Query 001570
Match_columns 1051
No_of_seqs 450 out of 4662
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 16:30:03 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001570.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_868-872//hhsearch_pdb/001570hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3thx_B DNA mismatch repair pro 1.0 1 1 943.9 32.6 751 126-942 15-880 (918)
2 1wb9_A DNA mismatch repair pro 1.0 1 1 934.7 44.9 720 126-941 12-798 (800)
3 1ewq_A DNA mismatch repair pro 1.0 1 1 909.5 39.3 702 126-940 15-763 (765)
4 2o8b_B DNA mismatch repair pro 1.0 1 1 887.1 43.0 759 126-942 70-988 (1022)
5 3thx_A DNA mismatch repair pro 1.0 1 1 826.3 40.0 766 126-942 18-854 (934)
6 3fvq_A Fe(3+) IONS import ATP- 1.0 1 1 166.6 15.4 153 740-892 15-219 (359)
7 3rlf_A Maltose/maltodextrin im 1.0 1 1 164.1 14.0 153 740-892 14-214 (381)
8 1z47_A CYSA, putative ABC-tran 1.0 1 1 161.2 14.2 151 740-890 26-224 (355)
9 2yyz_A Sugar ABC transporter, 1.0 1 1 161.1 15.2 151 740-890 14-212 (359)
10 2it1_A 362AA long hypothetical 1.0 1 1 160.6 14.9 151 740-890 14-212 (362)
No 1
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=1.00 E-value=1 Score=943.90 Aligned_cols=751 Identities=17% Similarity=0.171 Sum_probs=561.8
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 36999999886099949999606126548898999999928876899999996400357343788799999889529997
Q 001570 126 TLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIV 205 (1051)
Q Consensus 126 ~~~~~~~~~k~~~p~~vll~r~Gdfye~~~~DA~~~~~~l~l~~~~~~~~~~~~~ag~P~~~~~~~l~~L~~~G~~Vai~ 205 (1051)
.|++|||++|++|||+|||||||||||+||+||++++++|+|++|. .+++||||||+|+++.|+.+||++|||||||
T Consensus 15 Pmm~Qy~~iK~~~~D~lLffr~GdFYElF~eDA~~as~~L~i~lt~---~~~~pmaGvP~ha~~~yl~rLv~~G~kVai~ 91 (918)
T 3thx_B 15 PLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHL---DHNFMTASIPTHRLFVHVRRLVAKGYKVGVV 91 (918)
T ss_dssp HHHHHHHHHHTTTTTSEEEEECSSEEEEEHHHHHHHHHHHTCCCEE---ETTEEEEEEEGGGHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCEEEEEHHHHHHHHHHHCCEEEC---CCCEEEEECCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8999999999878995999984877665075699999972906405---7971277233767899999999769958999
Q ss_pred ECCCCCCCC-----C-CCCEEEEEEEECCCCCCCCCC---------------CCCCCCCCCCCCCCEEEEECCC------
Q ss_conf 235796346-----8-961574655536997443466---------------5678999999986589898288------
Q 001570 206 EEVQGPTQA-----R-SRKSRFISGHAHPGSPYVFGL---------------VGIDHDLDFPEPMPVIGVSRSA------ 258 (1051)
Q Consensus 206 eq~e~p~~a-----k-~~v~R~v~~vvTPGT~~~~~~---------------l~~~~~~~~~~a~~~~gi~~~~------ 258 (1051)
||+|+|+.+ | ++|+|+|+|||||||.+++++ +.+..+ ||++ +|....
T Consensus 92 eQ~E~p~~k~~~~~k~~~v~R~v~rvvTpGT~~d~~~~~~~~~~~~~~~~~~l~~~~~-nyL~-----ai~~~~~~~~~~ 165 (918)
T 3thx_B 92 KQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTST-SYLL-----CISENKENVRDK 165 (918)
T ss_dssp EECSCHHHHTTSTTCSSCCCEEEEEEECTTCCCSTTTCCEEEC--CEEECCCSCTTSC-CCEE-----EEEEEC------
T ss_pred ECCCCHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEE-----EEEECCCCCCCC
T ss_conf 5257766651124567855666889977873116310121123332221124678887-6799-----999645555454
Q ss_pred ----CEEEEEEECCCCCEEEEECCC---CHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCC-CCCCCCCC-CCCCCCC
Q ss_conf ----617999861312403631388---98899999873895439985886557888764455-57787533-5210134
Q 001570 259 ----KGYCIISILETMKTYSLEDGL---TEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGE-YGEGGLLW-GECIARH 329 (1051)
Q Consensus 259 ----~~~~~~s~~~~~~~~~v~e~~---t~~~l~~~L~~~~p~Eill~~~~~~~~~~~~~~~~-~~~~~~l~-~~~~~~~ 329 (1051)
..|+.+.++.++|+|.++++. +.+.+.++|.+++|+||++++++... +.++.. +....... ...+++.
T Consensus 166 ~~~~~~~Gla~~D~sTGef~~~~f~d~~~~~~L~~~L~~~~P~Eil~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 242 (918)
T 3thx_B 166 KKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPSALSEQ---TEALIHRATSVSVQDDRIRVERM 242 (918)
T ss_dssp ---CEEEEEEEEETTTTEEEEEEEEECTTCHHHHHHHHHHCCSEEEEESSCCHH---HHHHHHHHHHSSCSSSCCEEEEE
T ss_pred CCCCCEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHH---HHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 556865999999866773899994484059999999985698699956875557---89999863000014663157854
Q ss_pred CCC-CCCCHHHHHHHH---HH--HHCCCCCCCCCCCCCCCCCCCCCC--E-EECHHHHHC-CCCCCCCCCCCEEE-CCCC
Q ss_conf 654-577457999998---76--631999742122344557762200--4-425775302-49999998632673-5897
Q 001570 330 FEW-FEGDPVIELLLK---VK--ELYGLENEVTFRNVTVSYENRPRP--L-HLGTATQIG-AIPTEGIPCLLKVL-LPSN 398 (1051)
Q Consensus 330 ~~~-f~~~~~~~ll~~---v~--~~~gl~~~~~~~~~~~~~~~~~~~--L-yLd~aTq~e-ll~~~~~~sLl~~~-l~~~ 398 (1051)
+.| |+...+...+.. +. +++|.+....+.... ..+..|++ | || ..||++ .+.+ ++.+..| ....
T Consensus 243 ~~~~f~~~~a~~~l~~~f~~~~l~~~g~~~~~~~~~~~-~~~~~A~gall~Yl-~~~~~~~~l~~---~~~~~~~~~~~~ 317 (918)
T 3thx_B 243 DNIYFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLE-KPVICSLAAIIKYL-KEFNLEKMLSK---PENFKQLSSKME 317 (918)
T ss_dssp CGGGTSHHHHHHHHHHHCC--------------CCCCC-HHHHHHHHHHHHHH-HHTTCGGGGSC---GGGEEESCCTTT
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC-HHHHHHHHHHHHHH-HHHCCCCCCCC---CCCCEEECCCCC
T ss_conf 51115756799999998385642112403454330143-89999999999999-99641123234---433215327788
Q ss_pred CCCCCHHHHHHHHHCCCC------CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH-
Q ss_conf 457879999973306995------3399999999967653214887179999998508889543999999999999861-
Q 001570 399 CSGLPILYVRDLLLNPPA------YEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMY- 471 (1051)
Q Consensus 399 ~t~lg~r~LR~LlL~P~~------~sl~~~I~~~~t~vg~~l~~ipdlrrL~~~L~~p~a~~~dl~~I~~rl~aV~~l~- 471 (1051)
+|.||..|+|||||+++. |||+|.||+|+|+||+ |+|++||.+| ++|...|..||++|++|.
T Consensus 318 ~m~LD~~T~rnLEL~~~~~~~~~~gSLl~~Ld~t~T~mG~--------RlLr~Wl~~P---L~d~~~I~~R~daVe~l~~ 386 (918)
T 3thx_B 318 FMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGR--------RKLKKWVTQP---LLKLREINARLDAVSEVLH 386 (918)
T ss_dssp BCEECHHHHHHTTSSSCTTTCSSTTSHHHHHCCCSSHHHH--------HHHHHHHHSC---BCCHHHHHHHHHHHHHHHS
T ss_pred EEEECHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHH--------HHHHHHHHCC---CCCHHHHHHHHHHHHHHHH
T ss_conf 7998789997437763689998887699998427796899--------9999987582---7899999999999999984
Q ss_pred CCHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHH---HHH----CCH---
Q ss_conf 6937999999604930010150102777655767999979875503698612101678887237---730----202---
Q 001570 472 GNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEF---FED----MES--- 541 (1051)
Q Consensus 472 ~~~~l~~~l~~~l~~~~~~~g~~~dlerl~~~~~~~~~~i~~~i~l~~e~~~~~~~~~~I~~~f---~~~----lds--- 541 (1051)
.+..++..++..|..++ |+||+++++....+.++|++.+ ..++..++..+ ... ..+
T Consensus 387 ~~~~~~~~l~~~L~~i~-------DleRll~ri~~~~~~~~dl~~l-------~~~l~~l~~~l~~~l~~~~~~~~~~lL 452 (918)
T 3thx_B 387 SESSVFGQIENHLRKLP-------DIERGLCSIYHKKCSTQEFFLI-------VKTLYHLKSEFQAIIPAVNSHIQSDLL 452 (918)
T ss_dssp CCCTHHHHHHHTTTTCC-------CHHHHHHHHHTTCCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTCCCHHH
T ss_pred CCCHHHHHHHHHHCCCC-------CHHHHHHHHCCCCCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 79578999999872686-------5778888760376888999999-------999999999999998876520257899
Q ss_pred ---------------HHHHHHHH-----C----C--CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHH
Q ss_conf ---------------12100010-----1----3--31239999999999988620570447864210146789984023
Q 001570 542 ---------------TWKGRVKR-----I----H--IEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEI 595 (1051)
Q Consensus 542 ---------------~~~g~V~~-----~----~--~~e~l~el~~la~~L~~aI~ed~lpl~~re~~~i~~tgg~~~eI 595 (1051)
.+...+.. . . ....+++++...+.+..... .+....... ++++.++++
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~l~~~--~~~i~~~~~ 526 (918)
T 3thx_B 453 RTVILEIPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVID----EIRMHLQEI--RKILKNPSA 526 (918)
T ss_dssp HHHHTHHHHHTGGGHHHHTTSCHHHHHHTCSTTSCSCGGGCHHHHHHHHHHHHHHH----HHHHHHHHH--HHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHH--HHHHCCCCC
T ss_conf 99997555667899999999877664427742000243227779999999999999----999999999--987475664
Q ss_pred HHHHCCCCEEECC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4622033232003--31123433589883121346522234675225435214899999999999999999999999997
Q 001570 596 LYAREHEAVWFKG--KKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRG 673 (1051)
Q Consensus 596 ~y~~~~~~~~l~G--y~iev~i~~~~~~~~~I~~l~~~~~~~g~~v~~e~f~T~eL~ealerl~~ae~~a~e~ileiL~e 673 (1051)
.|+..+ | |+++++ ......+|. .|...++....++|+|+++++.++++..+.+++...+.+.+.+
T Consensus 527 ~~~~~~------g~~y~iev~----~~~~~~vp~---~~~~~~~~~~~~rf~tpel~~~~~~~~~~~e~~~~~e~~~~~~ 593 (918)
T 3thx_B 527 QYVTVS------GQEFMIEIK----NSAVSCIPT---DWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLD 593 (918)
T ss_dssp CCEEET------TEEEEEEEE----TTSGGGSCS---SCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEC------CCEEEEEEC----HHHHHHCCC---EEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 368512------878999973----787701998---4899983477259977899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCC-CCCCCCC--CCCCEEEEEEEE
Q ss_conf 7799999999999999999999999764420023665557434332345641032355-7762124--799536656760
Q 001570 674 LSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGANCLKMNGL-SPYWFDA--AEGSAVHNTVDM 750 (1051)
Q Consensus 674 L~~~L~~~i~~L~~ls~lla~Adal~~~a~~a~~~~~~~P~~~~~~~~~~~~~~~~~~-~p~~~~~--~~~~~v~ndi~l 750 (1051)
+...+..+...+..+...++.+|+++|+|..|...+||+|+++++ ..+.+++. ||+.... .++++|+||++|
T Consensus 594 l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~-----~~i~i~~~rHP~le~~~~~~~~~V~ndvsl 668 (918)
T 3thx_B 594 FLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEE-----RKIVIKNGRHPVIDVLLGEQDQYVPNNTDL 668 (918)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTSSSCBCCEEESS-----CEEEEEEECCHHHHHHTCSCSSSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-----CCEEEEECCCHHHHHHHCCCCCEECCCCCC
T ss_conf 999999889999999999999999999999973489747754688-----847997256521222313689566156623
Q ss_pred ----CEEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf ----3089999079998224998797567731025011478778115999998569899945873430699899999999
Q 001570 751 ----QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVT 826 (1051)
Q Consensus 751 ----g~i~~ItGpNgsGKSTlLk~I~~~~~la~~G~~Vpa~~a~i~~~d~i~~~i~~~d~~~~~~Stf~~em~~i~~il~ 826 (1051)
|++++||||||||||||||+++++.+++|.|+++|+..+.++.++.++.+++..+++..+.|+|++||+++..++.
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~ 748 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIR 748 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 47887089998999876589999998878886247634521112259999998678588999868776589999999998
Q ss_pred HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHCCCCCCC-CCCCEEEEEEE---------
Q ss_conf 76999399981899999979899999999999980-79599996358255407632212-22322489974---------
Q 001570 827 ATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDN-IGCLGIVSTHLHGIFSLPLKIKN-AAYKAMGTEYL--------- 895 (1051)
Q Consensus 827 ~a~~~sLiLlDEp~~Gtd~~~g~~i~~~ile~l~~-~g~~vi~aTH~~el~~l~~~~~~-~~~~~~~~~~~--------- 895 (1051)
.+++|+|+|||||++|||+.++.++++++++++.+ .|+++|++|||++++.++...+. +.|.+|.+...
T Consensus 749 ~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~~~~~~~~~~~~~~ 828 (918)
T 3thx_B 749 KATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPG 828 (918)
T ss_dssp HCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEEEECC---------
T ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCC
T ss_conf 66699789996898899989999999999999998249869999476899999862514467899999971564333444
Q ss_pred -----CCCEEEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf -----89333322653187888089999999599999999999999972534
Q 001570 896 -----DGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACGVN 942 (1051)
Q Consensus 896 -----~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~ii~rA~~l~~~~~~~ 942 (1051)
++++.|+|++.+|.+++|||++||+++|+|+.||+||++++..+|..
T Consensus 829 ~~~~~~~~l~flykl~~G~~~~S~gi~vA~~aGlp~~vi~rA~~~~~~LE~~ 880 (918)
T 3thx_B 829 AAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGL 880 (918)
T ss_dssp --------CCEEEEEEESCCCTTTTHHHHTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 3457888345863562289987489999998296999999999999999999
No 2
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=1.00 E-value=1 Score=934.75 Aligned_cols=720 Identities=21% Similarity=0.262 Sum_probs=541.9
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCC-CC-CCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
Q ss_conf 3699999988609994999960612654889899999992887689-99-999964003573437887999998895299
Q 001570 126 TLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG-GL-RPESIPKAGCPVVNLRQTLDDLTRNGYSVC 203 (1051)
Q Consensus 126 ~~~~~~~~~k~~~p~~vll~r~Gdfye~~~~DA~~~~~~l~l~~~~-~~-~~~~~~~ag~P~~~~~~~l~~L~~~G~~Va 203 (1051)
.|++|||++|++|||||||||||||||+||+||++++++|+|++|+ ++ ..+++||||||+|+++.|+++||++|||||
T Consensus 12 p~~~qy~~ik~~~~d~~lffr~GdFYE~f~~DA~~~a~~l~i~lt~r~~~~~~~~pm~GvP~~~~~~yl~~Lv~~G~kVa 91 (800)
T 1wb9_A 12 PMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQGESVA 91 (800)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEECCSSSCCEEEEEEEGGGHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCEEEEEHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 79999999787589989999769779982666999999719188513567888677168878999999999997798599
Q ss_pred EEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCEEEEECCCCHHH
Q ss_conf 97235796346896157465553699744346656789999999865898982886179998613124036313889889
Q 001570 204 IVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDA 283 (1051)
Q Consensus 204 i~eq~e~p~~ak~~v~R~v~~vvTPGT~~~~~~l~~~~~~~~~~a~~~~gi~~~~~~~~~~s~~~~~~~~~v~e~~t~~~ 283 (1051)
||||+|+|+.+|++|+|+|++|+||||.+++++++++.+ ||++|+ ....+.|+.+.++.++|+|.++++.+.+.
T Consensus 92 i~eQ~e~~~~~k~~v~R~v~~v~TpGT~~~~~~l~~~~~-n~l~ai-----~~~~~~~Gla~~D~stg~~~~~~~~d~~~ 165 (800)
T 1wb9_A 92 ICEQIGDPATSKGPVERKVVRIVTPGTISDEALLQERQD-NLLAAI-----WQDSKGFGYATLDISSGRFRLSEPADRET 165 (800)
T ss_dssp EEEECSCGGGCSSSCCEEEEEEECTTTCCCGGGSCTTSC-CCEEEE-----EECSSCEEEEEECTTTCCEEEECCCSHHH
T ss_pred EEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC-CEEEEE-----EECCCEEEEEEEECCCCEEEEEEECCHHH
T ss_conf 998058831147852488999866972214444567777-389999-----98698899999998777799998168999
Q ss_pred HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHH---HH--HHCCCCCCCCC
Q ss_conf 9999873895439985886557888764455577875335210134654-577457999998---76--63199974212
Q 001570 284 LVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEW-FEGDPVIELLLK---VK--ELYGLENEVTF 357 (1051)
Q Consensus 284 l~~~L~~~~p~Eill~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-f~~~~~~~ll~~---v~--~~~gl~~~~~~ 357 (1051)
+.++|.+++|+||+++.+.... .+. .. ...++..+.| |+...+...+.+ +. +.+|+.+..
T Consensus 166 l~~~l~~~~P~Eil~~~~~~~~-----~l~---~~----~~~~~~~~~~~f~~~~~~~~l~~~~~~~~l~~~~~~~~~-- 231 (800)
T 1wb9_A 166 MAAELQRTNPAELLYAEDFAEM-----SLI---EG----RRGLRRRPLWEFEIDTARQQLNLQFGTRDLVGFGVENAP-- 231 (800)
T ss_dssp HHHHHHHHCCSEEEEETTCCCG-----GGT---TT----CSSEEEECGGGGCHHHHHHHHHHHHTCSCSGGGTCTTCH--
T ss_pred HHHHHHHCCCEEEEECCCCCHH-----HHH---HC----CCCEEECCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCH--
T ss_conf 9999973598399974887768-----885---20----561488661016855799999988483432220435748--
Q ss_pred CCCCCCCCCCCCC--E-EECHHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCC-----CCHHHHHHHHHHH
Q ss_conf 2344557762200--4-425775302499999986326735897457879999973306995-----3399999999967
Q 001570 358 RNVTVSYENRPRP--L-HLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPA-----YEIASTIQAICKL 429 (1051)
Q Consensus 358 ~~~~~~~~~~~~~--L-yLd~aTq~ell~~~~~~sLl~~~l~~~~t~lg~r~LR~LlL~P~~-----~sl~~~I~~~~t~ 429 (1051)
....+++ | || ..||.+.+++ ...+..+....+|.||..++++|+++++. |||++.+|+|+|+
T Consensus 232 ------~~~~a~gall~Yl-~~~~~~~~~~---~~~~~~~~~~~~m~ld~~t~~~LEl~~~~~~~~~gSL~~ll~~t~T~ 301 (800)
T 1wb9_A 232 ------RGLCAAGCLLQYA-KDTQRTTLPH---IRSITMEREQDSIIMDAATRRNLEITQNLAGGAENTLASVLDCTVTP 301 (800)
T ss_dssp ------HHHHHHHHHHHHH-HHHHCSCCTT---CCCCEECCGGGBCEECHHHHHHTTSSSCTTSCSTTSHHHHHCCCSSH
T ss_pred ------HHHHHHHHHHHHH-HHHHHHCCCC---CCCCEEECCCCEEEECHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCH
T ss_conf ------9999999999999-9952320146---35437974477798668999854685247899646599986889697
Q ss_pred HHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHH--
Q ss_conf 653214887179999998508889543999999999999861693799999960493001015010277765576799--
Q 001570 430 MSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLA-- 507 (1051)
Q Consensus 430 vg~~l~~ipdlrrL~~~L~~p~a~~~dl~~I~~rl~aV~~l~~~~~l~~~l~~~l~~~~~~~g~~~dlerl~~~~~~~-- 507 (1051)
||+ |+|++||.+| ++|...|+.||++|.++.+ ++..++..+..++ |++|+++++..+
T Consensus 302 ~G~--------RlL~~wl~~P---l~d~~~I~~R~~~v~~~~~---~~~~l~~~L~~~~-------Dler~l~r~~~~~~ 360 (800)
T 1wb9_A 302 MGS--------RMLKRWLHMP---VRDTRVLLERQQTIGALQD---FTAGLQPVLRQVG-------DLERILARLALRTA 360 (800)
T ss_dssp HHH--------HHHHHHHHSC---BCCHHHHHHHHHHHHHTGG---GHHHHHHHHHTTC-------SHHHHHHHHHHTCC
T ss_pred HHH--------HHHHHHHHCC---CCCHHHHHHHHHHHHHHHH---HHHHHHHHHCCCC-------CHHHHHHHHHCCCC
T ss_conf 999--------9999872588---9999999999999999999---9997788752786-------58999999972998
Q ss_pred -------------------------------------------HHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHCCHHHH
Q ss_conf -------------------------------------------9979875503698612101678887237730202121
Q 001570 508 -------------------------------------------SVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWK 544 (1051)
Q Consensus 508 -------------------------------------------~~~i~~~i~l~~e~~~~~~~~~~I~~~f~~~lds~~~ 544 (1051)
...++..+. +|+|....+++.|++++++++|
T Consensus 361 ~~~dl~~l~~~l~~~~~l~~~l~~~~~~~L~~l~~~l~~~~~l~~~i~~~i~--~~~~~~~~~~~~I~~g~~~eLd---- 434 (800)
T 1wb9_A 361 RPRDLARMRHAFQQLPELRAQLETVDSAPVQALREKMGEFAELRDLLERAII--DTPPVLVRDGGVIASGYNEELD---- 434 (800)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHSCCCHHHHHHHHHHCCCHHHHHHHHHHBC--SSCCSCSTTCCCBCTTSCHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHC--CCCHHHHHCCCEECCCCCHHHH----
T ss_conf 9999999999999999999998736868999999736028999999999867--4754454138846789788999----
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 00010133123999999999998862057044786421014678998402346220332320033112343358988312
Q 001570 545 GRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQ 624 (1051)
Q Consensus 545 g~V~~~~~~e~l~el~~la~~L~~aI~ed~lpl~~re~~~i~~tgg~~~eI~y~~~~~~~~l~Gy~iev~i~~~~~~~~~ 624 (1051)
+++.....+...+. .+..++++ .+++.+.+++|++.+ ||+++++.. ....
T Consensus 435 -------------~lr~~~~~~~~~l~----~~~~~~~~---~~~~~~l~i~~~~~~------gy~i~V~~~----~~~~ 484 (800)
T 1wb9_A 435 -------------EWRALADGATDYLE----RLEVRERE---RTGLDTLKVGFNAVH------GYYIQISRG----QSHL 484 (800)
T ss_dssp -------------HHHHHHHHHHHHHH----HHHHHHHH---HHTCTTCEEEEETTT------EEEEEEEHH----HHTT
T ss_pred -------------HHHHHHHHHHHHHH----HHHHHHHH---HHCCCCEEEEECCCC------EEEEEEECC----CCCC
T ss_conf -------------99999999999999----99999999---839981478764731------399998432----0013
Q ss_pred CC-CCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13-46522234675225435214899999999999999999999999997779999999999999999999999976442
Q 001570 625 IK-QLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVS 703 (1051)
Q Consensus 625 I~-~l~~~~~~~g~~v~~e~f~T~eL~ealerl~~ae~~a~e~ileiL~eL~~~L~~~i~~L~~ls~lla~Adal~~~a~ 703 (1051)
+| .+++.++.+ +.++|+|+++++.++++.++..++...+.+++.++...+..+.+.+..+...++.+|+++|+|.
T Consensus 485 vp~~~i~~~s~~----~~~~f~tp~l~~l~~~i~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~ 560 (800)
T 1wb9_A 485 APINYMRRQTLK----NAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAE 560 (800)
T ss_dssp SCTTCEEEEECS----SEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECC----CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 885127864026----8878847899999999999999999999999999999998889999999999999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCEEEC-CCCCCCCCCCCCCEEEEEEEE---CEEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 00236655574343323456410323-557762124799536656760---30899990799982249987975677310
Q 001570 704 EGRRRKWVFPALKDIELDGANCLKMN-GLSPYWFDAAEGSAVHNTVDM---QSLFLLTGPNGGGKSSLLRSICAASLLGI 779 (1051)
Q Consensus 704 ~a~~~~~~~P~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~v~ndi~l---g~i~~ItGpNgsGKSTlLk~I~~~~~la~ 779 (1051)
.|...+||+|+++++ ..+.++ +.||+.....++.+++||+++ |++++|+||||||||||||+++++.+++|
T Consensus 561 ~a~~~~~~~P~~~~~-----~~i~i~~~rHP~le~~~~~~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q 635 (800)
T 1wb9_A 561 RAYTLNYTCPTFIDK-----PGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAY 635 (800)
T ss_dssp HHHHTTCBCCEECSS-----SCEEEEEECCTTHHHHCSSCCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCEECCC-----CCEEEEECCCCEEECCCCCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 998689836477799-----878999541637872479836510231267885899999999876899999998898875
Q ss_pred CCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 25011478778115999998569899945873430699899999999769993999818999999798999999999999
Q 001570 780 CGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETL 859 (1051)
Q Consensus 780 ~G~~Vpa~~a~i~~~d~i~~~i~~~d~~~~~~Stf~~em~~i~~il~~a~~~sLiLlDEp~~Gtd~~~g~~i~~~ile~l 859 (1051)
.|++||+..+.++.+++++.+++..+++..+.|+|+.+|.++..++..+++|+|+|+||||+|||+.++.++++++++++
T Consensus 636 ~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l 715 (800)
T 1wb9_A 636 IGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENL 715 (800)
T ss_dssp TTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHCCCCEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 18642132045421999876588788887426555688999999998456997899979987898667999999999999
Q ss_pred HC-CCCEEEEECCCHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 80-79599996358255407632212223224899748933332265318788808999999959999999999999997
Q 001570 860 DN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIA 938 (1051)
Q Consensus 860 ~~-~g~~vi~aTH~~el~~l~~~~~~~~~~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~ii~rA~~l~~~ 938 (1051)
.+ .|+++|++||+++++.+++..+++.|++|.+...++++.|+|++.+|.+++|||++||+++|+|++||+||++++..
T Consensus 716 ~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~~~~~l~~~ykl~~G~~~~S~gi~vA~~~GlP~~vi~rA~~~l~~ 795 (800)
T 1wb9_A 716 ANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRE 795 (800)
T ss_dssp HHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCHHHHHHHHHHHCEEEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 86239868998378899987443202377899999728917898799878999858999999819899999999999998
Q ss_pred HCC
Q ss_conf 253
Q 001570 939 CGV 941 (1051)
Q Consensus 939 ~~~ 941 (1051)
+|.
T Consensus 796 le~ 798 (800)
T 1wb9_A 796 LES 798 (800)
T ss_dssp HHT
T ss_pred HHH
T ss_conf 761
No 3
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=1.00 E-value=1 Score=909.49 Aligned_cols=702 Identities=22% Similarity=0.280 Sum_probs=560.3
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
Q ss_conf 36999999886099949999606126548898999999928876899-99999640035734378879999988952999
Q 001570 126 TLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGG-LRPESIPKAGCPVVNLRQTLDDLTRNGYSVCI 204 (1051)
Q Consensus 126 ~~~~~~~~~k~~~p~~vll~r~Gdfye~~~~DA~~~~~~l~l~~~~~-~~~~~~~~ag~P~~~~~~~l~~L~~~G~~Vai 204 (1051)
.|++|||++|++|||||||||||||||+||+||++++++|+|++|+. ...+++||||||+|+++.|+++||++||||||
T Consensus 15 p~~~qy~~iK~~~~d~~l~~r~GdFYE~f~~DA~~~~~~L~i~lt~r~~~~~~~pm~GvP~~~~~~y~~~Lv~~G~kVai 94 (765)
T 1ewq_A 15 PLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPLRAFEAYAERLLKMGFRLAV 94 (765)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEEECSSCEEEEEEEEGGGHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCEEEECHHHHHHHHHHHCCEEECCCCCCCCCCEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 49999999998789979999648615771778999999709588356788997725258388999999999977987999
Q ss_pred EECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCEEEEECCCCHHHH
Q ss_conf 72357963468961574655536997443466567899999998658989828861799986131240363138898899
Q 001570 205 VEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDAL 284 (1051)
Q Consensus 205 ~eq~e~p~~ak~~v~R~v~~vvTPGT~~~~~~l~~~~~~~~~~a~~~~gi~~~~~~~~~~s~~~~~~~~~v~e~~t~~~l 284 (1051)
|||+|+|+.+|++|+|+|++|+||||.++++++ ++.+ ||++++. ....|+.+.++.++|+|.++++.+.+.+
T Consensus 95 ~eQ~e~~~~~kg~v~R~v~~v~TpGT~~~~~~l-~~~~-n~l~ai~------~~~~~Gla~~D~stg~~~~~~~~d~~~l 166 (765)
T 1ewq_A 95 ADQVEPAEEAEGLVRREVTQLLTPGTLLQESLL-PREA-NYLAAIA------TGDGWGLAFLDVSTGEFKGTVLKSKSAL 166 (765)
T ss_dssp EEECSCGGGCSSSCCEEEEEEECGGGCCCGGGS-CSSC-CCEEEEE------ESSSEEEEEEETTTTEEEEEEESSHHHH
T ss_pred EECCCCCCCCCCCEEEEEEEEECCCEECCHHHC-CCCC-CEEEEEE------ECCEEEEEEEECCCCEEEEEEECCHHHH
T ss_conf 946888533467416899999757500353223-7778-6899999------5898999999987777999983588999
Q ss_pred HHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC---CCCCCCCCCCC
Q ss_conf 999873895439985886557888764455577875335210134654577457999998766319---99742122344
Q 001570 285 VTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYG---LENEVTFRNVT 361 (1051)
Q Consensus 285 ~~~L~~~~p~Eill~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~ll~~v~~~~g---l~~~~~~~~~~ 361 (1051)
.++|.+++|+||+++.+... +. . +++..+.||+. ..+.+.|+ +++ .
T Consensus 167 ~~~l~~~~P~Eil~~~~~~~-------~~---------~-~~~~~~~~f~~-------~~l~~~~~~~~~~~-~------ 215 (765)
T 1ewq_A 167 YDELFRHRPAEVLLAPELLE-------NG---------A-FLDEFRKRFPV-------MLSEAPFEPEGEGP-L------ 215 (765)
T ss_dssp HHHHHHHCCSEEEECHHHHH-------CH---------H-HHHHHHHHCCS-------EEECCCCCCCSSSC-H------
T ss_pred HHHHHHCCCEEEEECCCHHH-------HH---------H-HHHHCCCCCCH-------HHHHHHHCCCCCCC-H------
T ss_conf 99997269809996687377-------77---------7-76515000688-------99998846044587-7------
Q ss_pred CCCCCCCCC--E-EECHHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHC
Q ss_conf 557762200--4-425775302499999986326735897457879999973306995---3399999999967653214
Q 001570 362 VSYENRPRP--L-HLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPA---YEIASTIQAICKLMSKVTC 435 (1051)
Q Consensus 362 ~~~~~~~~~--L-yLd~aTq~ell~~~~~~sLl~~~l~~~~t~lg~r~LR~LlL~P~~---~sl~~~I~~~~t~vg~~l~ 435 (1051)
....+++ | |+ ..||.+.++ ...+..+....+|.||..|+++|+++++. ++|++.+|+|+|+||+
T Consensus 216 --~~~~a~g~ll~Yl-~~~~~~~~~----~~~~~~~~~~~~m~lD~~t~~~LEl~~~~~~~gsL~~~ld~t~T~~G~--- 285 (765)
T 1ewq_A 216 --ALRRARGALLAYA-QRTQGGALS----LQPFRFYDPGAFMRLPEATLRALEVFEPLRGQDTLFSVLDETRTAPGR--- 285 (765)
T ss_dssp --HHHHHHHHHHHHH-HHHHTSCCC----CCCCEECCGGGSCBCCHHHHHHTTSSSCSSSCCCHHHHHCCCSSHHHH---
T ss_pred --HHHHHHHHHHHHH-HHHHHCCCC----CCCCEEECCCCEEEECHHHHHHCCCCCCCCCCCHHHHHHCCCCCHHHH---
T ss_conf --9999999999999-996022125----578689777886996689997375854789611699986888797999---
Q ss_pred CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88717999999850888954399999999999986169379999996049300101501027776557679999798755
Q 001570 436 SIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRLASVRIGEMI 515 (1051)
Q Consensus 436 ~ipdlrrL~~~L~~p~a~~~dl~~I~~rl~aV~~l~~~~~l~~~l~~~l~~~~~~~g~~~dlerl~~~~~~~~~~i~~~i 515 (1051)
|+|++||.+| ++|...|..||++|.+|.+++.++..++..+..++ |++|++.++..+...+++++
T Consensus 286 -----RlL~~wl~~P---l~d~~~I~~R~~~V~~l~~~~~~~~~l~~~L~~~~-------Dler~l~r~~~~~~~~~dl~ 350 (765)
T 1ewq_A 286 -----RLLQSWLRHP---LLDRGPLEARLDRVEGFVREGALREGVRRLLYRLA-------DLERLATRLELGRASPKDLG 350 (765)
T ss_dssp -----HHHHHHHHSC---CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCC-------CHHHHHHHHHTTCCCHHHHH
T ss_pred -----HHHHHHHHCC---CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCC-------CHHHHHHHHHCCCCCHHHHH
T ss_conf -----9999976574---78999999999999999739899998899873577-------88999999972899889999
Q ss_pred HC----------------------------------CCCCHHHHCCCCCCCHHHHHHCCHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 03----------------------------------69861210167888723773020212100010133123999999
Q 001570 516 SL----------------------------------DGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEM 561 (1051)
Q Consensus 516 ~l----------------------------------~~e~~~~~~~~~~I~~~f~~~lds~~~g~V~~~~~~e~l~el~~ 561 (1051)
.+ ++++|....+++.|++++++++| +++.
T Consensus 351 ~l~~~l~~~~~l~~~l~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld-----------------~lr~ 413 (765)
T 1ewq_A 351 ALRRSLQILPELRALLGEEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLD-----------------ALRA 413 (765)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCCCCCHHHHHHHHHHBCSSCCSCTTSSCCBCTTSCHHHH-----------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHH-----------------HHHH
T ss_conf 99999999999999998775165379999999998634643442047753788789999-----------------9999
Q ss_pred HHHHHHHHHCCCCH-HHHHHHHCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 99999886205704-4786421014678998402346220332320033112343358988312134-652223467522
Q 001570 562 AAEALSLAVTEDFL-PIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQ-LKPAVDSKGRKV 639 (1051)
Q Consensus 562 la~~L~~aI~ed~l-pl~~re~~~i~~tgg~~~eI~y~~~~~~~~l~Gy~iev~i~~~~~~~~~I~~-l~~~~~~~g~~v 639 (1051)
.... .++++ .+..+++. .+++.+.+++|++.+ ||+++++.. ....++. +++.++. .
T Consensus 414 ~~~~-----~~~~l~~~~~~~~~---~~~~~~l~i~~~~~~------gy~i~v~~~----~~~~vp~~~i~~~s~----~ 471 (765)
T 1ewq_A 414 AHRE-----GVAYFLELEERERE---RTGIPTLKVGYNAVF------GYYLEVTRP----YYERVPKEYRPVQTL----K 471 (765)
T ss_dssp HHHH-----HHHHHHHHHHHHHH---HHCCTTCEEEEETTT------EEEEEEEGG----GGGGSCTTCEEEEEC----S
T ss_pred HHHH-----HHHHHHHHHHHHHH---HCCCCCEEEEECCCE------EEEEEEEHH----HHHCCCCCEEEEEEC----C
T ss_conf 9999-----99999999999999---729995589862641------599996467----650398635998722----6
Q ss_pred CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 54352148999999999999999999999999977799999999999999999999999764420023665557434332
Q 001570 640 GEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIE 719 (1051)
Q Consensus 640 ~~e~f~T~eL~ealerl~~ae~~a~e~ileiL~eL~~~L~~~i~~L~~ls~lla~Adal~~~a~~a~~~~~~~P~~~~~~ 719 (1051)
+.++|+|+++++.++++.++..++...+.+++.++...+..+...+..+...++.+|+++++|..+...+||+|++ +
T Consensus 472 ~~~rf~tp~l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~la~LD~l~s~a~~a~~~~~~~P~~-~-- 548 (765)
T 1ewq_A 472 DRQRYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRF-G-- 548 (765)
T ss_dssp SEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBCCEE-S--
T ss_pred CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC-C--
T ss_conf 8757877899999999999999999999999999999999989999999999999999995499998679334135-7--
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCEEEEEEEE-CEEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHH
Q ss_conf 3456410323557762124799536656760-308999907999822499879756773102501147877811599999
Q 001570 720 LDGANCLKMNGLSPYWFDAAEGSAVHNTVDM-QSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIM 798 (1051)
Q Consensus 720 ~~~~~~~~~~~~~p~~~~~~~~~~v~ndi~l-g~i~~ItGpNgsGKSTlLk~I~~~~~la~~G~~Vpa~~a~i~~~d~i~ 798 (1051)
..+.+++.+||.+.. ++.+++||+++ |++++|+|||||||||+||+++++..+++.|.++|+..+.++++++++
T Consensus 549 ----~~i~i~~~rHP~le~-~~~~vl~disl~g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~ 623 (765)
T 1ewq_A 549 ----DRLQIRAGRHPVVER-RTEFVPNDLEMAHELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIY 623 (765)
T ss_dssp ----SSEEEEEECCTTGGG-TSCCCCEEEEESSCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEE
T ss_pred ----CCEEEEEEECCEECC-CCCEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEHHCCCEEEHHHHH
T ss_conf ----738999727863706-884575110577868999999998768999999865653116855304405134377765
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHC
Q ss_conf 85698999458734306998999999997699939998189999997989999999999998079599996358255407
Q 001570 799 LHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLHGIFSL 878 (1051)
Q Consensus 799 ~~i~~~d~~~~~~Stf~~em~~i~~il~~a~~~sLiLlDEp~~Gtd~~~g~~i~~~ile~l~~~g~~vi~aTH~~el~~l 878 (1051)
.+++..+++..+.|+|+.+|.+++.++..+++|+++|+||||+||++.|+.++++++++++.+.|+++|++||+++++.+
T Consensus 624 ~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~~ 703 (765)
T 1ewq_A 624 TRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL 703 (765)
T ss_dssp EECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 31978999874236778999999999985668978999889988887689999999999999689989999278899976
Q ss_pred CCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 63221222322489974893333226531878880899999995999999999999999725
Q 001570 879 PLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAEDLYIACG 940 (1051)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~ii~rA~~l~~~~~ 940 (1051)
+ .+++.|.+|.+...++++.|+|++.+|.+++|||++||+++|+|++||+||++++..+|
T Consensus 704 ~--~~~v~n~~~~~~~~~~~l~f~ykl~~G~~~~Sygi~vA~~aGlP~~VI~rA~~~l~~le 763 (765)
T 1ewq_A 704 G--LPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAMA 763 (765)
T ss_dssp C--CTTEEEEEEEEECCSSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred H--HHCCEEEEEEEEECCCEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 5--41605899999970890789878977899996699999982989999999999999874
No 4
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=1.00 E-value=1 Score=887.14 Aligned_cols=759 Identities=18% Similarity=0.188 Sum_probs=546.2
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 36999999886099949999606126548898999999928876899999996400357343788799999889529997
Q 001570 126 TLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIV 205 (1051)
Q Consensus 126 ~~~~~~~~~k~~~p~~vll~r~Gdfye~~~~DA~~~~~~l~l~~~~~~~~~~~~~ag~P~~~~~~~l~~L~~~G~~Vai~ 205 (1051)
.|++|||++|++|||||||||||||||+||+||++++++|+|++|+ +++||||||+|+++.|+++||++|||||||
T Consensus 70 Pmm~Qy~~iK~~~~d~llffr~GdFYElf~~DA~~~a~~L~i~lt~----~~~pmaGvP~ha~~~yl~~Lv~~GykVai~ 145 (1022)
T 2o8b_B 70 PGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGVSELGLVFMK----GNWAHSGFPEIAFGRYSDSLVQKGYKVARV 145 (1022)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHCCCCCS----SSSCEEEEEGGGHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCEEEEEHHHHHHHHHHCCEEEEC----CCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8999999978758998999977977998441599999850948722----887778985607999999999879969999
Q ss_pred ECCCCCCC-----------CC--CCCEEEEEEEECCCCCCCCCC---CCCCCCCCCCCCCCEEEEECC-------CCEEE
Q ss_conf 23579634-----------68--961574655536997443466---567899999998658989828-------86179
Q 001570 206 EEVQGPTQ-----------AR--SRKSRFISGHAHPGSPYVFGL---VGIDHDLDFPEPMPVIGVSRS-------AKGYC 262 (1051)
Q Consensus 206 eq~e~p~~-----------ak--~~v~R~v~~vvTPGT~~~~~~---l~~~~~~~~~~a~~~~gi~~~-------~~~~~ 262 (1051)
||+|+|+. +| ++|+|+|+|||||||.+++.+ ++...+ ||++ +|... ...|+
T Consensus 146 eQ~e~p~~~~~r~~~~~~~~k~~~~v~Rev~rvvTpGT~~d~~~~~~l~~~~~-n~l~-----ai~~~~~~~~~~~~~~G 219 (1022)
T 2o8b_B 146 EQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYS-KYLL-----SLKEKEEDSSGHTRAYG 219 (1022)
T ss_dssp EECSCHHHHHHHHHTCSSCCSGGGSCCEEEEEEECTTSCCCCTTSCCCSCSSC-CEEE-----EEEEEECSCC-CCEEEE
T ss_pred ECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCEEECCCCCCCCCCCCC-CEEE-----EEEECCCCCCCCCCEEE
T ss_conf 48898035445443203555568853651799988986665432344467778-6899-----99982356667776799
Q ss_pred EEEECCCCCEEEEECCCC---HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCC-C-C--------CCCCCCCCCC---
Q ss_conf 998613124036313889---8899999873895439985886557888764455-5-7--------7875335210---
Q 001570 263 IISILETMKTYSLEDGLT---EDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGE-Y-G--------EGGLLWGECI--- 326 (1051)
Q Consensus 263 ~~s~~~~~~~~~v~e~~t---~~~l~~~L~~~~p~Eill~~~~~~~~~~~~~~~~-~-~--------~~~~l~~~~~--- 326 (1051)
.+.++.++|+|.++++.+ .+.+.++|.+++|+||+++.+..... +.+... . . ....+|....
T Consensus 220 la~~D~sTGe~~~~e~~d~~~~~~L~~~L~~~~P~Eil~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1022)
T 2o8b_B 220 VCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKE--TKTILKSSLSCSLQEGLIPGSQFWDASKTLR 297 (1022)
T ss_dssp EEEECTTTCCEEEEEEEECSSCHHHHHHHHHSCEEEEEEETTTCCHH--HHHHHTTTTTTSEEEEECBTTTBCCHHHHHH
T ss_pred EEEEECCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCHH--HHHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
T ss_conf 99999877879999942841799999999842984899557766667--8898875311444530366301100566776
Q ss_pred CCCC-CCCCCCH-------HHHHHHHHH---HHCCCCCCCCCCCCCCCCCCCCCC--E-EECHHHHH--CCCC-----CC
Q ss_conf 1346-5457745-------799999876---631999742122344557762200--4-42577530--2499-----99
Q 001570 327 ARHF-EWFEGDP-------VIELLLKVK---ELYGLENEVTFRNVTVSYENRPRP--L-HLGTATQI--GAIP-----TE 385 (1051)
Q Consensus 327 ~~~~-~~f~~~~-------~~~ll~~v~---~~~gl~~~~~~~~~~~~~~~~~~~--L-yLd~aTq~--ell~-----~~ 385 (1051)
.... .+|.... ....+.... +.+|+.... ....+..+++ | || ..||. +++. +.
T Consensus 298 ~l~~~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~a~~A~gall~Yl-~~~~~~~~~~~~~~~~~~ 371 (1022)
T 2o8b_B 298 TLLEEEYFREKLSDGIGVMLPQVLKGMTSESDSIGLTPGE-----KSELALSALGGCVFYL-KKCLIDQELLSMANFEEY 371 (1022)
T ss_dssp HHHHTTTTSSSSCCCC-CCCCHHHHHTEECCSTTCSEECG-----GGHHHHHHHHHHHHHH-HHHTCHHHHHTTCCEEEC
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHCCCCCCC-----CCHHHHHHHHHHHHHH-HHHCCCHHHHCCCCCCCC
T ss_conf 5435543044222111023589998741012211665432-----5389999999999999-996721222113554420
Q ss_pred CCCC---------CCEEECCCCCCCCCHHHHHHHHHCCCC------CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf 9986---------326735897457879999973306995------3399999999967653214887179999998508
Q 001570 386 GIPC---------LLKVLLPSNCSGLPILYVRDLLLNPPA------YEIASTIQAICKLMSKVTCSIPEFTCLVKLLELR 450 (1051)
Q Consensus 386 ~~~s---------Ll~~~l~~~~t~lg~r~LR~LlL~P~~------~sl~~~I~~~~t~vg~~l~~ipdlrrL~~~L~~p 450 (1051)
..++ ....+....+|.||..|+|||||+++. |||+|.||+|+|+||+ |+|++||.+|
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~m~LD~~T~~nLEl~~~~~~g~~~gSLl~~Ld~t~T~mG~--------RLLr~WL~~P 443 (1022)
T 2o8b_B 372 IPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGK--------RLLKQWLCAP 443 (1022)
T ss_dssp CCGGGGTCC---------CCCCBCBCCHHHHHHTTCSSCCSSSSCCCSHHHHHCCCSSHHHH--------HHHHHHHHSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCHHH--------HHHHHHHHCC
T ss_conf 56420122222222111477885983889998624774578999888089871757895648--------9999998574
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHH-HH---------------------
Q ss_conf 88954399999999999986169379999996049300101501027776557679-99---------------------
Q 001570 451 EANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVATGLKIDFETLVEECRL-AS--------------------- 508 (1051)
Q Consensus 451 ~a~~~dl~~I~~rl~aV~~l~~~~~l~~~l~~~l~~~~~~~g~~~dlerl~~~~~~-~~--------------------- 508 (1051)
++|...|.+||++|++|.+++.++..++..|..++ |+||+++++.. +.
T Consensus 444 ---L~d~~~I~~RldaVe~l~~~~~~~~~l~~~L~~i~-------DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~~~~ 513 (1022)
T 2o8b_B 444 ---LCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLP-------DLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYS 513 (1022)
T ss_dssp ---BCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTCC-------CHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCC-------CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf ---67999999999999999839589999999970486-------68999999974277543334520233333331115
Q ss_pred -HHHHHHHHCC-------------------CCCHHHHCCC--------CCCCH--HHH----HHCCHHH---HHHH-HHC
Q ss_conf -9798755036-------------------9861210167--------88872--377----3020212---1000-101
Q 001570 509 -VRIGEMISLD-------------------GESDQKICSY--------DNIPS--EFF----EDMESTW---KGRV-KRI 550 (1051)
Q Consensus 509 -~~i~~~i~l~-------------------~e~~~~~~~~--------~~I~~--~f~----~~lds~~---~g~V-~~~ 550 (1051)
..+++++... -..+.+..-. +.+++ +.. ..++.+. .|.+ .+.
T Consensus 514 ~~~l~~l~~~l~~l~~~~~i~~~l~~~~~~~~s~lL~~~~~~~~~~~~~~~~~l~~~~~~~~~~id~~~~~~~g~i~~~~ 593 (1022)
T 2o8b_B 514 KKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKA 593 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTSBTTTSSSSCBCCCHHHHHHHHTTSCHHHHHHSCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCEEECC
T ss_conf 44499999999999999999999986430257699999997430244445077999999999872804341189674479
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCC-CCC-C
Q ss_conf 33123999999999998862057044786421014678998402346220332320033112343358988312-134-6
Q 001570 551 HIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQ-IKQ-L 628 (1051)
Q Consensus 551 ~~~e~l~el~~la~~L~~aI~ed~lpl~~re~~~i~~tgg~~~eI~y~~~~~~~~l~Gy~iev~i~~~~~~~~~-I~~-l 628 (1051)
.+.+++++++.....+...+. .+..+++. .+++.+.++...+.+ +|+++++.. .... ++. +
T Consensus 594 g~~~~ld~~r~~~~~~~~~l~----~~~~~~~~---~~~~~~l~~~~~~~~------~y~i~v~~~----~~~~~vp~~~ 656 (1022)
T 2o8b_B 594 GFDSDYDQALADIRENEQSLL----EYLEKQRN---RIGCRTIVYWGIGRN------RYQLEIPEN----FTTRNLPEEY 656 (1022)
T ss_dssp CC-CHHHHHHHHHHHHHHHHH----HHHTSSGG---GSSCSCCEEECCGGG------CCEEEECTT----TTSSCCCC-C
T ss_pred CCCHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHCCCCEEEEEECCC------EEEEEEEHH----HHCCCCCCCE
T ss_conf 999889999999999999999----99999999---849986357874276------699997445----5215589734
Q ss_pred CCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 522234675225435214899999999999999999999999997779999999999999999999999976442002--
Q 001570 629 KPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGR-- 706 (1051)
Q Consensus 629 ~~~~~~~g~~v~~e~f~T~eL~ealerl~~ae~~a~e~ileiL~eL~~~L~~~i~~L~~ls~lla~Adal~~~a~~a~-- 706 (1051)
++.+ +..+.++|+|+++++.++++..++.+....+.+++.++...+..+...+..+...++.+|+++++|..+.
T Consensus 657 ~~~~----t~~~~~rf~t~el~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~ 732 (1022)
T 2o8b_B 657 ELKS----TKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGG 732 (1022)
T ss_dssp EEEE----ETTEEEECCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEEE----ECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8865----136850796157889999999999999999999999999999999999999999999999999579998643
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECC-CCCCCC-CCCCCCEEEEEEEE-----------CEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 366555743433234564103235-577621-24799536656760-----------30899990799982249987975
Q 001570 707 RRKWVFPALKDIELDGANCLKMNG-LSPYWF-DAAEGSAVHNTVDM-----------QSLFLLTGPNGGGKSSLLRSICA 773 (1051)
Q Consensus 707 ~~~~~~P~~~~~~~~~~~~~~~~~-~~p~~~-~~~~~~~v~ndi~l-----------g~i~~ItGpNgsGKSTlLk~I~~ 773 (1051)
..+||+|++++. .+....+.+++ .||+.. .+.++.+++||++| |++++||||||||||||||+++.
T Consensus 733 ~~~~~~P~~~~~-~~~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 733 DGPMCRPVILLP-EDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp SSCEECCEECCT-TTSCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCCCCCCC-CCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 678517754567-7998639999262557999955895575445533554445577884899988999986899999988
Q ss_pred HHHHHHCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHH
Q ss_conf 67731025011478778115999998569899945873430699899999999769993999818999999798999999
Q 001570 774 ASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAG 853 (1051)
Q Consensus 774 ~~~la~~G~~Vpa~~a~i~~~d~i~~~i~~~d~~~~~~Stf~~em~~i~~il~~a~~~sLiLlDEp~~Gtd~~~g~~i~~ 853 (1051)
+.+|+|+|+||||+.+.++.+|.|+.++|..+++..+.|+|++||++++.+++.+++++||||||||+|||+.+|.++++
T Consensus 812 ~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~ 891 (1022)
T 2o8b_B 812 LAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIAN 891 (1022)
T ss_dssp HHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHH
T ss_pred HHHHHHEEEEECCCCCCCCHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 99986626885267677979999999769778886154332899999999997488996899979988898678999999
Q ss_pred HHHHHHHCC-CCEEEEECCCHHHHHCCCCCCCCCCCEEEEEE-------ECCCEEEEEEEECCCCCCCHHHHHHHHCCCC
Q ss_conf 999999807-95999963582554076322122232248997-------4893333226531878880899999995999
Q 001570 854 SIIETLDNI-GCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEY-------LDGQTVPTWKLVDGICRESLAFETAKREGVP 925 (1051)
Q Consensus 854 ~ile~l~~~-g~~vi~aTH~~el~~l~~~~~~~~~~~~~~~~-------~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp 925 (1051)
++++++.+. |+++||+|||++++........+.+++|.+.. .++.+.++|++.+|.+++|||+++|+++|+|
T Consensus 892 ~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g~~~~~~~~~~~~~~~~~l~~ly~l~~G~~~~Sygi~vA~l~Glp 971 (1022)
T 2o8b_B 892 AVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLP 971 (1022)
T ss_dssp HHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEEEEEEEC-------------CEEEEEESSCCCCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCCEEEEEECCHHHHHHHCCCCEEECCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCC
T ss_conf 99999986479989999698999998578543152769999705723378773588853247999987999999980979
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 99999999999972534
Q 001570 926 ETIIQRAEDLYIACGVN 942 (1051)
Q Consensus 926 ~~ii~rA~~l~~~~~~~ 942 (1051)
++||++|++++..+|..
T Consensus 972 ~~vi~rA~~~~~~le~~ 988 (1022)
T 2o8b_B 972 EEVIQKGHRKAREFEKM 988 (1022)
T ss_dssp HHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999978
No 5
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=1.00 E-value=1 Score=826.28 Aligned_cols=766 Identities=18% Similarity=0.195 Sum_probs=571.0
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCC----CC-CCCCCCCCCCCCCCHHHHHHH-HHHCC
Q ss_conf 3699999988609994999960612654889899999992887689----99-999964003573437887999-99889
Q 001570 126 TLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFG----GL-RPESIPKAGCPVVNLRQTLDD-LTRNG 199 (1051)
Q Consensus 126 ~~~~~~~~~k~~~p~~vll~r~Gdfye~~~~DA~~~~~~l~l~~~~----~~-~~~~~~~ag~P~~~~~~~l~~-L~~~G 199 (1051)
.+..||+++|+||||||+|||+|||||+||+||..+|+++.++.+. |. ...++|++++|.++++.|+++ |+++|
T Consensus 18 ~f~~~y~~Lk~k~~dtv~~F~~GdfYe~~~~DA~~vA~~l~~t~~~~k~~~~~~~~~~~~v~i~~~~~~~~l~~~Ll~~g 97 (934)
T 3thx_A 18 GFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLLVRQ 97 (934)
T ss_dssp HHHHHHHTSCCCCTTEEEEEECSSEEEEETHHHHHHHHHTTSSSTTCEEESSSSCCCEEEEEEEHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCCCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCC
T ss_conf 79999986664699969999738744563646999999971300565404778777877564079999999999999769
Q ss_pred CEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCC-CCCCCCCCCCCCCCCCEEEEEC----CCCEEEEEEECCCCCEEE
Q ss_conf 52999723579634689615746555369974434-6656789999999865898982----886179998613124036
Q 001570 200 YSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVF-GLVGIDHDLDFPEPMPVIGVSR----SAKGYCIISILETMKTYS 274 (1051)
Q Consensus 200 ~~Vai~eq~e~p~~ak~~v~R~v~~vvTPGT~~~~-~~l~~~~~~~~~~a~~~~gi~~----~~~~~~~~s~~~~~~~~~ 274 (1051)
|||+||||.+++ .+++.++|+|++++||||+.+. +++..+.+ ...++++++|.. ....|+.+.++.++|+|.
T Consensus 98 ~rVei~~q~~~~-~~~~~~~r~l~~~~TPGnl~~~ed~L~~~~d--~~~~~~l~AIk~~~~~~~~~~Gla~~D~stge~~ 174 (934)
T 3thx_A 98 YRVEVYKNRAGN-KASKENDWYLAYKASPGNLSQFEDILFGNND--MSASIGVVGVKMSAVDGQRQVGVGYVDSIQRKLG 174 (934)
T ss_dssp CEEEEEEECC-----CCCCCEEEEEEEBTTBCTTCHHHHC----------CCEEEEEECCSSSSCEEEEEEEETTTTEEE
T ss_pred CEEEEEECCCCC-CCCCCCCEEEEEEECCCCHHHHHHHHHCCCC--CCCCCEEEEEEEEECCCCCEEEEEEEECCCCEEE
T ss_conf 779998257864-3467651589998889708888887514654--3336427999995058886799999998887699
Q ss_pred EECCCCH---HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHCC
Q ss_conf 3138898---899999873895439985886557888764455577875335210134654-577457999998766319
Q 001570 275 LEDGLTE---DALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEW-FEGDPVIELLLKVKELYG 350 (1051)
Q Consensus 275 v~e~~t~---~~l~~~L~~~~p~Eill~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-f~~~~~~~ll~~v~~~~g 350 (1051)
++++.+. ..+.++|.+++|+||+++.+..... ..++..+... .+..++..+.| |+.+.+...+... ++
T Consensus 175 ~~~~~d~~~~~~l~~~l~~~~P~Eil~~~~~~~~~--~~~l~~~~~~---~~~~~~~~~~~~f~~~~~~~~l~~~---~~ 246 (934)
T 3thx_A 175 LCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGD--MGKLRQIIQR---GGILITERKKADFSTKDIYQDLNRL---LK 246 (934)
T ss_dssp EEEEECCTTCHHHHHHHHHHCCSEEEEESSCCCHH--HHHHHHHHHH---HTCEEEEECGGGGCCSSHHHHHHHH---BC
T ss_pred EEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCC--HHHHHHHHHH---CCCEEEECCHHHCCHHHHHHHHHHH---HC
T ss_conf 99657725899999999867985999607877510--7899999860---6844785662426877899999998---54
Q ss_pred CCCC---CC--CCCCCCCCCCCCCC--E-EECHHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCC------
Q ss_conf 9974---21--22344557762200--4-425775302499999986326735897457879999973306995------
Q 001570 351 LENE---VT--FRNVTVSYENRPRP--L-HLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPA------ 416 (1051)
Q Consensus 351 l~~~---~~--~~~~~~~~~~~~~~--L-yLd~aTq~ell~~~~~~sLl~~~l~~~~t~lg~r~LR~LlL~P~~------ 416 (1051)
.... .. +.....+.+..|++ | || ..||.+...+ ...+..+....+|.||..|+|||+|+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~a~gall~Yl-~~~~~~~~~~---~~~~~~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~ 322 (934)
T 3thx_A 247 GKKGEQMNSAVLPEMENQVAVSSLSAVIKFL-ELLSDDSNFG---QFELTTFDFSQYMKLDIAAVRALNLFQGSVEDTTG 322 (934)
T ss_dssp CCTTSCCCGGGCGGGGCHHHHHHHHHHHHHH-TGGGCGGGTT---CBEEEECCGGGBCEECHHHHHHTTSCC--------
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHCCCCCCC---CCCCEEECCCCEEEECHHHHHHCCCCCCCCCCCCC
T ss_conf 2454444434444334289999999999999-9966754335---46535776788598578889636126457999877
Q ss_pred -CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH-CCCCHHHCCCCH
Q ss_conf -339999999996765321488717999999850888954399999999999986169379999996-049300101501
Q 001570 417 -YEIASTIQAICKLMSKVTCSIPEFTCLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILEL-LMDPTWVATGLK 494 (1051)
Q Consensus 417 -~sl~~~I~~~~t~vg~~l~~ipdlrrL~~~L~~p~a~~~dl~~I~~rl~aV~~l~~~~~l~~~l~~-~l~~~~~~~g~~ 494 (1051)
+||+|.||+|+|+||+ |+|++||.+| ++|...|..||++|++|.+++.++..++. .|..++
T Consensus 323 ~~SL~~~ld~t~T~~G~--------RlLr~wl~~P---l~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~~L~~i~------ 385 (934)
T 3thx_A 323 SQSLAALLNKCKTPQGQ--------RLVNQWIKQP---LMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFP------ 385 (934)
T ss_dssp -CCHHHHHCCCSSHHHH--------HHHHHHHHSC---BCCHHHHHHHHHHHHHHHSCHHHHHHHHTTTGGGCC------
T ss_pred CCCHHHHHCCCCCHHHH--------HHHHHHHHCC---CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCC------
T ss_conf 77499986457787999--------9999997486---889999999999999985095899999999864787------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHCCC--------CCCCH--------------HHHHHCCH-----HH-
Q ss_conf 027776557679999798755036---9861210167--------88872--------------37730202-----12-
Q 001570 495 IDFETLVEECRLASVRIGEMISLD---GESDQKICSY--------DNIPS--------------EFFEDMES-----TW- 543 (1051)
Q Consensus 495 ~dlerl~~~~~~~~~~i~~~i~l~---~e~~~~~~~~--------~~I~~--------------~f~~~lds-----~~- 543 (1051)
|++|+++++....+.++|++.+- ...|.+...+ ..+.. .+.+.++. +.
T Consensus 386 -DleRl~~ri~~~~~~~~dl~~l~~~l~~~~~l~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~i~~~i~~~~~~ 464 (934)
T 3thx_A 386 -DLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQVE 464 (934)
T ss_dssp -CHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHHTCCSSSTTGGGGTHHHHHHHHHHHHHHHHHHHTTBCTTGGG
T ss_pred -CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf -8999999996289999999999999999999999998553311067898888899988765999999999985723142
Q ss_pred HH-HHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 10-00101331239999999999988620570447864210146789984023462203323200331123433589883
Q 001570 544 KG-RVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGE 622 (1051)
Q Consensus 544 ~g-~V~~~~~~e~l~el~~la~~L~~aI~ed~lpl~~re~~~i~~tgg~~~eI~y~~~~~~~~l~Gy~iev~i~~~~~~~ 622 (1051)
.| .+-+..+.+.+++++...+.+...+. .+..+++......++.+.++.|++.+ ||||+++....
T Consensus 465 ~g~~~i~~g~~~~Ld~lr~~~~~~~~~l~----~~~~~~~~~~~~~~~~~lk~~~~~~~------Gy~i~v~~~~~---- 530 (934)
T 3thx_A 465 NHEFLVKPSFDPNLSELREIMNDLEKKMQ----STLISAARDLGLDPGKQIKLDSSAQF------GYYFRVTCKEE---- 530 (934)
T ss_dssp TTCCCBCTTSSHHHHHHHHHHHHHHHHHH----HHHHHHHHHSCCCBTTTBEEEECC--------CEEEEECHHHH----
T ss_pred CCCCEECCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCCEEEEEEECCC------EEEEEEEECHH----
T ss_conf 49951389989999999999999999999----99999999848985652799981640------28999984265----
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12134652223467522543521489999999999999999999999999777999999999999999999999997644
Q 001570 623 EQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHV 702 (1051)
Q Consensus 623 ~~I~~l~~~~~~~g~~v~~e~f~T~eL~ealerl~~ae~~a~e~ileiL~eL~~~L~~~i~~L~~ls~lla~Adal~~~a 702 (1051)
.....+..|...++..+.++|+|+++++.++++..+..++.+...+++.++...+..+...+..+...++.+|++.|+|
T Consensus 531 -~~~~~~~~~~~~~t~~~~~rf~t~el~~l~~~~~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A 609 (934)
T 3thx_A 531 -KVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFA 609 (934)
T ss_dssp -TTTTTCSSCEEEEEC--CEEEECTTHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HCCCCCCCCEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -4457887818997135739998989999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCC--CCCCCCCCCCCCCCCCCCEEECCC-CCCCCCCCCCCEEEEEEEE----CEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 20023--665557434332345641032355-7762124799536656760----3089999079998224998797567
Q 001570 703 SEGRR--RKWVFPALKDIELDGANCLKMNGL-SPYWFDAAEGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAAS 775 (1051)
Q Consensus 703 ~~a~~--~~~~~P~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~v~ndi~l----g~i~~ItGpNgsGKSTlLk~I~~~~ 775 (1051)
..+.. .+||+|++++. +...+.+.+. ||+.....++.+++||+++ |++++||||||||||||||+++++.
T Consensus 610 ~~a~~~~~~~~rP~~~~~---~~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~ 686 (934)
T 3thx_A 610 HVSNGAPVPYVRPAILEK---GQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIV 686 (934)
T ss_dssp HHHHTSSSCCBCCEEECT---TSCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCEECCC---CCCCEEEECCCCCHHHHCCCCEEECCCCEEECCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999856689848700027---87540763675612443378606534533303797189998889987779999999989
Q ss_pred HHHHCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 73102501147877811599999856989994587343069989999999976999399981899999979899999999
Q 001570 776 LLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSI 855 (1051)
Q Consensus 776 ~la~~G~~Vpa~~a~i~~~d~i~~~i~~~d~~~~~~Stf~~em~~i~~il~~a~~~sLiLlDEp~~Gtd~~~g~~i~~~i 855 (1051)
+|+|.|+|||+..+.++.++.++.+++..+++..+.|+|+.+|.+++.++..+++|+|+||||||+|||+.++.++++++
T Consensus 687 ~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~i 766 (934)
T 3thx_A 687 LMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAI 766 (934)
T ss_dssp HHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 98762884344233004999999863816538775766679999999999846399199996998899999999999999
Q ss_pred HHHHHC-CCCEEEEECCCHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999980-7959999635825540763221222322489974893333226531878880899999995999999999999
Q 001570 856 IETLDN-IGCLGIVSTHLHGIFSLPLKIKNAAYKAMGTEYLDGQTVPTWKLVDGICRESLAFETAKREGVPETIIQRAED 934 (1051)
Q Consensus 856 le~l~~-~g~~vi~aTH~~el~~l~~~~~~~~~~~~~~~~~~~~l~~~y~l~~G~~~~s~ai~vA~~~Glp~~ii~rA~~ 934 (1051)
++++.+ .|+++|++|||++++.+++....+.++++.+...++++.++|++.+|.+++|||++||+++|+|+.||+||++
T Consensus 767 l~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~~~y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~ 846 (934)
T 3thx_A 767 SEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQ 846 (934)
T ss_dssp HHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEECCCHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99998567999999927379998732040007669999844882778888866888986499999983989999999999
Q ss_pred HHHHHCCC
Q ss_conf 99972534
Q 001570 935 LYIACGVN 942 (1051)
Q Consensus 935 l~~~~~~~ 942 (1051)
++..+|..
T Consensus 847 ~~~~le~~ 854 (934)
T 3thx_A 847 KALELEEF 854 (934)
T ss_dssp HHHHTTTT
T ss_pred HHHHHHHC
T ss_conf 99999712
No 6
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=1.00 E-value=1 Score=166.63 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=115.2
Q ss_pred CCCEEEEEEEE----CEEEEEECCCCCCCCHHHHHHHHHHHH----------------------HHCCEEECCCCCCHHH
Q ss_conf 99536656760----308999907999822499879756773----------------------1025011478778115
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL----------------------GICGLMVPAESASIPY 793 (1051)
Q Consensus 740 ~~~~v~ndi~l----g~i~~ItGpNgsGKSTlLk~I~~~~~l----------------------a~~G~~Vpa~~a~i~~ 793 (1051)
++..+++|++| |++++|+||||||||||+|+|+|+... .....||||..+.+|.
T Consensus 15 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ 94 (359)
T 3fvq_A 15 QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPH 94 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTT
T ss_pred CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCHHHCCEEEEECCCCCCCC
T ss_conf 99888975389995998999999998059999999966998997389999999754556655410888999078757899
Q ss_pred ------------------------HHHHHHHCCCCCCCCCCCCCHHHHHHH-HHHHHHHCCCCCEEEECCCCCCCCHHHH
Q ss_conf ------------------------999998569899945873430699899-9999997699939998189999997989
Q 001570 794 ------------------------FDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKG 848 (1051)
Q Consensus 794 ------------------------~d~i~~~i~~~d~~~~~~Stf~~em~~-i~~il~~a~~~sLiLlDEp~~Gtd~~~g 848 (1051)
+..++..++..+...+..+.+|++++| ++.+.+.+.+|+++|||||++|+|+...
T Consensus 95 ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r 174 (359)
T 3fvq_A 95 LTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLR 174 (359)
T ss_dssp SCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 99999999999876998689999999999886990375589245799999999999999739999999697436799999
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHH-CCCCCCCCCCCEEEE
Q ss_conf 99999999999807959999635825540-763221222322489
Q 001570 849 TCIAGSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAMGT 892 (1051)
Q Consensus 849 ~~i~~~ile~l~~~g~~vi~aTH~~el~~-l~~~~~~~~~~~~~~ 892 (1051)
..+...+.+..++.|.++|++||+.+.+. ++++...+..+.+..
T Consensus 175 ~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~ 219 (359)
T 3fvq_A 175 RQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQ 219 (359)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 999999999998579989999499999998799999998998999
No 7
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=1.00 E-value=1 Score=164.09 Aligned_cols=153 Identities=19% Similarity=0.139 Sum_probs=113.3
Q ss_pred CCCEEEEEEEE----CEEEEEECCCCCCCCHHHHHHHHHHHH------------------HHCCEEECCCCCCHHH----
Q ss_conf 99536656760----308999907999822499879756773------------------1025011478778115----
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY---- 793 (1051)
Q Consensus 740 ~~~~v~ndi~l----g~i~~ItGpNgsGKSTlLk~I~~~~~l------------------a~~G~~Vpa~~a~i~~---- 793 (1051)
++..++++++| |++++|+|||||||||++|+|+|+... .....||||+.+.+|.
T Consensus 14 g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~ 93 (381)
T 3rlf_A 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVA 93 (381)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHH
T ss_pred CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHH
T ss_conf 99999965689987998999996899559999999976998897199999999987997788889990687578999999
Q ss_pred --------------------HHHHHHHCCCCCCCCCCCCCHHHHHHH-HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHH
Q ss_conf --------------------999998569899945873430699899-99999976999399981899999979899999
Q 001570 794 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIA 852 (1051)
Q Consensus 794 --------------------~d~i~~~i~~~d~~~~~~Stf~~em~~-i~~il~~a~~~sLiLlDEp~~Gtd~~~g~~i~ 852 (1051)
+..++..++..+...+..+.+|++++| ++.+.+.+.+|+++|||||++++|+.....+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~ 173 (381)
T 3rlf_A 94 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 173 (381)
T ss_dssp HHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 99999997759998999999999998859941653992579999999999999998199999998987679999999999
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHH-HCCCCCCCCCCCEEEE
Q ss_conf 999999980795999963582554-0763221222322489
Q 001570 853 GSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAMGT 892 (1051)
Q Consensus 853 ~~ile~l~~~g~~vi~aTH~~el~-~l~~~~~~~~~~~~~~ 892 (1051)
..+.+...+.|.++|++||+.+.+ .++++...+..+.+..
T Consensus 174 ~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~ 214 (381)
T 3rlf_A 174 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214 (381)
T ss_dssp HHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 99999998679889999889999998699999998998999
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=1.00 E-value=1 Score=161.22 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=109.1
Q ss_pred CCCEEEEEEEE----CEEEEEECCCCCCCCHHHHHHHHHHHH------------------HHCCEEECCCCCCHHH----
Q ss_conf 99536656760----308999907999822499879756773------------------1025011478778115----
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY---- 793 (1051)
Q Consensus 740 ~~~~v~ndi~l----g~i~~ItGpNgsGKSTlLk~I~~~~~l------------------a~~G~~Vpa~~a~i~~---- 793 (1051)
++..++++++| |++++|+||||||||||||+|+|+... .....|||+..+.++.
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 105 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVY 105 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHH
T ss_pred CCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHH
T ss_conf 99789963489997997999998999709999999967998896199999999986876457489992686357898899
Q ss_pred --------------------HHHHHHHCCCCCCCCCCCCCHHHHHHH-HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHH
Q ss_conf --------------------999998569899945873430699899-99999976999399981899999979899999
Q 001570 794 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIA 852 (1051)
Q Consensus 794 --------------------~d~i~~~i~~~d~~~~~~Stf~~em~~-i~~il~~a~~~sLiLlDEp~~Gtd~~~g~~i~ 852 (1051)
++.++..++..+...+..+++|++++| ++.+.+.+.+|+++|||||++|+|+.....+.
T Consensus 106 eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 185 (355)
T 1z47_A 106 DNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR 185 (355)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 99999997749987899999999998769945860992018999999999999997399989996974368999999999
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHH-CCCCCCCCCCCEE
Q ss_conf 9999999807959999635825540-7632212223224
Q 001570 853 GSIIETLDNIGCLGIVSTHLHGIFS-LPLKIKNAAYKAM 890 (1051)
Q Consensus 853 ~~ile~l~~~g~~vi~aTH~~el~~-l~~~~~~~~~~~~ 890 (1051)
..+.+...+.|.++|++||+.+.+. +++....+..+.+
T Consensus 186 ~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 186 TFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp HHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEE
T ss_conf 999999986699999997999999986999999989999
No 9
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=161.12 Aligned_cols=151 Identities=14% Similarity=0.085 Sum_probs=110.0
Q ss_pred CCCEEEEEEEE----CEEEEEECCCCCCCCHHHHHHHHHHHH------------------HHCCEEECCCCCCHHH----
Q ss_conf 99536656760----308999907999822499879756773------------------1025011478778115----
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY---- 793 (1051)
Q Consensus 740 ~~~~v~ndi~l----g~i~~ItGpNgsGKSTlLk~I~~~~~l------------------a~~G~~Vpa~~a~i~~---- 793 (1051)
++..++++++| |++++|+||||||||||||+|+|+... .....||||..+.++.
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (359)
T 2yyz_A 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVF 93 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHH
T ss_pred CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHH
T ss_conf 99888965589986998999996898239999999977998896299999999987986458489990686457998899
Q ss_pred --------------------HHHHHHHCCCCCCCCCCCCCHHHHHHH-HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHH
Q ss_conf --------------------999998569899945873430699899-99999976999399981899999979899999
Q 001570 794 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIA 852 (1051)
Q Consensus 794 --------------------~d~i~~~i~~~d~~~~~~Stf~~em~~-i~~il~~a~~~sLiLlDEp~~Gtd~~~g~~i~ 852 (1051)
++.++..++..+...+..+++|++++| ++.+.+.+.+|+++|||||++|+|+.....+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 173 (359)
T 2yyz_A 94 ENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMR 173 (359)
T ss_dssp HHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 99999997659987999999999998869953762893469999999999999997199989998975368999999999
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHH-HCCCCCCCCCCCEE
Q ss_conf 999999980795999963582554-07632212223224
Q 001570 853 GSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 853 ~~ile~l~~~g~~vi~aTH~~el~-~l~~~~~~~~~~~~ 890 (1051)
..+.+...+.|.++|++||+.+.+ .++++...+..+.+
T Consensus 174 ~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 174 AEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp HHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEE
T ss_conf 999999985699899991899999986999999989989
No 10
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=160.65 Aligned_cols=151 Identities=14% Similarity=0.109 Sum_probs=111.1
Q ss_pred CCCEEEEEEEE----CEEEEEECCCCCCCCHHHHHHHHHHHH------------------HHCCEEECCCCCCHHH----
Q ss_conf 99536656760----308999907999822499879756773------------------1025011478778115----
Q 001570 740 EGSAVHNTVDM----QSLFLLTGPNGGGKSSLLRSICAASLL------------------GICGLMVPAESASIPY---- 793 (1051)
Q Consensus 740 ~~~~v~ndi~l----g~i~~ItGpNgsGKSTlLk~I~~~~~l------------------a~~G~~Vpa~~a~i~~---- 793 (1051)
++..++++++| |++++|+||||||||||||+|+|+... .....||||..+.++.
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (362)
T 2it1_A 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVY 93 (362)
T ss_dssp SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHH
T ss_pred CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHH
T ss_conf 99788975589997998999999999359999999966998885099999999986997578489994676457898799
Q ss_pred --------------------HHHHHHHCCCCCCCCCCCCCHHHHHHH-HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHH
Q ss_conf --------------------999998569899945873430699899-99999976999399981899999979899999
Q 001570 794 --------------------FDAIMLHMKSYDSPADGKSSFQVEMSE-IRSIVTATTSRSLVLIDEICRGTETAKGTCIA 852 (1051)
Q Consensus 794 --------------------~d~i~~~i~~~d~~~~~~Stf~~em~~-i~~il~~a~~~sLiLlDEp~~Gtd~~~g~~i~ 852 (1051)
++.++..++..+...+..+++|++++| ++.+.+.+.+|+++|||||++|+|+.....+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 173 (362)
T 2it1_A 94 KNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVR 173 (362)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 99999987648987999999999998859904760893038999999999999997299999998954368999999999
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHH-HCCCCCCCCCCCEE
Q ss_conf 999999980795999963582554-07632212223224
Q 001570 853 GSIIETLDNIGCLGIVSTHLHGIF-SLPLKIKNAAYKAM 890 (1051)
Q Consensus 853 ~~ile~l~~~g~~vi~aTH~~el~-~l~~~~~~~~~~~~ 890 (1051)
..+.+...+.|.++|++||+.+.+ .++++...+..+.+
T Consensus 174 ~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 174 AELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp HHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEE
T ss_conf 999999975798999988888999986999999989989
Done!