l~~~L~~aI~ed~lpi~~re~~~ir~tgg~~~eI~y~~~~~~~~l~Gy~ieV~ 614 (1051)
+++++| ++++..+.+...+.+....+.. ..+....++.|.... ||.++++
T Consensus 146 ~s~~Ld-----------------~lr~~~~~l~~~l~~~~~~~~~-------~~~~~~l~~~~~~~~------g~~i~v~ 195 (308)
T smart00533 146 FDPELD-----------------ELREKLEELEEELEELLKKERE-------ELGIDSLKLGYNKVH------GYYIEVT 195 (308)
T ss_pred CCHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH-------HhCCCceEEeEeccE------EEEEEec
Confidence 888887 5555555554444332211111 112223334444444 7777663
Q ss_pred cccCCCCccccccccccccccCccccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001570 615 VWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVI 694 (1051)
Q Consensus 615 v~~~~~~~~~I~~l~~~~~~~g~~v~~e~f~t~eL~ea~er~~~ae~~a~e~i~eiL~eL~~~L~~~~~~L~~l~~lla~ 694 (1051)
. .....+|+..+..+..+..+ +|.++++.+..+++.+++.++.+....++.++...+.++...+..+...++.
T Consensus 196 ~----~~~~~~~~~~~~~s~s~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~ 268 (308)
T smart00533 196 K----SEAKKVPKDFIRRSSLKNTE---RFTTPELKELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAE 268 (308)
T ss_pred c----hhhccCChHHHHHhhhcccc---eeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23445666445555555544 5788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccccccccCccccc
Q 001570 695 GKALFAHVSEGRRRKWVFPALKDI 718 (1051)
Q Consensus 695 Adal~~~a~~a~~~~~~~P~~~~~ 718 (1051)
+|+++|+|..|...+||+|+++++
T Consensus 269 lD~l~s~a~~a~~~~~~~P~i~~~ 292 (308)
T smart00533 269 LDVLLSLATLAAEGNYVRPEFVDS 292 (308)
T ss_pred HHHHHHHHHHHHHCCCcCCeeCCC
Confidence 999999999999999999999874
No 69
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.78 E-value=1.1e-18 Score=188.95 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=106.6
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCCChh---
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIP--- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~~i~--- 792 (1051)
++.+++++|| |++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (232)
T cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLT 91 (232)
T ss_pred CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCc
Confidence 4578999998 899999999999999999999998621 011235666543221
Q ss_pred h---------------------HHHHHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHH
Q 001570 793 Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTC 850 (1051)
Q Consensus 793 ~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~ 850 (1051)
. ++.++..++..+........+|+|++|.. .+.+.+.+|+++||||||+|||+.....
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 171 (232)
T cd03218 92 VEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD 171 (232)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 1 12344555666666677788999998854 4566789999999999999999988887
Q ss_pred HHHHHHHHHHcCCcEEEEeccChhhh-hCcccccccccc
Q 001570 851 IAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 888 (1051)
Q Consensus 851 l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~ 888 (1051)
+ ..+++.+.+.|.++|++||+.+.+ ..+++...+.++
T Consensus 172 ~-~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 209 (232)
T cd03218 172 I-QKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEG 209 (232)
T ss_pred H-HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 7 555566666789999999998754 445544333333
No 70
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.78 E-value=2.1e-18 Score=187.60 Aligned_cols=140 Identities=18% Similarity=0.170 Sum_probs=104.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh-------------------hcceeecCCCCChh---h-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGLMVPAESASIP---Y- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la-------------------~~G~~vpa~~~~i~---~- 793 (1051)
++.++++++| |++++|+||||||||||+|+|+|+.... +...|+|++...++ .
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~ 92 (236)
T TIGR03864 13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVR 92 (236)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHH
Confidence 4678999998 8999999999999999999999986210 12336666532211 1
Q ss_pred --------------------HHHHHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHH
Q 001570 794 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIA 852 (1051)
Q Consensus 794 --------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~ 852 (1051)
+..++..+++.+........+|+|++|.. .+.+.+.+|+++||||||+|+|+.....+.
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~ 172 (236)
T TIGR03864 93 QNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIV 172 (236)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH
Confidence 12345556666666677789999998854 456679999999999999999998888885
Q ss_pred HHHHHHHH-cCCcEEEEeccChhhhhCccc
Q 001570 853 GSIIETLD-NIGCLGIVSTHLHGIFSLPLK 881 (1051)
Q Consensus 853 ~~ile~L~-~~g~~vi~~TH~~el~~l~~~ 881 (1051)
..+ ..+. +.|.++|++||+.+.+..+++
T Consensus 173 ~~l-~~~~~~~~~tiii~sH~~~~~~~~d~ 201 (236)
T TIGR03864 173 AHV-RALCRDQGLSVLWATHLVDEIEADDR 201 (236)
T ss_pred HHH-HHHHHhCCCEEEEEecChhhHhhCCE
Confidence 544 4454 468999999999988765443
No 71
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.78 E-value=1.1e-18 Score=189.49 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=107.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCCChh---
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIP--- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~~i~--- 792 (1051)
+..++++++| |++++|+||||||||||+|+|+|+... .....|+|+....++
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (236)
T cd03219 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELT 91 (236)
T ss_pred CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCC
Confidence 4568999988 899999999999999999999998621 011236666533211
Q ss_pred -------------------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 793 -------------------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 793 -------------------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.+.+++..+++.+......+++|+|++|... +.+.+.+|+++||||||
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 171 (236)
T cd03219 92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPA 171 (236)
T ss_pred HHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 0123445566666666777889999988544 46678999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
+|||+.....+ ..+++.+.+.|.|+|++||+.+++. .+++...+.++.
T Consensus 172 ~~LD~~~~~~l-~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 220 (236)
T cd03219 172 AGLNPEETEEL-AELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGR 220 (236)
T ss_pred ccCCHHHHHHH-HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 99999888887 4555556657899999999998864 455443433433
No 72
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.78 E-value=1.1e-18 Score=190.35 Aligned_cols=140 Identities=15% Similarity=0.150 Sum_probs=102.6
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------hhcceeecCCCCChh-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------a~~G~~vpa~~~~i~- 792 (1051)
+..+++++|| |++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence 4578999998 899999999999999999999998611 111346666533221
Q ss_pred --h-----------------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 793 --Y-----------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 793 --~-----------------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
. +..++..+++.+........+|+|++|... +.+.+.+|+++||||||
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 173 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1 122344456655556677889999988554 46679999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-cCCcEEEEeccChhhh-hCccc
Q 001570 841 RGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLK 881 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~-~~g~~vi~~TH~~el~-~l~~~ 881 (1051)
+|+|+.....+ ..+++.+. +.|.++|++||+.+.+ +.++.
T Consensus 174 ~~LD~~~~~~l-~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~ 215 (243)
T TIGR02315 174 ASLDPKTSKQV-MDYLKRINKEDGITVIINLHQVDLAKKYADR 215 (243)
T ss_pred ccCCHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 99999888877 45555554 4589999999999876 34443
No 73
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.78 E-value=1.2e-18 Score=202.26 Aligned_cols=151 Identities=18% Similarity=0.155 Sum_probs=114.0
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCCh---h
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASI---P 792 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i---~ 792 (1051)
+++.++++++| |++++|+||||||||||||+|+|++.. ++.-.++|++.... .
T Consensus 14 ~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~t 93 (402)
T PRK09536 14 GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFD 93 (402)
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCC
Confidence 35789999999 899999999999999999999998621 12223666654321 0
Q ss_pred -------------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHH
Q 001570 793 -------------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETA 846 (1051)
Q Consensus 793 -------------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~ 846 (1051)
.++.++..+++.+...+....+|+|++|...+ .+.+++|+++||||||+|||+.
T Consensus 94 v~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~ 173 (402)
T PRK09536 94 VRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173 (402)
T ss_pred HHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 12345566677777777888999999985554 6669999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCcccccccccceeE
Q 001570 847 KGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 891 (1051)
Q Consensus 847 ~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~~ 891 (1051)
....+ ..+++.+.+.|.|+|++||+++++ +++++...+.++.+.
T Consensus 174 ~~~~l-~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv 218 (402)
T PRK09536 174 HQVRT-LELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVR 218 (402)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 88888 566666766789999999999987 456655444444443
No 74
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.78 E-value=1.3e-18 Score=187.03 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=105.7
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------------------hhcceeecCCCCChh---h--
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP---Y-- 793 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------------------a~~G~~vpa~~~~i~---~-- 793 (1051)
+.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++ .
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 94 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVRE 94 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHH
Confidence 679999998 899999999999999999999998621 011236666532221 1
Q ss_pred -------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 001570 794 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAG 853 (1051)
Q Consensus 794 -------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~ 853 (1051)
++.++..+++.+.......++|+|++|... +.+.+.+|+++||||||+|+|+.....+ .
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l-~ 173 (220)
T cd03263 95 HLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI-W 173 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHH-H
Confidence 123455566665556667889999888544 5667999999999999999999888877 4
Q ss_pred HHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 854 SIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 854 ~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
.+++.+++ +.|+|++||+++.+. .+++...+..+.
T Consensus 174 ~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 174 DLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred HHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 55555655 589999999998864 454433333333
No 75
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.78 E-value=1.5e-18 Score=185.61 Aligned_cols=140 Identities=15% Similarity=0.120 Sum_probs=103.5
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh------------------hcceeecCCCCChh---h--
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIP---Y-- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la------------------~~G~~vpa~~~~i~---~-- 793 (1051)
++.++++++| |++++|+||||||||||+|+|+|+.... +...++|+....++ .
T Consensus 12 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (213)
T cd03301 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYD 91 (213)
T ss_pred CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHH
Confidence 3578999998 8999999999999999999999986210 11235665532211 1
Q ss_pred -------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 001570 794 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAG 853 (1051)
Q Consensus 794 -------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~ 853 (1051)
++.++..+++.+........+|+|++|... +.+.+.+|+++||||||+|+|+.....+..
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~ 171 (213)
T cd03301 92 NIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA 171 (213)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 123455667766667777899999988554 466789999999999999999988888854
Q ss_pred HHHHHHH-cCCcEEEEeccChhhhh-Cccc
Q 001570 854 SIIETLD-NIGCLGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 854 ~ile~L~-~~g~~vi~~TH~~el~~-l~~~ 881 (1051)
+++.+. +.|.|+|++||+.+++. .+++
T Consensus 172 -~l~~~~~~~~~tvi~~sH~~~~~~~~~d~ 200 (213)
T cd03301 172 -ELKRLQQRLGTTTIYVTHDQVEAMTMADR 200 (213)
T ss_pred -HHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 444554 45899999999988754 4443
No 76
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.6e-18 Score=188.10 Aligned_cols=147 Identities=13% Similarity=0.132 Sum_probs=107.2
Q ss_pred eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------hhcceeecCCCCChh---
Q 001570 743 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP--- 792 (1051)
Q Consensus 743 ~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------a~~G~~vpa~~~~i~--- 792 (1051)
.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 78999998 899999999999999999999998611 112346676643221
Q ss_pred h---------------------HHHHHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHH
Q 001570 793 Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTC 850 (1051)
Q Consensus 793 ~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~ 850 (1051)
. +..++..+++.+......+++|+|++|.. .+.+.+.+|+++||||||+|||+.....
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~ 178 (233)
T cd03258 99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS 178 (233)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHH
Confidence 1 12344556666666677789999998854 4566799999999999999999988888
Q ss_pred HHHHHHHHHHc-CCcEEEEeccChhhhh-Cccccccccccee
Q 001570 851 IAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 851 l~~~ile~L~~-~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
+.. ++..+.+ .|.++|++||+.+.+. .+++...+.++.+
T Consensus 179 l~~-~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i 219 (233)
T cd03258 179 ILA-LLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219 (233)
T ss_pred HHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 844 4444544 5899999999998764 4554444444443
No 77
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.7e-18 Score=192.58 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=111.3
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCC--Ch--
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA--SI-- 791 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~--~i-- 791 (1051)
++..+++++|| |++++|+||||||||||+++|+|+... .+.-.|+|+... .+
T Consensus 16 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 16 DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 34579999999 899999999999999999999998621 111246776531 11
Q ss_pred hh---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 792 PY---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 792 ~~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
.. ++.++..+++.+...+....+|+|++|...+ .+.+.+|+++||||||+|||+....
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~ 175 (274)
T PRK13647 96 TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQE 175 (274)
T ss_pred cHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHH
Confidence 11 2334555677666677788999999985554 6669999999999999999998888
Q ss_pred HHHHHHHHHHHcCCcEEEEeccChhhh-hCccccccccccee
Q 001570 850 CIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 850 ~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~ 890 (1051)
.+ ..++..+++.|.|+|++||+++.+ +.+++...+.++.+
T Consensus 176 ~l-~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i 216 (274)
T PRK13647 176 TL-MEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRV 216 (274)
T ss_pred HH-HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 88 555555655689999999999986 45665544444444
No 78
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=2.3e-19 Score=182.53 Aligned_cols=153 Identities=19% Similarity=0.190 Sum_probs=116.8
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhH--------------------Hhhhcc-eeecCCCCChh--
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLGICG-LMVPAESASIP-- 792 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~--------------------~la~~G-~~vpa~~~~i~-- 792 (1051)
+++.|.+++|| |+++++.||||+||||.+.+|.|++ ..|+.| .|+||+...+.
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~L 94 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKL 94 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcC
Confidence 56789999999 8999999999999999999999987 134555 38898865431
Q ss_pred -h-----------------------HHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHH
Q 001570 793 -Y-----------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 793 -~-----------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
. ++.++..+.+.......-.++|+|.++...| .+.+.+|+++||||||+|.||..
T Consensus 95 tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPia 174 (243)
T COG1137 95 TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174 (243)
T ss_pred cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchh
Confidence 1 2345555565555556667888888775555 56689999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccChhh-hhCcccccccccceeEEE
Q 001570 848 GTCIAGSIIETLDNIGCLGIVSTHLHGI-FSLPLKIKNAAYKAMGTE 893 (1051)
Q Consensus 848 ~~~l~~~ile~L~~~g~~vi~~TH~~el-~~l~~~~~~i~~~~~~~~ 893 (1051)
-..| ..++.+|+++|..|+++-|+... ..++++.--+..+++.+.
T Consensus 175 V~dI-q~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~ 220 (243)
T COG1137 175 VIDI-QRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAE 220 (243)
T ss_pred HHHH-HHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEec
Confidence 8888 89999999999999999999754 355554434444444433
No 79
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=7.2e-19 Score=180.83 Aligned_cols=138 Identities=18% Similarity=0.230 Sum_probs=104.4
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhH----------------------------HhhhcceeecCC
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS----------------------------LLGICGLMVPAE 787 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~----------------------------~la~~G~~vpa~ 787 (1051)
+++.++++|++ +++++++||+|||||||||++..+. +..+.| +|+|.
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vG-MVFQk 96 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVG-MVFQK 96 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHhe-eeccC
Confidence 57889999999 7999999999999999999999875 112333 67777
Q ss_pred CCChh--hHHHHHHhc-------------------------CCCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCC
Q 001570 788 SASIP--YFDAIMLHM-------------------------KSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEI 839 (1051)
Q Consensus 788 ~~~i~--~~d~i~~~~-------------------------~~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp 839 (1051)
+..+| ++|++..-. ...|.+.+....+|+|++| +..+.+.|.+|+++|||||
T Consensus 97 PnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEP 176 (253)
T COG1117 97 PNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEP 176 (253)
T ss_pred CCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCc
Confidence 65544 233322111 1233444555568888887 4555677999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcc
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 880 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~ 880 (1051)
||+|||.....| ..++..|+ ..-||+++||++..+....
T Consensus 177 tSALDPIsT~kI-EeLi~eLk-~~yTIviVTHnmqQAaRvS 215 (253)
T COG1117 177 TSALDPISTLKI-EELITELK-KKYTIVIVTHNMQQAARVS 215 (253)
T ss_pred ccccCchhHHHH-HHHHHHHH-hccEEEEEeCCHHHHHHHh
Confidence 999999999998 77777787 4689999999999876544
No 80
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.3e-18 Score=187.57 Aligned_cols=146 Identities=17% Similarity=0.123 Sum_probs=111.5
Q ss_pred ccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------------------hcceeecCCCC
Q 001570 735 WFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------ICGLMVPAESA 789 (1051)
Q Consensus 735 ~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------------------~~G~~vpa~~~ 789 (1051)
++.+.++..+++++++ |+.++|+||||||||||+++++|++... +.-.+|+|.+.
T Consensus 10 ~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd 89 (235)
T COG1122 10 SFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPD 89 (235)
T ss_pred EEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcc
Confidence 4445555789999999 8999999999999999999999997321 11234554431
Q ss_pred C--h-----------------------hhHHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCC
Q 001570 790 S--I-----------------------PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGT 843 (1051)
Q Consensus 790 ~--i-----------------------~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~Gl 843 (1051)
. + ..++.++..++..+...+...++|+|++|...| -..+.+|+++||||||+||
T Consensus 90 ~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~L 169 (235)
T COG1122 90 DQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGL 169 (235)
T ss_pred cccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCC
Confidence 1 0 113456777888888899999999998885544 4558999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcC-CcEEEEeccChhhhhC-ccc
Q 001570 844 ETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFSL-PLK 881 (1051)
Q Consensus 844 D~~~~~~l~~~ile~L~~~-g~~vi~~TH~~el~~l-~~~ 881 (1051)
||..+..+ ..++..|++. |.|+|++|||++.+.. +++
T Consensus 170 D~~~~~~l-~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~ 208 (235)
T COG1122 170 DPKGRREL-LELLKKLKEEGGKTIIIVTHDLELVLEYADR 208 (235)
T ss_pred CHHHHHHH-HHHHHHHHhcCCCeEEEEeCcHHHHHhhCCE
Confidence 99888888 5666666655 7999999999998654 443
No 81
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.77 E-value=2.3e-18 Score=186.11 Aligned_cols=138 Identities=16% Similarity=0.124 Sum_probs=102.4
Q ss_pred eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------------hhcceeecCCCCChh--
Q 001570 743 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASIP-- 792 (1051)
Q Consensus 743 ~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------------a~~G~~vpa~~~~i~-- 792 (1051)
.++++++| |++++|+||||||||||+|+|+|+... .+...++|++...++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 58999998 899999999999999999999998610 012346666543221
Q ss_pred -h---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 793 -Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 793 -~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
. +..++..+++.+........+|+|++|...+ .+.+.+|+++||||||+|||+....
T Consensus 104 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 183 (228)
T PRK10584 104 NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD 183 (228)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 1 1234455566655666778899999885554 6668999999999999999998888
Q ss_pred HHHHHHHHHHH-cCCcEEEEeccChhhhhCccc
Q 001570 850 CIAGSIIETLD-NIGCLGIVSTHLHGIFSLPLK 881 (1051)
Q Consensus 850 ~l~~~ile~L~-~~g~~vi~~TH~~el~~l~~~ 881 (1051)
.+ ..++..++ +.|.++|++||+.++...+++
T Consensus 184 ~l-~~~l~~~~~~~~~tii~~sH~~~~~~~~d~ 215 (228)
T PRK10584 184 KI-ADLLFSLNREHGTTLILVTHDLQLAARCDR 215 (228)
T ss_pred HH-HHHHHHHHHhcCCEEEEEecCHHHHHhCCE
Confidence 77 45555554 458999999999988765443
No 82
>PRK10908 cell division protein FtsE; Provisional
Probab=99.77 E-value=2.1e-18 Score=185.73 Aligned_cols=137 Identities=20% Similarity=0.227 Sum_probs=103.5
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------hhcceeecCCCCChh-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------a~~G~~vpa~~~~i~- 792 (1051)
+..++++++| |++++|+||||||||||+|+|+|+... .+...|+|++...++
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 4578999998 899999999999999999999998621 112236676543211
Q ss_pred --h---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 793 --Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 793 --~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
. ++.++..+++.+...+..+.+|+|++|... +.+.+.+|+++||||||+|||+...
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 173 (222)
T PRK10908 94 RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALS 173 (222)
T ss_pred ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 1 123455566666666777899999998555 4666899999999999999999888
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
..+. .++..+.+.+.++|++||+++++..
T Consensus 174 ~~l~-~~l~~~~~~~~tiii~sH~~~~~~~ 202 (222)
T PRK10908 174 EGIL-RLFEEFNRVGVTVLMATHDIGLISR 202 (222)
T ss_pred HHHH-HHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 8885 4555566568999999999987653
No 83
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.5e-18 Score=200.47 Aligned_cols=150 Identities=19% Similarity=0.123 Sum_probs=111.4
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------hhcceeecCCCCChhh-----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY----- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------a~~G~~vpa~~~~i~~----- 793 (1051)
+..+++++|| |++++|+||||||||||||+|+|+... .+...|+|++...++.
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~e 94 (369)
T PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAE 94 (369)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHH
Confidence 4578999998 899999999999999999999998621 0112467776543321
Q ss_pred -------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 001570 794 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAG 853 (1051)
Q Consensus 794 -------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~ 853 (1051)
+..++..+++.+...+...++|+|++|... +.+.+.+|+++||||||+|||+..+..+..
T Consensus 95 ni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~ 174 (369)
T PRK11000 95 NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 174 (369)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 223455667776677778899999998544 566799999999999999999998888855
Q ss_pred HHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 854 SIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 854 ~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
.+.+...+.|.|+|++||+.+++. ++++...+.++.+
T Consensus 175 ~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 175 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred HHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 554444445899999999998654 5555444444443
No 84
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2e-18 Score=191.91 Aligned_cols=149 Identities=13% Similarity=0.097 Sum_probs=109.1
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCC--Ch-
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESA--SI- 791 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~--~i- 791 (1051)
++..++++++| |++++|+||||||||||||+|+|+... .....++|+... ..
T Consensus 13 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 13 DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 34569999999 899999999999999999999998621 011235666532 11
Q ss_pred -hh---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 792 -PY---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 792 -~~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
.. +..++..+++.+........+|+|++|...+ .+.+.+|+++||||||+|||+...
T Consensus 93 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~ 172 (274)
T PRK13644 93 RTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG 172 (274)
T ss_pred chHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 11 1234455666666667778999999985554 567999999999999999999887
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccce
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 889 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~ 889 (1051)
..+ ..+++.+++.|.|+|++||+++.+..+++...+..+.
T Consensus 173 ~~l-~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~ 212 (274)
T PRK13644 173 IAV-LERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGK 212 (274)
T ss_pred HHH-HHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCE
Confidence 777 5556666667999999999999876555444433443
No 85
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.77 E-value=2.1e-18 Score=183.39 Aligned_cols=138 Identities=14% Similarity=0.087 Sum_probs=103.4
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------------hhcceeecCCCCChh
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASIP 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------------a~~G~~vpa~~~~i~ 792 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... .+...++++....++
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence 4578999998 899999999999999999999998621 011235555432211
Q ss_pred ---h---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHH
Q 001570 793 ---Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 793 ---~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
. +..++..+++.+........+|+|+++... +.+.+.+|+++||||||+|+|+..
T Consensus 90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~ 169 (206)
T TIGR03608 90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKN 169 (206)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHH
Confidence 0 123555667766667777889999888544 566789999999999999999988
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccChhhhhCc
Q 001570 848 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 879 (1051)
Q Consensus 848 ~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~ 879 (1051)
...+ ..+++.+.+.|.++|++||+.++...+
T Consensus 170 ~~~l-~~~l~~~~~~~~tii~~sh~~~~~~~~ 200 (206)
T TIGR03608 170 RDEV-LDLLLELNDEGKTIIIVTHDPEVAKQA 200 (206)
T ss_pred HHHH-HHHHHHHHhcCCEEEEEeCCHHHHhhc
Confidence 8888 555555655689999999999876543
No 86
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.77 E-value=2e-18 Score=184.55 Aligned_cols=140 Identities=18% Similarity=0.165 Sum_probs=103.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----------------------hhcceeecCCCCChh--
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESASIP-- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----------------------a~~G~~vpa~~~~i~-- 792 (1051)
+..++++++| |++++|+||||||||||+|+|+|+... .+...|+|++...++
T Consensus 12 ~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (213)
T cd03262 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL 91 (213)
T ss_pred CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCC
Confidence 3578999988 899999999999999999999998621 112336666543221
Q ss_pred -h----------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 793 -Y----------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 793 -~----------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
. +..++..+++...+.....++|+|++|... +.+.+.+|+++||||||+|||+...
T Consensus 92 t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 171 (213)
T cd03262 92 TVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171 (213)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 1 122445556665566777889999988544 5667899999999999999999887
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccc
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~ 881 (1051)
..+ ..++..+.+.|.++|++||+.+.+. ++++
T Consensus 172 ~~l-~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~ 204 (213)
T cd03262 172 GEV-LDVMKDLAEEGMTMVVVTHEMGFAREVADR 204 (213)
T ss_pred HHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 777 5556666666899999999998764 4443
No 87
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.77 E-value=1.8e-18 Score=198.83 Aligned_cols=150 Identities=17% Similarity=0.125 Sum_probs=113.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhh--------------------cceeecCCCCChhh---
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------CGLMVPAESASIPY--- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~--------------------~G~~vpa~~~~i~~--- 793 (1051)
+..++++++| |++++|+||||||||||||+|+|+..... .-.+|+++.+.++.
T Consensus 17 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv 96 (362)
T TIGR03258 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKV 96 (362)
T ss_pred CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcH
Confidence 4579999998 89999999999999999999999864322 12367776554322
Q ss_pred ---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHH
Q 001570 794 ---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCI 851 (1051)
Q Consensus 794 ---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l 851 (1051)
++.++..+++.+...+...++|+|++|... +.+.+.+|+++|||||++|||+..+..+
T Consensus 97 ~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l 176 (362)
T TIGR03258 97 EDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM 176 (362)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 234566678877788888999999998554 5667999999999999999999998888
Q ss_pred HHHHHHHHHcC--CcEEEEeccChhhh-hCcccccccccceeE
Q 001570 852 AGSIIETLDNI--GCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 891 (1051)
Q Consensus 852 ~~~ile~L~~~--g~~vi~~TH~~el~-~l~~~~~~i~~~~~~ 891 (1051)
...+. .+.+. |.|+|++|||++++ .++++...+..+.+.
T Consensus 177 ~~~l~-~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~ 218 (362)
T TIGR03258 177 REEIA-ALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218 (362)
T ss_pred HHHHH-HHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 55554 45543 89999999999876 456655444454443
No 88
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.77 E-value=2.3e-18 Score=184.87 Aligned_cols=138 Identities=17% Similarity=0.182 Sum_probs=103.5
Q ss_pred eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------------------hhcceeecCCCCChh---h---
Q 001570 743 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP---Y--- 793 (1051)
Q Consensus 743 ~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------------------a~~G~~vpa~~~~i~---~--- 793 (1051)
.++++++| |++++|+||||||||||+|+|+|+... .+...++|++...++ .
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 68999998 899999999999999999999998621 111236666542221 1
Q ss_pred ------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHH
Q 001570 794 ------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGS 854 (1051)
Q Consensus 794 ------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ 854 (1051)
+++++..+++.+...+....+|+|+++... +.+.+.+|+++||||||+|||+.....+ ..
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~~ 177 (218)
T cd03266 99 LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRAL-RE 177 (218)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHH-HH
Confidence 123455667766666777889999888544 5666899999999999999999888887 45
Q ss_pred HHHHHHcCCcEEEEeccChhhhh-Cccc
Q 001570 855 IIETLDNIGCLGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 855 ile~L~~~g~~vi~~TH~~el~~-l~~~ 881 (1051)
+++.+.+.|.++|++||+.+.+. .+++
T Consensus 178 ~l~~~~~~~~tii~~tH~~~~~~~~~d~ 205 (218)
T cd03266 178 FIRQLRALGKCILFSTHIMQEVERLCDR 205 (218)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhcCE
Confidence 55556666899999999998754 4443
No 89
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.77 E-value=1.9e-18 Score=199.35 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=114.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------hhcceeecCCCCChhh-----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY----- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------a~~G~~vpa~~~~i~~----- 793 (1051)
+..++++++| |++++|+||||||||||||+|+|+... .+...|+|++.+.+|.
T Consensus 26 ~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~e 105 (375)
T PRK09452 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFE 105 (375)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHH
Confidence 4578999988 899999999999999999999998721 1123467777654432
Q ss_pred -------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 001570 794 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAG 853 (1051)
Q Consensus 794 -------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~ 853 (1051)
++.++..+++.+...+...++|+|++|... +.+.+.+|+++|||||++|||+..+..+..
T Consensus 106 Ni~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~ 185 (375)
T PRK09452 106 NVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQN 185 (375)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 123455567777777888899999988555 466799999999999999999999888855
Q ss_pred HHHHHHHcCCcEEEEeccChhhh-hCcccccccccceeE
Q 001570 854 SIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 891 (1051)
Q Consensus 854 ~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~~ 891 (1051)
.+.+..++.|.|+|++|||.+++ .++++...+.++.+.
T Consensus 186 ~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~ 224 (375)
T PRK09452 186 ELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIE 224 (375)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 55554555699999999999875 466665555555554
No 90
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.77 E-value=2e-18 Score=185.74 Aligned_cols=147 Identities=16% Similarity=0.118 Sum_probs=104.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCCChhh--
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIPY-- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~~i~~-- 793 (1051)
+..++++++| |++++|+||||||||||+++|+|+... .+...++|+....++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (222)
T cd03224 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELT 91 (222)
T ss_pred CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCc
Confidence 4578999998 899999999999999999999998621 1113366766432221
Q ss_pred -H-------------------HHHHHhc-CCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHH
Q 001570 794 -F-------------------DAIMLHM-KSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCI 851 (1051)
Q Consensus 794 -~-------------------d~i~~~~-~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l 851 (1051)
. ..++..+ +..+........+|+|++|... +.+.+.+|+++||||||+|||+.....+
T Consensus 92 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 171 (222)
T cd03224 92 VEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI 171 (222)
T ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH
Confidence 1 1223333 2344455666789999988554 4666899999999999999999888888
Q ss_pred HHHHHHHHHcCCcEEEEeccChhhh-hCcccccccccc
Q 001570 852 AGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 888 (1051)
Q Consensus 852 ~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~ 888 (1051)
..+++.+.+.|.|+|++||+.+.+ ..+++...+..+
T Consensus 172 -~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 208 (222)
T cd03224 172 -FEAIRELRDEGVTILLVEQNARFALEIADRAYVLERG 208 (222)
T ss_pred -HHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCC
Confidence 455555665789999999999875 445544333333
No 91
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.77 E-value=3.2e-18 Score=177.32 Aligned_cols=124 Identities=17% Similarity=0.168 Sum_probs=90.2
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhc--------------------ceeecCCCCChhhHHHH
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC--------------------GLMVPAESASIPYFDAI 797 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~--------------------G~~vpa~~~~i~~~d~i 797 (1051)
..++++++| |++++|+||||||||||+++|+|+...... ..|++++...++. .+
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~--tv 92 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG--SI 92 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC--cH
Confidence 468899888 899999999999999999999998632211 1133333221110 11
Q ss_pred HHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh
Q 001570 798 MLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 876 (1051)
Q Consensus 798 ~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~ 876 (1051)
...+ +|+|++|.. .+.+.+.+|+++||||||+|+|+.....+ ..++..+.+.|.++|++||+.+..
T Consensus 93 ~~~l------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l-~~~l~~~~~~~~tii~~sh~~~~~ 159 (173)
T cd03246 93 AENI------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERAL-NQAIAALKAAGATRIVIAHRPETL 159 (173)
T ss_pred HHHC------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHH
Confidence 1111 788888754 45667999999999999999999888888 455555666689999999999877
Q ss_pred hCcc
Q 001570 877 SLPL 880 (1051)
Q Consensus 877 ~l~~ 880 (1051)
..++
T Consensus 160 ~~~d 163 (173)
T cd03246 160 ASAD 163 (173)
T ss_pred HhCC
Confidence 6543
No 92
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.8e-18 Score=198.27 Aligned_cols=151 Identities=16% Similarity=0.169 Sum_probs=115.5
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh------------------hcceeecCCCCChhh-----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIPY----- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la------------------~~G~~vpa~~~~i~~----- 793 (1051)
+..++++++| |++++|+||||||||||||+|+|+.... +...|+|++.+.+|.
T Consensus 31 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~e 110 (377)
T PRK11607 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQ 110 (377)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHH
Confidence 4578999998 8999999999999999999999997211 123477877665543
Q ss_pred -------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 001570 794 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAG 853 (1051)
Q Consensus 794 -------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~ 853 (1051)
+..++..+++.+...+....+|+|++|... +.+.+.+|+++|||||++|||+..+..+..
T Consensus 111 Ni~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 190 (377)
T PRK11607 111 NIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQL 190 (377)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 123445557766667777899999988544 566799999999999999999999999877
Q ss_pred HHHHHHHcCCcEEEEeccChhhh-hCcccccccccceeE
Q 001570 854 SIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 891 (1051)
Q Consensus 854 ~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~~ 891 (1051)
.+.+.+++.|.|+|++||+.+++ .++++...+..+.+.
T Consensus 191 ~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~ 229 (377)
T PRK11607 191 EVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFV 229 (377)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEE
Confidence 77776666799999999999875 466655444444443
No 93
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4e-18 Score=195.22 Aligned_cols=149 Identities=15% Similarity=0.165 Sum_probs=110.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------hhcceeecCCCCChh-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------a~~G~~vpa~~~~i~- 792 (1051)
+..+++++|| |++++|+||||||||||+|+|+|+... .+...|+|++...++
T Consensus 17 ~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~ 96 (343)
T PRK11153 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCC
Confidence 3579999999 899999999999999999999998611 112346777643221
Q ss_pred --h---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 793 --Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 793 --~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
. +..++..+++.+...+..+++|+|++|...+ .+.+.+|+++||||||+|||+...
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~ 176 (343)
T PRK11153 97 RTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 1 1234556677766677788999999985554 667899999999999999999888
Q ss_pred HHHHHHHHHHHH-cCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 849 TCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 849 ~~l~~~ile~L~-~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
..+. .++..+. +.|.|+|++||+++.+. ++++...+.++.+
T Consensus 177 ~~l~-~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i 219 (343)
T PRK11153 177 RSIL-ELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219 (343)
T ss_pred HHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8884 4445554 45899999999998764 4555444444443
No 94
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=4.3e-18 Score=188.84 Aligned_cols=147 Identities=17% Similarity=0.084 Sum_probs=107.0
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------------hhcceeecCCCCCh
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASI 791 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------------a~~G~~vpa~~~~i 791 (1051)
++..++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 114 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccC
Confidence 35678999999 899999999999999999999998621 01234666654322
Q ss_pred h---h---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHH
Q 001570 792 P---Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETA 846 (1051)
Q Consensus 792 ~---~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~ 846 (1051)
+ . ++.++..+++.+........+|+|++|... +.+.+.+|+++||||||+|||+.
T Consensus 115 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~ 194 (269)
T cd03294 115 PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPL 194 (269)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 1 1 123455567766667777899999988554 56678999999999999999998
Q ss_pred HHHHHHHHHHHHHH-cCCcEEEEeccChhhh-hCccccccccc
Q 001570 847 KGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKIKNAAY 887 (1051)
Q Consensus 847 ~~~~l~~~ile~L~-~~g~~vi~~TH~~el~-~l~~~~~~i~~ 887 (1051)
....+. .++..+. +.|.++|++||+++.+ .+++....+..
T Consensus 195 ~~~~l~-~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~ 236 (269)
T cd03294 195 IRREMQ-DELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKD 236 (269)
T ss_pred HHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 888884 4444454 4589999999999875 44544333333
No 95
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.3e-18 Score=186.33 Aligned_cols=137 Identities=16% Similarity=0.144 Sum_probs=111.9
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH-----------------------hhhcceeecCCCCChh--
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-----------------------LGICGLMVPAESASIP-- 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~-----------------------la~~G~~vpa~~~~i~-- 792 (1051)
..+++|+|| |++++|+|.+|+|||||+|+|.++.. ..+...+++|++..+.
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr 98 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence 568999999 89999999999999999999999861 2233346777754432
Q ss_pred ----------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 793 ----------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 793 ----------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
.+..+++.+|+.|......+.+|+|++|...| .+.+.+|+++|.||+||+|||....
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~ 178 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ 178 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHH
Confidence 13457778899999999999999999996665 5669999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 850 CIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 850 ~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
.|...+.+.-++.|.||+++||.++..+.
T Consensus 179 sIL~LL~~In~~lglTIvlITHEm~Vvk~ 207 (339)
T COG1135 179 SILELLKDINRELGLTIVLITHEMEVVKR 207 (339)
T ss_pred HHHHHHHHHHHHcCCEEEEEechHHHHHH
Confidence 98555555445679999999999998763
No 96
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.9e-18 Score=190.09 Aligned_cols=149 Identities=15% Similarity=0.069 Sum_probs=110.0
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----------------------hhcceeecCCCC--Ch--
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESA--SI-- 791 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----------------------a~~G~~vpa~~~--~i-- 791 (1051)
+.+++++|| |++++|+||||||||||+|+|+|+... .+...|+|+... .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 99 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE 99 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence 469999999 899999999999999999999998611 112347777631 11
Q ss_pred hh---------------------HHHHHHhcCCC--CCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHH
Q 001570 792 PY---------------------FDAIMLHMKSY--DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 792 ~~---------------------~d~i~~~~~~~--d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
.. ++.++..+++. +........+|+||+|...+ .+.+.+|+++||||||+|||+..
T Consensus 100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~ 179 (287)
T PRK13637 100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179 (287)
T ss_pred cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH
Confidence 11 23455666775 44667788999999985554 56689999999999999999988
Q ss_pred HHHHHHHHHHHHHc-CCcEEEEeccChhhh-hCcccccccccceeE
Q 001570 848 GTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 891 (1051)
Q Consensus 848 ~~~l~~~ile~L~~-~g~~vi~~TH~~el~-~l~~~~~~i~~~~~~ 891 (1051)
...+ ..+++.+++ .|.|+|++||+++++ ..+++...+..+.+.
T Consensus 180 ~~~l-~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~ 224 (287)
T PRK13637 180 RDEI-LNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE 224 (287)
T ss_pred HHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 8888 555555654 589999999999876 456554444444443
No 97
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.76 E-value=3.1e-18 Score=183.23 Aligned_cols=140 Identities=21% Similarity=0.218 Sum_probs=103.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------hhcceeecCCCCC-----hhh---
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------GICGLMVPAESAS-----IPY--- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------a~~G~~vpa~~~~-----i~~--- 793 (1051)
+..++++++| |++++|+||||||||||+|+|+|+... .+...|+|++... ...
T Consensus 11 ~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~ 90 (213)
T cd03235 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDV 90 (213)
T ss_pred CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHH
Confidence 3568999998 899999999999999999999998621 1123366765321 111
Q ss_pred ----------------------HHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHHH
Q 001570 794 ----------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTC 850 (1051)
Q Consensus 794 ----------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~~ 850 (1051)
+..++..+++.+...+...++|+|++|...+ .+.+.+|+++||||||+|||+.....
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 170 (213)
T cd03235 91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQED 170 (213)
T ss_pred HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1234455566555566778899999985554 56689999999999999999988888
Q ss_pred HHHHHHHHHHcCCcEEEEeccChhhhh-Cccc
Q 001570 851 IAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 851 l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~ 881 (1051)
+...+ ..+.+.|.++|++||+.+++. .+++
T Consensus 171 l~~~l-~~~~~~~~tvi~~sH~~~~~~~~~d~ 201 (213)
T cd03235 171 IYELL-RELRREGMTILVVTHDLGLVLEYFDR 201 (213)
T ss_pred HHHHH-HHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 85544 445556899999999998764 4443
No 98
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.76 E-value=4.7e-18 Score=185.26 Aligned_cols=147 Identities=17% Similarity=0.200 Sum_probs=107.0
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----------------------hhcceeecCCCCChh--
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESASIP-- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----------------------a~~G~~vpa~~~~i~-- 792 (1051)
+..++++++| |++++|+||||||||||+++|+|+... .+...|+|+....++
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (240)
T PRK09493 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL 92 (240)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCC
Confidence 4578999998 899999999999999999999998621 011235666532211
Q ss_pred -h----------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 793 -Y----------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 793 -~----------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
. +..++..+++.+......+.+|+|+++... +.+.+.+|+++||||||+|+|+...
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 172 (240)
T PRK09493 93 TALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELR 172 (240)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 0 123445566665566777889999888544 4666899999999999999999888
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccc
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 888 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~ 888 (1051)
..+. .+++.+.+.|.++|++||+.+++. .+++...+.++
T Consensus 173 ~~l~-~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 212 (240)
T PRK09493 173 HEVL-KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKG 212 (240)
T ss_pred HHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 8884 455566666899999999998874 45444333333
No 99
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.76 E-value=3.8e-18 Score=195.76 Aligned_cols=151 Identities=13% Similarity=0.104 Sum_probs=112.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------hhcceeecCCCCChhh-----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY----- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------a~~G~~vpa~~~~i~~----- 793 (1051)
+..++++++| |++++|+||||||||||||+|+|+... .+...|+|++.+.++.
T Consensus 14 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~e 93 (353)
T PRK10851 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFD 93 (353)
T ss_pred CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHH
Confidence 4579999999 899999999999999999999998621 0123367776543321
Q ss_pred -----------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 794 -----------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 794 -----------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
+..++..+++.+...+....+|+|++|... +.+.+.+|+++|||||++|||+..+.
T Consensus 94 ni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~ 173 (353)
T PRK10851 94 NIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRK 173 (353)
T ss_pred HHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 123455667776677778899999998554 46668999999999999999999988
Q ss_pred HHHHHHHHHHHcCCcEEEEeccChhhhh-CcccccccccceeE
Q 001570 850 CIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMG 891 (1051)
Q Consensus 850 ~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~~ 891 (1051)
.+...+.+..++.|.|+|++||+++.+. ++++...+..+.+.
T Consensus 174 ~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~ 216 (353)
T PRK10851 174 ELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIE 216 (353)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 8855555544445899999999998754 55554444444443
No 100
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=3.3e-18 Score=186.34 Aligned_cols=147 Identities=14% Similarity=0.093 Sum_probs=104.8
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh------------------hcceeecCCCCChh---h--
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIP---Y-- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la------------------~~G~~vpa~~~~i~---~-- 793 (1051)
+..++++++| |++++|+||||||||||+|+|+|+.... +...|+|+....++ .
T Consensus 14 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 93 (239)
T cd03296 14 DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFD 93 (239)
T ss_pred CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHH
Confidence 4679999998 8999999999999999999999986210 11235666532211 1
Q ss_pred -----------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 794 -----------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 794 -----------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
++.++..+++.+.......++|+|++|... +.+.+.+|+++||||||+|+|+....
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~ 173 (239)
T cd03296 94 NVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 173 (239)
T ss_pred HHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 123345556655556667889999988555 46668999999999999999998888
Q ss_pred HHHHHHHHHHHc-CCcEEEEeccChhhh-hCcccccccccc
Q 001570 850 CIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYK 888 (1051)
Q Consensus 850 ~l~~~ile~L~~-~g~~vi~~TH~~el~-~l~~~~~~i~~~ 888 (1051)
.+ ..+++.+.+ .|.|+|++||+.+.+ ..+++...+..+
T Consensus 174 ~l-~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G 213 (239)
T cd03296 174 EL-RRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKG 213 (239)
T ss_pred HH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 87 455555554 489999999999865 345443333333
No 101
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.76 E-value=3.1e-18 Score=185.36 Aligned_cols=147 Identities=17% Similarity=0.137 Sum_probs=104.0
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCCChhh--
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIPY-- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~~i~~-- 793 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|++...++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (230)
T TIGR03410 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLT 91 (230)
T ss_pred CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCc
Confidence 4578999998 899999999999999999999998621 1123467776543321
Q ss_pred -H------------------HHHHHhcC-CCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHH
Q 001570 794 -F------------------DAIMLHMK-SYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIA 852 (1051)
Q Consensus 794 -~------------------d~i~~~~~-~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~ 852 (1051)
. +.++..++ ..+........+|+|+++... +.+.+.+|+++||||||+|||+.....+.
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~ 171 (230)
T TIGR03410 92 VEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG 171 (230)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 1 11222232 233445566788999888554 46668999999999999999998888884
Q ss_pred HHHHHHHHc-CCcEEEEeccChhhhh-Ccccccccccc
Q 001570 853 GSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYK 888 (1051)
Q Consensus 853 ~~ile~L~~-~g~~vi~~TH~~el~~-l~~~~~~i~~~ 888 (1051)
.++..+.+ .|.|+|++||+++++. .+++...+..+
T Consensus 172 -~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g 208 (230)
T TIGR03410 172 -RVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERG 208 (230)
T ss_pred -HHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 55555554 4899999999998765 45544333333
No 102
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.9e-18 Score=186.88 Aligned_cols=141 Identities=14% Similarity=0.162 Sum_probs=103.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------------hcceeecCCCCChh---h-----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMVPAESASIP---Y----- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------------~~G~~vpa~~~~i~---~----- 793 (1051)
+..++++++| |++++|+||||||||||+|+|+|+.... ....|+|+....++ .
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~ 92 (255)
T PRK11248 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVA 92 (255)
T ss_pred CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHH
Confidence 4578999998 8999999999999999999999986211 01235666532211 1
Q ss_pred ----------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHH
Q 001570 794 ----------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSII 856 (1051)
Q Consensus 794 ----------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~il 856 (1051)
+..++..+++.+........+|+|+++... +.+.+.+|+++||||||+|||+.....+ ..++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~L 171 (255)
T PRK11248 93 FGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM-QTLL 171 (255)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHH
Confidence 123455666665566677889999988544 4666899999999999999999888887 4455
Q ss_pred HHH-HcCCcEEEEeccChhhhh-Ccccc
Q 001570 857 ETL-DNIGCLGIVSTHLHGIFS-LPLKI 882 (1051)
Q Consensus 857 e~L-~~~g~~vi~~TH~~el~~-l~~~~ 882 (1051)
..+ ++.|.++|++||+.+.+. .+++.
T Consensus 172 ~~~~~~~g~tviivsH~~~~~~~~~d~i 199 (255)
T PRK11248 172 LKLWQETGKQVLLITHDIEEAVFMATEL 199 (255)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 555 445899999999998764 44443
No 103
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.76 E-value=5.5e-18 Score=184.35 Aligned_cols=146 Identities=12% Similarity=0.080 Sum_probs=103.9
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------------------hhcceeec-CCCCChh---
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVP-AESASIP--- 792 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------------------a~~G~~vp-a~~~~i~--- 792 (1051)
+++.++++++| |++++|+||||||||||+|+|+|+... .+...|+| +....++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~t 111 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLP 111 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCc
Confidence 45679999999 899999999999999999999998621 01123555 3221111
Q ss_pred h---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHH
Q 001570 793 Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTC 850 (1051)
Q Consensus 793 ~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~ 850 (1051)
. ++.++..+++.+........+|+|+++... +.+.+.+|+++||||||+|||+.....
T Consensus 112 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 191 (236)
T cd03267 112 VIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQEN 191 (236)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 1 122344556665566677889999988554 466789999999999999999988888
Q ss_pred HHHHHHHHHHcCCcEEEEeccChhhh-hCccccccc
Q 001570 851 IAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNA 885 (1051)
Q Consensus 851 l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i 885 (1051)
+...+.+...+.+.++|++||+.+++ .++++...+
T Consensus 192 l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 227 (236)
T cd03267 192 IRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVI 227 (236)
T ss_pred HHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 85544443344589999999999875 445544333
No 104
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=5.7e-18 Score=186.18 Aligned_cols=143 Identities=14% Similarity=0.162 Sum_probs=104.3
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhc-ceeecCCCCChh---
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GIC-GLMVPAESASIP--- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~-G~~vpa~~~~i~--- 792 (1051)
+..++++++| |++++|+||||||||||+++|+|+... .+. ..|+|+....++
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (255)
T PRK11300 17 GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMT 96 (255)
T ss_pred CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCc
Confidence 4679999999 899999999999999999999998621 011 224566542221
Q ss_pred h------------------------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEE
Q 001570 793 Y------------------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVL 835 (1051)
Q Consensus 793 ~------------------------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlL 835 (1051)
. +..++..+++.+........+|+|+++... +.+.+.+|+++|
T Consensus 97 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 176 (255)
T PRK11300 97 VIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILM 176 (255)
T ss_pred HHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1 112234456655566777889999888554 466689999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHc-CCcEEEEeccChhhhh-Ccccccc
Q 001570 836 IDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKN 884 (1051)
Q Consensus 836 LDEp~~GlD~~~~~~l~~~ile~L~~-~g~~vi~~TH~~el~~-l~~~~~~ 884 (1051)
|||||+|||+.....+ ..++..+++ .|.|+|++||+.+++. .+++...
T Consensus 177 lDEPt~~LD~~~~~~l-~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 226 (255)
T PRK11300 177 LDEPAAGLNPKETKEL-DELIAELRNEHNVTVLLIEHDMKLVMGISDRIYV 226 (255)
T ss_pred EcCCccCCCHHHHHHH-HHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 9999999999888888 555555655 4899999999998864 4544333
No 105
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.76 E-value=6e-18 Score=185.49 Aligned_cols=148 Identities=14% Similarity=0.108 Sum_probs=107.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----------------------------hhcceeecCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------------GICGLMVPAES 788 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----------------------------a~~G~~vpa~~ 788 (1051)
+..++++++| |++++|+||||||||||+|+|+|+... .....++|+..
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 94 (250)
T PRK11264 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNF 94 (250)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCc
Confidence 4578999998 899999999999999999999998621 01124666654
Q ss_pred CChh---h----------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCC
Q 001570 789 ASIP---Y----------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRG 842 (1051)
Q Consensus 789 ~~i~---~----------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~G 842 (1051)
..++ . +..++..+++.+......+++|+|++|... +.+.+.+|+++||||||+|
T Consensus 95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~ 174 (250)
T PRK11264 95 NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSA 174 (250)
T ss_pred ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 3221 1 122344556665566677889999988544 4667899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 843 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 843 lD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
||+.....+ ..+++.+.+.|.++|++||+.+.+. ++++...+.++.
T Consensus 175 LD~~~~~~l-~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 221 (250)
T PRK11264 175 LDPELVGEV-LNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGR 221 (250)
T ss_pred CCHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 999887777 5556666666899999999998764 455443333433
No 106
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.76 E-value=3.6e-18 Score=196.80 Aligned_cols=152 Identities=16% Similarity=0.116 Sum_probs=114.9
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------h--------------------hcceeecCC
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------G--------------------ICGLMVPAE 787 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------a--------------------~~G~~vpa~ 787 (1051)
+...+++++|| |++++|+||||||||||+|+|+|+... . +...|+|+.
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~ 114 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence 45678999999 899999999999999999999998621 0 123467776
Q ss_pred CCChhh------------------------HHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCC
Q 001570 788 SASIPY------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRG 842 (1051)
Q Consensus 788 ~~~i~~------------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~G 842 (1051)
...++. +.+++..+|+.+........+|+||+|...+ .+.+.+|+++||||||+|
T Consensus 115 ~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~ 194 (382)
T TIGR03415 115 FALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSA 194 (382)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 554431 1234556677776777788999999985554 667999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCcccccccccceeE
Q 001570 843 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 891 (1051)
Q Consensus 843 lD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~~ 891 (1051)
||+..+..+...+.+...+.+.|+||+||+++++ +++++...+.++.+.
T Consensus 195 LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv 244 (382)
T TIGR03415 195 LDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRII 244 (382)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999986666554444589999999999986 556655555555543
No 107
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.76 E-value=5.5e-18 Score=182.63 Aligned_cols=149 Identities=18% Similarity=0.214 Sum_probs=108.6
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh----------------hcceeecCCCCChh---h----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------ICGLMVPAESASIP---Y---- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la----------------~~G~~vpa~~~~i~---~---- 793 (1051)
++.++++++| |++++|+||||||||||+++|+|+.... +...++|+....++ .
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~ 91 (223)
T TIGR03740 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENL 91 (223)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHH
Confidence 4578999998 8999999999999999999999986211 11235666543221 1
Q ss_pred -------------HHHHHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 001570 794 -------------FDAIMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 859 (1051)
Q Consensus 794 -------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L 859 (1051)
+..++..+++.+........+|+|+++.. .+.+.+.+|+++||||||+|+|+.....+ ..++..+
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l-~~~L~~~ 170 (223)
T TIGR03740 92 KVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQEL-RELIRSF 170 (223)
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHH-HHHHHHH
Confidence 12344556776666667788999888854 45667899999999999999999888888 5555556
Q ss_pred HcCCcEEEEeccChhhh-hCccccccccccee
Q 001570 860 DNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 860 ~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~ 890 (1051)
.+.|.++|++||+.+++ +.+++...+.++.+
T Consensus 171 ~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i 202 (223)
T TIGR03740 171 PEQGITVILSSHILSEVQQLADHIGIISEGVL 202 (223)
T ss_pred HHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEE
Confidence 66689999999999876 45555444444443
No 108
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.76 E-value=4e-18 Score=176.70 Aligned_cols=136 Identities=18% Similarity=0.151 Sum_probs=98.4
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhh---HHhhhcceeecCC----CCChhhHHHHHHhcCCCC-Ccc
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAA---SLLGICGLMVPAE----SASIPYFDAIMLHMKSYD-SPA 808 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl---~~la~~G~~vpa~----~~~i~~~d~i~~~~~~~d-~~~ 808 (1051)
...+++++|| |++++|+||||||||||||++.+- +.+. | ..+.. ...++. .+.+..+++.. ...
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~--~-~~~~~~~~~~~~~~q-~~~l~~~~L~~~~~~ 82 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLI--S-FLPKFSRNKLIFIDQ-LQFLIDVGLGYLTLG 82 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEEC--C-cccccccccEEEEhH-HHHHHHcCCCccccC
Confidence 3578899998 899999999999999999998521 1100 0 01100 001111 34677788765 367
Q ss_pred CCccchhHHHHHHHHH-HHHcCC--CcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCccc
Q 001570 809 DGKSSFQVEMSEIRSI-VTATTS--RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 881 (1051)
Q Consensus 809 ~~~stfs~e~~~~~~i-l~~a~~--~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~ 881 (1051)
.....+|+++++...+ .+.+.+ |+++|||||++|+|+.....+.. ++..+.+.|.++|++||+.++...+++
T Consensus 83 ~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~-~l~~~~~~g~tvIivSH~~~~~~~~d~ 157 (176)
T cd03238 83 QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGLIDLGNTVILIEHNLDVLSSADW 157 (176)
T ss_pred CCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhCCE
Confidence 7788999999885554 556888 99999999999999988888855 444555579999999999988765443
No 109
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.76 E-value=7.6e-18 Score=182.00 Aligned_cols=148 Identities=15% Similarity=0.146 Sum_probs=105.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhH-----Hhh----------------------hcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-----LLG----------------------ICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~-----~la----------------------~~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+|+|+|+. ... +...|+|+...
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 91 (227)
T cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91 (227)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch
Confidence 4578999998 8999999999999999999999986 211 11235666532
Q ss_pred Ch--hh----------------------HHHHHHhcCCCCCccCC--ccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCC
Q 001570 790 SI--PY----------------------FDAIMLHMKSYDSPADG--KSSFQVEMSEIRSI-VTATTSRSLVLIDEICRG 842 (1051)
Q Consensus 790 ~i--~~----------------------~d~i~~~~~~~d~~~~~--~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~G 842 (1051)
.+ .. +..++..+++.+..... ...+|+|++|...+ .+.+.+|+++||||||+|
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 171 (227)
T cd03260 92 PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171 (227)
T ss_pred hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 21 11 12244555665544444 38899999985554 566899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 843 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 843 lD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
||+.....+ ..++..+.+. .++|++||+.+.+. .+++...+.++.+
T Consensus 172 LD~~~~~~l-~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i 218 (227)
T cd03260 172 LDPISTAKI-EELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRL 218 (227)
T ss_pred CCHHHHHHH-HHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEE
Confidence 999888888 4555555555 89999999998754 4554444444443
No 110
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=4.7e-18 Score=180.74 Aligned_cols=139 Identities=14% Similarity=0.110 Sum_probs=103.7
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh-------------------hcceeecCCCCChh-----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGLMVPAESASIP----- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la-------------------~~G~~vpa~~~~i~----- 792 (1051)
+..++++++| |++++|+||||||||||+++|+|+.... +.-.++|+....++
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 92 (204)
T PRK13538 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTAL 92 (204)
T ss_pred CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHH
Confidence 4578999998 8999999999999999999999986211 11224444322111
Q ss_pred ----------------hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHH
Q 001570 793 ----------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSI 855 (1051)
Q Consensus 793 ----------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~i 855 (1051)
.++.++..+++.+......+.+|+|+++... +.+.+.+|+++||||||+|+|+.....+ ..+
T Consensus 93 e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~ 171 (204)
T PRK13538 93 ENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARL-EAL 171 (204)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHH
Confidence 1234556667766566777899999988554 4667999999999999999999888888 555
Q ss_pred HHHHHcCCcEEEEeccChhhhhCcc
Q 001570 856 IETLDNIGCLGIVSTHLHGIFSLPL 880 (1051)
Q Consensus 856 le~L~~~g~~vi~~TH~~el~~l~~ 880 (1051)
++.+.+.|.|+|++||+.++...+.
T Consensus 172 l~~~~~~~~tiii~sh~~~~i~~~~ 196 (204)
T PRK13538 172 LAQHAEQGGMVILTTHQDLPVASDK 196 (204)
T ss_pred HHHHHHCCCEEEEEecChhhhccCC
Confidence 5556666899999999998876543
No 111
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.75 E-value=3.6e-18 Score=186.82 Aligned_cols=127 Identities=12% Similarity=0.034 Sum_probs=95.1
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhh--------hcceeecCCCCCh---hh-----------------HHHHHHhcC
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLG--------ICGLMVPAESASI---PY-----------------FDAIMLHMK 802 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la--------~~G~~vpa~~~~i---~~-----------------~d~i~~~~~ 802 (1051)
|++++|+||||||||||+|+|+|+.... +...++|+..... .. ...++..++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 7999999999999999999999986321 1123666653211 11 123455566
Q ss_pred CCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh
Q 001570 803 SYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 803 ~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
+.+...+..+.+|+|++|.. .+.+.+.+|+++||||||++||+.....+...+.+...+.+.++|++||+.+++.
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~ 180 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMID 180 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 66666677789999988854 4567799999999999999999998888855555544456899999999998766
No 112
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=4.6e-18 Score=197.28 Aligned_cols=150 Identities=13% Similarity=0.053 Sum_probs=110.9
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------------hhcceeecCCCCCh
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASI 791 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------------a~~G~~vpa~~~~i 791 (1051)
+...+++++|| |++++|+||||||||||+|+|+|+... .+...|+|+....+
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 34568999998 899999999999999999999998611 01234777765433
Q ss_pred hh------------------------HHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHH
Q 001570 792 PY------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETA 846 (1051)
Q Consensus 792 ~~------------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~ 846 (1051)
+. +++++..+++.+...+..+.+|+|++|...+ .+.+.+|+++||||||+|||+.
T Consensus 119 ~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~ 198 (400)
T PRK10070 119 PHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198 (400)
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 21 1234566777777777888999999985554 6679999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 847 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 847 ~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
....+...+.+...+.|+|+|++||+.+++. ++++...+.++.
T Consensus 199 ~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~ 242 (400)
T PRK10070 199 IRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGE 242 (400)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCE
Confidence 8888854444433446899999999998764 455444444443
No 113
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=4.8e-18 Score=188.60 Aligned_cols=148 Identities=16% Similarity=0.115 Sum_probs=106.4
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----------------------hhcceeecCCCCC--h-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESAS--I- 791 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----------------------a~~G~~vpa~~~~--i- 791 (1051)
++.+++++|| |++++|+||||||||||+|+|+|+... .+...|+|++... .
T Consensus 13 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (271)
T PRK13638 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFY 92 (271)
T ss_pred CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccc
Confidence 4568999998 899999999999999999999998621 0113466765320 0
Q ss_pred -hh---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 792 -PY---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 792 -~~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
.. ++.++..+++.+......+.+|+|++|... +.+.+.+|+++||||||+|||+...
T Consensus 93 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~ 172 (271)
T PRK13638 93 TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172 (271)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 01 112344456555556667889999988554 4667999999999999999999888
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
..+ ..++..+.+.|.++|++||+.+.+. .+++...+.++.
T Consensus 173 ~~l-~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~ 213 (271)
T PRK13638 173 TQM-IAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQ 213 (271)
T ss_pred HHH-HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 888 4555556656899999999998764 455443443443
No 114
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=8.1e-18 Score=183.65 Aligned_cols=146 Identities=14% Similarity=0.107 Sum_probs=104.9
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCChh---h-
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP---Y- 793 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i~---~- 793 (1051)
..++++++| |++++|+||||||||||+|+|+|+... .....|+|+....++ .
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVE 93 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHH
Confidence 568999998 899999999999999999999998621 011236666543221 1
Q ss_pred --------------------HHHHHHhcCCCC--CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHH
Q 001570 794 --------------------FDAIMLHMKSYD--SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTC 850 (1051)
Q Consensus 794 --------------------~d~i~~~~~~~d--~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~ 850 (1051)
+.+++..+++.. ........+|+|++|... +.+.+.+|+++||||||+|+|+.....
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 173 (242)
T cd03295 94 ENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQ 173 (242)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 123455566664 456667889999988544 566799999999999999999988777
Q ss_pred HHHHHHHHHHc-CCcEEEEeccChhhh-hCcccccccccc
Q 001570 851 IAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYK 888 (1051)
Q Consensus 851 l~~~ile~L~~-~g~~vi~~TH~~el~-~l~~~~~~i~~~ 888 (1051)
+ ..++..+.+ .|.++|++||+.+.+ ..+++...+.++
T Consensus 174 l-~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G 212 (242)
T cd03295 174 L-QEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNG 212 (242)
T ss_pred H-HHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 7 455555544 589999999999864 445544333333
No 115
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=7e-18 Score=183.97 Aligned_cols=147 Identities=17% Similarity=0.137 Sum_probs=106.0
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCCChh---
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIP--- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~~i~--- 792 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 15 ~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 94 (241)
T PRK10895 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLS 94 (241)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCc
Confidence 4679999999 899999999999999999999998621 111236666542211
Q ss_pred h----------------------HHHHHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 793 Y----------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 793 ~----------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
. ++.++..++..+........+|+|+++.. .+.+.+.+|+++||||||+|+|+....
T Consensus 95 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 174 (241)
T PRK10895 95 VYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVI 174 (241)
T ss_pred HHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 1 22334445555545566678999998854 456678999999999999999998887
Q ss_pred HHHHHHHHHHHcCCcEEEEeccChhhh-hCcccccccccc
Q 001570 850 CIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 888 (1051)
Q Consensus 850 ~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~ 888 (1051)
.+ ..+++.+.+.|.++|++||+.+.+ ..+++...+..+
T Consensus 175 ~l-~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G 213 (241)
T PRK10895 175 DI-KRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQG 213 (241)
T ss_pred HH-HHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCC
Confidence 77 556666776789999999998654 455543333333
No 116
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=7.1e-18 Score=188.05 Aligned_cols=147 Identities=14% Similarity=0.044 Sum_probs=108.6
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCC-Ch---hh
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA-SI---PY 793 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~-~i---~~ 793 (1051)
..+++|++| |++++|+||||||||||+|+|+|+... .+...++|+... .+ ..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATV 99 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccH
Confidence 469999999 899999999999999999999998621 112346776531 11 11
Q ss_pred ---------------------HHHHHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHH
Q 001570 794 ---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCI 851 (1051)
Q Consensus 794 ---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l 851 (1051)
++.++..+++.+.......++|+|++|.. .+.+.+.+|+++||||||+|||+.....+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 179 (279)
T PRK13650 100 EDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL 179 (279)
T ss_pred HHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 23345566777667777889999988754 45667999999999999999999888877
Q ss_pred HHHHHHHHHc-CCcEEEEeccChhhhhCcccccccccce
Q 001570 852 AGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKA 889 (1051)
Q Consensus 852 ~~~ile~L~~-~g~~vi~~TH~~el~~l~~~~~~i~~~~ 889 (1051)
..++..+++ .|.|+|++||+++.+..+++...+..+.
T Consensus 180 -~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~ 217 (279)
T PRK13650 180 -IKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQ 217 (279)
T ss_pred -HHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 555555654 5999999999998876555443333443
No 117
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=7.1e-18 Score=188.00 Aligned_cols=148 Identities=13% Similarity=0.058 Sum_probs=109.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCC-Ch---h
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA-SI---P 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~-~i---~ 792 (1051)
.+.++++++| |++++|+||||||||||+++|+|+... .+...|+|+... .+ .
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~t 98 (279)
T PRK13635 19 ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT 98 (279)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccccc
Confidence 3569999999 899999999999999999999998621 112236666531 11 1
Q ss_pred h---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHH
Q 001570 793 Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTC 850 (1051)
Q Consensus 793 ~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~ 850 (1051)
. ++.++..+++.+........+|+|+++... +.+.+.+|+|+||||||+|||+.....
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 178 (279)
T PRK13635 99 VQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRRE 178 (279)
T ss_pred HHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1 233455667777777788899999998555 466699999999999999999988888
Q ss_pred HHHHHHHHHHc-CCcEEEEeccChhhhhCcccccccccce
Q 001570 851 IAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKA 889 (1051)
Q Consensus 851 l~~~ile~L~~-~g~~vi~~TH~~el~~l~~~~~~i~~~~ 889 (1051)
+ ..++..+.+ .|.|+|++||+++++..+++...+..+.
T Consensus 179 l-~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~ 217 (279)
T PRK13635 179 V-LETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGE 217 (279)
T ss_pred H-HHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCE
Confidence 8 555555655 4899999999999876544433333333
No 118
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=6.3e-18 Score=180.56 Aligned_cols=139 Identities=19% Similarity=0.255 Sum_probs=102.5
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------------------hhcceeecCCCCChh---h-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP---Y- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------------------a~~G~~vpa~~~~i~---~- 793 (1051)
+..++++++| | +++|+||||||||||+|+|+|+... .+...++|++...++ .
T Consensus 12 ~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (211)
T cd03264 12 KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVR 90 (211)
T ss_pred CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHH
Confidence 3578999998 7 9999999999999999999998621 112246776643221 1
Q ss_pred --------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHH
Q 001570 794 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIA 852 (1051)
Q Consensus 794 --------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~ 852 (1051)
++.++..+++.+........+|+|+++... +.+.+.+|+++||||||+|+|+.....+
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l- 169 (211)
T cd03264 91 EFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF- 169 (211)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-
Confidence 122344556655556667889999988544 5677999999999999999999888877
Q ss_pred HHHHHHHHcCCcEEEEeccChhhhh-Ccccc
Q 001570 853 GSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 882 (1051)
Q Consensus 853 ~~ile~L~~~g~~vi~~TH~~el~~-l~~~~ 882 (1051)
..+++.+++ +.|+|++||+.+++. ++++.
T Consensus 170 ~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i 199 (211)
T cd03264 170 RNLLSELGE-DRIVILSTHIVEDVESLCNQV 199 (211)
T ss_pred HHHHHHHhC-CCEEEEEcCCHHHHHHhCCEE
Confidence 566666665 589999999998764 45443
No 119
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=5.3e-18 Score=188.84 Aligned_cols=150 Identities=15% Similarity=0.121 Sum_probs=109.4
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCC--Ch--
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA--SI-- 791 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~--~i-- 791 (1051)
++..++++++| |++++|+||||||||||+|+|+|+... .+...++|++.. .+
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 34569999999 899999999999999999999998611 011236666531 11
Q ss_pred hh---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 792 PY---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 792 ~~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
.. ++.++..+++.+........+|+|+++... +.+.+.+|+++||||||+|||+....
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~ 174 (277)
T PRK13652 95 TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVK 174 (277)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 11 233455567766667778899999988554 46679999999999999999998888
Q ss_pred HHHHHHHHHHHc-CCcEEEEeccChhhh-hCccccccccccee
Q 001570 850 CIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 850 ~l~~~ile~L~~-~g~~vi~~TH~~el~-~l~~~~~~i~~~~~ 890 (1051)
.+ ..++..+.+ .|.|+|++||+++++ +.+++...+..+.+
T Consensus 175 ~l-~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i 216 (277)
T PRK13652 175 EL-IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRI 216 (277)
T ss_pred HH-HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeE
Confidence 87 455555554 489999999999876 46665544444444
No 120
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=5.2e-18 Score=189.26 Aligned_cols=140 Identities=15% Similarity=0.144 Sum_probs=106.4
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCC--Chh--
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESA--SIP-- 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~--~i~-- 792 (1051)
+.++++++| |++++|+||||||||||+++|+|+... .+...++|++.. .++
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 102 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATI 102 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcccc
Confidence 579999999 899999999999999999999998621 112346676531 110
Q ss_pred ---------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHH
Q 001570 793 ---------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTC 850 (1051)
Q Consensus 793 ---------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~ 850 (1051)
.++.++..+++.+.......++|+|++|... +.+.+.+|+++||||||+|||+.....
T Consensus 103 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 182 (280)
T PRK13633 103 VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRRE 182 (280)
T ss_pred HHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 0223455667776677788899999998555 466699999999999999999999888
Q ss_pred HHHHHHHHHHc-CCcEEEEeccChhhhhCcccc
Q 001570 851 IAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKI 882 (1051)
Q Consensus 851 l~~~ile~L~~-~g~~vi~~TH~~el~~l~~~~ 882 (1051)
+ ..++..+.+ .|.|+|++||+++.+..+++.
T Consensus 183 l-~~~l~~l~~~~g~tillvtH~~~~~~~~d~v 214 (280)
T PRK13633 183 V-VNTIKELNKKYGITIILITHYMEEAVEADRI 214 (280)
T ss_pred H-HHHHHHHHHhcCCEEEEEecChHHHhcCCEE
Confidence 8 455556654 589999999999987654433
No 121
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.75 E-value=4.5e-18 Score=179.21 Aligned_cols=150 Identities=15% Similarity=0.114 Sum_probs=111.4
Q ss_pred eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCCC-h-hh--
Q 001570 743 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESAS-I-PY-- 793 (1051)
Q Consensus 743 ~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~~-i-~~-- 793 (1051)
.++|+||| |++++|+|++|||||||.|+++|+.-. .+...+|+|++.. + |.
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 58999999 899999999999999999999999721 1223366665421 1 10
Q ss_pred --------------------HHHHHHhcCCCCC-ccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCHHHHHHH
Q 001570 794 --------------------FDAIMLHMKSYDS-PADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCI 851 (1051)
Q Consensus 794 --------------------~d~i~~~~~~~d~-~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l 851 (1051)
..+++..+|+..+ +.+....||+|++| ++.+.+.+.+|+++|+|||||+||+..++.+
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I 180 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence 2456677777654 35667789998887 5555777999999999999999999999999
Q ss_pred HHHHHHHH-HcCCcEEEEeccChhhhh-CcccccccccceeEEE
Q 001570 852 AGSIIETL-DNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTE 893 (1051)
Q Consensus 852 ~~~ile~L-~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~~~~ 893 (1051)
+.++..+ ++.+.|.||+|||..+++ +++++.-+.++.+...
T Consensus 181 -lnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 181 -LNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred -HHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe
Confidence 4555555 457899999999999876 4555444445554433
No 122
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.75 E-value=9.5e-18 Score=186.08 Aligned_cols=140 Identities=17% Similarity=0.190 Sum_probs=102.8
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------hhcceeecCCCCChh-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------a~~G~~vpa~~~~i~- 792 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++
T Consensus 19 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 98 (269)
T PRK11831 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTD 98 (269)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCC
Confidence 4679999999 899999999999999999999998621 111236666543221
Q ss_pred --hHH----------------------HHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHH
Q 001570 793 --YFD----------------------AIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 793 --~~d----------------------~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
..+ .++..+++.+......+.+|+|++|...+ .+.+.+|+++||||||+|||+..
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 178 (269)
T PRK11831 99 MNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178 (269)
T ss_pred CCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 111 23445566655666778999999985554 56689999999999999999988
Q ss_pred HHHHHHHHHHHHH-cCCcEEEEeccChhhhh-Cccc
Q 001570 848 GTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 848 ~~~l~~~ile~L~-~~g~~vi~~TH~~el~~-l~~~ 881 (1051)
...+...+ ..+. +.|.++|++||+.+.+. .+++
T Consensus 179 ~~~l~~~l-~~~~~~~g~tiiivsH~~~~~~~~~d~ 213 (269)
T PRK11831 179 MGVLVKLI-SELNSALGVTCVVVSHDVPEVLSIADH 213 (269)
T ss_pred HHHHHHHH-HHHHHhcCcEEEEEecCHHHHHHhhCE
Confidence 88875444 4554 44899999999987654 3443
No 123
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=6.4e-18 Score=188.79 Aligned_cols=153 Identities=13% Similarity=0.130 Sum_probs=111.2
Q ss_pred ccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----------------------hhcceeecCCCC-
Q 001570 737 DAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESA- 789 (1051)
Q Consensus 737 ~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----------------------a~~G~~vpa~~~- 789 (1051)
.+.+++.+++++|| |++++|+||||||||||+|+|+|+... .....|+|++..
T Consensus 14 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~ 93 (283)
T PRK13636 14 NYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDN 93 (283)
T ss_pred EeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcch
Confidence 33335679999999 899999999999999999999998611 112347777641
Q ss_pred -Ch--hh---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCC
Q 001570 790 -SI--PY---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTE 844 (1051)
Q Consensus 790 -~i--~~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD 844 (1051)
.+ .. ++.++..+++.+........+|+|++|... +.+.+.+|+++||||||+|||
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD 173 (283)
T PRK13636 94 QLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD 173 (283)
T ss_pred hhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 11 01 233455667766667778899999998555 466689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCcEEEEeccChhhhh-Cccccccccccee
Q 001570 845 TAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 845 ~~~~~~l~~~ile~L~~-~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
+.....+. .+++.+.+ .|.|+|++||+++.+. .+++.-.+.++.+
T Consensus 174 ~~~~~~l~-~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i 220 (283)
T PRK13636 174 PMGVSEIM-KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRV 220 (283)
T ss_pred HHHHHHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 98888884 44455554 4899999999999865 5555444444443
No 124
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.75 E-value=5.3e-18 Score=173.88 Aligned_cols=124 Identities=36% Similarity=0.477 Sum_probs=99.5
Q ss_pred eeeeeEeec--eEEEEEcCCCCCcchHHHHHHhhHHhhh----------cceeecCCCCChhhHHHHHHhcCCCCCccCC
Q 001570 743 AVHNTVDMQ--SLFLLTGPNGGGKSSLLRSICAASLLGI----------CGLMVPAESASIPYFDAIMLHMKSYDSPADG 810 (1051)
Q Consensus 743 ~vl~~islg--~i~~ItGpNGsGKSTLLk~I~gl~~la~----------~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~ 810 (1051)
.+++++.++ .+++|||||||||||++|+|+.+..+++ .|.++|+....+ ++..++
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----i~~~~~-------- 77 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL-----IFTRLQ-------- 77 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE-----ehheee--------
Confidence 578889984 4999999999999999999999999998 888888877554 333332
Q ss_pred ccchhHHHHHHHHHHHHcC--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcc
Q 001570 811 KSSFQVEMSEIRSIVTATT--SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 880 (1051)
Q Consensus 811 ~stfs~e~~~~~~il~~a~--~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~ 880 (1051)
.|..+.++..++.++.... +|+++|+|||++|||+.++..+...+.+++.+ ++++|++||++++....+
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~~~d 148 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAELAD 148 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHhhh
Confidence 3333444444555555544 89999999999999999999999999888877 899999999999987653
No 125
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.75 E-value=7.9e-18 Score=186.98 Aligned_cols=141 Identities=20% Similarity=0.220 Sum_probs=104.8
Q ss_pred CCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------hhcceeecCCCCC---hh--
Q 001570 739 AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------GICGLMVPAESAS---IP-- 792 (1051)
Q Consensus 739 ~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------a~~G~~vpa~~~~---i~-- 792 (1051)
.+++.++++++| |++++|+||||||||||+|+|+|+... .....|+|++... .+
T Consensus 17 ~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~ 96 (272)
T PRK15056 17 RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVL 96 (272)
T ss_pred cCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcc
Confidence 345679999998 899999999999999999999998621 0113366655211 00
Q ss_pred -------------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHH
Q 001570 793 -------------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETA 846 (1051)
Q Consensus 793 -------------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~ 846 (1051)
.++.++..+++.+........+|+|+++... +.+.+.+|+++||||||+|||+.
T Consensus 97 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~ 176 (272)
T PRK15056 97 VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVK 176 (272)
T ss_pred hhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 1223455667766666777899999988554 46678999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCcc
Q 001570 847 KGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPL 880 (1051)
Q Consensus 847 ~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~ 880 (1051)
....+ ..++..+++.|.++|++||+.+.+ ..++
T Consensus 177 ~~~~l-~~~L~~~~~~g~tviivsH~~~~~~~~~d 210 (272)
T PRK15056 177 TEARI-ISLLRELRDEGKTMLVSTHNLGSVTEFCD 210 (272)
T ss_pred HHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 88888 555555666689999999999765 3443
No 126
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.75 E-value=6.2e-18 Score=186.42 Aligned_cols=142 Identities=17% Similarity=0.194 Sum_probs=103.0
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCCh---hh
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASI---PY 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i---~~ 793 (1051)
++.++++++| |++++|+||||||||||+++|+|+... .+...++|+..... ..
T Consensus 14 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (258)
T PRK13548 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTV 93 (258)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCH
Confidence 4679999998 899999999999999999999998621 01123666653221 11
Q ss_pred ---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHHHH-HHc------CCCcEEEEcCCCCCCCH
Q 001570 794 ---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV-TAT------TSRSLVLIDEICRGTET 845 (1051)
Q Consensus 794 ---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il-~~a------~~~sLlLLDEp~~GlD~ 845 (1051)
+..++..+++.+........+|+|++|...+. +.+ .+|+++||||||+|||+
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~ 173 (258)
T PRK13548 94 EEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173 (258)
T ss_pred HHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCH
Confidence 12344555666556667788999999866654 445 48999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccc
Q 001570 846 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 882 (1051)
Q Consensus 846 ~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~ 882 (1051)
.....+...+.+..++.|.++|++||+++++. ++++.
T Consensus 174 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 211 (258)
T PRK13548 174 AHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRI 211 (258)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEE
Confidence 88888855554433266899999999998764 45443
No 127
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.75 E-value=8.8e-18 Score=178.12 Aligned_cols=140 Identities=15% Similarity=0.085 Sum_probs=103.3
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------------------hhcceeecCCCCChh---h-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP---Y- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------------------a~~G~~vpa~~~~i~---~- 793 (1051)
+..++++++| |++++|+||||||||||+++|+|+... .+.-.|+|+.....+ .
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 92 (200)
T PRK13540 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLR 92 (200)
T ss_pred CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHH
Confidence 4579999999 899999999999999999999998621 011235555432211 1
Q ss_pred ---------------HHHHHHhcCCCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Q 001570 794 ---------------FDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 857 (1051)
Q Consensus 794 ---------------~d~i~~~~~~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile 857 (1051)
++.++..++..+........+|+|+++ ++.+.+.+.+|+++||||||+|+|+.....+. .+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~-~~l~ 171 (200)
T PRK13540 93 ENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII-TKIQ 171 (200)
T ss_pred HHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH-HHHH
Confidence 233455556655555666789988887 45556779999999999999999998888884 4445
Q ss_pred HHHcCCcEEEEeccChhhhhCccc
Q 001570 858 TLDNIGCLGIVSTHLHGIFSLPLK 881 (1051)
Q Consensus 858 ~L~~~g~~vi~~TH~~el~~l~~~ 881 (1051)
.+++.|.++|++||+.++...++.
T Consensus 172 ~~~~~~~tiii~sh~~~~~~~~d~ 195 (200)
T PRK13540 172 EHRAKGGAVLLTSHQDLPLNKADY 195 (200)
T ss_pred HHHHcCCEEEEEeCCchhccccch
Confidence 566668999999999988776543
No 128
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.75 E-value=8.6e-18 Score=183.33 Aligned_cols=147 Identities=14% Similarity=0.139 Sum_probs=106.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCCChh---
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIP--- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~~i~--- 792 (1051)
++.++++++| |++++|+||||+|||||+|+|+|+... .+.-.|+|+....++
T Consensus 14 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (242)
T TIGR03411 14 GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLT 93 (242)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCC
Confidence 4578999999 899999999999999999999998611 011225555432211
Q ss_pred -----------------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCC
Q 001570 793 -----------------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRG 842 (1051)
Q Consensus 793 -----------------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~G 842 (1051)
.+..++..+++.+......+++|+|+++... +.+.+.+|+++||||||+|
T Consensus 94 v~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~ 173 (242)
T TIGR03411 94 VFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAG 173 (242)
T ss_pred HHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccC
Confidence 1123445567766666777889999888544 4666899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 843 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 843 lD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
||+.....+ ..+++.+.+ +.++|++||+++++. .+++...+.++.
T Consensus 174 LD~~~~~~l-~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~ 219 (242)
T TIGR03411 174 MTDEETEKT-AELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGS 219 (242)
T ss_pred CCHHHHHHH-HHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 999888887 555555655 689999999998864 455443333333
No 129
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.75 E-value=7.5e-18 Score=178.80 Aligned_cols=135 Identities=17% Similarity=0.161 Sum_probs=100.6
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------------------hhcceeecCCCCChh-----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP----- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------------------a~~G~~vpa~~~~i~----- 792 (1051)
++.++++++| |++++|+||||+|||||+++|+|+... .+...++|++....+
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVL 91 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHH
Confidence 4578999988 899999999999999999999998621 111235555432211
Q ss_pred -------------hHHHHHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 001570 793 -------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 858 (1051)
Q Consensus 793 -------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~ 858 (1051)
.++.++..+++.+........+|+|+++.. .+.+.+.+|+++||||||+|+|+.....+. .++..
T Consensus 92 e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~ 170 (201)
T cd03231 92 ENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFA-EAMAG 170 (201)
T ss_pred HHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 123455666776666667788999988854 456678999999999999999998888884 45555
Q ss_pred HHcCCcEEEEeccChhhh
Q 001570 859 LDNIGCLGIVSTHLHGIF 876 (1051)
Q Consensus 859 L~~~g~~vi~~TH~~el~ 876 (1051)
+.+.|.++|++||+.+..
T Consensus 171 ~~~~g~tiii~sH~~~~~ 188 (201)
T cd03231 171 HCARGGMVVLTTHQDLGL 188 (201)
T ss_pred HHhCCCEEEEEecCchhh
Confidence 666689999999986643
No 130
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=7e-18 Score=174.80 Aligned_cols=126 Identities=17% Similarity=0.214 Sum_probs=90.3
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhh-------------------cceeecCCCCChhhHHHHH
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------------------CGLMVPAESASIPYFDAIM 798 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~-------------------~G~~vpa~~~~i~~~d~i~ 798 (1051)
..++++++| |++++|+||||||||||+|+|+|+..... ...|+|++...++.. .+.
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~-tv~ 91 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENL-TVR 91 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCC-cHH
Confidence 468999998 89999999999999999999999863211 112444443222110 111
Q ss_pred HhcCCCCCccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh
Q 001570 799 LHMKSYDSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 799 ~~~~~~d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
..+ . +|+|+++. ..+.+.+.+|+++||||||+|+|+.....+ ..+++.+.+.|.++|++||+.+++.
T Consensus 92 ~~~------~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 92 ENL------K-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREF-WELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHh------h-----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH-HHHHHHHHHCCCEEEEECCCHHHHH
Confidence 111 1 78888875 445667999999999999999999888888 4555555555899999999998765
Q ss_pred -Ccc
Q 001570 878 -LPL 880 (1051)
Q Consensus 878 -l~~ 880 (1051)
.++
T Consensus 160 ~~~d 163 (173)
T cd03230 160 RLCD 163 (173)
T ss_pred HhCC
Confidence 444
No 131
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=7e-18 Score=187.12 Aligned_cols=139 Identities=11% Similarity=0.044 Sum_probs=103.5
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCC-Chh----
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA-SIP---- 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~-~i~---- 792 (1051)
..++++++| |++++|+||||||||||+|+|+|+... .+...|+|+... .++
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v 101 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIV 101 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccH
Confidence 468999998 899999999999999999999998621 111236666532 110
Q ss_pred --------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHH
Q 001570 793 --------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCI 851 (1051)
Q Consensus 793 --------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l 851 (1051)
.+..++..++..+........+|+|+++... +.+.+.+|+++||||||+|||+.....+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l 181 (269)
T PRK13648 102 KYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL 181 (269)
T ss_pred HHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 1123455667766666777899999988544 5667999999999999999999888888
Q ss_pred HHHHHHHHHc-CCcEEEEeccChhhhhCccc
Q 001570 852 AGSIIETLDN-IGCLGIVSTHLHGIFSLPLK 881 (1051)
Q Consensus 852 ~~~ile~L~~-~g~~vi~~TH~~el~~l~~~ 881 (1051)
...+ ..+.+ .|.|+|++||+.+.+..+++
T Consensus 182 ~~~L-~~~~~~~~~tiiivtH~~~~~~~~d~ 211 (269)
T PRK13648 182 LDLV-RKVKSEHNITIISITHDLSEAMEADH 211 (269)
T ss_pred HHHH-HHHHHhcCCEEEEEecCchHHhcCCE
Confidence 5544 45544 58999999999988764443
No 132
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1e-17 Score=186.31 Aligned_cols=148 Identities=15% Similarity=0.126 Sum_probs=108.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----------------------hhcceeecCCCC--Ch-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESA--SI- 791 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----------------------a~~G~~vpa~~~--~i- 791 (1051)
+..++++++| |++++|+||||||||||+|+|+|+... .+...|+|++.. .+
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (275)
T PRK13639 14 GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFA 93 (275)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcc
Confidence 4568999999 899999999999999999999998621 111236777631 11
Q ss_pred -hh---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 792 -PY---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 792 -~~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
.. +..++..+++.+.......++|+|++|... +.+.+.+|+++||||||+|+|+...
T Consensus 94 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~ 173 (275)
T PRK13639 94 PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173 (275)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 11 123455567766666777899999988554 4667999999999999999999888
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
..+...+ ..+.+.|.|+|++||+.+.+. .+++...+..+.
T Consensus 174 ~~l~~~l-~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~ 214 (275)
T PRK13639 174 SQIMKLL-YDLNKEGITIIISTHDVDLVPVYADKVYVMSDGK 214 (275)
T ss_pred HHHHHHH-HHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 8885444 555556899999999998765 555443333333
No 133
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=9.7e-18 Score=187.69 Aligned_cols=147 Identities=12% Similarity=0.035 Sum_probs=107.7
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------------hhcceeecCCCC--Ch
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESA--SI 791 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------------a~~G~~vpa~~~--~i 791 (1051)
+.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+... .+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 99 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF 99 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence 468999999 899999999999999999999998621 011246676531 11
Q ss_pred --hh---------------------HHHHHHhcCCC-CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHH
Q 001570 792 --PY---------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETA 846 (1051)
Q Consensus 792 --~~---------------------~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~ 846 (1051)
.. +..++..+++. +.......++|+||+|... +.+.+.+|+++||||||+|||+.
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~ 179 (287)
T PRK13641 100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179 (287)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 11 12344556765 4556778899999998555 46668999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 847 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 847 ~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
....+ ..+++.+++.|.|+|++||+++.+. .+++...+..+.
T Consensus 180 ~~~~l-~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~ 222 (287)
T PRK13641 180 GRKEM-MQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGK 222 (287)
T ss_pred HHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 88877 5566667667999999999999764 555443333333
No 134
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.75 E-value=9e-18 Score=179.04 Aligned_cols=137 Identities=18% Similarity=0.148 Sum_probs=101.3
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh-----------------hcceeecCCCCCh---hh---
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------------ICGLMVPAESASI---PY--- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la-----------------~~G~~vpa~~~~i---~~--- 793 (1051)
+..++++++| |++++|+||||||||||+++|+|+.... ....++++....+ ..
T Consensus 14 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~ 93 (207)
T PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAEN 93 (207)
T ss_pred CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHH
Confidence 4578999998 8999999999999999999999986211 1123555432211 11
Q ss_pred --------------HHHHHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 001570 794 --------------FDAIMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 858 (1051)
Q Consensus 794 --------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~ 858 (1051)
+..++..+++.+.......++|+|+++.. .+.+.+.+|+++||||||+|+|+.....+ ..++..
T Consensus 94 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~~ 172 (207)
T PRK13539 94 LEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALF-AELIRA 172 (207)
T ss_pred HHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHH
Confidence 23344555665545566778999988854 45667899999999999999999888888 455555
Q ss_pred HHcCCcEEEEeccChhhhhC
Q 001570 859 LDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 859 L~~~g~~vi~~TH~~el~~l 878 (1051)
+.+.|.++|++||+.+++..
T Consensus 173 ~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 173 HLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred HHHCCCEEEEEeCCchhhcc
Confidence 55669999999999988664
No 135
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.75 E-value=1e-17 Score=171.93 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=91.5
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceee-cCCC-CChhhHHHHHHhcCCCCCccCCccch
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMV-PAES-ASIPYFDAIMLHMKSYDSPADGKSSF 814 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~v-pa~~-~~i~~~d~i~~~~~~~d~~~~~~stf 814 (1051)
+..++++++| |++++|+||||||||||+|+|+|+.... .|... .... ...+..+..-..++. ...+
T Consensus 12 ~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~~~~~~~~~~~~~~~i~~-------~~qL 83 (163)
T cd03216 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGKEVSFASPRDARRAGIAM-------VYQL 83 (163)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEECCcCCHHHHHhcCeEE-------EEec
Confidence 3578999998 8999999999999999999999986432 23221 1111 111111111111111 1228
Q ss_pred hHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCcccc
Q 001570 815 QVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 882 (1051)
Q Consensus 815 s~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~ 882 (1051)
|+++++... +.+.+.+|+++||||||+|||+.....+ ..+++.+.+.|.|+|++||+++.+ +.+++.
T Consensus 84 S~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l-~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~ 152 (163)
T cd03216 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERL-FKVIRRLRAQGVAVIFISHRLDEVFEIADRV 152 (163)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 888887544 4667999999999999999999888888 455555666689999999998864 445443
No 136
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=9.1e-18 Score=179.35 Aligned_cols=139 Identities=14% Similarity=0.113 Sum_probs=98.9
Q ss_pred eEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh------------------hcceeecCCCCChh---h--------
Q 001570 747 TVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIP---Y-------- 793 (1051)
Q Consensus 747 ~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la------------------~~G~~vpa~~~~i~---~-------- 793 (1051)
+++| |++++|+||||||||||+|+|+|+.... +...++|++...++ .
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 6666 8999999999999999999999986210 11236666543221 1
Q ss_pred -------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 001570 794 -------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 859 (1051)
Q Consensus 794 -------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L 859 (1051)
++.++..+++.+........+|+|+++... +.+.+.+|+++||||||+|+|+.....+...+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 175 (211)
T cd03298 96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLH 175 (211)
T ss_pred ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 123444556555555667789999988554 466689999999999999999988888854444433
Q ss_pred HcCCcEEEEeccChhhhh-Cccccccc
Q 001570 860 DNIGCLGIVSTHLHGIFS-LPLKIKNA 885 (1051)
Q Consensus 860 ~~~g~~vi~~TH~~el~~-l~~~~~~i 885 (1051)
.+.|.++|++||+.+++. .+++...+
T Consensus 176 ~~~~~tii~~sH~~~~~~~~~d~i~~l 202 (211)
T cd03298 176 AETKMTVLMVTHQPEDAKRLAQRVVFL 202 (211)
T ss_pred HhcCCEEEEEecCHHHHHhhhCEEEEE
Confidence 345899999999998764 45543333
No 137
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=9.2e-18 Score=186.38 Aligned_cols=140 Identities=14% Similarity=0.063 Sum_probs=103.4
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCC-Ch---h
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA-SI---P 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~-~i---~ 792 (1051)
++.++++++| |++++|+||||||||||+++|+|+... .+...|+|++.. .+ .
T Consensus 21 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 100 (271)
T PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGAT 100 (271)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCccc
Confidence 4679999998 899999999999999999999999621 111246676531 11 1
Q ss_pred h---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHH
Q 001570 793 Y---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTC 850 (1051)
Q Consensus 793 ~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~ 850 (1051)
. +.+++..+++.+........+|+|++|... +.+.+.+|+++||||||+|||+.....
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~ 180 (271)
T PRK13632 101 VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE 180 (271)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1 123345556666666777899999988554 466789999999999999999988777
Q ss_pred HHHHHHHHHHcC-CcEEEEeccChhhhhCccc
Q 001570 851 IAGSIIETLDNI-GCLGIVSTHLHGIFSLPLK 881 (1051)
Q Consensus 851 l~~~ile~L~~~-g~~vi~~TH~~el~~l~~~ 881 (1051)
+. .+++.+.+. +.++|++||+.+.+..+++
T Consensus 181 l~-~~l~~~~~~~~~tiii~sH~~~~~~~~d~ 211 (271)
T PRK13632 181 IK-KIMVDLRKTRKKTLISITHDMDEAILADK 211 (271)
T ss_pred HH-HHHHHHHHhcCcEEEEEEechhHHhhCCE
Confidence 74 555555544 5899999999988765443
No 138
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=7.1e-18 Score=188.84 Aligned_cols=149 Identities=14% Similarity=0.039 Sum_probs=109.2
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------------hhcceeecCCC--CCh
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAES--ASI 791 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------------a~~G~~vpa~~--~~i 791 (1051)
+.++++++| |++++|+||||||||||+|+|+|+... .+...+|++.. ..+
T Consensus 19 ~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 98 (288)
T PRK13643 19 SRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF 98 (288)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcc
Confidence 358999999 899999999999999999999998621 01124677653 111
Q ss_pred --hh---------------------HHHHHHhcCCC-CCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHH
Q 001570 792 --PY---------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETA 846 (1051)
Q Consensus 792 --~~---------------------~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~ 846 (1051)
.. +..++..+++. +........+|+|++|...+ .+.+.+|+++||||||+|||+.
T Consensus 99 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~ 178 (288)
T PRK13643 99 EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178 (288)
T ss_pred cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence 11 22344555664 34566778899999885554 5668999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCcccccccccceeE
Q 001570 847 KGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 891 (1051)
Q Consensus 847 ~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~~ 891 (1051)
....+ ..+++.+++.|.|||++||+++++ .++++...+..+.+.
T Consensus 179 ~~~~l-~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~ 223 (288)
T PRK13643 179 ARIEM-MQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223 (288)
T ss_pred HHHHH-HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 87777 556677766799999999999876 466655555555443
No 139
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.74 E-value=1.1e-17 Score=180.60 Aligned_cols=140 Identities=15% Similarity=0.111 Sum_probs=103.3
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCChh----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP---- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i~---- 792 (1051)
++.++++++| |++++|+||||||||||+++|+|+... .+...|+|+....++
T Consensus 19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~ 98 (225)
T PRK10247 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVY 98 (225)
T ss_pred CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHH
Confidence 4679999999 899999999999999999999998621 112246666532211
Q ss_pred -----------------hHHHHHHhcCCCC-CccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 001570 793 -----------------YFDAIMLHMKSYD-SPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAG 853 (1051)
Q Consensus 793 -----------------~~d~i~~~~~~~d-~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~ 853 (1051)
.+..++..+++.+ .......++|+|+++.. .+.+.+.+|+++||||||+|||+.....+..
T Consensus 99 enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 178 (225)
T PRK10247 99 DNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE 178 (225)
T ss_pred HHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 1224555666643 45667788999988854 4566799999999999999999988777755
Q ss_pred HHHHHHHcCCcEEEEeccChhhhhCcc
Q 001570 854 SIIETLDNIGCLGIVSTHLHGIFSLPL 880 (1051)
Q Consensus 854 ~ile~L~~~g~~vi~~TH~~el~~l~~ 880 (1051)
.+.+..++.|.++|++||+.+++..++
T Consensus 179 ~l~~~~~~~~~tvii~sh~~~~~~~~d 205 (225)
T PRK10247 179 IIHRYVREQNIAVLWVTHDKDEINHAD 205 (225)
T ss_pred HHHHHHHhcCCEEEEEECChHHHHhCC
Confidence 544444446899999999998876443
No 140
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=9.8e-18 Score=182.96 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=106.7
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCChh----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP---- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i~---- 792 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... .+...++|++...++
T Consensus 15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (241)
T PRK14250 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVK 94 (241)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHH
Confidence 4578999999 899999999999999999999998621 112236666643221
Q ss_pred ---------------hHHHHHHhcCCC-CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHH
Q 001570 793 ---------------YFDAIMLHMKSY-DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSI 855 (1051)
Q Consensus 793 ---------------~~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~i 855 (1051)
.+..++..+++. +...+....+|+|++|... +.+.+.+|+++||||||+|+|+.....+ ..+
T Consensus 95 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~ 173 (241)
T PRK14250 95 DNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII-EEL 173 (241)
T ss_pred HHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHH
Confidence 122345556664 3445667789999888554 4667899999999999999999877777 455
Q ss_pred HHHHHc-CCcEEEEeccChhhhh-Cccccccccccee
Q 001570 856 IETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 856 le~L~~-~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
+..+.+ .|.|+|++||+.+.+. .+++...+.++.+
T Consensus 174 l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i 210 (241)
T PRK14250 174 IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL 210 (241)
T ss_pred HHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEE
Confidence 555554 5899999999998754 4554444444433
No 141
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.74 E-value=7e-18 Score=182.83 Aligned_cols=145 Identities=13% Similarity=0.132 Sum_probs=101.5
Q ss_pred eeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------------hcceeecCCCCChh---h----------
Q 001570 746 NTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMVPAESASIP---Y---------- 793 (1051)
Q Consensus 746 ~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------------~~G~~vpa~~~~i~---~---------- 793 (1051)
++++| |++++|+||||||||||+|+|+|+.... ....++|+....++ .
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 34555 8999999999999999999999987211 00135666532211 1
Q ss_pred -------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 001570 794 -------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 859 (1051)
Q Consensus 794 -------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L 859 (1051)
+..++..+++.+......+.+|+|++|... +.+.+.+|+++||||||+|||+.....+...+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 161 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW 161 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 122344556665556677889999988555 466689999999999999999988888855555443
Q ss_pred HcCCcEEEEeccChhhh-hCccccccccccee
Q 001570 860 DNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 860 ~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~ 890 (1051)
++.|.++|++||+++.+ +.+++...+.++.+
T Consensus 162 ~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i 193 (230)
T TIGR01184 162 EEHRVTVLMVTHDVDEALLLSDRVVMLTNGPA 193 (230)
T ss_pred HhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcE
Confidence 44589999999999875 45554444444443
No 142
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.74 E-value=8.4e-18 Score=185.09 Aligned_cols=141 Identities=21% Similarity=0.196 Sum_probs=104.3
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCCh---hh
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASI---PY 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i---~~ 793 (1051)
+..++++++| |++++|+||||||||||+|+|+|+... .+...|+|++...+ ..
T Consensus 13 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (256)
T TIGR03873 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTV 92 (256)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCH
Confidence 4679999999 899999999999999999999998621 11123666653211 11
Q ss_pred -------------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHH
Q 001570 794 -------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 794 -------------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
+..++..+++.+........+|+|+++... +.+.+.+|+++||||||+|+|+..
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 172 (256)
T TIGR03873 93 RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA 172 (256)
T ss_pred HHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 122344456655556677889999988554 466689999999999999999988
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccChhhh-hCcccc
Q 001570 848 GTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 882 (1051)
Q Consensus 848 ~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~ 882 (1051)
...+ ..+++.+++.|.|+|++||+++.+ ..+++.
T Consensus 173 ~~~l-~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i 207 (256)
T TIGR03873 173 QLET-LALVRELAATGVTVVAALHDLNLAASYCDHV 207 (256)
T ss_pred HHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 7777 555566666689999999999887 455543
No 143
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.74 E-value=1.1e-17 Score=183.67 Aligned_cols=140 Identities=16% Similarity=0.168 Sum_probs=104.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------hcceeecCCCCChh---------------
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESASIP--------------- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------~~G~~vpa~~~~i~--------------- 792 (1051)
++.++++++| |++++|+||||||||||+|+|+|+.... ....|+|++....+
T Consensus 16 ~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~ 95 (251)
T PRK09544 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPG 95 (251)
T ss_pred CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhcccc
Confidence 4579999998 8999999999999999999999986321 11236676532211
Q ss_pred ----hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCcEE
Q 001570 793 ----YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLG 866 (1051)
Q Consensus 793 ----~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~-~g~~v 866 (1051)
.+..++..+++.+........+|+|+++... +.+.+.+|+++||||||+|||+.....+...+ ..+.+ .|.|+
T Consensus 96 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L-~~~~~~~g~ti 174 (251)
T PRK09544 96 TKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLI-DQLRRELDCAV 174 (251)
T ss_pred ccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH-HHHHHhcCCEE
Confidence 1123445667766667778899999988554 45668999999999999999998888885444 44544 48999
Q ss_pred EEeccChhhhh-Cccc
Q 001570 867 IVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 867 i~~TH~~el~~-l~~~ 881 (1051)
|++||+.+++. .+++
T Consensus 175 iivsH~~~~i~~~~d~ 190 (251)
T PRK09544 175 LMVSHDLHLVMAKTDE 190 (251)
T ss_pred EEEecCHHHHHHhCCE
Confidence 99999998864 4443
No 144
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=9.1e-18 Score=185.78 Aligned_cols=143 Identities=14% Similarity=0.106 Sum_probs=103.5
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCChh---h
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP---Y 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i~---~ 793 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++ .
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 102 (265)
T PRK10575 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTV 102 (265)
T ss_pred CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccH
Confidence 4679999999 899999999999999999999998621 111236665532211 1
Q ss_pred -------------------------HHHHHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHH
Q 001570 794 -------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 794 -------------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
++.++..+++.+.+......+|+|+++.. .+.+.+.+|+++||||||+|||+..
T Consensus 103 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~ 182 (265)
T PRK10575 103 RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 12344455655555566678999988854 4566799999999999999999988
Q ss_pred HHHHHHHHHHHHHc-CCcEEEEeccChhhh-hCcccccc
Q 001570 848 GTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKN 884 (1051)
Q Consensus 848 ~~~l~~~ile~L~~-~g~~vi~~TH~~el~-~l~~~~~~ 884 (1051)
...+. .++..+.+ .|.++|++||+.+++ ..+++...
T Consensus 183 ~~~~~-~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~ 220 (265)
T PRK10575 183 QVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVA 220 (265)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 88874 44455544 589999999999876 45554333
No 145
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=8e-18 Score=183.05 Aligned_cols=141 Identities=16% Similarity=0.159 Sum_probs=100.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCCChh---
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIP--- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~~i~--- 792 (1051)
+..++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (237)
T PRK11614 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMT 96 (237)
T ss_pred CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCc
Confidence 4679999999 899999999999999999999998621 112336666543222
Q ss_pred hHHH-------------------HHHhc-CCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHH
Q 001570 793 YFDA-------------------IMLHM-KSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCI 851 (1051)
Q Consensus 793 ~~d~-------------------i~~~~-~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l 851 (1051)
..+. ++..+ +..+.......++|+|+++... +.+.+.+|+++||||||+|+|+.....+
T Consensus 97 v~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l 176 (237)
T PRK11614 97 VEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQI 176 (237)
T ss_pred HHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHH
Confidence 1121 22223 2333334556778888887544 4666899999999999999999887777
Q ss_pred HHHHHHHHHcCCcEEEEeccChhhh-hCcccc
Q 001570 852 AGSIIETLDNIGCLGIVSTHLHGIF-SLPLKI 882 (1051)
Q Consensus 852 ~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~ 882 (1051)
..+++.+.+.|.|+|++||+.+.+ +.+++.
T Consensus 177 -~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i 207 (237)
T PRK11614 177 -FDTIEQLREQGMTIFLVEQNANQALKLADRG 207 (237)
T ss_pred -HHHHHHHHHCCCEEEEEeCcHHHHHhhCCEE
Confidence 555556666789999999998754 455443
No 146
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.74 E-value=1.5e-17 Score=181.39 Aligned_cols=149 Identities=17% Similarity=0.204 Sum_probs=103.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhH--Hh--------------------hhc-ceeecCCCCChhh
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--LL--------------------GIC-GLMVPAESASIPY 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~--~l--------------------a~~-G~~vpa~~~~i~~ 793 (1051)
++.++++++| |++++|+||||||||||+|+|+|+. .. .+. ..++|++...++.
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (243)
T TIGR01978 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPG 91 (243)
T ss_pred CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCC
Confidence 4578999998 8999999999999999999999983 00 111 2356665432110
Q ss_pred -------------------------------HHHHHHhcCCCC-CccCCcc-chhHHHHHHH-HHHHHcCCCcEEEEcCC
Q 001570 794 -------------------------------FDAIMLHMKSYD-SPADGKS-SFQVEMSEIR-SIVTATTSRSLVLIDEI 839 (1051)
Q Consensus 794 -------------------------------~d~i~~~~~~~d-~~~~~~s-tfs~e~~~~~-~il~~a~~~sLlLLDEp 839 (1051)
++.++..+++.+ ....... .+|+|++|.. .+.+.+.+|+++|||||
T Consensus 92 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 171 (243)
T TIGR01978 92 VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEI 171 (243)
T ss_pred cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 122334455543 2344454 4999998854 45667999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhC--ccccccccccee
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL--PLKIKNAAYKAM 890 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l--~~~~~~i~~~~~ 890 (1051)
|+|||+.....+ ..++..+.+.|.|+|++||+.+++.. ++....+.++.+
T Consensus 172 t~~LD~~~~~~l-~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i 223 (243)
T TIGR01978 172 DSGLDIDALKIV-AEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRI 223 (243)
T ss_pred cccCCHHHHHHH-HHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEE
Confidence 999999888888 45555566678999999999998764 344333334433
No 147
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.4e-17 Score=181.84 Aligned_cols=149 Identities=17% Similarity=0.149 Sum_probs=107.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------------hhcceeecCCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------------GICGLMVPAESAS 790 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------------a~~G~~vpa~~~~ 790 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... .+.-.|+|+....
T Consensus 14 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (242)
T PRK11124 14 AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNL 93 (242)
T ss_pred CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccc
Confidence 4579999998 899999999999999999999998621 0112366665432
Q ss_pred hh---h----------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCC
Q 001570 791 IP---Y----------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTE 844 (1051)
Q Consensus 791 i~---~----------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD 844 (1051)
++ . +..++..+|+..........+|+|++|... +.+.+.+|+++||||||+|+|
T Consensus 94 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD 173 (242)
T PRK11124 94 WPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173 (242)
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCC
Confidence 21 1 122344556665566677889999988544 466689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 845 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 845 ~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
+.....+ ..+++.+++.|.|+|++||+.++.. .+++...+.++.+
T Consensus 174 ~~~~~~l-~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i 219 (242)
T PRK11124 174 PEITAQI-VSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHI 219 (242)
T ss_pred HHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 9887777 5556666667899999999998764 4554444444443
No 148
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=9.3e-18 Score=189.16 Aligned_cols=147 Identities=12% Similarity=0.041 Sum_probs=109.0
Q ss_pred eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh----------------------------------------
Q 001570 743 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------------------------- 778 (1051)
Q Consensus 743 ~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------------------------------------- 778 (1051)
.++++++| |++++|+||||||||||+|+|+|+....
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 58999999 8999999999999999999999986210
Q ss_pred ----hcceeecCCC--CChh-----------------------hHHHHHHhcCCC-CCccCCccchhHHHHHHHHH-HHH
Q 001570 779 ----ICGLMVPAES--ASIP-----------------------YFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTA 827 (1051)
Q Consensus 779 ----~~G~~vpa~~--~~i~-----------------------~~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~i-l~~ 827 (1051)
+...|||+.. ..+. .+..++..+++. +...+...++|+|++|...+ .+.
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL 180 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGIL 180 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 0124677753 1110 023455666775 55677888999999985554 566
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCccccccccccee
Q 001570 828 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 828 a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~ 890 (1051)
+.+|+++||||||+|||+.....+ ..+++.+++.|.|+|++||+++.+ +.+++...+..+.+
T Consensus 181 ~~~P~lLlLDEPt~~LD~~~~~~l-~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i 243 (305)
T PRK13651 181 AMEPDFLVFDEPTAGLDPQGVKEI-LEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKI 243 (305)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEE
Confidence 899999999999999999877777 566666766799999999999865 55655444444443
No 149
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.74 E-value=3.5e-18 Score=180.21 Aligned_cols=150 Identities=18% Similarity=0.222 Sum_probs=108.8
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhcce-eecCCC---CCh
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGL-MVPAES---ASI 791 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G~-~vpa~~---~~i 791 (1051)
|+-.++||+|| |++++|+|||||||||++++|.|++. .++.|. --+|.. ..+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~l 94 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGL 94 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCC
Confidence 67789999999 89999999999999999999999872 122221 001110 001
Q ss_pred h---------------------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEc
Q 001570 792 P---------------------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLID 837 (1051)
Q Consensus 792 ~---------------------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLD 837 (1051)
. ....++..+|+.+......+.++.+.+++..| .+.+++|+|+|||
T Consensus 95 TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLD 174 (250)
T COG0411 95 TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLD 174 (250)
T ss_pred cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEec
Confidence 1 12245566788777777788888888875554 6679999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCcEEEEeccChhhhh-Cccccccccccee
Q 001570 838 EICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 838 Ep~~GlD~~~~~~l~~~ile~L~~-~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
||.+|+++.+...+ ..++..+.+ .|.|++++.||++++. ++++..-+.++.+
T Consensus 175 EPaAGln~~e~~~l-~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~ 228 (250)
T COG0411 175 EPAAGLNPEETEEL-AELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV 228 (250)
T ss_pred CccCCCCHHHHHHH-HHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcC
Confidence 99999999999999 455555665 6799999999999864 4444333333333
No 150
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.74 E-value=1.2e-17 Score=180.37 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=100.1
Q ss_pred eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------h--------hcceeecCCCC--Ch--
Q 001570 743 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------G--------ICGLMVPAESA--SI-- 791 (1051)
Q Consensus 743 ~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------a--------~~G~~vpa~~~--~i-- 791 (1051)
.++++++| |++++|+||||||||||+++|+|+... . +...|+|++.. ..
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 98 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence 68999998 899999999999999999999998621 0 11235666541 11
Q ss_pred -hhHH-----------------------HHHHhcCCC-CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCH
Q 001570 792 -PYFD-----------------------AIMLHMKSY-DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTET 845 (1051)
Q Consensus 792 -~~~d-----------------------~i~~~~~~~-d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~ 845 (1051)
...+ .++..++.. .........+|+|++|... +.+.+.+|+++||||||+|||+
T Consensus 99 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 178 (228)
T cd03257 99 MTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178 (228)
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCH
Confidence 1111 233445553 3445666789999988554 4567899999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccc
Q 001570 846 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 882 (1051)
Q Consensus 846 ~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~ 882 (1051)
.....+...+.+...+.|.++|++||+.+.+. .+++.
T Consensus 179 ~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i 216 (228)
T cd03257 179 SVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRV 216 (228)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeE
Confidence 88888755454433334899999999998765 45443
No 151
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.1e-17 Score=190.23 Aligned_cols=148 Identities=14% Similarity=0.032 Sum_probs=107.9
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------------h----hcceeecCCCC
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------G----ICGLMVPAESA 789 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------------a----~~G~~vpa~~~ 789 (1051)
..+++|+|| |++++|+||||||||||+++|+|++.. . +...+|||+..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 469999999 899999999999999999999998621 0 12347777642
Q ss_pred --Chh-------------------------hHHHHHHhcCCCC---CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcC
Q 001570 790 --SIP-------------------------YFDAIMLHMKSYD---SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDE 838 (1051)
Q Consensus 790 --~i~-------------------------~~d~i~~~~~~~d---~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDE 838 (1051)
..| .+.+++..+++.+ .+......+|+||+|... +++.+.+|++||+||
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE 179 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE 179 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 111 0123455667653 245677899999998555 466799999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-cCCcEEEEeccChhhh-hCccccccccccee
Q 001570 839 ICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 839 p~~GlD~~~~~~l~~~ile~L~-~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~ 890 (1051)
||+|||+..+..+...+ ..++ +.|.++|++|||++++ +++++...+..+.+
T Consensus 180 Pts~LD~~~~~~il~lL-~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~i 232 (326)
T PRK11022 180 PTTALDVTIQAQIIELL-LELQQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232 (326)
T ss_pred CCCCCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999998888885444 4554 4689999999999987 45555443333433
No 152
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.74 E-value=1e-17 Score=183.98 Aligned_cols=149 Identities=14% Similarity=0.081 Sum_probs=106.5
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------------------hhccee
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------------GICGLM 783 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------------------a~~G~~ 783 (1051)
+..++++++| |++++|+||||||||||+|+|+|+... .+...+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (252)
T TIGR03005 12 ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGM 91 (252)
T ss_pred CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEE
Confidence 4578999999 899999999999999999999998621 112235
Q ss_pred ecCCCCChh---h----------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEc
Q 001570 784 VPAESASIP---Y----------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLID 837 (1051)
Q Consensus 784 vpa~~~~i~---~----------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLD 837 (1051)
+|+....++ . +..++..+++.+........+|+|+++... +.+.+.+|+++|||
T Consensus 92 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 171 (252)
T TIGR03005 92 VFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFD 171 (252)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 665532221 1 123445556665566677889999888544 56668999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCcccccccccce
Q 001570 838 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 889 (1051)
Q Consensus 838 Ep~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~ 889 (1051)
|||+|||+.....+...+.+..++.|.++|++||+++.+ .++++...+.++.
T Consensus 172 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 224 (252)
T TIGR03005 172 EVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGR 224 (252)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 999999998888875444444344589999999999876 4555444444443
No 153
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.74 E-value=1.1e-17 Score=177.08 Aligned_cols=133 Identities=14% Similarity=0.117 Sum_probs=99.3
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------------------hhcceeecCCCCChh---h-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP---Y- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------------------a~~G~~vpa~~~~i~---~- 793 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++ .
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSAL 91 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHH
Confidence 4678999998 899999999999999999999998621 011235665432211 1
Q ss_pred ----------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHH
Q 001570 794 ----------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSII 856 (1051)
Q Consensus 794 ----------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~il 856 (1051)
+..++..+++.+.......++|+|+++... +.+.+.+|+++||||||+|+|+.....+ ..++
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l 170 (198)
T TIGR01189 92 ENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL-AGLL 170 (198)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-HHHH
Confidence 233455566666666777889999888554 4666899999999999999999887777 5555
Q ss_pred HHHHcCCcEEEEeccChh
Q 001570 857 ETLDNIGCLGIVSTHLHG 874 (1051)
Q Consensus 857 e~L~~~g~~vi~~TH~~e 874 (1051)
..+.+.|.|+|++||+..
T Consensus 171 ~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 171 RAHLARGGIVLLTTHQDL 188 (198)
T ss_pred HHHHhCCCEEEEEEcccc
Confidence 555666899999999874
No 154
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.74 E-value=1.2e-17 Score=173.87 Aligned_cols=125 Identities=16% Similarity=0.050 Sum_probs=90.7
Q ss_pred eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhh-------------------cceeecCCCCChhhHHHHHH
Q 001570 743 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------------------CGLMVPAESASIPYFDAIML 799 (1051)
Q Consensus 743 ~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~-------------------~G~~vpa~~~~i~~~d~i~~ 799 (1051)
.++++++| |++++|+||||||||||+|+|+|+..... ...|+|+....++ . .+..
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~-tv~~ 93 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-T-TLRN 93 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-c-cHHH
Confidence 68999998 89999999999999999999999863211 1123444332211 0 1111
Q ss_pred hcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 800 HMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 800 ~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
.+ ...+|+++++.. .+.+.+.+|+++||||||+|+|+.....+ ..+++.+. .+.|+|++||+.++...
T Consensus 94 ~i---------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l-~~~l~~~~-~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 94 NL---------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL-LSLIFEVL-KDKTLIWITHHLTGIEH 162 (178)
T ss_pred hh---------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHH-HHHHHHHc-CCCEEEEEecCHHHHHh
Confidence 11 567888888754 45667999999999999999999887777 45555555 48999999999998765
Q ss_pred cc
Q 001570 879 PL 880 (1051)
Q Consensus 879 ~~ 880 (1051)
++
T Consensus 163 ~d 164 (178)
T cd03247 163 MD 164 (178)
T ss_pred CC
Confidence 43
No 155
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1e-17 Score=185.44 Aligned_cols=141 Identities=13% Similarity=0.097 Sum_probs=103.4
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCChh----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP---- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i~---- 792 (1051)
+..+++++|| |++++|+||||||||||+|+|+|+... .....|+|++...++
T Consensus 19 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 98 (265)
T PRK10253 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITV 98 (265)
T ss_pred CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcH
Confidence 4679999999 899999999999999999999998621 011235666532211
Q ss_pred ------------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHH
Q 001570 793 ------------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 793 ------------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
.++.++..+++.+...+....+|+|++|... +.+.+.+|+++||||||+|||+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~ 178 (265)
T PRK10253 99 QELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH 178 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 1123444556655566777889999988544 466799999999999999999988
Q ss_pred HHHHHHHHHHHHHc-CCcEEEEeccChhhh-hCcccc
Q 001570 848 GTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKI 882 (1051)
Q Consensus 848 ~~~l~~~ile~L~~-~g~~vi~~TH~~el~-~l~~~~ 882 (1051)
...+...+ ..+.+ .|.++|++||+.+++ ..+++.
T Consensus 179 ~~~l~~~L-~~l~~~~~~tiii~tH~~~~~~~~~d~i 214 (265)
T PRK10253 179 QIDLLELL-SELNREKGYTLAAVLHDLNQACRYASHL 214 (265)
T ss_pred HHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 88885444 45554 589999999999865 455543
No 156
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.1e-17 Score=173.05 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=87.2
Q ss_pred eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhcce---------------------eecCCCCChhhHHHH
Q 001570 743 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL---------------------MVPAESASIPYFDAI 797 (1051)
Q Consensus 743 ~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~---------------------~vpa~~~~i~~~d~i 797 (1051)
.++++++| |++++|+||||||||||+|+|+|+.... .|. ++|++...++ ..+
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~--~t~ 92 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS--GTI 92 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc--chH
Confidence 68899888 8999999999999999999999986322 121 2232221111 011
Q ss_pred HHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh
Q 001570 798 MLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 876 (1051)
Q Consensus 798 ~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~ 876 (1051)
.. ++ +|+|+++... +.+.+.+|+++||||||+|+|+.....+ ..++..+.+ +.++|++||+++.+
T Consensus 93 ~e------~l------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l-~~~l~~~~~-~~tii~~sh~~~~~ 158 (171)
T cd03228 93 RE------NI------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALI-LEALRALAK-GKTVIVIAHRLSTI 158 (171)
T ss_pred HH------Hh------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH-HHHHHHhcC-CCEEEEEecCHHHH
Confidence 11 11 8888887554 4566899999999999999999888887 455555554 69999999999887
Q ss_pred hCc
Q 001570 877 SLP 879 (1051)
Q Consensus 877 ~l~ 879 (1051)
..+
T Consensus 159 ~~~ 161 (171)
T cd03228 159 RDA 161 (171)
T ss_pred HhC
Confidence 643
No 157
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.74 E-value=1.2e-17 Score=184.99 Aligned_cols=142 Identities=14% Similarity=0.100 Sum_probs=103.8
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------hhcceeecCCCC--Ch
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESA--SI 791 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------a~~G~~vpa~~~--~i 791 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+... ..
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN 102 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence 4679999999 899999999999999999999998610 112346676531 11
Q ss_pred ---hh----------------------HHHHHHhcCCC-CCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCC
Q 001570 792 ---PY----------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTE 844 (1051)
Q Consensus 792 ---~~----------------------~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD 844 (1051)
.. +..++..+++. .........+|+|++|...+ .+.+.+|+++||||||+|||
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD 182 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD 182 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 00 12345556664 34566778899999885554 56689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccc
Q 001570 845 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 882 (1051)
Q Consensus 845 ~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~ 882 (1051)
+.....+...+.+...+.|.|+|++||+.+.+. ++++.
T Consensus 183 ~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i 221 (265)
T TIGR02769 183 MVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRV 221 (265)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEE
Confidence 988887755554443445899999999998875 45443
No 158
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.3e-17 Score=183.55 Aligned_cols=140 Identities=15% Similarity=0.137 Sum_probs=102.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCCh---hh
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASI---PY 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i---~~ 793 (1051)
++.+++++|| |++++|+||||||||||+|+|+|+... .+...|+|++...+ ..
T Consensus 14 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (255)
T PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITV 93 (255)
T ss_pred CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccH
Confidence 4679999998 899999999999999999999998611 11133666653221 11
Q ss_pred -------------------------HHHHHHhcCCCCCccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCCHHH
Q 001570 794 -------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 794 -------------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
++.++..+++.+........+|+|+++. ..+.+.+.+|+++||||||+|+|+..
T Consensus 94 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (255)
T PRK11231 94 RELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH 173 (255)
T ss_pred HHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 1223344455555566677899998884 44566799999999999999999988
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccc
Q 001570 848 GTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 848 ~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~ 881 (1051)
...+. .++..+.+.|.++|++||+.+.+. .+++
T Consensus 174 ~~~l~-~~l~~l~~~~~tiii~tH~~~~~~~~~d~ 207 (255)
T PRK11231 174 QVELM-RLMRELNTQGKTVVTVLHDLNQASRYCDH 207 (255)
T ss_pred HHHHH-HHHHHHHHCCCEEEEEECCHHHHHHhcCE
Confidence 88875 444556656899999999998754 4443
No 159
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=8.4e-18 Score=181.83 Aligned_cols=139 Identities=14% Similarity=0.149 Sum_probs=96.8
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCChh--hH
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP--YF 794 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i~--~~ 794 (1051)
++.++++++| |++++|+||||||||||||+|+|+... .....|+|+....++ ..
T Consensus 15 ~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (229)
T cd03254 15 KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIM 94 (229)
T ss_pred CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHH
Confidence 3468999998 899999999999999999999998621 111246666543221 11
Q ss_pred HHH---------------HHhcC-----------CCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHH
Q 001570 795 DAI---------------MLHMK-----------SYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 795 d~i---------------~~~~~-----------~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
+.+ +..++ ...........+|+|+++... +.+.+.+|+++||||||+|||+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~ 174 (229)
T cd03254 95 ENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET 174 (229)
T ss_pred HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 111 11111 111222334678989888544 466699999999999999999988
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccChhhhhCccc
Q 001570 848 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 881 (1051)
Q Consensus 848 ~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~ 881 (1051)
...+ ..++..+. .+.++|++||+.++...+++
T Consensus 175 ~~~l-~~~l~~~~-~~~tii~~sh~~~~~~~~d~ 206 (229)
T cd03254 175 EKLI-QEALEKLM-KGRTSIIIAHRLSTIKNADK 206 (229)
T ss_pred HHHH-HHHHHHhc-CCCEEEEEecCHHHHhhCCE
Confidence 8888 44555555 48999999999988765443
No 160
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.1e-17 Score=174.03 Aligned_cols=135 Identities=17% Similarity=0.226 Sum_probs=88.0
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhccee-ecCCC-CChhh-HHHHHHhcC-------C--C
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLM-VPAES-ASIPY-FDAIMLHMK-------S--Y 804 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~-vpa~~-~~i~~-~d~i~~~~~-------~--~ 804 (1051)
++.++++++| |++++|+||||||||||+|+|+|+.... .|.. +.... ...+. .......++ . .
T Consensus 12 ~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD-SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 3568999998 8999999999999999999999986321 2211 11000 00000 000000000 0 0
Q ss_pred CCccCCccc-hhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC-CcEEEEeccChhhhh
Q 001570 805 DSPADGKSS-FQVEMSEI-RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI-GCLGIVSTHLHGIFS 877 (1051)
Q Consensus 805 d~~~~~~st-fs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~-g~~vi~~TH~~el~~ 877 (1051)
......... +|+|++|. ..+.+.+.+|+++|||||++|+|+.....+ ..+++.+++. |.++|++||++++..
T Consensus 91 ~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l-~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 91 LTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV-RALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred CCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 011111111 88888874 445677999999999999999999887777 5555556555 799999999998765
No 161
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.74 E-value=6.5e-18 Score=182.39 Aligned_cols=148 Identities=15% Similarity=0.078 Sum_probs=119.1
Q ss_pred eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH------------------------hhhcceeecCCCCChhhH
Q 001570 743 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL------------------------LGICGLMVPAESASIPYF 794 (1051)
Q Consensus 743 ~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~------------------------la~~G~~vpa~~~~i~~~ 794 (1051)
.-++|+|| |++++|+|-+|||||||+|++++++. ..+.-++|+|.++.+|+.
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 45678888 89999999999999999999999971 123345788888877762
Q ss_pred ------------------------HHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 795 ------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 795 ------------------------d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
...+..+|+.+...+....+|+||+|...+ .+.+++|+++|||||||.|||.-+.
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~ 201 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT 201 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence 245667788888888899999999996665 5669999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 850 CIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 850 ~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
.+-..+++.-++.++||+|+|||++++- +.++...+..+.+
T Consensus 202 ~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~i 243 (386)
T COG4175 202 EMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEI 243 (386)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeE
Confidence 9988888877778999999999999875 3333333334443
No 162
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.74 E-value=1.5e-17 Score=183.28 Aligned_cols=146 Identities=16% Similarity=0.098 Sum_probs=106.3
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------------------------------hccee
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------------------ICGLM 783 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------------------------------~~G~~ 783 (1051)
++.++++++| |++++|+||||||||||+++|+|+.... +.-.|
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 96 (257)
T PRK10619 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTM 96 (257)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEE
Confidence 4679999999 8999999999999999999999986210 11246
Q ss_pred ecCCCCChh---hH----------------------HHHHHhcCCCCCc-cCCccchhHHHHHHHH-HHHHcCCCcEEEE
Q 001570 784 VPAESASIP---YF----------------------DAIMLHMKSYDSP-ADGKSSFQVEMSEIRS-IVTATTSRSLVLI 836 (1051)
Q Consensus 784 vpa~~~~i~---~~----------------------d~i~~~~~~~d~~-~~~~stfs~e~~~~~~-il~~a~~~sLlLL 836 (1051)
+|+....++ .. ..++..+++.+.. ......+|+|+++... +.+.+.+|+++||
T Consensus 97 v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 176 (257)
T PRK10619 97 VFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLF 176 (257)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 666543221 11 2234555665543 5667889999988554 4666899999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccc
Q 001570 837 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAY 887 (1051)
Q Consensus 837 DEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~ 887 (1051)
||||+|||+.....+ ..++..+.+.|+++|++||+.+++. ++++...+..
T Consensus 177 DEPt~~LD~~~~~~l-~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~ 227 (257)
T PRK10619 177 DEPTSALDPELVGEV-LRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQ 227 (257)
T ss_pred eCCcccCCHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 999999999888887 4555566667999999999998765 4554433333
No 163
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.3e-17 Score=186.32 Aligned_cols=141 Identities=16% Similarity=0.105 Sum_probs=105.7
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhh-----------------------cceeecCCCC-Ch--
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----------------------CGLMVPAESA-SI-- 791 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~-----------------------~G~~vpa~~~-~i-- 791 (1051)
..++++++| |++++|+||||||||||+|+|+|+..... ...++|+... .+
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 468999998 89999999999999999999999863321 1236666531 11
Q ss_pred -hh---------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 792 -PY---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 792 -~~---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
.. ++.++..+++.+........+|+|+++... +.+.+.+|+++||||||+|||+...
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~ 179 (282)
T PRK13640 100 ATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK 179 (282)
T ss_pred CCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 01 223455667766667778899999988544 4667999999999999999999888
Q ss_pred HHHHHHHHHHHHc-CCcEEEEeccChhhhhCccccc
Q 001570 849 TCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIK 883 (1051)
Q Consensus 849 ~~l~~~ile~L~~-~g~~vi~~TH~~el~~l~~~~~ 883 (1051)
..+.. ++..+.+ .|.++|++||+++++..+++..
T Consensus 180 ~~l~~-~l~~l~~~~g~tvli~tH~~~~~~~~d~i~ 214 (282)
T PRK13640 180 EQILK-LIRKLKKKNNLTVISITHDIDEANMADQVL 214 (282)
T ss_pred HHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEE
Confidence 88854 4455554 5899999999999876554433
No 164
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.74 E-value=1.7e-17 Score=180.52 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=98.5
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCChh--hH
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP--YF 794 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i~--~~ 794 (1051)
+..++++++| |++++|+||||||||||+|+|+|+... .+...++|+....++ ..
T Consensus 14 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (237)
T cd03252 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR 93 (237)
T ss_pred CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHH
Confidence 3568999998 899999999999999999999998621 112346676643221 11
Q ss_pred HHH---------------HHhc-----------CCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHH
Q 001570 795 DAI---------------MLHM-----------KSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 795 d~i---------------~~~~-----------~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
+.+ .... +..........++|+|++|... +.+.+.+|+++||||||+|||+..
T Consensus 94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (237)
T cd03252 94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173 (237)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 111 1111 1122223455789999988554 466689999999999999999988
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccc
Q 001570 848 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 882 (1051)
Q Consensus 848 ~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~ 882 (1051)
...+... +..+.+ |.++|++||+++++..++..
T Consensus 174 ~~~l~~~-l~~~~~-~~tiii~sH~~~~~~~~d~v 206 (237)
T cd03252 174 EHAIMRN-MHDICA-GRTVIIIAHRLSTVKNADRI 206 (237)
T ss_pred HHHHHHH-HHHhcC-CCEEEEEeCCHHHHHhCCEE
Confidence 8888544 445554 89999999999987654433
No 165
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=1.6e-17 Score=177.98 Aligned_cols=136 Identities=15% Similarity=0.102 Sum_probs=101.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------hhcceeecCCCCChh---hH--
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------GICGLMVPAESASIP---YF-- 794 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------a~~G~~vpa~~~~i~---~~-- 794 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++ ..
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~ 102 (214)
T PRK13543 23 EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLEN 102 (214)
T ss_pred CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHH
Confidence 4579999999 899999999999999999999998621 111236665532211 11
Q ss_pred ----------------HHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Q 001570 795 ----------------DAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 857 (1051)
Q Consensus 795 ----------------d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile 857 (1051)
..++..+++.+........+|+|+++... +.+.+.+|+++||||||+|+|+.....+ ..+++
T Consensus 103 l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~ 181 (214)
T PRK13543 103 LHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLV-NRMIS 181 (214)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHH
Confidence 23445566665566677889999888544 4666899999999999999999877777 55666
Q ss_pred HHHcCCcEEEEeccChhhhh
Q 001570 858 TLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 858 ~L~~~g~~vi~~TH~~el~~ 877 (1051)
.+.+.|.++|++||+++.+.
T Consensus 182 ~~~~~~~tiii~sH~~~~~~ 201 (214)
T PRK13543 182 AHLRGGGAALVTTHGAYAAP 201 (214)
T ss_pred HHHhCCCEEEEEecChhhhh
Confidence 66667899999999998764
No 166
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.74 E-value=1.8e-17 Score=178.26 Aligned_cols=139 Identities=18% Similarity=0.210 Sum_probs=104.2
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------hhcceeecCCCCChh--
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESASIP-- 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------a~~G~~vpa~~~~i~-- 792 (1051)
..+++++|| |++++|+||||||||||+++|+|+... .+...++|+....++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL 97 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence 578999999 899999999999999999999998511 112335665532211
Q ss_pred -----------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 793 -----------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 793 -----------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
.+..++..+++.+........+|+|+++... +.+.+.+|+++|||||++|+|+...
T Consensus 98 t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~ 177 (220)
T TIGR02982 98 TARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSG 177 (220)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 1234555667766667777889999988554 4666899999999999999999888
Q ss_pred HHHHHHHHHHHH-cCCcEEEEeccChhhhhCccc
Q 001570 849 TCIAGSIIETLD-NIGCLGIVSTHLHGIFSLPLK 881 (1051)
Q Consensus 849 ~~l~~~ile~L~-~~g~~vi~~TH~~el~~l~~~ 881 (1051)
..+. .+++.+. +.+.++|++||+++....+++
T Consensus 178 ~~l~-~~l~~~~~~~~~tii~~sh~~~~~~~~d~ 210 (220)
T TIGR02982 178 RDVV-ELMQKLAREQGCTILIVTHDNRILDVADR 210 (220)
T ss_pred HHHH-HHHHHHHHHcCCEEEEEeCCHHHHhhCCE
Confidence 8884 4454454 458999999999987665543
No 167
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.74 E-value=1.1e-17 Score=179.88 Aligned_cols=139 Identities=15% Similarity=0.108 Sum_probs=98.0
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCChh--hHH
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP--YFD 795 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i~--~~d 795 (1051)
..++++++| |++++|+||||||||||+++|+|+... .....++|++...++ ..+
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 96 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRD 96 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHH
Confidence 568999998 899999999999999999999998621 112346776653322 111
Q ss_pred ---------------HHHHhcCCCCCccC-----------CccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 796 ---------------AIMLHMKSYDSPAD-----------GKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 796 ---------------~i~~~~~~~d~~~~-----------~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
.++..+++.+.... ....+|+|+++...+ .+.+.+|+++||||||+|||+...
T Consensus 97 ~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 176 (220)
T cd03245 97 NITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176 (220)
T ss_pred HhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 22233333222221 235899999885554 566899999999999999999888
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccChhhhhCcccc
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 882 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~ 882 (1051)
..+. .+++.+.+ +.++|++||++++.+.+++.
T Consensus 177 ~~l~-~~l~~~~~-~~tii~~sH~~~~~~~~d~v 208 (220)
T cd03245 177 ERLK-ERLRQLLG-DKTLIIITHRPSLLDLVDRI 208 (220)
T ss_pred HHHH-HHHHHhcC-CCEEEEEeCCHHHHHhCCEE
Confidence 8884 44555555 38999999999887655443
No 168
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.1e-17 Score=185.25 Aligned_cols=149 Identities=13% Similarity=0.030 Sum_probs=108.6
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh------------------------hcceeecCCCC--Ch
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------ICGLMVPAESA--SI 791 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la------------------------~~G~~vpa~~~--~i 791 (1051)
..++++++| |++++|+||||||||||+|+|+|+.... +...|+|+... .+
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF 99 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh
Confidence 469999999 8999999999999999999999986210 11246777531 11
Q ss_pred h-----------------------hHHHHHHhcCCC-CCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHH
Q 001570 792 P-----------------------YFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETA 846 (1051)
Q Consensus 792 ~-----------------------~~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~ 846 (1051)
+ .++.++..+++. +........+|+|++|...+ .+.+.+|+++||||||+|||+.
T Consensus 100 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~ 179 (290)
T PRK13634 100 EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 179 (290)
T ss_pred hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 0 123345566775 34567788999999985554 6668999999999999999998
Q ss_pred HHHHHHHHHHHHHHc-CCcEEEEeccChhhh-hCcccccccccceeE
Q 001570 847 KGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 891 (1051)
Q Consensus 847 ~~~~l~~~ile~L~~-~g~~vi~~TH~~el~-~l~~~~~~i~~~~~~ 891 (1051)
....+ ..++..+.+ .|.|||++||+++.+ ..+++...+..+.+.
T Consensus 180 ~~~~l-~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~ 225 (290)
T PRK13634 180 GRKEM-MEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF 225 (290)
T ss_pred HHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 88887 455555654 589999999999876 455554444444443
No 169
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.73 E-value=1.4e-17 Score=183.87 Aligned_cols=148 Identities=15% Similarity=0.129 Sum_probs=106.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh----------------------------hcceeecCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------------ICGLMVPAES 788 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la----------------------------~~G~~vpa~~ 788 (1051)
+..++++++| |++++|+||||||||||+|+|+|+.... +...|+|+..
T Consensus 16 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 4678999999 8999999999999999999999986321 0123566653
Q ss_pred CChh---h-----------------------------HHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEE
Q 001570 789 ASIP---Y-----------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVL 835 (1051)
Q Consensus 789 ~~i~---~-----------------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlL 835 (1051)
..++ . +..++..+++.+........+|+|++|...+ .+.+.+|+++|
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 175 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVIL 175 (262)
T ss_pred ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 3221 1 1223444566555566778899998885554 56789999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHH-cCCcEEEEeccChhhh-hCcccccccccce
Q 001570 836 IDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 889 (1051)
Q Consensus 836 LDEp~~GlD~~~~~~l~~~ile~L~-~~g~~vi~~TH~~el~-~l~~~~~~i~~~~ 889 (1051)
|||||+|||+.....+. .+++.+. +.|.++|++||+.+++ ..+++...+.++.
T Consensus 176 lDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 176 ADEPIASLDPESARIVM-DTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred ecCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999998888884 4455554 4589999999999864 4555443333333
No 170
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.3e-17 Score=184.52 Aligned_cols=147 Identities=13% Similarity=0.099 Sum_probs=107.6
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------------hhcceeecCCC--CCh
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAES--ASI 791 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------------a~~G~~vpa~~--~~i 791 (1051)
..++++++| |++++|+||||||||||+|+|+|+... .+...++|+.. ..+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF 99 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccc
Confidence 469999999 899999999999999999999998621 01124677753 111
Q ss_pred h--h---------------------HHHHHHhcCCC-CCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHH
Q 001570 792 P--Y---------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETA 846 (1051)
Q Consensus 792 ~--~---------------------~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~ 846 (1051)
+ . +..++..+|+. +........+|+|++|...+ .+.+.+|+++||||||+|||+.
T Consensus 100 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~ 179 (286)
T PRK13646 100 EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQ 179 (286)
T ss_pred hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 1 1 12345556775 44566788999999885554 5668999999999999999998
Q ss_pred HHHHHHHHHHHHHHc-CCcEEEEeccChhhh-hCcccccccccce
Q 001570 847 KGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYKA 889 (1051)
Q Consensus 847 ~~~~l~~~ile~L~~-~g~~vi~~TH~~el~-~l~~~~~~i~~~~ 889 (1051)
....+ ..+++.+.+ .|.|+|++||+++++ +.+++...+..+.
T Consensus 180 ~~~~l-~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~ 223 (286)
T PRK13646 180 SKRQV-MRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGS 223 (286)
T ss_pred HHHHH-HHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 88888 555666654 589999999999876 4555444443343
No 171
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.73 E-value=1.8e-17 Score=180.47 Aligned_cols=150 Identities=16% Similarity=0.108 Sum_probs=108.5
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------hhcceeecCCCCChh------
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIP------ 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------a~~G~~vpa~~~~i~------ 792 (1051)
++.++++++| |++++|+||||||||||+++|+|+... .+...|+|+....++
T Consensus 12 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 91 (237)
T TIGR00968 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRD 91 (237)
T ss_pred CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHH
Confidence 4579999998 899999999999999999999998621 112236666532221
Q ss_pred ------------------hHHHHHHhcCCCCCccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 001570 793 ------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTETAKGTCIAG 853 (1051)
Q Consensus 793 ------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~ 853 (1051)
.++.++..+++.+........+|+|+++. ..+.+.+.+|+++|||||++|+|+.....+.
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~- 170 (237)
T TIGR00968 92 NIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELR- 170 (237)
T ss_pred HHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-
Confidence 01334555666555566678899998885 4456678999999999999999998877774
Q ss_pred HHHHHHHcC-CcEEEEeccChhhh-hCcccccccccceeE
Q 001570 854 SIIETLDNI-GCLGIVSTHLHGIF-SLPLKIKNAAYKAMG 891 (1051)
Q Consensus 854 ~ile~L~~~-g~~vi~~TH~~el~-~l~~~~~~i~~~~~~ 891 (1051)
.+++.+.+. ++|+|++||+++++ ..+++...+.++.+.
T Consensus 171 ~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~ 210 (237)
T TIGR00968 171 SWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE 210 (237)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEE
Confidence 455555554 89999999999875 456555444455443
No 172
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.73 E-value=8.7e-18 Score=166.46 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=112.5
Q ss_pred CCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhcceeecCCCCCh---
Q 001570 739 AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAESASI--- 791 (1051)
Q Consensus 739 ~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G~~vpa~~~~i--- 791 (1051)
.++..++|++|| |++++||||+|||||||+|++|.++- ..|-.+|+-|.++.+
T Consensus 13 a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~t 92 (223)
T COG4619 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDT 92 (223)
T ss_pred cCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccc
Confidence 357789999999 89999999999999999999999872 122233444443332
Q ss_pred -------hh-----------HHHHHHhcCCCCCc-cCCccchhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCCHHHHHHH
Q 001570 792 -------PY-----------FDAIMLHMKSYDSP-ADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTETAKGTCI 851 (1051)
Q Consensus 792 -------~~-----------~d~i~~~~~~~d~~-~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD~~~~~~l 851 (1051)
|+ +-.++.+++..+.. .+....+|+|.+|+ +.+.....-|+++||||||+.||+.....+
T Consensus 93 VeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~i 172 (223)
T COG4619 93 VEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172 (223)
T ss_pred hhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHH
Confidence 22 22466777776654 45566788887775 445566789999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEeccChhhh-hCccccccccccee
Q 001570 852 AGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 852 ~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~ 890 (1051)
-..|.++.+++...++++|||.+.+ ..++....+.-++.
T Consensus 173 e~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 173 EEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred HHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 7777777778899999999998884 44544444444443
No 173
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.73 E-value=1.5e-17 Score=167.02 Aligned_cols=141 Identities=13% Similarity=0.085 Sum_probs=107.6
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhhhcc------------------eeecCCCCChhh-------------------
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLGICG------------------LMVPAESASIPY------------------- 793 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G------------------~~vpa~~~~i~~------------------- 793 (1051)
|++++|+||+||||||||+.|+|+...++.. ++++|+...+.+
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a 104 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNA 104 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccCH
Confidence 8999999999999999999999998543321 234444433322
Q ss_pred -----HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEE
Q 001570 794 -----FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGI 867 (1051)
Q Consensus 794 -----~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi 867 (1051)
++.+..++|+.+...+-..++|+|++|... +...+.+..++||||||+.|||.-+.++...+.+...+++.|++
T Consensus 105 ~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tll 184 (231)
T COG3840 105 EQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLL 184 (231)
T ss_pred HHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEE
Confidence 456777888888888888999999988554 46678999999999999999999999996666666667899999
Q ss_pred EeccChhhhh-CcccccccccceeE
Q 001570 868 VSTHLHGIFS-LPLKIKNAAYKAMG 891 (1051)
Q Consensus 868 ~~TH~~el~~-l~~~~~~i~~~~~~ 891 (1051)
|+||..+.+. +++....+.++.+.
T Consensus 185 mVTH~~~Da~~ia~~~~fl~~Gri~ 209 (231)
T COG3840 185 MVTHHPEDAARIADRVVFLDNGRIA 209 (231)
T ss_pred EEeCCHHHHHHhhhceEEEeCCEEE
Confidence 9999987664 44444444444443
No 174
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.73 E-value=1.9e-17 Score=199.74 Aligned_cols=149 Identities=20% Similarity=0.217 Sum_probs=112.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------------------hcceeecCCCCChh---
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------ICGLMVPAESASIP--- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------------------~~G~~vpa~~~~i~--- 792 (1051)
++.++++++| |++++|+||||||||||||+|+|++... ....|+|++...++
T Consensus 23 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 102 (510)
T PRK15439 23 GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLS 102 (510)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCc
Confidence 4679999999 8999999999999999999999986210 11236776643221
Q ss_pred -----------------hHHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHHHHHHH
Q 001570 793 -----------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGS 854 (1051)
Q Consensus 793 -----------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ 854 (1051)
.+..++..+++.+...+..+++|+|++|...+ .+.+.+|+++||||||+|||+.....+ ..
T Consensus 103 v~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l-~~ 181 (510)
T PRK15439 103 VKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERL-FS 181 (510)
T ss_pred HHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH-HH
Confidence 12345666777777778889999999985554 666899999999999999999888888 45
Q ss_pred HHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 855 IIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 855 ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
+++.+++.|.++|++||+.+++. ++++...+.++.+
T Consensus 182 ~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i 218 (510)
T PRK15439 182 RIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTI 218 (510)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 55556667999999999998764 5555444444444
No 175
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.73 E-value=1.6e-17 Score=189.20 Aligned_cols=148 Identities=14% Similarity=0.120 Sum_probs=107.2
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------hhcceeecCCC--CChh
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAES--ASIP 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------a~~G~~vpa~~--~~i~ 792 (1051)
..+++++|| |++++|+|+||||||||+|+|+|+... .....||||+. ...+
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 113 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP 113 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence 568999999 899999999999999999999998611 11234777764 1211
Q ss_pred ---hH-----------------------HHHHHhcCCC-CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCC
Q 001570 793 ---YF-----------------------DAIMLHMKSY-DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTE 844 (1051)
Q Consensus 793 ---~~-----------------------d~i~~~~~~~-d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD 844 (1051)
.. ..++..+++. +........+|+||+|... +.+.+.+|++||+||||+|||
T Consensus 114 ~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD 193 (331)
T PRK15079 114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD 193 (331)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 11 1234455663 2346667889999998555 466799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCcEEEEeccChhhhh-Cccccccccccee
Q 001570 845 TAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 845 ~~~~~~l~~~ile~L~~-~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
+..+..+.. ++..+.+ .|.|+||+|||++++. ++++...+..+.+
T Consensus 194 ~~~~~~i~~-lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 194 VSIQAQVVN-LLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred HHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999888854 5555554 5899999999999875 4554433333333
No 176
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.73 E-value=1.6e-17 Score=171.11 Aligned_cols=129 Identities=17% Similarity=0.182 Sum_probs=93.3
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------hcceeecCCCCChhhHHHHHHhcCCCCCc
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESASIPYFDAIMLHMKSYDSP 807 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------~~G~~vpa~~~~i~~~d~i~~~~~~~d~~ 807 (1051)
++.++++++| |++++|+||||||||||+++|+|+.... +...|+|++....+ ..+...+...
T Consensus 13 ~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~--~tv~~nl~~~--- 87 (166)
T cd03223 13 GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPL--GTLREQLIYP--- 87 (166)
T ss_pred CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcccc--ccHHHHhhcc---
Confidence 4578999998 8999999999999999999999986321 11246777653221 1222222111
Q ss_pred cCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcc
Q 001570 808 ADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 880 (1051)
Q Consensus 808 ~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~ 880 (1051)
....+|+++++.. .+.+.+.+|+++||||||+|+|+.....+...+ ..+ +.++|++||+.++...++
T Consensus 88 --~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l-~~~---~~tiiivsh~~~~~~~~d 155 (166)
T cd03223 88 --WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL-KEL---GITVISVGHRPSLWKFHD 155 (166)
T ss_pred --CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHH-HHh---CCEEEEEeCChhHHhhCC
Confidence 3567898888754 456669999999999999999998877774433 333 689999999988765443
No 177
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.2e-17 Score=184.19 Aligned_cols=147 Identities=11% Similarity=0.041 Sum_probs=105.2
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------------hhcceeecCCC--CCh
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAES--ASI 791 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------------a~~G~~vpa~~--~~i 791 (1051)
+.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+.. ..+
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF 99 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence 368999998 899999999999999999999998611 01124677653 111
Q ss_pred --hh---------------------HHHHHHhcCCCC-CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHH
Q 001570 792 --PY---------------------FDAIMLHMKSYD-SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETA 846 (1051)
Q Consensus 792 --~~---------------------~d~i~~~~~~~d-~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~ 846 (1051)
.. ++.++..+++.+ ........+|+|++|... +.+.+.+|+++||||||+|||+.
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 179 (280)
T PRK13649 100 EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK 179 (280)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 11 122334556653 356677889999988555 46679999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 847 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 847 ~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
....+. .++..+++.|.|+|++||+.+++. ++++...+..+.
T Consensus 180 ~~~~l~-~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 222 (280)
T PRK13649 180 GRKELM-TLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGK 222 (280)
T ss_pred HHHHHH-HHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCE
Confidence 888774 445555556899999999998764 455444444443
No 178
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.73 E-value=2.3e-17 Score=176.61 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=101.3
Q ss_pred eeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------hhcceeecCCCCChh---h------
Q 001570 745 HNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIP---Y------ 793 (1051)
Q Consensus 745 l~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------a~~G~~vpa~~~~i~---~------ 793 (1051)
+.+++| |++++|+||||||||||+|+|+|+... .+...|+|++...++ .
T Consensus 14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~ 93 (213)
T TIGR01277 14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGL 93 (213)
T ss_pred ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHh
Confidence 456776 899999999999999999999998621 112336666543221 1
Q ss_pred ---------------HHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Q 001570 794 ---------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIE 857 (1051)
Q Consensus 794 ---------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile 857 (1051)
+..++..+++.+........+|+|++|...+ .+.+.+|+++||||||+|+|+.....+...+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 173 (213)
T TIGR01277 94 GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQ 173 (213)
T ss_pred HhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 1224455566555566677899999885554 567899999999999999999888888554444
Q ss_pred HHHcCCcEEEEeccChhhhh-Cccccccccc
Q 001570 858 TLDNIGCLGIVSTHLHGIFS-LPLKIKNAAY 887 (1051)
Q Consensus 858 ~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~ 887 (1051)
..++.+.|+|++||+.++.. .+++.-.+.+
T Consensus 174 ~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~ 204 (213)
T TIGR01277 174 LCSERQRTLLMVTHHLSDARAIASQIAVVSQ 204 (213)
T ss_pred HHHhcCCEEEEEeCCHHHHHhhcCeEEEEEC
Confidence 43445899999999998753 4554333333
No 179
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.4e-17 Score=180.61 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=101.1
Q ss_pred eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCChh--hHHH
Q 001570 743 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP--YFDA 796 (1051)
Q Consensus 743 ~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i~--~~d~ 796 (1051)
.++++++| |++++|+||||||||||+|+|+|+... .+...++|++...++ ..+.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 95 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN 95 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHH
Confidence 68999988 899999999999999999999999621 111236666543221 1111
Q ss_pred H------------------------HHhc--CCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 797 I------------------------MLHM--KSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 797 i------------------------~~~~--~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
+ +..+ +...........+|+|++|... +.+.+.+|+++||||||+|||+....
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 175 (234)
T cd03251 96 IAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER 175 (234)
T ss_pred hhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 1 1111 2222233456688988888544 46668999999999999999998888
Q ss_pred HHHHHHHHHHHcCCcEEEEeccChhhhhCccccccccccee
Q 001570 850 CIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 890 (1051)
Q Consensus 850 ~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~ 890 (1051)
.+ ..++..+.+ +.++|++||+++++..+++...+.++.+
T Consensus 176 ~l-~~~l~~~~~-~~tii~~sh~~~~~~~~d~v~~l~~G~i 214 (234)
T cd03251 176 LV-QAALERLMK-NRTTFVIAHRLSTIENADRIVVLEDGKI 214 (234)
T ss_pred HH-HHHHHHhcC-CCEEEEEecCHHHHhhCCEEEEecCCeE
Confidence 88 555555554 8899999999988765554444444443
No 180
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.4e-17 Score=187.98 Aligned_cols=149 Identities=17% Similarity=0.139 Sum_probs=106.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----------------------------hhcceeecCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------------GICGLMVPAES 788 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----------------------------a~~G~~vpa~~ 788 (1051)
...+++++|| |++++|+|+||||||||+|+|+|+... .+...||||+.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 3579999999 899999999999999999999998520 01134777764
Q ss_pred CC--hh------------------------------hHHHHHHhcCCCCC---ccCCccchhHHHHHHHH-HHHHcCCCc
Q 001570 789 AS--IP------------------------------YFDAIMLHMKSYDS---PADGKSSFQVEMSEIRS-IVTATTSRS 832 (1051)
Q Consensus 789 ~~--i~------------------------------~~d~i~~~~~~~d~---~~~~~stfs~e~~~~~~-il~~a~~~s 832 (1051)
.. .+ .+.+++..+++.+. .......+|+||+|... +.+.+.+|+
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ 178 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCC
Confidence 21 11 01233455566532 34566789999998554 466799999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCcEEEEeccChhhhh-Cccccccccccee
Q 001570 833 LVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 833 LlLLDEp~~GlD~~~~~~l~~~ile~L~~-~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
+||+||||+|||+..+..+. .++..+.+ .|.|+||+|||++++. ++++...+..+.+
T Consensus 179 llilDEPts~LD~~~~~~i~-~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~i 237 (330)
T PRK15093 179 LLIADEPTNAMEPTTQAQIF-RLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQT 237 (330)
T ss_pred EEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999888885 44455555 5899999999999884 5554433333333
No 181
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.73 E-value=1.2e-17 Score=166.89 Aligned_cols=171 Identities=16% Similarity=0.162 Sum_probs=125.9
Q ss_pred eeecccCCcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH----------------hhhcceeec
Q 001570 726 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL----------------LGICGLMVP 785 (1051)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~----------------la~~G~~vp 785 (1051)
+.++++|.- -|..-|++++|+ |+++.|+|.+||||||+||||+-+.. ....|..+|
T Consensus 7 l~v~dlHK~----~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 7 LEVEDLHKR----YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred eehhHHHhh----cccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 444555432 156789999999 89999999999999999999998752 122343444
Q ss_pred CCC-----------------CChhh-------------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH
Q 001570 786 AES-----------------ASIPY-------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS 823 (1051)
Q Consensus 786 a~~-----------------~~i~~-------------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~ 823 (1051)
++. ...++ ...++..+|+.+........+|+|++|.+.
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~a 162 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVA 162 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHH
Confidence 432 22111 123556678888777888899999988666
Q ss_pred H-HHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeEEEEeCCceeee
Q 001570 824 I-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPT 902 (1051)
Q Consensus 824 i-l~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~~~~~~~~l~~~ 902 (1051)
| .+.+.+|+++|+||||+.|||+---++ ..++..|++.|.|.+++||.+.++.-. ...+.+.|-+..+..|++...
T Consensus 163 IARaLameP~vmLFDEPTSALDPElVgEV-Lkv~~~LAeEgrTMv~VTHEM~FAR~V--ss~v~fLh~G~iEE~G~P~qv 239 (256)
T COG4598 163 IARALAMEPEVMLFDEPTSALDPELVGEV-LKVMQDLAEEGRTMVVVTHEMGFARDV--SSHVIFLHQGKIEEEGPPEQV 239 (256)
T ss_pred HHHHHhcCCceEeecCCcccCCHHHHHHH-HHHHHHHHHhCCeEEEEeeehhHHHhh--hhheEEeecceecccCChHHH
Confidence 5 566999999999999999999776666 677888999999999999999998743 245666666666666665554
Q ss_pred e
Q 001570 903 W 903 (1051)
Q Consensus 903 y 903 (1051)
|
T Consensus 240 f 240 (256)
T COG4598 240 F 240 (256)
T ss_pred h
Confidence 4
No 182
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.73 E-value=2.6e-17 Score=163.63 Aligned_cols=151 Identities=15% Similarity=0.091 Sum_probs=122.8
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH------------------------hhhcceeecCCCCCh
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL------------------------LGICGLMVPAESASI 791 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~------------------------la~~G~~vpa~~~~i 791 (1051)
+...|++++++ |+.++|+||+||||||||-.++|+-. .+....||+|.+..+
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Li 100 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLI 100 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecc
Confidence 34578999998 89999999999999999999999851 122233677665554
Q ss_pred hh------------------------HHHHHHhcCCCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCHH
Q 001570 792 PY------------------------FDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETA 846 (1051)
Q Consensus 792 ~~------------------------~d~i~~~~~~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~~ 846 (1051)
|. ....+..+|..+.+.....++|++.+| ++.+.+.+..|++++-||||.+||..
T Consensus 101 p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~ 180 (228)
T COG4181 101 PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180 (228)
T ss_pred ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchh
Confidence 43 234677889988888888899987666 55567779999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeccChhhhhCccccccccccee
Q 001570 847 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 890 (1051)
Q Consensus 847 ~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~ 890 (1051)
.+..++..+...-.+.|.|.+++|||..++..+++...+..+++
T Consensus 181 Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l 224 (228)
T COG4181 181 TGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRL 224 (228)
T ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeeccee
Confidence 99999988888888899999999999999998877666655544
No 183
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1e-17 Score=169.74 Aligned_cols=147 Identities=15% Similarity=0.139 Sum_probs=119.2
Q ss_pred CcccccCCC-ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhc---------------ceeecCCCCChh
Q 001570 733 PYWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC---------------GLMVPAESASIP 792 (1051)
Q Consensus 733 ~~~~~~~~~-~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~---------------G~~vpa~~~~i~ 792 (1051)
+++.+|.+. ..++.|+|+ |++++++||+||||||||+.++|++..++. -..|+|+.+.+|
T Consensus 8 ~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlP 87 (259)
T COG4525 8 HLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLP 87 (259)
T ss_pred heEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccch
Confidence 344444422 348899988 899999999999999999999999843321 126788888887
Q ss_pred hH------------------------HHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHH
Q 001570 793 YF------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 793 ~~------------------------d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
|. ++.+..+|..+.-.+..-.+|++|+|...+ .+.+-+|++++||||+..+|...
T Consensus 88 Wl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~t 167 (259)
T COG4525 88 WLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALT 167 (259)
T ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHH
Confidence 73 244556688877788888999999997766 55689999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccChhhhhCc
Q 001570 848 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 879 (1051)
Q Consensus 848 ~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~ 879 (1051)
+..+-..+++..++.|+.++++||+.+++-+.
T Consensus 168 Re~mQelLldlw~~tgk~~lliTH~ieEAlfl 199 (259)
T COG4525 168 REQMQELLLDLWQETGKQVLLITHDIEEALFL 199 (259)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeccHHHHHhh
Confidence 99998889998899999999999999987643
No 184
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.73 E-value=2.8e-17 Score=178.91 Aligned_cols=139 Identities=14% Similarity=0.077 Sum_probs=97.4
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCChh--hHH
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP--YFD 795 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i~--~~d 795 (1051)
..++++++| |++++|+||||||||||+++|+|+... .+...|+|+....++ ..+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 95 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAE 95 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHH
Confidence 468999888 899999999999999999999998621 111335666532221 111
Q ss_pred HH---------------HHhc-----------CCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 796 AI---------------MLHM-----------KSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 796 ~i---------------~~~~-----------~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
.+ .... +...........+|+|+++...+ .+.+.+|+++||||||+|||+...
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~ 175 (238)
T cd03249 96 NIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175 (238)
T ss_pred HhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 11 0111 11222334457889999886554 556899999999999999999888
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccChhhhhCcccc
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 882 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~ 882 (1051)
..+ ..+++.+. .|.++|++||+.+++..+++.
T Consensus 176 ~~l-~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v 207 (238)
T cd03249 176 KLV-QEALDRAM-KGRTTIVIAHRLSTIRNADLI 207 (238)
T ss_pred HHH-HHHHHHhc-CCCEEEEEeCCHHHHhhCCEE
Confidence 887 45555555 689999999999987755443
No 185
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.73 E-value=2.7e-17 Score=198.13 Aligned_cols=150 Identities=13% Similarity=0.122 Sum_probs=111.8
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCCChh---
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIP--- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~~i~--- 792 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... .+.-.++|++...++
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK10762 16 GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLT 95 (501)
T ss_pred CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCc
Confidence 4679999999 899999999999999999999998621 011235665432110
Q ss_pred -------------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHH
Q 001570 793 -------------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETA 846 (1051)
Q Consensus 793 -------------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~ 846 (1051)
.+..++..+++.+...+..+++|+|++|...+ .+.+.+|+++||||||+|||+.
T Consensus 96 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 175 (501)
T PRK10762 96 IAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175 (501)
T ss_pred HHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHH
Confidence 12335566777776777788999999986554 5668999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeccChhhhh-CcccccccccceeE
Q 001570 847 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMG 891 (1051)
Q Consensus 847 ~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~~ 891 (1051)
....+ ..++..+++.|.++|++||+.+++. ++++...+.++.+.
T Consensus 176 ~~~~l-~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~ 220 (501)
T PRK10762 176 ETESL-FRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFI 220 (501)
T ss_pred HHHHH-HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 88888 5566666667899999999988764 55555445455443
No 186
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.73 E-value=2.7e-17 Score=177.56 Aligned_cols=141 Identities=19% Similarity=0.141 Sum_probs=101.1
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhh--------------cc-eeecCCCC----Ch-----
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------CG-LMVPAESA----SI----- 791 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~--------------~G-~~vpa~~~----~i----- 791 (1051)
+++.++++++| |++++|+||||||||||+++|+|+..... .+ .+.|.... .+
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~ 112 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLL 112 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHc
Confidence 45679999999 89999999999999999999999863110 00 01111000 00
Q ss_pred ----h----hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC
Q 001570 792 ----P----YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 862 (1051)
Q Consensus 792 ----~----~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~ 862 (1051)
. .+..++..+++.+........+|+|+++... +.+.+.+|+++||||||+|||+.....+...+ +.+.+.
T Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l-~~~~~~ 191 (224)
T cd03220 113 GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRL-RELLKQ 191 (224)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHhC
Confidence 0 1123445567766667777899999988554 56668999999999999999998888885555 445555
Q ss_pred CcEEEEeccChhhhh-Cccc
Q 001570 863 GCLGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 863 g~~vi~~TH~~el~~-l~~~ 881 (1051)
|.++|++||+.+++. .+++
T Consensus 192 ~~tiii~sH~~~~~~~~~d~ 211 (224)
T cd03220 192 GKTVILVSHDPSSIKRLCDR 211 (224)
T ss_pred CCEEEEEeCCHHHHHHhCCE
Confidence 899999999988764 4443
No 187
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=2.7e-17 Score=178.69 Aligned_cols=140 Identities=18% Similarity=0.162 Sum_probs=97.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh--------------------hcceeecCCCCChh--hH
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGLMVPAESASIP--YF 794 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la--------------------~~G~~vpa~~~~i~--~~ 794 (1051)
+..++++++| |++++|+||||||||||+|+|+|+.... +...|+|++...++ ..
T Consensus 13 ~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 92 (236)
T cd03253 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIG 92 (236)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHH
Confidence 4568999988 8999999999999999999999986211 11235666543221 11
Q ss_pred HHH---------------HHhcCC-----------CCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHH
Q 001570 795 DAI---------------MLHMKS-----------YDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 795 d~i---------------~~~~~~-----------~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
+.+ ....+. ..........+|+|+++.. .+.+.+.+|+++||||||+|||+..
T Consensus 93 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~ 172 (236)
T cd03253 93 YNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172 (236)
T ss_pred HHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 111 111111 1112233457888888854 4566799999999999999999988
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccc
Q 001570 848 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 882 (1051)
Q Consensus 848 ~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~ 882 (1051)
...+. .++..+++ |.++|++||+.+.+..+++.
T Consensus 173 ~~~l~-~~l~~~~~-~~tiii~sh~~~~~~~~d~~ 205 (236)
T cd03253 173 EREIQ-AALRDVSK-GRTTIVIAHRLSTIVNADKI 205 (236)
T ss_pred HHHHH-HHHHHhcC-CCEEEEEcCCHHHHHhCCEE
Confidence 88874 55555666 89999999999887654433
No 188
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.73 E-value=2.4e-17 Score=182.66 Aligned_cols=140 Identities=12% Similarity=0.124 Sum_probs=101.1
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCC--Chh---
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA--SIP--- 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~--~i~--- 792 (1051)
..++++++| |++++|+||||||||||||+|+|+... .+...|+|+... ..+
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t 105 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR 105 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchh
Confidence 469999999 899999999999999999999998721 112346666532 000
Q ss_pred ----------------------hHHHHHHhcCCC-CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 793 ----------------------YFDAIMLHMKSY-DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 793 ----------------------~~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
.+..++..+++. +......+.+|+|++|... +.+.+.+|+++||||||+|||+...
T Consensus 106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 185 (267)
T PRK15112 106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMR 185 (267)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHH
Confidence 012345556663 3344556789999988554 4667899999999999999999887
Q ss_pred HHHHHHHHHHHHc-CCcEEEEeccChhhhh-Ccccc
Q 001570 849 TCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKI 882 (1051)
Q Consensus 849 ~~l~~~ile~L~~-~g~~vi~~TH~~el~~-l~~~~ 882 (1051)
..+. .++..+.+ .|.++|++||+.+.+. .+++.
T Consensus 186 ~~l~-~~l~~~~~~~g~tviivsH~~~~~~~~~d~i 220 (267)
T PRK15112 186 SQLI-NLMLELQEKQGISYIYVTQHLGMMKHISDQV 220 (267)
T ss_pred HHHH-HHHHHHHHHcCcEEEEEeCCHHHHHHhcCEE
Confidence 7774 44444544 5899999999998765 34443
No 189
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.73 E-value=2.4e-17 Score=180.63 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=102.0
Q ss_pred eeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------------------hhcceeecCCCCChh--------
Q 001570 744 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP-------- 792 (1051)
Q Consensus 744 vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------------------a~~G~~vpa~~~~i~-------- 792 (1051)
++++++| |++++|+||||||||||+++|+|+... .+...|+|+....++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl 90 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL 90 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence 6888888 899999999999999999999998510 011236666532110
Q ss_pred ---------------hHHHHHHhcCCCCCccCCccchhHHHHHHHHHHH-HcC-------CCcEEEEcCCCCCCCHHHHH
Q 001570 793 ---------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVT-ATT-------SRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 793 ---------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~-~a~-------~~sLlLLDEp~~GlD~~~~~ 849 (1051)
.++.++..+++.+........+|+|++|...++. .+. +|+++||||||+|||+....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~ 170 (248)
T PRK03695 91 TLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA 170 (248)
T ss_pred HhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHH
Confidence 1234556667766667778899999998666544 454 67999999999999998888
Q ss_pred HHHHHHHHHHHcCCcEEEEeccChhhh-hCcccccc
Q 001570 850 CIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKN 884 (1051)
Q Consensus 850 ~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~ 884 (1051)
.+ ..++..+.+.|.|+|++||+.+++ ..++....
T Consensus 171 ~l-~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~ 205 (248)
T PRK03695 171 AL-DRLLSELCQQGIAVVMSSHDLNHTLRHADRVWL 205 (248)
T ss_pred HH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 87 455555666689999999998854 45554333
No 190
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.73 E-value=2.5e-17 Score=177.93 Aligned_cols=146 Identities=15% Similarity=0.197 Sum_probs=102.4
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH---hh-----------------hcceeecCCCCChh---hH
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---LG-----------------ICGLMVPAESASIP---YF 794 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~---la-----------------~~G~~vpa~~~~i~---~~ 794 (1051)
+.++++++| |++++|+||||||||||+|+|+|+.. .. +...++|++...++ ..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 578999988 89999999999999999999999864 21 11235666543221 11
Q ss_pred HH-------------------------HHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 795 DA-------------------------IMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 795 d~-------------------------i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
+. ++..++..+........+|+|+++.. .+.+.+.+|+++|||||++|+|+...
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~ 179 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHH
Confidence 11 22233333333455678898888744 45667899999999999999999888
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccCh--hhhhCcccccccccc
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLH--GIFSLPLKIKNAAYK 888 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~--el~~l~~~~~~i~~~ 888 (1051)
..+.. ++..+.+.|.|+|++||+. ++.+.+++...+.++
T Consensus 180 ~~~~~-~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G 220 (226)
T cd03234 180 LNLVS-TLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSG 220 (226)
T ss_pred HHHHH-HHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCC
Confidence 88854 5555655689999999997 455666654443333
No 191
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.73 E-value=2.3e-17 Score=178.78 Aligned_cols=144 Identities=10% Similarity=0.044 Sum_probs=100.3
Q ss_pred eeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----h------------------hcceeecCCCC--C---hhh
Q 001570 745 HNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----G------------------ICGLMVPAESA--S---IPY 793 (1051)
Q Consensus 745 l~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----a------------------~~G~~vpa~~~--~---i~~ 793 (1051)
+++++| |++++|+||||||||||+|+|+|+... . +.-.++|++.. . +..
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 466666 899999999999999999999998643 0 11235665532 1 110
Q ss_pred ---------------------HHHHHHhcCCC---CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 794 ---------------------FDAIMLHMKSY---DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 794 ---------------------~d~i~~~~~~~---d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
+.+++..+++. +........+|+|++|... +.+.+.+|+++||||||+|+|+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~ 161 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQ 161 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 12234445554 2345667889999888554 4666899999999999999999888
Q ss_pred HHHHHHHHHHHHc-CCcEEEEeccChhhhh-Ccccccccccce
Q 001570 849 TCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 849 ~~l~~~ile~L~~-~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
..+...+ ..+.+ .|.|+|++||+.+.+. .+++...+.++.
T Consensus 162 ~~l~~~l-~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 203 (230)
T TIGR02770 162 ARVLKLL-RELRQLFGTGILLITHDLGVVARIADEVAVMDDGR 203 (230)
T ss_pred HHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 8774444 44544 5899999999998764 555444444443
No 192
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.72 E-value=3.1e-17 Score=180.86 Aligned_cols=150 Identities=15% Similarity=0.141 Sum_probs=108.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH-----------------hh------------hcceeecCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-----------------LG------------ICGLMVPAE 787 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~-----------------la------------~~G~~vpa~ 787 (1051)
++.++++++| |++++|+||||||||||+|+|+|+.. +. +...|+|+.
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence 3578999998 89999999999999999999999861 11 013467766
Q ss_pred CCC-----hh----------------------hHHHHHHhcCCCC-CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcC
Q 001570 788 SAS-----IP----------------------YFDAIMLHMKSYD-SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDE 838 (1051)
Q Consensus 788 ~~~-----i~----------------------~~d~i~~~~~~~d-~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDE 838 (1051)
... +. .++.++..++..+ .......++|+|++|... +.+.+.+|+++||||
T Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE 177 (258)
T PRK11701 98 PRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE 177 (258)
T ss_pred cccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 420 00 0123455666653 456777899999988544 466799999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 839 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 839 p~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
||+|||+.....+...+.+...+.|.++|++||+.+++. .+++...+.++++
T Consensus 178 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i 230 (258)
T PRK11701 178 PTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRV 230 (258)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999988888754444433445899999999999875 5555444444444
No 193
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.72 E-value=2.4e-17 Score=177.98 Aligned_cols=137 Identities=12% Similarity=0.095 Sum_probs=98.8
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCChh--hH-
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP--YF- 794 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i~--~~- 794 (1051)
..++++++| |++++|+||||||||||+++|+|+... .+...++|+....++ ..
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~ 106 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQD 106 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHH
Confidence 468999999 899999999999999999999998621 111235665532211 01
Q ss_pred -----------------------HHHHHhc--CCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 795 -----------------------DAIMLHM--KSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 795 -----------------------d~i~~~~--~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
..++..+ |...........+|+|+++... +.+.+.+|+++||||||+|||+...
T Consensus 107 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 186 (226)
T cd03248 107 NIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186 (226)
T ss_pred HhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1122233 4444455667889999888544 4666999999999999999999988
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccChhhhhCcc
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 880 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~ 880 (1051)
..+...+. .+.+ +.|+|++||+++++..++
T Consensus 187 ~~l~~~l~-~~~~-~~tii~~sh~~~~~~~~d 216 (226)
T cd03248 187 QQVQQALY-DWPE-RRTVLVIAHRLSTVERAD 216 (226)
T ss_pred HHHHHHHH-HHcC-CCEEEEEECCHHHHHhCC
Confidence 88854444 4554 689999999999876543
No 194
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.4e-17 Score=187.43 Aligned_cols=149 Identities=12% Similarity=0.056 Sum_probs=108.7
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------hhcceeecCCCC--Chh
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESA--SIP 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------a~~G~~vpa~~~--~i~ 792 (1051)
..+++++|| |++++|+|+||||||||+++|+|+... .....+||++.. ..+
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 107 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP 107 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCC
Confidence 478999999 899999999999999999999998611 112347777641 111
Q ss_pred -------------------------hHHHHHHhcCCCC-CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCH
Q 001570 793 -------------------------YFDAIMLHMKSYD-SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTET 845 (1051)
Q Consensus 793 -------------------------~~d~i~~~~~~~d-~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~ 845 (1051)
.+.+++..+++.+ ........+|+||+|... +.+.+.+|++||+||||+|||+
T Consensus 108 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~ 187 (327)
T PRK11308 108 RKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187 (327)
T ss_pred ccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCH
Confidence 0233455666643 346677899999998554 5677999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 846 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 846 ~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
..+..+...+.+...+.|.++|++|||++++. ++++...+..+.+
T Consensus 188 ~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 188 SVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 98888855555443446999999999999875 5554444334433
No 195
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.72 E-value=2.6e-17 Score=189.38 Aligned_cols=145 Identities=15% Similarity=0.081 Sum_probs=105.9
Q ss_pred eEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh------------------------hcceeecCCCCChhh-----
Q 001570 747 TVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------ICGLMVPAESASIPY----- 793 (1051)
Q Consensus 747 ~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la------------------------~~G~~vpa~~~~i~~----- 793 (1051)
+++| |++++|+||||||||||||+|+|+.... +...++|++...++.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 6777 8999999999999999999999986210 112366666433221
Q ss_pred -----------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHH
Q 001570 794 -----------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSI 855 (1051)
Q Consensus 794 -----------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~i 855 (1051)
++.++..+++.+...+...++|+|++|... +.+.+.+|+++||||||+|||+.....+...+
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L 174 (354)
T TIGR02142 95 NLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL 174 (354)
T ss_pred HHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 233555667776677778899999998554 46679999999999999999998888885555
Q ss_pred HHHHHcCCcEEEEeccChhhhh-CcccccccccceeE
Q 001570 856 IETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMG 891 (1051)
Q Consensus 856 le~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~~ 891 (1051)
.+...+.|.|+|++||+.+.+. ++++...+.++.+.
T Consensus 175 ~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 211 (354)
T TIGR02142 175 ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVA 211 (354)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 4433445899999999998764 56555455555543
No 196
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5.9e-17 Score=179.56 Aligned_cols=148 Identities=15% Similarity=0.119 Sum_probs=103.6
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------------hhcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------GICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------------a~~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|++..
T Consensus 32 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 111 (267)
T PRK14237 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN 111 (267)
T ss_pred CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc
Confidence 4679999999 899999999999999999999998631 111245666543
Q ss_pred Chh--hHHH----------------------HHHhcCCC----CCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCC
Q 001570 790 SIP--YFDA----------------------IMLHMKSY----DSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~d~----------------------i~~~~~~~----d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~ 840 (1051)
.++ ..++ ++..+++. +.......++|+|+++.. .+.+.+.+|+++||||||
T Consensus 112 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt 191 (267)
T PRK14237 112 PFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPA 191 (267)
T ss_pred cccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 221 1111 12333432 234556678999988854 456668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCccccccccccee
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~ 890 (1051)
+|||+.....+. .++..+.+ +.++|++||+.+++ ..+++...+..+.+
T Consensus 192 ~~LD~~~~~~l~-~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i 240 (267)
T PRK14237 192 SALDPISTMQLE-ETMFELKK-NYTIIIVTHNMQQAARASDYTAFFYLGDL 240 (267)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 999998877774 45555654 78999999999875 45555444444443
No 197
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.72 E-value=2.9e-17 Score=174.21 Aligned_cols=140 Identities=19% Similarity=0.227 Sum_probs=97.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhH-Hhhhc----------------------ceeecCCCCChhh
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-LLGIC----------------------GLMVPAESASIPY 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~-~la~~----------------------G~~vpa~~~~i~~ 793 (1051)
++.++++++| |++++|+||||||||||+|+|+|+. ..... ..|+|+....++.
T Consensus 12 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (200)
T cd03217 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPG 91 (200)
T ss_pred CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccC
Confidence 4578999988 8999999999999999999999983 11111 2234443322211
Q ss_pred HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccC
Q 001570 794 FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 872 (1051)
Q Consensus 794 ~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~ 872 (1051)
. ...+.+......+|+|+++... +.+.+.+|+++||||||+|+|+.....+ ..++..+.+.+.|+|++||+
T Consensus 92 ~-------~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~~~L~~~~~~~~tiii~sh~ 163 (200)
T cd03217 92 V-------KNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLV-AEVINKLREEGKSVLIITHY 163 (200)
T ss_pred c-------cHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHHCCCEEEEEecC
Confidence 1 1111112222578888888544 4666899999999999999999888887 55555566668999999999
Q ss_pred hhhhh--Ccccccccccc
Q 001570 873 HGIFS--LPLKIKNAAYK 888 (1051)
Q Consensus 873 ~el~~--l~~~~~~i~~~ 888 (1051)
++.+. .+++...+..+
T Consensus 164 ~~~~~~~~~d~i~~l~~G 181 (200)
T cd03217 164 QRLLDYIKPDRVHVLYDG 181 (200)
T ss_pred HHHHHHhhCCEEEEEECC
Confidence 99876 45554443333
No 198
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.72 E-value=4.1e-17 Score=179.48 Aligned_cols=150 Identities=12% Similarity=0.072 Sum_probs=105.7
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------h----------------hcceeecCCCC-Ch-h
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------G----------------ICGLMVPAESA-SI-P 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------a----------------~~G~~vpa~~~-~i-~ 792 (1051)
++.+++++|| |++++|+||||||||||+|+|+|+... + +...|+|++.. .+ +
T Consensus 15 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~ 94 (254)
T PRK10418 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP 94 (254)
T ss_pred ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCc
Confidence 3568999998 899999999999999999999998632 1 11236666642 11 1
Q ss_pred ----------------------hHHHHHHhcCCCC---CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHH
Q 001570 793 ----------------------YFDAIMLHMKSYD---SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETA 846 (1051)
Q Consensus 793 ----------------------~~d~i~~~~~~~d---~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~ 846 (1051)
.+..++..+++.+ .+......+|+|++|... +.+.+.+|+++||||||+|||+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~ 174 (254)
T PRK10418 95 LHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVV 174 (254)
T ss_pred cccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence 0122344555544 245667889999888544 56679999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 847 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 847 ~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
....+...+.+...+.|.++|++||+++.+. .+++...+.++.+
T Consensus 175 ~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i 219 (254)
T PRK10418 175 AQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRI 219 (254)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 8888744444433445899999999998764 5555444444443
No 199
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=3.6e-17 Score=197.42 Aligned_cols=149 Identities=13% Similarity=0.137 Sum_probs=110.7
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------h-hcceeecCCCCChh---
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------G-ICGLMVPAESASIP--- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a-~~G~~vpa~~~~i~--- 792 (1051)
++.+++++|| |++++|+||||||||||+|+|+|+... . +...|+|++...++
T Consensus 17 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t 96 (510)
T PRK09700 17 PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELT 96 (510)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCc
Confidence 4679999999 899999999999999999999998621 0 11236666532111
Q ss_pred ----------------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCC
Q 001570 793 ----------------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGT 843 (1051)
Q Consensus 793 ----------------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~Gl 843 (1051)
.+..++..+++.+...+..+++|+|++|...+ .+.+.+|+++||||||+||
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~L 176 (510)
T PRK09700 97 VLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176 (510)
T ss_pred HHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 01234556677666677788999999986555 5668999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 844 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 844 D~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
|+.....+ ..++..+++.|.|+|++||+.+++. ++++...+.++.+
T Consensus 177 D~~~~~~l-~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i 223 (510)
T PRK09700 177 TNKEVDYL-FLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSS 223 (510)
T ss_pred CHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99888888 5566666667999999999988765 4554444444444
No 200
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.6e-17 Score=175.05 Aligned_cols=131 Identities=19% Similarity=0.226 Sum_probs=93.5
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-hhc-----------------ceeecCCCCChh---hHHH
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-GIC-----------------GLMVPAESASIP---YFDA 796 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-a~~-----------------G~~vpa~~~~i~---~~d~ 796 (1051)
+.++++++| |++++|+||||||||||+|+|+|+... ... ..++|+....++ ..+.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 99 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREA 99 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHH
Confidence 578999998 899999999999999999999997421 111 224555433222 2233
Q ss_pred HHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhh
Q 001570 797 IMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 875 (1051)
Q Consensus 797 i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el 875 (1051)
+..... ...+|+|+++... +.+.+.+|+++|||||++|+|+.....+ ..+++.+.+.|.|+|++||+++.
T Consensus 100 l~~~~~--------~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l-~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 100 LRFSAL--------LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNI-VRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred HHHHHH--------HhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHH-HHHHHHHHHcCCEEEEEEcCChH
Confidence 221000 0178888887554 4667899999999999999999888877 55566666678999999999873
Q ss_pred --hhCccc
Q 001570 876 --FSLPLK 881 (1051)
Q Consensus 876 --~~l~~~ 881 (1051)
...+++
T Consensus 171 ~~~~~~d~ 178 (192)
T cd03232 171 SIFEKFDR 178 (192)
T ss_pred HHHhhCCE
Confidence 455543
No 201
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.8e-17 Score=179.30 Aligned_cols=147 Identities=18% Similarity=0.152 Sum_probs=103.0
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------------hhcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------GICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------------a~~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|++..
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 4579999999 899999999999999999999997521 011235666543
Q ss_pred Chh--h---------------------HHHHHHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCC
Q 001570 790 SIP--Y---------------------FDAIMLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICR 841 (1051)
Q Consensus 790 ~i~--~---------------------~d~i~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~ 841 (1051)
.++ . +..++..++.. +........+|+|++|... +.+.+.+|+++||||||+
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 183 (258)
T PRK14268 104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTS 183 (258)
T ss_pred cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 221 1 11233444442 2234566789999888544 466689999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCcccccccccce
Q 001570 842 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 889 (1051)
Q Consensus 842 GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~ 889 (1051)
|+|+.....+ ..+++.+.+ +.|+|++||+.+++ +.+++...+..+.
T Consensus 184 ~LD~~~~~~l-~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~ 230 (258)
T PRK14268 184 ALDPISTARI-EDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGE 230 (258)
T ss_pred ccCHHHHHHH-HHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 9999888888 555555654 79999999999876 4455443333333
No 202
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=3e-17 Score=197.91 Aligned_cols=149 Identities=17% Similarity=0.204 Sum_probs=111.0
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----h-------------------hcceeecCCCCChh-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----G-------------------ICGLMVPAESASIP- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----a-------------------~~G~~vpa~~~~i~- 792 (1051)
++.+++++|| |++++|+||||||||||+|+|+|+... + +...|+|++...++
T Consensus 17 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 17 GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 4679999999 899999999999999999999998642 0 11235665432110
Q ss_pred --------------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCH
Q 001570 793 --------------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTET 845 (1051)
Q Consensus 793 --------------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~ 845 (1051)
.+..++..+++.+...+..+++|+|++|... +.+.+.+|+++||||||+|||+
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~ 176 (506)
T PRK13549 97 LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE 176 (506)
T ss_pred CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 1234556677766677788899999998555 4666899999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 846 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 846 ~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
.....+ ..++..+.+.|.++|++||+.+.+. .+++...+.++.+
T Consensus 177 ~~~~~l-~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i 221 (506)
T PRK13549 177 SETAVL-LDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRH 221 (506)
T ss_pred HHHHHH-HHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEE
Confidence 888888 4555556667899999999988764 4555444444444
No 203
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=3.3e-17 Score=188.39 Aligned_cols=144 Identities=17% Similarity=0.105 Sum_probs=106.5
Q ss_pred eEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh------------------------hcceeecCCCCChhh-----
Q 001570 747 TVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------ICGLMVPAESASIPY----- 793 (1051)
Q Consensus 747 ~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la------------------------~~G~~vpa~~~~i~~----- 793 (1051)
+++| |++++|+||||||||||+|+|+|+.... +...|+|++...++.
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 6777 8999999999999999999999986210 112366766543321
Q ss_pred -------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 001570 794 -------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 859 (1051)
Q Consensus 794 -------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L 859 (1051)
++.++..+++.+...+...++|+|++|... +.+.+.+|+++||||||+|||+.....+...+.+..
T Consensus 96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~ 175 (352)
T PRK11144 96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLA 175 (352)
T ss_pred HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 234566778877777888999999998554 466799999999999999999988888855554443
Q ss_pred HcCCcEEEEeccChhhh-hCccccccccccee
Q 001570 860 DNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 860 ~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~ 890 (1051)
++.|.|+|++||+++.+ .++++...+..+.+
T Consensus 176 ~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i 207 (352)
T PRK11144 176 REINIPILYVSHSLDEILRLADRVVVLEQGKV 207 (352)
T ss_pred HhcCCeEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 44589999999999865 45555444444443
No 204
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.8e-17 Score=183.09 Aligned_cols=140 Identities=16% Similarity=0.080 Sum_probs=103.7
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCC-Ch---hh
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA-SI---PY 793 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~-~i---~~ 793 (1051)
..++++++| |++++|+||||||||||+++|+|+... .+...|+|+... .+ ..
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATV 99 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCH
Confidence 458999998 899999999999999999999998621 111246666531 11 11
Q ss_pred H---------------------HHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHHHH
Q 001570 794 F---------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCI 851 (1051)
Q Consensus 794 ~---------------------d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~~l 851 (1051)
. +.++..+++.+........+|+|++|...+ .+.+.+|+++||||||+|||+.....+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l 179 (277)
T PRK13642 100 EDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179 (277)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 1 223444565555566678899999985554 666899999999999999999998888
Q ss_pred HHHHHHHHHc-CCcEEEEeccChhhhhCcccc
Q 001570 852 AGSIIETLDN-IGCLGIVSTHLHGIFSLPLKI 882 (1051)
Q Consensus 852 ~~~ile~L~~-~g~~vi~~TH~~el~~l~~~~ 882 (1051)
. .++..+.+ .|.|+|++||+++.+..+++.
T Consensus 180 ~-~~l~~l~~~~g~tiil~sH~~~~~~~~d~i 210 (277)
T PRK13642 180 M-RVIHEIKEKYQLTVLSITHDLDEAASSDRI 210 (277)
T ss_pred H-HHHHHHHHhcCCEEEEEeCCHHHHHhCCEE
Confidence 5 45555655 489999999999987655443
No 205
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.72 E-value=4.5e-17 Score=180.58 Aligned_cols=149 Identities=13% Similarity=0.069 Sum_probs=106.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------hhcceeecCCCC--Ch
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAESA--SI 791 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------a~~G~~vpa~~~--~i 791 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+... ..
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 103 (268)
T PRK10419 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVN 103 (268)
T ss_pred ceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccC
Confidence 3679999999 899999999999999999999998611 112335666531 10
Q ss_pred ---h----------------------hHHHHHHhcCCC-CCccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCC
Q 001570 792 ---P----------------------YFDAIMLHMKSY-DSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTE 844 (1051)
Q Consensus 792 ---~----------------------~~d~i~~~~~~~-d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD 844 (1051)
. .++.++..++.. +........+|+|+++. ..+.+.+.+|+++||||||+|||
T Consensus 104 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD 183 (268)
T PRK10419 104 PRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183 (268)
T ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 0 123355556664 34566778899888884 44566799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 845 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 845 ~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
+.....+...+.+...+.+.|+|++||+.+++. +++..-.+.++.
T Consensus 184 ~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~ 229 (268)
T PRK10419 184 LVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQ 229 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 988777744444433345899999999998765 555444443433
No 206
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.72 E-value=4.3e-17 Score=178.46 Aligned_cols=147 Identities=17% Similarity=0.170 Sum_probs=103.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------------------------hcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------------ICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------------------------~~G~~vpa~~~ 789 (1051)
+..++++++| |++++|+||||||||||+|+|+|+.... +...|+|++..
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (247)
T TIGR00972 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92 (247)
T ss_pred CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc
Confidence 3568999998 8999999999999999999999986321 11235555532
Q ss_pred Chh--hH----------------------HHHHHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 790 SIP--YF----------------------DAIMLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~----------------------d~i~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.++ .. ..++..+++. +........+|+|++|... +.+.+.+|+++||||||
T Consensus 93 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 172 (247)
T TIGR00972 93 PFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT 172 (247)
T ss_pred cCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 211 11 1233445555 4455667889999988554 46668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCcccccccccce
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 889 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~ 889 (1051)
+|||+.....+ ..++..+.+ +.|+|++||+.+.+ .++++...+.++.
T Consensus 173 ~~LD~~~~~~l-~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~ 220 (247)
T TIGR00972 173 SALDPIATGKI-EELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGE 220 (247)
T ss_pred ccCCHHHHHHH-HHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCE
Confidence 99999888887 455555655 48999999999865 4555443433433
No 207
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=3.8e-17 Score=183.10 Aligned_cols=146 Identities=11% Similarity=0.043 Sum_probs=103.5
Q ss_pred eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh-------------------------hcceeecCCCC--Ch
Q 001570 743 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------------ICGLMVPAESA--SI 791 (1051)
Q Consensus 743 ~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la-------------------------~~G~~vpa~~~--~i 791 (1051)
.++++++| |++++|+||||||||||+|+|+|+.... +...|+|+... .+
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 104 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF 104 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh
Confidence 58999999 8999999999999999999999986210 01236666531 11
Q ss_pred --hh---------------------HHHHHHhcCCC-CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHH
Q 001570 792 --PY---------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETA 846 (1051)
Q Consensus 792 --~~---------------------~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~ 846 (1051)
.. ++.++..+++. +......+.+|+|++|... +.+.+.+|+++||||||+|||+.
T Consensus 105 ~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~ 184 (289)
T PRK13645 105 QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPK 184 (289)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 11 12234455553 3455667889999988554 46678999999999999999998
Q ss_pred HHHHHHHHHHHHHH-cCCcEEEEeccChhhh-hCcccccccccce
Q 001570 847 KGTCIAGSIIETLD-NIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 889 (1051)
Q Consensus 847 ~~~~l~~~ile~L~-~~g~~vi~~TH~~el~-~l~~~~~~i~~~~ 889 (1051)
....+. .++..+. +.|.++|++||+.+.+ ..+++...+.++.
T Consensus 185 ~~~~l~-~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~ 228 (289)
T PRK13645 185 GEEDFI-NLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGK 228 (289)
T ss_pred HHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 887774 4444554 4589999999999865 4555444444443
No 208
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.72 E-value=3.4e-17 Score=174.05 Aligned_cols=137 Identities=16% Similarity=0.105 Sum_probs=97.8
Q ss_pred eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhc-------ceeecCCCCChh--hHH--------------
Q 001570 743 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-------GLMVPAESASIP--YFD-------------- 795 (1051)
Q Consensus 743 ~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~-------G~~vpa~~~~i~--~~d-------------- 795 (1051)
.++++++| |++++|+||||||||||+++|+|+...... -.|+|++...++ ..+
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~ 98 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYE 98 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHH
Confidence 69999998 899999999999999999999998632111 246676643211 111
Q ss_pred HHHHhcCC-----------CCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 001570 796 AIMLHMKS-----------YDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 863 (1051)
Q Consensus 796 ~i~~~~~~-----------~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g 863 (1051)
.....++. ..........+|+++++... +.+.+.+|+++|||||++|||+.....+...+++.+.+.|
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~ 178 (204)
T cd03250 99 KVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNN 178 (204)
T ss_pred HHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCC
Confidence 11111121 11223345778998888544 4666999999999999999999887888666666555558
Q ss_pred cEEEEeccChhhhhCc
Q 001570 864 CLGIVSTHLHGIFSLP 879 (1051)
Q Consensus 864 ~~vi~~TH~~el~~l~ 879 (1051)
.++|++||+++.+..+
T Consensus 179 ~tvi~~sh~~~~~~~~ 194 (204)
T cd03250 179 KTRILVTHQLQLLPHA 194 (204)
T ss_pred CEEEEEeCCHHHHhhC
Confidence 9999999999887653
No 209
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5.4e-17 Score=178.31 Aligned_cols=146 Identities=17% Similarity=0.160 Sum_probs=100.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--h-------------------------hhcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L-------------------------GICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--l-------------------------a~~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+|+|+|+.. . .+...|+|++..
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 97 (253)
T PRK14242 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN 97 (253)
T ss_pred CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC
Confidence 4579999998 89999999999999999999999741 0 011235666542
Q ss_pred Chh--hHHH----------------------HHHhcCCCC----CccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCC
Q 001570 790 SIP--YFDA----------------------IMLHMKSYD----SPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~d~----------------------i~~~~~~~d----~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~ 840 (1051)
.++ ..+. ++..+++.+ ........+|+|++|...+ .+.+.+|+++||||||
T Consensus 98 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt 177 (253)
T PRK14242 98 PFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPA 177 (253)
T ss_pred CCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 221 1111 222334322 2345567899999885554 5668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCcccccccccc
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 888 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~ 888 (1051)
+|||+.....+ ..++..+++ +.|+|++||+.+.+ ..+++...+..+
T Consensus 178 ~~LD~~~~~~l-~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v~~l~~G 224 (253)
T PRK14242 178 SALDPIATQKI-EELIHELKA-RYTIIIVTHNMQQAARVSDVTAFFYMG 224 (253)
T ss_pred ccCCHHHHHHH-HHHHHHHhc-CCeEEEEEecHHHHHHhCCEEEEEECC
Confidence 99999888888 445555654 78999999999876 445544333333
No 210
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.72 E-value=4.5e-17 Score=170.14 Aligned_cols=126 Identities=15% Similarity=0.142 Sum_probs=89.1
Q ss_pred eeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhh---------------------cceeecCCCC---Ch---h
Q 001570 744 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------------------CGLMVPAESA---SI---P 792 (1051)
Q Consensus 744 vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~---------------------~G~~vpa~~~---~i---~ 792 (1051)
++++++| |++++|+||||||||||+|+|+|+..... ...|+|++.. .+ .
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 94 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLS 94 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCc
Confidence 8888888 89999999999999999999999863211 1224444321 11 1
Q ss_pred hHHHHHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEecc
Q 001570 793 YFDAIMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 871 (1051)
Q Consensus 793 ~~d~i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH 871 (1051)
..+.+... ..+|+|+++.. .+.+.+.+|+++|||||++|+|+.....+ ..+++.+.+.|.++|++||
T Consensus 95 ~~e~l~~~-----------~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~~~tiii~sh 162 (182)
T cd03215 95 VAENIALS-----------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEI-YRLIRELADAGKAVLLISS 162 (182)
T ss_pred HHHHHHHH-----------hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHH-HHHHHHHHHCCCEEEEEeC
Confidence 11221110 01888888854 45666899999999999999999888888 4555556556899999999
Q ss_pred Chhhhh-Cccc
Q 001570 872 LHGIFS-LPLK 881 (1051)
Q Consensus 872 ~~el~~-l~~~ 881 (1051)
+++.+. ++++
T Consensus 163 ~~~~~~~~~d~ 173 (182)
T cd03215 163 ELDELLGLCDR 173 (182)
T ss_pred CHHHHHHhCCE
Confidence 987654 4443
No 211
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.71 E-value=3.7e-17 Score=186.21 Aligned_cols=148 Identities=14% Similarity=0.080 Sum_probs=106.3
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------------------------hcceeecCCCC-
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------------ICGLMVPAESA- 789 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------------------------~~G~~vpa~~~- 789 (1051)
..+++++|| |++++|+|+||||||||+++|+|+.... +...+||++..
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 568999999 8999999999999999999999987321 12346777642
Q ss_pred -Chh---h----------------------HHHHHHhcCCCC---CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCC
Q 001570 790 -SIP---Y----------------------FDAIMLHMKSYD---SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEI 839 (1051)
Q Consensus 790 -~i~---~----------------------~d~i~~~~~~~d---~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp 839 (1051)
..+ . +.+++..+++.+ ........+|+||+|... +.+.+.+|+|||+|||
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEP 188 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEP 188 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 111 0 122344455543 124566789999998554 4667999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-cCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 840 CRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~-~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
|+|||+..+..+.. ++..++ +.|.++||+|||++++. ++++...+..+.+
T Consensus 189 ts~LD~~~~~~i~~-lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~i 240 (330)
T PRK09473 189 TTALDVTVQAQIMT-LLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRT 240 (330)
T ss_pred CccCCHHHHHHHHH-HHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 99999999888855 444554 45899999999999875 5554443333433
No 212
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.71 E-value=3.7e-17 Score=175.57 Aligned_cols=142 Identities=13% Similarity=0.091 Sum_probs=101.3
Q ss_pred cCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------------hhcceeecCCCC
Q 001570 738 AAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESA 789 (1051)
Q Consensus 738 ~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------------a~~G~~vpa~~~ 789 (1051)
+.++..++++++| |++++|+|||||||||||++|+|+... .+.-.|+|++..
T Consensus 10 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 89 (218)
T cd03290 10 WGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPW 89 (218)
T ss_pred cCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCc
Confidence 3444678999998 899999999999999999999998611 011235666543
Q ss_pred Chh--hH--------------HHHHHhcCCCC-----------CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCC
Q 001570 790 SIP--YF--------------DAIMLHMKSYD-----------SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICR 841 (1051)
Q Consensus 790 ~i~--~~--------------d~i~~~~~~~d-----------~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~ 841 (1051)
.++ .. ..+...++..+ ........+|+|+++... +.+.+.+|+++||||||+
T Consensus 90 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~ 169 (218)
T cd03290 90 LLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFS 169 (218)
T ss_pred cccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 221 11 12222222211 112345789999988555 466689999999999999
Q ss_pred CCCHHHHHHHHHH-HHHHHHcCCcEEEEeccChhhhhCc
Q 001570 842 GTETAKGTCIAGS-IIETLDNIGCLGIVSTHLHGIFSLP 879 (1051)
Q Consensus 842 GlD~~~~~~l~~~-ile~L~~~g~~vi~~TH~~el~~l~ 879 (1051)
|||+.....+... +++.+++.|.|+|++||+.+....+
T Consensus 170 ~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~ 208 (218)
T cd03290 170 ALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHA 208 (218)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhC
Confidence 9999888888663 7777777789999999999876543
No 213
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.71 E-value=4.7e-17 Score=175.45 Aligned_cols=138 Identities=20% Similarity=0.184 Sum_probs=101.6
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----------h------------------hcceeecCCCC
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------G------------------ICGLMVPAESA 789 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----------a------------------~~G~~vpa~~~ 789 (1051)
..++++++| |++++|+||||||||||+|+|+|+... . +...++|+...
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 100 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR 100 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence 468999998 899999999999999999999998621 0 11236666543
Q ss_pred Chhh------------------------HHHHHHhcCCCCC-ccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCC
Q 001570 790 SIPY------------------------FDAIMLHMKSYDS-PADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGT 843 (1051)
Q Consensus 790 ~i~~------------------------~d~i~~~~~~~d~-~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~Gl 843 (1051)
.++. +..++..+++.+. .......+|+|++|... +.+.+.+|+++||||||+|+
T Consensus 101 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 180 (224)
T TIGR02324 101 VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASL 180 (224)
T ss_pred cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 2210 1224455566543 34567789999888554 45668999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccc
Q 001570 844 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 880 (1051)
Q Consensus 844 D~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~ 880 (1051)
|+.....+. .+++.+++.|+|+|++||+.+++. +++
T Consensus 181 D~~~~~~l~-~~l~~~~~~g~tii~vsH~~~~~~~~~d 217 (224)
T TIGR02324 181 DAANRQVVV-ELIAEAKARGAALIGIFHDEEVRELVAD 217 (224)
T ss_pred CHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcc
Confidence 998888884 555556667899999999998764 444
No 214
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=9e-17 Score=176.27 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=102.4
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhH--Hh-----h--------------------hcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--LL-----G--------------------ICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~--~l-----a--------------------~~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+|+|+|+. .. + +...|+|+...
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 15 DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 4578999998 8999999999999999999999862 11 0 11235666532
Q ss_pred Chh--h----------------------HHHHHHhcCCCC----CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 790 SIP--Y----------------------FDAIMLHMKSYD----SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~----------------------~d~i~~~~~~~d----~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.++ . ++.++..+++.+ ........+|+|+++... +.+.+.+|+++||||||
T Consensus 95 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 174 (250)
T PRK14245 95 PFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 211 1 122334445432 234556789999888544 56679999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCccccccccccee
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~ 890 (1051)
+|||+.....+ ..+++.+.+ +.++|++||+.+.+ +.+++.-.+.++.+
T Consensus 175 ~~LD~~~~~~l-~~~l~~~~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~ 223 (250)
T PRK14245 175 SALDPISTAKV-EELIHELKK-DYTIVIVTHNMQQAARVSDKTAFFYMGEM 223 (250)
T ss_pred ccCCHHHHHHH-HHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 99999888888 444455554 78999999999876 45555444444443
No 215
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.71 E-value=2.1e-17 Score=174.52 Aligned_cols=135 Identities=23% Similarity=0.262 Sum_probs=94.9
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhH--Hhhh-----------------cceeecCCCCChh---hHH
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--LLGI-----------------CGLMVPAESASIP---YFD 795 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~--~la~-----------------~G~~vpa~~~~i~---~~d 795 (1051)
+.++++++| |++++|+||||||||||+|+|+|+. .... ...++|++...++ ..+
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 101 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRE 101 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHH
Confidence 579999999 8999999999999999999999986 3211 1224555433222 223
Q ss_pred HHHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChh
Q 001570 796 AIMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 874 (1051)
Q Consensus 796 ~i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~e 874 (1051)
.+..... ...+|+|+++.. .+.+.+.+|+++|||||++|||+.....+ ..+++.+.+.|.|+|++||+++
T Consensus 102 ~i~~~~~--------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l-~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 102 TLMFAAK--------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQV-MSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred HHHHHHH--------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHHhCCCEEEEEecCch
Confidence 2221100 117888888754 45667899999999999999999888777 5555566666899999999985
Q ss_pred --hhhCccccccc
Q 001570 875 --IFSLPLKIKNA 885 (1051)
Q Consensus 875 --l~~l~~~~~~i 885 (1051)
+.+.+++...+
T Consensus 173 ~~~~~~~d~v~~l 185 (194)
T cd03213 173 SEIFELFDKLLLL 185 (194)
T ss_pred HHHHHhcCEEEEE
Confidence 33455544333
No 216
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=5.5e-17 Score=173.78 Aligned_cols=135 Identities=18% Similarity=0.140 Sum_probs=98.3
Q ss_pred eEee---ceEEEEEcCCCCCcchHHHHHHhhHHhh------------------------hcceeecCCCCChh---h---
Q 001570 747 TVDM---QSLFLLTGPNGGGKSSLLRSICAASLLG------------------------ICGLMVPAESASIP---Y--- 793 (1051)
Q Consensus 747 ~isl---g~i~~ItGpNGsGKSTLLk~I~gl~~la------------------------~~G~~vpa~~~~i~---~--- 793 (1051)
|++| .++++|+||||||||||+++|+|+.... +...|+|++...++ .
T Consensus 16 ~vsl~i~~e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 95 (214)
T cd03297 16 KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVREN 95 (214)
T ss_pred CceEEEcceeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHH
Confidence 7777 4899999999999999999999986210 11235666542211 1
Q ss_pred ----------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHH
Q 001570 794 ----------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSII 856 (1051)
Q Consensus 794 ----------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~il 856 (1051)
+..++..++..+........+|+|+++... +.+.+.+|+++||||||+|||+.....+. .++
T Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l 174 (214)
T cd03297 96 LAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLL-PEL 174 (214)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHH
Confidence 123455666666566777899999988544 46679999999999999999998888884 455
Q ss_pred HHHHc-CCcEEEEeccChhhhh-Ccccc
Q 001570 857 ETLDN-IGCLGIVSTHLHGIFS-LPLKI 882 (1051)
Q Consensus 857 e~L~~-~g~~vi~~TH~~el~~-l~~~~ 882 (1051)
..+.+ .|.|+|++||+.+... .+++.
T Consensus 175 ~~~~~~~~~tiii~sH~~~~~~~~~d~i 202 (214)
T cd03297 175 KQIKKNLNIPVIFVTHDLSEAEYLADRI 202 (214)
T ss_pred HHHHHHcCcEEEEEecCHHHHHHhcCEE
Confidence 55544 4899999999998764 44443
No 217
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=7e-17 Score=175.21 Aligned_cols=143 Identities=17% Similarity=0.143 Sum_probs=105.7
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh------------------hcceeecCCCCChh---h--
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIP---Y-- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la------------------~~G~~vpa~~~~i~---~-- 793 (1051)
++.++++++| |++++|+||||+|||||+|+|+|+.... +.-.++|++...++ .
T Consensus 12 ~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 91 (232)
T cd03300 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFE 91 (232)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHH
Confidence 4578999988 8999999999999999999999997221 11235565533221 1
Q ss_pred -------------------HHHHHHhcCCCCCccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 001570 794 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTETAKGTCIAG 853 (1051)
Q Consensus 794 -------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~ 853 (1051)
++.++..+++.+........+|+|+++. ..+.+.+.+|+++|||||++|+|+.....+ .
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l-~ 170 (232)
T cd03300 92 NIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM-Q 170 (232)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-H
Confidence 1234556677766777778999998884 445667999999999999999999888888 4
Q ss_pred HHHHHHHc-CCcEEEEeccChhhh-hCcccccc
Q 001570 854 SIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKN 884 (1051)
Q Consensus 854 ~ile~L~~-~g~~vi~~TH~~el~-~l~~~~~~ 884 (1051)
.++..+.+ .|.|+|++||+.+++ +.+++...
T Consensus 171 ~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~ 203 (232)
T cd03300 171 LELKRLQKELGITFVFVTHDQEEALTMSDRIAV 203 (232)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 55555554 489999999999875 44554333
No 218
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=6e-17 Score=183.68 Aligned_cols=148 Identities=12% Similarity=0.050 Sum_probs=107.3
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------h------------------------hcc
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------G------------------------ICG 781 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------a------------------------~~G 781 (1051)
..++++++| |++++|+||||||||||+|+|+|+... . +..
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 118 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV 118 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcE
Confidence 469999999 899999999999999999999998621 0 012
Q ss_pred eeecCCCC--Chh--h---------------------HHHHHHhcCCC-CCccCCccchhHHHHHHHH-HHHHcCCCcEE
Q 001570 782 LMVPAESA--SIP--Y---------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRS-IVTATTSRSLV 834 (1051)
Q Consensus 782 ~~vpa~~~--~i~--~---------------------~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~-il~~a~~~sLl 834 (1051)
.+||+... .++ . +..++..+++. +...+...++|+|++|... +.+.+.+|+++
T Consensus 119 g~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iL 198 (320)
T PRK13631 119 SMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEIL 198 (320)
T ss_pred EEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 36666531 111 1 12344556664 3456677889999988555 46669999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCccccccccccee
Q 001570 835 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 835 LLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~ 890 (1051)
||||||+|||+.....+ ..++..+.+.|.|+|++||+++.+ ..+++...+..+.+
T Consensus 199 LLDEPtsgLD~~~~~~l-~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i 254 (320)
T PRK13631 199 IFDEPTAGLDPKGEHEM-MQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254 (320)
T ss_pred EEECCccCCCHHHHHHH-HHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 99999999999888888 455555666689999999999865 55665444444443
No 219
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.71 E-value=6.7e-17 Score=177.55 Aligned_cols=149 Identities=17% Similarity=0.153 Sum_probs=105.8
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------h------------hcceeecCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------G------------ICGLMVPAE 787 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------a------------~~G~~vpa~ 787 (1051)
+..++++++| |++++|+||||||||||+|+|+|+... . +...++|++
T Consensus 15 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (253)
T TIGR02323 15 GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQN 94 (253)
T ss_pred CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeC
Confidence 3568999998 899999999999999999999998611 0 112455655
Q ss_pred CCC-----hh----------------------hHHHHHHhcCCC-CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcC
Q 001570 788 SAS-----IP----------------------YFDAIMLHMKSY-DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDE 838 (1051)
Q Consensus 788 ~~~-----i~----------------------~~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDE 838 (1051)
... .. .++.++..++.. .........+|+|+++... +.+.+.+|+++||||
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDE 174 (253)
T TIGR02323 95 PRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDE 174 (253)
T ss_pred cccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 310 00 012334555664 3456677889999988544 466799999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 839 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 839 p~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
||+|||+.....+...+.+...+.|.++|++||+.+++. .+++...+.++.
T Consensus 175 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~ 226 (253)
T TIGR02323 175 PTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGR 226 (253)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 999999988888855555544455899999999998775 454433333333
No 220
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.71 E-value=4.4e-17 Score=175.29 Aligned_cols=138 Identities=14% Similarity=0.166 Sum_probs=98.0
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCChh--h--
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP--Y-- 793 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i~--~-- 793 (1051)
+.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+....++ .
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~e 96 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRS 96 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHH
Confidence 479999999 899999999999999999999998521 112236666543221 1
Q ss_pred ------------HHHHHHhcCCCCC-----------ccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 794 ------------FDAIMLHMKSYDS-----------PADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 794 ------------~d~i~~~~~~~d~-----------~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
+...+..++..+. .......+|+|++|... +.+.+.+|+++|||||++|||+....
T Consensus 97 nl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~ 176 (221)
T cd03244 97 NLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176 (221)
T ss_pred HhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 1112223333222 22456789998888554 46669999999999999999998888
Q ss_pred HHHHHHHHHHHcCCcEEEEeccChhhhhCccc
Q 001570 850 CIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 881 (1051)
Q Consensus 850 ~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~ 881 (1051)
.+ ..+++.+.+ +.++|++||+.+++..+++
T Consensus 177 ~l-~~~l~~~~~-~~tii~~sh~~~~~~~~d~ 206 (221)
T cd03244 177 LI-QKTIREAFK-DCTVLTIAHRLDTIIDSDR 206 (221)
T ss_pred HH-HHHHHHhcC-CCEEEEEeCCHHHHhhCCE
Confidence 77 455555544 6899999999988765443
No 221
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.1e-16 Score=179.26 Aligned_cols=140 Identities=18% Similarity=0.168 Sum_probs=98.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--h-------------------------hhcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L-------------------------GICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--l-------------------------a~~G~~vpa~~~ 789 (1051)
+..+++|++| |++++|+||||||||||+|+|+|+.. . .+...|+|++..
T Consensus 51 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (286)
T PRK14275 51 EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130 (286)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC
Confidence 4569999998 89999999999999999999999631 0 011235666543
Q ss_pred Chh--hH----------------------HHHHHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 790 SIP--YF----------------------DAIMLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~----------------------d~i~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.++ .. ..++..+++. +........+|+|++|... +.+.+.+|+++||||||
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt 210 (286)
T PRK14275 131 PFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPT 210 (286)
T ss_pred CCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 221 11 1223333432 2345566789999988554 46678999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccc
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 882 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~ 882 (1051)
+|||+.....+. .+++.+.+ +.++|++||+++++. .+++.
T Consensus 211 ~gLD~~~~~~l~-~~L~~~~~-~~tvIivsH~~~~~~~~~d~i 251 (286)
T PRK14275 211 SALDPKATAKIE-DLIQELRG-SYTIMIVTHNMQQASRVSDYT 251 (286)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCeEEEEeCCHHHHHHhCCEE
Confidence 999998887774 45555654 589999999998864 44443
No 222
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.71 E-value=3.5e-17 Score=180.83 Aligned_cols=142 Identities=15% Similarity=0.096 Sum_probs=101.5
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhc-----c--eeecCCCCC---hhh------------
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-----G--LMVPAESAS---IPY------------ 793 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~-----G--~~vpa~~~~---i~~------------ 793 (1051)
.+..++++++| |++++|+||||||||||+++|+|+...... | .++++.... +..
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~ 114 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMG 114 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcC
Confidence 45678999998 899999999999999999999998632210 1 122222110 111
Q ss_pred ---------HHHHHHhcCCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 001570 794 ---------FDAIMLHMKSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 863 (1051)
Q Consensus 794 ---------~d~i~~~~~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g 863 (1051)
++.++..+++.+.+.....++|+|+++.. .+.+.+.+|+++|||||++|+|+.....+.. ++..+++.|
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~-~L~~~~~~g 193 (264)
T PRK13546 115 FKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLD-KIYEFKEQN 193 (264)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHCC
Confidence 12234445666666677789999988854 4566689999999999999999988777744 445556678
Q ss_pred cEEEEeccChhhhh-Ccccc
Q 001570 864 CLGIVSTHLHGIFS-LPLKI 882 (1051)
Q Consensus 864 ~~vi~~TH~~el~~-l~~~~ 882 (1051)
.++|++||+.+.+. .+++.
T Consensus 194 ~tiIiisH~~~~i~~~~d~i 213 (264)
T PRK13546 194 KTIFFVSHNLGQVRQFCTKI 213 (264)
T ss_pred CEEEEEcCCHHHHHHHcCEE
Confidence 99999999988754 44443
No 223
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.71 E-value=4.9e-17 Score=195.37 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=109.5
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh--------------------hcceeecCCCCC------
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGLMVPAESAS------ 790 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la--------------------~~G~~vpa~~~~------ 790 (1051)
+..+++++|| |++++|+||||||||||+|+|+|+.... +.-.++|+....
T Consensus 15 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 94 (490)
T PRK10938 15 DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPG 94 (490)
T ss_pred CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccc
Confidence 4568999998 8999999999999999999999986210 111245543210
Q ss_pred -----hh-------------hHHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHHHH
Q 001570 791 -----IP-------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCI 851 (1051)
Q Consensus 791 -----i~-------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~~l 851 (1051)
+. .+..++..+++.+...+..+++|+|++|...+ .+.+.+|+++||||||+|||+.....+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 174 (490)
T PRK10938 95 EDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL 174 (490)
T ss_pred hhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 00 12346677788777778889999999985554 666899999999999999999888888
Q ss_pred HHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 852 AGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 852 ~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
..++..+++.|.++|++||+.+.+. .+++...+..+.+
T Consensus 175 -~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i 213 (490)
T PRK10938 175 -AELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTL 213 (490)
T ss_pred -HHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 5555566666899999999988764 4444444444443
No 224
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.71 E-value=5.9e-17 Score=169.75 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=108.4
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhcc-eeecCCCCChhh-
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICG-LMVPAESASIPY- 793 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G-~~vpa~~~~i~~- 793 (1051)
+...++.++|| |++++|+||||+|||||||+|+|++. .++.| .|||+....+|.
T Consensus 14 G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~L 93 (237)
T COG0410 14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRL 93 (237)
T ss_pred cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhC
Confidence 55789999999 89999999999999999999999972 22233 377876554432
Q ss_pred ----------------------HHHHHHhcC-CCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 794 ----------------------FDAIMLHMK-SYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 794 ----------------------~d~i~~~~~-~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
.+.+|+.|- +.+...+.-.++|+|.+|+.. ..+.+.+|+++|||||+.||.|.-..
T Consensus 94 TVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~ 173 (237)
T COG0410 94 TVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 173 (237)
T ss_pred cHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHH
Confidence 223333331 223334555788988888544 57779999999999999999999888
Q ss_pred HHHHHHHHHHH-cCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 850 CIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 850 ~l~~~ile~L~-~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
.| ..+++.++ +.|.||+++.++...+. ++++.--+.++.+
T Consensus 174 ~I-~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Gri 215 (237)
T COG0410 174 EI-FEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRI 215 (237)
T ss_pred HH-HHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEE
Confidence 88 45555566 45889999999988874 4544333344443
No 225
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=9.2e-17 Score=176.18 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=102.5
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------h------------------hcceeecCCCCCh
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------G------------------ICGLMVPAESASI 791 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------a------------------~~G~~vpa~~~~i 791 (1051)
+..++++++| |++++|+||||||||||+++|+|+... + ....|+|+....+
T Consensus 15 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence 4578999998 899999999999999999999998531 0 1113566654322
Q ss_pred ---hhHHH-----------------------HHHhcCCCC----CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 792 ---PYFDA-----------------------IMLHMKSYD----SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 792 ---~~~d~-----------------------i~~~~~~~d----~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
...+. ++..+++.+ .......++|+|++|... +.+.+.+|+++||||||
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~ 174 (250)
T PRK14247 95 PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT 174 (250)
T ss_pred CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11222 223334422 245566789999988544 46668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCcccccccccce
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 889 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~ 889 (1051)
+|+|+.....+.. +++.+.+ +.++|++||+++.+ ..+++...+.++.
T Consensus 175 ~~LD~~~~~~l~~-~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~ 222 (250)
T PRK14247 175 ANLDPENTAKIES-LFLELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQ 222 (250)
T ss_pred ccCCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCe
Confidence 9999988888844 4455554 79999999999875 4555443333333
No 226
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=6.3e-17 Score=175.50 Aligned_cols=136 Identities=16% Similarity=0.102 Sum_probs=97.3
Q ss_pred eEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------hhcceeecCCCCChh---h--------
Q 001570 747 TVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIP---Y-------- 793 (1051)
Q Consensus 747 ~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------a~~G~~vpa~~~~i~---~-------- 793 (1051)
+++| |++++|+||||||||||+|+|+|+... .....|+|+....++ .
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 96 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL 96 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence 5666 899999999999999999999998621 011236666532211 1
Q ss_pred -------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 001570 794 -------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 859 (1051)
Q Consensus 794 -------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L 859 (1051)
+..++..+++..........+|+|+++... +.+.+.+|+++||||||+|||+.....+...+.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~ 176 (232)
T PRK10771 97 NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC 176 (232)
T ss_pred ccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 122344455555556667789999888555 456799999999999999999988888855454443
Q ss_pred HcCCcEEEEeccChhhhh-Ccccc
Q 001570 860 DNIGCLGIVSTHLHGIFS-LPLKI 882 (1051)
Q Consensus 860 ~~~g~~vi~~TH~~el~~-l~~~~ 882 (1051)
++.|.|+|++||+.+++. .+++.
T Consensus 177 ~~~~~tiii~sH~~~~~~~~~d~i 200 (232)
T PRK10771 177 QERQLTLLMVSHSLEDAARIAPRS 200 (232)
T ss_pred HhcCCEEEEEECCHHHHHHhCCEE
Confidence 445899999999999754 44443
No 227
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.71 E-value=6.4e-17 Score=170.85 Aligned_cols=137 Identities=20% Similarity=0.210 Sum_probs=98.7
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh----------------hcceeecCCCCCh---h------
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------ICGLMVPAESASI---P------ 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la----------------~~G~~vpa~~~~i---~------ 792 (1051)
+.+++ ++| |++++|+||||||||||+|+|+|+.... +...++|+....+ .
T Consensus 14 ~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~ 92 (195)
T PRK13541 14 KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLK 92 (195)
T ss_pred cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHH
Confidence 44554 887 8999999999999999999999986211 0112455432111 1
Q ss_pred ----------hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHc
Q 001570 793 ----------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN 861 (1051)
Q Consensus 793 ----------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~ 861 (1051)
.+..++..++..+...+..+.+|+|+++... +.+.+.+|+++||||||+|+|+.....+ ..+++...+
T Consensus 93 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l-~~~l~~~~~ 171 (195)
T PRK13541 93 FWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLL-NNLIVMKAN 171 (195)
T ss_pred HHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHh
Confidence 1123445556666666777899999988554 4666899999999999999999887777 455555556
Q ss_pred CCcEEEEeccChhhhhCcc
Q 001570 862 IGCLGIVSTHLHGIFSLPL 880 (1051)
Q Consensus 862 ~g~~vi~~TH~~el~~l~~ 880 (1051)
.|.++|++||+.+....++
T Consensus 172 ~~~tiii~sh~~~~i~~~~ 190 (195)
T PRK13541 172 SGGIVLLSSHLESSIKSAQ 190 (195)
T ss_pred CCCEEEEEeCCccccchhh
Confidence 7899999999988766543
No 228
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.71 E-value=7.1e-17 Score=194.04 Aligned_cols=149 Identities=21% Similarity=0.193 Sum_probs=109.8
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCCChh---
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIP--- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~~i~--- 792 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... .+.-.++|++...++
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS 89 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence 4578999999 899999999999999999999998621 011236666532110
Q ss_pred ------------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHH
Q 001570 793 ------------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 793 ------------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
.+..++..+++.....+...++|+|++|...+ .+.+.+|+++||||||+|||+..
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~ 169 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE 169 (491)
T ss_pred HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 12234555666666667788999999985554 56689999999999999999988
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 848 GTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 848 ~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
...+ ..++..+.+.|.++|++||+.+++. .+++...+.++.+
T Consensus 170 ~~~l-~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i 212 (491)
T PRK10982 170 VNHL-FTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQW 212 (491)
T ss_pred HHHH-HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 8888 5556666777999999999998764 4554444444443
No 229
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.70 E-value=5.8e-17 Score=179.92 Aligned_cols=140 Identities=13% Similarity=0.106 Sum_probs=100.6
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh----------------------------hcceeecCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------------ICGLMVPAES 788 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la----------------------------~~G~~vpa~~ 788 (1051)
++.+++++|| |++++|+||||||||||+|+|+|+.... ....++|+..
T Consensus 13 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 4579999998 8999999999999999999999986321 1123556543
Q ss_pred CC---hhhH-------------------------HHHHHhcCCCCCccCCccchhHHHHHHHHHH-HHc---------CC
Q 001570 789 AS---IPYF-------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIV-TAT---------TS 830 (1051)
Q Consensus 789 ~~---i~~~-------------------------d~i~~~~~~~d~~~~~~stfs~e~~~~~~il-~~a---------~~ 830 (1051)
.. .... ..++..+++.+......+++|+|+++...+. +.+ .+
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~ 172 (272)
T PRK13547 93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQP 172 (272)
T ss_pred CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCC
Confidence 21 1111 1233345555555566788999999866554 445 49
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCcEEEEeccChhhhh-Cccc
Q 001570 831 RSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 831 ~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~-~g~~vi~~TH~~el~~-l~~~ 881 (1051)
|+++||||||+|||+.....+.. +++.+.+ .|.++|++||+.+.+. .+++
T Consensus 173 p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tviiisH~~~~~~~~~d~ 224 (272)
T PRK13547 173 PRYLLLDEPTAALDLAHQHRLLD-TVRRLARDWNLGVLAIVHDPNLAARHADR 224 (272)
T ss_pred CCEEEEcCccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence 99999999999999998888855 4445544 4899999999998764 4543
No 230
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.70 E-value=8.5e-17 Score=194.70 Aligned_cols=148 Identities=12% Similarity=0.079 Sum_probs=107.0
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--hh------------------------------------
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--LG------------------------------------ 778 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--la------------------------------------ 778 (1051)
++.+++++|| |++++|+||||||||||||+|+|+.. ..
T Consensus 12 ~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 91 (520)
T TIGR03269 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP 91 (520)
T ss_pred CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence 4679999998 89999999999999999999999841 10
Q ss_pred -----------------hcceeecCC-CCChh---h---------------------HHHHHHhcCCCCCccCCccchhH
Q 001570 779 -----------------ICGLMVPAE-SASIP---Y---------------------FDAIMLHMKSYDSPADGKSSFQV 816 (1051)
Q Consensus 779 -----------------~~G~~vpa~-~~~i~---~---------------------~d~i~~~~~~~d~~~~~~stfs~ 816 (1051)
+...++|+. ...++ . ++.++..+++.+...+..+++|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 171 (520)
T TIGR03269 92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSG 171 (520)
T ss_pred cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCH
Confidence 011355664 22111 0 22345566776666677899999
Q ss_pred HHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccc
Q 001570 817 EMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 888 (1051)
Q Consensus 817 e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~ 888 (1051)
||+|...+ .+.+.+|+++||||||+|||+.....+...+.+..++.|.|||++||+.+.+. .+++...+.++
T Consensus 172 Gq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G 245 (520)
T TIGR03269 172 GEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENG 245 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 99985554 66689999999999999999988888854444433556899999999998764 45544333333
No 231
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.70 E-value=1.1e-16 Score=175.35 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=95.3
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH-hhh----------------------cceeecCCCCChhh
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-LGI----------------------CGLMVPAESASIPY 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~-la~----------------------~G~~vpa~~~~i~~ 793 (1051)
++.++++++| |++++|+||||||||||+|+|+|+.. ... .-.++|+....++.
T Consensus 13 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (248)
T PRK09580 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92 (248)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccc
Confidence 4578999998 89999999999999999999999831 111 12244554321111
Q ss_pred -------------------------------HHHHHHhcCCCC-CccCCc-cchhHHHHHHHH-HHHHcCCCcEEEEcCC
Q 001570 794 -------------------------------FDAIMLHMKSYD-SPADGK-SSFQVEMSEIRS-IVTATTSRSLVLIDEI 839 (1051)
Q Consensus 794 -------------------------------~d~i~~~~~~~d-~~~~~~-stfs~e~~~~~~-il~~a~~~sLlLLDEp 839 (1051)
++.++..++..+ ...... ..+|+|+++... +.+.+.+|+++|||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEP 172 (248)
T PRK09580 93 VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 172 (248)
T ss_pred hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 011222223321 122223 269999988554 4666899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
|+|||+.....+ ..+++.+++.|.|+|++||+++++..
T Consensus 173 t~~LD~~~~~~l-~~~l~~l~~~~~tiii~sH~~~~~~~ 210 (248)
T PRK09580 173 DSGLDIDALKIV-ADGVNSLRDGKRSFIIVTHYQRILDY 210 (248)
T ss_pred CccCCHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 999999888877 55556677678999999999988764
No 232
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.70 E-value=6e-17 Score=168.12 Aligned_cols=121 Identities=12% Similarity=0.041 Sum_probs=83.6
Q ss_pred CceeeeeE-ee--ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHH
Q 001570 741 GSAVHNTV-DM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 817 (1051)
Q Consensus 741 ~~~vl~~i-sl--g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e 817 (1051)
++.++++. ++ |++++|+||||||||||+|+|+|+.... .|...-.. ..+.+.. +.. .+|++
T Consensus 12 ~~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g-~~i~~~~---------q~~-----~LSgG 75 (177)
T cd03222 12 VFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDG-ITPVYKP---------QYI-----DLSGG 75 (177)
T ss_pred CEEEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECC-EEEEEEc---------ccC-----CCCHH
Confidence 34555553 33 8999999999999999999999986432 22211111 0011110 000 18888
Q ss_pred HHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh
Q 001570 818 MSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 818 ~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
+++... +.+.+.+|+++||||||+|+|+.....+...+.+...+.+.++|++||+++.+.
T Consensus 76 q~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 76 ELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 888554 466689999999999999999988888855555443333489999999998765
No 233
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.70 E-value=3.7e-17 Score=192.13 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=106.0
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhc-----ce--eecCCC---CChh---------------
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-----GL--MVPAES---ASIP--------------- 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~-----G~--~vpa~~---~~i~--------------- 792 (1051)
+.++++++| |++++|+||||||||||||+|+|+...... |. +++... ..+.
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~ 116 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLT 116 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCC
Confidence 468999998 899999999999999999999998632110 10 011000 0000
Q ss_pred ------hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcE
Q 001570 793 ------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCL 865 (1051)
Q Consensus 793 ------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~ 865 (1051)
.++.++..+++.+........+|+|++|... +++.+.+|+++||||||+|||+.....+. .++..+++.|.+
T Consensus 117 ~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~Ll-elL~el~~~G~T 195 (549)
T PRK13545 117 KEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCL-DKMNEFKEQGKT 195 (549)
T ss_pred HHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH-HHHHHHHhCCCE
Confidence 1123555667766677788899999998554 46678999999999999999998888874 445556667899
Q ss_pred EEEeccChhhhh-Cccccccccccee
Q 001570 866 GIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 866 vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
+|++||+++.+. ++++...+.++.+
T Consensus 196 IIIVSHdl~~i~~l~DrIivL~~GkI 221 (549)
T PRK13545 196 IFFISHSLSQVKSFCTKALWLHYGQV 221 (549)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEE
Confidence 999999998764 4555444444444
No 234
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.4e-16 Score=176.52 Aligned_cols=140 Identities=16% Similarity=0.246 Sum_probs=99.5
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----hhc-----------------------ceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GIC-----------------------GLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----a~~-----------------------G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... ... ..|+|+...
T Consensus 31 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 110 (267)
T PRK14235 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110 (267)
T ss_pred CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC
Confidence 4679999999 899999999999999999999998632 011 135565532
Q ss_pred Chh--hH-----------------------HHHHHhcCCCC----CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCC
Q 001570 790 SIP--YF-----------------------DAIMLHMKSYD----SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEI 839 (1051)
Q Consensus 790 ~i~--~~-----------------------d~i~~~~~~~d----~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp 839 (1051)
.++ .. ..++..+++.+ .......++|+|++|... +.+.+.+|+++|||||
T Consensus 111 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 190 (267)
T PRK14235 111 PFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEP 190 (267)
T ss_pred CCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 221 11 12333344432 234456789999888544 4667899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccc
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 882 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~ 882 (1051)
|+|||+.....+ ..+++.+.+ +.|+|++||+.+.+. .+++.
T Consensus 191 t~~LD~~~~~~l-~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v 232 (267)
T PRK14235 191 CSALDPIATAKV-EELIDELRQ-NYTIVIVTHSMQQAARVSQRT 232 (267)
T ss_pred CcCCCHHHHHHH-HHHHHHHhc-CCeEEEEEcCHHHHHhhCCEE
Confidence 999999888877 555555655 689999999998864 44433
No 235
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.70 E-value=9.8e-17 Score=193.23 Aligned_cols=148 Identities=15% Similarity=0.129 Sum_probs=108.4
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCCChh---
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIP--- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~~i~--- 792 (1051)
+..++++++| |++++|+||||||||||+|+|+|+... .+.-.|+|+....++
T Consensus 16 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK11288 16 GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMT 95 (501)
T ss_pred CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCC
Confidence 4579999999 899999999999999999999998621 011236666532111
Q ss_pred h------------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHH
Q 001570 793 Y------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 793 ~------------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
. +..++..+++.+......+++|+|++|... +.+.+.+|+++||||||+|||+..
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (501)
T PRK11288 96 VAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175 (501)
T ss_pred HHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHH
Confidence 1 223455666666666778899999998555 466689999999999999999988
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 848 GTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 848 ~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
...+ ..++..+.+.|.++|++||+.+++. ++++...+.++.
T Consensus 176 ~~~l-~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~ 217 (501)
T PRK11288 176 IEQL-FRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGR 217 (501)
T ss_pred HHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 8888 5555556667899999999998764 455443333443
No 236
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=9.1e-17 Score=176.65 Aligned_cols=140 Identities=19% Similarity=0.175 Sum_probs=98.3
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------------------------hcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------------ICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------------------------~~G~~vpa~~~ 789 (1051)
+..++++++| |++++|+||||||||||+|+|+|+.... +...|+|++..
T Consensus 19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (254)
T PRK14273 19 DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN 98 (254)
T ss_pred CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccc
Confidence 4578999998 8999999999999999999999986421 01235555532
Q ss_pred Ch--hhHHH----------------------HHHhcCC----CCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 790 SI--PYFDA----------------------IMLHMKS----YDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i--~~~d~----------------------i~~~~~~----~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.+ ...+. ++..++. .+........+|+|++|... +.+.+.+|+++||||||
T Consensus 99 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt 178 (254)
T PRK14273 99 PFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPT 178 (254)
T ss_pred cccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 21 11121 1222232 12234456789999988554 46668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccc
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 882 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~ 882 (1051)
+|||+.....+. .++..+++ +.|+|++||+.+++. .+++.
T Consensus 179 ~~LD~~~~~~l~-~~l~~~~~-~~tvii~sH~~~~~~~~~d~i 219 (254)
T PRK14273 179 SALDPISTGKIE-ELIINLKE-SYTIIIVTHNMQQAGRISDRT 219 (254)
T ss_pred cccCHHHHHHHH-HHHHHHhc-CCEEEEEeCCHHHHHHhCCEE
Confidence 999998888884 45555654 789999999998764 45443
No 237
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.70 E-value=5.8e-17 Score=171.01 Aligned_cols=137 Identities=18% Similarity=0.187 Sum_probs=102.5
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----------------------hhcce--------eec
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGL--------MVP 785 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----------------------a~~G~--------~vp 785 (1051)
+++.+++|++. |+-++|+|||||||||||++++|-... .++|. |-+
T Consensus 42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~ 121 (257)
T COG1119 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRV 121 (257)
T ss_pred CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhccc
Confidence 67899999998 899999999999999999999997521 12221 001
Q ss_pred CC----------CCCh------------hhHHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCC
Q 001570 786 AE----------SASI------------PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRG 842 (1051)
Q Consensus 786 a~----------~~~i------------~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~G 842 (1051)
.. ++.+ .....+++.+|......+...++|.|++++..| .+.+.+|.|+|||||++|
T Consensus 122 ~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~G 201 (257)
T COG1119 122 RETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQG 201 (257)
T ss_pred ccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcccc
Confidence 00 0011 113456778888888888889999999886665 566899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcC--CcEEEEeccChhhhh
Q 001570 843 TETAKGTCIAGSIIETLDNI--GCLGIVSTHLHGIFS 877 (1051)
Q Consensus 843 lD~~~~~~l~~~ile~L~~~--g~~vi~~TH~~el~~ 877 (1051)
+|...+..+...+.+ +... +.++|+|||+.|.+-
T Consensus 202 LDl~~re~ll~~l~~-~~~~~~~~~ll~VtHh~eEi~ 237 (257)
T COG1119 202 LDLIAREQLLNRLEE-LAASPGAPALLFVTHHAEEIP 237 (257)
T ss_pred CChHHHHHHHHHHHH-HhcCCCCceEEEEEcchhhcc
Confidence 999888777444444 4433 788999999988754
No 238
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.2e-16 Score=176.49 Aligned_cols=147 Identities=17% Similarity=0.183 Sum_probs=101.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------h--------------------hcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------G--------------------ICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------a--------------------~~G~~vpa~~~ 789 (1051)
+..++++++| |++++|+||||||||||+|+|+|+... + +...|+|++..
T Consensus 25 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 104 (260)
T PRK10744 25 KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104 (260)
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc
Confidence 4579999998 899999999999999999999998520 0 11225565532
Q ss_pred Chh--hH----------------------HHHHHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 790 SIP--YF----------------------DAIMLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~----------------------d~i~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.++ .. .+++..++.. +.......++|+|++|... +.+.+.+|+++||||||
T Consensus 105 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 184 (260)
T PRK10744 105 PFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPC 184 (260)
T ss_pred cCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 221 11 1223333432 2234556789999888554 46668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
+|||+.....+ ..+++.+++ +.|+|++||+.+.+. .+++...+.++.
T Consensus 185 ~~LD~~~~~~l-~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~ 232 (260)
T PRK10744 185 SALDPISTGRI-EELITELKQ-DYTVVIVTHNMQQAARCSDYTAFMYLGE 232 (260)
T ss_pred ccCCHHHHHHH-HHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999887777 445555554 689999999998763 455443333333
No 239
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=1e-16 Score=193.30 Aligned_cols=147 Identities=16% Similarity=0.121 Sum_probs=107.7
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----------------------hhcceeecCCCC---Ch
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESA---SI 791 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----------------------a~~G~~vpa~~~---~i 791 (1051)
+..++++++| |++++|+||||||||||+|+|+|+... .+.-.|+|+... .+
T Consensus 274 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 4568999998 899999999999999999999998531 011236666521 10
Q ss_pred ---h--------------------------hHHHHHHhcCCC-CCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCC
Q 001570 792 ---P--------------------------YFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEIC 840 (1051)
Q Consensus 792 ---~--------------------------~~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~ 840 (1051)
. .++.++..+++. +...+...++|+|++|...+ .+.+.+|+++||||||
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt 433 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPT 433 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 0 123355566764 45667788999999986555 5668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccc
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 888 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~ 888 (1051)
+|||+.....+ ..+++.+++.|.|+|++|||++++. ++++...+.++
T Consensus 434 ~~LD~~~~~~l-~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G 481 (506)
T PRK13549 434 RGIDVGAKYEI-YKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEG 481 (506)
T ss_pred CCcCHhHHHHH-HHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 99999888887 6666667777999999999998764 45543333333
No 240
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=9.8e-17 Score=174.42 Aligned_cols=144 Identities=17% Similarity=0.127 Sum_probs=104.2
Q ss_pred eeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh------------------hcceeecCCCCChhh--------
Q 001570 744 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIPY-------- 793 (1051)
Q Consensus 744 vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la------------------~~G~~vpa~~~~i~~-------- 793 (1051)
++++++| |++++|+||||||||||+++|+|+.... +...++|++...++.
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 7999998 8999999999999999999999986211 122356655332210
Q ss_pred ----------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHH
Q 001570 794 ----------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSII 856 (1051)
Q Consensus 794 ----------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~il 856 (1051)
+..++..+++...+.....++|+|+++... +.+.+.+|+++||||||+|+|+.....+ +.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l-~~~l 172 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL-REEL 172 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHH-HHHH
Confidence 123445566666666777889998888544 4667899999999999999999888877 5555
Q ss_pred HHHHc-CCcEEEEeccChhhhh-Ccccccccccc
Q 001570 857 ETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYK 888 (1051)
Q Consensus 857 e~L~~-~g~~vi~~TH~~el~~-l~~~~~~i~~~ 888 (1051)
+.+.. .|+|+|++||+.+++. .+++...+..+
T Consensus 173 ~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G 206 (235)
T cd03299 173 KKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNG 206 (235)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 55554 4899999999998754 45544333333
No 241
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.70 E-value=1.3e-16 Score=175.21 Aligned_cols=137 Identities=18% Similarity=0.221 Sum_probs=96.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH-h---------------------hhcc-eeecCCCCChh-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-L---------------------GICG-LMVPAESASIP- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~-l---------------------a~~G-~~vpa~~~~i~- 792 (1051)
+..++++++| |++++|+||||||||||+++|+|+.. - .+.+ .++|+....++
T Consensus 19 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 98 (252)
T CHL00131 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPG 98 (252)
T ss_pred CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccccccc
Confidence 4579999998 89999999999999999999999720 0 0111 23444421111
Q ss_pred ------------------------------hHHHHHHhcCCCC-CccCCcc-chhHHHHHHHH-HHHHcCCCcEEEEcCC
Q 001570 793 ------------------------------YFDAIMLHMKSYD-SPADGKS-SFQVEMSEIRS-IVTATTSRSLVLIDEI 839 (1051)
Q Consensus 793 ------------------------------~~d~i~~~~~~~d-~~~~~~s-tfs~e~~~~~~-il~~a~~~sLlLLDEp 839 (1051)
.+..++..+++.+ ....... .+|+|+++... +.+.+.+|+++|||||
T Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 178 (252)
T CHL00131 99 VSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDET 178 (252)
T ss_pred ccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 0122344455542 3344444 59999888554 4666899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
|+|||+.....+. .++..+.+.|.|+|++||+.+++..
T Consensus 179 t~~LD~~~~~~l~-~~l~~~~~~g~tii~~tH~~~~~~~ 216 (252)
T CHL00131 179 DSGLDIDALKIIA-EGINKLMTSENSIILITHYQRLLDY 216 (252)
T ss_pred cccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHh
Confidence 9999998888884 5555565668999999999988753
No 242
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.4e-16 Score=176.70 Aligned_cols=147 Identities=19% Similarity=0.178 Sum_probs=100.8
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH-h--------------------------hhcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-L--------------------------GICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~-l--------------------------a~~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+|+|+|+.. . .+...|+|++..
T Consensus 33 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 112 (268)
T PRK14248 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN 112 (268)
T ss_pred CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCc
Confidence 4679999998 89999999999999999999999642 0 011235666543
Q ss_pred Chh--hHHH----------------------HHHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 790 SIP--YFDA----------------------IMLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~d~----------------------i~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.++ ..++ ++..++.. +........+|+|++|... +.+.+.+|+++||||||
T Consensus 113 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 192 (268)
T PRK14248 113 PFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPA 192 (268)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 221 1111 12222332 1234556789999988544 46668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
+|||+.....+ ..++..+.+ +.|+|++||+.+.+. .+++...+.++.
T Consensus 193 ~~LD~~~~~~l-~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~ 240 (268)
T PRK14248 193 SALDPISNAKI-EELITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGD 240 (268)
T ss_pred cccCHHHHHHH-HHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCE
Confidence 99999888888 555555654 689999999988653 454433333333
No 243
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.70 E-value=4.2e-17 Score=216.16 Aligned_cols=151 Identities=14% Similarity=0.087 Sum_probs=116.6
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------------------hhcceeecCCCCChhh-----
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIPY----- 793 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------------------a~~G~~vpa~~~~i~~----- 793 (1051)
+.++++++| |++++|+||||||||||+|+|+|+... .+.-.|+|+..+.++.
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E 2031 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGRE 2031 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHH
Confidence 679999999 899999999999999999999998621 1123477876543211
Q ss_pred -------------------HHHHHHhcCCCCCccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 001570 794 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTETAKGTCIAG 853 (1051)
Q Consensus 794 -------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~ 853 (1051)
++.++..+++.+...+...++|+|++|. ..+++.+.+|+++||||||+|+||..+..+ +
T Consensus 2032 ~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l-~ 2110 (2272)
T TIGR01257 2032 HLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRML-W 2110 (2272)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-H
Confidence 1234556777666677789999999985 455777999999999999999999888888 6
Q ss_pred HHHHHHHcCCcEEEEeccChhhhh-CcccccccccceeEEE
Q 001570 854 SIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTE 893 (1051)
Q Consensus 854 ~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~~~~ 893 (1051)
.+++.+++.|++||++||++++++ ++++...+.++.+...
T Consensus 2111 ~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~ 2151 (2272)
T TIGR01257 2111 NTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCL 2151 (2272)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 677777667999999999999875 5666555556665544
No 244
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.7e-16 Score=173.72 Aligned_cols=146 Identities=14% Similarity=0.087 Sum_probs=102.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH---h--------------------hhcceeecCCCCChh-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---L--------------------GICGLMVPAESASIP- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~---l--------------------a~~G~~vpa~~~~i~- 792 (1051)
++.++++++| |++++|+||||||||||+|+|+|+.. . .+...|+|++...++
T Consensus 14 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~ 93 (246)
T PRK14269 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVK 93 (246)
T ss_pred CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccc
Confidence 4578999999 89999999999999999999999841 0 011236666543211
Q ss_pred -h-----------------------HHHHHHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCC
Q 001570 793 -Y-----------------------FDAIMLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGT 843 (1051)
Q Consensus 793 -~-----------------------~d~i~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~Gl 843 (1051)
. +..++..+++. +........+|+|+++... +.+.+.+|+++||||||+|+
T Consensus 94 tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~L 173 (246)
T PRK14269 94 SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSAL 173 (246)
T ss_pred cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 1 12334455553 2234556788999888554 46668999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccc
Q 001570 844 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 888 (1051)
Q Consensus 844 D~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~ 888 (1051)
|+.....+. .++..+.+ +.|+|++||+.+++. .+++...+.++
T Consensus 174 D~~~~~~l~-~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 174 DPISSGVIE-ELLKELSH-NLSMIMVTHNMQQGKRVADYTAFFHLG 217 (246)
T ss_pred CHHHHHHHH-HHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEEECC
Confidence 998887774 44444554 889999999998654 45543333333
No 245
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.2e-16 Score=175.43 Aligned_cols=148 Identities=16% Similarity=0.217 Sum_probs=103.4
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--h-------------------------hhcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L-------------------------GICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--l-------------------------a~~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+|+|+|+.. . .+...|+|++..
T Consensus 17 ~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 96 (251)
T PRK14244 17 SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96 (251)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc
Confidence 4578999998 89999999999999999999999852 0 011236666543
Q ss_pred Chh--hHH-----------------------HHHHhcCCCC----CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCC
Q 001570 790 SIP--YFD-----------------------AIMLHMKSYD----SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEI 839 (1051)
Q Consensus 790 ~i~--~~d-----------------------~i~~~~~~~d----~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp 839 (1051)
.++ ..+ .++..+++.+ ........+|+|++|... +.+.+.+|+++|||||
T Consensus 97 ~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 176 (251)
T PRK14244 97 PFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEP 176 (251)
T ss_pred cccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 221 111 2334445433 233455778999888544 4666899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
|+|||+.....+ ..++..+.+ +.|+|++||+.+++. .+++...+.++.+
T Consensus 177 t~~LD~~~~~~l-~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i 226 (251)
T PRK14244 177 CSALDPVATNVI-ENLIQELKK-NFTIIVVTHSMKQAKKVSDRVAFFQSGRI 226 (251)
T ss_pred CccCCHHHHHHH-HHHHHHHhc-CCeEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 999999887777 455555654 899999999998764 5555444444443
No 246
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.2e-16 Score=175.45 Aligned_cols=148 Identities=19% Similarity=0.170 Sum_probs=102.4
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--h-------------------------hhcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L-------------------------GICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--l-------------------------a~~G~~vpa~~~ 789 (1051)
++.+++|++| |++++|+||||||||||+|+|+|+.. . .+...++|++..
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 4579999998 89999999999999999999999852 1 011235666532
Q ss_pred Chh---hH----------------------HHHHHhcCCCC----CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCC
Q 001570 790 SIP---YF----------------------DAIMLHMKSYD----SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEI 839 (1051)
Q Consensus 790 ~i~---~~----------------------d~i~~~~~~~d----~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp 839 (1051)
.++ .. +.++..+++.. ........+|+|++|... +.+.+.+|+++|||||
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 175 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEP 175 (252)
T ss_pred CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 221 11 12223344422 233456779999888554 4566899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCccccccccccee
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~ 890 (1051)
|+|+|+.....+ ..+++.+.+ +.|+|++||+.+++ +.+++...+.++.+
T Consensus 176 ~~gLD~~~~~~l-~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14256 176 ASALDPISTLKI-EELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDL 225 (252)
T ss_pred cccCCHHHHHHH-HHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEE
Confidence 999999888887 455555655 58999999999876 45555444444433
No 247
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.4e-16 Score=175.68 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=102.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------hh--------------------cceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------GI--------------------CGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------a~--------------------~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+++|+|+... ++ .-.|+|++..
T Consensus 24 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 103 (259)
T PRK14274 24 QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103 (259)
T ss_pred CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc
Confidence 4579999999 899999999999999999999998531 10 1125555532
Q ss_pred Chh--hH----------------------HHHHHhcCCCC----CccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCC
Q 001570 790 SIP--YF----------------------DAIMLHMKSYD----SPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~----------------------d~i~~~~~~~d----~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~ 840 (1051)
.++ .. +.++..++..+ .+.....++|+|++|...+ .+.+.+|+++||||||
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 183 (259)
T PRK14274 104 PFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPT 183 (259)
T ss_pred ccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 211 11 11233344422 2345667889998885554 5668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
+|||+.....+ ..++..+.+ +.++|++||+.+.+. .+++...+.++.+
T Consensus 184 ~~LD~~~~~~l-~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i 232 (259)
T PRK14274 184 SALDPVSTRKI-EELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGEL 232 (259)
T ss_pred ccCCHHHHHHH-HHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEE
Confidence 99999888877 555555655 789999999998754 4554444444443
No 248
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.69 E-value=7.2e-17 Score=177.43 Aligned_cols=138 Identities=17% Similarity=0.177 Sum_probs=101.4
Q ss_pred ceeeeeEee---ceEEEEEcCCCCCcchHHHHHHhhHHhh--hc--------------c-----------------eeec
Q 001570 742 SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLG--IC--------------G-----------------LMVP 785 (1051)
Q Consensus 742 ~~vl~~isl---g~i~~ItGpNGsGKSTLLk~I~gl~~la--~~--------------G-----------------~~vp 785 (1051)
+.+++++++ |++++|+||||||||||||+|+|+.... ++ | .++|
T Consensus 14 ~~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (255)
T cd03236 14 SFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP 93 (255)
T ss_pred chhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence 357778777 8999999999999999999999987311 00 1 1222
Q ss_pred CCCCChh------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHH
Q 001570 786 AESASIP------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETA 846 (1051)
Q Consensus 786 a~~~~i~------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~ 846 (1051)
+....++ .+..++..+++.+.......++|+++++...+ .+.+.+|+++||||||+|+|+.
T Consensus 94 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~ 173 (255)
T cd03236 94 QYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK 173 (255)
T ss_pred chhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 2211111 12345667777776777788999999885554 5668999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccc
Q 001570 847 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 880 (1051)
Q Consensus 847 ~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~ 880 (1051)
....+ ..+++.+.+.++++|++||+++++. +++
T Consensus 174 ~~~~l-~~~l~~l~~~~~tIIiiSHd~~~~~~~ad 207 (255)
T cd03236 174 QRLNA-ARLIRELAEDDNYVLVVEHDLAVLDYLSD 207 (255)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 88888 4555566666899999999998866 344
No 249
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.69 E-value=1.1e-16 Score=192.68 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=107.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----h-------------------hcceeecCCCCChh-
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----G-------------------ICGLMVPAESASIP- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----a-------------------~~G~~vpa~~~~i~- 792 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... + +.-.|+|+....++
T Consensus 13 ~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 4579999998 899999999999999999999998632 0 11236666532111
Q ss_pred --h-------------------------HHHHHHhcCCCCCc-cCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCC
Q 001570 793 --Y-------------------------FDAIMLHMKSYDSP-ADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGT 843 (1051)
Q Consensus 793 --~-------------------------~d~i~~~~~~~d~~-~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~Gl 843 (1051)
. +..++..+++.+.. .....++|+|++|...+ .+.+.+|+++||||||+||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~L 172 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 1 12344555665443 35578999999985554 5668999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 844 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 844 D~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
|+.....+ ..+++.+++.|.++|++||+.+.+. .+++...+..+.
T Consensus 173 D~~~~~~l-~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~ 218 (500)
T TIGR02633 173 TEKETEIL-LDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218 (500)
T ss_pred CHHHHHHH-HHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCe
Confidence 99888888 5555666777999999999988764 455444443443
No 250
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.69 E-value=8.2e-17 Score=178.73 Aligned_cols=139 Identities=14% Similarity=0.100 Sum_probs=99.0
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH-------------------hhhcceeecCCCCChhh--HH
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-------------------LGICGLMVPAESASIPY--FD 795 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~-------------------la~~G~~vpa~~~~i~~--~d 795 (1051)
+..++++++| |++++|+||||||||||+++|+|+.. +.+...++|++...++. .+
T Consensus 16 ~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~ 95 (275)
T cd03289 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRK 95 (275)
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHH
Confidence 4578999999 89999999999999999999999862 11223577877644321 11
Q ss_pred --------------HHHHhcCCCCCccCC-----------ccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 796 --------------AIMLHMKSYDSPADG-----------KSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 796 --------------~i~~~~~~~d~~~~~-----------~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
..+..+++.+..... -+.+|+|++|...+ .+.+.+|+++||||||+|+|+....
T Consensus 96 nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~ 175 (275)
T cd03289 96 NLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQ 175 (275)
T ss_pred HhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHH
Confidence 222333433322222 23499999885554 6668999999999999999998887
Q ss_pred HHHHHHHHHHHcCCcEEEEeccChhhhhCccc
Q 001570 850 CIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 881 (1051)
Q Consensus 850 ~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~ 881 (1051)
.+...+. .+. .++|+|++||+++.+..+++
T Consensus 176 ~l~~~l~-~~~-~~~tii~isH~~~~i~~~dr 205 (275)
T cd03289 176 VIRKTLK-QAF-ADCTVILSEHRIEAMLECQR 205 (275)
T ss_pred HHHHHHH-Hhc-CCCEEEEEECCHHHHHhCCE
Confidence 7754444 443 48999999999988765443
No 251
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.8e-16 Score=173.99 Aligned_cols=148 Identities=17% Similarity=0.170 Sum_probs=101.0
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--h-----h--------------------hcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L-----G--------------------ICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--l-----a--------------------~~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+|+|+|+.. . + +...++|++..
T Consensus 16 ~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 16 NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 4579999998 89999999999999999999999863 0 0 01224555532
Q ss_pred Ch--hhHH----------------------HHHHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 790 SI--PYFD----------------------AIMLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i--~~~d----------------------~i~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.+ ...+ .++..+++. +.......++|+|++|... +.+.+.+|+++|||||+
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~ 175 (251)
T PRK14251 96 PFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175 (251)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 21 1111 223333442 2234556788998888544 46678999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
+|||+.....+ ..+++.+.+ +.|+|++||+.+++. .+++...+.++.+
T Consensus 176 ~~LD~~~~~~l-~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i 224 (251)
T PRK14251 176 SALDPISSSEI-EETLMELKH-QYTFIMVTHNLQQAGRISDQTAFLMNGDL 224 (251)
T ss_pred ccCCHHHHHHH-HHHHHHHHc-CCeEEEEECCHHHHHhhcCEEEEEECCEE
Confidence 99999887777 455555554 689999999998754 4554433334433
No 252
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.6e-16 Score=191.95 Aligned_cols=138 Identities=9% Similarity=0.062 Sum_probs=104.1
Q ss_pred eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCC---CCh---
Q 001570 743 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAES---ASI--- 791 (1051)
Q Consensus 743 ~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~---~~i--- 791 (1051)
.+++++|| |++++|+||||||||||+|+|+|+... .+.-.|+|+.. ..+
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 356 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF 356 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC
Confidence 37999998 899999999999999999999998511 01124677641 111
Q ss_pred --------h----------------------hHHHHHHhcCCC-CCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCC
Q 001570 792 --------P----------------------YFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEI 839 (1051)
Q Consensus 792 --------~----------------------~~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp 839 (1051)
+ .+++++..+++. +...+...++|+|++|...+ .+.+.+|+++|||||
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP 436 (510)
T PRK09700 357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEP 436 (510)
T ss_pred cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCC
Confidence 0 023456667775 56777889999999985554 566899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccc
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~ 881 (1051)
|+|||+.....+ ..+++.+.+.|.++|++|||.+++. .+++
T Consensus 437 t~~LD~~~~~~l-~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~ 478 (510)
T PRK09700 437 TRGIDVGAKAEI-YKVMRQLADDGKVILMVSSELPEIITVCDR 478 (510)
T ss_pred CCCcCHHHHHHH-HHHHHHHHHCCCEEEEEcCCHHHHHhhCCE
Confidence 999999888887 5566666667999999999998764 4443
No 253
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.1e-16 Score=174.28 Aligned_cols=139 Identities=18% Similarity=0.226 Sum_probs=98.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------h--------------------hcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------G--------------------ICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------a--------------------~~G~~vpa~~~ 789 (1051)
+..++++++| |++++|+||||||||||+|+|+|+... + +...++|+...
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 16 SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 4578999998 899999999999999999999998631 0 01224555432
Q ss_pred Chh---hHH----------------------HHHHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCC
Q 001570 790 SIP---YFD----------------------AIMLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEI 839 (1051)
Q Consensus 790 ~i~---~~d----------------------~i~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp 839 (1051)
.++ ..+ .++..+++. +.......++|+|++|... +.+.+.+|+++|||||
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEP 175 (258)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 221 111 122333432 2344556789999888544 4666899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccc
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~ 881 (1051)
|+|||+.....+ ..++..+++ +.|+|++||+.+.+. .+++
T Consensus 176 t~~LD~~~~~~l-~~~l~~~~~-~~tviivsH~~~~~~~~~d~ 216 (258)
T PRK14241 176 CSALDPISTLAI-EDLINELKQ-DYTIVIVTHNMQQAARVSDQ 216 (258)
T ss_pred CccCCHHHHHHH-HHHHHHHhc-CCEEEEEecCHHHHHHhCCE
Confidence 999999888888 555555654 689999999998753 4543
No 254
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.69 E-value=1.4e-16 Score=192.35 Aligned_cols=137 Identities=12% Similarity=0.165 Sum_probs=102.7
Q ss_pred eeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCC---CCh---h
Q 001570 744 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAES---ASI---P 792 (1051)
Q Consensus 744 vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~---~~i---~ 792 (1051)
++++++| |++++|+||||||||||+|+|+|+... ...-.|+|+.. ..+ .
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 5888888 899999999999999999999998511 01124677642 000 0
Q ss_pred ------------------------hHHHHHHhcCCC-CCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHH
Q 001570 793 ------------------------YFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETA 846 (1051)
Q Consensus 793 ------------------------~~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~ 846 (1051)
.++.++..+++. +...+..+.+|+||+|...+ .+.+.+|+++||||||+|||+.
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 022455666775 56677788999999985554 5668999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccc
Q 001570 847 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 847 ~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~ 881 (1051)
....+ ..++..+.+.|.++|++|||++++. ++++
T Consensus 438 ~~~~l-~~~l~~l~~~g~tiIivsHd~~~i~~~~d~ 472 (510)
T PRK15439 438 ARNDI-YQLIRSIAAQNVAVLFISSDLEEIEQMADR 472 (510)
T ss_pred HHHHH-HHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 88888 5566666667999999999998875 4443
No 255
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.69 E-value=1.5e-16 Score=191.59 Aligned_cols=148 Identities=17% Similarity=0.168 Sum_probs=108.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh----------------------hcceeecCCCC---Ch
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------ICGLMVPAESA---SI 791 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la----------------------~~G~~vpa~~~---~i 791 (1051)
+..++++++| |++++|+||||||||||+|+|+|+.... +.-.|+|++.. .+
T Consensus 272 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 272 HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 3568999998 8999999999999999999999986310 01135555521 10
Q ss_pred h-----------------------------hHHHHHHhcCCCC-CccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCC
Q 001570 792 P-----------------------------YFDAIMLHMKSYD-SPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEIC 840 (1051)
Q Consensus 792 ~-----------------------------~~d~i~~~~~~~d-~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~ 840 (1051)
+ .+++++..++..+ ...+...++|+|++|...+ .+.+.+|+++||||||
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt 431 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT 431 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 0 1234566677753 4677788999999986555 5668899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
+|||+.....+ ..+++.+.+.|.++|++|||++++. ++++...+.++.
T Consensus 432 ~~LD~~~~~~l-~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 480 (500)
T TIGR02633 432 RGVDVGAKYEI-YKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGK 480 (500)
T ss_pred CCcCHhHHHHH-HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 99999887777 5666677777999999999998764 455443333333
No 256
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.7e-16 Score=191.23 Aligned_cols=138 Identities=16% Similarity=0.185 Sum_probs=103.2
Q ss_pred eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------h-------------hcceeecCCCC---Chh--
Q 001570 743 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------G-------------ICGLMVPAESA---SIP-- 792 (1051)
Q Consensus 743 ~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------a-------------~~G~~vpa~~~---~i~-- 792 (1051)
.+++++|| |++++|+||||||||||+|+|+|+... . +.-.|+|+... .++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 47889988 899999999999999999999998510 0 11225555421 100
Q ss_pred ----------------------------hHHHHHHhcCCC-CCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCC
Q 001570 793 ----------------------------YFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRG 842 (1051)
Q Consensus 793 ----------------------------~~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~G 842 (1051)
.+.+++..+++. +.......++|+||+|...+ .+.+.+|+|+||||||+|
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 122355566773 55677888999999986555 556889999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccc
Q 001570 843 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 843 lD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~ 881 (1051)
||+.....+ ..+++.+.+.|.++|++|||.+++. ++++
T Consensus 427 LD~~~~~~l-~~~l~~l~~~g~tviivsHd~~~~~~~~d~ 465 (501)
T PRK11288 427 IDVGAKHEI-YNVIYELAAQGVAVLFVSSDLPEVLGVADR 465 (501)
T ss_pred CCHhHHHHH-HHHHHHHHhCCCEEEEECCCHHHHHhhCCE
Confidence 999988888 5566667777999999999998774 4444
No 257
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.9e-16 Score=172.28 Aligned_cols=147 Identities=18% Similarity=0.191 Sum_probs=100.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------------hhcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------GICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------------a~~G~~vpa~~~ 789 (1051)
+..++++++| |++++|+||||||||||+|+|+|+... .+...++|++..
T Consensus 15 ~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 4578999999 899999999999999999999997521 011235665533
Q ss_pred Chh--hHHH----------------------HHHhcCCCC----CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 790 SIP--YFDA----------------------IMLHMKSYD----SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~d~----------------------i~~~~~~~d----~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.++ ..+. .+..++..+ ........+|+|+++... +.+.+.+|+++||||||
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~ 174 (250)
T PRK14262 95 PFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 211 1111 122233322 134456788998888554 46668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCcccccccccce
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 889 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~ 889 (1051)
+|||+.....+ ..++..+.+ +.|+|++||+.+.+ ..+++.-.+.++.
T Consensus 175 ~~LD~~~~~~l-~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~ 222 (250)
T PRK14262 175 SALDPIATQRI-EKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGE 222 (250)
T ss_pred cccCHHHHHHH-HHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999888887 555555554 68999999999854 4555433333333
No 258
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2e-16 Score=173.77 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=101.0
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------------------------hcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------------ICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------------------------~~G~~vpa~~~ 789 (1051)
+..++++++| |++++|+||||||||||+|+|+|+.... +...|+|+...
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 16 SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95 (253)
T ss_pred CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence 4579999999 8999999999999999999999985321 01235555532
Q ss_pred Chh---hHH-----------------------HHHHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcC
Q 001570 790 SIP---YFD-----------------------AIMLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDE 838 (1051)
Q Consensus 790 ~i~---~~d-----------------------~i~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDE 838 (1051)
.++ ..+ .++..++.. +........+|+|++|... +.+.+.+|+++||||
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 175 (253)
T PRK14267 96 PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175 (253)
T ss_pred cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 221 111 122333432 1234556788988888554 466689999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 839 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 839 p~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
||+|||+.....+. .+++.+.+ +.|+|++||+.+.+. .+++...+.++.
T Consensus 176 P~~~LD~~~~~~l~-~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~ 225 (253)
T PRK14267 176 PTANIDPVGTAKIE-ELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGK 225 (253)
T ss_pred CCccCCHHHHHHHH-HHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECCE
Confidence 99999998888774 44445554 689999999998754 455443333433
No 259
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.69 E-value=2e-16 Score=168.60 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=95.9
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCChh--hHH
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP--YFD 795 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i~--~~d 795 (1051)
..++++++| |++++|+||||||||||+|+|+|+... .+.-.|+|++...++ ..+
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ 100 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRS 100 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHH
Confidence 468999998 899999999999999999999998621 122346777653322 111
Q ss_pred HH-----------HHhcCCCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 001570 796 AI-----------MLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG 863 (1051)
Q Consensus 796 ~i-----------~~~~~~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g 863 (1051)
.+ ...+. +......+|+++++ +..+.+.+.+|+++|||||++|+|+.....+. .++..+. .|
T Consensus 101 ~l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~-~~ 174 (207)
T cd03369 101 NLDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQ-KTIREEF-TN 174 (207)
T ss_pred HhcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHH-HHHHHhc-CC
Confidence 11 11111 23456788888877 44556678999999999999999998887774 4444454 48
Q ss_pred cEEEEeccChhhhhCccc
Q 001570 864 CLGIVSTHLHGIFSLPLK 881 (1051)
Q Consensus 864 ~~vi~~TH~~el~~l~~~ 881 (1051)
.++|++||+.+++..+++
T Consensus 175 ~tiii~th~~~~~~~~d~ 192 (207)
T cd03369 175 STILTIAHRLRTIIDYDK 192 (207)
T ss_pred CEEEEEeCCHHHHhhCCE
Confidence 999999999988754433
No 260
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=4.2e-17 Score=173.18 Aligned_cols=151 Identities=14% Similarity=0.115 Sum_probs=114.3
Q ss_pred eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh----hcceeecCCCCC-----h--------------hh--
Q 001570 743 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----ICGLMVPAESAS-----I--------------PY-- 793 (1051)
Q Consensus 743 ~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la----~~G~~vpa~~~~-----i--------------~~-- 793 (1051)
.+..|+|| |++++++||||+||||+||++.|++... ..++++|..... + |.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 47789999 8999999999999999999999998543 223344543110 0 00
Q ss_pred -------------------HHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 001570 794 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAG 853 (1051)
Q Consensus 794 -------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~~l~~ 853 (1051)
.+.+.+-++++..+.....++|.|++..+.+ ++..++|.+++|||||-|||...+..+..
T Consensus 118 s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~ 197 (325)
T COG4586 118 SLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIRE 197 (325)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHH
Confidence 1223334456666777778889888876665 55689999999999999999999999988
Q ss_pred HHHHHHHcCCcEEEEeccCh-hhhhCcccccccccceeEEE
Q 001570 854 SIIETLDNIGCLGIVSTHLH-GIFSLPLKIKNAAYKAMGTE 893 (1051)
Q Consensus 854 ~ile~L~~~g~~vi~~TH~~-el~~l~~~~~~i~~~~~~~~ 893 (1051)
.+.++-.++++||+.+||++ +++.++++.-.+..+.+.++
T Consensus 198 Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~d 238 (325)
T COG4586 198 FLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFD 238 (325)
T ss_pred HHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeec
Confidence 88888888999999999997 46677776666666666543
No 261
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.3e-16 Score=173.10 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=100.3
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--h-----h--------------------hcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L-----G--------------------ICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--l-----a--------------------~~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+++|+|+.. . + +...++|+...
T Consensus 17 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 96 (252)
T PRK14239 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96 (252)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence 4578999998 89999999999999999999999731 1 0 11235666543
Q ss_pred Ch--hhHHHH----------------------HHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 790 SI--PYFDAI----------------------MLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i--~~~d~i----------------------~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.+ ...+++ +..++.. +........+|+|+++... +.+.+.+|+++||||||
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 176 (252)
T PRK14239 97 PFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT 176 (252)
T ss_pred cCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 22 122221 1222221 1234456778999888554 45668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCcccccccccce
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 889 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~ 889 (1051)
+|||+.....+. .+++.+.+ +.|+|++||+++.+ ..+++...+.++.
T Consensus 177 ~~LD~~~~~~l~-~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~ 224 (252)
T PRK14239 177 SALDPISAGKIE-ETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGD 224 (252)
T ss_pred cccCHHHHHHHH-HHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCE
Confidence 999998888884 55555554 68999999999765 4555444443433
No 262
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.4e-16 Score=172.84 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=100.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------------hhcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------GICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------------a~~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... .+...|+|++..
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14240 15 DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94 (250)
T ss_pred CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence 3578999998 899999999999999999999996421 011236666543
Q ss_pred Chh--hHHHH----------------------HHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 790 SIP--YFDAI----------------------MLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~d~i----------------------~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.++ ..+++ +..++.. +.......++|+|++|... +.+.+.+|+++||||||
T Consensus 95 ~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 174 (250)
T PRK14240 95 PFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 221 11221 1122221 1223456789999888544 56678999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCcccccccccce
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKA 889 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~ 889 (1051)
+|||+.....+. .++..+.+ +.|+|++||+.+.+ +.+++...+.++.
T Consensus 175 ~~LD~~~~~~l~-~~l~~~~~-~~tiii~sH~~~~~~~~~d~v~~l~~G~ 222 (250)
T PRK14240 175 SALDPISTLKIE-ELIQELKK-DYTIVIVTHNMQQASRISDKTAFFLNGE 222 (250)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCeEEEEEeCHHHHHhhCCEEEEEECCE
Confidence 999998888884 45555554 78999999999865 4454443333333
No 263
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.68 E-value=9.7e-17 Score=212.81 Aligned_cols=151 Identities=16% Similarity=0.151 Sum_probs=116.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------------------hhcceeecCCCCChhh----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIPY---- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------------------a~~G~~vpa~~~~i~~---- 793 (1051)
++.++++++| |++++|+||||||||||||+|+|+... .+...++|++...++.
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHH
Confidence 4679999999 899999999999999999999999621 1122367776432211
Q ss_pred --------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHH
Q 001570 794 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIA 852 (1051)
Q Consensus 794 --------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~ 852 (1051)
+++++..+++.+...+..+++|+||+|... +++.+.+|+++||||||+|+|+..+..+
T Consensus 1022 E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l- 1100 (2272)
T TIGR01257 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI- 1100 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH-
Confidence 234566778877777888999999998544 5677999999999999999999888888
Q ss_pred HHHHHHHHcCCcEEEEeccChhhhh-CcccccccccceeEEE
Q 001570 853 GSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTE 893 (1051)
Q Consensus 853 ~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~~~~ 893 (1051)
+.+++.++ .|.+||++||++++++ ++++...+.++.+...
T Consensus 1101 ~~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~ 1141 (2272)
T TIGR01257 1101 WDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCS 1141 (2272)
T ss_pred HHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 66666665 4899999999999886 5665555556655443
No 264
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.7e-16 Score=174.17 Aligned_cols=148 Identities=18% Similarity=0.186 Sum_probs=101.8
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------h--------------------hcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------G--------------------ICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------a--------------------~~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... + +...|+|+...
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 4578999998 899999999999999999999997421 0 11235565543
Q ss_pred Chh--hHH----------------------HHHHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 790 SIP--YFD----------------------AIMLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~d----------------------~i~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.++ ..+ .++..++.. +........+|+|+++... +.+.+.+|+++||||||
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 175 (251)
T PRK14270 96 PFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPT 175 (251)
T ss_pred cCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 221 111 122333332 2234556789999888554 46668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
+|||+.....+.. ++..+.+ +.++|++||+.+.+. .+++...+.++.+
T Consensus 176 ~~LD~~~~~~l~~-~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i 224 (251)
T PRK14270 176 SALDPISTLKIED-LMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDL 224 (251)
T ss_pred ccCCHHHHHHHHH-HHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeE
Confidence 9999988888844 5555555 589999999998754 4554444444443
No 265
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.1e-16 Score=174.23 Aligned_cols=144 Identities=17% Similarity=0.217 Sum_probs=101.6
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh--------------------------hcceeecCCCC
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------------ICGLMVPAESA 789 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la--------------------------~~G~~vpa~~~ 789 (1051)
+++.++++++| |++++|+||||||||||+++|+|+.... +...|+|++..
T Consensus 21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc
Confidence 45679999999 8999999999999999999999986311 11235665543
Q ss_pred Chh---hHH----------------------HHHHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCC
Q 001570 790 SIP---YFD----------------------AIMLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEI 839 (1051)
Q Consensus 790 ~i~---~~d----------------------~i~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp 839 (1051)
.++ ..+ .++..+++. +........+|+|+++... +.+.+.+|+++|||||
T Consensus 101 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEP 180 (257)
T PRK14246 101 PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEP 180 (257)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 221 111 122334543 2234556778988888544 5667999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCccccccc
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNA 885 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i 885 (1051)
|+|||+.....+ ..++..+.+ ++|+|++||+.+.+ ..+++...+
T Consensus 181 t~~LD~~~~~~l-~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l 225 (257)
T PRK14246 181 TSMIDIVNSQAI-EKLITELKN-EIAIVIVSHNPQQVARVADYVAFL 225 (257)
T ss_pred CccCCHHHHHHH-HHHHHHHhc-CcEEEEEECCHHHHHHhCCEEEEE
Confidence 999999888777 555555654 68999999999877 455543333
No 266
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.68 E-value=1.9e-16 Score=170.83 Aligned_cols=130 Identities=19% Similarity=0.148 Sum_probs=95.6
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhh---------------hcceeecCCCCC-----hhh-----------------
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMVPAESAS-----IPY----------------- 793 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la---------------~~G~~vpa~~~~-----i~~----------------- 793 (1051)
|++++|+||||||||||+|+|+|+.... +...|+|++... ...
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~ 85 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRR 85 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccC
Confidence 7899999999999999999999986211 113466665321 001
Q ss_pred --------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCc
Q 001570 794 --------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC 864 (1051)
Q Consensus 794 --------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~ 864 (1051)
+..++..+++.+........+|+|+++... +.+.+.+|+++||||||+|+|+.....+... ++.+.+.|.
T Consensus 86 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~-l~~~~~~~~ 164 (223)
T TIGR03771 86 PCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTEL-FIELAGAGT 164 (223)
T ss_pred CcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHcCC
Confidence 123445566666666677889999988554 4667999999999999999999888888554 455666689
Q ss_pred EEEEeccChhhhh-Cccc
Q 001570 865 LGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 865 ~vi~~TH~~el~~-l~~~ 881 (1051)
|+|++||+++.+. .+++
T Consensus 165 tvii~sH~~~~~~~~~d~ 182 (223)
T TIGR03771 165 AILMTTHDLAQAMATCDR 182 (223)
T ss_pred EEEEEeCCHHHHHHhCCE
Confidence 9999999998653 4543
No 267
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.68 E-value=1.8e-16 Score=159.39 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=82.5
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHH
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVE 817 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e 817 (1051)
..++++++| |++++|+||||||||||+++|+|+.... .|...-.....+.++ ..+|.+
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~~~~~i~~~-----------------~~lS~G 74 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGSTVKIGYF-----------------EQLSGG 74 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCeEEEEEE-----------------ccCCHH
Confidence 468899988 8999999999999999999999986432 222111111111111 118888
Q ss_pred HHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh
Q 001570 818 MSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 818 ~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
+++.. .+.+.+.+|+++|||||++|+|+.....+.. +++.+ +.++|++||+.+.+.
T Consensus 75 ~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~-~l~~~---~~til~~th~~~~~~ 131 (144)
T cd03221 75 EKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE-ALKEY---PGTVILVSHDRYFLD 131 (144)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHc---CCEEEEEECCHHHHH
Confidence 87744 4566799999999999999999988777743 44433 579999999998764
No 268
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.2e-16 Score=175.13 Aligned_cols=138 Identities=19% Similarity=0.191 Sum_probs=97.7
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----h-----------------------hcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----G-----------------------ICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----a-----------------------~~G~~vpa~~~ 789 (1051)
+..++++++| |++++|+||||||||||+++|+|+... . +...|+|++..
T Consensus 25 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 104 (269)
T PRK14259 25 TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104 (269)
T ss_pred CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence 4579999999 899999999999999999999998421 0 11236666543
Q ss_pred Chh--hHH--------------------HHHHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCC
Q 001570 790 SIP--YFD--------------------AIMLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRG 842 (1051)
Q Consensus 790 ~i~--~~d--------------------~i~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~G 842 (1051)
.++ ..+ .++..++.. +........+|+|++|... +.+.+.+|+++||||||+|
T Consensus 105 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~g 184 (269)
T PRK14259 105 PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSA 184 (269)
T ss_pred cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 221 111 122333321 2234455779999888544 5667899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccc
Q 001570 843 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 880 (1051)
Q Consensus 843 lD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~ 880 (1051)
||+.....+ ..+++.+++ +.++|++||+.+++. +++
T Consensus 185 LD~~~~~~l-~~~l~~~~~-~~tiiivtH~~~~~~~~~d 221 (269)
T PRK14259 185 LDPISTLKI-EETMHELKK-NFTIVIVTHNMQQAVRVSD 221 (269)
T ss_pred CCHHHHHHH-HHHHHHHhc-CCEEEEEeCCHHHHHHhcC
Confidence 999888887 455555654 689999999998764 443
No 269
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=4.3e-16 Score=165.53 Aligned_cols=145 Identities=15% Similarity=0.162 Sum_probs=96.6
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--hhc--------------------ceeecCCCCChh--
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--GIC--------------------GLMVPAESASIP-- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--a~~--------------------G~~vpa~~~~i~-- 792 (1051)
+..++++++| |++++|+||||||||||+++|+|+... ... -.++|++...++
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 98 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCC
Confidence 5679999998 899999999999999999999998641 111 125555433322
Q ss_pred -hHHHHHHhcCCCCCccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCcEEEEe
Q 001570 793 -YFDAIMLHMKSYDSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVS 869 (1051)
Q Consensus 793 -~~d~i~~~~~~~d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~-~g~~vi~~ 869 (1051)
..+.+...... ........+|+|+++. ..+.+.+.+|+++||||||+|+|+.....+. .+++.+.+ .+.++|++
T Consensus 99 tv~~~l~~~~~~--~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~~t~ii~ 175 (202)
T cd03233 99 TVRETLDFALRC--KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEIL-KCIRTMADVLKTTTFVS 175 (202)
T ss_pred cHHHHHhhhhhh--ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEE
Confidence 23333221111 1445567889888875 4556779999999999999999998888884 45555554 36666665
Q ss_pred -ccChh-hhhCcccccccccc
Q 001570 870 -THLHG-IFSLPLKIKNAAYK 888 (1051)
Q Consensus 870 -TH~~e-l~~l~~~~~~i~~~ 888 (1051)
+|+.+ +.+.+++...+.++
T Consensus 176 ~~h~~~~~~~~~d~i~~l~~G 196 (202)
T cd03233 176 LYQASDEIYDLFDKVLVLYEG 196 (202)
T ss_pred EcCCHHHHHHhCCeEEEEECC
Confidence 55544 44555544443333
No 270
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3.5e-16 Score=171.74 Aligned_cols=148 Identities=18% Similarity=0.199 Sum_probs=100.7
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--h-----h--------------------hcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L-----G--------------------ICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--l-----a--------------------~~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+|+|+|+.. . + +...|+|++..
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (252)
T PRK14255 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence 4578999998 89999999999999999999999742 1 0 11235666543
Q ss_pred Chh--hHHHH----------------------HHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 790 SIP--YFDAI----------------------MLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~d~i----------------------~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.++ ..+.+ +..++.. +........+|+|+++... +.+.+.+|+++||||||
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 176 (252)
T PRK14255 97 PFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT 176 (252)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 221 11111 1222221 2234455788999888554 46668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
+|||+.....+ ..+++.+.+ +.|+|++||+.+.+. .+++...+.++.+
T Consensus 177 ~~LD~~~~~~l-~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14255 177 SALDPISSTQI-ENMLLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNL 225 (252)
T ss_pred ccCCHHHHHHH-HHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 99999888888 444555554 589999999998764 4554444434333
No 271
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.8e-16 Score=174.16 Aligned_cols=139 Identities=17% Similarity=0.157 Sum_probs=103.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------------hhcceeecCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------------GICGLMVPAE 787 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------------a~~G~~vpa~ 787 (1051)
...+++|+|| |++++|+|.+||||||+.++|+|++.- ++..+++||+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 3578999999 899999999999999999999998721 1122367776
Q ss_pred CCC--hhh--------------------------HHHHHHhcCCCCC---ccCCccchhHHHHHHHH-HHHHcCCCcEEE
Q 001570 788 SAS--IPY--------------------------FDAIMLHMKSYDS---PADGKSSFQVEMSEIRS-IVTATTSRSLVL 835 (1051)
Q Consensus 788 ~~~--i~~--------------------------~d~i~~~~~~~d~---~~~~~stfs~e~~~~~~-il~~a~~~sLlL 835 (1051)
+.. -|. .-+++..+|+.+. +......||+||+|... +++.+.+|+|||
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlI 176 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLI 176 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEE
Confidence 421 010 1224455566543 34566789999999555 477899999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHH-cCCcEEEEeccChhhhh-Ccc
Q 001570 836 IDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPL 880 (1051)
Q Consensus 836 LDEp~~GlD~~~~~~l~~~ile~L~-~~g~~vi~~TH~~el~~-l~~ 880 (1051)
.||||++||...+..|. .+++.++ +.|.++||+|||+.++. +++
T Consensus 177 ADEPTTALDvt~QaqIl-~Ll~~l~~e~~~aiilITHDl~vva~~aD 222 (316)
T COG0444 177 ADEPTTALDVTVQAQIL-DLLKELQREKGTALILITHDLGVVAEIAD 222 (316)
T ss_pred eCCCcchhhHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcc
Confidence 99999999999999994 5555555 58999999999999764 444
No 272
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.67 E-value=2e-16 Score=190.08 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=100.3
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh----------------------hcceeecCCCCCh---
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------ICGLMVPAESASI--- 791 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la----------------------~~G~~vpa~~~~i--- 791 (1051)
+..+++++|| |++++|+||||||||||+|+|+|+.... ....++|++....
T Consensus 272 ~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 351 (490)
T PRK10938 272 DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRV 351 (490)
T ss_pred CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhccc
Confidence 4568999999 8999999999999999999999974310 0122445431100
Q ss_pred ---------------------------hhHHHHHHhcCCCC-CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCC
Q 001570 792 ---------------------------PYFDAIMLHMKSYD-SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRG 842 (1051)
Q Consensus 792 ---------------------------~~~d~i~~~~~~~d-~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~G 842 (1051)
..+..++..+++.+ ......+++|+|++|... +.+.+.+|+++||||||+|
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~g 431 (490)
T PRK10938 352 STSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQG 431 (490)
T ss_pred CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 01234555667765 566777899999998555 4666899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCC-cEEEEeccChhhhh
Q 001570 843 TETAKGTCIAGSIIETLDNIG-CLGIVSTHLHGIFS 877 (1051)
Q Consensus 843 lD~~~~~~l~~~ile~L~~~g-~~vi~~TH~~el~~ 877 (1051)
||+.....+ ..++..+++.+ .++|++||+.+++.
T Consensus 432 LD~~~~~~l-~~~L~~l~~~~~~tviivsHd~~~~~ 466 (490)
T PRK10938 432 LDPLNRQLV-RRFVDVLISEGETQLLFVSHHAEDAP 466 (490)
T ss_pred CCHHHHHHH-HHHHHHHHhcCCcEEEEEecchhhhh
Confidence 999888888 45555555554 57999999998875
No 273
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.67 E-value=2.6e-16 Score=189.52 Aligned_cols=138 Identities=13% Similarity=0.117 Sum_probs=103.0
Q ss_pred eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCC---Chh--
Q 001570 743 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESA---SIP-- 792 (1051)
Q Consensus 743 ~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~---~i~-- 792 (1051)
.++++++| |++++|+||||||||||+|+|+|+... .+.-.|+|++.. .++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 345 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM 345 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC
Confidence 36888888 899999999999999999999998611 011346777631 100
Q ss_pred ----------------------------hHHHHHHhcCCC-CCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCC
Q 001570 793 ----------------------------YFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRG 842 (1051)
Q Consensus 793 ----------------------------~~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~G 842 (1051)
.++.++..+++. +...+...++|+|++|...+ .+.+.+|+++||||||+|
T Consensus 346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~ 425 (501)
T PRK10762 346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG 425 (501)
T ss_pred cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 022355566774 45677788999999985554 566899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccc
Q 001570 843 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 843 lD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~ 881 (1051)
||+.....+ ..+++.+.+.|.++|++||+++++. ++++
T Consensus 426 LD~~~~~~l-~~~l~~~~~~g~tviivtHd~~~~~~~~d~ 464 (501)
T PRK10762 426 VDVGAKKEI-YQLINQFKAEGLSIILVSSEMPEVLGMSDR 464 (501)
T ss_pred CCHhHHHHH-HHHHHHHHHCCCEEEEEcCCHHHHHhhCCE
Confidence 999888888 5555556666999999999998764 4443
No 274
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.2e-16 Score=174.37 Aligned_cols=139 Identities=19% Similarity=0.229 Sum_probs=97.7
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------h--------------------hcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------G--------------------ICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------a--------------------~~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... + ....|+|++..
T Consensus 32 ~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~ 111 (274)
T PRK14265 32 GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111 (274)
T ss_pred CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc
Confidence 4579999999 899999999999999999999997521 0 11236666543
Q ss_pred Chh--hHHHH--------------------HHhcCCC----CCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCC
Q 001570 790 SIP--YFDAI--------------------MLHMKSY----DSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRG 842 (1051)
Q Consensus 790 ~i~--~~d~i--------------------~~~~~~~----d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~G 842 (1051)
.++ ..+++ +..++.. +........+|+|+++.. .+.+.+.+|+++||||||+|
T Consensus 112 l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~ 191 (274)
T PRK14265 112 PFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSA 191 (274)
T ss_pred cccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence 221 11221 2222321 223455678899888854 45667999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccc
Q 001570 843 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 843 lD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~ 881 (1051)
||+.....+.. ++..+.+ +.++|++||+.+.+. ++++
T Consensus 192 LD~~~~~~l~~-~L~~~~~-~~tiii~sH~~~~~~~~~d~ 229 (274)
T PRK14265 192 LDPISTRQVEE-LCLELKE-QYTIIMVTHNMQQASRVADW 229 (274)
T ss_pred CCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 99988888854 4445554 689999999998764 4443
No 275
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.67 E-value=2.7e-16 Score=168.54 Aligned_cols=136 Identities=18% Similarity=0.142 Sum_probs=93.8
Q ss_pred eeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhccee-------ec--CCCCCh---hhHHHH----------
Q 001570 744 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLM-------VP--AESASI---PYFDAI---------- 797 (1051)
Q Consensus 744 vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~-------vp--a~~~~i---~~~d~i---------- 797 (1051)
++++++| |++++|+||||||||||+|+|+|+.... .|.. ++ +....+ ...+.+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~-sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD-EGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLD 80 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC-CCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCC
Confidence 6888888 8999999999999999999999986322 1211 11 111111 111111
Q ss_pred --------HHhcCCCCCccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEE
Q 001570 798 --------MLHMKSYDSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIV 868 (1051)
Q Consensus 798 --------~~~~~~~d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~ 868 (1051)
...+++.+......+.+|++|++. ..+++.+.+|+++|||||++++|+.....+...+.+.+++ .++|+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~--~~ii~ 158 (213)
T PRK15177 81 GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQ--KGLIV 158 (213)
T ss_pred HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhC--CcEEE
Confidence 112233333445567889999885 4556778999999999999999999888886666666543 57899
Q ss_pred eccChhhhh-Ccccc
Q 001570 869 STHLHGIFS-LPLKI 882 (1051)
Q Consensus 869 ~TH~~el~~-l~~~~ 882 (1051)
+||+++.+. ++++.
T Consensus 159 vsH~~~~~~~~~d~i 173 (213)
T PRK15177 159 LTHNPRLIKEHCHAF 173 (213)
T ss_pred EECCHHHHHHhcCee
Confidence 999998764 55543
No 276
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.4e-16 Score=194.19 Aligned_cols=147 Identities=12% Similarity=0.098 Sum_probs=107.1
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------hhcceeecCCC--CChh
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------GICGLMVPAES--ASIP 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------a~~G~~vpa~~--~~i~ 792 (1051)
..+++++|| |++++|+||||||||||+|+|+|+... .....||||+. ...+
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~ 416 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDP 416 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCC
Confidence 468999999 899999999999999999999998610 01134777764 1111
Q ss_pred ---h----------------------HHHHHHhcCCC-CCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCH
Q 001570 793 ---Y----------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTET 845 (1051)
Q Consensus 793 ---~----------------------~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~ 845 (1051)
. +..++..+++. +...+....+|+||+|...+ .+.+.+|+||||||||+|||+
T Consensus 417 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~ 496 (623)
T PRK10261 417 RQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV 496 (623)
T ss_pred CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 1 12345556764 34567778999999985554 666899999999999999999
Q ss_pred HHHHHHHHHHHHHHHc-CCcEEEEeccChhhhh-Ccccccccccce
Q 001570 846 AKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 846 ~~~~~l~~~ile~L~~-~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
.....+. .++..+++ .|.++||+|||++++. ++++...+..+.
T Consensus 497 ~~~~~i~-~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 497 SIRGQII-NLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred HHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9988884 44445544 5899999999998865 444433333333
No 277
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.67 E-value=4.4e-16 Score=171.59 Aligned_cols=139 Identities=13% Similarity=0.069 Sum_probs=96.2
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCChhh----
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIPY---- 793 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i~~---- 793 (1051)
..++++++| |++++|+||||||||||+|+|+|+... .....++|+....++.
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~ 113 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRF 113 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHH
Confidence 569999999 899999999999999999999998521 1122466665432210
Q ss_pred ------------HHHHHHhcC-----------CCCCccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 794 ------------FDAIMLHMK-----------SYDSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 794 ------------~d~i~~~~~-----------~~d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
+...+...+ ...........+|+|++|. ..+.+.+.+|+++||||||+|+|+....
T Consensus 114 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~ 193 (257)
T cd03288 114 NLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193 (257)
T ss_pred hcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 111111111 2222223345788888874 4456679999999999999999998777
Q ss_pred HHHHHHHHHHHcCCcEEEEeccChhhhhCcccc
Q 001570 850 CIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 882 (1051)
Q Consensus 850 ~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~ 882 (1051)
.+ ..++..+. .+.|+|++||+++.+..+++.
T Consensus 194 ~l-~~~l~~~~-~~~tiii~sh~~~~~~~~dri 224 (257)
T cd03288 194 IL-QKVVMTAF-ADRTVVTIAHRVSTILDADLV 224 (257)
T ss_pred HH-HHHHHHhc-CCCEEEEEecChHHHHhCCEE
Confidence 66 45555554 489999999999987654433
No 278
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.67 E-value=3.4e-16 Score=189.77 Aligned_cols=148 Identities=18% Similarity=0.111 Sum_probs=107.4
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------h----------------------hcceeecCCC
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------G----------------------ICGLMVPAES 788 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------a----------------------~~G~~vpa~~ 788 (1051)
+.++++++| |++++|+||||||||||+|+|+|++.. + +.-.++||+.
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 579999999 899999999999999999999998642 0 1124667663
Q ss_pred C--Chhh-------------------------HHHHHHhcCCCC---CccCCccchhHHHHHHHHH-HHHcCCCcEEEEc
Q 001570 789 A--SIPY-------------------------FDAIMLHMKSYD---SPADGKSSFQVEMSEIRSI-VTATTSRSLVLID 837 (1051)
Q Consensus 789 ~--~i~~-------------------------~d~i~~~~~~~d---~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLD 837 (1051)
. ..+. ++.++..+++.+ ...+..+++|+|++|...+ .+.+.+|+++|||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllD 181 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIAD 181 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 2 1100 123445556654 2356778999999985554 6668999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCcEEEEeccChhhhh-Cccccccccccee
Q 001570 838 EICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 838 Ep~~GlD~~~~~~l~~~ile~L~~-~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
|||+|||+.....+ ..+++.+++ .|.|+|++||+++.+. .+++...+.++++
T Consensus 182 EPt~~LD~~~~~~l-~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 182 EPTTALDVSVQAQI-LQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235 (529)
T ss_pred CCCCccCHHHHHHH-HHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE
Confidence 99999999888888 455555654 4899999999998764 5555444444444
No 279
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=5.3e-16 Score=170.08 Aligned_cols=146 Identities=17% Similarity=0.197 Sum_probs=99.7
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh--------------------------hcceeecCCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------------ICGLMVPAESAS 790 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la--------------------------~~G~~vpa~~~~ 790 (1051)
++.++++++| |++++|+||||||||||+|+|+|+.... +...|+|++...
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 94 (249)
T PRK14253 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94 (249)
T ss_pred CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc
Confidence 4679999998 8999999999999999999999985320 112356665432
Q ss_pred hh--hHHHH----------------------HHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCC
Q 001570 791 IP--YFDAI----------------------MLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICR 841 (1051)
Q Consensus 791 i~--~~d~i----------------------~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~ 841 (1051)
++ ..+.+ +..++.. +........+|+|+++... +.+.+.+|+++||||||+
T Consensus 95 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 174 (249)
T PRK14253 95 FPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTS 174 (249)
T ss_pred CcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 21 11111 1122221 1223455678888888554 466689999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccc
Q 001570 842 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYK 888 (1051)
Q Consensus 842 GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~ 888 (1051)
|+|+.....+ ..+++.+.+ +.|+|++||+.+++. .+++...+..+
T Consensus 175 ~LD~~~~~~l-~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G 220 (249)
T PRK14253 175 ALDPIATHKI-EELMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMG 220 (249)
T ss_pred cCCHHHHHHH-HHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999877777 556666665 589999999998754 45443333333
No 280
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.9e-16 Score=193.48 Aligned_cols=148 Identities=13% Similarity=0.094 Sum_probs=108.5
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------h---------------------------hccee
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------G---------------------------ICGLM 783 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------a---------------------------~~G~~ 783 (1051)
..+++++|| |++++|+||||||||||+|+|+|++.. . +.-.+
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~ 108 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAM 108 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEE
Confidence 479999999 899999999999999999999998621 0 01236
Q ss_pred ecCCC--CChh---h----------------------HHHHHHhcCCCC---CccCCccchhHHHHHHHH-HHHHcCCCc
Q 001570 784 VPAES--ASIP---Y----------------------FDAIMLHMKSYD---SPADGKSSFQVEMSEIRS-IVTATTSRS 832 (1051)
Q Consensus 784 vpa~~--~~i~---~----------------------~d~i~~~~~~~d---~~~~~~stfs~e~~~~~~-il~~a~~~s 832 (1051)
|+|+. ...+ . +.+++..+|+.+ .......++|+||+|... +.+.+.+|+
T Consensus 109 v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~ 188 (623)
T PRK10261 109 IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPA 188 (623)
T ss_pred EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCC
Confidence 66653 1111 1 123455667643 356678899999998555 466799999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCcEEEEeccChhhh-hCccccccccccee
Q 001570 833 LVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 833 LlLLDEp~~GlD~~~~~~l~~~ile~L~~-~g~~vi~~TH~~el~-~l~~~~~~i~~~~~ 890 (1051)
||||||||+|||+.....+ ..+++.+.+ .|.++|++||+++++ .++++...+.++.+
T Consensus 189 lLllDEPt~~LD~~~~~~l-~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i 247 (623)
T PRK10261 189 VLIADEPTTALDVTIQAQI-LQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 247 (623)
T ss_pred EEEEeCCCCccCHHHHHHH-HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCee
Confidence 9999999999999888888 556666654 589999999999876 45665544444444
No 281
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.67 E-value=4.7e-16 Score=188.28 Aligned_cols=140 Identities=13% Similarity=0.109 Sum_probs=102.6
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH-------h--h------------------hcceeecCCCCC
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-------L--G------------------ICGLMVPAESAS 790 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~-------l--a------------------~~G~~vpa~~~~ 790 (1051)
..+++++|| |++++|+||||||||||+|+|+|+.. + . +.-.|+|++...
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l 376 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDL 376 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCccc
Confidence 579999999 89999999999999999999999861 1 1 012366765422
Q ss_pred hh---h--------------------HHHHHHhcCCCC-----CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCC
Q 001570 791 IP---Y--------------------FDAIMLHMKSYD-----SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICR 841 (1051)
Q Consensus 791 i~---~--------------------~d~i~~~~~~~d-----~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~ 841 (1051)
++ . +..++..+++.+ ...+...++|+||+|... +.+.+.+|+++||||||+
T Consensus 377 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~ 456 (520)
T TIGR03269 377 YPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTG 456 (520)
T ss_pred CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 11 1 122445566653 346677899999998555 466689999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccc
Q 001570 842 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 842 GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~ 881 (1051)
|||+.....+...+.+...+.|.++|++||+++++. ++++
T Consensus 457 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~ 497 (520)
T TIGR03269 457 TMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDR 497 (520)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCE
Confidence 999988888854444433445899999999998765 4443
No 282
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=4.8e-16 Score=170.68 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=101.4
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------------------------hcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------------ICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------------------------~~G~~vpa~~~ 789 (1051)
++.+++++|| |++++|+||||+|||||+|+|+|+.... +...|+|++..
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 4679999998 8999999999999999999999985211 01235566543
Q ss_pred Chh---hHHHHH----------------------HhcCCC----CCccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCC
Q 001570 790 SIP---YFDAIM----------------------LHMKSY----DSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEI 839 (1051)
Q Consensus 790 ~i~---~~d~i~----------------------~~~~~~----d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp 839 (1051)
.++ ..+.+. ..++.. +......+.+|+|+++. +.+.+.+.+|+++|||||
T Consensus 96 ~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (252)
T PRK14272 96 PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEP 175 (252)
T ss_pred cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 222 122221 112211 12244567889988874 445667999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
++|+|+.....+ ..+++.+++ +.|+|++||+.+++. .+++...+..+.+
T Consensus 176 ~~~LD~~~~~~l-~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14272 176 TSALDPASTARI-EDLMTDLKK-VTTIIIVTHNMHQAARVSDTTSFFLVGDL 225 (252)
T ss_pred CccCCHHHHHHH-HHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999887777 445555664 689999999998765 4554444444443
No 283
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.67 E-value=2.4e-16 Score=191.07 Aligned_cols=149 Identities=14% Similarity=0.095 Sum_probs=107.0
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH------h----------------hhcceeecCCCC--Chh
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL------L----------------GICGLMVPAESA--SIP 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~------l----------------a~~G~~vpa~~~--~i~ 792 (1051)
++.+++++|| |++++|+||||||||||+|+|+|+.. + .+.-.|+|+... .++
T Consensus 298 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~ 377 (529)
T PRK15134 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNP 377 (529)
T ss_pred cceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCC
Confidence 3579999999 89999999999999999999999851 0 111246676531 110
Q ss_pred ---h-----------------------HHHHHHhcCCC-CCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCC
Q 001570 793 ---Y-----------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTE 844 (1051)
Q Consensus 793 ---~-----------------------~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD 844 (1051)
. +..++..+++. +...+...++|+||+|...+ .+.+.+|+++||||||+|||
T Consensus 378 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 457 (529)
T PRK15134 378 RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457 (529)
T ss_pred cccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccC
Confidence 1 12345556665 34566778999999985554 66689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCcEEEEeccChhhhh-Cccccccccccee
Q 001570 845 TAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 845 ~~~~~~l~~~ile~L~~-~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
+.....+. .++..+.+ .|.++|++||+.+++. .+++...+.++.+
T Consensus 458 ~~~~~~l~-~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i 504 (529)
T PRK15134 458 KTVQAQIL-ALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEV 504 (529)
T ss_pred HHHHHHHH-HHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 99888885 44555554 5899999999998764 4554444444433
No 284
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.67 E-value=4.2e-16 Score=173.73 Aligned_cols=139 Identities=17% Similarity=0.096 Sum_probs=96.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhh-------cceeecCCCCChh--hHHH-----------
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------CGLMVPAESASIP--YFDA----------- 796 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~-------~G~~vpa~~~~i~--~~d~----------- 796 (1051)
++.++++++| |++++|+||||||||||+++|+|++.... .-.|+|+....++ ..+.
T Consensus 49 ~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~ 128 (282)
T cd03291 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYR 128 (282)
T ss_pred cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHH
Confidence 3569999998 89999999999999999999999863221 1236676643211 1111
Q ss_pred ---HHHhcCCCC-----------CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHc
Q 001570 797 ---IMLHMKSYD-----------SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN 861 (1051)
Q Consensus 797 ---i~~~~~~~d-----------~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~ 861 (1051)
.+..+++.+ ........+|+|+++... +.+.+.+|+++||||||+|||+.....+...+++.+.+
T Consensus 129 ~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~ 208 (282)
T cd03291 129 YKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMA 208 (282)
T ss_pred HHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhC
Confidence 111122211 111223578888887544 46668999999999999999998877776666666654
Q ss_pred CCcEEEEeccChhhhhCcc
Q 001570 862 IGCLGIVSTHLHGIFSLPL 880 (1051)
Q Consensus 862 ~g~~vi~~TH~~el~~l~~ 880 (1051)
+.++|++||+.+....++
T Consensus 209 -~~tIiiisH~~~~~~~~d 226 (282)
T cd03291 209 -NKTRILVTSKMEHLKKAD 226 (282)
T ss_pred -CCEEEEEeCChHHHHhCC
Confidence 789999999998876543
No 285
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.1e-16 Score=188.49 Aligned_cols=140 Identities=13% Similarity=0.079 Sum_probs=103.0
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCC---C---
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESA---S--- 790 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~---~--- 790 (1051)
+.++++++| |++++|+||||||||||+|+|+|+... .+...|+|+... .
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 340 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY 340 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence 358999998 899999999999999999999998621 011235565421 0
Q ss_pred hhh---------------------------HHHHHHhcCCC-CCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCC
Q 001570 791 IPY---------------------------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICR 841 (1051)
Q Consensus 791 i~~---------------------------~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~ 841 (1051)
... +..++..+++. +.......++|+|++|...+ ...+.+|+++||||||+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~ 420 (491)
T PRK10982 341 LDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTR 420 (491)
T ss_pred CcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 000 12234455553 34677788999999985554 56689999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccc
Q 001570 842 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 882 (1051)
Q Consensus 842 GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~ 882 (1051)
|+|+.....+ ..+++.+.+.|.|+|++|||.+++. ++++.
T Consensus 421 gLD~~~~~~~-~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v 461 (491)
T PRK10982 421 GIDVGAKFEI-YQLIAELAKKDKGIIIISSEMPELLGITDRI 461 (491)
T ss_pred ccChhHHHHH-HHHHHHHHHCCCEEEEECCChHHHHhhCCEE
Confidence 9999888888 5566667777999999999998764 44443
No 286
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=5.8e-16 Score=170.20 Aligned_cols=140 Identities=21% Similarity=0.235 Sum_probs=97.5
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------h--------------------hcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------G--------------------ICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------a--------------------~~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... + +...|+|++..
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 4679999998 899999999999999999999987421 0 11235555543
Q ss_pred Chh--hHH----------------------HHHHhcCCC----CCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCC
Q 001570 790 SIP--YFD----------------------AIMLHMKSY----DSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~d----------------------~i~~~~~~~----d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~ 840 (1051)
.++ ..+ +++..++.. +........+|+|+++.. .+.+.+.+|+++||||||
T Consensus 98 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 177 (253)
T PRK14261 98 PFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPC 177 (253)
T ss_pred cCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 221 111 122222332 123455667888888754 456668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccc
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 882 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~ 882 (1051)
+|+|+.....+ ..+++.+.+ +.++|++||+.+.+. .+++.
T Consensus 178 ~gLD~~~~~~l-~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v 218 (253)
T PRK14261 178 SALDPIATAKI-EDLIEDLKK-EYTVIIVTHNMQQAARVSDYT 218 (253)
T ss_pred ccCCHHHHHHH-HHHHHHHhh-CceEEEEEcCHHHHHhhCCEE
Confidence 99999888888 455555655 589999999998764 45543
No 287
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=5.8e-16 Score=169.98 Aligned_cols=147 Identities=17% Similarity=0.183 Sum_probs=100.7
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------------------------hcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------------------ICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------------------------~~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+++|+|+.... +...|+|+...
T Consensus 16 ~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (251)
T PRK14249 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN 95 (251)
T ss_pred CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc
Confidence 4568999998 8999999999999999999999986321 11235555543
Q ss_pred Chh--hHHH----------------------HHHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 790 SIP--YFDA----------------------IMLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~d~----------------------i~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.++ ..++ ++..++.. +........+|+|++|... +.+.+.+|+++||||||
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 175 (251)
T PRK14249 96 PFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175 (251)
T ss_pred cCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 221 1111 11222322 1234556778998888544 46668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
+|||+.....+. .++..+. .+.|+|++||+.+++. .+++...+.++.
T Consensus 176 ~~LD~~~~~~l~-~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~ 223 (251)
T PRK14249 176 SALDPVSTMRIE-ELMQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGD 223 (251)
T ss_pred ccCCHHHHHHHH-HHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCe
Confidence 999998888874 4555565 4799999999998765 344433333333
No 288
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=6.2e-16 Score=172.20 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=104.5
Q ss_pred CcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------------hhcce
Q 001570 733 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------------GICGL 782 (1051)
Q Consensus 733 ~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------------a~~G~ 782 (1051)
++.+.+. ++.++++++| |++++|+||||||||||+|+|+|+... .....
T Consensus 26 nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~ 104 (276)
T PRK14271 26 NLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVG 104 (276)
T ss_pred eEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheE
Confidence 3334443 5689999999 899999999999999999999998532 01123
Q ss_pred eecCCCCChh--hHH----------------------HHHHhcCCCC----CccCCccchhHHHHHHHH-HHHHcCCCcE
Q 001570 783 MVPAESASIP--YFD----------------------AIMLHMKSYD----SPADGKSSFQVEMSEIRS-IVTATTSRSL 833 (1051)
Q Consensus 783 ~vpa~~~~i~--~~d----------------------~i~~~~~~~d----~~~~~~stfs~e~~~~~~-il~~a~~~sL 833 (1051)
|+|++...++ ..+ .++..+++.. .+.....++|+|+++... +.+.+.+|++
T Consensus 105 ~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~l 184 (276)
T PRK14271 105 MLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEV 184 (276)
T ss_pred EeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 6666543221 111 1223344432 233456788998888544 4666899999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 834 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 834 lLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
+||||||+|+|+.....+ ..++..+.+ +.|+|++||+.+++. .+++...+..+.
T Consensus 185 llLDEPt~~LD~~~~~~l-~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~ 239 (276)
T PRK14271 185 LLLDEPTSALDPTTTEKI-EEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGR 239 (276)
T ss_pred EEEcCCcccCCHHHHHHH-HHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999888877 445555655 589999999998754 455443433333
No 289
>PRK13409 putative ATPase RIL; Provisional
Probab=99.66 E-value=3.1e-16 Score=191.09 Aligned_cols=136 Identities=13% Similarity=0.083 Sum_probs=102.7
Q ss_pred eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh-------hcceeecCCCCCh---h----------------
Q 001570 743 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESASI---P---------------- 792 (1051)
Q Consensus 743 ~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la-------~~G~~vpa~~~~i---~---------------- 792 (1051)
+.++++++ |++++|+||||||||||+|+|+|+.... ....|+|+..... .
T Consensus 353 ~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~ 432 (590)
T PRK13409 353 FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSY 432 (590)
T ss_pred EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHH
Confidence 45777776 8999999999999999999999986321 1123677653211 0
Q ss_pred hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEecc
Q 001570 793 YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 871 (1051)
Q Consensus 793 ~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH 871 (1051)
..+.++..+++.+...+..+++|+|++|... +.+.+.+|+++||||||+|||+.....+...+.+...+.|.++|++||
T Consensus 433 ~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsH 512 (590)
T PRK13409 433 YKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDH 512 (590)
T ss_pred HHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 1234566677777677888999999988554 466689999999999999999988888854444433445899999999
Q ss_pred ChhhhhC
Q 001570 872 LHGIFSL 878 (1051)
Q Consensus 872 ~~el~~l 878 (1051)
|.+++..
T Consensus 513 D~~~~~~ 519 (590)
T PRK13409 513 DIYMIDY 519 (590)
T ss_pred CHHHHHH
Confidence 9988753
No 290
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=4.1e-16 Score=158.88 Aligned_cols=129 Identities=20% Similarity=0.254 Sum_probs=87.8
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhcce-eecCCCCChhhHHHHHHhcCCCCCccCCccchhH
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGL-MVPAESASIPYFDAIMLHMKSYDSPADGKSSFQV 816 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~-~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~ 816 (1051)
+.+++++++ |++++|+||||+|||||+++|+|+.... .|. ++............+...++.- ..+|+
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~-~G~i~~~~~~~~~~~~~~~~~~i~~~-------~qlS~ 83 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILIDGKDIAKLPLEELRRRIGYV-------PQLSG 83 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEEcccCCHHHHHhceEEE-------eeCCH
Confidence 468888888 7999999999999999999999986432 232 2211110000011111111111 11788
Q ss_pred HHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCc
Q 001570 817 EMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 879 (1051)
Q Consensus 817 e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~ 879 (1051)
|+++... +.+.+.+|+++|||||++|+|+.....+...+. .+.+.+.++|++||++++....
T Consensus 84 G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~-~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 84 GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR-ELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH-HHHHCCCEEEEEeCCHHHHHHh
Confidence 8877544 466688999999999999999988888755444 4544578999999999887653
No 291
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=9.2e-16 Score=173.21 Aligned_cols=138 Identities=20% Similarity=0.204 Sum_probs=97.0
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------------hhcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------GICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------------a~~G~~vpa~~~ 789 (1051)
+..++++++| |++++|+|||||||||||++|+|+... .+...|+|+...
T Consensus 57 ~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 136 (305)
T PRK14264 57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN 136 (305)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCc
Confidence 4679999998 899999999999999999999998521 011236666543
Q ss_pred Chh--hHHHH----------------------------------HHhcCCC----CCccCCccchhHHHHHHHH-HHHHc
Q 001570 790 SIP--YFDAI----------------------------------MLHMKSY----DSPADGKSSFQVEMSEIRS-IVTAT 828 (1051)
Q Consensus 790 ~i~--~~d~i----------------------------------~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a 828 (1051)
.++ ..+.+ +..+++. +........+|+|+++... +.+.+
T Consensus 137 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~ 216 (305)
T PRK14264 137 PFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLA 216 (305)
T ss_pred cccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHh
Confidence 221 11111 1222221 1224456778999888544 46668
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccc
Q 001570 829 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPL 880 (1051)
Q Consensus 829 ~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~ 880 (1051)
.+|+++|||||++|||+.....+ ..++..+.+ +.++|++||+.+.+. +++
T Consensus 217 ~~p~lLLLDEPtsgLD~~~~~~l-~~~L~~~~~-~~tiiivtH~~~~i~~~~d 267 (305)
T PRK14264 217 VDPEVILMDEPASALDPIATSKI-EDLIEELAE-EYTVVVVTHNMQQAARISD 267 (305)
T ss_pred cCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhc-CCEEEEEEcCHHHHHHhcC
Confidence 99999999999999999888877 555555655 489999999998854 444
No 292
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.7e-16 Score=173.88 Aligned_cols=135 Identities=19% Similarity=0.229 Sum_probs=97.5
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------------hhcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------GICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------------a~~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+++|+|+... .+...|+|++..
T Consensus 51 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (285)
T PRK14254 51 DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN 130 (285)
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 4679999999 899999999999999999999998531 011235666532
Q ss_pred Chh--hHH--------------------HHHHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCC
Q 001570 790 SIP--YFD--------------------AIMLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRG 842 (1051)
Q Consensus 790 ~i~--~~d--------------------~i~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~G 842 (1051)
.++ ..+ .++..+++. +.+......+|+|++|... +.+.+.+|+++||||||+|
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~ 210 (285)
T PRK14254 131 PFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASA 210 (285)
T ss_pred cCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 221 111 223344442 2335566789999988544 4666899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh
Q 001570 843 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 843 lD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
||+.....+ ..+++.+.+ +.++|++||+.+++.
T Consensus 211 LD~~~~~~l-~~~L~~~~~-~~tiii~tH~~~~i~ 243 (285)
T PRK14254 211 LDPVATSKI-EDLIEELAE-EYTVVIVTHNMQQAA 243 (285)
T ss_pred CCHHHHHHH-HHHHHHHhc-CCEEEEEeCCHHHHH
Confidence 999887777 555555655 479999999998865
No 293
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=5.2e-16 Score=172.45 Aligned_cols=148 Identities=16% Similarity=0.154 Sum_probs=101.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------h--------------------hcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------G--------------------ICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------a--------------------~~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+|+|+|+... + +...|+|++..
T Consensus 37 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 116 (272)
T PRK14236 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN 116 (272)
T ss_pred CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCc
Confidence 4579999999 899999999999999999999998431 0 11235665543
Q ss_pred Chh--hHHH----------------------HHHhcCCCC----CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 790 SIP--YFDA----------------------IMLHMKSYD----SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~d~----------------------i~~~~~~~d----~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.++ ..++ ++..++..+ ........+|+|++|... +.+.+.+|+++||||||
T Consensus 117 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 196 (272)
T PRK14236 117 PFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT 196 (272)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 221 1111 122223321 223445678888887544 46678999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
+|+|+.....+ ..++..+.+ +.++|++||+.+.+. .+++...+.++.+
T Consensus 197 ~gLD~~~~~~l-~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i 245 (272)
T PRK14236 197 SALDPISTLKI-EELITELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKL 245 (272)
T ss_pred ccCCHHHHHHH-HHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 99999887777 555555555 689999999998754 4554444444443
No 294
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=7e-16 Score=171.33 Aligned_cols=148 Identities=14% Similarity=0.151 Sum_probs=100.3
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----hh-----------------------cceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----GI-----------------------CGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----a~-----------------------~G~~vpa~~~ 789 (1051)
+..++++++| |++++|+|+||||||||+|+|+|+... .. ...|+|++..
T Consensus 36 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 115 (271)
T PRK14238 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN 115 (271)
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc
Confidence 4568999998 899999999999999999999998530 01 1235565533
Q ss_pred Chh--hHHHHH----------------------HhcC----CCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 790 SIP--YFDAIM----------------------LHMK----SYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~d~i~----------------------~~~~----~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.++ ..+++. ..++ ..+.+......+|+|+++... +.+.+.+|+++||||||
T Consensus 116 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt 195 (271)
T PRK14238 116 PFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPT 195 (271)
T ss_pred cccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 221 112221 1111 111223455678988888544 46668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
+|+|+.....+.. ++..+.+ +.++|++||+.+.+. .+++...+.++.+
T Consensus 196 ~~LD~~~~~~l~~-~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i 244 (271)
T PRK14238 196 SALDPISTLKVEE-LVQELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYV 244 (271)
T ss_pred CcCCHHHHHHHHH-HHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEE
Confidence 9999988888854 5555655 689999999998754 4554444444433
No 295
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.66 E-value=6.7e-16 Score=179.87 Aligned_cols=150 Identities=17% Similarity=0.211 Sum_probs=114.8
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh--------------------hcc-eeecCCCCChhh-
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICG-LMVPAESASIPY- 793 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la--------------------~~G-~~vpa~~~~i~~- 793 (1051)
++..++++++| |++++|+|.||+|||||+|+|+|.+... ..| ..|+|+-+.+|.
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~L 98 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNL 98 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCc
Confidence 56789999999 8999999999999999999999987210 111 134444332221
Q ss_pred ---------------------------HHHHHHhcCCCCCccCCccchhHHHHHHHHHHHH-cCCCcEEEEcCCCCCCCH
Q 001570 794 ---------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTET 845 (1051)
Q Consensus 794 ---------------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~-a~~~sLlLLDEp~~GlD~ 845 (1051)
...++.+++....+.....+++.+.+|+..|++. ..++++|||||||+.|+.
T Consensus 99 sVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~ 178 (500)
T COG1129 99 SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTV 178 (500)
T ss_pred cHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 2346666777555788889999999998777554 678899999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCccccccccccee
Q 001570 846 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 846 ~~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~ 890 (1051)
.+...+ ..+++.|+++|.++||+||.++.+ +++++..-+..+..
T Consensus 179 ~E~~~L-f~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~ 223 (500)
T COG1129 179 KETERL-FDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRV 223 (500)
T ss_pred HHHHHH-HHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEE
Confidence 998888 788888999999999999987654 56666555555443
No 296
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=6.7e-16 Score=170.55 Aligned_cols=140 Identities=16% Similarity=0.142 Sum_probs=98.2
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------------hhcceeecCCC
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------GICGLMVPAES 788 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------------a~~G~~vpa~~ 788 (1051)
++..++++++| |++++|+||||||||||+|+|+|+... .+...++|++.
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 45679999999 899999999999999999999998532 01123556553
Q ss_pred CCh--hhH--------------------HHHHHhcCCCC----CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCC
Q 001570 789 ASI--PYF--------------------DAIMLHMKSYD----SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICR 841 (1051)
Q Consensus 789 ~~i--~~~--------------------d~i~~~~~~~d----~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~ 841 (1051)
..+ ... ..++..+++.. ........+|+|++|... +.+.+.+|+++||||||+
T Consensus 99 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPts 178 (261)
T PRK14263 99 NPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCS 178 (261)
T ss_pred ccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 221 111 12333344422 122445678999888554 466789999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccc
Q 001570 842 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 842 GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~ 881 (1051)
|||+.....+ ..+++.+.+ +.++|++||+++.+. ++++
T Consensus 179 gLD~~~~~~l-~~~l~~~~~-~~tii~isH~~~~i~~~~d~ 217 (261)
T PRK14263 179 ALDPIATRRV-EELMVELKK-DYTIALVTHNMQQAIRVADT 217 (261)
T ss_pred cCCHHHHHHH-HHHHHHHhc-CCeEEEEeCCHHHHHHhCCE
Confidence 9999888888 444455554 789999999998653 4443
No 297
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=3.7e-16 Score=160.66 Aligned_cols=150 Identities=15% Similarity=0.190 Sum_probs=105.0
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhcceeecCCCC-Chh--
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAESA-SIP-- 792 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G~~vpa~~~-~i~-- 792 (1051)
.++.++++++| |++++|+||||+|||||||.++|-.. +++.-...||... .+|
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 46789999999 89999999999999999999999651 2322223343321 111
Q ss_pred -----------------------hHHHHHHhcCCCCCccCCccchhHHHHHH---HHHHHHcC----CCcEEEEcCCCCC
Q 001570 793 -----------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEI---RSIVTATT----SRSLVLIDEICRG 842 (1051)
Q Consensus 793 -----------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~---~~il~~a~----~~sLlLLDEp~~G 842 (1051)
+..+.+...+......+...++|+|.+|. +..+++.. ++..++|||||+.
T Consensus 92 v~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsa 171 (259)
T COG4559 92 VQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171 (259)
T ss_pred HHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccc
Confidence 13345555555555555666788777763 44455544 3459999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 843 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 843 lD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
||...+..+ ..+.+.+.+.|..|+.+-||++++. +++...-+..+++
T Consensus 172 LDi~HQ~~t-l~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv 219 (259)
T COG4559 172 LDIAHQHHT-LRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRV 219 (259)
T ss_pred cchHHHHHH-HHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeE
Confidence 999998888 6777778888999999999999986 3444333333333
No 298
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=8.2e-16 Score=169.87 Aligned_cols=143 Identities=18% Similarity=0.238 Sum_probs=98.3
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh----hc-----------------------ceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----IC-----------------------GLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la----~~-----------------------G~~vpa~~~ 789 (1051)
+..++++++| |++++|+||||||||||+++|+|+.... .. ..++|++..
T Consensus 19 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 98 (261)
T PRK14258 19 TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN 98 (261)
T ss_pred CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc
Confidence 3468999999 8999999999999999999999986421 01 224454432
Q ss_pred Chh--hHHH----------------------HHHhcCCCC----CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 790 SIP--YFDA----------------------IMLHMKSYD----SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~d~----------------------i~~~~~~~d----~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.++ ..+. ++..++..+ ........+|+|+++... +.+.+.+|+++||||||
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~ 178 (261)
T PRK14258 99 LFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178 (261)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 211 1111 122233321 234455789999988554 46668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-cCCcEEEEeccChhhhh-Ccccccc
Q 001570 841 RGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFS-LPLKIKN 884 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~-~~g~~vi~~TH~~el~~-l~~~~~~ 884 (1051)
+|+|+.....+. .++..++ +.|.|+|++||+++++. .+++...
T Consensus 179 ~~LD~~~~~~l~-~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~ 223 (261)
T PRK14258 179 FGLDPIASMKVE-SLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAF 223 (261)
T ss_pred ccCCHHHHHHHH-HHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEE
Confidence 999998887774 4444454 35899999999998764 4444333
No 299
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=6.2e-16 Score=161.44 Aligned_cols=137 Identities=18% Similarity=0.210 Sum_probs=103.7
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhH----------------------Hhhhcceee-cCCCCChhh-
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS----------------------LLGICGLMV-PAESASIPY- 793 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~----------------------~la~~G~~v-pa~~~~i~~- 793 (1051)
+.+++++++ |++.+|+||||||||||.++|+|.- -.|+.|.|+ +|.+..+|-
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 589999999 8999999999999999999999964 235666655 233333221
Q ss_pred --------------------------HHHHHHhcCCCC-CccCCc-cchhHHHHHHHHHHHH-cCCCcEEEEcCCCCCCC
Q 001570 794 --------------------------FDAIMLHMKSYD-SPADGK-SSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTE 844 (1051)
Q Consensus 794 --------------------------~d~i~~~~~~~d-~~~~~~-stfs~e~~~~~~il~~-a~~~sLlLLDEp~~GlD 844 (1051)
++..+..+++.. .+.+.. -.||+|.++...+++. +.+|++.|||||-||+|
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD 176 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence 122333444443 122222 3688888888887765 78999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCc
Q 001570 845 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 879 (1051)
Q Consensus 845 ~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~ 879 (1051)
. ++..+....++.+++.|..++++|||.++++..
T Consensus 177 I-dalk~V~~~i~~lr~~~~~~liITHy~rll~~i 210 (251)
T COG0396 177 I-DALKIVAEGINALREEGRGVLIITHYQRLLDYI 210 (251)
T ss_pred H-HHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhc
Confidence 9 777777888899999999999999999998764
No 300
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.2e-15 Score=168.89 Aligned_cols=147 Identities=19% Similarity=0.211 Sum_probs=100.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------------hhcceeecCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------------GICGLMVPAE 787 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------------a~~G~~vpa~ 787 (1051)
++.++++++| |++++|+||||||||||+++|+|+... .+...|+|++
T Consensus 28 ~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 107 (265)
T PRK14252 28 GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQK 107 (265)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccC
Confidence 4579999999 899999999999999999999997521 0112356665
Q ss_pred CCChh--hHHH----------------------HHHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcC
Q 001570 788 SASIP--YFDA----------------------IMLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDE 838 (1051)
Q Consensus 788 ~~~i~--~~d~----------------------i~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDE 838 (1051)
...++ ..+. .+..++.. +........+|+|+++... +.+.+.+|+++||||
T Consensus 108 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 187 (265)
T PRK14252 108 PNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDE 187 (265)
T ss_pred CcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 32211 1111 12222321 1223455678888888554 466689999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccccccccce
Q 001570 839 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKA 889 (1051)
Q Consensus 839 p~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~ 889 (1051)
||+|+|+.....+ ..++..+.+ +.++|++||+.+.+. .+++...+..+.
T Consensus 188 Pt~gLD~~~~~~l-~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~ 237 (265)
T PRK14252 188 PTSALDPIATASI-EELISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGE 237 (265)
T ss_pred CCccCCHHHHHHH-HHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 9999999888877 445555655 689999999998764 555443333333
No 301
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.1e-15 Score=168.59 Aligned_cols=135 Identities=16% Similarity=0.220 Sum_probs=95.6
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh----hc-----------------------ceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----IC-----------------------GLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la----~~-----------------------G~~vpa~~~ 789 (1051)
+..++++++| |++++|+|+||||||||+|+|+|+.... .. -.++|++..
T Consensus 19 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (259)
T PRK14260 19 TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN 98 (259)
T ss_pred CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc
Confidence 4578999999 8999999999999999999999975310 01 124555432
Q ss_pred Chh--hH----------------------HHHHHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 790 SIP--YF----------------------DAIMLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~----------------------d~i~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.++ .. .+++..++.. +........+|+|+++... +.+.+.+|+++||||||
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 178 (259)
T PRK14260 99 PFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178 (259)
T ss_pred cCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 211 11 1122333432 2334556788998888544 46668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
+|+|+.....+ ..++..+.+ +.|+|++||+++.+.
T Consensus 179 ~~LD~~~~~~l-~~~l~~~~~-~~tiii~tH~~~~i~ 213 (259)
T PRK14260 179 SALDPIATMKV-EELIHSLRS-ELTIAIVTHNMQQAT 213 (259)
T ss_pred ccCCHHHHHHH-HHHHHHHhc-CCEEEEEeCCHHHHH
Confidence 99999888877 445555554 589999999998764
No 302
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.6e-16 Score=187.99 Aligned_cols=143 Identities=11% Similarity=0.112 Sum_probs=100.8
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------hcceeecCCCCChh---------------
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESASIP--------------- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------~~G~~vpa~~~~i~--------------- 792 (1051)
++.+++++|| |++++|+||||||||||||+|+|+.... ..-.|+|+....++
T Consensus 13 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 92 (530)
T PRK15064 13 AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTEL 92 (530)
T ss_pred CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHH
Confidence 4679999998 8999999999999999999999986321 11135666432110
Q ss_pred -----------------------------------------hHHHHHHhcCCCCCc-cCCccchhHHHHHHHHH-HHHcC
Q 001570 793 -----------------------------------------YFDAIMLHMKSYDSP-ADGKSSFQVEMSEIRSI-VTATT 829 (1051)
Q Consensus 793 -----------------------------------------~~d~i~~~~~~~d~~-~~~~stfs~e~~~~~~i-l~~a~ 829 (1051)
.+..++..+++.+.. ....+++|+||++...+ .+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~ 172 (530)
T PRK15064 93 WEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFS 172 (530)
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhc
Confidence 112344555664433 34568999999986555 56689
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccc
Q 001570 830 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAY 887 (1051)
Q Consensus 830 ~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~ 887 (1051)
+|+++||||||+|||+.....+... +.+.|.|||++||+.+++. .+++...+.+
T Consensus 173 ~p~lLlLDEPt~~LD~~~~~~l~~~----l~~~~~tiiivsHd~~~~~~~~d~i~~l~~ 227 (530)
T PRK15064 173 NPDILLLDEPTNNLDINTIRWLEDV----LNERNSTMIIISHDRHFLNSVCTHMADLDY 227 (530)
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHH----HHhCCCeEEEEeCCHHHHHhhcceEEEEeC
Confidence 9999999999999999887666333 3346899999999998764 4444333333
No 303
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.65 E-value=6.1e-16 Score=188.50 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=97.3
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------hcceeecCCCCChh---hHHHH-------
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESASIP---YFDAI------- 797 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------~~G~~vpa~~~~i~---~~d~i------- 797 (1051)
++.+++++|| |++++|+||||||||||||+|+|++... ....|+|++...++ ..+.+
T Consensus 19 ~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~ 98 (556)
T PRK11819 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEV 98 (556)
T ss_pred CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHH
Confidence 5789999999 8999999999999999999999987321 11237777643221 11211
Q ss_pred --------------------------------------------------HHhcCCCCCccCCccchhHHHHHHHH-HHH
Q 001570 798 --------------------------------------------------MLHMKSYDSPADGKSSFQVEMSEIRS-IVT 826 (1051)
Q Consensus 798 --------------------------------------------------~~~~~~~d~~~~~~stfs~e~~~~~~-il~ 826 (1051)
+..+++. ...+..+++|+|+++... +.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~LSgGqkqrv~la~a 177 (556)
T PRK11819 99 KAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTKLSGGERRRVALCRL 177 (556)
T ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhhcCHHHHHHHHHHHH
Confidence 1222332 245667889999988554 466
Q ss_pred HcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Ccccc
Q 001570 827 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKI 882 (1051)
Q Consensus 827 ~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~ 882 (1051)
.+.+|+++||||||+|||+.....+ ..++..+ +.|+|++||+.+++. .++..
T Consensus 178 l~~~p~vlLLDEPt~~LD~~~~~~l-~~~L~~~---~~tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 178 LLEKPDMLLLDEPTNHLDAESVAWL-EQFLHDY---PGTVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred HhCCCCEEEEcCCCCcCChHHHHHH-HHHHHhC---CCeEEEEeCCHHHHHhhcCeE
Confidence 6899999999999999999877666 3333333 459999999998875 34433
No 304
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=1.3e-15 Score=149.80 Aligned_cols=152 Identities=17% Similarity=0.161 Sum_probs=116.6
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------------hhhcceeecCCCC
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------------LGICGLMVPAESA 789 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------------la~~G~~vpa~~~ 789 (1051)
|...++-||+| |+.++++||+|+|||||+|.+..+.. +.+...+|++.+.
T Consensus 13 g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~ 92 (242)
T COG4161 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92 (242)
T ss_pred ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhc
Confidence 45678999999 89999999999999999999998752 1222235666554
Q ss_pred ChhhH-------------------------HHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCC
Q 001570 790 SIPYF-------------------------DAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGT 843 (1051)
Q Consensus 790 ~i~~~-------------------------d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~Gl 843 (1051)
..|++ .+++.++...+..++..-.+|+|++|... +.+.+.+|.++|+||||+.|
T Consensus 93 lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaal 172 (242)
T COG4161 93 LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172 (242)
T ss_pred cCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCccccc
Confidence 44431 24666777777777888888998887554 46679999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhC-cccccccccceeEE
Q 001570 844 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL-PLKIKNAAYKAMGT 892 (1051)
Q Consensus 844 D~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l-~~~~~~i~~~~~~~ 892 (1051)
||+-...+ -.|++.|.+.|.|-+++||..+.+.- +.+...+.++++..
T Consensus 173 dpeitaqv-v~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive 221 (242)
T COG4161 173 DPEITAQI-VSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221 (242)
T ss_pred CHHHHHHH-HHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEe
Confidence 99887777 78888899999999999999998863 33344455555543
No 305
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=2.6e-16 Score=159.90 Aligned_cols=150 Identities=19% Similarity=0.179 Sum_probs=113.4
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhccee------------
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLM------------ 783 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G~~------------ 783 (1051)
+++.|++++|+ |.++.|+||||+||||||-+++.++- +|+.-+.
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlT 91 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT 91 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeE
Confidence 56789999998 89999999999999999999999871 1111111
Q ss_pred ---------ecCCCCCh-----hhHHHHHHhcCCCCCccCCccchhHHHHHHHHHH-HHcCCCcEEEEcCCCCCCCHHHH
Q 001570 784 ---------VPAESASI-----PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV-TATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 784 ---------vpa~~~~i-----~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il-~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
.|-....+ ..+++.+..+.+.+...+.+.++|+|++|.+.++ -.+++.+.++||||.++||....
T Consensus 92 V~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHs 171 (252)
T COG4604 92 VRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171 (252)
T ss_pred HHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHH
Confidence 12111111 2356677778888888888899999999988874 45899999999999999999999
Q ss_pred HHHHHHHHHHH-HcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 849 TCIAGSIIETL-DNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 849 ~~l~~~ile~L-~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
.++ +.+++.+ .+.|.|++++-||.++|. ..++...+.++.+
T Consensus 172 v~i-Mk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~v 214 (252)
T COG4604 172 VQI-MKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKV 214 (252)
T ss_pred HHH-HHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEE
Confidence 999 5555555 467999999999999986 4444444445444
No 306
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=9e-16 Score=174.71 Aligned_cols=149 Identities=16% Similarity=0.144 Sum_probs=104.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------------hhcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------------GICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------------a~~G~~vpa~~~ 789 (1051)
...++++++| |++++|+||||||||||+++|+|+... .+.-.++|+...
T Consensus 94 ~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~ 173 (329)
T PRK14257 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173 (329)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 4579999999 899999999999999999999998631 112336776643
Q ss_pred Chh--hHHH----------------------HHHhcCCC----CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCC
Q 001570 790 SIP--YFDA----------------------IMLHMKSY----DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~d~----------------------i~~~~~~~----d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~ 840 (1051)
.+. ..++ ++..+++. +.+......+|+|++|... +.+.+.+|+++||||||
T Consensus 174 ~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPt 253 (329)
T PRK14257 174 PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPT 253 (329)
T ss_pred cCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 221 1111 12233322 2344666789999988554 46668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-CcccccccccceeE
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMG 891 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~~ 891 (1051)
+|+|+.....+ ..++..+.+ ++|+|++||+++.+. .+++...+..+.+.
T Consensus 254 s~LD~~~~~~i-~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~ 303 (329)
T PRK14257 254 SALDPIATAKI-EELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIE 303 (329)
T ss_pred ccCCHHHHHHH-HHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999888887 555556655 689999999999865 46655444444443
No 307
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.6e-15 Score=166.35 Aligned_cols=136 Identities=21% Similarity=0.262 Sum_probs=95.3
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--h-------------------------hhcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--L-------------------------GICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--l-------------------------a~~G~~vpa~~~ 789 (1051)
++.++++++| |++++|+||||||||||+++|+|+.. . .+...|+|++..
T Consensus 15 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14266 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94 (250)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc
Confidence 4579999999 89999999999999999999999742 1 011235666543
Q ss_pred Chh--hHHHH----------------------HHhcCCCC----CccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCCC
Q 001570 790 SIP--YFDAI----------------------MLHMKSYD----SPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~d~i----------------------~~~~~~~d----~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~ 840 (1051)
.++ ..+++ +..++..+ ........+|+|+++. ..+.+.+.+|+++|||||+
T Consensus 95 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~ 174 (250)
T PRK14266 95 PFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPC 174 (250)
T ss_pred cCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 221 11111 22223211 1234456788888874 4456678999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
+|+|+.....+ ..++..+++ +.++|++||+.+.+..
T Consensus 175 ~gLD~~~~~~l-~~~l~~~~~-~~tiii~sh~~~~~~~ 210 (250)
T PRK14266 175 SALDPISTTKI-EDLIHKLKE-DYTIVIVTHNMQQATR 210 (250)
T ss_pred ccCCHHHHHHH-HHHHHHHhc-CCeEEEEECCHHHHHh
Confidence 99999888887 455555554 7899999999987654
No 308
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.4e-15 Score=168.43 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=94.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------h--------------------hcceeecCCCC
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------G--------------------ICGLMVPAESA 789 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------a--------------------~~G~~vpa~~~ 789 (1051)
+..++++++| |++++|+||||||||||+|+|+|+... + +...++|++..
T Consensus 22 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 101 (264)
T PRK14243 22 SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN 101 (264)
T ss_pred CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc
Confidence 4578999998 899999999999999999999987521 0 01235555432
Q ss_pred Chh--hHHH--------------------HHHhcCCC----CCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCC
Q 001570 790 SIP--YFDA--------------------IMLHMKSY----DSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRG 842 (1051)
Q Consensus 790 ~i~--~~d~--------------------i~~~~~~~----d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~G 842 (1051)
.++ ..++ ++..++.. +........+|+|++|.. .+.+.+.+|+++|||||++|
T Consensus 102 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 181 (264)
T PRK14243 102 PFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA 181 (264)
T ss_pred cccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 221 1111 12222221 122345567899888854 45666899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh
Q 001570 843 TETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 843 lD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
||+.....+ ..++..+.+ +.++|++||+.+.+.
T Consensus 182 LD~~~~~~l-~~~L~~~~~-~~tvi~vtH~~~~~~ 214 (264)
T PRK14243 182 LDPISTLRI-EELMHELKE-QYTIIIVTHNMQQAA 214 (264)
T ss_pred CCHHHHHHH-HHHHHHHhc-CCEEEEEecCHHHHH
Confidence 999888887 555555655 589999999988754
No 309
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.64 E-value=1.1e-15 Score=186.21 Aligned_cols=158 Identities=13% Similarity=0.116 Sum_probs=113.2
Q ss_pred CcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCC
Q 001570 733 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAES 788 (1051)
Q Consensus 733 ~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~ 788 (1051)
++.+.++++.+++++++| |+.++|+||||||||||+++|+|+... .+.-.+||++.
T Consensus 327 ~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 406 (547)
T PRK10522 327 NVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDF 406 (547)
T ss_pred EEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecCh
Confidence 444555555679999999 899999999999999999999998621 12234777765
Q ss_pred CChh-------------hHHHHHHhcCCCCCccCC-----ccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 789 ASIP-------------YFDAIMLHMKSYDSPADG-----KSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 789 ~~i~-------------~~d~i~~~~~~~d~~~~~-----~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
..++ .+.+.+..++..+....+ -..+|+|++| ++.+.+.+.+|+++||||||+++|+....
T Consensus 407 ~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~ 486 (547)
T PRK10522 407 HLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRR 486 (547)
T ss_pred hHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 3221 122344555555433221 2478888887 45556779999999999999999998888
Q ss_pred HHHHHHHHHHHcCCcEEEEeccChhhhhCccccccccccee
Q 001570 850 CIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 890 (1051)
Q Consensus 850 ~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~ 890 (1051)
.+...+.+.+++.+.|+|++||+.+....+++...+.++++
T Consensus 487 ~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i 527 (547)
T PRK10522 487 EFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQL 527 (547)
T ss_pred HHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEE
Confidence 88667766665568999999999988777665544444443
No 310
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=3.3e-16 Score=165.61 Aligned_cols=154 Identities=16% Similarity=0.087 Sum_probs=114.2
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------------hcceeecCCCCC--------h-
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------------ICGLMVPAESAS--------I- 791 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------------~~G~~vpa~~~~--------i- 791 (1051)
....+|+|||| |+.++|+|+||||||||+|+|+|++.+. -.+.|-|.-... +
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~ 117 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLIL 117 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHh
Confidence 34679999999 8999999999999999999999998332 112233322111 0
Q ss_pred --------hhHHHHHHhcCCCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC
Q 001570 792 --------PYFDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 862 (1051)
Q Consensus 792 --------~~~d~i~~~~~~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~ 862 (1051)
..+|.|.+.-.+.+.+..+..++|.||+- ++..++...+|+++||||..+--|+.-...- ...++.+.+.
T Consensus 118 G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~-~~rl~e~~~~ 196 (249)
T COG1134 118 GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC-LERLNELVEK 196 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHH-HHHHHHHHHc
Confidence 11355655556778889999999999985 7778888999999999999999999777666 4444555556
Q ss_pred CcEEEEeccChhhhh-CcccccccccceeEEEE
Q 001570 863 GCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTEY 894 (1051)
Q Consensus 863 g~~vi~~TH~~el~~-l~~~~~~i~~~~~~~~~ 894 (1051)
+.|+|++||+++.+. .+++..-+..+.+.+..
T Consensus 197 ~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G 229 (249)
T COG1134 197 NKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEG 229 (249)
T ss_pred CCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcC
Confidence 799999999998764 55555555555555443
No 311
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.64 E-value=5.4e-16 Score=176.52 Aligned_cols=136 Identities=15% Similarity=0.078 Sum_probs=98.0
Q ss_pred EEcCCCCCcchHHHHHHhhHHh------------------hhcceeecCCCCChhh------------------------
Q 001570 756 LTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY------------------------ 793 (1051)
Q Consensus 756 ItGpNGsGKSTLLk~I~gl~~l------------------a~~G~~vpa~~~~i~~------------------------ 793 (1051)
|+||||||||||||+|+|+... .+...|+|++...++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999998621 1112366766433221
Q ss_pred HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccC
Q 001570 794 FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 872 (1051)
Q Consensus 794 ~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~ 872 (1051)
++.++..+++.+...+...++|+|++|... +.+.+.+|+++|||||++|||+.....+...+.+..++.|.|+|++||+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 123455667776677778899999998554 4666899999999999999999988888555554444558999999999
Q ss_pred hhhhh-CcccccccccceeE
Q 001570 873 HGIFS-LPLKIKNAAYKAMG 891 (1051)
Q Consensus 873 ~el~~-l~~~~~~i~~~~~~ 891 (1051)
.+.+. ++++...+.++.+.
T Consensus 161 ~~e~~~~~d~i~vl~~G~i~ 180 (325)
T TIGR01187 161 QEEAMTMSDRIAIMRKGKIA 180 (325)
T ss_pred HHHHHHhCCEEEEEECCEEE
Confidence 98754 56555444455443
No 312
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.64 E-value=7.9e-16 Score=180.34 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=113.4
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----------------------------hhcceeecCCCC
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------------GICGLMVPAESA 789 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----------------------------a~~G~~vpa~~~ 789 (1051)
..+++|+|| |++++|+|.+||||||+.++|.|+... .....++||+..
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 469999999 899999999999999999999998721 122347777742
Q ss_pred C-h-h-------------------------hHHHHHHhcCCCCCccC--CccchhHHHHHHHHH-HHHcCCCcEEEEcCC
Q 001570 790 S-I-P-------------------------YFDAIMLHMKSYDSPAD--GKSSFQVEMSEIRSI-VTATTSRSLVLIDEI 839 (1051)
Q Consensus 790 ~-i-~-------------------------~~d~i~~~~~~~d~~~~--~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp 839 (1051)
. + | ...+++..+++.+.... ....||+||+|...| ++.+.+|+|+|+|||
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP 181 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC
Confidence 1 1 1 02346677788776655 778999999996554 677999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccccee
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~ 890 (1051)
|++||+..+..|...+.+.-.+.|+++||+|||++++. ++++..-+..+.+
T Consensus 182 TTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i 233 (539)
T COG1123 182 TTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233 (539)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEE
Confidence 99999999999966666655678999999999999865 4544333334443
No 313
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.64 E-value=1.5e-15 Score=173.44 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=117.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCCChhh--
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIPY-- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~~i~~-- 793 (1051)
+..+.+++|| |++.+|+|.||+||||||+++.|++.. .....+|.|++..++.
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lT 95 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLT 95 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccc
Confidence 6678888988 899999999999999999999999721 1112255555443321
Q ss_pred -------------------------HHHHHHhcCCCCCccCCccchhHHHHHHHHHHHH-cCCCcEEEEcCCCCCCCHHH
Q 001570 794 -------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 794 -------------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~-a~~~sLlLLDEp~~GlD~~~ 847 (1051)
+..+..++|+.-+++...+.++.+++|...|++. ..+++++||||||+-|.|.+
T Consensus 96 V~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E 175 (501)
T COG3845 96 VAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175 (501)
T ss_pred hhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 3456777888888889999999999998888765 78999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccChhhh-hCccccccccccee
Q 001570 848 GTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 848 ~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~~~ 890 (1051)
...+ ..+++.|++.|++|||+||-++++ +.+++..-+..+++
T Consensus 176 ~~~l-f~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkv 218 (501)
T COG3845 176 ADEL-FEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKV 218 (501)
T ss_pred HHHH-HHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeE
Confidence 9998 777788999999999999987665 45665555555543
No 314
>PLN03211 ABC transporter G-25; Provisional
Probab=99.64 E-value=5.2e-16 Score=191.44 Aligned_cols=152 Identities=14% Similarity=0.106 Sum_probs=108.7
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh------------------hcceeecCCCCChhh-----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------------------ICGLMVPAESASIPY----- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la------------------~~G~~vpa~~~~i~~----- 793 (1051)
++.+++++|+ |++++|+|||||||||||++|+|..... +...|||++...++.
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRE 159 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHH
Confidence 5679999998 8999999999999999999999985321 112467766432211
Q ss_pred ----------------------HHHHHHhcCCCCCc-----cCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCH
Q 001570 794 ----------------------FDAIMLHMKSYDSP-----ADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTET 845 (1051)
Q Consensus 794 ----------------------~d~i~~~~~~~d~~-----~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~ 845 (1051)
++.++..+|+.+.. ......+|+|+++.. .+.+.+.+|+++||||||+|||+
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~ 239 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCH
Confidence 22344455554422 223467899888854 45677999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccChh--hhhCcccccccccceeEEE
Q 001570 846 AKGTCIAGSIIETLDNIGCLGIVSTHLHG--IFSLPLKIKNAAYKAMGTE 893 (1051)
Q Consensus 846 ~~~~~l~~~ile~L~~~g~~vi~~TH~~e--l~~l~~~~~~i~~~~~~~~ 893 (1051)
.....+ ..+++.+++.|.|+|++||+++ +.+++++...+..+++...
T Consensus 240 ~~~~~l-~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~ 288 (659)
T PLN03211 240 TAAYRL-VLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFF 288 (659)
T ss_pred HHHHHH-HHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEE
Confidence 888888 4555567667999999999985 4566665555555555433
No 315
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.63 E-value=3.4e-15 Score=183.48 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=111.5
Q ss_pred cccccCCC-ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhcceeecCCC
Q 001570 734 YWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAES 788 (1051)
Q Consensus 734 ~~~~~~~~-~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G~~vpa~~ 788 (1051)
+.+.|..+ ..+++|+++ |+.++|+|+||||||||+|.+.|+.. +.+.-.+|||+.
T Consensus 477 vsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~ 556 (709)
T COG2274 477 VSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDP 556 (709)
T ss_pred EEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccc
Confidence 34555444 469999999 89999999999999999999999872 233445888886
Q ss_pred CChh--h------------HHHHHH------------h--cCCCCCccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCC
Q 001570 789 ASIP--Y------------FDAIML------------H--MKSYDSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEI 839 (1051)
Q Consensus 789 ~~i~--~------------~d~i~~------------~--~~~~d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp 839 (1051)
..+. . .+++.. . +|.+..+.++-+.+|+|++|. +.+++..++|+++|||||
T Consensus 557 ~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEa 636 (709)
T COG2274 557 FLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEA 636 (709)
T ss_pred hhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 4331 0 111211 1 134444455667899999984 455667999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeE
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 891 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~ 891 (1051)
||+||+.....+...+.+.. .|+|+|++||.+.....+++...+..+.+.
T Consensus 637 TSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv 686 (709)
T COG2274 637 TSALDPETEAIILQNLLQIL--QGRTVIIIAHRLSTIRSADRIIVLDQGKIV 686 (709)
T ss_pred ccccCHhHHHHHHHHHHHHh--cCCeEEEEEccchHhhhccEEEEccCCcee
Confidence 99999987776655555443 369999999999998877765544444443
No 316
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.1e-15 Score=188.55 Aligned_cols=138 Identities=16% Similarity=0.096 Sum_probs=97.6
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhh-----cc----eeecCCC-----CChh---------
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG----LMVPAES-----ASIP--------- 792 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~-----~G----~~vpa~~-----~~i~--------- 792 (1051)
+++.+++++|| |++++|+||||||||||||+|+|+..... .| .++++.. ..+.
T Consensus 12 g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~ 91 (638)
T PRK10636 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREY 91 (638)
T ss_pred CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHH
Confidence 45679999999 89999999999999999999999862210 01 1344321 0011
Q ss_pred ------------------------------------hHHHHHHhcCCC-CCccCCccchhHHHHHHHHH-HHHcCCCcEE
Q 001570 793 ------------------------------------YFDAIMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLV 834 (1051)
Q Consensus 793 ------------------------------------~~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~i-l~~a~~~sLl 834 (1051)
.+..++..+|+. +......+++|+|+++...+ ...+.+|+++
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lL 171 (638)
T PRK10636 92 RQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLL 171 (638)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEE
Confidence 012234455664 34567788999999986555 5668999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccc
Q 001570 835 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLK 881 (1051)
Q Consensus 835 LLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~ 881 (1051)
||||||+|||+.....+ .+.|.+.+.++|++|||.+++. .++.
T Consensus 172 LLDEPtn~LD~~~~~~L----~~~L~~~~~tviivsHd~~~l~~~~d~ 215 (638)
T PRK10636 172 LLDEPTNHLDLDAVIWL----EKWLKSYQGTLILISHDRDFLDPIVDK 215 (638)
T ss_pred EEcCCCCcCCHHHHHHH----HHHHHhCCCeEEEEeCCHHHHHHhcCE
Confidence 99999999999775544 3444445679999999998865 3443
No 317
>PRK13409 putative ATPase RIL; Provisional
Probab=99.63 E-value=9.6e-16 Score=186.88 Aligned_cols=140 Identities=14% Similarity=0.152 Sum_probs=104.8
Q ss_pred ccCCCceeeeeEee---ceEEEEEcCCCCCcchHHHHHHhhHHhh--h--------------cc----------------
Q 001570 737 DAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLG--I--------------CG---------------- 781 (1051)
Q Consensus 737 ~~~~~~~vl~~isl---g~i~~ItGpNGsGKSTLLk~I~gl~~la--~--------------~G---------------- 781 (1051)
.|.++.+++.+++. |++++|+||||+|||||+|+|+|++... . .|
T Consensus 82 ~yg~~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~ 161 (590)
T PRK13409 82 RYGVNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIK 161 (590)
T ss_pred EecCCceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcc
Confidence 34444578999887 8999999999999999999999986211 0 01
Q ss_pred -eeecCCCCChh------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCC
Q 001570 782 -LMVPAESASIP------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICR 841 (1051)
Q Consensus 782 -~~vpa~~~~i~------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~ 841 (1051)
.+.|+....++ .++.++..+++.+...+..+++|+|++|...+ .+.+.+|+++||||||+
T Consensus 162 ~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts 241 (590)
T PRK13409 162 VVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTS 241 (590)
T ss_pred eeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 11222111111 13456677788777788899999999985554 56689999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 842 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 842 GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
+||+.....+ ..++..+.+ |.++|++||+.+++..
T Consensus 242 ~LD~~~~~~l-~~~i~~l~~-g~tvIivsHd~~~l~~ 276 (590)
T PRK13409 242 YLDIRQRLNV-ARLIRELAE-GKYVLVVEHDLAVLDY 276 (590)
T ss_pred CCCHHHHHHH-HHHHHHHHC-CCEEEEEeCCHHHHHH
Confidence 9999888888 556666777 9999999999987653
No 318
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.8e-15 Score=153.51 Aligned_cols=133 Identities=13% Similarity=0.154 Sum_probs=96.8
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhcc-----e---eec--------------CCCCCh--
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICG-----L---MVP--------------AESASI-- 791 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G-----~---~vp--------------a~~~~i-- 791 (1051)
++..++.+++| |+++.|+||||+|||||||+|+|+......- . -++ .-+..+
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence 45678888888 8999999999999999999999997321100 0 000 000000
Q ss_pred ----------------hhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHH-cCCCcEEEEcCCCCCCCHHHHHHHHHH
Q 001570 792 ----------------PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGS 854 (1051)
Q Consensus 792 ----------------~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~-a~~~sLlLLDEp~~GlD~~~~~~l~~~ 854 (1051)
.-+.+.+..+|..+..+.....+|.|++++..+.+. ++.++|.|||||++++|......+ ..
T Consensus 93 ~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l-~~ 171 (209)
T COG4133 93 LENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL-TA 171 (209)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHH-HH
Confidence 112345566788888888889999999997777665 788899999999999999554544 55
Q ss_pred HHHHHHcCCcEEEEeccCh
Q 001570 855 IIETLDNIGCLGIVSTHLH 873 (1051)
Q Consensus 855 ile~L~~~g~~vi~~TH~~ 873 (1051)
++......|-.||++||..
T Consensus 172 l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 172 LMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHHHhcCCCEEEEecCCc
Confidence 5555556677899999964
No 319
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.62 E-value=1.7e-15 Score=184.45 Aligned_cols=137 Identities=14% Similarity=0.112 Sum_probs=95.8
Q ss_pred ccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------hcceeecCCCCChh---hHHHH---
Q 001570 737 DAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESASIP---YFDAI--- 797 (1051)
Q Consensus 737 ~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------~~G~~vpa~~~~i~---~~d~i--- 797 (1051)
.+.+++.++++++| |++++|+||||||||||||+|+|+.... ....|+|+....++ ..+.+
T Consensus 13 ~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~ 92 (552)
T TIGR03719 13 VVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEG 92 (552)
T ss_pred ecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHh
Confidence 33324679999998 8999999999999999999999986321 11236777643221 11211
Q ss_pred ------------------------------------------------------HHhcCCCCCccCCccchhHHHHHHHH
Q 001570 798 ------------------------------------------------------MLHMKSYDSPADGKSSFQVEMSEIRS 823 (1051)
Q Consensus 798 ------------------------------------------------------~~~~~~~d~~~~~~stfs~e~~~~~~ 823 (1051)
+..+++. ......+++|+|+++...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~LSgGqkqrv~ 171 (552)
T TIGR03719 93 VAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVTKLSGGERRRVA 171 (552)
T ss_pred hHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchhhcCHHHHHHHH
Confidence 1112221 134566889999998555
Q ss_pred H-HHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 824 I-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 824 i-l~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
+ .+.+.+|+++||||||+|||+.....+... + .+.+.++|++||+.+++..
T Consensus 172 la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~-L---~~~~~tvIiisHd~~~~~~ 223 (552)
T TIGR03719 172 LCRLLLSKPDMLLLDEPTNHLDAESVAWLEQH-L---QEYPGTVVAVTHDRYFLDN 223 (552)
T ss_pred HHHHHhcCCCEEEEcCCCCCCChHHHHHHHHH-H---HhCCCeEEEEeCCHHHHHh
Confidence 4 666899999999999999999887766433 3 3334699999999987653
No 320
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.62 E-value=1.8e-15 Score=184.13 Aligned_cols=155 Identities=18% Similarity=0.182 Sum_probs=106.7
Q ss_pred CcccccCC-CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCC
Q 001570 733 PYWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAE 787 (1051)
Q Consensus 733 ~~~~~~~~-~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~ 787 (1051)
++.+.+++ ++.++++++| |+.++|+||||||||||+|+++|+... .+.-.+||++
T Consensus 321 ~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 400 (544)
T TIGR01842 321 NVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQD 400 (544)
T ss_pred EEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCC
Confidence 33445543 3679999999 899999999999999999999998721 1223477777
Q ss_pred CCChh--hHHH------------------------HHHhc--CCCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcC
Q 001570 788 SASIP--YFDA------------------------IMLHM--KSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDE 838 (1051)
Q Consensus 788 ~~~i~--~~d~------------------------i~~~~--~~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDE 838 (1051)
...++ ..++ .+..+ |.+..+..+-..+|+|++| ++.+.+.+.+|+++||||
T Consensus 401 ~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDE 480 (544)
T TIGR01842 401 VELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDE 480 (544)
T ss_pred cccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 53321 1111 12222 2222334445678988887 455566799999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccc
Q 001570 839 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 888 (1051)
Q Consensus 839 p~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~ 888 (1051)
||+|+|+.....+... +..+...+.|+|++||+.+..+.+++...+.++
T Consensus 481 pts~LD~~~~~~i~~~-l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G 529 (544)
T TIGR01842 481 PNSNLDEEGEQALANA-IKALKARGITVVVITHRPSLLGCVDKILVLQDG 529 (544)
T ss_pred CccccCHHHHHHHHHH-HHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 9999999887777444 444544579999999999877665544333333
No 321
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.8e-15 Score=183.65 Aligned_cols=134 Identities=12% Similarity=0.091 Sum_probs=98.5
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------hcceeecCCCC--C---hhh---------
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESA--S---IPY--------- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------~~G~~vpa~~~--~---i~~--------- 793 (1051)
++.++++++| |++++|+||||||||||+|+|+|+.... ..-.|+|++.. . +..
T Consensus 331 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 410 (530)
T PRK15064 331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQ 410 (530)
T ss_pred CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhcc
Confidence 4578999998 8999999999999999999999986211 11236776532 1 111
Q ss_pred -------HHHHHHhcCCC-CCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCc
Q 001570 794 -------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC 864 (1051)
Q Consensus 794 -------~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~ 864 (1051)
++.++..++.. +......+++|+|+++...+ .+.+.+|+++||||||+|||+.....+... ++.+ +.
T Consensus 411 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~---~~ 486 (530)
T PRK15064 411 EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMA-LEKY---EG 486 (530)
T ss_pred CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH-HHHC---CC
Confidence 22344556663 44567789999999985554 566899999999999999999887777443 3333 45
Q ss_pred EEEEeccChhhhhC
Q 001570 865 LGIVSTHLHGIFSL 878 (1051)
Q Consensus 865 ~vi~~TH~~el~~l 878 (1051)
|+|++|||.+++..
T Consensus 487 tvi~vsHd~~~~~~ 500 (530)
T PRK15064 487 TLIFVSHDREFVSS 500 (530)
T ss_pred EEEEEeCCHHHHHH
Confidence 99999999988653
No 322
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.61 E-value=3.8e-15 Score=184.38 Aligned_cols=150 Identities=13% Similarity=0.117 Sum_probs=113.8
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh------------------------hhcceeecCCCCChhh
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------------GICGLMVPAESASIPY 793 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l------------------------a~~G~~vpa~~~~i~~ 793 (1051)
..++++++| |++++|+||||||||||+|+|+|+... .+...++|++...++.
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 100 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH 100 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence 468999998 899999999999999999999999621 1223467766533221
Q ss_pred ------------------------HHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 794 ------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 794 ------------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
+..++..+++.+........+|++++|... +.+.+.+|+++|||||++|||+...
T Consensus 101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~ 180 (648)
T PRK10535 101 LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180 (648)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 123445566766667777899999988554 4666899999999999999999888
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeEE
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT 892 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~~ 892 (1051)
..+ ..+++.+++.|.++|++||+.+++..+++...+.++.+..
T Consensus 181 ~~l-~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~ 223 (648)
T PRK10535 181 EEV-MAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVR 223 (648)
T ss_pred HHH-HHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEe
Confidence 887 5556667667899999999999887766655556665543
No 323
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.61 E-value=2.1e-15 Score=185.33 Aligned_cols=156 Identities=12% Similarity=0.070 Sum_probs=108.2
Q ss_pred CcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCC
Q 001570 733 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAES 788 (1051)
Q Consensus 733 ~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~ 788 (1051)
++.+.+++++.+++++++ |+.++|+||||||||||+|+++|+... .+.-.||||+.
T Consensus 339 ~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 418 (588)
T PRK13657 339 DVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDA 418 (588)
T ss_pred EEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCc
Confidence 344555544679999999 899999999999999999999998721 23345888876
Q ss_pred CChh--hHH---------------HHHHhcC-----------CCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCC
Q 001570 789 ASIP--YFD---------------AIMLHMK-----------SYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEI 839 (1051)
Q Consensus 789 ~~i~--~~d---------------~i~~~~~-----------~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp 839 (1051)
..++ ..| ..+...+ .+..+..+-..+|+|++| ++.+.+.+.+|+++|||||
T Consensus 419 ~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEp 498 (588)
T PRK13657 419 GLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEA 498 (588)
T ss_pred ccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4331 111 1212222 112223334568888877 5555677999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCccccccccccee
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 890 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~ 890 (1051)
|+++|+.....+...+.+ +. .++|+|++||+.+....+++.-.+.++++
T Consensus 499 ts~LD~~t~~~i~~~l~~-~~-~~~tvIiitHr~~~~~~~D~ii~l~~G~i 547 (588)
T PRK13657 499 TSALDVETEAKVKAALDE-LM-KGRTTFIIAHRLSTVRNADRILVFDNGRV 547 (588)
T ss_pred ccCCCHHHHHHHHHHHHH-Hh-cCCEEEEEEecHHHHHhCCEEEEEECCEE
Confidence 999999888877555543 43 47999999999998877765544444443
No 324
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.8e-15 Score=186.75 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=99.0
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhh---------cceeecCCCC-Ch----hh--------
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------CGLMVPAESA-SI----PY-------- 793 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~---------~G~~vpa~~~-~i----~~-------- 793 (1051)
+++.++++++| |++++|+||||||||||||+|+|+..... ...|+|+... .+ ..
T Consensus 323 ~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~ 402 (638)
T PRK10636 323 GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLA 402 (638)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhC
Confidence 35679999998 89999999999999999999999863210 1236666421 00 01
Q ss_pred -------HHHHHHhcCCC-CCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCc
Q 001570 794 -------FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC 864 (1051)
Q Consensus 794 -------~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~ 864 (1051)
+..++..++.. +......+++|+|+++...+ ...+.+|+++||||||+|||+.....+...+.+ + +.
T Consensus 403 ~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~-~---~g 478 (638)
T PRK10636 403 PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALID-F---EG 478 (638)
T ss_pred chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHH-c---CC
Confidence 12355566764 34667789999999985554 566899999999999999999887777554444 3 34
Q ss_pred EEEEeccChhhhh
Q 001570 865 LGIVSTHLHGIFS 877 (1051)
Q Consensus 865 ~vi~~TH~~el~~ 877 (1051)
|||++|||.+++.
T Consensus 479 tvi~vSHd~~~~~ 491 (638)
T PRK10636 479 ALVVVSHDRHLLR 491 (638)
T ss_pred eEEEEeCCHHHHH
Confidence 9999999998865
No 325
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.61 E-value=3.7e-15 Score=161.14 Aligned_cols=83 Identities=10% Similarity=0.105 Sum_probs=63.2
Q ss_pred HHhcCCCC-CccCCccchhHHHHHHHHH-HHHcCCC--cEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccCh
Q 001570 798 MLHMKSYD-SPADGKSSFQVEMSEIRSI-VTATTSR--SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 873 (1051)
Q Consensus 798 ~~~~~~~d-~~~~~~stfs~e~~~~~~i-l~~a~~~--sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~ 873 (1051)
+..+++.+ ......+++|++++|...+ .+.+.+| +++||||||+|+|+.....+... +..+++.|.++|++||++
T Consensus 121 l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~-l~~~~~~g~tii~itH~~ 199 (226)
T cd03270 121 LVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIET-LKRLRDLGNTVLVVEHDE 199 (226)
T ss_pred HHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHhCCCEEEEEEeCH
Confidence 33445554 3677788999999985555 4556776 69999999999999988888544 455666799999999999
Q ss_pred hhhhCccc
Q 001570 874 GIFSLPLK 881 (1051)
Q Consensus 874 el~~l~~~ 881 (1051)
+++..+++
T Consensus 200 ~~~~~~d~ 207 (226)
T cd03270 200 DTIRAADH 207 (226)
T ss_pred HHHHhCCE
Confidence 88765544
No 326
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.61 E-value=1.5e-14 Score=178.04 Aligned_cols=155 Identities=12% Similarity=0.121 Sum_probs=107.8
Q ss_pred cccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCC
Q 001570 734 YWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA 789 (1051)
Q Consensus 734 ~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~ 789 (1051)
+.+.+++++.+++|++| |+.++|+|+||||||||+|+++|+... .+.-++|||+..
T Consensus 346 v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~ 425 (592)
T PRK10790 346 VSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPV 425 (592)
T ss_pred EEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCc
Confidence 33444445679999999 899999999999999999999998722 223458888865
Q ss_pred Chhh----------------HHHHHHhcCCC-----------CCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCC
Q 001570 790 SIPY----------------FDAIMLHMKSY-----------DSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICR 841 (1051)
Q Consensus 790 ~i~~----------------~d~i~~~~~~~-----------d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~ 841 (1051)
.++- +.+.....|.. ..+...-..+|+|++| ++.+.+.+.+|+++||||||+
T Consensus 426 lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts 505 (592)
T PRK10790 426 VLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATA 505 (592)
T ss_pred cccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 5421 11222222222 2222333568888877 555567789999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCccccccccccee
Q 001570 842 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 890 (1051)
Q Consensus 842 GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~ 890 (1051)
++|+.....+...+.+ +. .++|+|++||+.+....++....+..+++
T Consensus 506 ~LD~~t~~~i~~~l~~-~~-~~~tvIivtHr~~~l~~~D~ii~l~~G~i 552 (592)
T PRK10790 506 NIDSGTEQAIQQALAA-VR-EHTTLVVIAHRLSTIVEADTILVLHRGQA 552 (592)
T ss_pred cCCHHHHHHHHHHHHH-Hh-CCCEEEEEecchHHHHhCCEEEEEECCEE
Confidence 9999887777555543 43 36899999999988777665444444443
No 327
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.60 E-value=1.7e-14 Score=180.34 Aligned_cols=155 Identities=14% Similarity=0.116 Sum_probs=108.9
Q ss_pred CcccccC-CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhcceeecCC
Q 001570 733 PYWFDAA-EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAE 787 (1051)
Q Consensus 733 ~~~~~~~-~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G~~vpa~ 787 (1051)
++.+.+. +++++++|+|| |+.++|+||||||||||+|+++|+.. +.+.-.+|||+
T Consensus 456 nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 535 (686)
T TIGR03797 456 RVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQN 535 (686)
T ss_pred EEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccC
Confidence 4445554 34689999999 89999999999999999999999872 12334588888
Q ss_pred CCChhh----------------HHHHHHhcCCC-----------CCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCC
Q 001570 788 SASIPY----------------FDAIMLHMKSY-----------DSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEI 839 (1051)
Q Consensus 788 ~~~i~~----------------~d~i~~~~~~~-----------d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp 839 (1051)
...++- +.+.....+.. ..+..+-..+|+|++| ++.+.+.+.+|+++|||||
T Consensus 536 ~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEp 615 (686)
T TIGR03797 536 GRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEA 615 (686)
T ss_pred CccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 654311 11222222322 2222334678988888 5555677999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeE
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 891 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~ 891 (1051)
|+++|+.....+...+.+ .++|+|++||..+....+++...+.++.+.
T Consensus 616 TS~LD~~te~~i~~~L~~----~~~T~IiItHr~~~i~~~D~Iivl~~G~iv 663 (686)
T TIGR03797 616 TSALDNRTQAIVSESLER----LKVTRIVIAHRLSTIRNADRIYVLDAGRVV 663 (686)
T ss_pred ccCCCHHHHHHHHHHHHH----hCCeEEEEecChHHHHcCCEEEEEECCEEE
Confidence 999999887776444433 368999999999988877665554444443
No 328
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.60 E-value=3.5e-15 Score=183.35 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=104.2
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh--------------------hcceeecCCCCChh--h
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGLMVPAESASIP--Y 793 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la--------------------~~G~~vpa~~~~i~--~ 793 (1051)
+++++++|++| |+.++|+||||||||||+++++|+. .. +.-.+|||+...+. .
T Consensus 361 ~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI 439 (588)
T PRK11174 361 DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTL 439 (588)
T ss_pred CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCH
Confidence 45789999999 8999999999999999999999987 21 12347888764331 1
Q ss_pred H------------------------HHHHHhc--CCCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCHH
Q 001570 794 F------------------------DAIMLHM--KSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETA 846 (1051)
Q Consensus 794 ~------------------------d~i~~~~--~~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~~ 846 (1051)
. +.....+ |.+..+..+-..+|+|++| ++.+.+.+.+|+++||||||+++|+.
T Consensus 440 ~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~ 519 (588)
T PRK11174 440 RDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519 (588)
T ss_pred HHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 1 1112222 2222333444578888887 55556779999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccc
Q 001570 847 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 888 (1051)
Q Consensus 847 ~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~ 888 (1051)
....+...+. .+. .+.|+|++||.++....++..-.+.++
T Consensus 520 te~~i~~~l~-~~~-~~~TvIiItHrl~~i~~aD~Iivl~~G 559 (588)
T PRK11174 520 SEQLVMQALN-AAS-RRQTTLMVTHQLEDLAQWDQIWVMQDG 559 (588)
T ss_pred HHHHHHHHHH-HHh-CCCEEEEEecChHHHHhCCEEEEEeCC
Confidence 8888865554 343 478999999999887776654444333
No 329
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.9e-14 Score=164.22 Aligned_cols=163 Identities=16% Similarity=0.109 Sum_probs=121.7
Q ss_pred eeecccCCcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhH-------------------Hhhhcce
Q 001570 726 LKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS-------------------LLGICGL 782 (1051)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~-------------------~la~~G~ 782 (1051)
+.+++++ +.+..++.|++++|| |+-++|+|+|||||||++|++..+. -+.+..+
T Consensus 352 I~F~dV~---f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 352 IEFDDVH---FSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred EEEEeeE---EEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhee
Confidence 5555443 445566679999999 8999999999999999999999886 1445667
Q ss_pred eecCCCCChhh-----------------HHHHHHhcCCCCCccCCc---c--------chhHHHHH-HHHHHHHcCCCcE
Q 001570 783 MVPAESASIPY-----------------FDAIMLHMKSYDSPADGK---S--------SFQVEMSE-IRSIVTATTSRSL 833 (1051)
Q Consensus 783 ~vpa~~~~i~~-----------------~d~i~~~~~~~d~~~~~~---s--------tfs~e~~~-~~~il~~a~~~sL 833 (1051)
+|||+...+.- +-++..+.++.|.+.+.. + .+|+|.+| ++.+.+.+.+|++
T Consensus 429 ~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~I 508 (591)
T KOG0057|consen 429 VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI 508 (591)
T ss_pred EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCe
Confidence 99999765421 223445556655443322 1 34555555 6666777999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeEEE
Q 001570 834 VLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTE 893 (1051)
Q Consensus 834 lLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~~~ 893 (1051)
+++|||||.||...-..+...+.. ...+.|+|++-|+++++.-++....+.++.+...
T Consensus 509 l~~DEaTS~LD~~TE~~i~~~i~~--~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~ 566 (591)
T KOG0057|consen 509 LLLDEATSALDSETEREILDMIMD--VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEY 566 (591)
T ss_pred EEecCcccccchhhHHHHHHHHHH--hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEe
Confidence 999999999999998888777777 3458999999999999988887776667766544
No 330
>PLN03073 ABC transporter F family; Provisional
Probab=99.60 E-value=3.5e-15 Score=185.20 Aligned_cols=138 Identities=13% Similarity=0.124 Sum_probs=99.6
Q ss_pred cccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhh---------cceeecCCCC-Ch----------
Q 001570 736 FDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI---------CGLMVPAESA-SI---------- 791 (1051)
Q Consensus 736 ~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~---------~G~~vpa~~~-~i---------- 791 (1051)
+.+.++..+++++|| |++++|+||||||||||||+|+|+..... ...|+|+... .+
T Consensus 516 ~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~ 595 (718)
T PLN03073 516 FGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYM 595 (718)
T ss_pred EEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHH
Confidence 344445579999998 89999999999999999999999863211 1225665431 00
Q ss_pred ---------hhHHHHHHhcCCCC-CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Q 001570 792 ---------PYFDAIMLHMKSYD-SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 860 (1051)
Q Consensus 792 ---------~~~d~i~~~~~~~d-~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~ 860 (1051)
..+..++..+++.+ ......+.+|+|+++... +...+.+|+++||||||+|||+.....+...+ .
T Consensus 596 ~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L----~ 671 (718)
T PLN03073 596 MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL----V 671 (718)
T ss_pred HHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH----H
Confidence 01233556667763 456678899999998554 45668999999999999999998766664333 3
Q ss_pred cCCcEEEEeccChhhhh
Q 001570 861 NIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 861 ~~g~~vi~~TH~~el~~ 877 (1051)
+.+.++|++||+.+++.
T Consensus 672 ~~~gtvIivSHd~~~i~ 688 (718)
T PLN03073 672 LFQGGVLMVSHDEHLIS 688 (718)
T ss_pred HcCCEEEEEECCHHHHH
Confidence 32349999999998875
No 331
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.60 E-value=1.9e-14 Score=176.64 Aligned_cols=154 Identities=12% Similarity=0.079 Sum_probs=106.6
Q ss_pred cccccCC-CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCC
Q 001570 734 YWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAES 788 (1051)
Q Consensus 734 ~~~~~~~-~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~ 788 (1051)
+.+.+++ ++++++++++ |+.++|+||||||||||+|+|+|+... .+.-.++||+.
T Consensus 347 vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~ 426 (582)
T PRK11176 347 VTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNV 426 (582)
T ss_pred EEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCc
Confidence 3455554 3679999999 899999999999999999999998721 22335788875
Q ss_pred CChhh--HHHH----------------HHhcCCC-----------CCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcC
Q 001570 789 ASIPY--FDAI----------------MLHMKSY-----------DSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDE 838 (1051)
Q Consensus 789 ~~i~~--~d~i----------------~~~~~~~-----------d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDE 838 (1051)
..++- .+++ +...+.. ..+..+-..+|+|++| ++.+.+...+|+++||||
T Consensus 427 ~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDE 506 (582)
T PRK11176 427 HLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDE 506 (582)
T ss_pred eeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 43321 1111 1111211 1122223568888887 555567799999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccce
Q 001570 839 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 889 (1051)
Q Consensus 839 p~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~ 889 (1051)
||+++|+.....+...+.+ +. .++|+|++||+.+....++..-.+..++
T Consensus 507 ptsaLD~~t~~~i~~~l~~-~~-~~~tvI~VtHr~~~~~~~D~Ii~l~~g~ 555 (582)
T PRK11176 507 ATSALDTESERAIQAALDE-LQ-KNRTSLVIAHRLSTIEKADEILVVEDGE 555 (582)
T ss_pred ccccCCHHHHHHHHHHHHH-Hh-CCCEEEEEecchHHHHhCCEEEEEECCE
Confidence 9999999888887555544 43 4689999999998887776554444433
No 332
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.60 E-value=2.8e-15 Score=188.09 Aligned_cols=155 Identities=14% Similarity=0.132 Sum_probs=108.5
Q ss_pred CcccccCC-CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhcceeecCC
Q 001570 733 PYWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAE 787 (1051)
Q Consensus 733 ~~~~~~~~-~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G~~vpa~ 787 (1051)
++.+.+++ ++.+++|++| |+.++|+||||||||||+|+|+|+.. +.+..++|||+
T Consensus 482 ~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 561 (710)
T TIGR03796 482 NITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQD 561 (710)
T ss_pred EEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecC
Confidence 44455553 4679999999 89999999999999999999999872 12234588887
Q ss_pred CCChh--hHHH---------------HHHhc-----------CCCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcC
Q 001570 788 SASIP--YFDA---------------IMLHM-----------KSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDE 838 (1051)
Q Consensus 788 ~~~i~--~~d~---------------i~~~~-----------~~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDE 838 (1051)
...++ ..++ .+... |.+..+..+-..+|+|++| ++.+.+.+.+|+++||||
T Consensus 562 ~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDE 641 (710)
T TIGR03796 562 IFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDE 641 (710)
T ss_pred ChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEEC
Confidence 64331 1111 11112 2222233334678888888 555567799999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeE
Q 001570 839 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 891 (1051)
Q Consensus 839 p~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~ 891 (1051)
||++||+.....+...+. +.++|+|++||..+....+++.-.+.++.+.
T Consensus 642 ptS~LD~~te~~i~~~l~----~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 642 ATSALDPETEKIIDDNLR----RRGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred ccccCCHHHHHHHHHHHH----hcCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 999999988776655443 3589999999999988777665444444443
No 333
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.60 E-value=3.5e-15 Score=182.92 Aligned_cols=153 Identities=11% Similarity=0.063 Sum_probs=104.9
Q ss_pred cccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCC
Q 001570 734 YWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESA 789 (1051)
Q Consensus 734 ~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~ 789 (1051)
+.+.+++++.++++++| |+.++|+||||||||||+++|+|+... .+.-.++|++..
T Consensus 340 v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 419 (585)
T TIGR01192 340 ITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAG 419 (585)
T ss_pred EEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCc
Confidence 34445555678999999 899999999999999999999998621 122347777753
Q ss_pred Chh--hHHHH---------------HHhc-----------CCCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCC
Q 001570 790 SIP--YFDAI---------------MLHM-----------KSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 790 ~i~--~~d~i---------------~~~~-----------~~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~ 840 (1051)
.++ ..+++ .... |....+..+-..+|+|++| ++.+.+.+.+|+++||||||
T Consensus 420 lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpt 499 (585)
T TIGR01192 420 LFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEAT 499 (585)
T ss_pred cCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 321 11111 1111 1122233444568888887 55556779999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccc
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 888 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~ 888 (1051)
+|+|+.....+...+ +.+. .+.|+|++||+.+....+++...+.++
T Consensus 500 s~LD~~~~~~i~~~l-~~~~-~~~tvI~isH~~~~~~~~d~i~~l~~G 545 (585)
T TIGR01192 500 SALDVETEARVKNAI-DALR-KNRTTFIIAHRLSTVRNADLVLFLDQG 545 (585)
T ss_pred cCCCHHHHHHHHHHH-HHHh-CCCEEEEEEcChHHHHcCCEEEEEECC
Confidence 999998888884444 4444 489999999999887765544433333
No 334
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.9e-14 Score=168.24 Aligned_cols=158 Identities=16% Similarity=0.088 Sum_probs=110.3
Q ss_pred CcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhcceeecCCC
Q 001570 733 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAES 788 (1051)
Q Consensus 733 ~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G~~vpa~~ 788 (1051)
++.+.+++++++++|++| |+.++|+|+||||||||++.|+|+.. ..+.-++||+++
T Consensus 325 ~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p 404 (559)
T COG4988 325 NLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404 (559)
T ss_pred ceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCC
Confidence 455666777799999999 89999999999999999999999872 113344777765
Q ss_pred CChhh-----------------HHHHHHhcCC----------CCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCC
Q 001570 789 ASIPY-----------------FDAIMLHMKS----------YDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 789 ~~i~~-----------------~d~i~~~~~~----------~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~ 840 (1051)
-.++- +.++..+.+. +..+..+-+.+|+|+.| ++.+.+...+++++|+||||
T Consensus 405 ~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpT 484 (559)
T COG4988 405 YLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPT 484 (559)
T ss_pred ccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 43320 1122333322 22233444567888776 55567778999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeEE
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGT 892 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~~ 892 (1051)
+++|.+.-..+ ...+..+.+ +.|+|++||.+..+..++....+.++....
T Consensus 485 A~LD~etE~~i-~~~l~~l~~-~ktvl~itHrl~~~~~~D~I~vld~G~l~~ 534 (559)
T COG4988 485 AHLDAETEQII-LQALQELAK-QKTVLVITHRLEDAADADRIVVLDNGRLVE 534 (559)
T ss_pred cCCCHhHHHHH-HHHHHHHHh-CCeEEEEEcChHHHhcCCEEEEecCCceec
Confidence 99999666555 444455554 489999999988877776655555555443
No 335
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.59 E-value=5.7e-15 Score=156.31 Aligned_cols=124 Identities=16% Similarity=0.145 Sum_probs=88.0
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhh--------------------------hcceeecCCCCCh------hhHHHHH
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------------ICGLMVPAESASI------PYFDAIM 798 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la--------------------------~~G~~vpa~~~~i------~~~d~i~ 798 (1051)
| +++|+||||||||||+++|+++.-.. ....++|++.... ..+++++
T Consensus 23 g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~l 101 (197)
T cd03278 23 G-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEII 101 (197)
T ss_pred C-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHHH
Confidence 6 99999999999999999999885110 0112556544321 2234455
Q ss_pred HhcCCCCCccCCccchhHHHHHHHHHHHH-c----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccCh
Q 001570 799 LHMKSYDSPADGKSSFQVEMSEIRSIVTA-T----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 873 (1051)
Q Consensus 799 ~~~~~~d~~~~~~stfs~e~~~~~~il~~-a----~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~ 873 (1051)
.. .+........+|+|+++...+... + .+|+++|||||++|+|+.....+ ..+++.+.+ +.++|++||++
T Consensus 102 ~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l-~~~l~~~~~-~~tiIiitH~~ 176 (197)
T cd03278 102 EA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERF-ARLLKEFSK-ETQFIVITHRK 176 (197)
T ss_pred hC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHH-HHHHHHhcc-CCEEEEEECCH
Confidence 54 344556678899999986655433 2 56799999999999999888887 455555654 68999999999
Q ss_pred hhhhCcc
Q 001570 874 GIFSLPL 880 (1051)
Q Consensus 874 el~~l~~ 880 (1051)
++++.++
T Consensus 177 ~~~~~~d 183 (197)
T cd03278 177 GTMEAAD 183 (197)
T ss_pred HHHhhcc
Confidence 8866543
No 336
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.59 E-value=6.5e-15 Score=179.59 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=107.4
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCChh-----
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP----- 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i~----- 792 (1051)
+++++++|| |++++|+||||||||||+++|+|+... ...-.+||++...+.
T Consensus 355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 434 (555)
T TIGR01194 355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGP 434 (555)
T ss_pred CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhc
Confidence 369999999 899999999999999999999998621 112236666543221
Q ss_pred ---------hHHHHHHhcCCCCCccC---C---ccchhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHH
Q 001570 793 ---------YFDAIMLHMKSYDSPAD---G---KSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSII 856 (1051)
Q Consensus 793 ---------~~d~i~~~~~~~d~~~~---~---~stfs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~il 856 (1051)
.+.+.+...+..+.+.. + ...+|+|++|. +.+.+.+.+|+++||||||+++|+.....+...++
T Consensus 435 n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~ 514 (555)
T TIGR01194 435 DEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELL 514 (555)
T ss_pred ccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 12234555565544321 2 25788888874 55567799999999999999999988888877777
Q ss_pred HHHHcCCcEEEEeccChhhhhCcccccccccce
Q 001570 857 ETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 889 (1051)
Q Consensus 857 e~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~ 889 (1051)
+.++..+.|+|++||+.+..+.++....+.++.
T Consensus 515 ~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~ 547 (555)
T TIGR01194 515 PDLKRQGKTIIIISHDDQYFELADQIIKLAAGC 547 (555)
T ss_pred HHHHhCCCEEEEEeccHHHHHhCCEEEEEECCE
Confidence 666666899999999988777666544444433
No 337
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.59 E-value=4.1e-15 Score=181.22 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=98.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh-------h--cceeecCCCC-Ch---hh----------
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------I--CGLMVPAESA-SI---PY---------- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la-------~--~G~~vpa~~~-~i---~~---------- 793 (1051)
++.++++++| |++++|+||||||||||+|+|+|+.... . .-.|+|++.. .. ..
T Consensus 334 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~ 413 (552)
T TIGR03719 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDI 413 (552)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccc
Confidence 4579999999 8999999999999999999999986321 0 1236776531 11 11
Q ss_pred ---------HHHHHHhcCCCC-CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC
Q 001570 794 ---------FDAIMLHMKSYD-SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 862 (1051)
Q Consensus 794 ---------~d~i~~~~~~~d-~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~ 862 (1051)
...++..+++.+ ...+..+++|+|+++... +.+.+.+|+++||||||+|||+.....+. .++..+
T Consensus 414 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~--- 489 (552)
T TIGR03719 414 IQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALE-EALLEF--- 489 (552)
T ss_pred cccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHC---
Confidence 123455667653 356677899999998554 46669999999999999999998877774 444433
Q ss_pred CcEEEEeccChhhhh
Q 001570 863 GCLGIVSTHLHGIFS 877 (1051)
Q Consensus 863 g~~vi~~TH~~el~~ 877 (1051)
+.++|++||+.+++.
T Consensus 490 ~~~viivsHd~~~~~ 504 (552)
T TIGR03719 490 AGCAVVISHDRWFLD 504 (552)
T ss_pred CCeEEEEeCCHHHHH
Confidence 238999999998765
No 338
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.59 E-value=4.2e-15 Score=181.98 Aligned_cols=155 Identities=15% Similarity=0.067 Sum_probs=108.6
Q ss_pred CcccccCC-CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCC
Q 001570 733 PYWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAE 787 (1051)
Q Consensus 733 ~~~~~~~~-~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~ 787 (1051)
++.+.+++ ++.+++|++| |+.++|+||||||||||+|+++|+... .+.-.+|||+
T Consensus 343 ~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 422 (574)
T PRK11160 343 NVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQR 422 (574)
T ss_pred EEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEccc
Confidence 34455544 3579999999 899999999999999999999998621 1223478887
Q ss_pred CCChh-----------------hHHHHHHhcCCCCCcc----------CCccchhHHHHH-HHHHHHHcCCCcEEEEcCC
Q 001570 788 SASIP-----------------YFDAIMLHMKSYDSPA----------DGKSSFQVEMSE-IRSIVTATTSRSLVLIDEI 839 (1051)
Q Consensus 788 ~~~i~-----------------~~d~i~~~~~~~d~~~----------~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp 839 (1051)
...++ .+.+.+...+..+.+. .+-..+|+|++| ++.+.+.+.+|+++|||||
T Consensus 423 ~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ 502 (574)
T PRK11160 423 VHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEP 502 (574)
T ss_pred chhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 64331 1223334444443322 234568888887 4555667999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccce
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 889 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~ 889 (1051)
|+++|+.....+...+.+ +. .++|+|++||.++....+++...+.++.
T Consensus 503 ts~lD~~t~~~i~~~l~~-~~-~~~tviiitHr~~~~~~~d~i~~l~~G~ 550 (574)
T PRK11160 503 TEGLDAETERQILELLAE-HA-QNKTVLMITHRLTGLEQFDRICVMDNGQ 550 (574)
T ss_pred cccCCHHHHHHHHHHHHH-Hc-CCCEEEEEecChhHHHhCCEEEEEeCCe
Confidence 999999888877555544 43 4789999999998877665544443433
No 339
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.59 E-value=5e-15 Score=181.38 Aligned_cols=154 Identities=11% Similarity=0.085 Sum_probs=106.6
Q ss_pred cccccCC-CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCC
Q 001570 734 YWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAES 788 (1051)
Q Consensus 734 ~~~~~~~-~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~ 788 (1051)
+.+.+++ ++++++++++ |+.++|+|+||||||||+|+++|+... .+.-+|+||++
T Consensus 336 v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~ 415 (571)
T TIGR02203 336 VTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDV 415 (571)
T ss_pred EEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCc
Confidence 3344443 4679999999 899999999999999999999998721 12345788875
Q ss_pred CChhh------------------HHHHHHhcCCC-----------CCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcC
Q 001570 789 ASIPY------------------FDAIMLHMKSY-----------DSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDE 838 (1051)
Q Consensus 789 ~~i~~------------------~d~i~~~~~~~-----------d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDE 838 (1051)
..+.- +.+++...+.. ..+...-..+|+|++| ++.+.+.+.+|+++||||
T Consensus 416 ~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDE 495 (571)
T TIGR02203 416 VLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDE 495 (571)
T ss_pred ccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 43211 11222222221 1222333568888887 555567799999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccce
Q 001570 839 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 889 (1051)
Q Consensus 839 p~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~ 889 (1051)
||+++|+.....+...+.+ +. .++|+|++||+.+....++..-.+..+.
T Consensus 496 pts~LD~~~~~~i~~~L~~-~~-~~~tiIiitH~~~~~~~~D~ii~l~~g~ 544 (571)
T TIGR02203 496 ATSALDNESERLVQAALER-LM-QGRTTLVIAHRLSTIEKADRIVVMDDGR 544 (571)
T ss_pred ccccCCHHHHHHHHHHHHH-Hh-CCCEEEEEehhhHHHHhCCEEEEEeCCE
Confidence 9999999998888555543 43 4689999999998887776554444433
No 340
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.59 E-value=4.6e-15 Score=180.87 Aligned_cols=133 Identities=14% Similarity=0.140 Sum_probs=98.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh-------h--cceeecCCC-CCh---hhH---------
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------I--CGLMVPAES-ASI---PYF--------- 794 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la-------~--~G~~vpa~~-~~i---~~~--------- 794 (1051)
++.++++++| |++++|+||||||||||+|+|+|+.... . ...|+|++. ... ...
T Consensus 336 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~ 415 (556)
T PRK11819 336 DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDI 415 (556)
T ss_pred CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhccc
Confidence 4579999999 8999999999999999999999986321 1 123677753 111 111
Q ss_pred ----------HHHHHhcCCCC-CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC
Q 001570 795 ----------DAIMLHMKSYD-SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 862 (1051)
Q Consensus 795 ----------d~i~~~~~~~d-~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~ 862 (1051)
..++..+++.+ ...+..+++|+|+++... +.+.+.+|+++||||||+|||+.....+. .++..+ .
T Consensus 416 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~--~ 492 (556)
T PRK11819 416 IKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALE-EALLEF--P 492 (556)
T ss_pred ccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH-HHHHhC--C
Confidence 23455566643 356678899999998554 46668999999999999999998877774 444444 2
Q ss_pred CcEEEEeccChhhhh
Q 001570 863 GCLGIVSTHLHGIFS 877 (1051)
Q Consensus 863 g~~vi~~TH~~el~~ 877 (1051)
+ ++|++||+.+++.
T Consensus 493 ~-tvi~vtHd~~~~~ 506 (556)
T PRK11819 493 G-CAVVISHDRWFLD 506 (556)
T ss_pred C-eEEEEECCHHHHH
Confidence 4 7999999998765
No 341
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.59 E-value=6.3e-15 Score=182.22 Aligned_cols=142 Identities=14% Similarity=0.187 Sum_probs=95.2
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhh-----cc----eeecCCCC--C----hh--------
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-----CG----LMVPAESA--S----IP-------- 792 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~-----~G----~~vpa~~~--~----i~-------- 792 (1051)
+++.+++++|| |++++|+||||||||||||+|+|+..... .| .++++... . +.
T Consensus 14 ~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~ 93 (635)
T PRK11147 14 SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEE 93 (635)
T ss_pred CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHH
Confidence 34679999999 89999999999999999999999863211 01 12332110 0 00
Q ss_pred --------------------------------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHH
Q 001570 793 --------------------------------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTA 827 (1051)
Q Consensus 793 --------------------------------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~ 827 (1051)
.+..++..+|+. ..+..+++|+|+++...+ ...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL 171 (635)
T PRK11147 94 QAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRAL 171 (635)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHH
Confidence 011223334443 255678999999885554 566
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccc
Q 001570 828 TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAY 887 (1051)
Q Consensus 828 a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~ 887 (1051)
+.+|+++||||||+|||+.....+ . +.|.+.+.+||++|||.+++. .++....+.+
T Consensus 172 ~~~P~lLLLDEPt~~LD~~~~~~L-~---~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~ 228 (635)
T PRK11147 172 VSNPDVLLLDEPTNHLDIETIEWL-E---GFLKTFQGSIIFISHDRSFIRNMATRIVDLDR 228 (635)
T ss_pred hcCCCEEEEcCCCCccCHHHHHHH-H---HHHHhCCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 899999999999999999776555 3 333333469999999998865 3443333333
No 342
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.58 E-value=1.1e-14 Score=157.05 Aligned_cols=209 Identities=14% Similarity=0.095 Sum_probs=135.3
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCC--------CChhhHHHHHHhcCCCC-Ccc
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAES--------ASIPYFDAIMLHMKSYD-SPA 808 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~--------~~i~~~d~i~~~~~~~d-~~~ 808 (1051)
..++++||| |++++|+|.|||||||+-|+|.++.-... |....... .....+.+++..+|... ...
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ 104 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLY 104 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhh
Confidence 478999999 89999999999999999999999875332 33333221 11233556778888665 456
Q ss_pred CCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCcEEEEeccChhhhhCcccccccc
Q 001570 809 DGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFSLPLKIKNAA 886 (1051)
Q Consensus 809 ~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~-~~g~~vi~~TH~~el~~l~~~~~~i~ 886 (1051)
+....||+|++|... +.+.+.+|+++++|||+|.||...++.+ ..++..++ +.|.+.+|+|||...+....+ ++.
T Consensus 105 ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqI-lnLL~dlq~~~~lt~lFIsHDL~vv~~isd--ri~ 181 (268)
T COG4608 105 RYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQI-LNLLKDLQEELGLTYLFISHDLSVVRYISD--RIA 181 (268)
T ss_pred cCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHH-HHHHHHHHHHhCCeEEEEEEEHHhhhhhcc--cEE
Confidence 778899999988544 4667999999999999999999998888 45555555 569999999999999875443 444
Q ss_pred cceeEEEEeCCceeeeeeeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHhcccchhhccccCCCCcccCcceeEEEe
Q 001570 887 YKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVNCVMIAAREQPPPSIIGASCVYVML 966 (1051)
Q Consensus 887 ~~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~vi~rA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 966 (1051)
.+..+..+..+.....|. .+...|.-......-.|..-.++-+ .+...++.|.|.....+|.+.-.
T Consensus 182 VMy~G~iVE~g~~~~~~~----~p~HpYTk~Ll~a~p~~~p~~~~~~----------~~~~~ge~p~~~~~p~gC~f~~R 247 (268)
T COG4608 182 VMYLGKIVEIGPTEEVFS----NPLHPYTKALLSAVPVPDPRLRRKR----------RIPLEGEVPSPINPPSGCRFHPR 247 (268)
T ss_pred EEecCceeEecCHHHHhh----CCCCHHHHHHHHhCCccchhhhhhh----------hhhhccCCCCCCcCCcCCcccCC
Confidence 444443333343333332 2334554333222221111111111 11223456666666777776655
Q ss_pred cC
Q 001570 967 RP 968 (1051)
Q Consensus 967 ~~ 968 (1051)
-|
T Consensus 248 Cp 249 (268)
T COG4608 248 CP 249 (268)
T ss_pred cc
Confidence 44
No 343
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.58 E-value=5.6e-15 Score=184.90 Aligned_cols=154 Identities=14% Similarity=0.067 Sum_probs=107.4
Q ss_pred CcccccCC-CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCC
Q 001570 733 PYWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAE 787 (1051)
Q Consensus 733 ~~~~~~~~-~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~ 787 (1051)
++.+.|++ ++++++|++| |+.++|+||||||||||+|+++|+... .+...+|||+
T Consensus 468 ~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~ 547 (694)
T TIGR03375 468 NVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQD 547 (694)
T ss_pred EEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCC
Confidence 34455543 4579999999 899999999999999999999998621 2234578887
Q ss_pred CCChh--hHH---------------HHHHhcC-----------CCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcC
Q 001570 788 SASIP--YFD---------------AIMLHMK-----------SYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDE 838 (1051)
Q Consensus 788 ~~~i~--~~d---------------~i~~~~~-----------~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDE 838 (1051)
...++ ..+ +.....+ .+..+..+-..+|+|++| ++.+.+.+.+|+++||||
T Consensus 548 ~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE 627 (694)
T TIGR03375 548 PRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDE 627 (694)
T ss_pred hhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 54331 111 1122222 222223334578998888 455566799999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccc
Q 001570 839 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYK 888 (1051)
Q Consensus 839 p~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~ 888 (1051)
||+++|+.....+...+.+ +. .++|+|++||.++....+++...+.++
T Consensus 628 ~Ts~LD~~te~~i~~~l~~-~~-~~~T~iiItHrl~~~~~~D~iivl~~G 675 (694)
T TIGR03375 628 PTSAMDNRSEERFKDRLKR-WL-AGKTLVLVTHRTSLLDLVDRIIVMDNG 675 (694)
T ss_pred CCCCCCHHHHHHHHHHHHH-Hh-CCCEEEEEecCHHHHHhCCEEEEEeCC
Confidence 9999999888888555544 43 378999999999987776654444333
No 344
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.58 E-value=2.8e-15 Score=190.69 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=123.4
Q ss_pred eeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------------------hhcceeecCCCCChhh-----
Q 001570 744 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------------------GICGLMVPAESASIPY----- 793 (1051)
Q Consensus 744 vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------------------a~~G~~vpa~~~~i~~----- 793 (1051)
+.+++++ |++.+++|||||||||++|++.|.... .+.-+|.||..+..+.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE 659 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE 659 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence 7889998 899999999999999999999998621 1223377877543211
Q ss_pred -------------------HHHHHHhcCCCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHH
Q 001570 794 -------------------FDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAG 853 (1051)
Q Consensus 794 -------------------~d~i~~~~~~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~ 853 (1051)
++..+..++..+......+++|+|+++ +..+++.+.+|++|+||||++|+||..+..+ |
T Consensus 660 hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~l-W 738 (885)
T KOG0059|consen 660 HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHL-W 738 (885)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHH-H
Confidence 345566678888888889999999998 6667888999999999999999999777777 8
Q ss_pred HHHHHHHcCCcEEEEeccChhhhh-CcccccccccceeEEEEeCCcee
Q 001570 854 SIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGTEYLDGQTV 900 (1051)
Q Consensus 854 ~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~~~~~~~~~~~~l~ 900 (1051)
.++..+.+.|..+|++||.+|+++ ++++...+.++++.......+++
T Consensus 739 ~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 739 DIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 888888887779999999999997 56666677777777654443333
No 345
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.58 E-value=7.2e-15 Score=182.09 Aligned_cols=141 Identities=13% Similarity=0.127 Sum_probs=100.0
Q ss_pred cccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------hcceeecCCCCChh--h-------
Q 001570 736 FDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG---------ICGLMVPAESASIP--Y------- 793 (1051)
Q Consensus 736 ~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la---------~~G~~vpa~~~~i~--~------- 793 (1051)
+.+.+++.++++++| |++++|+||||||||||+|+|+|+.... ....++||+...++ .
T Consensus 459 ~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~ 538 (659)
T TIGR00954 459 LVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYP 538 (659)
T ss_pred EECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcC
Confidence 334445689999999 8999999999999999999999986321 11247777642211 1
Q ss_pred ---------------HHHHHHhcCCCCCccC---------CccchhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 794 ---------------FDAIMLHMKSYDSPAD---------GKSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 794 ---------------~d~i~~~~~~~d~~~~---------~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
+.+++..+++.+.... ....+|+|++|. +.+.+.+.+|+++||||||+|+|+...
T Consensus 539 ~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~ 618 (659)
T TIGR00954 539 DSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVE 618 (659)
T ss_pred CChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 1233444454433222 236799998885 445667899999999999999999876
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccChhhhhCcc
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 880 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~ 880 (1051)
..+. +.+++.|.|+|++||+.++...++
T Consensus 619 ~~l~----~~l~~~~~tvI~isH~~~~~~~~d 646 (659)
T TIGR00954 619 GYMY----RLCREFGITLFSVSHRKSLWKYHE 646 (659)
T ss_pred HHHH----HHHHHcCCEEEEEeCchHHHHhCC
Confidence 6553 334445899999999999876554
No 346
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.57 E-value=1e-14 Score=171.13 Aligned_cols=139 Identities=12% Similarity=0.083 Sum_probs=107.9
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh--------h--------------cceeecCCCCC-h--
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------I--------------CGLMVPAESAS-I-- 791 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la--------~--------------~G~~vpa~~~~-i-- 791 (1051)
...+++++|| |++++|+|++||||||+.|+|+|+.... + .-.+|+|++.. +
T Consensus 303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnP 382 (539)
T COG1123 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNP 382 (539)
T ss_pred ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCc
Confidence 3578999999 9999999999999999999999998321 0 01133333210 0
Q ss_pred ------------------------hhHHHHHHhcCCCCC-ccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCCH
Q 001570 792 ------------------------PYFDAIMLHMKSYDS-PADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTET 845 (1051)
Q Consensus 792 ------------------------~~~d~i~~~~~~~d~-~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD~ 845 (1051)
..++.++..+++... +.+....||+|++|. +.+.+.+.+|++||+|||++.||+
T Consensus 383 r~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDv 462 (539)
T COG1123 383 RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDV 462 (539)
T ss_pred cccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCH
Confidence 014556777787764 677888999999984 555777999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCc
Q 001570 846 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 879 (1051)
Q Consensus 846 ~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~ 879 (1051)
..+..+...+.+.-.+.|.|.||+|||+..++..
T Consensus 463 svqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i 496 (539)
T COG1123 463 SVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYI 496 (539)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhh
Confidence 9999997777776667899999999999988643
No 347
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.57 E-value=6.9e-15 Score=181.90 Aligned_cols=134 Identities=13% Similarity=0.137 Sum_probs=95.1
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------hh--cceeecCCCC-Ch---hhHH-------
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------GI--CGLMVPAESA-SI---PYFD------- 795 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------a~--~G~~vpa~~~-~i---~~~d------- 795 (1051)
+++.++++++| |++++|+||||||||||||+|+|+... .. ...|+++... .. ...+
T Consensus 330 ~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~ 409 (635)
T PRK11147 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQ 409 (635)
T ss_pred CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcc
Confidence 34679999998 899999999999999999999998621 11 1236666431 11 1111
Q ss_pred ------------HHHHhcCCC-CCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHc
Q 001570 796 ------------AIMLHMKSY-DSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN 861 (1051)
Q Consensus 796 ------------~i~~~~~~~-d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~ 861 (1051)
.++..++.. +......+++|+|+++... +...+.+|+++||||||+|||+.....+. .++ .+
T Consensus 410 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~-~~l---~~ 485 (635)
T PRK11147 410 EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLE-ELL---DS 485 (635)
T ss_pred cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH-HHH---Hh
Confidence 233344543 3345667899999998555 45668899999999999999998766553 333 33
Q ss_pred CCcEEEEeccChhhhh
Q 001570 862 IGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 862 ~g~~vi~~TH~~el~~ 877 (1051)
.+.|+|++|||.+++.
T Consensus 486 ~~~tvi~vSHd~~~~~ 501 (635)
T PRK11147 486 YQGTVLLVSHDRQFVD 501 (635)
T ss_pred CCCeEEEEECCHHHHH
Confidence 3569999999998764
No 348
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.57 E-value=7e-15 Score=175.38 Aligned_cols=134 Identities=18% Similarity=0.125 Sum_probs=97.7
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh------h---cceeecCCCCChh---h----------
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG------I---CGLMVPAESASIP---Y---------- 793 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la------~---~G~~vpa~~~~i~---~---------- 793 (1051)
+++.+++++++ |+.++|+|+||+|||||||+|+|..... . --.+++|+....+ .
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~ 93 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGE 93 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHH
Confidence 67889999998 8999999999999999999999987211 1 1225565543221 1
Q ss_pred -----------------------------------------HHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCC
Q 001570 794 -----------------------------------------FDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSR 831 (1051)
Q Consensus 794 -----------------------------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~ 831 (1051)
...++..+|..+. ....+++|+|.+....+ .....+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~p 172 (530)
T COG0488 94 LRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEP 172 (530)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCC
Confidence 1123334455555 77889999999875554 4458999
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 832 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 832 sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
+++||||||++||... ...+-++|.+...|+|+||||-++.+-
T Consensus 173 DlLLLDEPTNHLD~~~----i~WLe~~L~~~~gtviiVSHDR~FLd~ 215 (530)
T COG0488 173 DLLLLDEPTNHLDLES----IEWLEDYLKRYPGTVIVVSHDRYFLDN 215 (530)
T ss_pred CEEEEcCCCcccCHHH----HHHHHHHHHhCCCcEEEEeCCHHHHHH
Confidence 9999999999999954 245566666544499999999998753
No 349
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.57 E-value=7.2e-15 Score=184.35 Aligned_cols=155 Identities=16% Similarity=0.124 Sum_probs=108.1
Q ss_pred CcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhcceeecCCC
Q 001570 733 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAES 788 (1051)
Q Consensus 733 ~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G~~vpa~~ 788 (1051)
++.+.+.+++.+++|++| |+.++|+||||||||||+|+++|+.. +.+.-.+|||+.
T Consensus 478 ~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~ 557 (708)
T TIGR01193 478 DVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEP 557 (708)
T ss_pred EEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCc
Confidence 344555555789999999 89999999999999999999999862 122334788875
Q ss_pred CChhh--HHH----------------HHHhcCC-----------CCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcC
Q 001570 789 ASIPY--FDA----------------IMLHMKS-----------YDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDE 838 (1051)
Q Consensus 789 ~~i~~--~d~----------------i~~~~~~-----------~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDE 838 (1051)
..++- .|+ .....+. +..+..+-..+|+|++| ++.+.+.+.+|+++||||
T Consensus 558 ~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE 637 (708)
T TIGR01193 558 YIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDE 637 (708)
T ss_pred eehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 43311 111 1111122 12223344578888888 455566789999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCccccccccccee
Q 001570 839 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 890 (1051)
Q Consensus 839 p~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~ 890 (1051)
||+++|+.....+...+.+ + .++|+|++||..+....++..-.+.++.+
T Consensus 638 ~Ts~LD~~te~~i~~~L~~-~--~~~T~IiitHr~~~~~~~D~i~~l~~G~i 686 (708)
T TIGR01193 638 STSNLDTITEKKIVNNLLN-L--QDKTIIFVAHRLSVAKQSDKIIVLDHGKI 686 (708)
T ss_pred ccccCCHHHHHHHHHHHHH-h--cCCEEEEEecchHHHHcCCEEEEEECCEE
Confidence 9999999887777555554 3 47899999999998877665544444433
No 350
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.57 E-value=7.6e-15 Score=183.84 Aligned_cols=155 Identities=12% Similarity=0.061 Sum_probs=106.6
Q ss_pred CcccccCC--CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecC
Q 001570 733 PYWFDAAE--GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPA 786 (1051)
Q Consensus 733 ~~~~~~~~--~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa 786 (1051)
++.+.+++ ++++++|+|| |+.++|+||||||||||+|+|+|+... .+.-.+|||
T Consensus 483 nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q 562 (711)
T TIGR00958 483 DVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQ 562 (711)
T ss_pred EEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEec
Confidence 34455543 4689999999 899999999999999999999998721 223457888
Q ss_pred CCCChh--h---------------HHHHHHhcCC-----------CCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEc
Q 001570 787 ESASIP--Y---------------FDAIMLHMKS-----------YDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLID 837 (1051)
Q Consensus 787 ~~~~i~--~---------------~d~i~~~~~~-----------~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLD 837 (1051)
+...+. . +.++....+. +..+..+-..+|+|++| ++.+.+.+.+|+++|||
T Consensus 563 ~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILD 642 (711)
T TIGR00958 563 EPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILD 642 (711)
T ss_pred CccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 764331 1 1122222222 22223333568888887 55556679999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeE
Q 001570 838 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 891 (1051)
Q Consensus 838 Ep~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~ 891 (1051)
|||+++|+.....+.. .....++|+|++||..+....+++...+.++++.
T Consensus 643 EpTSaLD~~te~~i~~----~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~iv 692 (711)
T TIGR00958 643 EATSALDAECEQLLQE----SRSRASRTVLLIAHRLSTVERADQILVLKKGSVV 692 (711)
T ss_pred ccccccCHHHHHHHHH----hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 9999999976555533 2223578999999999988777665555555443
No 351
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.57 E-value=7.4e-15 Score=180.92 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=111.4
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh--------------------hcceeecCCCCChh---
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGLMVPAESASIP--- 792 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la--------------------~~G~~vpa~~~~i~--- 792 (1051)
+++.+++|+++ |++++|+|||||||||||++|+|..... +...|||++...++
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 46789999999 8999999999999999999999975221 11247777643321
Q ss_pred ------------------------hHHHHHHhcCCCCCccCCc------cchhHHHHH-HHHHHHHcCCCcEEEEcCCCC
Q 001570 793 ------------------------YFDAIMLHMKSYDSPADGK------SSFQVEMSE-IRSIVTATTSRSLVLIDEICR 841 (1051)
Q Consensus 793 ------------------------~~d~i~~~~~~~d~~~~~~------stfs~e~~~-~~~il~~a~~~sLlLLDEp~~ 841 (1051)
.++.++..+|+.+..+... ..+|+|+++ +..+.+.+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 1345566666654333322 358888877 455577799999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEeccCh--hhhhCcccccccccceeEEE
Q 001570 842 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLH--GIFSLPLKIKNAAYKAMGTE 893 (1051)
Q Consensus 842 GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~--el~~l~~~~~~i~~~~~~~~ 893 (1051)
|||+.....+. ..++.+++.|.|+|++||++ ++.++.++..-+.++++...
T Consensus 196 gLD~~~~~~l~-~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~ 248 (617)
T TIGR00955 196 GLDSFMAYSVV-QVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYL 248 (617)
T ss_pred chhHHHHHHHH-HHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEE
Confidence 99999988884 44555666799999999997 45677776655556665544
No 352
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.57 E-value=9.2e-14 Score=165.86 Aligned_cols=142 Identities=13% Similarity=0.044 Sum_probs=100.0
Q ss_pred CcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh-------h--cceeecCCCCCh----hh--
Q 001570 733 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------I--CGLMVPAESASI----PY-- 793 (1051)
Q Consensus 733 ~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la-------~--~G~~vpa~~~~i----~~-- 793 (1051)
++.+.+.+++.++.+++| |+.++|+||||+|||||||+|+|..-.. + ...|++|+...+ ..
T Consensus 326 ~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d 405 (530)
T COG0488 326 NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLE 405 (530)
T ss_pred ccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHH
Confidence 334455556789999999 8999999999999999999997765211 1 112555554221 11
Q ss_pred -------------HHHHHHhcCCCC-CccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 001570 794 -------------FDAIMLHMKSYD-SPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 858 (1051)
Q Consensus 794 -------------~d~i~~~~~~~d-~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~ 858 (1051)
+...+.+|+... ...+...++|+|.+.... +.-.+.+|.++||||||+.||.....++ .+.
T Consensus 406 ~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aL----e~a 481 (530)
T COG0488 406 ELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL----EEA 481 (530)
T ss_pred HHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHH----HHH
Confidence 223445555443 345677899998886444 4445789999999999999999775555 444
Q ss_pred HHcCCcEEEEeccChhhhhC
Q 001570 859 LDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 859 L~~~g~~vi~~TH~~el~~l 878 (1051)
|.+..-|+|+||||..+.+.
T Consensus 482 L~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 482 LLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred HHhCCCeEEEEeCCHHHHHh
Confidence 45566799999999999764
No 353
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.57 E-value=5.3e-14 Score=176.10 Aligned_cols=155 Identities=14% Similarity=0.082 Sum_probs=108.2
Q ss_pred cccccCC-CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCC
Q 001570 734 YWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAES 788 (1051)
Q Consensus 734 ~~~~~~~-~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~ 788 (1051)
+.+.+.+ ++.++++++| |+.++|+||||||||||+|+|+|+... .+...+|||+.
T Consensus 461 vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~ 540 (694)
T TIGR01846 461 IRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQEN 540 (694)
T ss_pred EEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCC
Confidence 3455543 4579999999 899999999999999999999998621 22344788875
Q ss_pred CChhh-----------------HHHHHHhc-----------CCCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCC
Q 001570 789 ASIPY-----------------FDAIMLHM-----------KSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEI 839 (1051)
Q Consensus 789 ~~i~~-----------------~d~i~~~~-----------~~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp 839 (1051)
..++. +.+.+... |.+..+..+-..+|+|++| ++.+.+.+.+|+++|||||
T Consensus 541 ~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEp 620 (694)
T TIGR01846 541 VLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEA 620 (694)
T ss_pred eehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 43311 11111222 2222233444678988887 4555667999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCccccccccccee
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 890 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~ 890 (1051)
|+++|+.....+...+.+ +. .++|+|++||+.+....+++...+.++.+
T Consensus 621 ts~LD~~~~~~i~~~l~~-~~-~~~t~i~itH~~~~~~~~d~ii~l~~G~i 669 (694)
T TIGR01846 621 TSALDYESEALIMRNMRE-IC-RGRTVIIIAHRLSTVRACDRIIVLEKGQI 669 (694)
T ss_pred CcCCCHHHHHHHHHHHHH-Hh-CCCEEEEEeCChHHHHhCCEEEEEeCCEE
Confidence 999999888888555544 33 57899999999988777665444444443
No 354
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=6.7e-15 Score=169.35 Aligned_cols=162 Identities=14% Similarity=0.055 Sum_probs=113.8
Q ss_pred CCcccccCCCc-eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhh--------------------cceeecC
Q 001570 732 SPYWFDAAEGS-AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------------------CGLMVPA 786 (1051)
Q Consensus 732 ~~~~~~~~~~~-~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~--------------------~G~~vpa 786 (1051)
.++.+.+++++ ++++|++| |+-++|+|++||||||+++.++|.....+ .-++++|
T Consensus 340 ~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Q 419 (573)
T COG4987 340 RNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQ 419 (573)
T ss_pred ccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhcc
Confidence 44556676655 89999999 89999999999999999999998652221 1223333
Q ss_pred CCCChh-----------------hHHHHHHhcCCCC-----------CccCCccchhHHHHH-HHHHHHHcCCCcEEEEc
Q 001570 787 ESASIP-----------------YFDAIMLHMKSYD-----------SPADGKSSFQVEMSE-IRSIVTATTSRSLVLID 837 (1051)
Q Consensus 787 ~~~~i~-----------------~~d~i~~~~~~~d-----------~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLD 837 (1051)
....+. .+-.++..+|..+ .+..+=..||+|.++ ++.+....++.+++|||
T Consensus 420 r~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLD 499 (573)
T COG4987 420 RVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLD 499 (573)
T ss_pred chHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEec
Confidence 322110 0112334444332 223333567777666 55556668899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeEEEEe
Q 001570 838 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYL 895 (1051)
Q Consensus 838 Ep~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~~~~~ 895 (1051)
|||.|||+....++...+.++++ |+|+||+||..-..+.++....+.+++..++..
T Consensus 500 EPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le~~drIivl~~Gkiie~G~ 555 (573)
T COG4987 500 EPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGT 555 (573)
T ss_pred CCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHhhcCEEEEEECCeeeecCC
Confidence 99999999999999777777764 789999999988888887777777777665543
No 355
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.57 E-value=1e-14 Score=178.78 Aligned_cols=148 Identities=14% Similarity=0.142 Sum_probs=103.9
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh--------------------hcceeecCCCCChh--h--
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGLMVPAESASIP--Y-- 793 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la--------------------~~G~~vpa~~~~i~--~-- 793 (1051)
+.++++++| |+.++|+||||||||||+|+|+|+.... +.-.++||+...++ .
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~ 432 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVME 432 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHH
Confidence 679999999 8999999999999999999999987221 22357888754321 1
Q ss_pred -------------HHHHHHhcC-----------CCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 794 -------------FDAIMLHMK-----------SYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 794 -------------~d~i~~~~~-----------~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
+...+...+ ....+..+-..+|+|++| ++.+.+.+.+|+++||||||+++|+...
T Consensus 433 Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~ 512 (576)
T TIGR02204 433 NIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESE 512 (576)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHH
Confidence 111122222 222233445678888877 5555667899999999999999999887
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeE
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 891 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~ 891 (1051)
..+...+ ..+. .++|+|++||+.+....+++.-.+.++.+.
T Consensus 513 ~~i~~~l-~~~~-~~~t~IiitH~~~~~~~~d~vi~l~~g~~~ 553 (576)
T TIGR02204 513 QLVQQAL-ETLM-KGRTTLIIAHRLATVLKADRIVVMDQGRIV 553 (576)
T ss_pred HHHHHHH-HHHh-CCCEEEEEecchHHHHhCCEEEEEECCEEE
Confidence 7664444 4443 479999999999888776655444444443
No 356
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.56 E-value=4.9e-15 Score=150.54 Aligned_cols=137 Identities=19% Similarity=0.251 Sum_probs=104.7
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH---------------------hhhcce-eecCCCCCh--
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---------------------LGICGL-MVPAESASI-- 791 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~---------------------la~~G~-~vpa~~~~i-- 791 (1051)
++-.++|++|| |+.-+|+||||+||||+|..|+|-.. .++.|. --+|.+..+
T Consensus 16 ~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ 95 (249)
T COG4674 16 GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFEN 95 (249)
T ss_pred cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhh
Confidence 46678999999 89999999999999999999999762 233332 001111000
Q ss_pred ------------------------------hhHHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCC
Q 001570 792 ------------------------------PYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEIC 840 (1051)
Q Consensus 792 ------------------------------~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~ 840 (1051)
..+|.++..+|+.+......+++|.|++|...| +-.+++|.|+|+|||.
T Consensus 96 ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPv 175 (249)
T COG4674 96 LTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPV 175 (249)
T ss_pred ccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCcc
Confidence 124667777788888777888899999987666 4458999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
+|+...+.... ..++..++. +++++++.||+++...
T Consensus 176 AGMTd~Et~~t-aeLl~~la~-~hsilVVEHDM~Fvr~ 211 (249)
T COG4674 176 AGMTDAETEKT-AELLKSLAG-KHSILVVEHDMGFVRE 211 (249)
T ss_pred CCCcHHHHHHH-HHHHHHHhc-CceEEEEeccHHHHHH
Confidence 99999888887 556666764 6899999999999864
No 357
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.56 E-value=1.2e-14 Score=177.93 Aligned_cols=148 Identities=14% Similarity=0.141 Sum_probs=102.3
Q ss_pred cccCC-CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCC
Q 001570 736 FDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESAS 790 (1051)
Q Consensus 736 ~~~~~-~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~ 790 (1051)
+.+.+ +..++++++| |+.++|+||||||||||+++|+|+... .+.-.++|++...
T Consensus 321 ~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 321 FTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred EECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 44443 3579999999 899999999999999999999998621 1223477776533
Q ss_pred hh--h---------------HHHHHHhcCCCC-----------CccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCC
Q 001570 791 IP--Y---------------FDAIMLHMKSYD-----------SPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICR 841 (1051)
Q Consensus 791 i~--~---------------~d~i~~~~~~~d-----------~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~ 841 (1051)
++ . +.......+..+ .+..+-..+|+|++| ++.+.+.+.+|+++||||||+
T Consensus 401 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts 480 (569)
T PRK10789 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALS 480 (569)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 21 1 111222222221 122334568888887 455567799999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCccccccc
Q 001570 842 GTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNA 885 (1051)
Q Consensus 842 GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i 885 (1051)
|+|+.....+...+.+ +. .+.|+|++||+.+....+++.-.+
T Consensus 481 ~LD~~~~~~i~~~l~~-~~-~~~tii~itH~~~~~~~~d~i~~l 522 (569)
T PRK10789 481 AVDGRTEHQILHNLRQ-WG-EGRTVIISAHRLSALTEASEILVM 522 (569)
T ss_pred cCCHHHHHHHHHHHHH-Hh-CCCEEEEEecchhHHHcCCEEEEE
Confidence 9999888888555444 43 589999999999887665544333
No 358
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.55 E-value=1.3e-14 Score=176.01 Aligned_cols=146 Identities=14% Similarity=0.095 Sum_probs=103.3
Q ss_pred CcccccCCC-ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCC
Q 001570 733 PYWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAE 787 (1051)
Q Consensus 733 ~~~~~~~~~-~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~ 787 (1051)
++.+.++++ +++++++++ |+.++|+||||||||||+|+|+|+... .+.-.+|||+
T Consensus 325 ~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~ 404 (529)
T TIGR02857 325 GLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQH 404 (529)
T ss_pred EEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCC
Confidence 344555543 479999999 899999999999999999999998721 1223478877
Q ss_pred CCChh--h---------------HHHHHHhcCCCC-----------CccCCccchhHHHHHH-HHHHHHcCCCcEEEEcC
Q 001570 788 SASIP--Y---------------FDAIMLHMKSYD-----------SPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDE 838 (1051)
Q Consensus 788 ~~~i~--~---------------~d~i~~~~~~~d-----------~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDE 838 (1051)
...++ . +...+...+..+ .+..+-..+|+|++|. +.+.+.+.+|+++||||
T Consensus 405 ~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE 484 (529)
T TIGR02857 405 PFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDE 484 (529)
T ss_pred CcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 54321 1 112222233222 2223345788888884 44566799999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcc
Q 001570 839 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 880 (1051)
Q Consensus 839 p~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~ 880 (1051)
||+++|+.....+...+.+ +. .++|+|++||+++....++
T Consensus 485 ~ts~lD~~~~~~i~~~l~~-~~-~~~t~i~itH~~~~~~~~d 524 (529)
T TIGR02857 485 PTAHLDAETEALVTEALRA-LA-QGRTVLLVTHRLALAERAD 524 (529)
T ss_pred cccccCHHHHHHHHHHHHH-hc-CCCEEEEEecCHHHHHhCC
Confidence 9999999888888555544 43 5799999999998876554
No 359
>PLN03140 ABC transporter G family member; Provisional
Probab=99.55 E-value=2e-14 Score=189.93 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=104.8
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------------------hhcceeecCCCCChh-----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------------------GICGLMVPAESASIP----- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------------------a~~G~~vpa~~~~i~----- 792 (1051)
++.+++|+|+ |++++|+|||||||||||++|+|.... .+.-.||+|+...++
T Consensus 892 ~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971 (1470)
T ss_pred CceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHH
Confidence 3479999999 899999999999999999999997521 011246666532221
Q ss_pred ----------------------hHHHHHHhcCCCCCccCC-----ccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCC
Q 001570 793 ----------------------YFDAIMLHMKSYDSPADG-----KSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTE 844 (1051)
Q Consensus 793 ----------------------~~d~i~~~~~~~d~~~~~-----~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD 844 (1051)
.+++++..+++.+..... ...+|+|+++... +.+.+.+|++++|||||+|||
T Consensus 972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 123455556665433332 2578999988554 467799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeccChh--hhhCcccccccc
Q 001570 845 TAKGTCIAGSIIETLDNIGCLGIVSTHLHG--IFSLPLKIKNAA 886 (1051)
Q Consensus 845 ~~~~~~l~~~ile~L~~~g~~vi~~TH~~e--l~~l~~~~~~i~ 886 (1051)
+.....+ ..+++.+++.|.|||++||+++ +.+.+++...+.
T Consensus 1052 ~~~a~~v-~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~ 1094 (1470)
T PLN03140 1052 ARAAAIV-MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1094 (1470)
T ss_pred HHHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEc
Confidence 9888887 5566667777999999999986 345555544443
No 360
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.55 E-value=1.1e-14 Score=155.27 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=111.9
Q ss_pred eEEEEEcCCCCCcchHHHHHHhhHHh--------------hhcc----------eeecCCCCChh---------------
Q 001570 752 SLFLLTGPNGGGKSSLLRSICAASLL--------------GICG----------LMVPAESASIP--------------- 792 (1051)
Q Consensus 752 ~i~~ItGpNGsGKSTLLk~I~gl~~l--------------a~~G----------~~vpa~~~~i~--------------- 792 (1051)
.+++|-|++|||||||+|+|+|+... +..| .||+|+...+|
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~ 104 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS 104 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc
Confidence 79999999999999999999999721 1111 26666654443
Q ss_pred ---hHHHHHHhcCCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCcEEE
Q 001570 793 ---YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGI 867 (1051)
Q Consensus 793 ---~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~-~~g~~vi 867 (1051)
.||++..-+|++..+.+..+++|+|.+|...| .+..+.|.|+|||||.+.||..-..++ .-.+|.|. +.+..|+
T Consensus 105 ~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Ei-lpylERL~~e~~IPIl 183 (352)
T COG4148 105 MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREI-LPYLERLRDEINIPIL 183 (352)
T ss_pred chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHH-HHHHHHHHHhcCCCEE
Confidence 36888889999999999999999998886665 677999999999999999999888888 56666665 4689999
Q ss_pred EeccChh-hhhCcccccccccceeEEE
Q 001570 868 VSTHLHG-IFSLPLKIKNAAYKAMGTE 893 (1051)
Q Consensus 868 ~~TH~~e-l~~l~~~~~~i~~~~~~~~ 893 (1051)
++||-++ .+.++++..-+.++.+...
T Consensus 184 YVSHS~~Ev~RLAd~vV~le~GkV~A~ 210 (352)
T COG4148 184 YVSHSLDEVLRLADRVVVLENGKVKAS 210 (352)
T ss_pred EEecCHHHHHhhhheEEEecCCeEEec
Confidence 9999875 4567777777777776543
No 361
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.55 E-value=1.8e-14 Score=140.47 Aligned_cols=137 Identities=17% Similarity=0.161 Sum_probs=108.0
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH----------------------hhhcceeecCCCCChh-
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL----------------------LGICGLMVPAESASIP- 792 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~----------------------la~~G~~vpa~~~~i~- 792 (1051)
++...+-++++ |+++.|+||+|||||||+.-++|.+. -.|+|. .+++.-.+|
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi-LFQD~lLFph 91 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI-LFQDALLFPH 91 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee-eecccccccc
Confidence 46678888888 89999999999999999999999861 112332 122211111
Q ss_pred ----------------------hHHHHHHhcCCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 793 ----------------------YFDAIMLHMKSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 793 ----------------------~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
..+..++++|...-..+...++|++++.... .......|+++|||||++.||..-+.
T Consensus 92 lsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~ 171 (213)
T COG4136 92 LSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRD 171 (213)
T ss_pred cccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHH
Confidence 2355677788877777888899999987444 45568899999999999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEeccChhhhh
Q 001570 850 CIAGSIIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 850 ~l~~~ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
.....+...+...|..+|++|||++-+.
T Consensus 172 qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 172 QFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred HHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 9999999999999999999999987765
No 362
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.55 E-value=3.6e-14 Score=141.45 Aligned_cols=141 Identities=18% Similarity=0.167 Sum_probs=100.2
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh-----------------------------hcceeecC
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----------------------------ICGLMVPA 786 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la-----------------------------~~G~~vpa 786 (1051)
++..-..++|| |++++|+|.+||||||||++|++-+... ..=.+|.+
T Consensus 17 g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQ 96 (258)
T COG4107 17 GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeec
Confidence 34455678888 8999999999999999999999865110 00013322
Q ss_pred CCC-----------Ch------------hh----HHHHHHhcCCC-CCccCCccchhHHHHHHHHH-HHHcCCCcEEEEc
Q 001570 787 ESA-----------SI------------PY----FDAIMLHMKSY-DSPADGKSSFQVEMSEIRSI-VTATTSRSLVLID 837 (1051)
Q Consensus 787 ~~~-----------~i------------~~----~d~i~~~~~~~-d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLD 837 (1051)
.+. .+ +. ...++.++.+. +.++....+||++|+|...| .+.++.|.|++||
T Consensus 97 nP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMD 176 (258)
T COG4107 97 NPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMD 176 (258)
T ss_pred CccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEec
Confidence 211 11 11 12344454443 34556678999999996665 5569999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcc
Q 001570 838 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 880 (1051)
Q Consensus 838 Ep~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~ 880 (1051)
|||.|||..-++.+...+.....+.|..++++|||+..+.+..
T Consensus 177 EPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla 219 (258)
T COG4107 177 EPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLA 219 (258)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhh
Confidence 9999999988888855555555678999999999999887643
No 363
>PLN03073 ABC transporter F family; Provisional
Probab=99.54 E-value=2.3e-14 Score=178.06 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=97.5
Q ss_pred CcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--hhhcce--eecCCCC--Ch-----------
Q 001570 733 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--LGICGL--MVPAESA--SI----------- 791 (1051)
Q Consensus 733 ~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--la~~G~--~vpa~~~--~i----------- 791 (1051)
++.+.+ +++.++++++| |++++|+||||||||||||+|+|..+ ....|. +++++.. ..
T Consensus 182 nls~~y-~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~ 260 (718)
T PLN03073 182 NFSISV-GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDI 260 (718)
T ss_pred eEEEEe-CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhH
Confidence 344444 35679999999 89999999999999999999998531 111111 2222200 00
Q ss_pred ----------hh---------------------------------------------------HHHHHHhcCCC-CCccC
Q 001570 792 ----------PY---------------------------------------------------FDAIMLHMKSY-DSPAD 809 (1051)
Q Consensus 792 ----------~~---------------------------------------------------~d~i~~~~~~~-d~~~~ 809 (1051)
.+ +..++..+|.. +...+
T Consensus 261 ~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~ 340 (718)
T PLN03073 261 ERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVK 340 (718)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhC
Confidence 00 01122223332 12345
Q ss_pred CccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh-Cccccccccc
Q 001570 810 GKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAY 887 (1051)
Q Consensus 810 ~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~ 887 (1051)
...++|+|+++...+ .+.+.+|+++||||||+|||+.....+ .+.|.+.+.++|++||+.++.. .+++...+.+
T Consensus 341 ~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l----~~~L~~~~~tviivsHd~~~l~~~~d~i~~l~~ 416 (718)
T PLN03073 341 ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWL----ETYLLKWPKTFIVVSHAREFLNTVVTDILHLHG 416 (718)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH----HHHHHHcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 678999999986555 556899999999999999999775555 3444445789999999998764 3444433333
Q ss_pred c
Q 001570 888 K 888 (1051)
Q Consensus 888 ~ 888 (1051)
+
T Consensus 417 g 417 (718)
T PLN03073 417 Q 417 (718)
T ss_pred C
Confidence 3
No 364
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.54 E-value=2.1e-14 Score=174.27 Aligned_cols=140 Identities=15% Similarity=0.128 Sum_probs=98.9
Q ss_pred CCcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh-------------------hcceeecCCC
Q 001570 732 SPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------------------ICGLMVPAES 788 (1051)
Q Consensus 732 ~~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la-------------------~~G~~vpa~~ 788 (1051)
.++.+.|++++.+++|+|| |+.++|+||||||||||+|.++|+.... +.-.+|||+.
T Consensus 338 ~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~ 417 (529)
T TIGR02868 338 RDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDA 417 (529)
T ss_pred EEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCc
Confidence 3455666655679999999 8999999999999999999999987211 2335889886
Q ss_pred CChh--h---------------HHHHHHhcCCCC-----------CccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCC
Q 001570 789 ASIP--Y---------------FDAIMLHMKSYD-----------SPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEI 839 (1051)
Q Consensus 789 ~~i~--~---------------~d~i~~~~~~~d-----------~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp 839 (1051)
..++ . +.+.+...+..+ .+..+-..+|+|++| ++.+.+...+|+++|||||
T Consensus 418 ~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~ 497 (529)
T TIGR02868 418 HLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEP 497 (529)
T ss_pred ccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5432 1 112222222222 122223468888887 5555677999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccCh
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 873 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~ 873 (1051)
|+++|+.....+...+.+ + ..++|+|++||.+
T Consensus 498 TSaLD~~te~~I~~~l~~-~-~~~~TvIiItHrl 529 (529)
T TIGR02868 498 TEHLDAGTESELLEDLLA-A-LSGKTVVVITHHL 529 (529)
T ss_pred cccCCHHHHHHHHHHHHH-h-cCCCEEEEEecCC
Confidence 999999887777555543 3 2478999999963
No 365
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.54 E-value=1.2e-14 Score=149.91 Aligned_cols=138 Identities=13% Similarity=0.129 Sum_probs=102.5
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhc--------------------ceeecCCCC-----C
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC--------------------GLMVPAESA-----S 790 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~--------------------G~~vpa~~~-----~ 790 (1051)
..+.+++++++ |+++.|+|.||+|||||+++|+|-+.+... -.-|+|++. .
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 35678999988 899999999999999999999998732110 011222211 0
Q ss_pred hh---------------------------hHHHHHHh--cCCCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCC
Q 001570 791 IP---------------------------YFDAIMLH--MKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 791 i~---------------------------~~d~i~~~--~~~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~ 840 (1051)
+. .+..-+.. .|.+..+......+|+|++| ++.+++.+++|++++|||-|
T Consensus 97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHT 176 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHT 176 (263)
T ss_pred ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchh
Confidence 00 01111222 25566667778889999999 56667889999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
++|||.....+.....+...+.+.|.+|+||+++.+-
T Consensus 177 AALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al 213 (263)
T COG1101 177 AALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDAL 213 (263)
T ss_pred hcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHH
Confidence 9999999888877777777788999999999998764
No 366
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.54 E-value=2.9e-14 Score=188.77 Aligned_cols=147 Identities=18% Similarity=0.236 Sum_probs=106.1
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH---hh----------------hcceeecCCCCChh-----
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---LG----------------ICGLMVPAESASIP----- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~---la----------------~~G~~vpa~~~~i~----- 792 (1051)
++.+++|+++ |++++|+|||||||||||++|+|... .. +.-.||||+...++
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHH
Confidence 4679999999 89999999999999999999999863 10 11236776532211
Q ss_pred ----------------------hHHHHHHhcCCCCCccCCcc----chhHHHHHHHHH-HHHcCCCc-EEEEcCCCCCCC
Q 001570 793 ----------------------YFDAIMLHMKSYDSPADGKS----SFQVEMSEIRSI-VTATTSRS-LVLIDEICRGTE 844 (1051)
Q Consensus 793 ----------------------~~d~i~~~~~~~d~~~~~~s----tfs~e~~~~~~i-l~~a~~~s-LlLLDEp~~GlD 844 (1051)
.+++++..+++.+..+.... .+|+|++|...| ++.+.+|+ ++||||||+|||
T Consensus 855 E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD 934 (1394)
T TIGR00956 855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934 (1394)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCC
Confidence 12345566666554444443 689999885554 67789996 999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeccChhh--hhCcccccccccc
Q 001570 845 TAKGTCIAGSIIETLDNIGCLGIVSTHLHGI--FSLPLKIKNAAYK 888 (1051)
Q Consensus 845 ~~~~~~l~~~ile~L~~~g~~vi~~TH~~el--~~l~~~~~~i~~~ 888 (1051)
+.....+ ..+++.+++.|.|||++||+++. .+..++.-.+..+
T Consensus 935 ~~~~~~i-~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~G 979 (1394)
T TIGR00956 935 SQTAWSI-CKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979 (1394)
T ss_pred HHHHHHH-HHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCC
Confidence 9887777 66666677779999999999874 2455544334343
No 367
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.52 E-value=2.4e-13 Score=155.31 Aligned_cols=143 Identities=18% Similarity=0.231 Sum_probs=107.5
Q ss_pred CCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhH--------------------HhhhcceeecCCCCChhh-
Q 001570 739 AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--------------------LLGICGLMVPAESASIPY- 793 (1051)
Q Consensus 739 ~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~--------------------~la~~G~~vpa~~~~i~~- 793 (1051)
..+++++++++| |+.++|+||+|||||||.|.|.|+. .+++...|.||+-..++-
T Consensus 346 g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GT 425 (580)
T COG4618 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGT 425 (580)
T ss_pred CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCc
Confidence 345799999999 8999999999999999999999986 234444588887544321
Q ss_pred -------H------------------HHHHHhc--CCCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCH
Q 001570 794 -------F------------------DAIMLHM--KSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTET 845 (1051)
Q Consensus 794 -------~------------------d~i~~~~--~~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~ 845 (1051)
| .++..++ |.+-.+-.+-+++|+|++| +..+.+.-.+|.||+||||-++||.
T Consensus 426 IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~ 505 (580)
T COG4618 426 IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS 505 (580)
T ss_pred HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence 1 1111111 3333444556789999988 5555667899999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccc
Q 001570 846 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 882 (1051)
Q Consensus 846 ~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~ 882 (1051)
..-.+++.+|.+ ++++|+++|++||-+......+..
T Consensus 506 ~GE~AL~~Ai~~-~k~rG~~vvviaHRPs~L~~~Dki 541 (580)
T COG4618 506 EGEAALAAAILA-AKARGGTVVVIAHRPSALASVDKI 541 (580)
T ss_pred hHHHHHHHHHHH-HHHcCCEEEEEecCHHHHhhccee
Confidence 777777666655 677899999999999987766543
No 368
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.52 E-value=3e-14 Score=152.57 Aligned_cols=138 Identities=19% Similarity=0.201 Sum_probs=89.7
Q ss_pred CCceeeeeEeeceEEEEEcCCCCCcchHHHHHHhhH------Hh-hhcceeecCCCCChhh---------H---------
Q 001570 740 EGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAS------LL-GICGLMVPAESASIPY---------F--------- 794 (1051)
Q Consensus 740 ~~~~vl~~islg~i~~ItGpNGsGKSTLLk~I~gl~------~l-a~~G~~vpa~~~~i~~---------~--------- 794 (1051)
++..+++++++ ++++|+|||||||||+|++|..+. .. .+.| ++|+.....+. +
T Consensus 15 ~~~~~l~~~~~-~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (212)
T cd03274 15 AGEQVIGPFHK-SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLS-DLIHNSAGHPNLDSCSVEVHFQEIIDKPLL 92 (212)
T ss_pred CCCeeeccCCC-CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHH-HHhcCCCCCCCCceEEEEEEEEeCCCHHHH
Confidence 45678888887 899999999999999999998432 01 1122 22222111100 0
Q ss_pred ----------------HHHHHhcCCCCCccCCccchhHHHHHHHHHHH-Hc----CCCcEEEEcCCCCCCCHHHHHHHHH
Q 001570 795 ----------------DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVT-AT----TSRSLVLIDEICRGTETAKGTCIAG 853 (1051)
Q Consensus 795 ----------------d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~-~a----~~~sLlLLDEp~~GlD~~~~~~l~~ 853 (1051)
..+...+++.+......+.+|.++++...+.. .+ .+|+++++|||++|+|+.....+ +
T Consensus 93 ~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l-~ 171 (212)
T cd03274 93 KSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIV-A 171 (212)
T ss_pred HHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHH-H
Confidence 01111222333334445678889988666544 32 35799999999999999888777 5
Q ss_pred HHHHHHHcCCcEEEEeccChhhhhCccc
Q 001570 854 SIIETLDNIGCLGIVSTHLHGIFSLPLK 881 (1051)
Q Consensus 854 ~ile~L~~~g~~vi~~TH~~el~~l~~~ 881 (1051)
.+++.+. .+.++|++||+.++...++.
T Consensus 172 ~~l~~~~-~~~~~iivs~~~~~~~~~d~ 198 (212)
T cd03274 172 NYIKERT-KNAQFIVISLRNNMFELADR 198 (212)
T ss_pred HHHHHHc-CCCEEEEEECcHHHHHhCCE
Confidence 5555665 46788999999887766554
No 369
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=99.51 E-value=5.1e-14 Score=175.29 Aligned_cols=310 Identities=21% Similarity=0.205 Sum_probs=212.3
Q ss_pred hhcCCCCccccccccccCCccccc--e-eecHHhhhccCCCCCCCccceEecCCCccCCCHHHHHHhhhcCCc------c
Q 001570 347 ELYGLENEVTFRNVTVSYENRPRP--L-HLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPA------Y 417 (1051)
Q Consensus 347 ~~~gl~~~~~~~~~~~~~~~~~~~--L-yLd~~Tq~ell~~~~~~sLl~v~l~~t~t~mg~r~LR~llL~P~~------~ 417 (1051)
..||......|.-...+....+++ + |+ ..||+..+++ ..-+..+....+|.||..|+|||+|+++. |
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~a~~~ll~Y~-~~t~~~~l~~---~~~~~~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~g 283 (843)
T COG0249 208 EYFGVRDLDGFGLISTPLALSAAGALLSYL-KDTQKTFLPH---IQIIQRYDLEDYMVLDAATRRNLELFSNLRGNGKKG 283 (843)
T ss_pred HHhCcccccccccccchHHHHHHHHHHHHH-HHhhhccccc---cccceeeccCcEEEEcHHHHhcccccccCCCCCCCC
Confidence 456655444321111123455666 4 99 8999987777 56667767789999999999999999997 5
Q ss_pred cHHHHHHHHHhHhhhhhcCCCcHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhhcChHHHHHHHhccCchhhcccchhhH
Q 001570 418 EIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDF 497 (1051)
Q Consensus 418 sl~~~I~~r~t~mg~~l~~i~dlerL~~~L~~p~a~~~dl~~I~~rL~aV~~l~~~~~l~~~L~~~l~~~~~~~g~~~dl 497 (1051)
+|+|.+|+|.|+||. |+|+.||.+| ++|..+|..||++|+.|.+++.+++.|+..|..++ |+
T Consensus 284 SL~~~ld~t~T~mG~--------RlL~~wl~~P---L~~~~~I~~Rld~Ve~l~~~~~l~~~L~~~L~~v~-------Dl 345 (843)
T COG0249 284 SLFWLLDRTVTPMGS--------RLLKRWLLQP---LLDKEEIEERLDAVEELKDNPELREKLREMLKKVP-------DL 345 (843)
T ss_pred cHHHHhccCCCchhH--------HHHHHHhhCc---ccCHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCc-------CH
Confidence 999999999999999 9999999999 99999999999999999999999999999999988 99
Q ss_pred HHhhhHhHHHHHHHHHhhhccCCchhhhccCCCCCh--hHHhhcc-hhhhhhhhhcccchhHHHHHHHHHHHHHhhccCc
Q 001570 498 ETLVEECRLASVRIGEMISLDGESDQKICSYDNIPS--EFFEDME-STWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDF 574 (1051)
Q Consensus 498 erl~~~~~~~~~~i~~~i~l~~e~p~~~~~~~~I~~--~f~~~ld-s~~~g~V~~~~~~e~l~elr~l~~~L~~aI~ed~ 574 (1051)
+|+++|+..+...++|+..+ .+++..+|+ ..+.... ......+.. .+. .++.+.++...+..+|.++.
T Consensus 346 eRl~~Rl~~~~~~~rDl~~l-------~~~l~~~~~i~~~l~~~~~~~~l~~~~~-~i~-~~~~~~e~~~ll~~~i~~~~ 416 (843)
T COG0249 346 ERLLSRLSLGRASPRDLLRL-------RDSLEKIPEIFKLLSSLKSESDLLLLLE-DIE-SLDYLAELLELLETAINEDP 416 (843)
T ss_pred HHHHHHHHcCCCChhhHHHH-------HHHHHHHHHHHHHHhccccchhhhHHhh-hhh-ccccHHHHHHHHHHHhhhcc
Confidence 99999999999999999997 666677766 2222222 111111111 112 33346688899999999999
Q ss_pred hhHHhhhhccccCCCCCchhhh---hhhcccceeecccccccccccCCCCccccccccccccccCc-----------ccc
Q 001570 575 LPIISRIKATTAPLGGPKGEIL---YAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGR-----------KVG 640 (1051)
Q Consensus 575 lpi~~re~~~ir~tgg~~~eI~---y~~~~~~~~l~Gy~ieV~v~~~~~~~~~I~~l~~~~~~~g~-----------~v~ 640 (1051)
|...++ .+|+ .|++.++. ........|+.. +...++.+.++++++..++.... .++
T Consensus 417 -~~~~~~-~ii~--~g~~~eLd~lr~~~~~~~~~i~~------le~~~r~~~gi~slki~~n~v~Gy~ievt~~~~~~~p 486 (843)
T COG0249 417 -PLAVRD-GIIK--EGYNIELDELRDLLNNAKEWIAK------LELEERERTGIKSLKIKYNKVYGYYIEVTKSNAKLVP 486 (843)
T ss_pred -hhhcch-hHHh--cchhHHHHHHHHHHHHHHHHHHH------HHHHHHHhcCCchhhhhhhccceeEEEechhccccCc
Confidence 888887 7777 78888853 334444455554 23345677788888877774322 111
Q ss_pred ceeeeh-HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001570 641 EEWFST-LKVEE-------ALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFA 700 (1051)
Q Consensus 641 ~e~f~t-~eL~e-------a~er~~~ae~~a~e~i~eiL~eL~~~L~~~~~~L~~l~~lla~Adal~~ 700 (1051)
.. |+. ..+++ .+..+++....+++++...=.++..++.+.+ ......+...+.++..
T Consensus 487 ~~-~ir~qt~kn~~rf~t~el~~~e~~i~~a~~~i~~lE~~l~~~~~~~i--~~~~~~l~~~a~aLa~ 551 (843)
T COG0249 487 DD-YIRRQTLKNAERFTTPELKELEEKLLDAEEKILALEYELFDELREKI--LAHINELQALAKALAE 551 (843)
T ss_pred hH-HHHHHHHhcceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 11 111 11111 2333444445555555555555666655543 3445555555555443
No 370
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.50 E-value=1.6e-13 Score=149.89 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=54.6
Q ss_pred CCccchhHHHHHHHHHHHH-c----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccc
Q 001570 809 DGKSSFQVEMSEIRSIVTA-T----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 882 (1051)
Q Consensus 809 ~~~stfs~e~~~~~~il~~-a----~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~ 882 (1051)
....++|+|+++...+... + .+|+++|||||++|+|+.....+.. .+..+.+ +.++|++||..+....+++.
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~-~l~~~~~-~~~ii~~~h~~~~~~~~d~i 230 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVAN-MIKELSD-GAQFITTTFRPELLEVADKF 230 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHH-HHHHHhC-CCEEEEEecCHHHHhhCCEE
Confidence 4567899999886555433 2 4689999999999999988887744 5555554 78999999998877666544
No 371
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.49 E-value=8.7e-14 Score=170.32 Aligned_cols=156 Identities=12% Similarity=0.141 Sum_probs=111.9
Q ss_pred CcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH---------------------hhhcceeecCC
Q 001570 733 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---------------------LGICGLMVPAE 787 (1051)
Q Consensus 733 ~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~---------------------la~~G~~vpa~ 787 (1051)
++.+.+++++.+++|+|| |+.++|+|||||||||+++.++++.. ..+++ +|||+
T Consensus 333 ~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~-~V~Qd 411 (567)
T COG1132 333 NVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG-IVSQD 411 (567)
T ss_pred EEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc-EEccc
Confidence 455666667899999999 89999999999999999999999872 23344 88887
Q ss_pred CCChh--h---------------H---------HHHHHhc--CCCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcC
Q 001570 788 SASIP--Y---------------F---------DAIMLHM--KSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDE 838 (1051)
Q Consensus 788 ~~~i~--~---------------~---------d~i~~~~--~~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDE 838 (1051)
...+. . + +..+.++ |.+..+..+-..+|+|++| ++.+.+...+|+++||||
T Consensus 412 ~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDE 491 (567)
T COG1132 412 PLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDE 491 (567)
T ss_pred ceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 64432 1 1 1111222 2222333344678999888 455566799999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeE
Q 001570 839 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 891 (1051)
Q Consensus 839 p~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~ 891 (1051)
||+++|+.....+..++. .+. .+.|+|+++|.+.....++....+.++.+.
T Consensus 492 aTSalD~~tE~~I~~~l~-~l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i~ 542 (567)
T COG1132 492 ATSALDTETEALIQDALK-KLL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIV 542 (567)
T ss_pred cccccCHHhHHHHHHHHH-HHh-cCCEEEEEeccHhHHHhCCEEEEEECCEEE
Confidence 999999988888866665 444 457999999998877777665555555543
No 372
>PTZ00243 ABC transporter; Provisional
Probab=99.49 E-value=1.2e-13 Score=184.75 Aligned_cols=147 Identities=13% Similarity=0.105 Sum_probs=104.6
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh-------hcceeecCCCCChh--hHH------------
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESASIP--YFD------------ 795 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la-------~~G~~vpa~~~~i~--~~d------------ 795 (1051)
++.++++++| |++++|+|||||||||||++|+|..... ....|+||+...+. ..+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~ 751 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAAR 751 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHH
Confidence 4679999998 8999999999999999999999986321 22347888743221 111
Q ss_pred --HH---------HHhc--CCCCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHc
Q 001570 796 --AI---------MLHM--KSYDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN 861 (1051)
Q Consensus 796 --~i---------~~~~--~~~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~ 861 (1051)
+. +..+ |....+.....++|+|++|.. .+.+.+.+|+++|||||+++||+..+..+...++....
T Consensus 752 ~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~- 830 (1560)
T PTZ00243 752 LADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL- 830 (1560)
T ss_pred HHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh-
Confidence 11 1122 333334455678999998854 45666899999999999999999888888665544333
Q ss_pred CCcEEEEeccChhhhhCcccccccccc
Q 001570 862 IGCLGIVSTHLHGIFSLPLKIKNAAYK 888 (1051)
Q Consensus 862 ~g~~vi~~TH~~el~~l~~~~~~i~~~ 888 (1051)
.|.|+|++||+.+++..+++...+.++
T Consensus 831 ~~~TvIlvTH~~~~~~~ad~ii~l~~G 857 (1560)
T PTZ00243 831 AGKTRVLATHQVHVVPRADYVVALGDG 857 (1560)
T ss_pred CCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 489999999999988765544333333
No 373
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.48 E-value=8.9e-14 Score=174.02 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=110.2
Q ss_pred CcccccCC--CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhH---------------------Hhhhcceeec
Q 001570 733 PYWFDAAE--GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS---------------------LLGICGLMVP 785 (1051)
Q Consensus 733 ~~~~~~~~--~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~---------------------~la~~G~~vp 785 (1051)
++.+.|+. +..+++++|| |+.++|+|||||||||+++.+.++. +..++| .|.
T Consensus 355 nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ig-lV~ 433 (1228)
T KOG0055|consen 355 NVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIG-LVS 433 (1228)
T ss_pred EEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcC-eee
Confidence 44555553 4589999999 8999999999999999999999987 233455 566
Q ss_pred CCCCChh--hHHHHH------------H------------hc--CCCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEE
Q 001570 786 AESASIP--YFDAIM------------L------------HM--KSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLI 836 (1051)
Q Consensus 786 a~~~~i~--~~d~i~------------~------------~~--~~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLL 836 (1051)
|++..+. ..++|. . .+ |.+-..-..--.+|+|++| ++.+.+.+.+|++|||
T Consensus 434 QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLL 513 (1228)
T KOG0055|consen 434 QEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLL 513 (1228)
T ss_pred echhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEe
Confidence 7664331 111111 0 00 1111112222358899988 5555777999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeEEEE
Q 001570 837 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY 894 (1051)
Q Consensus 837 DEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~~~~ 894 (1051)
||||++||+.....+ +..++... .|.|+|+++|.+...+.++....+.++.+.+..
T Consensus 514 DEaTSaLD~~se~~V-q~ALd~~~-~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G 569 (1228)
T KOG0055|consen 514 DEATSALDAESERVV-QEALDKAS-KGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQG 569 (1228)
T ss_pred cCcccccCHHHHHHH-HHHHHHhh-cCCeEEEEeeehhhhhccCEEEEEECCEEEEec
Confidence 999999999665555 66666654 478999999999888877776666666665443
No 374
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.48 E-value=1e-13 Score=148.63 Aligned_cols=128 Identities=17% Similarity=0.171 Sum_probs=83.7
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHH--------h---h-hc--------ceeecCCCCC---------hh--hHHH-HH
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASL--------L---G-IC--------GLMVPAESAS---------IP--YFDA-IM 798 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~--------l---a-~~--------G~~vpa~~~~---------i~--~~d~-i~ 798 (1051)
|++++|+|||||||||+|++|++.+. . . .. -.++++.... +. .+.+ +.
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~~ 107 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIVL 107 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHhhh
Confidence 46999999999999999999996431 0 0 00 0011211111 01 0111 11
Q ss_pred -HhcCCCCCccCCccchhHHHHHHHHHH-HHc----------CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEE
Q 001570 799 -LHMKSYDSPADGKSSFQVEMSEIRSIV-TAT----------TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLG 866 (1051)
Q Consensus 799 -~~~~~~d~~~~~~stfs~e~~~~~~il-~~a----------~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~v 866 (1051)
...+..+.+.....++|+++++...+. +.+ .+|+++|||||++|+|+.....+ ..+++.+++.+.|+
T Consensus 108 l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~-~~~l~~~~~~~~ti 186 (213)
T cd03279 108 LPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAV-ATALELIRTENRMV 186 (213)
T ss_pred hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHhCCCEE
Confidence 112233445666788999998855543 333 26799999999999999888877 55556676668999
Q ss_pred EEeccChhhhhCc
Q 001570 867 IVSTHLHGIFSLP 879 (1051)
Q Consensus 867 i~~TH~~el~~l~ 879 (1051)
|++||+++++...
T Consensus 187 i~itH~~~~~~~~ 199 (213)
T cd03279 187 GVISHVEELKERI 199 (213)
T ss_pred EEEECchHHHHhh
Confidence 9999999887643
No 375
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.48 E-value=1.3e-13 Score=182.89 Aligned_cols=77 Identities=10% Similarity=0.088 Sum_probs=59.2
Q ss_pred CccchhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCcEEEEeccChhhhhCccccccccc
Q 001570 810 GKSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAY 887 (1051)
Q Consensus 810 ~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~-~g~~vi~~TH~~el~~l~~~~~~i~~ 887 (1051)
....+|+|++|. +.+.+.+.+|+++||||||++||+.....+ ...++.+.+ .|.|+|++||+++....++....+..
T Consensus 576 ~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i-~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 576 NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV-QKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH-HHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeC
Confidence 346789999884 455677999999999999999999887777 455555553 58999999999988776665444433
No 376
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.47 E-value=4.8e-13 Score=153.72 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=105.2
Q ss_pred CcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCC------------------
Q 001570 733 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESAS------------------ 790 (1051)
Q Consensus 733 ~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~------------------ 790 (1051)
++.+.+.++..+.++++| ++.++++||||+|||||||++.|.+.. ..|...|.....
T Consensus 394 nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p-~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~ 472 (614)
T KOG0927|consen 394 NVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP-TIGMVSRHSHNKLPRYNQHLAEQLDLDKSS 472 (614)
T ss_pred ccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc-ccccccccccccchhhhhhhHhhcCcchhH
Confidence 344555555567888888 589999999999999999999998621 122222211111
Q ss_pred -------------hhhHHHHHHhcCCC-CCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHH
Q 001570 791 -------------IPYFDAIMLHMKSY-DSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 855 (1051)
Q Consensus 791 -------------i~~~d~i~~~~~~~-d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~i 855 (1051)
...+..++.++|+. +......+++|.|++. +..+......|.||||||||+|||...-.++
T Consensus 473 le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~l---- 548 (614)
T KOG0927|consen 473 LEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDAL---- 548 (614)
T ss_pred HHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHH----
Confidence 22345677788887 6667788999999987 4555566899999999999999999774444
Q ss_pred HHHHHcCCcEEEEeccChhhhh-Cccccccccc
Q 001570 856 IETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAY 887 (1051)
Q Consensus 856 le~L~~~g~~vi~~TH~~el~~-l~~~~~~i~~ 887 (1051)
.+.+.+..-++|++|||.-+.. .++....+.+
T Consensus 549 aeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~ 581 (614)
T KOG0927|consen 549 AEAINEFPGGVVLVSHDFRLISQVAEEIWVCEN 581 (614)
T ss_pred HHHHhccCCceeeeechhhHHHHHHHHhHhhcc
Confidence 4555555668999999988764 4444333333
No 377
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.47 E-value=4.3e-13 Score=147.44 Aligned_cols=84 Identities=10% Similarity=0.057 Sum_probs=65.4
Q ss_pred HHHhcCCCC-CccCCccchhHHHHHHHHHH-HHcCC---CcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEecc
Q 001570 797 IMLHMKSYD-SPADGKSSFQVEMSEIRSIV-TATTS---RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 871 (1051)
Q Consensus 797 i~~~~~~~d-~~~~~~stfs~e~~~~~~il-~~a~~---~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH 871 (1051)
++..+|+.. .+.+..+++|++++|...+. +.+.+ |+++||||||+|||+.+...+ ..+++.+.+.|.|+|++||
T Consensus 152 ~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l-~~~L~~l~~~g~tvIiitH 230 (261)
T cd03271 152 TLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKL-LEVLQRLVDKGNTVVVIEH 230 (261)
T ss_pred HHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEeC
Confidence 344567765 46778899999998866554 34443 799999999999999998888 5566667777999999999
Q ss_pred ChhhhhCccc
Q 001570 872 LHGIFSLPLK 881 (1051)
Q Consensus 872 ~~el~~l~~~ 881 (1051)
++++...+++
T Consensus 231 ~~~~i~~aD~ 240 (261)
T cd03271 231 NLDVIKCADW 240 (261)
T ss_pred CHHHHHhCCE
Confidence 9998776544
No 378
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.46 E-value=2e-13 Score=182.35 Aligned_cols=149 Identities=19% Similarity=0.092 Sum_probs=105.9
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhh-------cceeecCCCCChh--hHHHHH----------
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI-------CGLMVPAESASIP--YFDAIM---------- 798 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~-------~G~~vpa~~~~i~--~~d~i~---------- 798 (1051)
+++++|++| |++++|+|||||||||||++|+|...... ...|+|++...++ ..++|.
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 518 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRY 518 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHH
Confidence 568999998 89999999999999999999999873221 1247777753321 112211
Q ss_pred ----H---------hcCCCC--CccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcC
Q 001570 799 ----L---------HMKSYD--SPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNI 862 (1051)
Q Consensus 799 ----~---------~~~~~d--~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~ 862 (1051)
. .+...+ .+...-.++|+|++|.. .+.+.+.+|+++|||||++|+|+..+..+...++..+. .
T Consensus 519 ~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~ 597 (1490)
T TIGR01271 519 TSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-S 597 (1490)
T ss_pred HHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c
Confidence 1 111111 12334568999999854 45666899999999999999999999999766655554 4
Q ss_pred CcEEEEeccChhhhhCcccccccccceeE
Q 001570 863 GCLGIVSTHLHGIFSLPLKIKNAAYKAMG 891 (1051)
Q Consensus 863 g~~vi~~TH~~el~~l~~~~~~i~~~~~~ 891 (1051)
|+|+|++||+++....+++...+.++.+.
T Consensus 598 ~~tvilvtH~~~~~~~ad~ii~l~~g~i~ 626 (1490)
T TIGR01271 598 NKTRILVTSKLEHLKKADKILLLHEGVCY 626 (1490)
T ss_pred CCeEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 89999999999988766655555555443
No 379
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.45 E-value=3e-13 Score=179.27 Aligned_cols=150 Identities=15% Similarity=0.067 Sum_probs=104.3
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH----------------h---h----hcceeecCCCCChhh
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL----------------L---G----ICGLMVPAESASIPY 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~----------------l---a----~~G~~vpa~~~~i~~ 793 (1051)
.+.+++|+|+ |++++|+||||||||||||+|+|... + . +...|++++...++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 3568899988 89999999999999999999999731 0 0 112366665322110
Q ss_pred --------------------------------HHHHHHhcCCCCCccC-----CccchhHHHHHHHHH-HHHcCCCcEEE
Q 001570 794 --------------------------------FDAIMLHMKSYDSPAD-----GKSSFQVEMSEIRSI-VTATTSRSLVL 835 (1051)
Q Consensus 794 --------------------------------~d~i~~~~~~~d~~~~-----~~stfs~e~~~~~~i-l~~a~~~sLlL 835 (1051)
.+.++..+|+.+..+. ....+|+|++|...| .+.+.+|++++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 1234556676554432 245688888875554 66789999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHc-CCcEEEEeccCh--hhhhCcccccccccceeE
Q 001570 836 IDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLH--GIFSLPLKIKNAAYKAMG 891 (1051)
Q Consensus 836 LDEp~~GlD~~~~~~l~~~ile~L~~-~g~~vi~~TH~~--el~~l~~~~~~i~~~~~~ 891 (1051)
|||||+|||+.....+. .+++.+.+ .|.|+|++||+. ++.++.++..-+..+++.
T Consensus 233 lDEPTsgLD~~~~~~i~-~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv 290 (1394)
T TIGR00956 233 WDNATRGLDSATALEFI-RALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI 290 (1394)
T ss_pred EeCCCCCcCHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE
Confidence 99999999999988884 55555654 589999999985 355566554444444443
No 380
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.44 E-value=3.5e-13 Score=164.93 Aligned_cols=150 Identities=15% Similarity=0.202 Sum_probs=109.6
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhcceeecCCCCChhh---
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAESASIPY--- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G~~vpa~~~~i~~--- 793 (1051)
.+.++++++. |++++|+||+||||||||++++|-.. +.++-.||+|+...+|.
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 3789999998 89999999999999999999999762 12233477776544322
Q ss_pred ------------------------HHHHHHhcCCCCCccCCc-----cchhHHH-HHHHHHHHHcCCCcEEEEcCCCCCC
Q 001570 794 ------------------------FDAIMLHMKSYDSPADGK-----SSFQVEM-SEIRSIVTATTSRSLVLIDEICRGT 843 (1051)
Q Consensus 794 ------------------------~d~i~~~~~~~d~~~~~~-----stfs~e~-~~~~~il~~a~~~sLlLLDEp~~Gl 843 (1051)
++.++..+|..+..+... ...|+|. ++++.++..+++|+++++||||+||
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 566777777764333322 2355555 4577778889999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEeccCh--hhhhCcccccccccceeE
Q 001570 844 ETAKGTCIAGSIIETLDNIGCLGIVSTHLH--GIFSLPLKIKNAAYKAMG 891 (1051)
Q Consensus 844 D~~~~~~l~~~ile~L~~~g~~vi~~TH~~--el~~l~~~~~~i~~~~~~ 891 (1051)
|...+..+ ..+++.+++.|+|||++=|.+ ++.++.++.--+..+.+.
T Consensus 202 DS~sA~~v-v~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~v 250 (613)
T KOG0061|consen 202 DSFSALQV-VQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVV 250 (613)
T ss_pred chhhHHHH-HHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEE
Confidence 99988888 566666776799999999986 555655544444444433
No 381
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.44 E-value=3.1e-13 Score=179.43 Aligned_cols=155 Identities=13% Similarity=0.068 Sum_probs=108.0
Q ss_pred CCcccccCC--CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh---------------------------
Q 001570 732 SPYWFDAAE--GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------------- 778 (1051)
Q Consensus 732 ~~~~~~~~~--~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la--------------------------- 778 (1051)
.++.+.|++ +.+|++++|| |+.++|+||+||||||++++|.++....
T Consensus 1169 ~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 (1466)
T PTZ00265 1169 MDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQ 1248 (1466)
T ss_pred EEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccc
Confidence 355666653 3579999999 8999999999999999999999987541
Q ss_pred --------------------------hc---------------------ceeecCCCCChh--hHH--------------
Q 001570 779 --------------------------IC---------------------GLMVPAESASIP--YFD-------------- 795 (1051)
Q Consensus 779 --------------------------~~---------------------G~~vpa~~~~i~--~~d-------------- 795 (1051)
.. -.+|||+...++ +.+
T Consensus 1249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI 1328 (1466)
T PTZ00265 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDV 1328 (1466)
T ss_pred ccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHH
Confidence 11 237788765432 111
Q ss_pred -HHHHhcCC-----------CCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH-c
Q 001570 796 -AIMLHMKS-----------YDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-N 861 (1051)
Q Consensus 796 -~i~~~~~~-----------~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~-~ 861 (1051)
......++ +..+..+-..+|+|++| ++.+.+.+.+|+++||||||++||+.....+...+ +.+. .
T Consensus 1329 ~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L-~~~~~~ 1407 (1466)
T PTZ00265 1329 KRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI-VDIKDK 1407 (1466)
T ss_pred HHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH-HHHhcc
Confidence 11111122 11222233568899888 55556779999999999999999997777774444 4454 3
Q ss_pred CCcEEEEeccChhhhhCccccccccc
Q 001570 862 IGCLGIVSTHLHGIFSLPLKIKNAAY 887 (1051)
Q Consensus 862 ~g~~vi~~TH~~el~~l~~~~~~i~~ 887 (1051)
.+.|+|++||.+...+.++....+.+
T Consensus 1408 ~~~TvIiIaHRlsti~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1408 ADKTIITIAHRIASIKRSDKIVVFNN 1433 (1466)
T ss_pred CCCEEEEEechHHHHHhCCEEEEEeC
Confidence 58999999999988877765444433
No 382
>PLN03140 ABC transporter G family member; Provisional
Probab=99.43 E-value=2.6e-13 Score=179.38 Aligned_cols=151 Identities=12% Similarity=0.058 Sum_probs=105.0
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh--------------------hcceeecCCCCChhh---
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG--------------------ICGLMVPAESASIPY--- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la--------------------~~G~~vpa~~~~i~~--- 793 (1051)
++.+++|+++ |++++|+||||||||||||+|+|..... +.-.||+++...++.
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 4578999998 8999999999999999999999986211 112356655322211
Q ss_pred -------------------------------------------------------HHHHHHhcCCCCCc-----cCCccc
Q 001570 794 -------------------------------------------------------FDAIMLHMKSYDSP-----ADGKSS 813 (1051)
Q Consensus 794 -------------------------------------------------------~d~i~~~~~~~d~~-----~~~~st 813 (1051)
.+.++..+|+.+.. ......
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 12344455554322 233467
Q ss_pred hhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCcEEEEeccCh--hhhhCcccccccccce
Q 001570 814 FQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD-NIGCLGIVSTHLH--GIFSLPLKIKNAAYKA 889 (1051)
Q Consensus 814 fs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~-~~g~~vi~~TH~~--el~~l~~~~~~i~~~~ 889 (1051)
+|+|+++... +...+.+|++++|||||+|||+.....+...+ +.+. ..|.|+|++||++ +..++.++..-+..++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~L-r~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCL-QQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHH-HHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 8888887544 45668999999999999999999999985444 4554 4689999999985 5556666555544555
Q ss_pred eEE
Q 001570 890 MGT 892 (1051)
Q Consensus 890 ~~~ 892 (1051)
+..
T Consensus 416 ivy 418 (1470)
T PLN03140 416 IVY 418 (1470)
T ss_pred EEE
Confidence 443
No 383
>PLN03232 ABC transporter C family member; Provisional
Probab=99.42 E-value=4.3e-13 Score=179.41 Aligned_cols=157 Identities=15% Similarity=0.125 Sum_probs=109.0
Q ss_pred CcccccCCC-ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhcceeecCC
Q 001570 733 PYWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAE 787 (1051)
Q Consensus 733 ~~~~~~~~~-~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G~~vpa~ 787 (1051)
++.+.|.++ ..|++|++| |+.++|+||+|||||||++++.++.. +.+.-.+|||+
T Consensus 1239 nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQd 1318 (1495)
T PLN03232 1239 DVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQS 1318 (1495)
T ss_pred EEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCC
Confidence 445566443 579999999 89999999999999999999999862 12234588988
Q ss_pred CCChhh----------------HHHHHHhcCC-----------CCCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCC
Q 001570 788 SASIPY----------------FDAIMLHMKS-----------YDSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEI 839 (1051)
Q Consensus 788 ~~~i~~----------------~d~i~~~~~~-----------~d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp 839 (1051)
+..++- +.+.+...++ +..+..+-+.+|+|++|+. .+.+.+.+|+++|||||
T Consensus 1319 p~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEA 1398 (1495)
T PLN03232 1319 PVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEA 1398 (1495)
T ss_pred CeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 644310 1122222222 2223344467999999854 45666899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeE
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 891 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~ 891 (1051)
|+++|+.....| ...++... .++|+|++||.++....+++.-.+..+++.
T Consensus 1399 TSaLD~~Te~~I-q~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVL~~G~iv 1448 (1495)
T PLN03232 1399 TASVDVRTDSLI-QRTIREEF-KSCTMLVIAHRLNTIIDCDKILVLSSGQVL 1448 (1495)
T ss_pred cccCCHHHHHHH-HHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 999999776666 44444332 479999999999887766655444444443
No 384
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=3.3e-13 Score=154.26 Aligned_cols=134 Identities=18% Similarity=0.208 Sum_probs=95.5
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH---hh---hcceeecCCCCC-------------------
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---LG---ICGLMVPAESAS------------------- 790 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~---la---~~G~~vpa~~~~------------------- 790 (1051)
|++.++++.++ |+.++++|+||+|||||||+|+--.+ .. -.|.++++....
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~ 170 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLA 170 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhc
Confidence 57778887666 99999999999999999999987210 00 012333321100
Q ss_pred ----hhhHHHHHHhcCCCCC-ccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCc
Q 001570 791 ----IPYFDAIMLHMKSYDS-PADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC 864 (1051)
Q Consensus 791 ----i~~~d~i~~~~~~~d~-~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~ 864 (1051)
..+.++++..+|..+. ..+...+||+|-+. ++.+.+...+|+|+||||||+.||... + ..+-++|...+.
T Consensus 171 ~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~a---v-~WLe~yL~t~~~ 246 (582)
T KOG0062|consen 171 GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVA---V-AWLENYLQTWKI 246 (582)
T ss_pred cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHH---H-HHHHHHHhhCCc
Confidence 0112235556666554 35677899999875 555566689999999999999999954 3 567788888889
Q ss_pred EEEEeccChhhhh
Q 001570 865 LGIVSTHLHGIFS 877 (1051)
Q Consensus 865 ~vi~~TH~~el~~ 877 (1051)
|+|+||||-.+.+
T Consensus 247 T~liVSHDr~FLn 259 (582)
T KOG0062|consen 247 TSLIVSHDRNFLN 259 (582)
T ss_pred eEEEEeccHHHHH
Confidence 9999999988765
No 385
>PLN03130 ABC transporter C family member; Provisional
Probab=99.40 E-value=7.8e-13 Score=177.24 Aligned_cols=159 Identities=12% Similarity=0.074 Sum_probs=111.3
Q ss_pred CcccccCCC-ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhcceeecCC
Q 001570 733 PYWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAE 787 (1051)
Q Consensus 733 ~~~~~~~~~-~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G~~vpa~ 787 (1051)
++.+.|.++ ..|++|++| |+.++|+|++|||||||++++.+++. +.+.-.+|||+
T Consensus 1242 nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQd 1321 (1622)
T PLN03130 1242 DVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQA 1321 (1622)
T ss_pred EEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCC
Confidence 445556543 579999999 89999999999999999999999861 22334588988
Q ss_pred CCChhh----------------HHHHHHhc-----------CCCCCccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCC
Q 001570 788 SASIPY----------------FDAIMLHM-----------KSYDSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEI 839 (1051)
Q Consensus 788 ~~~i~~----------------~d~i~~~~-----------~~~d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp 839 (1051)
+..+.- +.+.+... |.+..+..+-+.+|+|++|+ +.+.+.+.+|+++|||||
T Consensus 1322 p~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEA 1401 (1622)
T PLN03130 1322 PVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEA 1401 (1622)
T ss_pred CccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 654321 11122222 22223334446899999985 445666899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeEEE
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTE 893 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~~~ 893 (1051)
|+++|+..-..| ...++... .++|+|+++|.++....+++.-.+.++.+...
T Consensus 1402 TSaLD~~Te~~I-q~~I~~~~-~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~ 1453 (1622)
T PLN03130 1402 TAAVDVRTDALI-QKTIREEF-KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEF 1453 (1622)
T ss_pred CCCCCHHHHHHH-HHHHHHHC-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEe
Confidence 999999776666 44444433 47999999999998877766555555555433
No 386
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.40 E-value=4.5e-13 Score=142.65 Aligned_cols=134 Identities=16% Similarity=0.129 Sum_probs=83.6
Q ss_pred eeEee-ceEEEEEcCCCCCcchHHHHHHhhH----Hhhhc-----------------ceeecCCC--CChhhHH--HHHH
Q 001570 746 NTVDM-QSLFLLTGPNGGGKSSLLRSICAAS----LLGIC-----------------GLMVPAES--ASIPYFD--AIML 799 (1051)
Q Consensus 746 ~~isl-g~i~~ItGpNGsGKSTLLk~I~gl~----~la~~-----------------G~~vpa~~--~~i~~~d--~i~~ 799 (1051)
.+++| ..+++|+||||+|||||+++|.... ..... ..++++.. ..+.... .++.
T Consensus 16 ~~l~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~ 95 (204)
T cd03240 16 SEIEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILE 95 (204)
T ss_pred eEEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhh
Confidence 34566 3499999999999999999996433 11110 00122211 0000000 2222
Q ss_pred hcC------CCCCccCCccchhHHHHHH-------HHHHHHcCCCcEEEEcCCCCCCCHHHHH-HHHHHHHHHHHcC-Cc
Q 001570 800 HMK------SYDSPADGKSSFQVEMSEI-------RSIVTATTSRSLVLIDEICRGTETAKGT-CIAGSIIETLDNI-GC 864 (1051)
Q Consensus 800 ~~~------~~d~~~~~~stfs~e~~~~-------~~il~~a~~~sLlLLDEp~~GlD~~~~~-~l~~~ile~L~~~-g~ 864 (1051)
.+. ....+......+|.|+++. +.+.+.+.+|+++|+|||++++|+.... .+ ..++..+.+. +.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l-~~~l~~~~~~~~~ 174 (204)
T cd03240 96 NVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESL-AEIIEERKSQKNF 174 (204)
T ss_pred ceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHH-HHHHHHHHhccCC
Confidence 211 0112244567888888884 2334457899999999999999998877 67 4555555554 88
Q ss_pred EEEEeccChhhhhCcc
Q 001570 865 LGIVSTHLHGIFSLPL 880 (1051)
Q Consensus 865 ~vi~~TH~~el~~l~~ 880 (1051)
++|++||++++...++
T Consensus 175 ~iiiitH~~~~~~~~d 190 (204)
T cd03240 175 QLIVITHDEELVDAAD 190 (204)
T ss_pred EEEEEEecHHHHhhCC
Confidence 9999999998876544
No 387
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.40 E-value=1.8e-12 Score=137.32 Aligned_cols=133 Identities=9% Similarity=0.071 Sum_probs=86.1
Q ss_pred eEee-ceEEEEEcCCCCCcchHHHHHHhhHHh--------------hhcce------eecCCCCC----hhhH--HHHHH
Q 001570 747 TVDM-QSLFLLTGPNGGGKSSLLRSICAASLL--------------GICGL------MVPAESAS----IPYF--DAIML 799 (1051)
Q Consensus 747 ~isl-g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------a~~G~------~vpa~~~~----i~~~--d~i~~ 799 (1051)
+++| ..+.+|+||||+||||+|.+|....-- -+.|. .++..... .... +.+..
T Consensus 16 ~l~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 95 (198)
T cd03276 16 QIEFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARS 95 (198)
T ss_pred EEecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHH
Confidence 3455 357899999999999999999754310 00110 11111000 1101 22222
Q ss_pred hcCCCCCccCCccchhHHHHHHHHHHH-H----cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHc--CCcEEEEeccC
Q 001570 800 HMKSYDSPADGKSSFQVEMSEIRSIVT-A----TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN--IGCLGIVSTHL 872 (1051)
Q Consensus 800 ~~~~~d~~~~~~stfs~e~~~~~~il~-~----a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~--~g~~vi~~TH~ 872 (1051)
.+...+.......++|.++++...+.. . +.+|+++|||||++|+|+.....+...+.+...+ .+.++|++||+
T Consensus 96 ~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~ 175 (198)
T cd03276 96 FLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQD 175 (198)
T ss_pred HhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 223245556677899999998665533 3 4899999999999999999888886656655444 24689999999
Q ss_pred hhhhhCc
Q 001570 873 HGIFSLP 879 (1051)
Q Consensus 873 ~el~~l~ 879 (1051)
++.+...
T Consensus 176 ~~~i~~~ 182 (198)
T cd03276 176 ISGLASS 182 (198)
T ss_pred ccccccc
Confidence 9876543
No 388
>PTZ00243 ABC transporter; Provisional
Probab=99.40 E-value=8e-13 Score=176.86 Aligned_cols=157 Identities=18% Similarity=0.135 Sum_probs=108.9
Q ss_pred CcccccCCC-ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhcceeecCC
Q 001570 733 PYWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAE 787 (1051)
Q Consensus 733 ~~~~~~~~~-~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G~~vpa~ 787 (1051)
++.+.|.++ ..|++|++| |+.++|+|++|||||||++++.+++. +.+.-++|||+
T Consensus 1313 nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQd 1392 (1560)
T PTZ00243 1313 GVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQD 1392 (1560)
T ss_pred EEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCC
Confidence 445566544 459999999 89999999999999999999999862 22334589998
Q ss_pred CCChhh----------------HHHHHHhcCCCC-----------CccCCccchhHHHHHHHHH-HHHcCC-CcEEEEcC
Q 001570 788 SASIPY----------------FDAIMLHMKSYD-----------SPADGKSSFQVEMSEIRSI-VTATTS-RSLVLIDE 838 (1051)
Q Consensus 788 ~~~i~~----------------~d~i~~~~~~~d-----------~~~~~~stfs~e~~~~~~i-l~~a~~-~sLlLLDE 838 (1051)
...+.- +...+...++.+ .+..+-+.+|+|++|+..+ .+.+.+ |++|||||
T Consensus 1393 p~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDE 1472 (1560)
T PTZ00243 1393 PVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDE 1472 (1560)
T ss_pred CccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 654321 112233333322 2223336799999986554 555664 89999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeE
Q 001570 839 ICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 891 (1051)
Q Consensus 839 p~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~ 891 (1051)
||+++|+..-..|...+ +... .++|+|+++|.++....++....+.++.+.
T Consensus 1473 ATSaLD~~te~~Iq~~L-~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1473 ATANIDPALDRQIQATV-MSAF-SAYTVITIAHRLHTVAQYDKIIVMDHGAVA 1523 (1560)
T ss_pred CCccCCHHHHHHHHHHH-HHHC-CCCEEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 99999997777774444 4332 479999999999887776655544444443
No 389
>PLN03232 ABC transporter C family member; Provisional
Probab=99.40 E-value=4.9e-12 Score=169.41 Aligned_cols=149 Identities=11% Similarity=0.084 Sum_probs=105.8
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhh--------cceeecCCCCChh--h-------------
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------CGLMVPAESASIP--Y------------- 793 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~--------~G~~vpa~~~~i~--~------------- 793 (1051)
++++++|++| |+.++|+||+|||||||+++|+|...... .-.||||+...+. .
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e 708 (1495)
T PLN03232 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESE 708 (1495)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHH
Confidence 4679999999 89999999999999999999999874322 2347888754321 1
Q ss_pred -HHHHHHhcCCC-----------CCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Q 001570 794 -FDAIMLHMKSY-----------DSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 860 (1051)
Q Consensus 794 -~d~i~~~~~~~-----------d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~ 860 (1051)
+.+++...+.. -.+..+-..+|+|++| ++.+.+...+|+++||||||+++|+..+..+...++..+.
T Consensus 709 ~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l 788 (1495)
T PLN03232 709 RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL 788 (1495)
T ss_pred HHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh
Confidence 11222222211 1222333478999888 4555667899999999999999999988888777665443
Q ss_pred cCCcEEEEeccChhhhhCccccccccccee
Q 001570 861 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 890 (1051)
Q Consensus 861 ~~g~~vi~~TH~~el~~l~~~~~~i~~~~~ 890 (1051)
.++|+|++||..+....++....+.++.+
T Consensus 789 -~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i 817 (1495)
T PLN03232 789 -KGKTRVLVTNQLHFLPLMDRIILVSEGMI 817 (1495)
T ss_pred -cCCEEEEEECChhhHHhCCEEEEEeCCEE
Confidence 57899999999988776665444444443
No 390
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.40 E-value=7.9e-13 Score=177.18 Aligned_cols=149 Identities=15% Similarity=0.081 Sum_probs=104.1
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh-------hcceeecCCCCChh--h--------------H
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESASIP--Y--------------F 794 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la-------~~G~~vpa~~~~i~--~--------------~ 794 (1051)
+++++|++| |++++|+||||||||||+++|+|..... ....||||+...+. . .
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 730 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYY 730 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHH
Confidence 579999999 8999999999999999999999986321 11247888753221 1 1
Q ss_pred HHHHHhc-----------CCCCCccCCccchhHHHHHHHH-HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH-Hc
Q 001570 795 DAIMLHM-----------KSYDSPADGKSSFQVEMSEIRS-IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL-DN 861 (1051)
Q Consensus 795 d~i~~~~-----------~~~d~~~~~~stfs~e~~~~~~-il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L-~~ 861 (1051)
+++.... |....+...-.++|+|++|... +.+...+|+++|||||++++|+.....+...+.+.. ..
T Consensus 731 ~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~ 810 (1522)
T TIGR00957 731 QQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL 810 (1522)
T ss_pred HHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhh
Confidence 1111111 1111233445689999988544 566689999999999999999999888877776421 12
Q ss_pred CCcEEEEeccChhhhhCccccccccccee
Q 001570 862 IGCLGIVSTHLHGIFSLPLKIKNAAYKAM 890 (1051)
Q Consensus 862 ~g~~vi~~TH~~el~~l~~~~~~i~~~~~ 890 (1051)
.++|+|++||+.+....+++...+.++.+
T Consensus 811 ~~~tvIlvTH~~~~l~~~D~ii~l~~G~i 839 (1522)
T TIGR00957 811 KNKTRILVTHGISYLPQVDVIIVMSGGKI 839 (1522)
T ss_pred cCCEEEEEeCChhhhhhCCEEEEecCCeE
Confidence 47899999999988776655444444433
No 391
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.39 E-value=1.6e-12 Score=142.96 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=56.5
Q ss_pred cCCccchhHHHHHHHHHHHH-c----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccc
Q 001570 808 ADGKSSFQVEMSEIRSIVTA-T----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 882 (1051)
Q Consensus 808 ~~~~stfs~e~~~~~~il~~-a----~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~ 882 (1051)
......+|+++++...+... + .+|+++|+|||++|+|+.....+.. ++..+. .|.++|++||+.+..+.++..
T Consensus 161 ~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~-~l~~~~-~g~~ii~iSH~~~~~~~~d~v 238 (251)
T cd03273 161 KESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGR-MIKTHF-KGSQFIVVSLKEGMFNNANVL 238 (251)
T ss_pred cccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHc-CCCEEEEEECCHHHHHhCCEE
Confidence 35567889999886655433 2 5789999999999999988888844 445554 488999999998888876544
Q ss_pred c
Q 001570 883 K 883 (1051)
Q Consensus 883 ~ 883 (1051)
.
T Consensus 239 ~ 239 (251)
T cd03273 239 F 239 (251)
T ss_pred E
Confidence 3
No 392
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=99.39 E-value=1.1e-12 Score=165.10 Aligned_cols=197 Identities=19% Similarity=0.167 Sum_probs=155.6
Q ss_pred Cccccc--e-eecHHhhhccCCCCCCCccceEecCCCccCCCHHHHHHhhhcCCc-----ccHHHHHHHHHhHhhhhhcC
Q 001570 365 ENRPRP--L-HLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPA-----YEIASTIQAICKLMSKVTCS 436 (1051)
Q Consensus 365 ~~~~~~--L-yLd~~Tq~ell~~~~~~sLl~v~l~~t~t~mg~r~LR~llL~P~~-----~sl~~~I~~r~t~mg~~l~~ 436 (1051)
...+++ + || ..||.+.+.+ .+.+..+..+++|.||..|+++|+|+++. +||++.+|+|.|+||+
T Consensus 215 ~~~a~g~ll~Yl-~~~~~~~~~~---~~~~~~~~~~~~m~lD~~t~~~LEl~~~~~~~~~gSL~~~ld~t~T~~G~---- 286 (840)
T TIGR01070 215 GLTAAGCLLQYA-KRTQRTALPH---LQPVRLYELQDFMQLDAATRRNLELTENLRGGKQNTLFSVLDETKTAMGS---- 286 (840)
T ss_pred HHHHHHHHHHHH-HHhChhhhhh---CCCcEEECCCCEEEeCHHHHHhccCCccCCCCCCCcHHHHHhhcCCHHHH----
Confidence 445555 4 99 7788765555 45567777889999999999999999975 5999999999999999
Q ss_pred CCcHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhhcChHHHHHHHhccCchhhcccchhhHHHhhhHhHHHHHHHHHhhh
Q 001570 437 IPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMIS 516 (1051)
Q Consensus 437 i~dlerL~~~L~~p~a~~~dl~~I~~rL~aV~~l~~~~~l~~~L~~~l~~~~~~~g~~~dlerl~~~~~~~~~~i~~~i~ 516 (1051)
|+|++||.+| ++|...|++||++|++|.+++.++..++..|..++ |++|+++++......+++++.
T Consensus 287 ----RlLr~wl~~P---l~d~~~I~~Rld~Ve~l~~~~~l~~~l~~~L~~i~-------Dlerll~ri~~~~~~~~dl~~ 352 (840)
T TIGR01070 287 ----RLLKRWLHRP---LRDREVLEARQDTVEVLLRHFFLREGLRPLLKEVG-------DLERLAARVALGNARPRDLAR 352 (840)
T ss_pred ----HHHHHHhhCC---CCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCc-------CHHHHHHHHHcCCCCHHHHHH
Confidence 9999999999 99999999999999999999999999999998877 999999999988888998888
Q ss_pred ccCCchhhhccCCCCCh--hHHhhcchhhhhhhhhcccchhHHHHHHHHHHHHHhhccCchhHHhhhhccccCCCCCchh
Q 001570 517 LDGESDQKICSYDNIPS--EFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGE 594 (1051)
Q Consensus 517 l~~e~p~~~~~~~~I~~--~f~~~lds~~~g~V~~~~~~e~l~elr~l~~~L~~aI~ed~lpi~~re~~~ir~tgg~~~e 594 (1051)
+ ...+..++. .++...+++.... +.+.++++.++.+.|..+|.++. |...+++..|+ .|.+.+
T Consensus 353 l-------~~~l~~~~~l~~~l~~~~~~~l~~-----l~~~l~~~~~l~~~i~~~i~~~~-~~~~~~~~~I~--~g~~~~ 417 (840)
T TIGR01070 353 L-------RTSLEQLPELRALLEELEGPTLQA-----LAAQIDDFSELLELLEAALIENP-PLVVRDGGLIR--EGYDEE 417 (840)
T ss_pred H-------HHHHHHHHHHHHHHHhcCcHHHHH-----HHHhcccHHHHHHHHHHHHhcCC-ccccccCCeeC--CCCCHH
Confidence 6 444444443 2333222222222 22344567788888899998887 77777778887 778888
Q ss_pred hhhh
Q 001570 595 ILYA 598 (1051)
Q Consensus 595 I~y~ 598 (1051)
+.-.
T Consensus 418 Ld~l 421 (840)
T TIGR01070 418 LDEL 421 (840)
T ss_pred HHHH
Confidence 6443
No 393
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.39 E-value=1.8e-12 Score=142.17 Aligned_cols=129 Identities=15% Similarity=0.140 Sum_probs=86.8
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhh-------------hcc---------e-----eecCC-------------C--
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLG-------------ICG---------L-----MVPAE-------------S-- 788 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la-------------~~G---------~-----~vpa~-------------~-- 788 (1051)
..+.+|+|||||||||++.+|+++.... +.| . |..+. .
T Consensus 22 ~~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~ 101 (247)
T cd03275 22 DRFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSS 101 (247)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceE
Confidence 4689999999999999999999886210 000 0 11110 0
Q ss_pred -------CChhhHHHHHHhcCCCCC-------------c---------cCCccchhHHHHHHHHHHHH-c----CCCcEE
Q 001570 789 -------ASIPYFDAIMLHMKSYDS-------------P---------ADGKSSFQVEMSEIRSIVTA-T----TSRSLV 834 (1051)
Q Consensus 789 -------~~i~~~d~i~~~~~~~d~-------------~---------~~~~stfs~e~~~~~~il~~-a----~~~sLl 834 (1051)
.....+++++..++.... + ......+|+++++...+... + .+|+++
T Consensus 102 ~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~l 181 (247)
T cd03275 102 YRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFF 181 (247)
T ss_pred EEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEE
Confidence 001224567777776421 1 11226788888886555443 3 358999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcc
Q 001570 835 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 880 (1051)
Q Consensus 835 LLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~ 880 (1051)
|||||++|+|+.....+.. ++..+.+.|.++|++||+.++...++
T Consensus 182 llDEPt~~LD~~~~~~l~~-~i~~~~~~g~~vi~isH~~~~~~~~d 226 (247)
T cd03275 182 VLDEVDAALDNTNVGKVAS-YIREQAGPNFQFIVISLKEEFFSKAD 226 (247)
T ss_pred EEecccccCCHHHHHHHHH-HHHHhccCCcEEEEEECCHHHHhhCC
Confidence 9999999999988888854 55556666899999999988876654
No 394
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.39 E-value=1.1e-12 Score=175.33 Aligned_cols=151 Identities=15% Similarity=0.092 Sum_probs=105.4
Q ss_pred CcccccCC-CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH-------------------hhhcceeecCCC
Q 001570 733 PYWFDAAE-GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-------------------LGICGLMVPAES 788 (1051)
Q Consensus 733 ~~~~~~~~-~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~-------------------la~~G~~vpa~~ 788 (1051)
++.+.|.+ ...+++|++| |+.++|+|++|||||||++++.|+.. +.+.-.+|||++
T Consensus 1222 nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp 1301 (1490)
T TIGR01271 1222 GLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKV 1301 (1490)
T ss_pred EEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCC
Confidence 44455553 4689999999 89999999999999999999999862 122234788886
Q ss_pred CChhh----------------HHHHHHhcCCC-----------CCccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCCC
Q 001570 789 ASIPY----------------FDAIMLHMKSY-----------DSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEIC 840 (1051)
Q Consensus 789 ~~i~~----------------~d~i~~~~~~~-----------d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~ 840 (1051)
..++- +...+...++. ..+..+-..||+|++|+ +.+.+.+.+|++|||||||
T Consensus 1302 ~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaT 1381 (1490)
T TIGR01271 1302 FIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPS 1381 (1490)
T ss_pred ccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 54421 11233333332 22223334789999885 4556668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCccccccc
Q 001570 841 RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNA 885 (1051)
Q Consensus 841 ~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i 885 (1051)
+++|+.....|...+.+.. .++|+|++||.++....++..-.+
T Consensus 1382 S~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~~DrIlvL 1424 (1490)
T TIGR01271 1382 AHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEALLECQQFLVI 1424 (1490)
T ss_pred ccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEEE
Confidence 9999977666644444432 479999999998877665544333
No 395
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.39 E-value=1e-12 Score=176.13 Aligned_cols=156 Identities=15% Similarity=0.123 Sum_probs=107.4
Q ss_pred CcccccCCC-ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhcceeecCC
Q 001570 733 PYWFDAAEG-SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAE 787 (1051)
Q Consensus 733 ~~~~~~~~~-~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G~~vpa~ 787 (1051)
++.+.|.++ ..|++|+|| |+.++|+|++|||||||++++.++.. +.+.-.+|||+
T Consensus 1289 nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQd 1368 (1522)
T TIGR00957 1289 NYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQD 1368 (1522)
T ss_pred EEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCC
Confidence 445556543 579999999 89999999999999999999999862 22234478988
Q ss_pred CCChhh----------------HHHHHHhcCC-----------CCCccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCC
Q 001570 788 SASIPY----------------FDAIMLHMKS-----------YDSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEI 839 (1051)
Q Consensus 788 ~~~i~~----------------~d~i~~~~~~-----------~d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp 839 (1051)
+..++- +.+.+...++ +..+..+-+.+|+|++|+ +.+.+.+.+|+++|||||
T Consensus 1369 p~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEa 1448 (1522)
T TIGR00957 1369 PVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEA 1448 (1522)
T ss_pred CcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 654310 1112222222 222233346799999884 445666899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCccccccccccee
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 890 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~ 890 (1051)
|+++|+.....| ...++... .++|+|+++|..+....+++.-.+.++.+
T Consensus 1449 TSalD~~Te~~I-q~~l~~~~-~~~TvI~IAHRl~ti~~~DrIlVld~G~I 1497 (1522)
T TIGR00957 1449 TAAVDLETDNLI-QSTIRTQF-EDCTVLTIAHRLNTIMDYTRVIVLDKGEV 1497 (1522)
T ss_pred cccCCHHHHHHH-HHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 999999776666 44444332 47999999999988776655444444443
No 396
>PLN03130 ABC transporter C family member; Provisional
Probab=99.37 E-value=2.2e-12 Score=173.04 Aligned_cols=149 Identities=12% Similarity=0.106 Sum_probs=106.0
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhh--------cceeecCCCCChh----------------
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------CGLMVPAESASIP---------------- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~--------~G~~vpa~~~~i~---------------- 792 (1051)
++++++|++| |+.++|+||+|||||||+++|.|...... .-.||||++-.+.
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e 708 (1622)
T PLN03130 629 ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPE 708 (1622)
T ss_pred CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHH
Confidence 3679999999 89999999999999999999999875433 2347888754321
Q ss_pred hHHHHHHhcC-----------CCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Q 001570 793 YFDAIMLHMK-----------SYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 860 (1051)
Q Consensus 793 ~~d~i~~~~~-----------~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~ 860 (1051)
.+++++...+ ..-.+..+-.++|+|++| ++.+.+...+|+++|||||++++|+..+..+...++..+.
T Consensus 709 ~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l 788 (1622)
T PLN03130 709 RYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL 788 (1622)
T ss_pred HHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh
Confidence 1122222222 122222334578999888 4555667899999999999999999888888666665443
Q ss_pred cCCcEEEEeccChhhhhCccccccccccee
Q 001570 861 NIGCLGIVSTHLHGIFSLPLKIKNAAYKAM 890 (1051)
Q Consensus 861 ~~g~~vi~~TH~~el~~l~~~~~~i~~~~~ 890 (1051)
.++|+|++||..+....++....+.++.+
T Consensus 789 -~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 789 -RGKTRVLVTNQLHFLSQVDRIILVHEGMI 817 (1622)
T ss_pred -cCCEEEEEECCHhHHHhCCEEEEEeCCEE
Confidence 47999999999988777665444444433
No 397
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.37 E-value=4.1e-13 Score=134.18 Aligned_cols=125 Identities=17% Similarity=0.241 Sum_probs=93.2
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHH-------------------hhhcceeecCC-------------------CCChh
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASL-------------------LGICGLMVPAE-------------------SASIP 792 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~-------------------la~~G~~vpa~-------------------~~~i~ 792 (1051)
|+++-++||||||||||+-.++|++. +++.-.|..+. +..-.
T Consensus 25 Ge~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~ 104 (248)
T COG4138 25 GEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTE 104 (248)
T ss_pred ceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHH
Confidence 89999999999999999999999861 11111122111 11123
Q ss_pred hHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHH------cC--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCc
Q 001570 793 YFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA------TT--SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC 864 (1051)
Q Consensus 793 ~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~------a~--~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~ 864 (1051)
.++.|...+++.|.+.+..+.+|+|.-|...+.+. -. ...|+|+|||.+++|.....++ ..+++++...|.
T Consensus 105 ~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL-drll~~~c~~G~ 183 (248)
T COG4138 105 LLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL-DRLLSALCQQGL 183 (248)
T ss_pred HHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH-HHHHHHHHhCCc
Confidence 35667777888999988899999887765544332 12 3379999999999999766666 899999999999
Q ss_pred EEEEeccChhhh
Q 001570 865 LGIVSTHLHGIF 876 (1051)
Q Consensus 865 ~vi~~TH~~el~ 876 (1051)
+|||++||.+-.
T Consensus 184 ~vims~HDLNhT 195 (248)
T COG4138 184 AIVMSSHDLNHT 195 (248)
T ss_pred EEEEeccchhhH
Confidence 999999997754
No 398
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.36 E-value=3.6e-12 Score=141.90 Aligned_cols=139 Identities=16% Similarity=0.097 Sum_probs=104.4
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-----------------------------hhcceeecC
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-----------------------------GICGLMVPA 786 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-----------------------------a~~G~~vpa 786 (1051)
+...+++++|| |+.++|+|.+|||||...+.|++++.- +.-..+++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 44678999999 899999999999999999999998710 111236777
Q ss_pred CCCC-h-hh-------------------------HHHHHHhcCCCCC---ccCCccchhHHHHHHHH-HHHHcCCCcEEE
Q 001570 787 ESAS-I-PY-------------------------FDAIMLHMKSYDS---PADGKSSFQVEMSEIRS-IVTATTSRSLVL 835 (1051)
Q Consensus 787 ~~~~-i-~~-------------------------~d~i~~~~~~~d~---~~~~~stfs~e~~~~~~-il~~a~~~sLlL 835 (1051)
++.. + |. .-+++..+|+.+- +......+|+|++|... +++.+.+|+|+|
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLI 180 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLI 180 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEe
Confidence 6532 1 11 1235556666543 34556788999988554 478899999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 836 IDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 836 LDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
-||||..||..-++.|...+.+.-++.|+.++|+|||+.++..
T Consensus 181 ADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~ 223 (534)
T COG4172 181 ADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRK 223 (534)
T ss_pred ecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHH
Confidence 9999999999999998555544445679999999999998864
No 399
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=9.8e-13 Score=131.03 Aligned_cols=135 Identities=21% Similarity=0.237 Sum_probs=98.1
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh-------hhcce---------------------ee-----
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL-------GICGL---------------------MV----- 784 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l-------a~~G~---------------------~v----- 784 (1051)
-+|++++|| |+++++-||+|+||||+||++-+.+.. .+.|. ||
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence 368899999 899999999999999999999887621 11121 11
Q ss_pred --cCCCCC----hh-------------hHHHHHHhcCCCCCc-cCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCC
Q 001570 785 --PAESAS----IP-------------YFDAIMLHMKSYDSP-ADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGT 843 (1051)
Q Consensus 785 --pa~~~~----i~-------------~~d~i~~~~~~~d~~-~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~Gl 843 (1051)
|.-++. -| ....+++++++.+.+ .-..+|||+|.+|...| ...+.+-.++||||||+.|
T Consensus 104 viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasL 183 (235)
T COG4778 104 VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183 (235)
T ss_pred hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccc
Confidence 111110 00 023466676665543 45678999998887666 5568999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh
Q 001570 844 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 844 D~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
|..++..+ ..++..-+..|+.+|=+-||.+.-+
T Consensus 184 Da~Nr~vV-veli~e~Ka~GaAlvGIFHDeevre 216 (235)
T COG4778 184 DATNRAVV-VELIREAKARGAALVGIFHDEEVRE 216 (235)
T ss_pred cccchHHH-HHHHHHHHhcCceEEEeeccHHHHH
Confidence 99887777 5555666778999999999987643
No 400
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=2e-12 Score=154.09 Aligned_cols=150 Identities=14% Similarity=0.122 Sum_probs=103.3
Q ss_pred CcccccCC--CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhcceeecC
Q 001570 733 PYWFDAAE--GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPA 786 (1051)
Q Consensus 733 ~~~~~~~~--~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G~~vpa 786 (1051)
+++|.|+. +..|++|++| |++++|+||||+||||+...+-.+.. +.+...+|-|
T Consensus 470 ~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~Q 549 (716)
T KOG0058|consen 470 DVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQ 549 (716)
T ss_pred EeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeec
Confidence 55666654 4679999999 99999999999999999999988761 2223336666
Q ss_pred CCCChh--hHHH------------------------HHHhc--CCCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEEc
Q 001570 787 ESASIP--YFDA------------------------IMLHM--KSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLID 837 (1051)
Q Consensus 787 ~~~~i~--~~d~------------------------i~~~~--~~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLD 837 (1051)
++..+. +.++ ....+ |.+-.....=+.+|+|++| ++.+.+...+|.++|||
T Consensus 550 EPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILD 629 (716)
T KOG0058|consen 550 EPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILD 629 (716)
T ss_pred cceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEe
Confidence 654431 1111 11222 1122223334588999988 56667779999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccc
Q 001570 838 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKN 884 (1051)
Q Consensus 838 Ep~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~ 884 (1051)
|.||+||.+.-..+ ...++.+.+ +.|||++.|-+.-.+.++...-
T Consensus 630 EATSALDaeSE~lV-q~aL~~~~~-~rTVlvIAHRLSTV~~Ad~Ivv 674 (716)
T KOG0058|consen 630 EATSALDAESEYLV-QEALDRLMQ-GRTVLVIAHRLSTVRHADQIVV 674 (716)
T ss_pred chhhhcchhhHHHH-HHHHHHhhc-CCeEEEEehhhhHhhhccEEEE
Confidence 99999999554444 555555543 5899999998888777664333
No 401
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.34 E-value=1.7e-12 Score=128.74 Aligned_cols=97 Identities=21% Similarity=0.249 Sum_probs=69.6
Q ss_pred eeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------------------hhcceeecCCCCChh--------
Q 001570 745 HNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------------------GICGLMVPAESASIP-------- 792 (1051)
Q Consensus 745 l~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------------------a~~G~~vpa~~~~i~-------- 792 (1051)
++++++ |++++|+||||||||||+++|+|.... .+...++|+....++
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 467777 899999999999999999999998732 222335666532211
Q ss_pred ---hHHHHHHhcCCCCCccCCc----cchhHHHHHH-HHHHHHcCCCcEEEEcCCCC
Q 001570 793 ---YFDAIMLHMKSYDSPADGK----SSFQVEMSEI-RSIVTATTSRSLVLIDEICR 841 (1051)
Q Consensus 793 ---~~d~i~~~~~~~d~~~~~~----stfs~e~~~~-~~il~~a~~~sLlLLDEp~~ 841 (1051)
.+..++..++..+...... ..+|+++++. ..+.+.+.+|+++||||||+
T Consensus 81 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 2344666666554333444 8999998884 44566789999999999996
No 402
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=99.34 E-value=2.5e-12 Score=162.69 Aligned_cols=190 Identities=21% Similarity=0.232 Sum_probs=149.9
Q ss_pred eecHHhhhccCCCCCCCccceEecCCCccCCCHHHHHHhhhcCCc-----ccHHHHHHHHHhHhhhhhcCCCcHHHHHHH
Q 001570 372 HLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPA-----YEIASTIQAICKLMSKVTCSIPEFTCLVKL 446 (1051)
Q Consensus 372 yLd~~Tq~ell~~~~~~sLl~v~l~~t~t~mg~r~LR~llL~P~~-----~sl~~~I~~r~t~mg~~l~~i~dlerL~~~ 446 (1051)
|| ..+|...+++ .+.+..+....+|.||..++++|+|+++. +||++.+++|.|+||. |+|++|
T Consensus 239 Yl-~~~~~~~~~~---~~~~~~~~~~~~m~lD~~tl~~Lei~~~~~~~~~gSL~~~ld~t~T~~G~--------RlLr~w 306 (854)
T PRK05399 239 YL-KETQKRSLPH---LRSPKRYEESDYLILDAATRRNLELTENLRGGRKNSLLSVLDRTVTAMGG--------RLLRRW 306 (854)
T ss_pred HH-HHhchhhhhc---cCCCEEECCCCEEEcCHHHHHhccCCccCCCCCCCcHHHHhccCCCcHHH--------HHHHHH
Confidence 88 6777655554 45566667789999999999999999985 4999999999999999 999999
Q ss_pred HhcCCCCcccHHHHHHHHHHHHHhhcChHHHHHHHhccCchhhcccchhhHHHhhhHhHHHHHHHHHhhhccCCchhhhc
Q 001570 447 LELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKIC 526 (1051)
Q Consensus 447 L~~p~a~~~dl~~I~~rL~aV~~l~~~~~l~~~L~~~l~~~~~~~g~~~dlerl~~~~~~~~~~i~~~i~l~~e~p~~~~ 526 (1051)
|.+| ++|...|++||++|++|.+++.++..++..|..++ |++|++.++......+++++.+ ..
T Consensus 307 l~~P---l~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~L~~i~-------Dlerll~ri~~~~~~~~dl~~l-------~~ 369 (854)
T PRK05399 307 LHRP---LRDREAIEARLDAVEELLEDPLLREDLRELLKGVY-------DLERLLSRIALGRANPRDLAAL-------RD 369 (854)
T ss_pred HhCc---CCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCC-------CHHHHHHHHHhcCCCHHHHHHH-------HH
Confidence 9999 99999999999999999999999999999999877 9999999999988889988886 44
Q ss_pred cCCCCCh--hHHhhcchhhhhhhhhcccchhHHHHHHHHHHHHHhhccCchhHHhhhhccccCCCCCchhhhhh
Q 001570 527 SYDNIPS--EFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYA 598 (1051)
Q Consensus 527 ~~~~I~~--~f~~~lds~~~g~V~~~~~~e~l~elr~l~~~L~~aI~ed~lpi~~re~~~ir~tgg~~~eI~y~ 598 (1051)
.+..++. .++....++.... +.+.++.+.++.+.|..+|.++. |...+++..|+ .|.+.++.-.
T Consensus 370 ~l~~~~~l~~~l~~~~~~~l~~-----l~~~l~~~~~l~~~i~~~i~~~~-~~~~~~~~~i~--~g~~~~Ld~l 435 (854)
T PRK05399 370 SLEALPELKELLAELDSPLLAE-----LAEQLDPLEELADLLERAIVEEP-PLLIRDGGVIA--DGYDAELDEL 435 (854)
T ss_pred HHHHHHHHHHHHHhcCcHHHHH-----HHhhcccHHHHHHHHHHHHccCC-chhcccCCEEC--CCCCHHHHHH
Confidence 4444433 2222222222222 12234567788888899998887 77667777787 7788876443
No 403
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.33 E-value=3.5e-12 Score=144.03 Aligned_cols=145 Identities=19% Similarity=0.221 Sum_probs=99.8
Q ss_pred CcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhH---------------------HhhhcceeecCC
Q 001570 733 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS---------------------LLGICGLMVPAE 787 (1051)
Q Consensus 733 ~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~---------------------~la~~G~~vpa~ 787 (1051)
++.+.++.+++|+.|+|| |+.++|+||+|+||||+||.+-.+. +..++| .|||+
T Consensus 542 nvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG-VVPQD 620 (790)
T KOG0056|consen 542 NVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG-VVPQD 620 (790)
T ss_pred EeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC-cccCc
Confidence 566788889999999999 8999999999999999999998775 123444 68887
Q ss_pred CCChhh-----------------------HHHHHHhc-CCCC----C-ccCCccchhHHHHH-HHHHHHHcCCCcEEEEc
Q 001570 788 SASIPY-----------------------FDAIMLHM-KSYD----S-PADGKSSFQVEMSE-IRSIVTATTSRSLVLID 837 (1051)
Q Consensus 788 ~~~i~~-----------------------~d~i~~~~-~~~d----~-~~~~~stfs~e~~~-~~~il~~a~~~sLlLLD 837 (1051)
...+.. .-.|.+++ +..+ . -++++ .+|+|.+| ++.+......|++++||
T Consensus 621 tvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGL-kLSGGEKQRVAiARtiLK~P~iIlLD 699 (790)
T KOG0056|consen 621 TVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGL-KLSGGEKQRVAIARTILKAPSIILLD 699 (790)
T ss_pred ceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccc-ccCCcchhhHHHHHHHhcCCcEEEEc
Confidence 644311 01122221 1100 0 12233 34555555 55556668999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCccc
Q 001570 838 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 881 (1051)
Q Consensus 838 Ep~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~ 881 (1051)
|.||+||+..-.+| ++-++.+.. +.|.|++.|-+.-.-.++.
T Consensus 700 EATSALDT~tER~I-QaaL~rlca-~RTtIVvAHRLSTivnAD~ 741 (790)
T KOG0056|consen 700 EATSALDTNTERAI-QAALARLCA-NRTTIVVAHRLSTIVNADL 741 (790)
T ss_pred chhhhcCCccHHHH-HHHHHHHhc-CCceEEEeeeehheecccE
Confidence 99999999888888 666666664 5677888896554444443
No 404
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.31 E-value=1.1e-11 Score=138.11 Aligned_cols=136 Identities=14% Similarity=0.098 Sum_probs=98.9
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh----------------------hhcceeecCCCC-Ch-h-
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESA-SI-P- 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l----------------------a~~G~~vpa~~~-~i-~- 792 (1051)
..+.+++|| |+.++|+|.+|||||||=+++..++.. ..--..|+|++. .+ |
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR 379 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence 457899998 899999999999999999999888611 011113444321 00 0
Q ss_pred -------------------------hHHHHHHhcCCCC-CccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCH
Q 001570 793 -------------------------YFDAIMLHMKSYD-SPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTET 845 (1051)
Q Consensus 793 -------------------------~~d~i~~~~~~~d-~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~ 845 (1051)
.+-..+..+|+.. ...+....||+|++| ++.+.+.+.+|++|+||||||.||-
T Consensus 380 mtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~ 459 (534)
T COG4172 380 MTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR 459 (534)
T ss_pred cCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence 0122444556543 345677899999998 5555677999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-cCCcEEEEeccChhhhhC
Q 001570 846 AKGTCIAGSIIETLD-NIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 846 ~~~~~l~~~ile~L~-~~g~~vi~~TH~~el~~l 878 (1051)
.-+..+ ..+++.|. +.|.+-+|+|||+..+..
T Consensus 460 SVQaQv-v~LLr~LQ~k~~LsYLFISHDL~VvrA 492 (534)
T COG4172 460 SVQAQV-LDLLRDLQQKHGLSYLFISHDLAVVRA 492 (534)
T ss_pred HHHHHH-HHHHHHHHHHhCCeEEEEeccHHHHHH
Confidence 888888 45555564 578999999999988763
No 405
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=4.5e-12 Score=141.15 Aligned_cols=145 Identities=17% Similarity=0.183 Sum_probs=94.7
Q ss_pred cccCCcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh----------hcceeec-------CC
Q 001570 729 NGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------ICGLMVP-------AE 787 (1051)
Q Consensus 729 ~~~~~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la----------~~G~~vp-------a~ 787 (1051)
-|+|.+.|.+.+.++.+..++| .+.++|+||||.||||||+.+.|-+... ++|.|-- .+
T Consensus 587 LGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~E 666 (807)
T KOG0066|consen 587 LGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGE 666 (807)
T ss_pred eecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccc
Confidence 5788888888899999999888 4789999999999999999998765211 2222110 00
Q ss_pred ---------CCChhhH--HHHHHhcCCCCCc-cCCccchhHHHHHHHHHHHH-cCCCcEEEEcCCCCCCCHHHHHHHHHH
Q 001570 788 ---------SASIPYF--DAIMLHMKSYDSP-ADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGS 854 (1051)
Q Consensus 788 ---------~~~i~~~--d~i~~~~~~~d~~-~~~~stfs~e~~~~~~il~~-a~~~sLlLLDEp~~GlD~~~~~~l~~~ 854 (1051)
...+|+- ...+-.+|+..-. .-....+|+|++....+... +..|+++||||||++||...-.+++.+
T Consensus 667 etp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEA 746 (807)
T KOG0066|consen 667 ETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEA 746 (807)
T ss_pred cCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHH
Confidence 0111211 1122223322111 11234567777765444433 689999999999999999876666655
Q ss_pred HHHHHHcCCcEEEEeccChhhhh
Q 001570 855 IIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 855 ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
|-+ ..-.||++|||..++.
T Consensus 747 Ine----y~GgVi~VsHDeRLi~ 765 (807)
T KOG0066|consen 747 INE----YNGGVIMVSHDERLIV 765 (807)
T ss_pred HHh----ccCcEEEEecccceee
Confidence 544 4567899999977743
No 406
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.28 E-value=7.6e-12 Score=130.37 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=75.4
Q ss_pred EEEEEcCCCCCcchHHHHHHhhHHhhhcc----e---------eecCCCCChhh-HHHHHHhcCCCCCccCCccchhHHH
Q 001570 753 LFLLTGPNGGGKSSLLRSICAASLLGICG----L---------MVPAESASIPY-FDAIMLHMKSYDSPADGKSSFQVEM 818 (1051)
Q Consensus 753 i~~ItGpNGsGKSTLLk~I~gl~~la~~G----~---------~vpa~~~~i~~-~d~i~~~~~~~d~~~~~~stfs~e~ 818 (1051)
+.+|+||||+|||++|.+|+-........ . -..+..+.+.. ++..+.-+--.+.. .-+|+++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~----~~LS~Ge 99 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVE----QILSGGE 99 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCc----ccCCHHH
Confidence 88999999999999999997654211000 0 00000010000 00000000001111 1177888
Q ss_pred HHHHHHHHH-----cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCccc
Q 001570 819 SEIRSIVTA-----TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 881 (1051)
Q Consensus 819 ~~~~~il~~-----a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~ 881 (1051)
++...+... ..+|+++|+|||++|+|+.....+.. ++..+.+.|.++|++||+++....++.
T Consensus 100 ~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~-~L~~~~~~g~tiIiiSH~~~~~~~adr 166 (178)
T cd03239 100 KSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSD-MIKEMAKHTSQFIVITLKKEMFENADK 166 (178)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEECCHHHHhhCCe
Confidence 775554432 37899999999999999988887755 455555558999999999988765543
No 407
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.26 E-value=1.8e-11 Score=153.79 Aligned_cols=159 Identities=15% Similarity=0.133 Sum_probs=112.5
Q ss_pred CcccccC--CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhH---------------------Hhhhcceeec
Q 001570 733 PYWFDAA--EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS---------------------LLGICGLMVP 785 (1051)
Q Consensus 733 ~~~~~~~--~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~---------------------~la~~G~~vp 785 (1051)
++.+.|+ .+.+|++|+++ |+.++|+||+||||||.+-++-... +..|+| .|.
T Consensus 992 ~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~-lVs 1070 (1228)
T KOG0055|consen 992 NVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG-LVS 1070 (1228)
T ss_pred eeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc-eec
Confidence 4444554 46789999999 8999999999999999999888776 123333 677
Q ss_pred CCCCChh--hHHHHHHh------------------------c--CCCCCccCCccchhHHHHH-HHHHHHHcCCCcEEEE
Q 001570 786 AESASIP--YFDAIMLH------------------------M--KSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLI 836 (1051)
Q Consensus 786 a~~~~i~--~~d~i~~~------------------------~--~~~d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLL 836 (1051)
|++..+. +.++|..- + |.+-..-..-..+|+|++| ++.+.+.+.+|++|||
T Consensus 1071 QEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLL 1150 (1228)
T KOG0055|consen 1071 QEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLL 1150 (1228)
T ss_pred cCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeee
Confidence 7765442 12222211 0 1111222233578888888 5556777999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeEEEE
Q 001570 837 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY 894 (1051)
Q Consensus 837 DEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~~~~ 894 (1051)
||-||+||.+. ..+.+.-++... .|.|+|+++|-+...+.++...-+.++.+.+..
T Consensus 1151 DEATSALDseS-ErvVQeALd~a~-~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1151 DEATSALDSES-ERVVQEALDRAM-EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred eccchhhhhhh-HHHHHHHHHHhh-cCCcEEEEecchhhhhcCCEEEEEECCEEEecc
Confidence 99999999954 555577777665 489999999999888888877777777766554
No 408
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.25 E-value=2.6e-11 Score=130.01 Aligned_cols=126 Identities=18% Similarity=0.219 Sum_probs=78.6
Q ss_pred Eeec-eEEEEEcCCCCCcchHHHHHHhhHHhh--------------hcce-----------------------eecCCC-
Q 001570 748 VDMQ-SLFLLTGPNGGGKSSLLRSICAASLLG--------------ICGL-----------------------MVPAES- 788 (1051)
Q Consensus 748 islg-~i~~ItGpNGsGKSTLLk~I~gl~~la--------------~~G~-----------------------~vpa~~- 788 (1051)
+.++ .+.+|+||||+||||+|.+|+...... +.|. ++++..
T Consensus 19 i~~~~g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~~~q~~~ 98 (213)
T cd03277 19 FRPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQFLPQDRV 98 (213)
T ss_pred EecCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEEEchHHH
Confidence 4453 578999999999999999998765210 1111 000000
Q ss_pred ---CChhhHHHHHHhcCC-CCCccCCccchhHHHHHHHHHHHH-----cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 001570 789 ---ASIPYFDAIMLHMKS-YDSPADGKSSFQVEMSEIRSIVTA-----TTSRSLVLIDEICRGTETAKGTCIAGSIIETL 859 (1051)
Q Consensus 789 ---~~i~~~d~i~~~~~~-~d~~~~~~stfs~e~~~~~~il~~-----a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L 859 (1051)
+.+.. .+++..+.. .+.......++|++++++..+... +.+|+++|+|||++|+|+.....+...+.+ +
T Consensus 99 ~~~~~~~~-~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~-~ 176 (213)
T cd03277 99 GEFAKLSP-IELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVE-T 176 (213)
T ss_pred HHHHhCCh-HhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHH-H
Confidence 00000 122222221 122234556899999986554322 589999999999999999988888544444 4
Q ss_pred HcC-C-cEEEEeccChhh
Q 001570 860 DNI-G-CLGIVSTHLHGI 875 (1051)
Q Consensus 860 ~~~-g-~~vi~~TH~~el 875 (1051)
.+. | .++|++||++..
T Consensus 177 ~~~~g~~~viiith~~~~ 194 (213)
T cd03277 177 ACKEGTSQYFLITPKLLP 194 (213)
T ss_pred hhcCCCceEEEEchhhcc
Confidence 444 5 579999998643
No 409
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.22 E-value=3e-11 Score=139.23 Aligned_cols=134 Identities=17% Similarity=0.237 Sum_probs=86.7
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--hhcceeecCCC--------------------CChhh
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--GICGLMVPAES--------------------ASIPY 793 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--a~~G~~vpa~~--------------------~~i~~ 793 (1051)
.+..++.|.+| |+-++|+|||||||||+|++|++-... .++++|..... ..+..
T Consensus 86 ~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~ 165 (614)
T KOG0927|consen 86 HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEY 165 (614)
T ss_pred CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHH
Confidence 35778888888 899999999999999999999886521 12222111100 00000
Q ss_pred ----------------HH-------------------HHHHhcCCC-CCccCCccchhHHHHHH-HHHHHHcCCCcEEEE
Q 001570 794 ----------------FD-------------------AIMLHMKSY-DSPADGKSSFQVEMSEI-RSIVTATTSRSLVLI 836 (1051)
Q Consensus 794 ----------------~d-------------------~i~~~~~~~-d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLL 836 (1051)
++ +++..+|.. ....+....||+|.+.. +.+.+...+|+|+||
T Consensus 166 ~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLL 245 (614)
T KOG0927|consen 166 LAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLL 245 (614)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEe
Confidence 11 122222221 12234445677776654 444556899999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCc-EEEEeccChhhhh
Q 001570 837 DEICRGTETAKGTCIAGSIIETLDNIGC-LGIVSTHLHGIFS 877 (1051)
Q Consensus 837 DEp~~GlD~~~~~~l~~~ile~L~~~g~-~vi~~TH~~el~~ 877 (1051)
||||+|||+.. ...+-++|.+... ++++++|+.+...
T Consensus 246 DEPtnhLDleA----~~wLee~L~k~d~~~lVi~sh~QDfln 283 (614)
T KOG0927|consen 246 DEPTNHLDLEA----IVWLEEYLAKYDRIILVIVSHSQDFLN 283 (614)
T ss_pred cCCccCCCHHH----HHHHHHHHHhccCceEEEEecchhhhh
Confidence 99999999954 2455667776665 8999999998854
No 410
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.22 E-value=1.7e-10 Score=128.20 Aligned_cols=160 Identities=14% Similarity=0.174 Sum_probs=109.5
Q ss_pred CCcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceee-----cCCCCC--hhhHHHHHHh
Q 001570 732 SPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMV-----PAESAS--IPYFDAIMLH 800 (1051)
Q Consensus 732 ~~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~v-----pa~~~~--i~~~d~i~~~ 800 (1051)
+++.+.+....+-++.|++ |+++.|+|.|||||||+++.+.|+......+.++ .++.-. -..+..||++
T Consensus 326 rnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsD 405 (546)
T COG4615 326 RNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSD 405 (546)
T ss_pred eeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhh
Confidence 4444555555566666666 9999999999999999999999987544333322 222100 0112222222
Q ss_pred -------------------------cCCCCCccCC-----ccchhHHHH-HHHHHHHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 801 -------------------------MKSYDSPADG-----KSSFQVEMS-EIRSIVTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 801 -------------------------~~~~d~~~~~-----~stfs~e~~-~~~~il~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
+.+.....-. .-.+|.|++ +++.+++.+.+++++++||=.+--||.-+.
T Consensus 406 yhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR 485 (546)
T COG4615 406 YHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRR 485 (546)
T ss_pred HhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHH
Confidence 2111111100 113455555 477788889999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeE
Q 001570 850 CIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 891 (1051)
Q Consensus 850 ~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~ 891 (1051)
.+-..++-.+++.|+||+.+|||-.-...+++.-.+.++.+.
T Consensus 486 ~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~ 527 (546)
T COG4615 486 EFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLS 527 (546)
T ss_pred HHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCcee
Confidence 999999999999999999999987666666666666666654
No 411
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.19 E-value=2.8e-10 Score=135.68 Aligned_cols=152 Identities=16% Similarity=0.209 Sum_probs=102.1
Q ss_pred ccceeecccCCcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhh--------c-ceeecCCCC
Q 001570 723 ANCLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI--------C-GLMVPAESA 789 (1051)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~--------~-G~~vpa~~~ 789 (1051)
++.+.++++ ....+.+...+++.++ |+-+.|+||||||||||+|+|+|+-.-+. . -.|+||.+-
T Consensus 390 ~~~i~~~nl---~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY 466 (604)
T COG4178 390 DHGITLENL---SLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPY 466 (604)
T ss_pred cceeEEeee---eEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCC
Confidence 355555543 2233456688888888 89999999999999999999999863221 1 245666531
Q ss_pred C-----------------hh--hHHHHHHhcCCCC------CccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCC
Q 001570 790 S-----------------IP--YFDAIMLHMKSYD------SPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGT 843 (1051)
Q Consensus 790 ~-----------------i~--~~d~i~~~~~~~d------~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~Gl 843 (1051)
. ++ .+-+++..+|+.+ ........+|.|.+| ++.+.-..++|++++|||-|+++
T Consensus 467 ~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsAL 546 (604)
T COG4178 467 LPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSAL 546 (604)
T ss_pred CCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhcc
Confidence 1 00 0123444444332 223344566665555 66666679999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCc
Q 001570 844 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 879 (1051)
Q Consensus 844 D~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~ 879 (1051)
|+.....+...+.+.| .++|+|-+.|-..+-.+.
T Consensus 547 De~~e~~l~q~l~~~l--p~~tvISV~Hr~tl~~~h 580 (604)
T COG4178 547 DEETEDRLYQLLKEEL--PDATVISVGHRPTLWNFH 580 (604)
T ss_pred ChHHHHHHHHHHHhhC--CCCEEEEeccchhhHHHH
Confidence 9988777755555544 479999999987775543
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.18 E-value=5.4e-11 Score=150.27 Aligned_cols=84 Identities=12% Similarity=0.095 Sum_probs=64.2
Q ss_pred HHhcCCCC-CccCCccchhHHHHHHHHHHHH-cC---CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccC
Q 001570 798 MLHMKSYD-SPADGKSSFQVEMSEIRSIVTA-TT---SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 872 (1051)
Q Consensus 798 ~~~~~~~d-~~~~~~stfs~e~~~~~~il~~-a~---~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~ 872 (1051)
+..+|+.. .+.+...++|+|++|...+... +. +|+++||||||+|||+.+...+ ..+++.+.+.|.|+|++||+
T Consensus 812 L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L-~~~L~~l~~~G~TVIvi~H~ 890 (924)
T TIGR00630 812 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKL-LEVLQRLVDQGNTVVVIEHN 890 (924)
T ss_pred HHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEeCC
Confidence 34456654 3567788999999886655443 43 5899999999999999998888 55556677779999999999
Q ss_pred hhhhhCcccc
Q 001570 873 HGIFSLPLKI 882 (1051)
Q Consensus 873 ~el~~l~~~~ 882 (1051)
+++...+++.
T Consensus 891 ~~~i~~aD~i 900 (924)
T TIGR00630 891 LDVIKTADYI 900 (924)
T ss_pred HHHHHhCCEE
Confidence 9987765543
No 413
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.16 E-value=7.2e-11 Score=133.41 Aligned_cols=129 Identities=14% Similarity=0.128 Sum_probs=97.8
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhhh------cceeecCCC-----CCh---------------hhHHHHHHhcCCC
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLGI------CGLMVPAES-----ASI---------------PYFDAIMLHMKSY 804 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la~------~G~~vpa~~-----~~i---------------~~~d~i~~~~~~~ 804 (1051)
|++++++||||-||||+.|+++|.+-... .-+|-||-- ..+ .+...++..+++.
T Consensus 367 gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~ 446 (591)
T COG1245 367 GEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLE 446 (591)
T ss_pred ceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchH
Confidence 79999999999999999999999874331 123444421 111 1123355556666
Q ss_pred CCccCCccchhHH-HHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCc
Q 001570 805 DSPADGKSSFQVE-MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLP 879 (1051)
Q Consensus 805 d~~~~~~stfs~e-~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~ 879 (1051)
+.+++....+|+| +|+++.+++.+.+.+|.|||||.+.||...+...+..|.+.+.+.+++.+++-||.-+.++.
T Consensus 447 ~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyv 522 (591)
T COG1245 447 DLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYV 522 (591)
T ss_pred HHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhh
Confidence 6677777888865 55677778889999999999999999999988887777777777899999999998876653
No 414
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.15 E-value=1.4e-10 Score=146.96 Aligned_cols=84 Identities=11% Similarity=0.064 Sum_probs=65.0
Q ss_pred HHhcCCCC-CccCCccchhHHHHHHHHH-HHHcCCC---cEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccC
Q 001570 798 MLHMKSYD-SPADGKSSFQVEMSEIRSI-VTATTSR---SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 872 (1051)
Q Consensus 798 ~~~~~~~d-~~~~~~stfs~e~~~~~~i-l~~a~~~---sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~ 872 (1051)
+..+|+.. .+.+...++|+|++|...+ ...+.+| +++|||||++|||+.+...+ ..+++.+.+.|.|+|++||+
T Consensus 814 L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L-~~~L~~l~~~G~TVIiitH~ 892 (943)
T PRK00349 814 LVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKL-LEVLHRLVDKGNTVVVIEHN 892 (943)
T ss_pred HHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEecC
Confidence 34456654 4567788999999885555 4456777 89999999999999998888 55566677779999999999
Q ss_pred hhhhhCcccc
Q 001570 873 HGIFSLPLKI 882 (1051)
Q Consensus 873 ~el~~l~~~~ 882 (1051)
++++..+++.
T Consensus 893 ~~~i~~aD~i 902 (943)
T PRK00349 893 LDVIKTADWI 902 (943)
T ss_pred HHHHHhCCEE
Confidence 9987765543
No 415
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.15 E-value=8.6e-11 Score=132.79 Aligned_cols=147 Identities=16% Similarity=0.157 Sum_probs=107.4
Q ss_pred ceeeeeEee---ceEEEEEcCCCCCcchHHHHHHhhHHhh----------------hcce--------------------
Q 001570 742 SAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLG----------------ICGL-------------------- 782 (1051)
Q Consensus 742 ~~vl~~isl---g~i~~ItGpNGsGKSTLLk~I~gl~~la----------------~~G~-------------------- 782 (1051)
.|.+-.+-. |++++|+||||-||||.+|+++|-+..- .-|.
T Consensus 88 gFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~ 167 (591)
T COG1245 88 GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKP 167 (591)
T ss_pred ceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecch
Confidence 344444443 8999999999999999999999976210 0000
Q ss_pred ----eecCC-C----------CChhhHHHHHHhcCCCCCccCCccchhHH-HHHHHHHHHHcCCCcEEEEcCCCCCCCHH
Q 001570 783 ----MVPAE-S----------ASIPYFDAIMLHMKSYDSPADGKSSFQVE-MSEIRSIVTATTSRSLVLIDEICRGTETA 846 (1051)
Q Consensus 783 ----~vpa~-~----------~~i~~~d~i~~~~~~~d~~~~~~stfs~e-~~~~~~il~~a~~~sLlLLDEp~~GlD~~ 846 (1051)
++|.. . ..-+.+|.+.+++++...+.+..+.+|+| +|+++.+++.+.+.++.++|||++-||..
T Consensus 168 QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~ 247 (591)
T COG1245 168 QYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIR 247 (591)
T ss_pred HHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHH
Confidence 11110 0 00134677888889988889999999875 55567777778999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccce
Q 001570 847 KGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKA 889 (1051)
Q Consensus 847 ~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~ 889 (1051)
.+...+..|.+ |.+.+.+||++.||+...++..+..++.++.
T Consensus 248 qRl~~ar~Ire-l~~~~k~ViVVEHDLavLD~lsD~vhI~YG~ 289 (591)
T COG1245 248 QRLNAARVIRE-LAEDGKYVIVVEHDLAVLDYLSDFVHILYGE 289 (591)
T ss_pred HHHHHHHHHHH-HhccCCeEEEEechHHHHHHhhheeEEEecC
Confidence 99998665555 5555899999999998887665555555543
No 416
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.15 E-value=1.3e-10 Score=152.92 Aligned_cols=88 Identities=11% Similarity=0.053 Sum_probs=68.5
Q ss_pred HHHhcCCCCC-ccCCccchhHHHHHHHHHHHHc----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEecc
Q 001570 797 IMLHMKSYDS-PADGKSSFQVEMSEIRSIVTAT----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTH 871 (1051)
Q Consensus 797 i~~~~~~~d~-~~~~~stfs~e~~~~~~il~~a----~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH 871 (1051)
.+..+++.+. +.+...++|+|++|...+...+ .+|+++||||||+|||+.+...+ ..++..+.+.|.|+|++||
T Consensus 792 ~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~L-l~lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 792 ALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKAL-IYVLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCEEEEEeC
Confidence 3445677654 6778889999999866665443 69999999999999999988888 5556667777999999999
Q ss_pred ChhhhhCccccccc
Q 001570 872 LHGIFSLPLKIKNA 885 (1051)
Q Consensus 872 ~~el~~l~~~~~~i 885 (1051)
++++...+++...+
T Consensus 871 dl~~i~~aDrVi~L 884 (1809)
T PRK00635 871 NMHVVKVADYVLEL 884 (1809)
T ss_pred CHHHHHhCCEEEEE
Confidence 99988666554333
No 417
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.14 E-value=2.8e-11 Score=151.87 Aligned_cols=134 Identities=17% Similarity=0.239 Sum_probs=97.3
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH-------------------hhhcceeecCCCCCh-----
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-------------------LGICGLMVPAESASI----- 791 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~-------------------la~~G~~vpa~~~~i----- 791 (1051)
+.+.+++|++= |.+.+|+|+|||||||||++++|=.. .++.-+||-|....+
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 34678999985 88999999999999999999998531 122223444332211
Q ss_pred ----------------------hhHHHHHHhcCCCCCccCCc----cchhHHHHHHHHH-HHHcCCC-cEEEEcCCCCCC
Q 001570 792 ----------------------PYFDAIMLHMKSYDSPADGK----SSFQVEMSEIRSI-VTATTSR-SLVLIDEICRGT 843 (1051)
Q Consensus 792 ----------------------~~~d~i~~~~~~~d~~~~~~----stfs~e~~~~~~i-l~~a~~~-sLlLLDEp~~Gl 843 (1051)
.+++++++-+++.+..+.-. +-++.|+++...| ...+.+| +||+|||||+||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL 961 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL 961 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence 23566777776654332211 4577888875555 6668889 999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEeccChh
Q 001570 844 ETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 874 (1051)
Q Consensus 844 D~~~~~~l~~~ile~L~~~g~~vi~~TH~~e 874 (1051)
|...+..+ ..+++.+.+.|.+|+.+-|.+.
T Consensus 962 DsqaA~~i-~~~lrkla~tGqtIlCTIHQPS 991 (1391)
T KOG0065|consen 962 DSQAAAIV-MRFLRKLADTGQTILCTIHQPS 991 (1391)
T ss_pred cHHHHHHH-HHHHHHHHhcCCeEEEEecCCc
Confidence 99776666 7778888889999999999864
No 418
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.09 E-value=4.4e-10 Score=125.66 Aligned_cols=138 Identities=21% Similarity=0.244 Sum_probs=102.7
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhc-------c----------eeecCCC-CCh---hhHH
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGIC-------G----------LMVPAES-ASI---PYFD 795 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~-------G----------~~vpa~~-~~i---~~~d 795 (1051)
..+++.|++| |++++|+|++|+||||++++|+|...---. | .++|.+. ..+ .+++
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHH
Confidence 4578999999 899999999999999999999998731111 1 1233221 011 1122
Q ss_pred -------------HHHHhcCCCCCc--cCCccchhHHHHHHHHHHHH-cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 001570 796 -------------AIMLHMKSYDSP--ADGKSSFQVEMSEIRSIVTA-TTSRSLVLIDEICRGTETAKGTCIAGSIIETL 859 (1051)
Q Consensus 796 -------------~i~~~~~~~d~~--~~~~stfs~e~~~~~~il~~-a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L 859 (1051)
.|+.+.|+.|.. -...+.+|.|+++.+.+.+. +..|.+++.||..+.||+.....++..+-+.-
T Consensus 475 hl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisela 554 (593)
T COG2401 475 HLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA 554 (593)
T ss_pred HHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 344555555543 24556778888887766554 77889999999999999999999999999888
Q ss_pred HcCCcEEEEeccChhhhhC
Q 001570 860 DNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 860 ~~~g~~vi~~TH~~el~~l 878 (1051)
.+.|.|.+++||..|+.+.
T Consensus 555 Re~giTlivvThrpEv~~A 573 (593)
T COG2401 555 REAGITLIVVTHRPEVGNA 573 (593)
T ss_pred HHhCCeEEEEecCHHHHhc
Confidence 8889999999999998763
No 419
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.05 E-value=1.2e-09 Score=110.44 Aligned_cols=135 Identities=14% Similarity=0.136 Sum_probs=96.0
Q ss_pred eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhcceeecCCCCC--hhh---
Q 001570 743 AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAESAS--IPY--- 793 (1051)
Q Consensus 743 ~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G~~vpa~~~~--i~~--- 793 (1051)
.+.+.+|| |+.++|+|.||||||||.|+++|++. .++..-++++++.. -|.
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 35566777 78999999999999999999999972 12223345554321 011
Q ss_pred -------------------HHHHHH---hcCCC-CCccCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCHHHHH
Q 001570 794 -------------------FDAIML---HMKSY-DSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGT 849 (1051)
Q Consensus 794 -------------------~d~i~~---~~~~~-d~~~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~~~~~ 849 (1051)
..+||. .+|.. |........++.+++| ++.+.+..-+|+++|.||..++||...+.
T Consensus 107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrs 186 (267)
T COG4167 107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRS 186 (267)
T ss_pred hhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHH
Confidence 122332 33432 3333445566677776 45556678999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEeccChhhhh
Q 001570 850 CIAGSIIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 850 ~l~~~ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
.+...+++.-.+.|..-|.+|.+.....
T Consensus 187 Ql~NL~LeLQek~GiSyiYV~QhlG~iK 214 (267)
T COG4167 187 QLINLMLELQEKQGISYIYVTQHIGMIK 214 (267)
T ss_pred HHHHHHHHHHHHhCceEEEEechhhHhh
Confidence 9988888766678999999999888754
No 420
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.03 E-value=1.6e-09 Score=111.43 Aligned_cols=161 Identities=17% Similarity=0.265 Sum_probs=100.2
Q ss_pred ceeecccCCcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhh------------------cc-
Q 001570 725 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGI------------------CG- 781 (1051)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~------------------~G- 781 (1051)
.+.+.|+. +.+....+++-|+++ |....++|.||+|||||||+++|-.+..- .|
T Consensus 13 aievsgl~---f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 13 AIEVSGLQ---FKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred eEEEeccE---EecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 34555543 344555678888887 78999999999999999999999542110 00
Q ss_pred -eeecCC-------CCChhh-----HHHHHHhcCCCCC-------------ccCCccchhHHHHHHHHH-HHHcCCCcEE
Q 001570 782 -LMVPAE-------SASIPY-----FDAIMLHMKSYDS-------------PADGKSSFQVEMSEIRSI-VTATTSRSLV 834 (1051)
Q Consensus 782 -~~vpa~-------~~~i~~-----~d~i~~~~~~~d~-------------~~~~~stfs~e~~~~~~i-l~~a~~~sLl 834 (1051)
+|.-.+ ...+|. ...++..++..+. +.-.....|.|+++...| +....+=.++
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVL 169 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVL 169 (291)
T ss_pred eeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEE
Confidence 011000 001111 1122222222111 111224566777776665 4445666999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChh-hhhCcccccccccc
Q 001570 835 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG-IFSLPLKIKNAAYK 888 (1051)
Q Consensus 835 LLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~e-l~~l~~~~~~i~~~ 888 (1051)
||||.|--||...++.+..-+.+....+|+||+.+||..+ ++.-+.+...+..+
T Consensus 170 LLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~G 224 (291)
T KOG2355|consen 170 LLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSG 224 (291)
T ss_pred EeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCC
Confidence 9999999999999999877777777778999999999765 44444444443333
No 421
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=99.01 E-value=2.3e-09 Score=113.44 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=81.2
Q ss_pred HHHHHHhhhcCCc------ccHHHHHHHHHhHhhhhhcCCCcHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhhcChHHH
Q 001570 404 ILYVRDLLLNPPA------YEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELN 477 (1051)
Q Consensus 404 ~r~LR~llL~P~~------~sl~~~I~~r~t~mg~~l~~i~dlerL~~~L~~p~a~~~dl~~I~~rL~aV~~l~~~~~l~ 477 (1051)
+.|+++|+++.+. ++|++.|++|+|.+|. ++|+.|+.+| +.|...|+.|+++|++|.+|+.++
T Consensus 1 ~~Tl~~L~i~~~~~~~~~~~sL~~~ln~t~T~~Gk--------r~L~~~l~~P---~~d~~~I~~R~~~v~~~~~n~~~~ 69 (204)
T PF05192_consen 1 ANTLKSLEIFENSRSGKKKGSLFSLLNRTSTPMGK--------RLLRSWLLQP---LTDIEEIEKRQDAVEEFLQNEELR 69 (204)
T ss_dssp HHHHHHTTSSSBTTTSSSSTSHHHHH---SSHHHH--------HHHHHHHHS----BS-HHHHHHHHHHHHHHHHTHHHH
T ss_pred ChhHHhccCCCCCCCCCCCCcHHHHHhcCCChHHH--------HHHHHHHhCc---cchHHHHHHHHHHHHHHHHhhhHh
Confidence 4789999999854 5999999999999999 9999999999 999999999999999999999999
Q ss_pred HHHHhccCchhhcccchhhHHHhhhHhHHHHHHHHHhhhc
Q 001570 478 EILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISL 517 (1051)
Q Consensus 478 ~~L~~~l~~~~~~~g~~~dlerl~~~~~~~~~~i~~~i~l 517 (1051)
..++..+..++ |+++++.++..+...+.++..+
T Consensus 70 ~~~~~~l~~~~-------di~~~l~~l~~~~~~~~~~~~l 102 (204)
T PF05192_consen 70 EELRSILKKIP-------DIERILKRLRSGRASPQDLLKL 102 (204)
T ss_dssp HHHHHHHTTC--------SHHHHHHHHHTTHHHHHHHHHH
T ss_pred hhhhhhhhccc-------hHHHHHHHHHHhhcChHHHHHH
Confidence 99998888876 9999999998877777777664
No 422
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.99 E-value=5.9e-09 Score=134.41 Aligned_cols=165 Identities=17% Similarity=0.170 Sum_probs=114.0
Q ss_pred ceeecccCCcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh-----hc--ceeecCCC----C
Q 001570 725 CLKMNGLSPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG-----IC--GLMVPAES----A 789 (1051)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la-----~~--G~~vpa~~----~ 789 (1051)
.+.+++..--|-. .+..+.++||+| |+.++|+||-|||||+||.+|.|-+..- -. -.||||++ +
T Consensus 518 ~i~i~~~sfsW~~-~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ng 596 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDS-ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNG 596 (1381)
T ss_pred eEEEeeeeEecCC-CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCC
Confidence 3555544444543 334559999998 8999999999999999999999976321 12 24788764 1
Q ss_pred Ch------------hhHHHHHHhcC---------CCC--CccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCCH
Q 001570 790 SI------------PYFDAIMLHMK---------SYD--SPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTET 845 (1051)
Q Consensus 790 ~i------------~~~d~i~~~~~---------~~d--~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD~ 845 (1051)
.+ ..++++...-. ..| .+-++=-++|+|+++. +.+.+.-++.+++|||.|++++|.
T Consensus 597 TvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDa 676 (1381)
T KOG0054|consen 597 TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDA 676 (1381)
T ss_pred cHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhH
Confidence 11 11233332222 222 2223335789999884 445666799999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeE
Q 001570 846 AKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 891 (1051)
Q Consensus 846 ~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~ 891 (1051)
+.+..|....+..+. +++|+|++||..++...++...-+.++.+.
T Consensus 677 hvg~~if~~ci~~~L-~~KT~ILVTHql~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 677 HVGKHIFEECIRGLL-RGKTVILVTHQLQFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred hhhHHHHHHHHHhhh-cCCEEEEEeCchhhhhhCCEEEEecCCeEe
Confidence 999999988885554 478999999988887776655555554443
No 423
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=98.98 E-value=5e-10 Score=133.31 Aligned_cols=361 Identities=14% Similarity=0.092 Sum_probs=217.3
Q ss_pred eeecHHhhh--ccCCCC-CC---C-ccceEecCCCccCCCHHHHHHhhhcCCcccHHHHHHHHHhHhhhh----------
Q 001570 371 LHLGTATQI--GAIPTE-GI---P-CLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV---------- 433 (1051)
Q Consensus 371 LyLd~~Tq~--ell~~~-~~---~-sLl~v~l~~t~t~mg~r~LR~llL~P~~~sl~~~I~~r~t~mg~~---------- 433 (1051)
|-+|-++-+ .+++.+ +. + +|-..++++|.|.+|.|.|+.|+-.|+. +.. .|++|++.+..+
T Consensus 288 m~ld~~av~alnlf~~~~~~~~~s~~L~~~~LN~c~t~~G~rll~~w~~qpL~-~~~-ri~~r~d~v~~l~~~~~~rq~L 365 (902)
T KOG0219|consen 288 MRLDSAAVRALNLFPLPYNNPEKSNNLALSLLNHCKTLQGERLLRQWLKQPLR-DID-RINERHDLVEALVEDAEIRQKL 365 (902)
T ss_pred hhHHHHHHHHHhhcCCCCCCccccchhhHHHHhhcccccchhhhhhhhhcchH-HHH-HHHHHhhhHHHHHhhhHHHHHH
Confidence 455555555 555542 11 1 4444269999999999999999999999 887 999999998875
Q ss_pred ----hcCCCcHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhhcChHHHHHHHhccCchhhcccchhhHHHhhhHhHHHHH
Q 001570 434 ----TCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASV 509 (1051)
Q Consensus 434 ----l~~i~dlerL~~~L~~p~a~~~dl~~I~~rL~aV~~l~~~~~l~~~L~~~l~~~~~~~g~~~dlerl~~~~~~~~~ 509 (1051)
|..+||+.|+..+|- .+|+.|..+|-.....+ |.+-..|..+..+.. -.+...+-....++.....
T Consensus 366 ~~~lL~~~pdi~rl~~~l~--~~~L~d~~r~yq~~~~l------~~~~~~l~~~~~~~~--~ll~~~l~~~~~~~~kf~~ 435 (902)
T KOG0219|consen 366 RDDLLRRIPDISRLARRLM--KANLQDVNRIYQAAKLL------PTVVQVLISLSESHN--RLLKSPLTEHLKKLEKFQE 435 (902)
T ss_pred HHHHhhcChhHHHhhhhhh--hcchHHHHHHHHHHHHh------HHHHHHHHhhhhhhh--hhhhhhhhhhhhhHHHHHH
Confidence 899999999999998 89999999988888877 666666654433210 0011123333444444555
Q ss_pred HHHHhhhccCCchhhhccCCCCChhHHhhcchhhhhhhhhcccchhHHHHHHHHHHHHHhhccCchhHHhhhhc------
Q 001570 510 RIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKA------ 583 (1051)
Q Consensus 510 ~i~~~i~l~~e~p~~~~~~~~I~~~f~~~lds~~~g~V~~~~~~e~l~elr~l~~~L~~aI~ed~lpi~~re~~------ 583 (1051)
.+..++.+ +.....--.|+.+|++++- + +.+.+++++.-..++....+.|+ +.-.+.+-
T Consensus 436 ~ve~t~D~----da~ee~ey~VR~eFdeeL~-e---------Lrq~LdeL~~~m~~~hkrv~~dl-~~D~~kklkLe~~~ 500 (902)
T KOG0219|consen 436 MVETTVDL----DAEEENEYRVRVDFDEELQ-E---------LREKLDELERKMEKLHKKVSADL-GLDPKKQLKLENSA 500 (902)
T ss_pred HHHHHhhH----hHHhcCcEEEecccCHHHH-H---------HHHHHHHHHHHHHHHHHHHHhhc-CCCcccceeeeccc
Confidence 55555553 1112233567779998874 2 34456677777777666667666 33221111
Q ss_pred ----cccCCCCCchhhhhhhcccceeecccccccccccCCCCccccccccccccc-cCccccceeeehHHHHHHHHHHHH
Q 001570 584 ----TTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDS-KGRKVGEEWFSTLKVEEALERYHE 658 (1051)
Q Consensus 584 ----~ir~tgg~~~eI~y~~~~~~~~l~Gy~ieV~v~~~~~~~~~I~~l~~~~~~-~g~~v~~e~f~t~eL~ea~er~~~ 658 (1051)
..|-| .-+-+..+.. -.|.++.. ++.++. ++. +-. -...+-.....+|+.
T Consensus 501 ~~G~~~RlT---r~e~~~LR~~------k~y~eLst-----qK~GV~-----FTtk~L~------slN~e~~~~qk~Y~~ 555 (902)
T KOG0219|consen 501 QFGWYFRVT---RKEEKVLRKK------KNYTELST-----QKGGVK-----FTTKKLS------SLNDEFMSLQKEYDE 555 (902)
T ss_pred hhheeeeee---ehhhhHhhcc------CCceEEEE-----eeCcEE-----EEhhhHh------hhHHHHHHHHHHHHH
Confidence 01111 0010111111 11222211 111221 111 001 112233445667889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCccccc--ccccccceeec-ccCCcc
Q 001570 659 AGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDI--ELDGANCLKMN-GLSPYW 735 (1051)
Q Consensus 659 ae~~a~e~i~eiL~eL~~~L~~~~~~L~~l~~lla~Adal~~~a~~a~~~~~~~P~~~~~--~~~~~~~~~~~-~~~~~~ 735 (1051)
.+..+-.++..+......-+......++.+|++++||.+.-....-- -++-..|.=+.. .++.+||+... .-+|+.
T Consensus 556 ~Q~~ivrevikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pY-vRP~~l~~gs~rl~l~~~rHp~lE~Qd~~~fI 634 (902)
T KOG0219|consen 556 AQNEIVREIIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPY-VRPKLLPLGSKRLELKQSRHPVLEGQDEIPFI 634 (902)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCc-cCccccccchhHHHHHhcccchhhccccCCCC
Confidence 99999999999999999999999999999999999997654221111 122222222211 34577876543 323332
Q ss_pred cccCCC---ceeeeeEee--c--eEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCC
Q 001570 736 FDAAEG---SAVHNTVDM--Q--SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE 787 (1051)
Q Consensus 736 ~~~~~~---~~vl~~isl--g--~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~ 787 (1051)
+++ +...+++.+ | .---.|+++++|++|||.+|+-++.+.+.+..++..
T Consensus 635 ---pNdv~le~~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~ 690 (902)
T KOG0219|consen 635 ---PNDVVLEKGKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDG 690 (902)
T ss_pred ---CCccccccCCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhH
Confidence 111 122344444 2 234579999999999999999999888888877653
No 424
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.96 E-value=3.2e-09 Score=108.01 Aligned_cols=123 Identities=21% Similarity=0.275 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCCcchHHHHHHhhHHhhhcc-------------------------------eeecCCCC--ChhhHHHHH
Q 001570 752 SLFLLTGPNGGGKSSLLRSICAASLLGICG-------------------------------LMVPAESA--SIPYFDAIM 798 (1051)
Q Consensus 752 ~i~~ItGpNGsGKSTLLk~I~gl~~la~~G-------------------------------~~vpa~~~--~i~~~d~i~ 798 (1051)
.|+.|+|.||+||||||-.|+-..-..-.| .|.-++.. ...++|..-
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De~~ 117 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDEAD 117 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHhhh
Confidence 579999999999999999998765211111 11111110 001112111
Q ss_pred HhcCCCCCccCCccchhHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 799 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 799 ~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
-.-+ .-...+...|.|..-++.+.+..++.-+.|||||-++|+|.-+.++ .+++..+.+.|.-+||+||-+-+...
T Consensus 118 ~e~~---~~~~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlel-la~l~~la~sGaQ~IiATHSPiLlAi 193 (233)
T COG3910 118 GEAN---YGGRSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLEL-LAILRDLADSGAQIIIATHSPILLAI 193 (233)
T ss_pred hhcc---cCCcchhhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHH-HHHHHHHHhcCCeEEEEecChhheeC
Confidence 0000 0011122334455556666777889999999999999999998888 78888899999999999998776544
No 425
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=1.5e-09 Score=121.20 Aligned_cols=67 Identities=13% Similarity=0.104 Sum_probs=50.1
Q ss_pred chhHHHHHHHHHH-HH--cC--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCccc
Q 001570 813 SFQVEMSEIRSIV-TA--TT--SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 881 (1051)
Q Consensus 813 tfs~e~~~~~~il-~~--a~--~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~ 881 (1051)
.+|+++++...+. .. +. +|+++|+|||++|+|+.....+...+. .+.+ +.++|++||++++...++.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~-~~~~-~~tii~isH~~~~~~~~d~ 241 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLK-ELSR-SHQVLCITHLPQVAAMADN 241 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHH-HHhC-CCEEEEEechHHHHHhcCc
Confidence 4678888755443 22 22 999999999999999988888855544 4443 7899999999987766554
No 426
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.92 E-value=5.7e-08 Score=113.42 Aligned_cols=134 Identities=16% Similarity=0.212 Sum_probs=95.2
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh--------h----hcceeecCCCC-C---------hh--
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL--------G----ICGLMVPAESA-S---------IP-- 792 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l--------a----~~G~~vpa~~~-~---------i~-- 792 (1051)
+..+..+++| |+-+.||||||||||+|+|.++|+-.. . +.-.|+||.+- . .|
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~ 526 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLK 526 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCc
Confidence 6778888999 899999999999999999999998631 1 12357787642 1 12
Q ss_pred ------------hH---------HHHHHhcCCCC--CccCCccchhH-HHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHH
Q 001570 793 ------------YF---------DAIMLHMKSYD--SPADGKSSFQV-EMSEIRSIVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 793 ------------~~---------d~i~~~~~~~d--~~~~~~stfs~-e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~ 848 (1051)
.+ -++.++.|--| ..-.+...+|. |+++++.+.-.-++|++-||||-|+++|...-
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE 606 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVE 606 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHH
Confidence 01 12344444434 33345566775 55567777777899999999999999998554
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 849 ~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
.+ +-+.+++.|+|.|-+.|-..+.+.
T Consensus 607 ~~----~Yr~~r~~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 607 GA----LYRKCREMGITFISVGHRKSLWKF 632 (659)
T ss_pred HH----HHHHHHHcCCeEEEeccHHHHHhh
Confidence 43 344556779999999998777654
No 427
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.92 E-value=2.1e-08 Score=115.21 Aligned_cols=136 Identities=21% Similarity=0.249 Sum_probs=94.1
Q ss_pred CCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHh---------hhcceeecCCCC-Ch---------hh--
Q 001570 739 AEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL---------GICGLMVPAESA-SI---------PY-- 793 (1051)
Q Consensus 739 ~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~l---------a~~G~~vpa~~~-~i---------~~-- 793 (1051)
+.+..+.+.++| |.-+.||||||||||+|+|+++|+-.. .+..+|+||.+- .. |.
T Consensus 492 P~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~ 571 (728)
T KOG0064|consen 492 PAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSS 571 (728)
T ss_pred cCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcH
Confidence 456677788888 789999999999999999999998522 233457777641 11 10
Q ss_pred ---------------------HHHHHHhcCCCCCccCCccchhHHHHHH-HHHHHHcCCCcEEEEcCCCCCCCHHHHHHH
Q 001570 794 ---------------------FDAIMLHMKSYDSPADGKSSFQVEMSEI-RSIVTATTSRSLVLIDEICRGTETAKGTCI 851 (1051)
Q Consensus 794 ---------------------~d~i~~~~~~~d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLDEp~~GlD~~~~~~l 851 (1051)
++.|..+-+-.|-...+..-+++|.+|. ..+.-.-+.|...+|||-|++..+..
T Consensus 572 e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidv---- 647 (728)
T KOG0064|consen 572 EQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDV---- 647 (728)
T ss_pred HHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccch----
Confidence 1122233233344445555667777664 44455589999999999999998843
Q ss_pred HHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 852 AGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 852 ~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
-..+.+..++.|.+.|-+||.+.+-..
T Consensus 648 E~~i~~~ak~~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 648 EGKIFQAAKDAGISLLSITHRPSLWKY 674 (728)
T ss_pred HHHHHHHHHhcCceEEEeecCccHHHH
Confidence 345566677889999999998777553
No 428
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.8e-09 Score=120.07 Aligned_cols=154 Identities=17% Similarity=0.183 Sum_probs=102.6
Q ss_pred CcccccCCCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------------------hhhcceeecCCC
Q 001570 733 PYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------------------LGICGLMVPAES 788 (1051)
Q Consensus 733 ~~~~~~~~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------------------la~~G~~vpa~~ 788 (1051)
+..+.+.+.++++++++| |+.++|+||+|+||||++|.+-.... +....+.|||+.
T Consensus 267 ~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDt 346 (497)
T COG5265 267 NVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDT 346 (497)
T ss_pred EEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccc
Confidence 344556778899999999 89999999999999999999988761 223344788876
Q ss_pred CChhhHHHHHHhcCC-------------------CC-----------Cc-cCCccchhHHHHH-HHHHHHHcCCCcEEEE
Q 001570 789 ASIPYFDAIMLHMKS-------------------YD-----------SP-ADGKSSFQVEMSE-IRSIVTATTSRSLVLI 836 (1051)
Q Consensus 789 ~~i~~~d~i~~~~~~-------------------~d-----------~~-~~~~stfs~e~~~-~~~il~~a~~~sLlLL 836 (1051)
..+. |.++..++- .+ -. ++++ .+|+|.+| ++.+.....+|+++++
T Consensus 347 vLFN--Dti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl-klSggekqrvaiar~ilk~p~il~~ 423 (497)
T COG5265 347 VLFN--DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL-KLSGGEKQRVAIARTILKNPPILIL 423 (497)
T ss_pred eehh--hhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee-eccCchHHHHHHHHHHhcCCCEEEE
Confidence 5442 112211100 00 00 1111 33455555 5555667899999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccccceeE
Q 001570 837 DEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAYKAMG 891 (1051)
Q Consensus 837 DEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~~~~~ 891 (1051)
||.||.||+..-.+| .+-++.+. .|.|.+++-|-+.-.--++....+.++.+.
T Consensus 424 deatsaldt~te~~i-q~~l~~~~-~~rttlviahrlsti~~adeiivl~~g~i~ 476 (497)
T COG5265 424 DEATSALDTHTEQAI-QAALREVS-AGRTTLVIAHRLSTIIDADEIIVLDNGRIV 476 (497)
T ss_pred ehhhhHhhhhHHHHH-HHHHHHHh-CCCeEEEEeehhhhccCCceEEEeeCCEEE
Confidence 999999999888887 44455454 578999999976655555554444454443
No 429
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.83 E-value=1.3e-08 Score=131.39 Aligned_cols=137 Identities=17% Similarity=0.263 Sum_probs=98.5
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH------------hhhcc--------eeecCCCCChh---
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL------------LGICG--------LMVPAESASIP--- 792 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~------------la~~G--------~~vpa~~~~i~--- 792 (1051)
+...|++++++ |+-+||+|..|||||||+.++-.+.. .+++| +.+||++..+.
T Consensus 1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTv 1230 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTV 1230 (1381)
T ss_pred CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcc
Confidence 34689999999 79999999999999999999988862 12222 37899875431
Q ss_pred -----hH----H-HH---HHhc-----------CCCCCccCCccchhHHHHHHHHH-HHHcCCCcEEEEcCCCCCCCHHH
Q 001570 793 -----YF----D-AI---MLHM-----------KSYDSPADGKSSFQVEMSEIRSI-VTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 793 -----~~----d-~i---~~~~-----------~~~d~~~~~~stfs~e~~~~~~i-l~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
.+ | +| ++.. +++..+..+=+.||.|++|+..+ .+...+.++++|||.|++.|+..
T Consensus 1231 R~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~T 1310 (1381)
T KOG0054|consen 1231 RFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPET 1310 (1381)
T ss_pred ccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHH
Confidence 11 1 11 1111 33444556668999999996654 56689999999999999999966
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 848 GTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 848 ~~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
-.-|-..|.+.++ +||||.+-|..+-.--
T Consensus 1311 D~lIQ~tIR~~F~--dcTVltIAHRl~TVmd 1339 (1381)
T KOG0054|consen 1311 DALIQKTIREEFK--DCTVLTIAHRLNTVMD 1339 (1381)
T ss_pred HHHHHHHHHHHhc--CCeEEEEeeccchhhh
Confidence 5555445555554 7999999997665443
No 430
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=6e-09 Score=116.69 Aligned_cols=135 Identities=16% Similarity=0.175 Sum_probs=86.9
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhH--HhhhcceeecCCC-------CC----------------
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS--LLGICGLMVPAES-------AS---------------- 790 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~--~la~~G~~vpa~~-------~~---------------- 790 (1051)
.++..+.+.++ |+.++++||||-|||||||.|+.-. +...+........ +.
T Consensus 275 ~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLee 354 (807)
T KOG0066|consen 275 QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEE 354 (807)
T ss_pred ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHH
Confidence 34555555555 9999999999999999999998643 2222222111100 00
Q ss_pred ----------------------------------hhhHHHHHHhcCCCCC-ccCCccchhHHHHH-HHHHHHHcCCCcEE
Q 001570 791 ----------------------------------IPYFDAIMLHMKSYDS-PADGKSSFQVEMSE-IRSIVTATTSRSLV 834 (1051)
Q Consensus 791 ----------------------------------i~~~d~i~~~~~~~d~-~~~~~stfs~e~~~-~~~il~~a~~~sLl 834 (1051)
-+...+|+..+|.... ..+....||+|-+. ++.+.+...+|.|+
T Consensus 355 e~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLL 434 (807)
T KOG0066|consen 355 EAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLL 434 (807)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceee
Confidence 0112234444444322 23444567777654 44456667899999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 835 LIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 835 LLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
+|||||++||... ...+-+||.--..|.+++|||..+.+.
T Consensus 435 MLDEPTNHLDLNA----VIWLdNYLQgWkKTLLIVSHDQgFLD~ 474 (807)
T KOG0066|consen 435 MLDEPTNHLDLNA----VIWLDNYLQGWKKTLLIVSHDQGFLDS 474 (807)
T ss_pred eecCCccccccce----eeehhhHHhhhhheeEEEecccchHHH
Confidence 9999999999854 245567777667899999999887653
No 431
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.77 E-value=4.8e-08 Score=100.78 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=92.7
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhH----------------------------HhhhcceeecCC
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS----------------------------LLGICGLMVPAE 787 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~----------------------------~la~~G~~vpa~ 787 (1051)
|-..+.+.+++ |++-+++|.+|||||-..|.|+|+. +.++..++++++
T Consensus 18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQe 97 (330)
T COG4170 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcC
Confidence 44567888888 8999999999999999999999986 123334455554
Q ss_pred CCC---------------hhh-----------------HHHHHHhcCCCCCccCCccchh-----HHHHHHHHHHHHcCC
Q 001570 788 SAS---------------IPY-----------------FDAIMLHMKSYDSPADGKSSFQ-----VEMSEIRSIVTATTS 830 (1051)
Q Consensus 788 ~~~---------------i~~-----------------~d~i~~~~~~~d~~~~~~stfs-----~e~~~~~~il~~a~~ 830 (1051)
+.. +|. .-.++.++|+.|-.+- .++|- +|-+++..+++.+..
T Consensus 98 P~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDI-M~SYP~ElTeGE~QKVMIA~A~Anq 176 (330)
T COG4170 98 PQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDI-MRSYPYELTEGECQKVMIAIALANQ 176 (330)
T ss_pred chhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHH-HHhCcchhccCcceeeeeehhhccC
Confidence 321 010 0124455565543211 11221 334445556777999
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh
Q 001570 831 RSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 831 ~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
|.|+|-||||+.++|.....+...+...-...|.++++++||+....
T Consensus 177 PrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is 223 (330)
T COG4170 177 PRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMIS 223 (330)
T ss_pred CceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHH
Confidence 99999999999999999888855544444457899999999876543
No 432
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=2e-08 Score=115.81 Aligned_cols=138 Identities=13% Similarity=0.099 Sum_probs=89.6
Q ss_pred ccCCCc-eeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH-hhhcce--------eecCCCCC--------h---
Q 001570 737 DAAEGS-AVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL-LGICGL--------MVPAESAS--------I--- 791 (1051)
Q Consensus 737 ~~~~~~-~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~-la~~G~--------~vpa~~~~--------i--- 791 (1051)
.+..+. ..+..+++ .+-+.++|+||.||||++|++.+-.- ...+-. +..|.... +
T Consensus 371 ~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~ 450 (582)
T KOG0062|consen 371 EYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFM 450 (582)
T ss_pred cCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHH
Confidence 344444 44555555 46789999999999999999987431 110000 11110000 0
Q ss_pred ---------hhHHHHHHhcCCCCCc-cCCccchhHHHHH-HHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Q 001570 792 ---------PYFDAIMLHMKSYDSP-ADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD 860 (1051)
Q Consensus 792 ---------~~~d~i~~~~~~~d~~-~~~~stfs~e~~~-~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~ 860 (1051)
.-+..-+..+|+...+ .....++|+|++- ++.+.....+|.|++|||||+.||...- .++.+.|+
T Consensus 451 ~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl----~AL~~Al~ 526 (582)
T KOG0062|consen 451 EKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSL----GALAKALK 526 (582)
T ss_pred HHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHH----HHHHHHHH
Confidence 0122344566766554 3456789999875 5555666899999999999999999664 44555556
Q ss_pred cCCcEEEEeccChhhhhC
Q 001570 861 NIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 861 ~~g~~vi~~TH~~el~~l 878 (1051)
+-+-.||++|||.++...
T Consensus 527 ~F~GGVv~VSHd~~fi~~ 544 (582)
T KOG0062|consen 527 NFNGGVVLVSHDEEFISS 544 (582)
T ss_pred hcCCcEEEEECcHHHHhh
Confidence 656679999999999874
No 433
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.73 E-value=7.8e-08 Score=113.05 Aligned_cols=146 Identities=16% Similarity=0.164 Sum_probs=100.1
Q ss_pred eeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH---------------------hhhcceeecCCCCCh------h
Q 001570 744 VHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL---------------------LGICGLMVPAESASI------P 792 (1051)
Q Consensus 744 vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~---------------------la~~G~~vpa~~~~i------~ 792 (1051)
.++|+|| |++++|.|-=|+|+|=++++|.|+-- +.....|||.+...- +
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 4567777 99999999999999999999999541 112233666553211 1
Q ss_pred hH--------------------------HHHHHhcCCC-CCccCCccchhHHHHHHH-HHHHHcCCCcEEEEcCCCCCCC
Q 001570 793 YF--------------------------DAIMLHMKSY-DSPADGKSSFQVEMSEIR-SIVTATTSRSLVLIDEICRGTE 844 (1051)
Q Consensus 793 ~~--------------------------d~i~~~~~~~-d~~~~~~stfs~e~~~~~-~il~~a~~~sLlLLDEp~~GlD 844 (1051)
.. +.....++.. .+.....+++|+|=||.. .....+++|+++||||||+|.|
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID 433 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence 11 1122222221 234456678888877744 4455689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeccChh-hhhCccccccccccee
Q 001570 845 TAKGTCIAGSIIETLDNIGCLGIVSTHLHG-IFSLPLKIKNAAYKAM 890 (1051)
Q Consensus 845 ~~~~~~l~~~ile~L~~~g~~vi~~TH~~e-l~~l~~~~~~i~~~~~ 890 (1051)
.....+| ..+++.|.+.|.+||++|-+++ +..++++.--+..+.+
T Consensus 434 VGAK~eI-y~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri 479 (500)
T COG1129 434 VGAKAEI-YRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRI 479 (500)
T ss_pred cchHHHH-HHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEE
Confidence 9888888 8888889989999998888764 4456654433333333
No 434
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.70 E-value=1.3e-07 Score=101.64 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=43.5
Q ss_pred chhHHHHHHHHH-----HHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCccc
Q 001570 813 SFQVEMSEIRSI-----VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 881 (1051)
Q Consensus 813 tfs~e~~~~~~i-----l~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~ 881 (1051)
.+|+|.+.+..+ +....+..++|||||.++||......++..+ ..+.+ +.-+|++||..++...++.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l-~~~~~-~~Q~ii~Th~~~~~~~a~~ 207 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLL-KELSK-QSQFIITTHNPEMFEDADK 207 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHH-HHHTT-TSEEEEE-S-HHHHTT-SE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccccc-ccccccccccccccccccc
Confidence 778887764332 2235677899999999999999888874444 44443 4789999999998877653
No 435
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.69 E-value=5.3e-08 Score=117.43 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=60.8
Q ss_pred cCCccchhHHHHHHHHHH----HHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCccccc
Q 001570 808 ADGKSSFQVEMSEIRSIV----TATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIK 883 (1051)
Q Consensus 808 ~~~~stfs~e~~~~~~il----~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~ 883 (1051)
-+...|+|+|..|...+. +..+.+.|.||||||.||-+.+-..+ ..++..|.+.|.|||++.|+++....+++..
T Consensus 817 GQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kL-l~VL~rLvd~GnTViVIEHNLdVIk~AD~II 895 (935)
T COG0178 817 GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKL-LEVLHRLVDKGNTVIVIEHNLDVIKTADWII 895 (935)
T ss_pred CCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEecccceEeecCEEE
Confidence 455678888776644433 33778899999999999999998888 7788888889999999999999988877643
No 436
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.62 E-value=8.9e-08 Score=126.88 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=61.4
Q ss_pred ccCCccchhHHHHHHHHHHHHc----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccc
Q 001570 807 PADGKSSFQVEMSEIRSIVTAT----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKI 882 (1051)
Q Consensus 807 ~~~~~stfs~e~~~~~~il~~a----~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~ 882 (1051)
+.+...|+|+|..|...+.... ..+.|+||||||.||++.+-..+ ..+++.|.+.|.|+|++.|+.++...+++.
T Consensus 1693 LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~L-l~~l~~L~~~g~tvivieH~~~~i~~aD~i 1771 (1809)
T PRK00635 1693 LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSAL-LVQLRTLVSLGHSVIYIDHDPALLKQADYL 1771 (1809)
T ss_pred CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHH-HHHHHHHHhcCCeEEEEeCCHHHHHhCCEE
Confidence 4566678998777755544443 23689999999999999998888 666777889999999999999999887765
Q ss_pred cc
Q 001570 883 KN 884 (1051)
Q Consensus 883 ~~ 884 (1051)
..
T Consensus 1772 id 1773 (1809)
T PRK00635 1772 IE 1773 (1809)
T ss_pred EE
Confidence 43
No 437
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.58 E-value=1.7e-07 Score=103.83 Aligned_cols=115 Identities=20% Similarity=0.216 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCC-ChhhHHHHHHhc-CCCCCc-cCCccch-----hHHHHHHHH
Q 001570 752 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESA-SIPYFDAIMLHM-KSYDSP-ADGKSSF-----QVEMSEIRS 823 (1051)
Q Consensus 752 ~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~-~i~~~d~i~~~~-~~~d~~-~~~~stf-----s~e~~~~~~ 823 (1051)
.-++|.||||||||||++.+++++.....-..+..... .+..-.++...+ +..+.. ....+-+ ..+|.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~---- 187 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMM---- 187 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHH----
Confidence 46899999999999999999998643321111111110 010001121111 111110 0000000 12222
Q ss_pred HHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 824 IVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 824 il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
.+..+.+|+++|+|||++. ....++++.+. .|.++|++||+.++.+.
T Consensus 188 ~~i~~~~P~villDE~~~~-------e~~~~l~~~~~-~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 188 MLIRSMSPDVIVVDEIGRE-------EDVEALLEALH-AGVSIIATAHGRDVEDL 234 (270)
T ss_pred HHHHhCCCCEEEEeCCCcH-------HHHHHHHHHHh-CCCEEEEEechhHHHHH
Confidence 2223579999999999742 22356666665 69999999998776544
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.51 E-value=5.3e-07 Score=98.04 Aligned_cols=121 Identities=13% Similarity=0.157 Sum_probs=69.2
Q ss_pred ceEEEEEcCCCCCcchH-HHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCC--ccCC------c-cchhHH--H
Q 001570 751 QSLFLLTGPNGGGKSSL-LRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDS--PADG------K-SSFQVE--M 818 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTL-Lk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~--~~~~------~-stfs~e--~ 818 (1051)
|++++|+||||+||||+ ++.+++.+.....+.|+..+...-..+..+ ..+|.... ...+ . ..++.. .
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH-HHhCCchHHHhhcCcEEEEEecccccChHHH
Confidence 78999999999999999 677777655444455665443322222222 23332110 0000 0 011111 1
Q ss_pred H-HHHHHHHH--cCCCcEEEEcCCCCCC----CHHHHHHHHHHHHHHHHcCCcEEEEeccChh
Q 001570 819 S-EIRSIVTA--TTSRSLVLIDEICRGT----ETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 874 (1051)
Q Consensus 819 ~-~~~~il~~--a~~~sLlLLDEp~~Gl----D~~~~~~l~~~ile~L~~~g~~vi~~TH~~e 874 (1051)
. .+..++.. ..+|+++++|||++++ |+.....+ ..+++.+++.|.++++ ||+..
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l-~~~l~~l~~~g~tvi~-t~~~~ 163 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDL-MAFFKRISSLNKVIIL-TANPK 163 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHH-HHHHHHHHhCCCEEEE-Eeccc
Confidence 1 12233333 3579999999999999 66555555 5566767677886555 56544
No 439
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=3.1e-07 Score=102.25 Aligned_cols=58 Identities=7% Similarity=0.068 Sum_probs=37.7
Q ss_pred chhHHHHHHHHHH-HH---------cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhh
Q 001570 813 SFQVEMSEIRSIV-TA---------TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 875 (1051)
Q Consensus 813 tfs~e~~~~~~il-~~---------a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el 875 (1051)
..|.++++...+. .. ..+|+++|||||++++|+.....+. +.+.+.+ .++++||+.+.
T Consensus 183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~----~~l~~~~-q~ii~~~~~~~ 250 (270)
T cd03242 183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALL----DAIEGRV-QTFVTTTDLAD 250 (270)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHH----HHhhcCC-CEEEEeCCchh
Confidence 4577777754443 22 3799999999999999998866653 3333334 35555554443
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.37 E-value=1.7e-06 Score=90.30 Aligned_cols=121 Identities=18% Similarity=0.164 Sum_probs=71.4
Q ss_pred EEEEEcCCCCCcchHHHHHHhhHH-hhhcceeecCCCCChhhHHHHHHhcCCC----------CCccCCccchhHHHHH-
Q 001570 753 LFLLTGPNGGGKSSLLRSICAASL-LGICGLMVPAESASIPYFDAIMLHMKSY----------DSPADGKSSFQVEMSE- 820 (1051)
Q Consensus 753 i~~ItGpNGsGKSTLLk~I~gl~~-la~~G~~vpa~~~~i~~~d~i~~~~~~~----------d~~~~~~stfs~e~~~- 820 (1051)
+++|.||.|+|||||.-.++--.. -.....|+..+.. ...+.+.+..+|.. .........++.+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~-~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES-PEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 368999999999999887755432 2223345543322 12222223333322 1111222233444333
Q ss_pred ----HHHHHH--HcCCCcEEEEcCCCCCCC---HHHHHHHHHHHHHHHHcCCcEEEEeccChhh
Q 001570 821 ----IRSIVT--ATTSRSLVLIDEICRGTE---TAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 875 (1051)
Q Consensus 821 ----~~~il~--~a~~~sLlLLDEp~~GlD---~~~~~~l~~~ile~L~~~g~~vi~~TH~~el 875 (1051)
+..+.. ...+|+++++|||++.+| +.....+ ..+++.+++.|.++|+++|....
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i-~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEI-RRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHH-HHHHHHHHHCCCEEEEEeccccC
Confidence 122222 246899999999999998 5444444 66777788789999999998765
No 441
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.37 E-value=2.6e-06 Score=85.91 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=69.5
Q ss_pred EEEEEcCCCCCcchHHHHHHhhHHhh-hcceeecCCCCChhhHHHH--HHhcCCCCCcc---CCccch-hHHHHHHHHHH
Q 001570 753 LFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAI--MLHMKSYDSPA---DGKSSF-QVEMSEIRSIV 825 (1051)
Q Consensus 753 i~~ItGpNGsGKSTLLk~I~gl~~la-~~G~~vpa~~~~i~~~d~i--~~~~~~~d~~~---~~~stf-s~e~~~~~~il 825 (1051)
+++|+||||+||||+++.+++..... ....|+..+.......... +...+..+... ...... .....+.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 47899999999999999998876431 1122444433322222111 11111111110 000111 11222333445
Q ss_pred HHcCCCcEEEEcCCCCCCCHH---------HHHHHHHHHHHHHHcCCcEEEEeccChhh
Q 001570 826 TATTSRSLVLIDEICRGTETA---------KGTCIAGSIIETLDNIGCLGIVSTHLHGI 875 (1051)
Q Consensus 826 ~~a~~~sLlLLDEp~~GlD~~---------~~~~l~~~ile~L~~~g~~vi~~TH~~el 875 (1051)
....++.++++||+++-++.. ........+.+.+++.++++|+++|....
T Consensus 81 ~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 81 RERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred HhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 557889999999999544332 22344477777777789999999997653
No 442
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=98.35 E-value=1e-06 Score=93.18 Aligned_cols=136 Identities=17% Similarity=0.213 Sum_probs=95.3
Q ss_pred ccCCC----CCCCccceEecCCCccCCCHHHHHHhhhcCCcccHHHHHHHHHhHhhhh-------------hcCCCcHHH
Q 001570 380 GAIPT----EGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV-------------TCSIPEFTC 442 (1051)
Q Consensus 380 ell~~----~~~~sLl~v~l~~t~t~mg~r~LR~llL~P~~~sl~~~I~~r~t~mg~~-------------l~~i~dler 442 (1051)
+++++ .+..||++. +++|.|++|.|+||+|++.|+. +.. .|++|++.++.+ +..++|+++
T Consensus 8 ~i~~~~~~~~~~~sL~~~-ln~t~T~~Gkr~L~~~l~~P~~-d~~-~I~~R~~~v~~~~~n~~~~~~~~~~l~~~~di~~ 84 (204)
T PF05192_consen 8 EIFENSRSGKKKGSLFSL-LNRTSTPMGKRLLRSWLLQPLT-DIE-EIEKRQDAVEEFLQNEELREELRSILKKIPDIER 84 (204)
T ss_dssp TSSSBTTTSSSSTSHHHH-H---SSHHHHHHHHHHHHS-BS--HH-HHHHHHHHHHHHHHTHHHHHHHHHHHTTC-SHHH
T ss_pred cCCCCCCCCCCCCcHHHH-HhcCCChHHHHHHHHHHhCccc-hHH-HHHHHHHHHHHHHHhhhHhhhhhhhhhccchHHH
Confidence 66653 233499999 8999999999999999999999 888 999999999986 789999999
Q ss_pred HHHHHhcCCCCcccHHHHHHHHHHHHHhhcChHHHHHHHhccCchhhcccchhhHHHhhhH---hHHHHHHHHHhhhccC
Q 001570 443 LVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEE---CRLASVRIGEMISLDG 519 (1051)
Q Consensus 443 L~~~L~~p~a~~~dl~~I~~rL~aV~~l~~~~~l~~~L~~~l~~~~~~~g~~~dlerl~~~---~~~~~~~i~~~i~l~~ 519 (1051)
+..++..+.+++.++..|...+..+ ..+.+.+.......+ .+.++.+. +......++..+. +
T Consensus 85 ~l~~l~~~~~~~~~~~~l~~~l~~~------~~i~~~~~~~~~~~~-------~L~~l~~~l~~~~~l~~~i~~~id--~ 149 (204)
T PF05192_consen 85 ILKRLRSGRASPQDLLKLYKTLRSI------IEIKKLLSERLESSP-------LLRKLLSSLPDFSELLDEIESTID--E 149 (204)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHH------HHHHHHHHCTSSSTH-------HHHHHHHHHCSHHHHHHHHHHHBH--T
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHH------HHHHHHHHhhcccHH-------HHHHHHHhcccHHHHHHHHHHHHh--c
Confidence 9999999999999999999999999 666655443332211 23333333 3455666777776 4
Q ss_pred CchhhhccCCCCCh
Q 001570 520 ESDQKICSYDNIPS 533 (1051)
Q Consensus 520 e~p~~~~~~~~I~~ 533 (1051)
+.+.....+++|.+
T Consensus 150 ~~~~~~~~~~~I~~ 163 (204)
T PF05192_consen 150 DKSLAIREQDIIRD 163 (204)
T ss_dssp S-CCHCTTSSSBST
T ss_pred CcHHHHhcccHHHH
Confidence 44444455555544
No 443
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.34 E-value=1e-06 Score=94.56 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=42.9
Q ss_pred chhHHHHHHHHHHHH---cCCC-cEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh
Q 001570 813 SFQVEMSEIRSIVTA---TTSR-SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 876 (1051)
Q Consensus 813 tfs~e~~~~~~il~~---a~~~-sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~ 876 (1051)
.+|.|++++..++.. +... .++++|||-++|.|.....++ .++..+.+.+.-+|++||.+.+.
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCccCCEEEEeCccchhc
Confidence 347888886443322 3333 999999999999998887775 44454444578999999987763
No 444
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.33 E-value=9.1e-07 Score=99.97 Aligned_cols=128 Identities=12% Similarity=0.145 Sum_probs=88.1
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhhhc-------ceeecCCCCC-----h---------------hhHHHHHHhcCC
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLGIC-------GLMVPAESAS-----I---------------PYFDAIMLHMKS 803 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la~~-------G~~vpa~~~~-----i---------------~~~d~i~~~~~~ 803 (1051)
.+++..+|.||-|||||+++++|.+..... .+|-|+.... . .++..++.-+..
T Consensus 367 SeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~i 446 (592)
T KOG0063|consen 367 SEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQI 446 (592)
T ss_pred ceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhH
Confidence 478999999999999999999996422211 2233433110 0 011223333334
Q ss_pred CCCccCCccchhHH-HHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 804 YDSPADGKSSFQVE-MSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 804 ~d~~~~~~stfs~e-~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
++-..+...++|++ +++.+.++..-...++.++|||.+-+|...+...+..+.+.+...+.|..++.||.-.+..
T Consensus 447 e~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTY 522 (592)
T KOG0063|consen 447 ENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATY 522 (592)
T ss_pred HHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHh
Confidence 44445555677765 5557777877788899999999999999777777666777777778899999999877754
No 445
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.30 E-value=1.9e-06 Score=109.58 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=67.7
Q ss_pred HHhcCCCCC-ccCCccchhHHHHHHHHHHHH-cCCC--cEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccCh
Q 001570 798 MLHMKSYDS-PADGKSSFQVEMSEIRSIVTA-TTSR--SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 873 (1051)
Q Consensus 798 ~~~~~~~d~-~~~~~stfs~e~~~~~~il~~-a~~~--sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~ 873 (1051)
+..+|+... +.+...++|+|++|...++.. +.+| .++||||||+|||+.+...+ ..+++.+++.|.|||++||++
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L-~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERL-INTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHH-HHHHHHHHhCCCEEEEEECCH
Confidence 455676543 678889999999986665444 5554 89999999999999998888 666667777899999999999
Q ss_pred hhhhCccccccc
Q 001570 874 GIFSLPLKIKNA 885 (1051)
Q Consensus 874 el~~l~~~~~~i 885 (1051)
+....+++...+
T Consensus 550 ~~i~~aD~vi~L 561 (924)
T TIGR00630 550 ETIRAADYVIDI 561 (924)
T ss_pred HHHhhCCEEEEe
Confidence 987766554433
No 446
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.29 E-value=1.4e-06 Score=111.01 Aligned_cols=88 Identities=13% Similarity=0.092 Sum_probs=69.4
Q ss_pred HHHhcCCCCC-ccCCccchhHHHHHHHHHHHH-cCCC--cEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccC
Q 001570 797 IMLHMKSYDS-PADGKSSFQVEMSEIRSIVTA-TTSR--SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 872 (1051)
Q Consensus 797 i~~~~~~~d~-~~~~~stfs~e~~~~~~il~~-a~~~--sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~ 872 (1051)
.+..+|+... +.+...++|+|++|...++.. +.+| .++||||||+|||+.+...+ ..+++.|++.|.|||++||+
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L-~~~L~~L~~~G~TVIvVeH~ 550 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRL-IETLKHLRDLGNTLIVVEHD 550 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHH-HHHHHHHHhCCCEEEEEeCC
Confidence 4566777654 688899999999986666444 5555 89999999999999998888 66666678889999999999
Q ss_pred hhhhhCccccccc
Q 001570 873 HGIFSLPLKIKNA 885 (1051)
Q Consensus 873 ~el~~l~~~~~~i 885 (1051)
++.+..+++...+
T Consensus 551 ~~~i~~aD~vi~L 563 (943)
T PRK00349 551 EDTIRAADYIVDI 563 (943)
T ss_pred HHHHHhCCEEEEe
Confidence 9987665544333
No 447
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=98.26 E-value=4.5e-05 Score=90.40 Aligned_cols=96 Identities=15% Similarity=0.258 Sum_probs=77.8
Q ss_pred eeecHHhhh--ccCCCC--C--CCccceEecCCCccCCCHHHHHHhhhcCCcccHHHHHHHHHhHhhhh-----------
Q 001570 371 LHLGTATQI--GAIPTE--G--IPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKV----------- 433 (1051)
Q Consensus 371 LyLd~~Tq~--ell~~~--~--~~sLl~v~l~~t~t~mg~r~LR~llL~P~~~sl~~~I~~r~t~mg~~----------- 433 (1051)
|.|+..|.. |++.+. + ..||||+ +|+|+|..|.|.||.|...|+. ++- .|.+|+++|+.+
T Consensus 458 Mtls~ntLq~Leif~nqtd~~~kGSLfwv-ldhT~TsfG~RmLr~WvtkPLv-d~~-~I~eRLDAVeeitshssnS~vf~ 534 (1070)
T KOG0218|consen 458 MTLSPNTLQSLEIFTNQTDGSEKGSLFWV-LDHTRTSFGLRMLREWVTKPLV-DVH-QIEERLDAVEEITSHSSNSIVFE 534 (1070)
T ss_pred eeechhhhhceeeeeecCCCCcccceEEE-eccchhHHHHHHHHHHHhcccc-cHH-HHHHHHHHHHHHHhcccchHHHH
Confidence 788888776 777763 2 3499999 9999999999999999999999 998 999999999975
Q ss_pred -----hcCCCcHHHHHHHHhcCCCCcc-cHH-HHHHHHHHHHH
Q 001570 434 -----TCSIPEFTCLVKLLELREANHI-EFC-RIKNVLDEILH 469 (1051)
Q Consensus 434 -----l~~i~dlerL~~~L~~p~a~~~-dl~-~I~~rL~aV~~ 469 (1051)
+...||+.|=..||-.+.++++ ++- -++.-..++.+
T Consensus 535 si~~~l~rlpDl~rgL~rIy~~tCtp~~eff~vlk~iy~a~s~ 577 (1070)
T KOG0218|consen 535 SINQMLNRLPDLLRGLNRIYYGTCTPRKEFFFVLKQIYSAVSH 577 (1070)
T ss_pred HHHHHHHhCcHhHhhHHHHhcccCCcHHHHHHHHHHHHHHHHH
Confidence 7789999999999999998883 333 34444444433
No 448
>PRK13695 putative NTPase; Provisional
Probab=98.19 E-value=3.5e-06 Score=87.44 Aligned_cols=51 Identities=18% Similarity=0.196 Sum_probs=32.3
Q ss_pred HcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcc
Q 001570 827 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 880 (1051)
Q Consensus 827 ~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~ 880 (1051)
...+|+++|+|||+. ++..+ ......+.+ +.+.+.++|+++|+.......+
T Consensus 93 ~l~~~~~lllDE~~~-~e~~~-~~~~~~l~~-~~~~~~~~i~v~h~~~~~~~~~ 143 (174)
T PRK13695 93 ALEEADVIIIDEIGK-MELKS-PKFVKAVEE-VLDSEKPVIATLHRRSVHPFVQ 143 (174)
T ss_pred ccCCCCEEEEECCCc-chhhh-HHHHHHHHH-HHhCCCeEEEEECchhhHHHHH
Confidence 357899999999742 33322 233233333 3367899999999865544433
No 449
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.11 E-value=2.4e-05 Score=75.80 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCCcchHHHHHHhhHHhhh-cceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHHH-HHHHHHHHHcC
Q 001570 752 SLFLLTGPNGGGKSSLLRSICAASLLGI-CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM-SEIRSIVTATT 829 (1051)
Q Consensus 752 ~i~~ItGpNGsGKSTLLk~I~gl~~la~-~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~-~~~~~il~~a~ 829 (1051)
..++|+||+|+||||+++.++..+.... ...++-.+........... ..............+ .+.........
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-----LIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-----hhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999988754433 1222222221111110100 000001111111111 11111122233
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHH-----HHHHHHHcCCcEEEEeccC
Q 001570 830 SRSLVLIDEICRGTETAKGTCIAG-----SIIETLDNIGCLGIVSTHL 872 (1051)
Q Consensus 830 ~~sLlLLDEp~~GlD~~~~~~l~~-----~ile~L~~~g~~vi~~TH~ 872 (1051)
.++++++||+.+-.+......... .........+..+|+++|.
T Consensus 78 ~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 78 KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 479999999999999866554432 1233333457788888885
No 450
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.08 E-value=1.4e-05 Score=87.06 Aligned_cols=123 Identities=18% Similarity=0.170 Sum_probs=68.8
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhh-HHhhhcceeecCCCCChhhHHHHHHhcCCC--CCccC-----------CccchhH
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAA-SLLGICGLMVPAESASIPYFDAIMLHMKSY--DSPAD-----------GKSSFQV 816 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl-~~la~~G~~vpa~~~~i~~~d~i~~~~~~~--d~~~~-----------~~stfs~ 816 (1051)
|+++.|+|++|+|||||..+++-- +.....+.|+..+...-....+ +..++.. +.... .....+.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~ 103 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGFEWNST 103 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHH-HHHCCCChhHHHhCCCceEEeccccccccCcc
Confidence 789999999999999999998532 2333445566555432222222 2233321 11001 1111223
Q ss_pred HHHHHHHH-HHHc--CCCcEEEEcCCCCCCC---HHHHHHHHHHHHHHHHcCCcEEEEeccChhh
Q 001570 817 EMSEIRSI-VTAT--TSRSLVLIDEICRGTE---TAKGTCIAGSIIETLDNIGCLGIVSTHLHGI 875 (1051)
Q Consensus 817 e~~~~~~i-l~~a--~~~sLlLLDEp~~GlD---~~~~~~l~~~ile~L~~~g~~vi~~TH~~el 875 (1051)
++.++... ...+ .+++++++|||+..+| ...-..+.. .+..+.+.|.++++++|....
T Consensus 104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 104 LANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVDLGKTILITLHPYAF 167 (234)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCcC
Confidence 34443332 2222 4899999999996544 333223322 234456678999999997543
No 451
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.90 E-value=3.1e-05 Score=82.33 Aligned_cols=111 Identities=15% Similarity=0.214 Sum_probs=58.8
Q ss_pred EEEEEcCCCCCcchHHHHHHhhHHhhhcceeec-CCCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcCCC
Q 001570 753 LFLLTGPNGGGKSSLLRSICAASLLGICGLMVP-AESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 831 (1051)
Q Consensus 753 i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vp-a~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~~ 831 (1051)
+++|+||+||||||+++.+.+.......+..+- .+...+.. +.....+. .........+|...+ ..+ ...+|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~-~~~~~~i~-q~~vg~~~~~~~~~i---~~a--Lr~~p 75 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH-ESKRSLIN-QREVGLDTLSFENAL---KAA--LRQDP 75 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccc-cCccceee-ecccCCCccCHHHHH---HHH--hcCCc
Confidence 689999999999999999877653222222121 11111100 00000000 000111112333222 222 24689
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 832 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 832 sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
+++++||+. |+.. +..+++. ...|..++.++|..+....
T Consensus 76 d~ii~gEir---d~e~----~~~~l~~-a~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 76 DVILVGEMR---DLET----IRLALTA-AETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred CEEEEcCCC---CHHH----HHHHHHH-HHcCCEEEEEecCCcHHHH
Confidence 999999995 5532 2344443 3578999999998766543
No 452
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.86 E-value=6.7e-05 Score=88.63 Aligned_cols=145 Identities=11% Similarity=0.086 Sum_probs=82.8
Q ss_pred CceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeec--CCCCChhhHHHHHHh-cCCC---CCcc-C
Q 001570 741 GSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVP--AESASIPYFDAIMLH-MKSY---DSPA-D 809 (1051)
Q Consensus 741 ~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vp--a~~~~i~~~d~i~~~-~~~~---d~~~-~ 809 (1051)
+..+++++ + |++++|+|+||+|||||+++|++.... ..|.+.- .....+. ++... ++.. ..+. .
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~gvI~~~Gerg~ev~---e~~~~~l~~~~l~r~v~vv 219 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA-DLNVIALIGERGREVR---EFIERDLGPEGLKRSIVVV 219 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEEecCCccHH---HHHHhhcChhhhcCeEEEE
Confidence 44566666 5 899999999999999999999987532 2222211 1111111 11111 1110 1000 1
Q ss_pred CccchhHHHHHHH--------HHHHHcCCCcEEEEc-----------------CC--CCCCCHHHHHHHHHHHHHHHHc-
Q 001570 810 GKSSFQVEMSEIR--------SIVTATTSRSLVLID-----------------EI--CRGTETAKGTCIAGSIIETLDN- 861 (1051)
Q Consensus 810 ~~stfs~e~~~~~--------~il~~a~~~sLlLLD-----------------Ep--~~GlD~~~~~~l~~~ile~L~~- 861 (1051)
..+.-+..++..+ .-.+.-...=|+++| || ++|+||.....+ ..+++.+..
T Consensus 220 ~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l-~~ller~~~~ 298 (438)
T PRK07721 220 ATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAIL-PKLLERTGTN 298 (438)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHH-HHHHHHhcCC
Confidence 1122222222211 111223455677888 86 789999776666 777787763
Q ss_pred -CCc-----EEEEeccChhhhhCcccccccccceeEE
Q 001570 862 -IGC-----LGIVSTHLHGIFSLPLKIKNAAYKAMGT 892 (1051)
Q Consensus 862 -~g~-----~vi~~TH~~el~~l~~~~~~i~~~~~~~ 892 (1051)
.|. ||++.|||++. ..++....+..+++..
T Consensus 299 ~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivl 334 (438)
T PRK07721 299 ASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVL 334 (438)
T ss_pred CCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEE
Confidence 575 99999999884 5555555566666554
No 453
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.84 E-value=2.1e-05 Score=100.35 Aligned_cols=141 Identities=17% Similarity=0.196 Sum_probs=94.3
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHH--------hh------------hcceeecCCCCChh-----
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASL--------LG------------ICGLMVPAESASIP----- 792 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~--------la------------~~G~~vpa~~~~i~----- 792 (1051)
..+++|++. |+++.+.||-|||||||+|+++|-.. .. ..-.|.++....+|
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 468889887 89999999999999999999999761 00 00112222221111
Q ss_pred ---------------------------hHHHHHHhcCCCCCccC-----CccchhHHHHHHHHHH-HHcCCCcEEEEcCC
Q 001570 793 ---------------------------YFDAIMLHMKSYDSPAD-----GKSSFQVEMSEIRSIV-TATTSRSLVLIDEI 839 (1051)
Q Consensus 793 ---------------------------~~d~i~~~~~~~d~~~~-----~~stfs~e~~~~~~il-~~a~~~sLlLLDEp 839 (1051)
..|.++.-+|+....+. ...-.|+|.++...+. ..+.+++.+.+||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 22345555565443321 2234566666644443 33788999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccCh--hhhhCcccc
Q 001570 840 CRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH--GIFSLPLKI 882 (1051)
Q Consensus 840 ~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~--el~~l~~~~ 882 (1051)
++|||......++..+...-+..+.|++++-|.. |..++.+..
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v 332 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDV 332 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhhe
Confidence 9999999999997777776666788999988864 444554443
No 454
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.84 E-value=0.0001 Score=85.91 Aligned_cols=148 Identities=15% Similarity=0.163 Sum_probs=101.2
Q ss_pred CCceeeeeEee----ceEEEEEcCCCCCcchHHHHHHhhHHhh----------------------hcceeecCCCCC---
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLLG----------------------ICGLMVPAESAS--- 790 (1051)
Q Consensus 740 ~~~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~gl~~la----------------------~~G~~vpa~~~~--- 790 (1051)
.+...+.++|| |++++|.|-.|-|-+-|+..|+|+...+ ....|||.+...
T Consensus 269 ~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Gl 348 (501)
T COG3845 269 RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGL 348 (501)
T ss_pred CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCcc
Confidence 34567899999 8999999999999999999999986211 112366765311
Q ss_pred ---hhhH----------------------------HHHHHhcCCC-CCccCCccchhHHHHHH-HHHHHHcCCCcEEEEc
Q 001570 791 ---IPYF----------------------------DAIMLHMKSY-DSPADGKSSFQVEMSEI-RSIVTATTSRSLVLID 837 (1051)
Q Consensus 791 ---i~~~----------------------------d~i~~~~~~~-d~~~~~~stfs~e~~~~-~~il~~a~~~sLlLLD 837 (1051)
++.. .++...+... .+......++|+|-+|. ........+|+|+|+.
T Consensus 349 v~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~ 428 (501)
T COG3845 349 VLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAA 428 (501)
T ss_pred ccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEc
Confidence 1111 1233344433 33444456788776664 4445668999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh-hCcccccccccc
Q 001570 838 EICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYK 888 (1051)
Q Consensus 838 Ep~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~-~l~~~~~~i~~~ 888 (1051)
+||+|+|......+...+++ .++.|+.|+++|-++|++ .+++...-+..+
T Consensus 429 qPTrGLDvgA~~~I~~~l~e-~r~~G~AVLLiS~dLDEil~lsDrIaVi~~G 479 (501)
T COG3845 429 QPTRGLDVGAIEFIHERLLE-LRDAGKAVLLISEDLDEILELSDRIAVIYEG 479 (501)
T ss_pred CCCccccHHHHHHHHHHHHH-HHhcCCEEEEEehhHHHHHHhhheeeeeeCC
Confidence 99999999777777666655 567799999999987654 566554443333
No 455
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.80 E-value=0.0001 Score=90.68 Aligned_cols=116 Identities=16% Similarity=0.105 Sum_probs=74.0
Q ss_pred cchhHHHHHHHH-HHHHcC----CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcccccccc
Q 001570 812 SSFQVEMSEIRS-IVTATT----SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAA 886 (1051)
Q Consensus 812 stfs~e~~~~~~-il~~a~----~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~ 886 (1051)
..+|+|+++... +++.+. +|+++|||||++|+|+.....+. .++..+.+ +.+||++||++.++..++..-.+.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~-~~l~~l~~-~~~vi~iTH~~~~~~~ad~~~~l~ 516 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIA-KKLAQLSE-RHQVLCVTHLPQVAAHADAHFKVE 516 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhc-CCEEEEEEChHHHHHhcCeEEEEE
Confidence 367787777444 444444 46999999999999998888885 45555654 799999999999887554322221
Q ss_pred cceeEEEEeCCceeeeeeeecCCCCCcHHHHHHHHcC---CCHHHHHHHHHHHH
Q 001570 887 YKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREG---VPETIIQRAEDLYI 937 (1051)
Q Consensus 887 ~~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~G---lp~~vi~rA~~~~~ 937 (1051)
.. ..++. ++.-+.-..++---.++|+++| +.+.-++.|++++.
T Consensus 517 k~-----~~~~~---t~s~i~~L~~~~r~~EiArml~G~~~t~~~~~~A~~ll~ 562 (563)
T TIGR00634 517 KE-----GLDGR---TATRVRPLSGEERVAELARMLAGLEKSDLTLAHAQELLE 562 (563)
T ss_pred Ec-----cCCCc---EEEEEEECCccHHHHHHHHHhCCCCccHHHHHHHHHHhc
Confidence 11 11121 1111111233344568999984 35777888888863
No 456
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=97.79 E-value=2.8e-05 Score=87.87 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=73.5
Q ss_pred ccHHHHHHHHHhHhhhhhcCCCcHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhhcChHHHHHHHhccCchhhcccchhh
Q 001570 417 YEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKID 496 (1051)
Q Consensus 417 ~sl~~~I~~r~t~mg~~l~~i~dlerL~~~L~~p~a~~~dl~~I~~rL~aV~~l~~~~~l~~~L~~~l~~~~~~~g~~~d 496 (1051)
+||++.+++|.|++|. |+|+.|+.+| +.|...|.+|++.|+++.+++.+...++..+..++ |
T Consensus 2 ~sL~~~l~~~~T~~G~--------r~L~~wl~~P---l~~~~~I~~R~~~v~~~~~~~~l~~~l~~~L~~~~-------D 63 (308)
T smart00533 2 GSLFELLNHTKTPMGK--------RLLRRWLLQP---LLDLKEINERLDAVEELVENPELRQKLRQLLKRIP-------D 63 (308)
T ss_pred CCHHHHHccCCCcHHH--------HHHHHHHHhh---CCCHHHHHHHHHHHHHHHhChHHHHHHHHHHccCC-------c
Confidence 4889999999999999 9999999999 99999999999999999999999999988887766 9
Q ss_pred HHHhhhHhHHHHHHHHHhhhc
Q 001570 497 FETLVEECRLASVRIGEMISL 517 (1051)
Q Consensus 497 lerl~~~~~~~~~~i~~~i~l 517 (1051)
+++++.++......+.+++.+
T Consensus 64 i~~~l~~~~~~~~~~~el~~l 84 (308)
T smart00533 64 LERLLSRIERGRASPRDLLRL 84 (308)
T ss_pred HHHHHHHHHcCCCCHHHHHHH
Confidence 999999987665556666654
No 457
>PRK10869 recombination and repair protein; Provisional
Probab=97.63 E-value=0.00031 Score=85.95 Aligned_cols=115 Identities=16% Similarity=0.145 Sum_probs=73.7
Q ss_pred chhHHHHH-HHHHHHHc----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCccccccccc
Q 001570 813 SFQVEMSE-IRSIVTAT----TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKIKNAAY 887 (1051)
Q Consensus 813 tfs~e~~~-~~~il~~a----~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~~~~i~~ 887 (1051)
.+|+|+++ +..++..+ .+|+++|+|||++|+|+..+..+ ..++..+.+ +.++|++||++.++..++..-.+..
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v-~~~l~~l~~-~~qvi~iTH~~~~~~~ad~~~~v~k 507 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVV-GKLLRQLGE-STQVMCVTHLPQVAGCGHQHFFVSK 507 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHhc-CCEEEEEecCHHHHHhCCEEEEEec
Confidence 56777666 44444444 36899999999999999888877 455556654 6899999999998876654322211
Q ss_pred ceeEEEEeCCceeeeeeeecCCCCCcHHHHHHHHcC---CCHHHHHHHHHHHH
Q 001570 888 KAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREG---VPETIIQRAEDLYI 937 (1051)
Q Consensus 888 ~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~G---lp~~vi~rA~~~~~ 937 (1051)
...++. ++.-+.--.++.---++|+++| +.+.-++.|++++.
T Consensus 508 -----~~~~~~---t~s~i~~L~~~~R~~EiARMl~G~~~t~~~~~~A~eLl~ 552 (553)
T PRK10869 508 -----ETDGGM---TETHMQPLDKKARLQELARLLGGSEVTRNTLANAKELLA 552 (553)
T ss_pred -----cccCCe---eeEEEEECChhHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 111121 2221111233344568999983 35777889988864
No 458
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.63 E-value=5.6e-05 Score=85.92 Aligned_cols=130 Identities=17% Similarity=0.150 Sum_probs=83.9
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCC-------------------------C--CChhhHHHHH-----
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAE-------------------------S--ASIPYFDAIM----- 798 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~-------------------------~--~~i~~~d~i~----- 798 (1051)
|++++++|-||-||||-+|.++|-+.....+..-|.+ . ....++|++.
T Consensus 100 g~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~k~ 179 (592)
T KOG0063|consen 100 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAVKG 179 (592)
T ss_pred chhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHHHH
Confidence 7899999999999999999999965211111000100 0 0011223222
Q ss_pred -------------------HhcCCCCCccCCccchhH-HHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH
Q 001570 799 -------------------LHMKSYDSPADGKSSFQV-EMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIET 858 (1051)
Q Consensus 799 -------------------~~~~~~d~~~~~~stfs~-e~~~~~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~ 858 (1051)
..+.+...+.+....+++ |+++.+.++..+...++.++|||.+-||...+...+ ..++.
T Consensus 180 ~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA-~~IRs 258 (592)
T KOG0063|consen 180 TVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAA-ITIRS 258 (592)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHH-HHHHH
Confidence 222222222333334443 455566667778999999999999999998888874 44555
Q ss_pred HHcCCcEEEEeccChhhhhCccc
Q 001570 859 LDNIGCLGIVSTHLHGIFSLPLK 881 (1051)
Q Consensus 859 L~~~g~~vi~~TH~~el~~l~~~ 881 (1051)
+.+-..-+|++.||+...++...
T Consensus 259 l~~p~~YiIVVEHDLsVLDylSD 281 (592)
T KOG0063|consen 259 LINPDRYIIVVEHDLSVLDYLSD 281 (592)
T ss_pred hhCCCCeEEEEEeechHHHhhhc
Confidence 66667899999999998876544
No 459
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.62 E-value=0.00042 Score=75.82 Aligned_cols=122 Identities=23% Similarity=0.305 Sum_probs=67.3
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhhh--cc-----------eeecCCCCC---hhhHHHHHHhcCCCCCccC-----
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLGI--CG-----------LMVPAESAS---IPYFDAIMLHMKSYDSPAD----- 809 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la~--~G-----------~~vpa~~~~---i~~~d~i~~~~~~~d~~~~----- 809 (1051)
|.+.+|+||.|+|||||.-.++..+.... .| .|+..+... ...+..+...++..+...+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~ 80 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS 80 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence 45789999999999999999976543210 11 233333211 1223334444432111100
Q ss_pred ----Cccchh----HHHHHHHHHHHH--cCCCcEEEEcCCCC------CCCHHHHHHHHHHHHHHHHcCCcEEEEeccCh
Q 001570 810 ----GKSSFQ----VEMSEIRSIVTA--TTSRSLVLIDEICR------GTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 873 (1051)
Q Consensus 810 ----~~stfs----~e~~~~~~il~~--a~~~sLlLLDEp~~------GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~ 873 (1051)
...... .....+..++.. ..+|++||+| |.+ ..|+.....+...+.+...+.|+++|+++|..
T Consensus 81 g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 81 GRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred cCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 000000 001122223322 4799999999 654 46887776775555554456799999999964
No 460
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.62 E-value=6.1e-05 Score=85.58 Aligned_cols=114 Identities=12% Similarity=0.127 Sum_probs=58.0
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhH-HHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcC
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYF-DAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 829 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~-d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~ 829 (1051)
+..++|+||+||||||+++++++.+.. ..+..+-.+...+..- .+.. .+... ....+.. ...+.++.. ...-.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~-~~~iv~ied~~El~~~~~~~~-~l~~~-~~~~~~~--~~~~~~~l~-~~Lr~ 217 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPK-DERIITIEDTREIFLPHPNYV-HLFYS-KGGQGLA--KVTPKDLLQ-SCLRM 217 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCc-cccEEEEcCccccCCCCCCEE-EEEec-CCCCCcC--ccCHHHHHH-HHhcC
Confidence 356899999999999999999876421 1121111111111100 0000 00000 0000111 112222211 12358
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 830 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 830 ~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
+|+++++|||.. .+. ..+++.+...+..++.++|..+....
T Consensus 218 ~pd~ii~gE~r~-------~e~-~~~l~a~~~g~~~~i~T~Ha~~~~~~ 258 (308)
T TIGR02788 218 RPDRIILGELRG-------DEA-FDFIRAVNTGHPGSITTLHAGSPEEA 258 (308)
T ss_pred CCCeEEEeccCC-------HHH-HHHHHHHhcCCCeEEEEEeCCCHHHH
Confidence 999999999995 122 45566665333456899998775554
No 461
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.60 E-value=0.00026 Score=69.24 Aligned_cols=107 Identities=20% Similarity=0.189 Sum_probs=58.0
Q ss_pred eEEEEEcCCCCCcchHHHHHHhhHHhhh-cceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcCC
Q 001570 752 SLFLLTGPNGGGKSSLLRSICAASLLGI-CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 830 (1051)
Q Consensus 752 ~i~~ItGpNGsGKSTLLk~I~gl~~la~-~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~ 830 (1051)
..+.|+||.|+||||+++.++....-.. ...++......-.. ......... ............+
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~-------------~~~~~~~~~~~~~ 84 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGL--VVAELFGHF-------------LVRLLFELAEKAK 84 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhh--HHHHHhhhh-------------hHhHHHHhhccCC
Confidence 5689999999999999999987753111 00111111000000 000000000 1222223334567
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHH-----cCCcEEEEeccChhh
Q 001570 831 RSLVLIDEICRGTETAKGTCIAGSIIETLD-----NIGCLGIVSTHLHGI 875 (1051)
Q Consensus 831 ~sLlLLDEp~~GlD~~~~~~l~~~ile~L~-----~~g~~vi~~TH~~el 875 (1051)
+.++++||.-.. ++.....+ ..+++.+. ..++.+|++|+....
T Consensus 85 ~~~lilDe~~~~-~~~~~~~~-~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 85 PGVLFIDEIDSL-SRGAQNAL-LRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred CeEEEEeChhhh-hHHHHHHH-HHHHHhcCceeccCCCeEEEEecCcccc
Confidence 899999999876 34344444 34444443 257889999987653
No 462
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.57 E-value=0.00021 Score=83.90 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=79.8
Q ss_pred CceeeeeE-ee--ceEEEEEcCCCCCcchHHHHHHhhHHhhhcce--eecCCCCChh-hHHHHHHhcCCCCC-ccCCccc
Q 001570 741 GSAVHNTV-DM--QSLFLLTGPNGGGKSSLLRSICAASLLGICGL--MVPAESASIP-YFDAIMLHMKSYDS-PADGKSS 813 (1051)
Q Consensus 741 ~~~vl~~i-sl--g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~--~vpa~~~~i~-~~d~i~~~~~~~d~-~~~~~st 813 (1051)
+..+++.+ .+ |+.++|.|+||+|||||+++|++.... ..|. ++.+...... ++...+..-++... +....+.
T Consensus 143 GiraID~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd 221 (432)
T PRK06793 143 GIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKA-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSD 221 (432)
T ss_pred CCEEEeccceecCCcEEEEECCCCCChHHHHHHHhccCCC-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCC
Confidence 44555553 22 899999999999999999999987532 1222 2222222222 12222222222221 1233455
Q ss_pred hhHHHHHHHHHHHH--------cCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCcc
Q 001570 814 FQVEMSEIRSIVTA--------TTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPL 880 (1051)
Q Consensus 814 fs~e~~~~~~il~~--------a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~ 880 (1051)
.+..++..+...+. -.++-|+++|+||++.|+. ..+ ...+...-..|-+..+.||...+.+.+.
T Consensus 222 ~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--rei-sl~~~e~p~~G~~~~~~s~l~~L~ERag 293 (432)
T PRK06793 222 ESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSV-DIAVKELPIGGKTLLMESYMKKLLERSG 293 (432)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHH-HHHhcCCCCCCeeeeeeccchhHHHHhc
Confidence 56666654433222 3688999999999999995 444 2233444434778888888766666543
No 463
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.52 E-value=8.1e-05 Score=70.87 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=27.6
Q ss_pred ceeeeeEee----ceEEEEEcCCCCCcchHHHHHH
Q 001570 742 SAVHNTVDM----QSLFLLTGPNGGGKSSLLRSIC 772 (1051)
Q Consensus 742 ~~vl~~isl----g~i~~ItGpNGsGKSTLLk~I~ 772 (1051)
..++++++| |++++|+||||||||||++++.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 467888888 6999999999999999999975
No 464
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.52 E-value=0.00022 Score=76.43 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=28.0
Q ss_pred HHHcCCCcEEEEcCCC-----CCCCHHHHHHHHHHHHHHHHc
Q 001570 825 VTATTSRSLVLIDEIC-----RGTETAKGTCIAGSIIETLDN 861 (1051)
Q Consensus 825 l~~a~~~sLlLLDEp~-----~GlD~~~~~~l~~~ile~L~~ 861 (1051)
...+.+|+++++|||| +|+||.....+ ..++..++.
T Consensus 165 ~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~-~~~~~~~~~ 205 (215)
T PTZ00132 165 RRLTNDPNLVFVGAPALAPEEIQIDPELVAQA-EKELQAAAN 205 (215)
T ss_pred HHHhhcccceecCCcccCCCccccCHHHHHHH-HHHHHHHhh
Confidence 3447899999999999 99999887777 555555543
No 465
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00089 Score=78.68 Aligned_cols=88 Identities=16% Similarity=0.299 Sum_probs=56.1
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhh---hcceeecCCCCChhhHHHHH---HhcCCCCCccCCccchhHHHHHHHHH
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLG---ICGLMVPAESASIPYFDAIM---LHMKSYDSPADGKSSFQVEMSEIRSI 824 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la---~~G~~vpa~~~~i~~~d~i~---~~~~~~d~~~~~~stfs~e~~~~~~i 824 (1051)
|++++++||||+||||+++.|++...+. ..+.++..+...++.++++. ..+|..-..... ...+...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~-------~~dl~~a 263 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKD-------IADLQLM 263 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCC-------HHHHHHH
Confidence 7899999999999999999999965432 23446667766666665432 233432211111 1122344
Q ss_pred HHHcCCCcEEEEcCCCCCCCHHH
Q 001570 825 VTATTSRSLVLIDEICRGTETAK 847 (1051)
Q Consensus 825 l~~a~~~sLlLLDEp~~GlD~~~ 847 (1051)
+....+.+++++|.+ |..+.+
T Consensus 264 l~~l~~~d~VLIDTa--Grsqrd 284 (420)
T PRK14721 264 LHELRGKHMVLIDTV--GMSQRD 284 (420)
T ss_pred HHHhcCCCEEEecCC--CCCcch
Confidence 455778899999975 665544
No 466
>PRK04296 thymidine kinase; Provisional
Probab=97.49 E-value=0.0005 Score=72.66 Aligned_cols=114 Identities=19% Similarity=0.054 Sum_probs=61.3
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhhh-cceee-cCCCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHc
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLGI-CGLMV-PAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTAT 828 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la~-~G~~v-pa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a 828 (1051)
|.+.+|+||.|+||||++..++.-...+. ...++ |.-..... ...+..++|..-.. ........-...+.. ..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~-~~~i~~~lg~~~~~-~~~~~~~~~~~~~~~---~~ 76 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYG-EGKVVSRIGLSREA-IPVSSDTDIFELIEE---EG 76 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccccc-CCcEecCCCCcccc-eEeCChHHHHHHHHh---hC
Confidence 67899999999999999877755432221 11122 21011111 12344455432111 001111111111111 24
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChh
Q 001570 829 TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 874 (1051)
Q Consensus 829 ~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~e 874 (1051)
.+.++|++||.-. ++.. .+ ..+++.+++.|.++|++.++.+
T Consensus 77 ~~~dvviIDEaq~-l~~~---~v-~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQF-LDKE---QV-VQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEcccc-CCHH---HH-HHHHHHHHHcCCeEEEEecCcc
Confidence 5679999999932 3332 23 5577777888999999999843
No 467
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.49 E-value=0.00019 Score=94.39 Aligned_cols=73 Identities=8% Similarity=0.004 Sum_probs=56.4
Q ss_pred CccCCccchhHHHHHHHHH-HHHcC----------CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChh
Q 001570 806 SPADGKSSFQVEMSEIRSI-VTATT----------SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 874 (1051)
Q Consensus 806 ~~~~~~stfs~e~~~~~~i-l~~a~----------~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~e 874 (1051)
...+...++|+|++.+..+ ++.+. +|+++||||||+|+|+.....+ ..+++.+...|.+|+|+||+.+
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~-~~~l~~l~~~g~~i~iisH~~~ 1021 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRA-IGILDAIREGSKMIGIISHVPE 1021 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEeCcHH
Confidence 3445678999999875443 33332 7999999999999999776666 5666777778999999999999
Q ss_pred hhhCc
Q 001570 875 IFSLP 879 (1051)
Q Consensus 875 l~~l~ 879 (1051)
+....
T Consensus 1022 ~~~~~ 1026 (1042)
T TIGR00618 1022 FRERI 1026 (1042)
T ss_pred HHHhh
Confidence 87654
No 468
>PRK09183 transposase/IS protein; Provisional
Probab=97.47 E-value=0.00037 Score=77.27 Aligned_cols=101 Identities=18% Similarity=0.230 Sum_probs=56.5
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhhh-cceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHH-HHc
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLGI-CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIV-TAT 828 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la~-~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il-~~a 828 (1051)
|+.++|+||+|+|||+|..+|+....... ...|+.. ..++..+.... .. .. +..++ ...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~--------~~l~~~l~~a~--~~--~~-------~~~~~~~~~ 162 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA--------ADLLLQLSTAQ--RQ--GR-------YKTTLQRGV 162 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH--------HHHHHHHHHHH--HC--Cc-------HHHHHHHHh
Confidence 67899999999999999999976543221 1112221 11221111000 00 00 11222 224
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHHHHHHHHHHcCCcEEEEeccC
Q 001570 829 TSRSLVLIDEICRG-TETAKGTCIAGSIIETLDNIGCLGIVSTHL 872 (1051)
Q Consensus 829 ~~~sLlLLDEp~~G-lD~~~~~~l~~~ile~L~~~g~~vi~~TH~ 872 (1051)
..++++++||.+.. .+. +...+...+++...+.+ .+|++|+.
T Consensus 163 ~~~dlLiiDdlg~~~~~~-~~~~~lf~li~~r~~~~-s~iiTsn~ 205 (259)
T PRK09183 163 MAPRLLIIDEIGYLPFSQ-EEANLFFQVIAKRYEKG-SMILTSNL 205 (259)
T ss_pred cCCCEEEEcccccCCCCh-HHHHHHHHHHHHHHhcC-cEEEecCC
Confidence 67899999999864 555 34444466666655555 46777765
No 469
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.45 E-value=0.00032 Score=80.94 Aligned_cols=111 Identities=19% Similarity=0.239 Sum_probs=58.1
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecC-CCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcC
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPA-ESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 829 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa-~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~ 829 (1051)
+.+++|+||+||||||+|+.+.+.+.....+..+-- ++..+. .+.....+. .........+|... +..++ -.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~-~~~~~~~i~-q~evg~~~~~~~~~---l~~~l--r~ 194 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV-HRNKRSLIN-QREVGLDTLSFANA---LRAAL--RE 194 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh-ccCccceEE-ccccCCCCcCHHHH---HHHhh--cc
Confidence 578999999999999999998775432212222211 111110 000000000 00011111123222 22222 47
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhh
Q 001570 830 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIF 876 (1051)
Q Consensus 830 ~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~ 876 (1051)
+|+++++||+. |+.... ..++ ....|..++.++|-.+-.
T Consensus 195 ~pd~i~vgEir---d~~~~~----~~l~-aa~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 195 DPDVILIGEMR---DLETVE----LALT-AAETGHLVFGTLHTNSAA 233 (343)
T ss_pred CCCEEEEeCCC---CHHHHH----HHHH-HHHcCCcEEEEEcCCCHH
Confidence 99999999996 664432 2233 245699999999965443
No 470
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.41 E-value=0.00011 Score=77.98 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCcchHHHHHHhhH
Q 001570 753 LFLLTGPNGGGKSSLLRSICAAS 775 (1051)
Q Consensus 753 i~~ItGpNGsGKSTLLk~I~gl~ 775 (1051)
+++|+||+||||||+++.|.++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999985
No 471
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.37 E-value=0.00056 Score=92.03 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=56.2
Q ss_pred CCccCCccchhHHHHHH-------HHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH----cCCcEEEEeccCh
Q 001570 805 DSPADGKSSFQVEMSEI-------RSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLD----NIGCLGIVSTHLH 873 (1051)
Q Consensus 805 d~~~~~~stfs~e~~~~-------~~il~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~----~~g~~vi~~TH~~ 873 (1051)
+......+.+|+|++++ +.+.+.+.+|.++||||||+|+|+.....+...+.+.+. ..|.++|++||++
T Consensus 1191 ~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~ 1270 (1311)
T TIGR00606 1191 DTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE 1270 (1311)
T ss_pred CeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH
Confidence 33334446899999973 334455889999999999999999888888666665543 2478999999999
Q ss_pred hhhhC
Q 001570 874 GIFSL 878 (1051)
Q Consensus 874 el~~l 878 (1051)
+++..
T Consensus 1271 ~~~~~ 1275 (1311)
T TIGR00606 1271 DFVEL 1275 (1311)
T ss_pred HHHHH
Confidence 98764
No 472
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.34 E-value=0.0035 Score=80.30 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=40.5
Q ss_pred cCCCcEEEEcCCCCCC-CHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh
Q 001570 828 TTSRSLVLIDEICRGT-ETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 828 a~~~sLlLLDEp~~Gl-D~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
..+|.++++|||..++ |+.....+ ..+++.+++.|.+++++||+++.+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i-~~~lk~~RK~~~~vil~Tq~~~d~~ 699 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKI-REWLKVLRKANCAVVLATQSISDAE 699 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHh
Confidence 5789999999999999 67655555 6777777778999999999988764
No 473
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.34 E-value=0.00021 Score=75.15 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHH
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASL 776 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~ 776 (1051)
|+.++|+|||||||||+++++++++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 67899999999999999999998754
No 474
>PRK03918 chromosome segregation protein; Provisional
Probab=97.33 E-value=0.00039 Score=90.19 Aligned_cols=72 Identities=7% Similarity=-0.088 Sum_probs=53.7
Q ss_pred CCccchhHHHHHHHHH-------HHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhCccc
Q 001570 809 DGKSSFQVEMSEIRSI-------VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSLPLK 881 (1051)
Q Consensus 809 ~~~stfs~e~~~~~~i-------l~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l~~~ 881 (1051)
....++|+|+++...+ ...+.+|+++||||||+|+|+.....+...+. .+...+.++|++||+.++...++.
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~-~~~~~~~~iiiith~~~~~~~~d~ 862 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIME-RYLRKIPQVIIVSHDEELKDAADY 862 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHH-HHHhcCCEEEEEECCHHHHHhCCe
Confidence 3456788998874322 12367899999999999999988888855544 455557899999999988765543
No 475
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.33 E-value=0.0002 Score=61.24 Aligned_cols=25 Identities=48% Similarity=0.745 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhH
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAAS 775 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~ 775 (1051)
|.+++|+|||||||||+|.+|.-++
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999997654
No 476
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.27 E-value=0.00046 Score=90.65 Aligned_cols=70 Identities=13% Similarity=0.071 Sum_probs=56.5
Q ss_pred cCCccchhHHHHHHHHH-HHHc--------CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhhC
Q 001570 808 ADGKSSFQVEMSEIRSI-VTAT--------TSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 808 ~~~~stfs~e~~~~~~i-l~~a--------~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~l 878 (1051)
.+...++|+|++++..+ ++.+ .+|+++||||||+|+|+.....+ +.+++.+++.|.+|+|+||..++.+.
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~-~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTA-LDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHH-HHHHHHHHHCCCEEEEEecHHHHHHh
Confidence 35678999999986554 4443 27999999999999999777776 66778888889999999998888654
No 477
>PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the connector domain (domain 2) found in proteins of the MutS family. The structure of the MutS connector domain consists of a parallel beta-sheet surrounded by four alpha helices, which is similar to the structure of the Holliday junction resolvase ruvC.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 2WTU_A ....
Probab=97.25 E-value=0.00031 Score=69.36 Aligned_cols=53 Identities=8% Similarity=0.085 Sum_probs=39.6
Q ss_pred cEEEEEc--CCceEEEEEeccccceeeeecCCCHHHHHHHHHcCCcceEEEcCCc
Q 001570 250 PVIGVSR--SAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSL 302 (1051)
Q Consensus 250 ~~~gi~~--~~~~~~~~s~~~~~~~~~v~~~~t~~~l~~~L~~~~p~Eill~~~~ 302 (1051)
|+++|+. .++.|+.+.++.++|+|.++++.+.+.|.++|.+++|+||+++++.
T Consensus 2 yl~aI~~~~~~~~~gla~~D~sTGe~~~~~~~d~~~L~~~L~~~~P~EIi~~~~~ 56 (137)
T PF05188_consen 2 YLAAIYEKNDEDSYGLAYIDLSTGEFYVTEFEDYSELKSELARLSPREIIIPEGF 56 (137)
T ss_dssp EEEEEEEETCSSEEEEEEEETTTTEEEEEEEECHHHHHHHHHHH-ESEEEEETTC
T ss_pred EEEEEEEecCCCEEEEEEEECCCCEEEEEEeCCHHHHHHHHHhcCCeEEEEcCCC
Confidence 3455555 5555666666666666669998778899999999999999999886
No 478
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.24 E-value=0.0035 Score=67.88 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=65.0
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhH-HhhhcceeecCCCCChhhHHHHHHhcCC-------------CCCccC------C
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAAS-LLGICGLMVPAESASIPYFDAIMLHMKS-------------YDSPAD------G 810 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~-~la~~G~~vpa~~~~i~~~d~i~~~~~~-------------~d~~~~------~ 810 (1051)
|++++|.||+|+|||||...++.-. .....+.|+..+...-... .....++. .|.... .
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~-~~~~~~g~~~~~~~~~~~l~i~d~~~~~~~~~~~ 98 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESII-RQAAQFGMDFEKAIEEGKLVIIDALMKEKEDEWS 98 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHH-HHHHHhCCCHHHHhhcCCEEEEEccccccccccc
Confidence 7899999999999999999876322 2223334554332111111 01111111 111000 0
Q ss_pred ccchhH-HH-HHHHHHHHHc-CCCcEEEEcCCCCCC--CHHHHHHHHHHHHHHHHcCCcEEEEeccChh
Q 001570 811 KSSFQV-EM-SEIRSIVTAT-TSRSLVLIDEICRGT--ETAKGTCIAGSIIETLDNIGCLGIVSTHLHG 874 (1051)
Q Consensus 811 ~stfs~-e~-~~~~~il~~a-~~~sLlLLDEp~~Gl--D~~~~~~l~~~ile~L~~~g~~vi~~TH~~e 874 (1051)
...+.. ++ .++..+.... .+++++++|-++.-+ +|.....+...+...+++.|+|+|+++|...
T Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~ 167 (229)
T TIGR03881 99 LRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAI 167 (229)
T ss_pred cccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccc
Confidence 001111 11 1223333332 257788888876542 4433445556777777888999999999644
No 479
>PRK06893 DNA replication initiation factor; Validated
Probab=97.24 E-value=0.0011 Score=72.10 Aligned_cols=93 Identities=17% Similarity=0.292 Sum_probs=57.4
Q ss_pred eEEEEEcCCCCCcchHHHHHHhhHHhhh-cceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcCC
Q 001570 752 SLFLLTGPNGGGKSSLLRSICAASLLGI-CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 830 (1051)
Q Consensus 752 ~i~~ItGpNGsGKSTLLk~I~gl~~la~-~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~ 830 (1051)
..+.|.||.|+|||+|++.|+.-..-.. ...|++.... + .+. ..++....+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~-----~-----------------~~~------~~~~~~~~~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS-----Q-----------------YFS------PAVLENLEQ 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh-----h-----------------hhh------HHHHhhccc
Confidence 4579999999999999999987643221 1123222100 0 000 122334567
Q ss_pred CcEEEEcCCCCCC-CHHHHHHHHHHHHHHHHcCCcEEEEeccCh
Q 001570 831 RSLVLIDEICRGT-ETAKGTCIAGSIIETLDNIGCLGIVSTHLH 873 (1051)
Q Consensus 831 ~sLlLLDEp~~Gl-D~~~~~~l~~~ile~L~~~g~~vi~~TH~~ 873 (1051)
.++|++||+.... +......+ ..+++.+.+.|.++|++|++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l-~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAI-FDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHH-HHHHHHHHHcCCcEEEEeCCC
Confidence 8999999998765 44333344 667777777777776666654
No 480
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0045 Score=71.65 Aligned_cols=89 Identities=13% Similarity=0.105 Sum_probs=50.1
Q ss_pred eEEEEEcCCCCCcchHHHHHHhhHHhh-hcceeecCCCCChhhHHHHHH---hcCCCCCccCCccchhHHHHHHHHHHHH
Q 001570 752 SLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIML---HMKSYDSPADGKSSFQVEMSEIRSIVTA 827 (1051)
Q Consensus 752 ~i~~ItGpNGsGKSTLLk~I~gl~~la-~~G~~vpa~~~~i~~~d~i~~---~~~~~d~~~~~~stfs~e~~~~~~il~~ 827 (1051)
.+++|+||||+||||++..|++.+... ....++-++...+..++++-. .++..-.... -...+.+....+..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~----d~~~L~~aL~~lk~ 317 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR----DEAAMTRALTYFKE 317 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC----CHHHHHHHHHHHHh
Confidence 578999999999999999999865321 112355566555555555443 2232111011 11222221111222
Q ss_pred cCCCcEEEEcCCCCCCC
Q 001570 828 TTSRSLVLIDEICRGTE 844 (1051)
Q Consensus 828 a~~~sLlLLDEp~~GlD 844 (1051)
..+.++||+|-|++.-.
T Consensus 318 ~~~~DvVLIDTaGRs~k 334 (436)
T PRK11889 318 EARVDYILIDTAGKNYR 334 (436)
T ss_pred ccCCCEEEEeCccccCc
Confidence 23579999998888553
No 481
>PRK01156 chromosome segregation protein; Provisional
Probab=97.24 E-value=0.0007 Score=87.99 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=54.9
Q ss_pred CCccchhHHHHHHHHH-------HHHcCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCC--cEEEEeccChhhhhCc
Q 001570 809 DGKSSFQVEMSEIRSI-------VTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIG--CLGIVSTHLHGIFSLP 879 (1051)
Q Consensus 809 ~~~stfs~e~~~~~~i-------l~~a~~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g--~~vi~~TH~~el~~l~ 879 (1051)
.+...+|+|+++...+ ...+.+|++++|||||+|+|+.....+...+...+...+ .++|++||++++...+
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 3566789999875432 233678999999999999999888877555544455443 4899999999988765
Q ss_pred ccc
Q 001570 880 LKI 882 (1051)
Q Consensus 880 ~~~ 882 (1051)
+.+
T Consensus 877 d~i 879 (895)
T PRK01156 877 DVA 879 (895)
T ss_pred CeE
Confidence 543
No 482
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.23 E-value=0.00053 Score=84.38 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=51.3
Q ss_pred CccchhHHHHHHHHHH-HHc----------CCCcEEEEcCCC-CCCCHHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh
Q 001570 810 GKSSFQVEMSEIRSIV-TAT----------TSRSLVLIDEIC-RGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 810 ~~stfs~e~~~~~~il-~~a----------~~~sLlLLDEp~-~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
...++|+|+++...+. +.+ .+|+++|||||+ +++|+.....+.. ++..+ .|.++|++||+.++..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~-~l~~~--~~~~iiiish~~~~~~ 541 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLS-ILDSL--KDTNVFVISHKDHDPQ 541 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHH-HHHhC--CCCeEEEEECchhchh
Confidence 4578899998855443 222 589999999998 7899988777744 55555 4789999999987766
Q ss_pred Cccc
Q 001570 878 LPLK 881 (1051)
Q Consensus 878 l~~~ 881 (1051)
.++.
T Consensus 542 ~~d~ 545 (562)
T PHA02562 542 KFDR 545 (562)
T ss_pred hhhc
Confidence 5443
No 483
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.15 E-value=0.0031 Score=73.47 Aligned_cols=117 Identities=17% Similarity=0.120 Sum_probs=67.9
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhh-hcceeecCCCCChhhHHHHHHhcCCCC-CccCCccchhHHHHHHHHHHHHc
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIMLHMKSYD-SPADGKSSFQVEMSEIRSIVTAT 828 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la-~~G~~vpa~~~~i~~~d~i~~~~~~~d-~~~~~~stfs~e~~~~~~il~~a 828 (1051)
|+++.|.|++|+|||||+.+++...... ....|+..+.. ...+..-..+++... ++.....+ .+.++...+. .
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rlg~~~~~l~l~~e~---~le~I~~~i~-~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRLGISTENLYLLAET---NLEDILASIE-E 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHcCCCcccEEEEccC---cHHHHHHHHH-h
Confidence 6899999999999999999998765332 22345544322 222222334555432 11100011 1223333332 3
Q ss_pred CCCcEEEEcCCCC----CCC-----HHHHHHHHHHHHHHHHcCCcEEEEeccC
Q 001570 829 TSRSLVLIDEICR----GTE-----TAKGTCIAGSIIETLDNIGCLGIVSTHL 872 (1051)
Q Consensus 829 ~~~sLlLLDEp~~----GlD-----~~~~~~l~~~ile~L~~~g~~vi~~TH~ 872 (1051)
.+|++|++|+... .+| ...-..++..+.+..++.++++|++.|-
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghv 209 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHV 209 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 5899999999743 222 1222344456677777889999999884
No 484
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.08 E-value=0.0031 Score=69.85 Aligned_cols=122 Identities=15% Similarity=0.119 Sum_probs=57.7
Q ss_pred eEEEEEcCCCCCcchHHHHHHhhHHhhhcc--eeecCCCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcC
Q 001570 752 SLFLLTGPNGGGKSSLLRSICAASLLGICG--LMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 829 (1051)
Q Consensus 752 ~i~~ItGpNGsGKSTLLk~I~gl~~la~~G--~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~ 829 (1051)
.+++|+||||+||||+++.++......... ..++........+..+...+|....- .........+.+.........
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999997654311110 01111111112334455556653211 111111112222111122345
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCc-EEEEeccChhhh
Q 001570 830 SRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGC-LGIVSTHLHGIF 876 (1051)
Q Consensus 830 ~~sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~-~vi~~TH~~el~ 876 (1051)
.+-++++||.= .+++.....+ ..+.+.....+. ..|+.|...++.
T Consensus 123 ~~~vliiDe~~-~l~~~~~~~l-~~l~~~~~~~~~~~~vvl~g~~~~~ 168 (269)
T TIGR03015 123 KRALLVVDEAQ-NLTPELLEEL-RMLSNFQTDNAKLLQIFLVGQPEFR 168 (269)
T ss_pred CCeEEEEECcc-cCCHHHHHHH-HHHhCcccCCCCeEEEEEcCCHHHH
Confidence 67799999944 4665433322 233322111222 234566655554
No 485
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.0014 Score=76.05 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=52.8
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhhh---cceeecCCCCChhhHHHH---HHhcCCCCCccCCccchhHHHHHHHHH
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLGI---CGLMVPAESASIPYFDAI---MLHMKSYDSPADGKSSFQVEMSEIRSI 824 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la~---~G~~vpa~~~~i~~~d~i---~~~~~~~d~~~~~~stfs~e~~~~~~i 824 (1051)
|.+++++||||+||||++..++......+ ...++..+...++-.+++ ...++..-........ +...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~-------l~~~ 209 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD-------LQLA 209 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCccc-------HHHH
Confidence 67899999999999999999998764332 223555555444444433 2334432211121122 2234
Q ss_pred HHHcCCCcEEEEcCCCCC
Q 001570 825 VTATTSRSLVLIDEICRG 842 (1051)
Q Consensus 825 l~~a~~~sLlLLDEp~~G 842 (1051)
+....+.++||+|+++..
T Consensus 210 l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 210 LAELRNKHMVLIDTIGMS 227 (374)
T ss_pred HHHhcCCCEEEEcCCCCC
Confidence 445678899999999765
No 486
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.07 E-value=0.0036 Score=67.98 Aligned_cols=126 Identities=14% Similarity=0.165 Sum_probs=67.0
Q ss_pred EeeceEEEEEcCCCCCcchHHHHHHhhHHhh-------hcceeecCCCC-ChhhHHHHHHhcCCCC-----CccC-Ccc-
Q 001570 748 VDMQSLFLLTGPNGGGKSSLLRSICAASLLG-------ICGLMVPAESA-SIPYFDAIMLHMKSYD-----SPAD-GKS- 812 (1051)
Q Consensus 748 islg~i~~ItGpNGsGKSTLLk~I~gl~~la-------~~G~~vpa~~~-~i~~~d~i~~~~~~~d-----~~~~-~~s- 812 (1051)
+.-|+++.|+||+|+||||++.+++...... ....|+-.+.. ....+.++...++... .+.. ...
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCC
Confidence 3447899999999999999999998664332 22234444332 2223334444333211 1100 000
Q ss_pred --chhHHHHHHHHHHHHcCCCcEEEEcCCCCCC----C----HHHHHHHHHHHHHHH----HcCCcEEEEeccCh
Q 001570 813 --SFQVEMSEIRSIVTATTSRSLVLIDEICRGT----E----TAKGTCIAGSIIETL----DNIGCLGIVSTHLH 873 (1051)
Q Consensus 813 --tfs~e~~~~~~il~~a~~~sLlLLDEp~~Gl----D----~~~~~~l~~~ile~L----~~~g~~vi~~TH~~ 873 (1051)
.+..-+.++...+....++.+|++|-.++=. + ...+......++..| ++.++++|+++|-.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~ 170 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVT 170 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEe
Confidence 1111122233333333488999999997521 1 123333334444444 46799999888743
No 487
>PRK06921 hypothetical protein; Provisional
Probab=97.07 E-value=0.0033 Score=70.04 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=59.3
Q ss_pred EEEEEcCCCCCcchHHHHHHhhHHhh--hcceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcCC
Q 001570 753 LFLLTGPNGGGKSSLLRSICAASLLG--ICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 830 (1051)
Q Consensus 753 i~~ItGpNGsGKSTLLk~I~gl~~la--~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~ 830 (1051)
-+.+.||.|+|||.|+.+|+.-+.-. ....|++.. .++..+.. .| ......+....+
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~--------~l~~~l~~---------~~----~~~~~~~~~~~~ 177 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFV--------EGFGDLKD---------DF----DLLEAKLNRMKK 177 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHH--------HHHHHHHH---------HH----HHHHHHHHHhcC
Confidence 47899999999999999998865432 223344421 12221100 01 112233455678
Q ss_pred CcEEEEcCCCC---CCC--HHHHHHHHHHHHHHHHcCCcEEEEeccC
Q 001570 831 RSLVLIDEICR---GTE--TAKGTCIAGSIIETLDNIGCLGIVSTHL 872 (1051)
Q Consensus 831 ~sLlLLDEp~~---GlD--~~~~~~l~~~ile~L~~~g~~vi~~TH~ 872 (1051)
.+|||||+... |.. ..........+++.....+..+|++|+.
T Consensus 178 ~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 178 VEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999999954 432 1222333366777666666777888885
No 488
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.06 E-value=0.0031 Score=75.35 Aligned_cols=120 Identities=17% Similarity=0.159 Sum_probs=68.4
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhh-hcceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcC
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 829 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la-~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~ 829 (1051)
|+++.|.|++|+|||||+.+++...... .-..|+-.+.. ...+..-..+++....-..-... ..+.++...+. ..
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs-~~qi~~ra~rlg~~~~~l~~~~e--~~~~~I~~~i~-~~ 169 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES-LQQIKMRAIRLGLPEPNLYVLSE--TNWEQICANIE-EE 169 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC-HHHHHHHHHHcCCChHHeEEcCC--CCHHHHHHHHH-hc
Confidence 7899999999999999999997754322 22345544432 22222222344432110000001 11233333332 35
Q ss_pred CCcEEEEcCCCCCCC---------HHHHHHHHHHHHHHHHcCCcEEEEeccChh
Q 001570 830 SRSLVLIDEICRGTE---------TAKGTCIAGSIIETLDNIGCLGIVSTHLHG 874 (1051)
Q Consensus 830 ~~sLlLLDEp~~GlD---------~~~~~~l~~~ile~L~~~g~~vi~~TH~~e 874 (1051)
+|+++++|....=.. ......++..+.+..++.|.|+|+++|...
T Consensus 170 ~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtk 223 (454)
T TIGR00416 170 NPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTK 223 (454)
T ss_pred CCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 799999998764221 222334445677777788999999999643
No 489
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.03 E-value=0.0011 Score=64.50 Aligned_cols=101 Identities=22% Similarity=0.288 Sum_probs=56.3
Q ss_pred EEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHH--cC-C
Q 001570 754 FLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTA--TT-S 830 (1051)
Q Consensus 754 ~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~--a~-~ 830 (1051)
++|.||.|+||||+.+.++... +..+- .+.. ..+.. . ......+.+..++.. .. .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~~~~----~i~~-~~~~~---------~---~~~~~~~~i~~~~~~~~~~~~ 58 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GFPFI----EIDG-SELIS---------S---YAGDSEQKIRDFFKKAKKSAK 58 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TSEEE----EEET-THHHT---------S---STTHHHHHHHHHHHHHHHTST
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----ccccc----cccc-ccccc---------c---ccccccccccccccccccccc
Confidence 5799999999999999998763 21100 0000 00110 0 112222223333322 23 4
Q ss_pred CcEEEEcCCCCCCCHH------HHHHHHHHHHHHHHcC-----CcEEEEeccChhhh
Q 001570 831 RSLVLIDEICRGTETA------KGTCIAGSIIETLDNI-----GCLGIVSTHLHGIF 876 (1051)
Q Consensus 831 ~sLlLLDEp~~GlD~~------~~~~l~~~ile~L~~~-----g~~vi~~TH~~el~ 876 (1051)
|.++++||.-.-.... ....+...++..+.+. +..+|++|++.+..
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i 115 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKI 115 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGS
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhC
Confidence 8999999975544332 3444556666666542 36888899886543
No 490
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.01 E-value=0.0015 Score=77.93 Aligned_cols=85 Identities=19% Similarity=0.280 Sum_probs=52.7
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhhh---cceeecCCCCChhhHHHHH---HhcCCCCCccCCccchhHHHHHHHHH
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLGI---CGLMVPAESASIPYFDAIM---LHMKSYDSPADGKSSFQVEMSEIRSI 824 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la~---~G~~vpa~~~~i~~~d~i~---~~~~~~d~~~~~~stfs~e~~~~~~i 824 (1051)
|.+++++||||+||||++..|++.....+ ...+++++...+.-.+++- ..+|..-...... .+....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~-------~Dl~~a 328 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDA-------ADLRLA 328 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCc-------hhHHHH
Confidence 57899999999999999999999875442 2246777776665554433 2333211111111 112223
Q ss_pred HHHcCCCcEEEEcCCCCC
Q 001570 825 VTATTSRSLVLIDEICRG 842 (1051)
Q Consensus 825 l~~a~~~sLlLLDEp~~G 842 (1051)
+..+.+.+++++|.++.+
T Consensus 329 L~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 329 LSELRNKHIVLIDTIGMS 346 (484)
T ss_pred HHhccCCCeEEeCCCCcC
Confidence 344567789999997654
No 491
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.01 E-value=0.014 Score=65.02 Aligned_cols=96 Identities=14% Similarity=0.111 Sum_probs=53.8
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHh-hhcceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcC
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLL-GICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATT 829 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~l-a~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~ 829 (1051)
++.++++||||+||||+++.+++.... .....++-.+...+..+.++-......+...... .-...+.+...-++...
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcC
Confidence 478999999999999999999887532 1223355555555555555443322111110000 00112222111122334
Q ss_pred CCcEEEEcCCCCCC-CHHH
Q 001570 830 SRSLVLIDEICRGT-ETAK 847 (1051)
Q Consensus 830 ~~sLlLLDEp~~Gl-D~~~ 847 (1051)
+.+++|+|-|++.- |...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~ 172 (270)
T PRK06731 154 RVDYILIDTAGKNYRASET 172 (270)
T ss_pred CCCEEEEECCCCCcCCHHH
Confidence 68999999999874 4433
No 492
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.00 E-value=0.0097 Score=69.57 Aligned_cols=86 Identities=21% Similarity=0.305 Sum_probs=52.6
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhh-----hcceeecCCCCChhhHHHHH---HhcCCCCCccCCccchhHHHHHHH
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLG-----ICGLMVPAESASIPYFDAIM---LHMKSYDSPADGKSSFQVEMSEIR 822 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la-----~~G~~vpa~~~~i~~~d~i~---~~~~~~d~~~~~~stfs~e~~~~~ 822 (1051)
+.+++++||||+||||.+.-++..+... ....++-.+.....-.+++- ..++.. +. .... ...+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp--v~-~~~~----~~~l~ 246 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP--VK-AIES----FKDLK 246 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc--eE-eeCc----HHHHH
Confidence 4689999999999999999998765433 12234555554444444322 223331 11 1111 12344
Q ss_pred HHHHHcCCCcEEEEcCCCCCC
Q 001570 823 SIVTATTSRSLVLIDEICRGT 843 (1051)
Q Consensus 823 ~il~~a~~~sLlLLDEp~~Gl 843 (1051)
..+....+.++||+|++++.-
T Consensus 247 ~~L~~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 247 EEITQSKDFDLVLVDTIGKSP 267 (388)
T ss_pred HHHHHhCCCCEEEEcCCCCCc
Confidence 445556788999999999875
No 493
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=96.99 E-value=0.0059 Score=78.33 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=39.9
Q ss_pred cCCCcEEEEcCCCCCCC-HHHHHHHHHHHHHHHHcCCcEEEEeccChhhhh
Q 001570 828 TTSRSLVLIDEICRGTE-TAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 828 a~~~sLlLLDEp~~GlD-~~~~~~l~~~ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
...|.++++|||..++| +.....+ ..+++.+++.|..++++||+++.+.
T Consensus 640 ~g~p~il~iDE~w~~L~~~~~~~~i-~~~lk~~RK~~~~~i~~TQ~~~d~~ 689 (800)
T PRK13898 640 DGTPSMIVLDEAWALIDNPVFAPKI-KDWLKVLRKLNTFVIFATQSVEDAS 689 (800)
T ss_pred cCCCcEEEEeCChhhCCCHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 46899999999999999 6544444 7777777788999999999987754
No 494
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.0024 Score=79.60 Aligned_cols=89 Identities=18% Similarity=0.261 Sum_probs=57.4
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhhh---cceeecCCCCChhhHHHHH---HhcCCCCCccCCccchhHHHHHHHHH
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLGI---CGLMVPAESASIPYFDAIM---LHMKSYDSPADGKSSFQVEMSEIRSI 824 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la~---~G~~vpa~~~~i~~~d~i~---~~~~~~d~~~~~~stfs~e~~~~~~i 824 (1051)
|++++++||||+||||++..|++.....+ ...++..+...++..+++. ..++..-.... ....+...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~-------~~~~l~~a 257 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK-------DAADLRFA 257 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC-------CHHHHHHH
Confidence 68999999999999999999999864332 2246677766665555433 33443221111 12234555
Q ss_pred HHHcCCCcEEEEcCCCCC-CCHH
Q 001570 825 VTATTSRSLVLIDEICRG-TETA 846 (1051)
Q Consensus 825 l~~a~~~sLlLLDEp~~G-lD~~ 846 (1051)
+..+.+.++||+|=+++. .|..
T Consensus 258 l~~~~~~D~VLIDTAGRs~~d~~ 280 (767)
T PRK14723 258 LAALGDKHLVLIDTVGMSQRDRN 280 (767)
T ss_pred HHHhcCCCEEEEeCCCCCccCHH
Confidence 556677899999988754 4543
No 495
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.97 E-value=0.0032 Score=69.11 Aligned_cols=103 Identities=25% Similarity=0.343 Sum_probs=62.8
Q ss_pred EEEEEcCCCCCcchHHHHHHhhHHhh-hcceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcCCC
Q 001570 753 LFLLTGPNGGGKSSLLRSICAASLLG-ICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 831 (1051)
Q Consensus 753 i~~ItGpNGsGKSTLLk~I~gl~~la-~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~~ 831 (1051)
.+.+.|+.|+|||+|+..|+-.+... ....++. +..++..+.. +|...-.....++....+.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it--------~~~l~~~l~~---------~~~~~~~~~~~~l~~l~~~ 163 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT--------VADIMSAMKD---------TFSNSETSEEQLLNDLSNV 163 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE--------HHHHHHHHHH---------HHhhccccHHHHHHHhccC
Confidence 58999999999999999998764321 1111221 1223322211 0100000112344446689
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccC
Q 001570 832 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 872 (1051)
Q Consensus 832 sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~ 872 (1051)
++|++||++.--+......+...|+++-.+....+|++|-.
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 99999999987666666677788888765555667777764
No 496
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.96 E-value=0.0015 Score=63.78 Aligned_cols=111 Identities=14% Similarity=0.188 Sum_probs=58.3
Q ss_pred eEEEEEcCCCCCcchHHHHHHhhHHhh-----hcc-eee--cCCCCChhhHHHHHHhcCCCCCccCCccchhHHH-HHHH
Q 001570 752 SLFLLTGPNGGGKSSLLRSICAASLLG-----ICG-LMV--PAESASIPYFDAIMLHMKSYDSPADGKSSFQVEM-SEIR 822 (1051)
Q Consensus 752 ~i~~ItGpNGsGKSTLLk~I~gl~~la-----~~G-~~v--pa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~-~~~~ 822 (1051)
.++.|+||.|+||||+++.++.-.... +.. .++ |.....-.++..+...++..... .....++ ..+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~l~~~~~ 80 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQTSDELRSLLI 80 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-HHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cCCHHHHHHHHH
Confidence 578999999999999999998876431 111 122 22222234456677766654332 1112222 2233
Q ss_pred HHHHHcCCCcEEEEcCCCCCC-CHHHHHHHHHHHHHHHHcCCcEEEEeccC
Q 001570 823 SIVTATTSRSLVLIDEICRGT-ETAKGTCIAGSIIETLDNIGCLGIVSTHL 872 (1051)
Q Consensus 823 ~il~~a~~~sLlLLDEp~~Gl-D~~~~~~l~~~ile~L~~~g~~vi~~TH~ 872 (1051)
..+... ...+|++||.=. + + ......+.....+.+..+|++.+.
T Consensus 81 ~~l~~~-~~~~lviDe~~~-l~~----~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRR-RVVLLVIDEADH-LFS----DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHC-TEEEEEEETTHH-HHT----HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHhc-CCeEEEEeChHh-cCC----HHHHHHHHHHHhCCCCeEEEEECh
Confidence 333332 227999999865 4 3 233233333223456777777665
No 497
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.96 E-value=0.0015 Score=71.87 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=36.2
Q ss_pred HHHHHHHHH-cCCCcEEEEcCCCCCCCHHHHHH-HHHHHHHHHHcCCcEEEEeccChhhhh
Q 001570 819 SEIRSIVTA-TTSRSLVLIDEICRGTETAKGTC-IAGSIIETLDNIGCLGIVSTHLHGIFS 877 (1051)
Q Consensus 819 ~~~~~il~~-a~~~sLlLLDEp~~GlD~~~~~~-l~~~ile~L~~~g~~vi~~TH~~el~~ 877 (1051)
.|+..+... ..++++.+| +|..+|+.+-.. + +++.+...+.+.|+.||......
T Consensus 143 ~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~---i~~~~~~~~~~~ivls~~la~~~ 198 (249)
T cd01128 143 KRFFGAARNIEEGGSLTII--ATALVDTGSRMDDV---IFEEFKGTGNMELVLDRRLAERR 198 (249)
T ss_pred HHHHHHhcCCCCCCceEEe--eeheecCCCcccch---HHHHHhcCCCcEEEEchHHhhCC
Confidence 444443333 368999999 999999644332 3 25667666789999999655433
No 498
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.95 E-value=0.0021 Score=76.61 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=61.2
Q ss_pred EEEEcCCCCCcchHHHHHHhhHHhhh---cceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcCC
Q 001570 754 FLLTGPNGGGKSSLLRSICAASLLGI---CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 830 (1051)
Q Consensus 754 ~~ItGpNGsGKSTLLk~I~gl~~la~---~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~ 830 (1051)
+.|.||.|+|||.|++.|+.-+.-.. ...|++++. ++..+...+... .+.++.... ..+
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~----f~~~~~~~~~~~------------~~~~f~~~~--~~~ 194 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK----FLNDLVDSMKEG------------KLNEFREKY--RKK 194 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH----HHHHHHHHHhcc------------cHHHHHHHH--Hhc
Confidence 78999999999999999987654321 223444321 122232222110 011111111 136
Q ss_pred CcEEEEcCCCCCCCHHHH-HHHHHHHHHHHHcCCcEEEEec-cChhh
Q 001570 831 RSLVLIDEICRGTETAKG-TCIAGSIIETLDNIGCLGIVST-HLHGI 875 (1051)
Q Consensus 831 ~sLlLLDEp~~GlD~~~~-~~l~~~ile~L~~~g~~vi~~T-H~~el 875 (1051)
+++||+||+....+.... ..+ ..+++.+.+.|..+|++| |.+..
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~el-f~~~n~l~~~~k~iIitsd~~p~~ 240 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTEL-FHTFNELHDSGKQIVICSDREPQK 240 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHH-HHHHHHHHHcCCeEEEECCCCHHH
Confidence 899999999988776433 344 556777777777777776 55544
No 499
>PRK06526 transposase; Provisional
Probab=96.95 E-value=0.0038 Score=69.01 Aligned_cols=102 Identities=13% Similarity=0.137 Sum_probs=58.3
Q ss_pred ceEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcCC
Q 001570 751 QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTS 830 (1051)
Q Consensus 751 g~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~ 830 (1051)
++-++|+||.|+|||+|...|+.-+. +.|.- ..+.....++..+.... ...+ ....+....+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~--~~g~~-----v~f~t~~~l~~~l~~~~----~~~~-------~~~~l~~l~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC--QAGHR-----VLFATAAQWVARLAAAH----HAGR-------LQAELVKLGR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH--HCCCc-----hhhhhHHHHHHHHHHHH----hcCc-------HHHHHHHhcc
Confidence 46789999999999999999975433 22321 11122223333332110 0011 1222334567
Q ss_pred CcEEEEcCCCCC-CCHHHHHHHHHHHHHHHHcCCcEEEEeccC
Q 001570 831 RSLVLIDEICRG-TETAKGTCIAGSIIETLDNIGCLGIVSTHL 872 (1051)
Q Consensus 831 ~sLlLLDEp~~G-lD~~~~~~l~~~ile~L~~~g~~vi~~TH~ 872 (1051)
++|||+||++.- .++... .+...+++...+.+ .+|++|+.
T Consensus 160 ~dlLIIDD~g~~~~~~~~~-~~L~~li~~r~~~~-s~IitSn~ 200 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAA-NLFFQLVSSRYERA-SLIVTSNK 200 (254)
T ss_pred CCEEEEcccccCCCCHHHH-HHHHHHHHHHHhcC-CEEEEcCC
Confidence 899999999864 455443 44466666554444 57777775
No 500
>PRK12377 putative replication protein; Provisional
Probab=96.94 E-value=0.0036 Score=68.87 Aligned_cols=104 Identities=20% Similarity=0.217 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCCcchHHHHHHhhHHhhhcceeecCCCCChhhHHHHHHhcCCCCCccCCccchhHHHHHHHHHHHHcCCC
Q 001570 752 SLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSR 831 (1051)
Q Consensus 752 ~i~~ItGpNGsGKSTLLk~I~gl~~la~~G~~vpa~~~~i~~~d~i~~~~~~~d~~~~~~stfs~e~~~~~~il~~a~~~ 831 (1051)
.-+.|.||.|+|||.|+.+|+..+.- .|..| .+-.+..++..+... +..+ .....++..+.+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~--~g~~v-----~~i~~~~l~~~l~~~---------~~~~-~~~~~~l~~l~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA--KGRSV-----IVVTVPDVMSRLHES---------YDNG-QSGEKFLQELCKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH--cCCCe-----EEEEHHHHHHHHHHH---------Hhcc-chHHHHHHHhcCC
Confidence 35799999999999999999886542 22211 111111222222110 0000 0112356667899
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEeccC
Q 001570 832 SLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHL 872 (1051)
Q Consensus 832 sLlLLDEp~~GlD~~~~~~l~~~ile~L~~~g~~vi~~TH~ 872 (1051)
+||+|||.+.--.......+...+++.-.+....+|++|-.
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999999876555556667688888776656677777764
Done!