Query 001571
Match_columns 1051
No_of_seqs 176 out of 454
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 04:06:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1410 Nuclear transport rece 100.0 2E-206 5E-211 1657.8 93.2 1041 1-1049 1-1064(1082)
2 COG5101 CRM1 Importin beta-rel 100.0 4.8E-66 1E-70 559.3 66.6 893 3-1049 12-1029(1053)
3 KOG4541 Nuclear transport rece 100.0 1.5E-52 3.2E-57 449.1 40.0 628 386-1050 35-743 (748)
4 KOG2020 Nuclear transport rece 100.0 1.1E-39 2.5E-44 392.2 60.8 789 4-930 10-891 (1041)
5 KOG2022 Nuclear transport rece 99.9 1.6E-15 3.5E-20 174.3 69.7 905 3-1050 5-976 (982)
6 KOG2021 Nuclear mRNA export fa 99.8 2.4E-14 5.3E-19 161.4 55.9 261 4-293 2-275 (980)
7 PF08767 CRM1_C: CRM1 C termin 99.8 2E-17 4.4E-22 182.4 25.5 250 754-1049 45-315 (319)
8 KOG2023 Nuclear transport rece 99.3 2E-07 4.4E-12 105.2 48.3 559 5-720 10-595 (885)
9 KOG2171 Karyopherin (importin) 99.3 5.2E-07 1.1E-11 109.1 52.4 149 3-157 2-152 (1075)
10 PF08389 Xpo1: Exportin 1-like 99.0 4.3E-09 9.4E-14 103.9 12.5 147 96-269 1-148 (148)
11 KOG1992 Nuclear export recepto 98.8 0.00077 1.7E-08 79.1 53.9 177 6-190 3-193 (960)
12 KOG2081 Nuclear transport regu 98.8 6.2E-07 1.3E-11 100.8 23.0 309 24-377 2-322 (559)
13 KOG1991 Nuclear transport rece 98.8 0.0017 3.7E-08 78.0 72.5 162 18-192 16-191 (1010)
14 PF03810 IBN_N: Importin-beta 98.1 9.1E-06 2E-10 70.1 8.0 64 26-89 1-76 (77)
15 KOG1241 Karyopherin (importin) 98.1 0.041 9E-07 64.7 48.9 218 17-275 12-247 (859)
16 KOG1993 Nuclear transport rece 96.8 2 4.3E-05 51.5 50.1 160 18-191 12-183 (978)
17 COG5657 CSE1 CAS/CSE protein i 96.5 0.094 2E-06 63.2 17.5 147 1-155 1-155 (947)
18 KOG2274 Predicted importin 9 [ 96.0 6 0.00013 48.4 49.6 131 18-154 16-159 (1005)
19 KOG4541 Nuclear transport rece 93.3 19 0.00042 41.6 26.6 23 533-556 356-378 (748)
20 COG5656 SXM1 Importin, protein 89.4 58 0.0013 39.5 56.2 133 19-154 16-157 (970)
21 COG5215 KAP95 Karyopherin (imp 80.4 1.3E+02 0.0028 35.5 49.8 107 17-130 16-140 (858)
22 KOG2023 Nuclear transport rece 74.7 39 0.00084 40.3 12.5 273 741-1037 564-867 (885)
23 KOG1241 Karyopherin (importin) 73.7 2.3E+02 0.0049 34.8 26.7 261 724-1003 249-544 (859)
24 PF03378 CAS_CSE1: CAS/CSE pro 62.4 3.1E+02 0.0067 32.1 19.7 111 646-771 82-194 (435)
25 PF03224 V-ATPase_H_N: V-ATPas 61.9 1.6E+02 0.0035 32.7 14.3 172 28-213 93-269 (312)
26 PF12460 MMS19_C: RNAPII trans 57.8 3.6E+02 0.0078 31.4 17.1 209 48-298 199-412 (415)
27 PF01602 Adaptin_N: Adaptin N 43.8 2.2E+02 0.0048 34.2 12.7 122 17-150 53-179 (526)
28 PF12726 SEN1_N: SEN1 N termin 40.7 8.6E+02 0.019 30.7 23.0 159 868-1038 417-589 (727)
29 PF13646 HEAT_2: HEAT repeats; 40.5 98 0.0021 26.5 6.7 87 7-107 1-87 (88)
30 PF12348 CLASP_N: CLASP N term 38.3 3.8E+02 0.0083 27.9 12.0 105 897-1024 52-161 (228)
31 KOG0889 Histone acetyltransfer 37.2 1.1E+03 0.024 34.9 18.0 116 804-932 667-801 (3550)
32 PF14222 MOR2-PAG1_N: Cell mor 36.6 4.5E+02 0.0098 31.9 13.3 125 896-1022 100-248 (552)
33 PF00790 VHS: VHS domain; Int 33.9 3.5E+02 0.0075 26.0 9.8 59 50-108 53-114 (140)
34 PLN03076 ARF guanine nucleotid 33.3 1.6E+03 0.034 31.6 22.7 279 40-351 1131-1471(1780)
35 KOG4646 Uncharacterized conser 32.9 93 0.002 29.6 5.1 42 4-45 15-56 (173)
36 PTZ00429 beta-adaptin; Provisi 32.5 6.7E+02 0.015 31.6 14.2 126 17-152 79-208 (746)
37 PF12922 Cnd1_N: non-SMC mitot 31.7 83 0.0018 31.5 5.3 68 261-328 97-165 (171)
38 PF13646 HEAT_2: HEAT repeats; 30.6 1.8E+02 0.004 24.7 6.8 55 7-63 33-87 (88)
39 PF08623 TIP120: TATA-binding 30.6 1.2E+02 0.0026 30.2 6.0 55 868-929 42-96 (169)
40 PF13513 HEAT_EZ: HEAT-like re 29.4 1.3E+02 0.0027 23.3 4.9 55 867-925 1-55 (55)
41 PF08506 Cse1: Cse1; InterPro 29.0 9.2E+02 0.02 27.6 21.4 166 442-636 23-192 (370)
42 PF02985 HEAT: HEAT repeat; I 28.3 87 0.0019 21.1 3.3 30 899-928 1-30 (31)
43 KOG1020 Sister chromatid cohes 24.7 1.9E+03 0.041 29.9 31.7 207 580-830 812-1037(1692)
44 COG5656 SXM1 Importin, protein 24.1 1.5E+03 0.032 28.3 17.6 61 73-134 450-510 (970)
45 PF01603 B56: Protein phosphat 23.3 1.2E+03 0.026 27.0 15.8 44 961-1005 337-386 (409)
46 cd00020 ARM Armadillo/beta-cat 23.2 5.2E+02 0.011 23.0 8.9 109 38-151 7-119 (120)
47 PF12333 Ipi1_N: Rix1 complex 21.3 1.5E+02 0.0032 26.9 4.3 35 895-929 8-42 (102)
48 PF14500 MMS19_N: Dos2-interac 20.9 1.1E+03 0.023 25.5 18.6 100 50-155 10-114 (262)
49 PF10521 DUF2454: Protein of u 20.2 9.9E+02 0.022 26.0 11.5 163 109-305 106-278 (282)
No 1
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-206 Score=1657.76 Aligned_cols=1041 Identities=50% Similarity=0.844 Sum_probs=997.4
Q ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh-ccCCHHHHHH
Q 001571 1 MESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE-HSLALQLRLD 79 (1051)
Q Consensus 1 ~~~l~~lE~~~~~ly~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~-~~l~~~~r~~ 79 (1051)
|+++++||.+|+.+|+++|+.+|.+||+.|.+|.++|+++.+|+.+|++++.||.++.|+++|.+.+.+ ..+|.++|.+
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~qrld 80 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQRLD 80 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999 8899999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCCh----hhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc
Q 001571 80 IRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDD----RFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMN 155 (1051)
Q Consensus 80 lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~w~~~~----~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~ 155 (1051)
||+|+++|+.+++|++++||...+++++|+++|.||+|.. ++|+.+.++.+|++.++.+|+++|+.||+.+++||+
T Consensus 81 ir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN 160 (1082)
T KOG1410|consen 81 IRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMN 160 (1082)
T ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999853 789999999999987789999999999999999999
Q ss_pred CCCCCcchHHhHhhhhhcchhchHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHhHhccccccccCCCCCcccccc
Q 001571 156 QPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLK-----SDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGT 230 (1051)
Q Consensus 156 ~~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~-----~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~ 230 (1051)
+.+.+.+..+|||...+|||+.|.+||.+++.+|+... ++.+..+..++|++..+||+|||+|++.||++||..+
T Consensus 161 ~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~ct 240 (1082)
T KOG1410|consen 161 QADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSEDLCT 240 (1082)
T ss_pred CCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccccccccc
Confidence 99999999999999999999999999999999999875 2234679999999999999999999999999999999
Q ss_pred ccCCCCccccccCccHHHHHHHHHhhcCCcchHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHhhcCcCCCCc
Q 001571 231 VQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLADH 310 (1051)
Q Consensus 231 ~~~p~~W~~~l~~~~~l~llf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~~ 310 (1051)
||+|.+||..+.|++++++||++|...+|+++..++.||+|+||+|+++|++ .+|.+|++++++|+..|+++++|++|+
T Consensus 241 VQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~-aeRa~yl~~Lv~Gvk~il~np~~LsD~ 319 (1082)
T KOG1410|consen 241 VQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNG-AERAKYLQHLVEGVKRILENPQGLSDP 319 (1082)
T ss_pred eecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhCCcCCCCc
Confidence 9999999999999999999999999899999999999999999999999966 899999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhhhcchhhhhcccChHHHHHHHHHHHHHhhhhhccccCcHHHHHHHHHHhhcCcCcccCCCcchhhh
Q 001571 311 DNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKGDAPSLLDE 390 (1051)
Q Consensus 311 ~~~~~~~~~l~rl~~~~~l~~l~~~~~~~~~l~~l~~ft~~~l~~~~~~~~s~~~lL~~W~~lv~~~~~~~~~~~~~l~~ 390 (1051)
++||+|||++.|+++||++.||+++++|++||+.+|.||+.+++.|.|+++|.+|||.+|.+||.++||++++.|+.++.
T Consensus 320 ~nyHeFCRllaRlktNYQL~ELv~v~~Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSVPyvk~~~phlLd~ 399 (1082)
T KOG1410|consen 320 ANYHEFCRLLARLKTNYQLGELVKVECYPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASVPYVKNTEPHLLDT 399 (1082)
T ss_pred chHHHHHHHHHHHHhhhhhHhhhccCCcHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCCcccCCChHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhccccccccCCCCCCCCCCcHHHHHHHHhhhhhhhccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCc
Q 001571 391 FVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELLQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDK 470 (1051)
Q Consensus 391 ~~~~I~~~yi~~~l~~~~~~~~~e~~e~~~~d~~~~~~~le~i~~l~r~~~~~t~~~L~~~l~~~~~~~~~~~~~~~~~~ 470 (1051)
|+|+|.++||.||++.++.++.|+ .|+|+||.+...+++|.+++++|+.|+.|+.+|.++|++..+.|++....+..++
T Consensus 400 y~PeIt~afi~SRl~sV~~ivrd~-~d~PLdd~~~~~q~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~ 478 (1082)
T KOG1410|consen 400 YCPEITKAFITSRLQSVEIIVRDG-LDDPLDDTGAVQQQLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSAND 478 (1082)
T ss_pred hcHHHHHHHHHHHhhhhheecccC-CCCcchhhHHHHHHHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCc
Confidence 999999999999999998777766 6899999999999999999999999999999999999999999998865544466
Q ss_pred chhhhHHHHHHHHHHHHHHHhhcccccCCCcccccccchHHHHHHHHHhhhccccccccccccccHHHHHHHHHHHHHHh
Q 001571 471 SEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHF 550 (1051)
Q Consensus 471 ~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~l~~~~~~~~~~~~~s~~~l~~a~l~fl~~~ 550 (1051)
..+.+.|++|.|+|+|+|++++|+ .+.+++++++++||+|+++|+++++++|... +..+++|++.|++||+.+|
T Consensus 479 ~d~ai~EgrL~Wlv~lvgtvV~gk-~t~~Std~~d~mDgEL~arvlql~nlmdsr~-----~~~~n~rle~ail~f~eqF 552 (1082)
T KOG1410|consen 479 ADIAIQEGRLVWLVYLVGTVVGGK-TTATSTDEHDAMDGELSARVLQLVNLMDSRL-----PLKGNERLELAILHFLEQF 552 (1082)
T ss_pred hhHHHHhhhhhhhHHHhHHHhcce-ecccccchhhhhhhHHHHHHHHHHHhhhccc-----chhhhHHHHHHHHHHHHHH
Confidence 677789999999999999999999 5556789999999999999999999998755 5566799999999999999
Q ss_pred HHHHhccCCccchHHHHHHHHHhCCCChHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhcccchhhHHhcchhHH
Q 001571 551 RKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIK 630 (1051)
Q Consensus 551 ~~~yl~~~~~~~~k~~~~l~~~~g~~d~~~~~~~~l~~i~~~L~~~~~~~~v~~~~~~Ll~~l~~~~~~~~~l~~~~~~~ 630 (1051)
+++|+|++.++++|+|.+++|.+|+.|+..++++++.||.+||++|+..++|+..+++||.+++.|++.+|+++++|.|+
T Consensus 553 Rk~YvgDQ~~rsSkvY~rl~e~Lgi~de~~~L~viv~KI~TNLK~w~~~e~vi~~tLslf~dLs~GY~~~kkL~kl~~Vq 632 (1082)
T KOG1410|consen 553 RKAYVGDQIQRSSKVYARLSEVLGITDESDVLGVIVGKILTNLKYWGRNEPVISLTLSLFNDLSLGYSAVKKLVKLDAVQ 632 (1082)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHhhhHHHHHHHhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCcccc---cccchhHHHHHHHHHHHhcc--CChHHHHHhhHHHHHHHHHhh-cCCCcccccHHHHHHH
Q 001571 631 FIVANHTREHFPFLEEY---RCSRSRTTFYYTIGWLIFME--ESPVKFKSSMDPLLQVFISLE-STPDSMFRTDAVKCAL 704 (1051)
Q Consensus 631 ~l~~~~~~~~~~~l~~~---~~~~~r~~~y~al~~~~~~~--~~~~~~~~~l~p~~~~~~~l~-~~~~~~~~~~~~~~~l 704 (1051)
++++||++++|||++.. ...|+||+||.|+|+++++| +.+..|++||.|+++.|..+. .-+.+.|+.+++|..+
T Consensus 633 fmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~~d~sede~~fe~fm~PLt~~fe~v~~~~~nn~f~ee~vK~~l 712 (1082)
T KOG1410|consen 633 FMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLMVDLSEDEDMFERFMLPLTDAFEGVLQVFQNNCFEEEQVKRIL 712 (1082)
T ss_pred hHhcccchhhCcccccCccchhhhhHhHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 99999999999999866 66899999999999999887 447799999999999999774 2222569999999999
Q ss_pred HHHHHHHhhHHhhhccchhHHHHHHHHhhcchHHHHHHhhhhcCCCchHHHHHHHHHHHHhccccceeccCCCcchhhhH
Q 001571 705 IGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLF 784 (1051)
Q Consensus 705 ~~ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~l~~~y~~~~~v~~~iLkl~~e~~~n~~~ri~f~~~s~~~~~lf 784 (1051)
+|++||+|||+.|.+++.+|.++|+|+||.++|++...++.|.++|++++|||||++|+++||+||+.|+.+||||++||
T Consensus 713 iGL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~~Ve~W~~~p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLLF 792 (1082)
T KOG1410|consen 713 IGLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQRAVEKWYGCPDVTTPILKLMAELVQNRSQRLKFDVSSPNGILLF 792 (1082)
T ss_pred HHHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHHhhhHhheecccCCCceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC--CchhhHhhhhhhHHHHHHHHHHhhcCCccccccccccCCCcHHHHHHHHHHhhhccChhh
Q 001571 785 REVSKLIVAYGSRVLSLP--NAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLAD 862 (1051)
Q Consensus 785 ~~~~~~~~~y~~~~~~~~--~~~~~~~~~~k~l~~~l~il~~~l~~~~vnfg~~~~y~D~~~~~~l~~~l~~~l~ip~~d 862 (1051)
|+++|++..||.+++++| ++...|+++||+|.+|+.+|.++++|+|||||||++|||+++.+++..+++|+++||..|
T Consensus 793 rEtSKmv~~YG~riL~Lp~vskdqiY~~kyKgI~v~~siLk~AL~GnYv~FGVFrLYGD~~l~daL~~fvKm~lsIp~sD 872 (1082)
T KOG1410|consen 793 RETSKMVSIYGNRILQLPEVSKDQIYAEKYKGISVCFSILKNALSGNYVNFGVFRLYGDSALDDALQTFVKMLLSIPHSD 872 (1082)
T ss_pred hhhhHHHHHHhhHhhcccCcchhhhHHHHhcCceehHHHHHHHhhcCccccceeeeeCchHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999998 455689999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHhhHHHHHHHHHHHHhhhHHhhhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHHhhccCCCC---
Q 001571 863 ILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAP--- 939 (1051)
Q Consensus 863 l~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~~l~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~--- 939 (1051)
+++|||+.++||.|+|.+++.|+.++.+|+++.|..++.||..|+++.|+.|++.||.++|++++|+|+++.++..|
T Consensus 873 ~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ll~Si~sGLt~lDt~v~ssccsslD~i~tYlfk~itr~~~p~~~ 952 (1082)
T KOG1410|consen 873 LLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMYLLRSISSGLTSLDTIVSSSCCSSLDTIVTYLFKRITRSTKPTRK 952 (1082)
T ss_pred HHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHHHHHHHHhccchhhHHHHhHHHHHHHHHHHHHHHHHhccCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877665
Q ss_pred --CChHHHHHHHHHhhCCCcHHHHHHHHHHHHhccCCCchhhchhhhHHHHhcCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 001571 940 --TSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSLSRPMLSLILISEQVFSDLKAQILTSQPVDQHQRLSVC 1017 (1051)
Q Consensus 940 --~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~s~~L~~li~~~~~~f~~l~~~li~~q~~~~~~~l~~a 1017 (1051)
.+|.++.+..++++||+++++||+.++++++|+||++||++||||++||++++++|..++.+|+++||+++|+++..|
T Consensus 953 ~~~tpa~~r~l~~i~q~Pdil~qml~tl~~ii~Fedc~nQWSlSRPlLgLILi~E~~fSdlk~~l~ssQp~dkqq~l~~c 1032 (1082)
T KOG1410|consen 953 VGMTPAGDRFLHAIQQHPDILQQMLSTLINIIMFEDCRNQWSLSRPLLGLILINEKYFSDLKASLTSSQPYDKQQDLDMC 1032 (1082)
T ss_pred CCCChhHHHHHHHHHhChHHHHHHHHHHHHHHhHHhhcccccccchhhHHHhhhHHHHHHHHHHHhcCCCcchhHHHHHH
Confidence 458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccChhhHHHHHHHHHHHHHHhh
Q 001571 1018 FDKLMADVARSLDSKNRDKFTQNLTVFRHEFR 1049 (1051)
Q Consensus 1018 f~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr 1049 (1051)
|.+||+||+.+++.||||+||+|+..||++|+
T Consensus 1033 F~~LM~~ve~nL~~KNrD~FTQNLt~FRrdv~ 1064 (1082)
T KOG1410|consen 1033 FTNLMEGVERNLTVKNRDRFTQNLTRFRRDVA 1064 (1082)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997
No 2
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=4.8e-66 Score=559.28 Aligned_cols=893 Identities=15% Similarity=0.191 Sum_probs=621.1
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--ccCCHHHHHHH
Q 001571 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1051)
Q Consensus 3 ~l~~lE~~~~~ly~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~r~~l 80 (1051)
+++.||++++.+|.|.+ .++++|+++|..|+..||+|.++.+||++|+.|.++|.|++.|.++|++ +.+|.+.|.+|
T Consensus 12 diallDkVVttfyqg~g-~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWkllp~~~r~Gi 90 (1053)
T COG5101 12 DIALLDKVVTTFYQGDG-RKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLLPEGMRQGI 90 (1053)
T ss_pred CHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHH
Confidence 57889999999998876 7789999999999999999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHhcCCCc-----hHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccC---chhHHHHHHHHHHHHH
Q 001571 81 RNYLINYLAKRGPEL-----QSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQAT---SDHYAIGLKILNQLVS 152 (1051)
Q Consensus 81 r~~ll~~l~~~~~~~-----~~~v~~~l~~~la~i~K~~w~~~~~~~~~i~~i~~~l~~~~---~~~~~~gl~lL~~lv~ 152 (1051)
|+|+.+.+++++.+. .+++.+++..+++.|+|++||.+|| +||+++.+..+ .+ +++.++.|++|++.|+
T Consensus 91 Rnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP--~FIpeli~~S~-~s~~vCeNnmivLklLsEEvF 167 (1053)
T COG5101 91 RNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWP--TFIPELINVSQ-ISMEVCENNMIVLKLLSEEVF 167 (1053)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--hhhHHHHhhcc-chHHHHhccHHHHHHhHHHHH
Confidence 999999999987543 3899999999999999999999999 99999987653 23 4688999999999999
Q ss_pred hccCCCCCcchHHhHhhhhhcchhchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcccccccc
Q 001571 153 EMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQ 232 (1051)
Q Consensus 153 Ef~~~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~ 232 (1051)
+||..+++.-..+|. +.++.-+ ++.||++|.++|+...+ +++++++|+.+..+|.|.+.++. +|
T Consensus 168 dfSaeqmTq~k~~~L--kNqm~~E-F~qIF~lc~qiLE~~~~---~SLi~ATLesllrfl~wiPl~yI-fe--------- 231 (1053)
T COG5101 168 DFSAEQMTQVKKRLL--KNQMKIE-FPQIFGLCKQILEYSRD---ESLIEATLESLLRFLEWIPLDYI-FE--------- 231 (1053)
T ss_pred hccHHHHHHHHHHHH--HHHHhhh-HHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHhhCchhHH-HH---------
Confidence 999887654444444 4456554 99999999999998765 68999999999999999999885 44
Q ss_pred CCCCccccccCccHHHHHHHHHhhcCCcchHHHHHHHHHHhcccc-cCCCChHHH--HHHHHHHHHHHH-HHhhcC----
Q 001571 233 IPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRR-SLFTNDAAR--SKFLAHLMTGTK-EILQTG---- 304 (1051)
Q Consensus 233 ~p~~W~~~l~~~~~l~llf~~y~~~~~~l~~~~l~cL~~l~sl~~-~~f~~~~~~--~~~l~~~l~~~~-~il~~~---- 304 (1051)
++.++++.+.+. ..|+.+..+++||++++++.+ +..+.+.+| .-+++.++.... ..++..
T Consensus 232 -----------TnIieLv~~~f~-s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~ 299 (1053)
T COG5101 232 -----------TNIIELVLEHFN-SMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIY 299 (1053)
T ss_pred -----------HHHHHHHHHHhc-cCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHH
Confidence 568888888774 668899999999999999974 333322222 234444443332 111111
Q ss_pred -----cCCCCchhHHHHHHHHhhhhhhcchhhhhcccChHHHHHHHHHHHHHhhhhhccc-cCcHHHHHHHHHHhhcCcC
Q 001571 305 -----QGLADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWA-SSSVYYLLGLWSRLVTSVP 378 (1051)
Q Consensus 305 -----~~l~~~~~~~~~~~~l~rl~~~~~l~~l~~~~~~~~~l~~l~~ft~~~l~~~~~~-~~s~~~lL~~W~~lv~~~~ 378 (1051)
..-.+....+.++.+++.+.+.| ++.|..-+.-+..++. .++. ++..... .|-|..+|++|+++|.++
T Consensus 300 e~Y~~~~~neq~Fvq~LA~fL~s~~~~~-~~lLE~~e~~e~llna-h~YL---iqiSrInereiFkt~leyW~klVadL- 373 (1053)
T COG5101 300 EVYGGMDKNEQIFVQKLAQFLSSLYEVY-ISLLEAREMAENLLNA-HGYL---IQISRINEREIFKTALEYWNKLVADL- 373 (1053)
T ss_pred HHHcccChhHHHHHHHHHHHHHHHHHHH-HHHhcChhHHHHHHHH-HHHh---hhhhhccHHHHHHHHHHHHHHHHHHH-
Confidence 11122334455677777776666 3333322211111111 1221 2333332 467889999999999875
Q ss_pred ccc---------CC-------------Cc----------chhhhhHHHHHHHHHhhhccccccc--cCCCCCCC------
Q 001571 379 YLK---------GD-------------AP----------SLLDEFVPKITEGFITSRFNSVQAG--FPDDLSDN------ 418 (1051)
Q Consensus 379 ~~~---------~~-------------~~----------~~l~~~~~~I~~~yi~~~l~~~~~~--~~~e~~e~------ 418 (1051)
|.+ ++ .| +.......++.-. +..+|..|+++ +++|++|-
T Consensus 374 y~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsqLrlv-lienMvrPEEVliVendegEivRefvk 452 (1053)
T COG5101 374 YSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQLRLV-LIENMVRPEEVLIVENDEGEIVREFVK 452 (1053)
T ss_pred HHHHHhCcccccCcchhccccchhccCCcchhcccchHHHHHHHHHHHHHHH-HHHcCCCcceEEEEECCCcHHHHHHhc
Confidence 321 00 01 0111223455555 44556677776 33443332
Q ss_pred CCCcHHHHHHHHhhhhhhhccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHH-HHHHHhhccccc
Q 001571 419 PLDNVELLQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVH-IIAAIVKIKQCT 497 (1051)
Q Consensus 419 ~~~d~~~~~~~le~i~~l~r~~~~~t~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~-i~g~~l~~~~~~ 497 (1051)
+.|-.+.++.+.+++.+|+++...+|..++...+... +.+.+|+|+++| +|||+|+ |+|++-.
T Consensus 453 etDtI~lYksmRevLvyLthL~v~Dte~~mi~Klarq-------~dg~EWsw~nlN----tLcWAIGSISGamsE----- 516 (1053)
T COG5101 453 ETDTIELYKSMREVLVYLTHLIVDDTEKYMIGKLARQ-------LDGKEWSWNNLN----TLCWAIGSISGAMSE----- 516 (1053)
T ss_pred cccHhHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHH-------hcCCccchhhHh----HHHHHHhcccchhhh-----
Confidence 2333456789999999999999999999999988876 345677999888 9999996 6666543
Q ss_pred CCCcccccccchHHHHHHHHHhhhcc-------ccccccc--cccccHHHHHHHHHHHHHHhHHHHhccCCccchHHHHH
Q 001571 498 GCSLESQEVLDAELSARVLQLINVTD-------SGLHSQR--YCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYAR 568 (1051)
Q Consensus 498 ~~~~~~~~~~d~~L~~~v~~l~~l~~-------~~~~~~~--~~~~s~~~l~~a~l~fl~~~~~~yl~~~~~~~~k~~~~ 568 (1051)
..++ .+++..+..|+.+|. ++.-+++ |.+|++||+.+++|.|++ |.+ .|+|++
T Consensus 517 -----~~Ek--rF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw~FLk----TVv-------~KLFEF 578 (1053)
T COG5101 517 -----VNEK--RFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLK----TVV-------KKLFEF 578 (1053)
T ss_pred -----HHHH--HHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHHHHHHH----HHH-------HHHHHH
Confidence 3354 467778777777663 4444453 889999999999999998 776 789999
Q ss_pred HHHHh-CCCChHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhcccchhhHHhcchhHHHHHHhcccCCCCCcccc
Q 001571 569 LSELL-GLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEY 647 (1051)
Q Consensus 569 l~~~~-g~~d~~~~~~~~l~~i~~~L~~~~~~~~v~~~~~~Ll~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~l~~~ 647 (1051)
|+|.+ |++| |+||+|++++..|-.+|-.+ ..| ...|++++++++....+-++- |
T Consensus 579 MhE~HEGvqD--MACDtFiKIvqKC~~hFv~Q--------------q~g-------esEpFI~~Iirnl~ktT~dL~--p 633 (1053)
T COG5101 579 MHEDHEGVQD--MACDTFIKIVQKCPVHFVTQ--------------QEG-------ESEPFIVYIIRNLPKTTGDLE--P 633 (1053)
T ss_pred HhhhhhhHHh--hhHHHHHHHHHhCcHHHhhc--------------CCC-------CCCcHHHHHHHhhhhhcccCC--h
Confidence 99998 9999 89999998877765554311 111 346789999999866554432 3
Q ss_pred cccchhHHHHHHHHHHHhccC----ChHHHHHhhHHHHHHHHHhh----cCCCcccccHHHHHHHHHHHHHHhhHHhhhc
Q 001571 648 RCSRSRTTFYYTIGWLIFMEE----SPVKFKSSMDPLLQVFISLE----STPDSMFRTDAVKCALIGLMRDLRGIAMATN 719 (1051)
Q Consensus 648 ~~~~~r~~~y~al~~~~~~~~----~~~~~~~~l~p~~~~~~~l~----~~~~~~~~~~~~~~~l~~ll~~l~Gi~~a~~ 719 (1051)
.+.++||+|+|.++...+ +....-.+|+-++..|..+. .++ ..+.+++..+...+.+......|.+..
T Consensus 634 ---qQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~-~~L~d~~tvki~an~~ktnVa~ctslg 709 (1053)
T COG5101 634 ---QQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENI-NRLSDTMTVKIDANKMKTNVAKCTSLG 709 (1053)
T ss_pred ---HHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhh-hhhcchhHHHHHHHHHHHHHHHHhhcc
Confidence 355899999999997654 24468889999999999984 233 455666666666666666665554443
Q ss_pred cchhHHHHHHHHhhcchHHHHHHhhhhcCCCchHHHHHHHHHHHHhccccceeccCCCcchh-hhHHHHHHHHHHHHHhh
Q 001571 720 SRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGI-LLFREVSKLIVAYGSRV 798 (1051)
Q Consensus 720 ~~~~~~~lf~~i~p~~~~~~~~l~~~y~~~~~v~~~iLkl~~e~~~n~~~ri~f~~~s~~~~-~lf~~~~~~~~~y~~~~ 798 (1051)
. .+||..-..+..++..|..-+..+ ++.+... +-|+-.....+|. .+.+++.+++.+|.++.
T Consensus 710 ~---------~fyPq~~~~y~~ml~ly~avs~~I-------s~~vaae-g~iatktp~vrglrtiKkEIlkLv~tyIska 772 (1053)
T COG5101 710 Y---------RFYPQTCSSYCIMLFLYFAVSFDI-------SNSVAAE-GLIATKTPAVRGLRTIKKEILKLVATYISKA 772 (1053)
T ss_pred c---------ccchHHHHHHHHHHHHHHHHHHHH-------HHHHHhc-ccccccCccccchHHHHHHHHHHHHHHHhhh
Confidence 2 355654444444444443222211 1222111 1122222344454 56677777777775321
Q ss_pred -----------------------cCCCCchhhHhhhhhhHHHHHHHHHHhhcCCccccccccccCCCcHHHHHHHHHHhh
Q 001571 799 -----------------------LSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMT 855 (1051)
Q Consensus 799 -----------------------~~~~~~~~~~~~~~k~l~~~l~il~~~l~~~~vnfg~~~~y~D~~~~~~l~~~l~~~ 855 (1051)
-++|..+ +++.+.....+.+-+.+.+. ...+-.+..+|.|+
T Consensus 773 ~dl~~V~n~lv~~l~eaVl~DY~nNvPdar--daevLnl~ttiV~~v~~~i~--------------~~~~l~l~svf~ct 836 (1053)
T COG5101 773 RDLKFVQNDLVNMLCEAVLFDYKNNVPDAR--DAEVLNLGTTIVRNVESVIY--------------LQRELFLISVFICT 836 (1053)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCccc--cHHHHHHHHHHHHHHHHHhh--------------hhhHHHHHHHHhhh
Confidence 1455555 55666655555555444442 13566888999999
Q ss_pred hccChhhHhhhHhhHHHHHHHHHHHHhhhHHhhhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHHhhcc
Q 001571 856 LSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITM 935 (1051)
Q Consensus 856 l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~~l~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~ 935 (1051)
+.|...|+-+||+++++||.|++.+...++..+.++|++.|+.++++|.|+++|..++|+..++.++..+.+.+.. .
T Consensus 837 l~mi~kdf~EypEhr~~f~~Ll~~inl~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~---m 913 (1053)
T COG5101 837 LIMIVKDFDEYPEHRKNFLLLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHE---M 913 (1053)
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHH---h
Confidence 9999999999999999999999999999999999999999999999999999999999999999988888877753 2
Q ss_pred CCCCCChHHHHHHHHHhhCCCcHHHHHHHHHHHHhccCCCchhhchhhhHHH-----------------HhcCHHHHHHH
Q 001571 936 GEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSLSRPMLSL-----------------ILISEQVFSDL 998 (1051)
Q Consensus 936 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~s~~L~~l-----------------i~~~~~~f~~l 998 (1051)
| .|....+ +.+.+...+..++.++...|++..++--..|++. |--+.-...++
T Consensus 914 g----~~~~n~F------~~~yy~s~l~~il~vltDsDhKsgF~~Q~Llla~li~lv~dnkisVPlyd~~~~n~~~lsey 983 (1053)
T COG5101 914 G----VPFINQF------YAQYYMSTLENILGVLTDSDHKSGFDQQCLLLAFLIRLVKDNKISVPLYDGINPNITILSEY 983 (1053)
T ss_pred C----CchHHHH------HHHHHHHHHHHHHeeeeccchhccchHHHHHHHHHHHHHhccccccccccCCCCchhhHHHH
Confidence 2 2444333 2345777888888888899998876444444432 22233345555
Q ss_pred HHHHHh-cCChhhHHHHHHHHHHHHhhhhcccChhhHHHHHHHHHHHHHHhh
Q 001571 999 KAQILT-SQPVDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFR 1049 (1051)
Q Consensus 999 ~~~li~-~q~~~~~~~l~~af~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr 1049 (1051)
...+.. +.|.--++.+..-...|.+- +. .-.-|...+..|+..|.
T Consensus 984 i~~l~~~sfp~it~e~v~~f~~~l~~~-~~-----d~~ifk~~~~df~vkv~ 1029 (1053)
T COG5101 984 IVGLFVKSFPNITQESVKIFSVGLFEL-CG-----DDEIFKEHVEDFRVKVY 1029 (1053)
T ss_pred HHHHHHhhcCcccHHHHHHHHHHHHHH-hC-----cHHHHHHHHHHHhhhee
Confidence 544433 34533344433333333220 11 12467777777776654
No 3
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-52 Score=449.13 Aligned_cols=628 Identities=15% Similarity=0.144 Sum_probs=481.3
Q ss_pred chhhhhHHHHHHHHHhhhcccccc--------c-cCCCCC----CCCCCcHHHHHHHHhhhhhhhccchhhHHHHHHHhH
Q 001571 386 SLLDEFVPKITEGFITSRFNSVQA--------G-FPDDLS----DNPLDNVELLQDQLDCFPYLCRFQYENSGLYIINTM 452 (1051)
Q Consensus 386 ~~l~~~~~~I~~~yi~~~l~~~~~--------~-~~~e~~----e~~~~d~~~~~~~le~i~~l~r~~~~~t~~~L~~~l 452 (1051)
..+..+..+|++.|+++|+.++.+ + .++|++ ++.+||.+...+++...+..+|...+.+.+.. .++
T Consensus 35 Gf~~d~~V~v~n~~lq~hl~~~~ga~i~~an~V~~R~eee~~~l~~~edd~D~s~D~~~~~~~~gr~gae~c~~~~-~ll 113 (748)
T KOG4541|consen 35 GFWLDCPVAVSNRKLQVHLCSLAGAEIFPANNVQMRDEEELLLLTGVEDDIDPSPDVISKEIEEGRSGAEMCDGCR-ALL 113 (748)
T ss_pred hhHhhCcHHHHHHHHHHHhcccchhhcccccchhcccHHHHHhhcCCCccCCcchhHHHHHHhcCchHHHHHHHHH-HHH
Confidence 556667889999999999987643 1 123211 22456666677888888899999988887776 666
Q ss_pred HHHHHHHHH----Hhh--cCCCC----cchhhhHHHHHHHHHHHHHHHhhcccccC------------------------
Q 001571 453 EPILQSYTE----RAR--MQTGD----KSEISVIEAKLAWIVHIIAAIVKIKQCTG------------------------ 498 (1051)
Q Consensus 453 ~~~~~~~~~----~~~--~~~~~----~~~l~~~~e~L~Wli~i~g~~l~~~~~~~------------------------ 498 (1051)
+....++.. ..+ .+.++ ...+.-+.|+.||++++.|.-+.|+.-.+
T Consensus 114 e~~~t~lh~~~~~~~~~la~~GS~t~~s~~l~~~~eDqHWLmLVl~~~~~dee~~~~~~~~~~~~~yt~~htsk~D~s~~ 193 (748)
T KOG4541|consen 114 EIGTTTLHVVFDQLLRSLAPFGSLTLLSMLLGEVVEDQHWLMLVLMANSTDEETWSYEARDILLDTYTTLHTSKMDGSGG 193 (748)
T ss_pred HhcccccHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccccCCccCCCchHhhhhhhhcccccCCCc
Confidence 655332221 111 12222 22345566899999999999987653110
Q ss_pred ---C-Cccccccc---------ch--HHHHHHHHHhhhccccccccccccccHHHHHHHHHHHHHHhHHHHhccCCccch
Q 001571 499 ---C-SLESQEVL---------DA--ELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSS 563 (1051)
Q Consensus 499 ---~-~~~~~~~~---------d~--~L~~~v~~l~~l~~~~~~~~~~~~~s~~~l~~a~l~fl~~~~~~yl~~~~~~~~ 563 (1051)
. ++.++..- |. .+.+++++.-..+...+.+-.-..+| |.+.+.+.||+.+|.++|.... +
T Consensus 194 ~q~L~~~ge~~a~s~~~y~~e~d~~I~~~sa~~~~~~~e~~~v~a~~~~l~S-p~l~~~l~rfl~a~~~~~~~~~----~ 268 (748)
T KOG4541|consen 194 NQWLPPEGEHAAASLFSYIVESDLKIASASATTEDDADELASVSAMDERLGS-PALIARLARFLDATIPFLAKLF----S 268 (748)
T ss_pred ccccCCcccchhhhhhhhhhhcchHHHHhHHHhhhhHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhhhHHHHHh----H
Confidence 0 01111110 00 01122233322222222221224577 5599999999999999998765 7
Q ss_pred HHHHHHHHHhCC------CChHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhcccchhhHHhcchhHHHHHHhcc
Q 001571 564 KLYARLSELLGL------HDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHT 637 (1051)
Q Consensus 564 k~~~~l~~~~g~------~d~~~~~~~~l~~i~~~L~~~~~~~~v~~~~~~Ll~~l~~~~~~~~~l~~~~~~~~l~~~~~ 637 (1051)
+.|..++..+|. ....+.+.++++|+..++..|+++++++.+|++.+..++.+.+.....+.++.|+.+.....
T Consensus 269 ~~y~~~s~~~~tv~p~~te~s~~~~~~ii~kVla~lvn~~sE~~L~~Da~q~l~~lVe~~~~~~vvv~~e~~~~laeq~~ 348 (748)
T KOG4541|consen 269 DHYARLSQGRGTVDPTETEESVYSLLLIIGKVLADLVNGESETALVPDALQSLFVLVEEANNHPVVVLSESIIKLAEQCL 348 (748)
T ss_pred HHHHHhcCCCCCCCcccchhhHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHhccCCeeeccHHHHHHHHHHh
Confidence 899999987764 23468999999999999999999999999999999999998888888899999999998876
Q ss_pred cCCCC--CcccccccchhHHHHHHHHHHHhc--c--CChHHHHHhhHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHH
Q 001571 638 REHFP--FLEEYRCSRSRTTFYYTIGWLIFM--E--ESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDL 711 (1051)
Q Consensus 638 ~~~~~--~l~~~~~~~~r~~~y~al~~~~~~--~--~~~~~~~~~l~p~~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~l 711 (1051)
+...+ +++ ++.|..++++|.+..++ + ...+++...++|+.++|-...+++ +..+++.+|+.-+.++
T Consensus 349 s~~~~l~i~s----~p~~~~lmkaLvl~gfa~~d~e~~~n~~~~~LqpL~~Rf~~~~nq~----~q~~~~~~Ii~~l~~~ 420 (748)
T KOG4541|consen 349 SAEMRLSIFS----PPLMEALMKALVLWGFAYLDLEEECNLGSNKLQPLPSRFFTYFNQH----NQGKFVLDIIVRLSLT 420 (748)
T ss_pred ccCCcccccC----chHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccHHHHHHHhccc----chhhHHHHHHHHHHHh
Confidence 53322 333 34678999999987543 2 356799999999999999887665 5667888999999999
Q ss_pred hhHHhhhccchhHHHHHHHHhhcchHHHHHHhhhhcCCCchHHHHHHHHHHHHhccccceeccCCCcchhhhHHHHHHHH
Q 001571 712 RGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLI 791 (1051)
Q Consensus 712 ~Gi~~a~~~~~~~~~lf~~i~p~~~~~~~~l~~~y~~~~~v~~~iLkl~~e~~~n~~~ri~f~~~s~~~~~lf~~~~~~~ 791 (1051)
.|++.|.+... ...+|++++... .-+..++..|...++++..|+..+.+++.... +..+..+| .+.+|..|.+++
T Consensus 421 ~g~a~a~q~d~-~~~Lf~fL~~~~-~~c~glm~s~~~~~~~v~~i~~~~vdvs~k~~--~y~~~e~~-~~~ly~sclql~ 495 (748)
T KOG4541|consen 421 SGTAYAGQKDL-QRSLFQFLVLSA-YGCRGLMASNQYVKDLVAHITSSLVDVSNKSD--LYNLAEQP-DIILYVSCLQLE 495 (748)
T ss_pred ccccccccchh-HHHHHHHHHHHH-hhhhhHHHHhhccHHHHHHHHHHHHHhhhhhh--hhccccCh-hHHHHHHHHHHH
Confidence 99999998754 799999999985 79999999999999999999999999998543 44444455 667999999999
Q ss_pred HHHHHhhcCCCC-chhhHhhhhhhHHHHHHHHHHhhcCCcccccccc-ccCCCcHHHHHHHHHHhhhccChhhHhhhHhh
Q 001571 792 VAYGSRVLSLPN-AADIYAYKYKGMWICFTILARALAGNYVNFGVFE-LYGDRALSDALDIALKMTLSIPLADILAFRKL 869 (1051)
Q Consensus 792 ~~y~~~~~~~~~-~~~~~~~~~k~l~~~l~il~~~l~~~~vnfg~~~-~y~D~~~~~~l~~~l~~~l~ip~~dl~~yPkl 869 (1051)
+.|+......+. ...+|+|+|.++.+++++|+|.+++||++||.-. .++. ..++...++++.+.++..++++|||+
T Consensus 496 ~~y~~~~~~r~rt~~a~~Ee~~sdl~lvl~lL~n~lskdF~~~s~e~~~~~G--~a~VV~~gl~~ilplm~~~lLk~P~l 573 (748)
T KOG4541|consen 496 RLYGAASATRPRTQRAIYEEGLSDLNLVLRLLENYLSKDFSSDSIETQSTNG--IAQVVYFGLHIILPLMTLELLKYPKL 573 (748)
T ss_pred HHhhhhcccCcchHHHHHHhhhhHHHHHHHHHHHHhhhhhhccccccccccC--cceEEEeeHHHHHHHHHHHHHhchHH
Confidence 999886555542 3455999999999999999999999999998743 3321 24566777888888888999999999
Q ss_pred HHHHHHHHHHHHhhhHHhhhcCCHHHHHHHHHHHHHhhcC-CChHHHhHHHHHHHHHHHHHHHhhccCCCCCChHHHHHH
Q 001571 870 TKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKG-LDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLA 948 (1051)
Q Consensus 870 ~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~~l~~gl~~-~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~ 948 (1051)
|.+||+++.+||+..|++++++|.+.++.++.|+..||+. ...+....|.+.+-++++-.-| |. ..++++
T Consensus 574 c~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMTge~~s~~l~~~~e~v~hfgspank----gr-----cTqnla 644 (748)
T KOG4541|consen 574 CFDDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMTGESHSAGLHTDPEGVFHFGSPANK----GR-----CTQNLA 644 (748)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCccccchHhhccChHhhhcccccccc----cc-----ccccHH
Confidence 9999999999999999999999999999999999999994 4445555566666665554432 22 112232
Q ss_pred HHHhhCCCcHHHHHHHHHHHHhccCCCchh--hchhhhHHHHhcCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHh-h
Q 001571 949 RHIVECPTLFPEILKTLFEIVLFEDCGNQW--SLSRPMLSLILISEQVFSDLKAQILTSQP-VDQHQRLSVCFDKLMA-D 1024 (1051)
Q Consensus 949 ~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~--~~s~~L~~li~~~~~~f~~l~~~li~~q~-~~~~~~l~~af~~L~~-~ 1024 (1051)
++ +.++|+++|+++++++|+++. .+++|||+||||+|..|++++++|+++|. |..++||+.||++||. +
T Consensus 645 -fL------~~efL~tvf~~ll~~~~~t~l~s~a~~Aly~LI~~e~~~y~elvneL~skq~np~~~qrLa~Af~~Lt~sn 717 (748)
T KOG4541|consen 645 -FL------SREFLRTVFHFLLFEDYSTDLVSTAADALYPLILCEPNLYQELVNELISKQANPNFKQRLANAFQVLTTSN 717 (748)
T ss_pred -HH------HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccChHHHHHHHHHHHHHhccC
Confidence 22 456899999999999999987 77999999999999999999999999988 8899999999999999 5
Q ss_pred hhcccChhhHHHHHHHHHHHHHHhhc
Q 001571 1025 VARSLDSKNRDKFTQNLTVFRHEFRV 1050 (1051)
Q Consensus 1025 i~~~l~~~nr~~F~~nl~~F~~~vr~ 1050 (1051)
-.+++||+||-+|++|+..|+.+|-+
T Consensus 718 ~~psldR~~~~~Frk~le~Fl~~V~G 743 (748)
T KOG4541|consen 718 QLPSLDRLNYQRFRKNLENFLVEVLG 743 (748)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhhc
Confidence 56669999999999999999999865
No 4
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-39 Score=392.20 Aligned_cols=789 Identities=16% Similarity=0.203 Sum_probs=530.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--ccCCHHHHHHHH
Q 001571 4 LAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDIR 81 (1051)
Q Consensus 4 l~~lE~~~~~ly~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~r~~lr 81 (1051)
.+.+++.+..++.-+++++|.+|++++.+|+..|+.|..|..||+.|+++.++|||++.|++.|.. +.+|..+|.++|
T Consensus 10 ~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~glk 89 (1041)
T KOG2020|consen 10 SELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSLPVEERVGLK 89 (1041)
T ss_pred HHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccCCccccHHHH
Confidence 456777777766546789999999999999999999999999999999999999999999999985 999999999999
Q ss_pred HHHHHHHHhcCCCc-----hHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhcc--CchhHHHHHHHHHHHHHhc
Q 001571 82 NYLINYLAKRGPEL-----QSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQA--TSDHYAIGLKILNQLVSEM 154 (1051)
Q Consensus 82 ~~ll~~l~~~~~~~-----~~~v~~~l~~~la~i~K~~w~~~~~~~~~i~~i~~~l~~~--~~~~~~~gl~lL~~lv~Ef 154 (1051)
+|+...+...+++. .+++++|++..++.|+||.||..|+ +|+.++.+.+..+ ..++.++.+++|++.|++|
T Consensus 90 ~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp--~~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf~~ 167 (1041)
T KOG2020|consen 90 NYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWP--TFIPDLAQSSKTSETVCELSMIILLLLSEEVFDF 167 (1041)
T ss_pred HHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcc--hhhhhHHHHhhcCcccchHHHHHHHHHHHHHhcc
Confidence 99999999887766 5899999999999999999999998 8999998877432 3467899999999999999
Q ss_pred cCCCCCcchHHhHhhhhhcchhchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCccccccccCC
Q 001571 155 NQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIP 234 (1051)
Q Consensus 155 ~~~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~p 234 (1051)
++..+......|.+. ..+. .+..||++|..++.++.. . ++.+++..+..+++|++.|+. .+
T Consensus 168 ss~~~~q~~~~il~~--~~~~-~f~~i~~l~~~~~~~a~~---~-~~~atl~tl~~fl~wip~~~I-~~----------- 228 (1041)
T KOG2020|consen 168 SSSELTQQKIIILKN--LLEN-EFQQIFTLCSYIKEKANS---E-LLSATLETLLRFLEWIPLGYI-FE----------- 228 (1041)
T ss_pred cchHHHhhhHHHHHH--HhhH-HHHHHHHHHHHHHhhhhh---H-HHHHHHHHHHHHhhcccHHHH-HH-----------
Confidence 987754444444444 4555 488999999998776654 3 899999999999999998885 22
Q ss_pred CCccccccCccHHHHHHHHHhhcCCcchHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHH---hhcC---cCC-
Q 001571 235 SAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEI---LQTG---QGL- 307 (1051)
Q Consensus 235 ~~W~~~l~~~~~l~llf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~i---l~~~---~~l- 307 (1051)
.+.+..+...+. ..|.++..+++||.++++..+..+. .....++...+..+..+ +..+ .+.
T Consensus 229 ---------tn~l~~~l~~~l-n~~~~r~~al~CL~ei~s~~~~~~~--~~~~~~~~~~~~~l~~i~~~l~~~~~~~~~~ 296 (1041)
T KOG2020|consen 229 ---------TNILELLLNKFL-NAPELRNNALSCLTELLSRKRSIYE--RKTVPMFNLTIYQLRSIPQDLDIPEVYSSLS 296 (1041)
T ss_pred ---------hhhHHHHHHhcc-chHHHHHHHHHHHHHHHhccccchh--HHhHHHHHHHHHHHHHhhhhhchhhhhhccc
Confidence 223555555542 4588999999999999999877542 23335555555543322 1111 111
Q ss_pred -CCc-hhHHHHHHHHhhhhhhcchhhhhcc-cChHHHHHHHHHHHHHhhhhhc-cccCcHHHHHHHHHHhhcCcCcccCC
Q 001571 308 -ADH-DNYHEYCRLLGRFRVNYQLSELVNV-EGYSDWIQLVAEFTLKSLQSWQ-WASSSVYYLLGLWSRLVTSVPYLKGD 383 (1051)
Q Consensus 308 -~~~-~~~~~~~~~l~rl~~~~~l~~l~~~-~~~~~~l~~l~~ft~~~l~~~~-~~~~s~~~lL~~W~~lv~~~~~~~~~ 383 (1051)
.++ .....++.++..|.+.| ..-+... ...+..+.. +..++.... ...+.+..|+++|..++.+..|. +
T Consensus 297 ~~dq~~fi~~l~~~l~~f~~~~-~~lle~~~~~~~~~~~~----~~~li~i~~~~~se~~~~~ld~W~~lv~~l~~~--~ 369 (1041)
T KOG2020|consen 297 DEDQDSFIEKLAQFLSLFFEQH-IALLESSLSQRPVLLEA----LLELILISTIEPSEIFKICLDYWNKLVADLYYN--K 369 (1041)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH-HHHHcCchhhhhHHHHH----HHHHHHHhccCchhHHHHHHHHHHHHHHhhhcc--c
Confidence 223 22334788888777776 3333331 111222222 222233332 33467888999999999887554 1
Q ss_pred Ccchhhhh--------------HHHHHHH-------HHhhhcccccccc--CCCCCC---CCCCcH---HHHHHHHhhhh
Q 001571 384 APSLLDEF--------------VPKITEG-------FITSRFNSVQAGF--PDDLSD---NPLDNV---ELLQDQLDCFP 434 (1051)
Q Consensus 384 ~~~~l~~~--------------~~~I~~~-------yi~~~l~~~~~~~--~~e~~e---~~~~d~---~~~~~~le~i~ 434 (1051)
+| .+... ..++++. ....+|.+|+.++ ++|.++ +...|. ..+...++...
T Consensus 370 ~~-ll~~s~~~~~~~~~~ri~~rk~~y~~~~~~~r~l~l~~m~~Pe~vlive~~~~~~vre~~~~~~~~~ly~~~~e~l~ 448 (1041)
T KOG2020|consen 370 PP-LLQLSTTLPSISDYSRIDFRKSIYQEFLSKLRLLRLERMAKPEEVLIVENEQGEIVREFMKDHDFITLYPVLRETLV 448 (1041)
T ss_pred cc-ccccccccccccchhccchHHHHHHHHHHHHHHHHHHHhcCchheeEEechHHHHHHHhccCcchhhhhHHHHHHHH
Confidence 11 10000 0122222 2556677777653 333221 122232 35568899999
Q ss_pred hhhccchhhHHHHHHHhHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHH-HHHHHhhcccccCCCcccccccchHHHH
Q 001571 435 YLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVH-IIAAIVKIKQCTGCSLESQEVLDAELSA 513 (1051)
Q Consensus 435 ~l~r~~~~~t~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~-i~g~~l~~~~~~~~~~~~~~~~d~~L~~ 513 (1051)
+++.++..++..++...+...+++ ..+++..++ ++||.++ ++|+++.. .....++.
T Consensus 449 ~~~~L~~~~t~~~~~~kl~~~l~~-------~~~~~~~ln----~l~~ai~sisg~~~e~------------~e~k~~~~ 505 (1041)
T KOG2020|consen 449 YLLHLDVVDTEKIMTEKLAIQLDG-------DEWSLHNLN----RLCWAIGSISGRMLED------------MEKKFFVA 505 (1041)
T ss_pred HHHHhhhhhhhhhhhHhHHHHhhH-------HHHhhhhhh----hHHHHHHHHHhhhHHH------------HHHHHHHH
Confidence 999999999999999887765443 112444555 8999996 77766551 12235777
Q ss_pred HHHHHhhhcccccc-------ccc--cccccHHHHHHHHHHHHHHhHHHHhccCCccchHHHHHHHHHh-CCCChHHHHH
Q 001571 514 RVLQLINVTDSGLH-------SQR--YCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELL-GLHDHLLLLN 583 (1051)
Q Consensus 514 ~v~~l~~l~~~~~~-------~~~--~~~~s~~~l~~a~l~fl~~~~~~yl~~~~~~~~k~~~~l~~~~-g~~d~~~~~~ 583 (1051)
++.++++++..... ++| |.++.+|++.+++|.|++ +++ .|++++|++.+ |++| |.||
T Consensus 506 v~~d~l~l~E~~~~kdn~avi~~Ni~~vv~q~p~Fl~~h~~~Lk----t~~-------~~L~efmhe~h~gvqd--macd 572 (1041)
T KOG2020|consen 506 VIRDLLNLCERKRGKDNKAVIASNIMYVVGQYPRFLKAHWKFLK----TVV-------HKLFEFMHETHEGVQD--MACD 572 (1041)
T ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHHHhcccchHHHHHHHHHH----HHH-------HHHHHHHhhhhHHHHh--hhHH
Confidence 77777777643332 122 455678999999988887 665 78999999998 8888 8999
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHHHHHhcccchhhHHhcchhHHHHHHhcccCCCCCcccccccchhHHHHHHHHHH
Q 001571 584 VIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWL 663 (1051)
Q Consensus 584 ~~l~~i~~~L~~~~~~~~v~~~~~~Ll~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~l~~~~~~~~r~~~y~al~~~ 663 (1051)
+|++.+..+..+|- ........|.+..++.+.+....++- +.+|+.+|++++.+
T Consensus 573 ~F~~ii~~~~~~fv---------------------~~~~~e~~~fv~~~~~~l~~i~~~l~-----~~q~~~~~~al~~~ 626 (1041)
T KOG2020|consen 573 TFIKIIQKCKRHFV---------------------ITQLGETKPFVGELLLNLTAITEDLQ-----PQQRHTFYEALGLM 626 (1041)
T ss_pred HHHHHHHhhhhhhe---------------------eecccccccchHHHhhcccchhcCch-----HHHHHHHHHHHHHH
Confidence 99999888877641 11122345577777766654332322 45889999999965
Q ss_pred Hhcc----CChHHHHHhhHHHHHHHHHhhcCC---CcccccHHHHHHHHHHHHHHhhHHhhhccchhHHHHHHHHhhcch
Q 001571 664 IFME----ESPVKFKSSMDPLLQVFISLESTP---DSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHM 736 (1051)
Q Consensus 664 ~~~~----~~~~~~~~~l~p~~~~~~~l~~~~---~~~~~~~~~~~~l~~ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~ 736 (1051)
+..+ ...++...+|.-.+..|..+..++ ...+..++....+..++..+..++.+..+ +|....+.+++
T Consensus 627 V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~v~s~~~i~~~~~~~~~sl~~--~f~~~~~~~~~--- 701 (1041)
T KOG2020|consen 627 VSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLETVKSLLNILKTNSRALTSLGS--TFVPQLGKIYL--- 701 (1041)
T ss_pred HHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHHHHHHHHHHHhHHHHHHhcCc--ccccccccccH---
Confidence 5433 234678888888888899875332 35666666666666666666655554443 23333333333
Q ss_pred HHHHHHhhhhcCCCchHH------------------------HHHHHHHHHHhccccceeccCCCc-chh-hhHHHHHHH
Q 001571 737 PLLLKGISHWTDTPEVTT------------------------PLLKFMAEFVLNKAQRLTFDSSSP-NGI-LLFREVSKL 790 (1051)
Q Consensus 737 ~~~~~l~~~y~~~~~v~~------------------------~iLkl~~e~~~n~~~ri~f~~~s~-~~~-~lf~~~~~~ 790 (1051)
+.+..|+.++..+. .+++++..+...- ...+ .+. .+.-.+...
T Consensus 702 ----d~~~l~~~~s~~v~~~~~~~~~~~t~~~~v~~~~svk~ei~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 770 (1041)
T KOG2020|consen 702 ----DMLQLYIKQSELVSINVTAGGSEKTKTPFVKTLRSVKREILKLLETFISKS-------EQRDLYLLMLVPPLLDAV 770 (1041)
T ss_pred ----HHHHHHHHhcccccHHHhcccccccccHHHHHHHHHHHHHHHHHHhccCcc-------cchhHHHHhhhhHHHHHH
Confidence 33344443332221 2333333322210 0000 000 111122222
Q ss_pred HHHHHHhhcCCCCchhhHhhhhhhHHHHHHHHHHhhcCCccccccccccCCCcHHHHHHHHHHhhhccChhhHhhhHhhH
Q 001571 791 IVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLT 870 (1051)
Q Consensus 791 ~~~y~~~~~~~~~~~~~~~~~~k~l~~~l~il~~~l~~~~vnfg~~~~y~D~~~~~~l~~~l~~~l~ip~~dl~~yPkl~ 870 (1051)
+-.|. .++|..+ + ..+..+..++.+.+++ ++. ..++.+...+++|.+.|...|+..||+++
T Consensus 771 ~fd~~---~nvPd~r--~----~~vl~l~~~iv~~Lg~-~i~---------~~~~~i~~~v~~c~l~m~~~d~qe~~e~~ 831 (1041)
T KOG2020|consen 771 LFDYL---DNVPDYR--E----NEVLSLNATIVPKLGE-FIP---------AELPLINIAVLECTLEMINKDFQEYPEHR 831 (1041)
T ss_pred HHHHH---ccCcchh--c----chHHHhhhhhhhhhhh-Hhh---------hhccHHHHHHHhhhhhccccccccchHHH
Confidence 22222 1344333 1 2222344455554432 221 23447788999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHhhhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHH
Q 001571 871 KAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYF 930 (1051)
Q Consensus 871 ~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~~l~~gl~~~~~~i~~~~~~~l~~l~~~~~ 930 (1051)
..||.+++.++..++..+.++|++.++.+++++.|.++|.-++|+..++.++..+...+.
T Consensus 832 ~~f~~lle~l~~~~~~~~~~l~~~~~~~~~~si~~~f~h~~r~i~~~~l~~l~~l~k~~~ 891 (1041)
T KOG2020|consen 832 LNFLLLLEALLLFCFPAFSELPADQVKLVSDSIVWAFHHTMRNIAENGLNILLELLKNLA 891 (1041)
T ss_pred HHHHHHHHHHHHhhhHHHHcCCchhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988887777664
No 5
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.6e-15 Score=174.27 Aligned_cols=905 Identities=13% Similarity=0.105 Sum_probs=475.2
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--ccCCHHHHHHH
Q 001571 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1051)
Q Consensus 3 ~l~~lE~~~~~ly~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~r~~l 80 (1051)
.+..+|.++..+|.+++++..+.++++|...+.+|++|...+.+|+..+++.++||+|.+|+..|++ ...|++++.++
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~qL 84 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEECPANEAVQL 84 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccCChhHHHHH
Confidence 4899999999999998889999999999999999999999999999999999999999999999986 89999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhc-cCc-----hhHHHHHHHHHHHHHhc
Q 001571 81 RNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQ-ATS-----DHYAIGLKILNQLVSEM 154 (1051)
Q Consensus 81 r~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~w~~~~~~~~~i~~i~~~l~~-~~~-----~~~~~gl~lL~~lv~Ef 154 (1051)
+.-++.-+... ...++.|.+|++..+|.+.-.--+|.|| .-+.++...+.. .++ -+|.+-++.|+.+..||
T Consensus 85 ~~klf~~l~~~-~g~~~lVl~kl~~sLasl~l~~~~d~Wp--~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~ 161 (982)
T KOG2022|consen 85 KLKLFLILSRF-AGGPKLVLNKLCASLASLILYMVPDLWP--TAIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEF 161 (982)
T ss_pred HHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHHccccCC--chHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhh
Confidence 99999988877 4559999999999999988887788877 557787766642 222 47899999999999999
Q ss_pred cCCCCCcchHHhHhhhhhcchhchHHHHHHHHHHHHhhhhhhHH----HHHHHHHHHHhHhccccc-cccCCCCCccccc
Q 001571 155 NQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVAS----RLQELALSLCLKCLSFDF-VGTSIDESSEEFG 229 (1051)
Q Consensus 155 ~~~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~----~l~~~~L~l~~~~Lsw~f-~~~~~de~~~d~~ 229 (1051)
+..++.++...-.|...+++.+ .++.+.-.+++........ ..-..+++|... |+- .+....+.
T Consensus 162 q~~~l~~t~~~~l~~eLak~~~---~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~---Wi~~i~~~~~~c----- 230 (982)
T KOG2022|consen 162 QHVTLPLTRRSVLRGELAKFSE---NVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQ---WIRYISLTGMDC----- 230 (982)
T ss_pred hhccchhHHHHHHHHHHHHHHH---HHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHH---HHHHhccccccH-----
Confidence 8766544332223333333222 1222222222221110011 111233333332 553 11110110
Q ss_pred cccCCCCccccccCccHHHHHHHHHhhcCCcchHHHHHHHHHHhcccccCCCCh-----------HHHHHHHH------H
Q 001571 230 TVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTND-----------AARSKFLA------H 292 (1051)
Q Consensus 230 ~~~~p~~W~~~l~~~~~l~llf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~-----------~~~~~~l~------~ 292 (1051)
....+.+++.......+.-+.+=+|++ +.++++.++ ++-..|.+ .
T Consensus 231 --------------~~i~~~ll~~l~~s~~~~~~a~~~cmt----~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~ 292 (982)
T KOG2022|consen 231 --------------DQITQVLLDVLGQSTEGSYEAAEKCMT----IFGNVLADDTLLASVNDIIQPDCEFYRNTITLLIS 292 (982)
T ss_pred --------------HHHHHHHHHHHhhhccccccchhhhcc----cchhhhccchHHHHHHHhcChHHHhccchHHHHHH
Confidence 112233333221111001111111111 011111111 11122222 1
Q ss_pred HHHHHH-HH---hhcCcCCCC--chhHHHHHHHHhhhhhhcchhhhhcccC--hHHHHHHHHHHHHHhhhhhcccc--Cc
Q 001571 293 LMTGTK-EI---LQTGQGLAD--HDNYHEYCRLLGRFRVNYQLSELVNVEG--YSDWIQLVAEFTLKSLQSWQWAS--SS 362 (1051)
Q Consensus 293 ~l~~~~-~i---l~~~~~l~~--~~~~~~~~~~l~rl~~~~~l~~l~~~~~--~~~~l~~l~~ft~~~l~~~~~~~--~s 362 (1051)
+..|.. ++ .+...+ .| +|+.++|+++...+..||...-+..... -.+.+..+-+....+...++..+ |.
T Consensus 293 i~~~~l~e~~~~~~~~e~-~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~ 371 (982)
T KOG2022|consen 293 ICLGILQEVSGKIQEEEN-ADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEI 371 (982)
T ss_pred HHHHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHH
Confidence 122211 00 011111 23 6788899999999999996655554411 12223333444455555565543 44
Q ss_pred HH-HHHHHHHHhhcCcCcccCCC-cchhhhhHHHHHHHHHhhhccccccccCCCCCCCCCCcHHHHHHHHhhhhhhhccc
Q 001571 363 VY-YLLGLWSRLVTSVPYLKGDA-PSLLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELLQDQLDCFPYLCRFQ 440 (1051)
Q Consensus 363 ~~-~lL~~W~~lv~~~~~~~~~~-~~~l~~~~~~I~~~yi~~~l~~~~~~~~~e~~e~~~~d~~~~~~~le~i~~l~r~~ 440 (1051)
+. ..++||..|.+++....++. ++.-..+..+|+..-++--+.+.+--..+...+.+.++++.++..+.-++-+.-..
T Consensus 372 ~S~~~l~FW~tL~dei~~~~~e~~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~diSD~~~~~ 451 (982)
T KOG2022|consen 372 VSDRTLIFWYTLQDEIMQTINETQQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKDISDLLMSS 451 (982)
T ss_pred HhHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 43 47999999998753322221 22223344344444333333332111122334677888887766665565555555
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHHhhcccccCCCcccccccchHHHHHHHHHhh
Q 001571 441 YENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLIN 520 (1051)
Q Consensus 441 ~~~t~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~ 520 (1051)
|+-...-+++.+...+.+. ...+++++..++..| -.++-.-.+.... +......+-++++
T Consensus 452 Y~ilgd~ll~~L~~~l~q~---~aa~d~~p~s~~~tE----aci~~~~sva~~~-------------~~t~~~~i~rl~~ 511 (982)
T KOG2022|consen 452 YSILGDGLLDFLIDTLEQA---LAAGDEDPDSLNRTE----ACIFQFQSVAEYL-------------GETESTWIPRLFE 511 (982)
T ss_pred HHHHhHHHHHHHHHHHHHh---hhccCCCchHHHHHH----HHHHHHHHHHhhc-------------CcchhHHHHHHHH
Confidence 5444444444444433332 222334555454333 2232111222211 1111222334444
Q ss_pred hccccccccccccccHHHHHHHHHHHHHHhHHHHhccCCccchHHHHHHHHHhCCCChHHHHHHHHHHHHhhccCCCCch
Q 001571 521 VTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQ 600 (1051)
Q Consensus 521 l~~~~~~~~~~~~~s~~~l~~a~l~fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~d~~~~~~~~l~~i~~~L~~~~~~~ 600 (1051)
.+ ..+..+ .. +|.+..+...-++.+. .|+++.... ++.-+...+..|. ..
T Consensus 512 ~~-asik~S---~~-n~ql~~Tss~~igs~s-~~l~e~P~~--------------------ln~sl~~L~~~Lh----~s 561 (982)
T KOG2022|consen 512 TS-ASIKLS---AP-NPQLLSTSSDLIGSLS-NWLGEHPMY--------------------LNPSLPLLFQGLH----NS 561 (982)
T ss_pred hc-cccccc---cC-ChhHHHHHHHHHHHHH-HHHhcCCcc--------------------cCchHHHHHHHhc----Cc
Confidence 22 111111 11 3556666666665444 334333221 1111111122221 11
Q ss_pred HHHHHHHHHHHHHhcccchhhHHhcchhHHHHHHhcccCCCCCcccccccchhHHHHHHHHHHHhc---cCChHHHHHhh
Q 001571 601 EVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFM---EESPVKFKSSM 677 (1051)
Q Consensus 601 ~v~~~~~~Ll~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~l~~~~~~~~r~~~y~al~~~~~~---~~~~~~~~~~l 677 (1051)
+.-.+++.-+.++++ +|+.-+ .|....+++. +.+.++-.+ .+ ...|..+|+++|.+..- |+...|+.+++
T Consensus 562 k~s~q~i~tl~tlC~---~C~~~L-~py~d~~~a~-~~e~l~~~~-~~-~S~~~klm~sIGyvls~~~pEe~~kyl~~li 634 (982)
T KOG2022|consen 562 KESEQAISTLKTLCE---TCPESL-DPYADQFSAV-CYEVLNKSN-AK-DSDRLKLMKSIGYVLSRLKPEEIPKYLMKLI 634 (982)
T ss_pred hHHHHHHHHHHHHHH---hhhhhC-chHHHHHHHH-HHHHhcccc-cC-chHHHHHHHHHHHHHHhccHHhHHHHHHHHH
Confidence 111122222445555 233211 1122222211 111111011 11 23788999999998632 34566888888
Q ss_pred HHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHhhHHhhhccch--------hHH-------HHHHHHhhcchHHHHHH
Q 001571 678 DPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRR--------TYG-------LLFDWLYPAHMPLLLKG 742 (1051)
Q Consensus 678 ~p~~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~l~Gi~~a~~~~~--------~~~-------~lf~~i~p~~~~~~~~l 742 (1051)
.|+-..++.... +..++++.+..++..+-++...+.+...+. ..+ ......... ++++-++
T Consensus 635 n~il~qle~~l~---~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~-i~~~~kv 710 (982)
T KOG2022|consen 635 NPILSQLEINLA---PGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKA-IPVFEKV 710 (982)
T ss_pred HHHHHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHH-HHHHHHH
Confidence 888776665532 246777877777777777777666655431 111 333344444 5777788
Q ss_pred hhhhcCCCchHHHHHHHHHHHHhccccceeccCCCcchhhhHHHHHHHHHHHHHhhcCCCCchhhHhhhhhhHHHHHHHH
Q 001571 743 ISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTIL 822 (1051)
Q Consensus 743 ~~~y~~~~~v~~~iLkl~~e~~~n~~~ri~f~~~s~~~~~lf~~~~~~~~~y~~~~~~~~~~~~~~~~~~k~l~~~l~il 822 (1051)
.+.|-++.+|+....+-+.--+.+ -+=.|. .| ....+--.+.+|. +.+.. ..+.+.
T Consensus 711 ~s~~~~~s~vve~~C~i~~~~v~~--~~~sF~--~p----~l~~l~~Fi~r~~----~~~~a------------~tl~l~ 766 (982)
T KOG2022|consen 711 LSMWLGLSDVVEASCIIMVKGVRS--LLTSFP--EP----MLPSLCPFIVRFL----TSCLA------------VTLSLI 766 (982)
T ss_pred HHHHhcchhHHHHHHHHHHhcccc--ccccch--hh----hHHHHHHHHHHhc----cchHH------------HHHHHH
Confidence 888999999988776666544332 111221 11 1111112222222 11110 112222
Q ss_pred HHhhcCCccccccccccCCCcHHHHHHHHHH-hhhccChhhHhhhHhhHHHHHHHHHHHHhhhHHhhhcCCHHHHHHHHH
Q 001571 823 ARALAGNYVNFGVFELYGDRALSDALDIALK-MTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVG 901 (1051)
Q Consensus 823 ~~~l~~~~vnfg~~~~y~D~~~~~~l~~~l~-~~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~ 901 (1051)
..++.-.+..-+. -+-+..-+..+++ ..+..--.-+..-|+.-..+|-++..+.+.+|..+... ...|..++-
T Consensus 767 ~~~l~~~~~~~~~-----~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~-~~~~ts~i~ 840 (982)
T KOG2022|consen 767 AACLLAKSTVEQC-----KPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPS-MLAFTSLIL 840 (982)
T ss_pred HHHHHhhhccccc-----cccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccc-hHHHHHHHH
Confidence 2222111111111 1223333334444 22222223478889999999999999999999765543 334666666
Q ss_pred -HHHHhhcCCChHHHhHHHHHHHHHHHHHHHhhccCCCCCChHHHHHHHHHhh-CCCcHHHHHHHHHHHHhccCCCchh-
Q 001571 902 -SLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVE-CPTLFPEILKTLFEIVLFEDCGNQW- 978 (1051)
Q Consensus 902 -~l~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~ll~~~~~~~~- 978 (1051)
+-..++++-++.-.+.+++.+.+++++.+.+.- ...+ +.+.+ ++.+ +..+|.-+-.+-.+++.
T Consensus 841 ~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~~------~tv~----~~V~~~G~~L----i~~im~~vgg~~~RS~ld 906 (982)
T KOG2022|consen 841 ICAFILLNSPEPTTIRAASQFLTALATYATSHDL------VTVT----SVVAEIGPIL----IYAIMRGVGGEASRSTLD 906 (982)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHhhcccchh------HHHH----HHHHhcchHH----HHHHHHHhcCcCccchhH
Confidence 778899999988888888999998887754210 1111 11111 3333 44444444444445544
Q ss_pred hchhhhHHHHhcCHHHHHHHHHHHHhcCC-h--hhHHHHHHHHHHHHhhhhcccChhhHHHHHHHHHHHHHHhhc
Q 001571 979 SLSRPMLSLILISEQVFSDLKAQILTSQP-V--DQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFRV 1050 (1051)
Q Consensus 979 ~~s~~L~~li~~~~~~f~~l~~~li~~q~-~--~~~~~l~~af~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr~ 1050 (1051)
..++.|+++-.=++..-.....+.++.-. | ..-......|-..+- . +|-||++|.+-+..|--+.|+
T Consensus 907 ~~aDIL~al~~k~~se~r~wl~~~lq~~gfPs~~~s~e~k~rf~t~ll---r--er~n~R~~k~~il~~~L~~~~ 976 (982)
T KOG2022|consen 907 ALADILLALNAKFFSETRTWLKAVLQIPGFPSAGVSNEIKSRFVTSLL---R--ERGNKRNFKQQILEFNLACTG 976 (982)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHH---H--HHhcHHHHHHHHHHHHHHhcC
Confidence 67888888865555444444455552211 2 112344555544432 2 567788888888777666553
No 6
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=2.4e-14 Score=161.41 Aligned_cols=261 Identities=15% Similarity=0.178 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhccCcccHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh--ccCCHHHHHH
Q 001571 4 LAQLEALCERLYNS-QDSVERAHAENTLKCFSVNTDYISQCQFILDNA-LTPYALMLASSSLLKQVTE--HSLALQLRLD 79 (1051)
Q Consensus 4 l~~lE~~~~~ly~~-~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S-~~~~~~f~a~~~L~~~i~~--~~l~~~~r~~ 79 (1051)
++.+|+|+.....| .|++.|++|-..+.+.+++|++|+.|-.+|-++ +++.++|+++++|.+.++. +.....+..-
T Consensus 2 mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elql 81 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQL 81 (980)
T ss_pred chHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHH
Confidence 45789999998887 588999999999999999999999999999887 8899999999999999997 7788899888
Q ss_pred HHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccC-chhHHHHHHHHHHHHHh
Q 001571 80 IRNYLINYLAKRG-----PELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQAT-SDHYAIGLKILNQLVSE 153 (1051)
Q Consensus 80 lr~~ll~~l~~~~-----~~~~~~v~~~l~~~la~i~K~~w~~~~~~~~~i~~i~~~l~~~~-~~~~~~gl~lL~~lv~E 153 (1051)
+|.-+..|+.... ...|.|++||+.++++.+.-..+++.|+ +|..++...+..++ .+..-.-|++|.++=.|
T Consensus 82 vR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~Wn--sfF~dlmsv~~~~s~~~~~dfflkvllaIdsE 159 (980)
T KOG2021|consen 82 VRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWN--SFFDDLMSVFQVDSAISGLDFFLKVLLAIDSE 159 (980)
T ss_pred HHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHhcccchhhHHHHHHHHHHhhhH
Confidence 9999888886331 2468999999999999999999999998 88899887764222 12366778888888888
Q ss_pred ccCCCCCcchHHhHh---hhhhcchhchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCcccccc
Q 001571 154 MNQPNPGLPSTHHRR---VACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGT 230 (1051)
Q Consensus 154 f~~~~~~~~~~~hrk---~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~ 230 (1051)
....+.-.+.+..+| .|-.+|+.+.+++-..-.++++.-.....+.+...+|++.-+..||+=++-.
T Consensus 160 iad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLI---------- 229 (980)
T KOG2021|consen 160 IADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLI---------- 229 (980)
T ss_pred hhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhh----------
Confidence 876665556666665 4668999999999999999887654321245778899999999999844432
Q ss_pred ccCCCCccccccCccHHHHHHHHHhhcCCcchHHHHHHHHHHhcccccCCCChHHHHHHHHHH
Q 001571 231 VQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHL 293 (1051)
Q Consensus 231 ~~~p~~W~~~l~~~~~l~llf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~ 293 (1051)
.+..++++++++.. -.+++..|-.|+.++.|-+-. +-++..+++.+
T Consensus 230 -----------aNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMk----P~dKL~lln~L 275 (980)
T KOG2021|consen 230 -----------ANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMK----PMDKLALLNML 275 (980)
T ss_pred -----------hchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCC----hhHHHHHHHHH
Confidence 34568999988763 456899999999999997732 34677777666
No 7
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=99.79 E-value=2e-17 Score=182.39 Aligned_cols=250 Identities=16% Similarity=0.271 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHhccccceeccCCCcchh---hhHHHHHHHHHHHHHhhcCCCCchhhHhhhhhhHHHHHHHHHHhhcCCc
Q 001571 754 TPLLKFMAEFVLNKAQRLTFDSSSPNGI---LLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNY 830 (1051)
Q Consensus 754 ~~iLkl~~e~~~n~~~ri~f~~~s~~~~---~lf~~~~~~~~~y~~~~~~~~~~~~~~~~~~k~l~~~l~il~~~l~~~~ 830 (1051)
..|||++..++++.. .++.+ ++-..+..++..|.+. .|..+ ++|.+.. ++.+.+.+.+.+
T Consensus 45 keIL~Li~t~i~~~~--------~~~~v~~~~i~~l~~~vL~DY~~~---~p~~r--~~evL~l----~~~ii~kl~~~~ 107 (319)
T PF08767_consen 45 KEILKLIETFISKAE--------DPEEVANNFIPPLLDAVLGDYQNS---VPDAR--EPEVLSL----MATIINKLGELI 107 (319)
T ss_dssp HHHHHHHHHHHHT-S---------HHHHHHHTHHHHHHHHHHHHHHS----GGGS---HHHHHH----HHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhccC--------CHHHHHHHHHHHHHHHHHHHHhcC---Ccccc--ChhHHHH----HHHHHHHHHHhh
Confidence 588999999988431 22222 4445556688888763 44555 6677764 444444444322
Q ss_pred cccccccccCCCcHHHHHHHHHHhhhccChhhHhhhHhhHHHHHHHHHHHHhhhHHhhhcCCHHHHHHHHHHHHHhhcCC
Q 001571 831 VNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGL 910 (1051)
Q Consensus 831 vnfg~~~~y~D~~~~~~l~~~l~~~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~~l~~gl~~~ 910 (1051)
.+.++.+++.++++++.|+.+|+.+||++|.+||+||+++++.|++.+.++|++.|+.+++++.||++|.
T Consensus 108 ----------~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~ 177 (319)
T PF08767_consen 108 ----------QPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT 177 (319)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS
T ss_pred ----------hhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhHHHHHHHHHHHHHHHhhccCCCCCChHHHHHHHHHhhCCCcHHHHHHHHHHHHhccCCCchhhc-hhhhHHHHh
Q 001571 911 DTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSL-SRPMLSLIL 989 (1051)
Q Consensus 911 ~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~-s~~L~~li~ 989 (1051)
+++|+..|++++..+.+.+.+ .+ .+.+..+ .++++..+++.+|.++++.+|+..|.. +..|..|+.
T Consensus 178 ~~~I~~~~L~~l~~ll~~~~~---~~----~~~~~~F------~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 178 NREISETGLNILLELLNNVSK---TN----PEFANQF------YQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH----S----HHHHHHH------HHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHh---cC----HHHHHHH------HHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 11 1333333 235688999999999999999998844 444555542
Q ss_pred c----------------CHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHhhhhcccChhhHHHHHHHHHHHHHHhh
Q 001571 990 I----------------SEQVFSDLKAQILT-SQPVDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFR 1049 (1051)
Q Consensus 990 ~----------------~~~~f~~l~~~li~-~q~~~~~~~l~~af~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr 1049 (1051)
+ +.++-.+...+++. .-|.-.++.+...-..|.+ ...++.+|+..+..|+-.+|
T Consensus 245 ~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~~~qi~~fv~~Lf~------~~~d~~~Fk~~lrDFlI~~k 315 (319)
T PF08767_consen 245 LVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNLSPKQIENFVQGLFE------LNNDPEKFKTHLRDFLIQLK 315 (319)
T ss_dssp HHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH------TTT-HHHHHHHHHHHHHHHT
T ss_pred HHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH------hcCCHHHHHHHHHHHhhhhh
Confidence 2 12222333323322 3343333344444444432 12358899999999998887
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2e-07 Score=105.22 Aligned_cols=559 Identities=17% Similarity=0.198 Sum_probs=298.1
Q ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCC--hhHHHHHHHHHHHHHhh--ccCCHHHHH
Q 001571 5 AQLEALCERLYNS--QDSVERAHAENTLKCFSVNTDYISQCQFILDNALT--PYALMLASSSLLKQVTE--HSLALQLRL 78 (1051)
Q Consensus 5 ~~lE~~~~~ly~~--~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~--~~~~f~a~~~L~~~i~~--~~l~~~~r~ 78 (1051)
+.|.++++.+.++ ++.+.|+.+...+.+|..-|+.-.+.-+||-+.++ .-++=.|.-.|++-++- +.++++...
T Consensus 10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~ 89 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLD 89 (885)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHH
Confidence 3456666666654 56688999999999999999999999999977554 55555565567777764 677776666
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHh----c
Q 001571 79 DIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSE----M 154 (1051)
Q Consensus 79 ~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~w~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~E----f 154 (1051)
-+|+-+++=+ -+.++.++.-.-.++-.|+-.+-..+|| +..+.+++.+.+.+..++.=+..-|+-+.++ +
T Consensus 90 yiKs~~l~~l----gd~~~lIr~tvGivITTI~s~~~~~~wp--elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~l 163 (885)
T KOG2023|consen 90 YIKSECLHGL----GDASPLIRATVGIVITTIASTGGLQHWP--ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFL 163 (885)
T ss_pred HHHHHHHhhc----cCchHHHHhhhhheeeeeecccccccch--hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHH
Confidence 6666665544 2334567766666666666665566676 7788888888655545555555555555554 2
Q ss_pred cCCCCCcchHHhHhhhhhcchhchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCccccccccCC
Q 001571 155 NQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIP 234 (1051)
Q Consensus 155 ~~~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~p 234 (1051)
.+.-.+.++. --+++++++. +. .+ .++...++.+...++ ...+-
T Consensus 164 ds~~~~rpl~-----------~mipkfl~f~----~h---~s-pkiRs~A~~cvNq~i---~~~~q-------------- 207 (885)
T KOG2023|consen 164 DSDVLTRPLN-----------IMIPKFLQFF----KH---PS-PKIRSHAVGCVNQFI---IIQTQ-------------- 207 (885)
T ss_pred hhhcccCchH-----------HhHHHHHHHH----hC---CC-hhHHHHHHhhhhhee---ecCcH--------------
Confidence 2211111221 1233333321 11 11 245556665555432 11110
Q ss_pred CCcccccc-CccHHHHHHHHHhhcCCcchHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHhhcCcCCCCchhH
Q 001571 235 SAWRPVLE-DPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNY 313 (1051)
Q Consensus 235 ~~W~~~l~-~~~~l~llf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~~~~~ 313 (1051)
++.. =+.+++.+|.+....+|+.+...-..++-+--+| .+.-+.++..+++......+ . .|++.-
T Consensus 208 ----al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr------~dkl~phl~~IveyML~~tq---d-~dE~VA 273 (885)
T KOG2023|consen 208 ----ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVR------PDKLVPHLDNIVEYMLQRTQ---D-VDENVA 273 (885)
T ss_pred ----HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc------HHhcccchHHHHHHHHHHcc---C-cchhHH
Confidence 0000 0357888898886667888888888888887766 23344566777664433322 2 456666
Q ss_pred HHHHHHHhhhhhhcchhhhhcccChHHHHHHHHHHHHHhhhhhccccCcHHHHHHHHHHhhcCcCcccCCCcchhhhhHH
Q 001571 314 HEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKGDAPSLLDEFVP 393 (1051)
Q Consensus 314 ~~~~~~l~rl~~~~~l~~l~~~~~~~~~l~~l~~ft~~~l~~~~~~~~s~~~lL~~W~~lv~~~~~~~~~~~~~l~~~~~ 393 (1051)
.|-|.+...+.++--..+ ...+++.. +.-..++...+++++ ..||+ . ..+ ++.--+..+.+ .|
T Consensus 274 LEACEFwla~aeqpi~~~-----~L~p~l~k---liPvLl~~M~Ysd~D-~~LL~--~--~ee-D~~vpDreeDI---kP 336 (885)
T KOG2023|consen 274 LEACEFWLALAEQPICKE-----VLQPYLDK---LIPVLLSGMVYSDDD-IILLK--N--NEE-DESVPDREEDI---KP 336 (885)
T ss_pred HHHHHHHHHHhcCcCcHH-----HHHHHHHH---HHHHHHccCcccccc-HHHhc--C--ccc-cccCCchhhhc---cc
Confidence 788999988887642221 12333333 323333444443333 12332 1 010 01000111111 12
Q ss_pred HHHHHHHhhhcccccccc-CCCCCCCCCCcHHHHH------HHHhhhhhhhccchhhHHHHHHHhHHHHHHHHHHHhhcC
Q 001571 394 KITEGFITSRFNSVQAGF-PDDLSDNPLDNVELLQ------DQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQ 466 (1051)
Q Consensus 394 ~I~~~yi~~~l~~~~~~~-~~e~~e~~~~d~~~~~------~~le~i~~l~r~~~~~t~~~L~~~l~~~~~~~~~~~~~~ 466 (1051)
+ |.++|........ +||++||+.||++.+. ---..+..++..-.++.++.+.-++++.+..
T Consensus 337 R----fhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~-------- 404 (885)
T KOG2023|consen 337 R----FHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS-------- 404 (885)
T ss_pred h----hhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc--------
Confidence 2 3444433221111 1222233334444331 1112334445555666666666666654211
Q ss_pred CCCcchhhhHHHHHHHHH-----HHHHHHhhcccccCCCcccccccchHHHHHHHHHhhhccccccccccccccHHHHHH
Q 001571 467 TGDKSEISVIEAKLAWIV-----HIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDR 541 (1051)
Q Consensus 467 ~~~~~~l~~~~e~L~Wli-----~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~l~~~~~~~~~~~~~s~~~l~~ 541 (1051)
=.|.+ +-.|++-.|--.. -.+.+ ++|+...+++++ ++. |.+-+
T Consensus 405 -------------~~W~vrEagvLAlGAIAEGcM~g-----~~p~L-peLip~l~~~L~--DKk-----------plVRs 452 (885)
T KOG2023|consen 405 -------------EEWKVREAGVLALGAIAEGCMQG-----FVPHL-PELIPFLLSLLD--DKK-----------PLVRS 452 (885)
T ss_pred -------------chhhhhhhhHHHHHHHHHHHhhh-----cccch-HHHHHHHHHHhc--cCc-----------cceee
Confidence 02333 3334444322000 01112 256655566653 111 22333
Q ss_pred HHHHHHHHhHHHHhccCCccchHHHHHHHHHhCCCChHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhcccchhh
Q 001571 542 AILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGK 621 (1051)
Q Consensus 542 a~l~fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~d~~~~~~~~l~~i~~~L~~~~~~~~v~~~~~~Ll~~l~~~~~~~~ 621 (1051)
--.|-+.||.+-.+.+.. .+.+. .++.-+++++.. ++.+|.+.|+.-|..+-.. .+.
T Consensus 453 ITCWTLsRys~wv~~~~~---~~~f~------------pvL~~ll~~llD------~NK~VQEAAcsAfAtleE~--A~~ 509 (885)
T KOG2023|consen 453 ITCWTLSRYSKWVVQDSR---DEYFK------------PVLEGLLRRLLD------SNKKVQEAACSAFATLEEE--AGE 509 (885)
T ss_pred eeeeeHhhhhhhHhcCCh---HhhhH------------HHHHHHHHHHhc------ccHHHHHHHHHHHHHHHHh--ccc
Confidence 446888888865554331 22222 233333443332 3567777777777666653 222
Q ss_pred HHhcchhHHHHHHhcccCCCCCcccccccchhHHHHHHHHHHHhc---c-CChHHHHHhhHHHHHHHHHhhcCCCccccc
Q 001571 622 LLLKLDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFM---E-ESPVKFKSSMDPLLQVFISLESTPDSMFRT 697 (1051)
Q Consensus 622 ~l~~~~~~~~l~~~~~~~~~~~l~~~~~~~~r~~~y~al~~~~~~---~-~~~~~~~~~l~p~~~~~~~l~~~~~~~~~~ 697 (1051)
.| .|....++.+.. |.|-. -+ .|.-..+|-|+|.++-. . ...+|++-+|.|+-++|..+...+
T Consensus 510 eL--Vp~l~~IL~~l~---~af~k-YQ-~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D------ 576 (885)
T KOG2023|consen 510 EL--VPYLEYILDQLV---FAFGK-YQ-KKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSD------ 576 (885)
T ss_pred hh--HHHHHHHHHHHH---HHHHH-Hh-hcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCccc------
Confidence 22 235555665542 11210 00 11224899999998622 1 357899999999999999987433
Q ss_pred HHHHHHHHHHHHHHhhHHhhhcc
Q 001571 698 DAVKCALIGLMRDLRGIAMATNS 720 (1051)
Q Consensus 698 ~~~~~~l~~ll~~l~Gi~~a~~~ 720 (1051)
+++.-+++|+..|+.|...
T Consensus 577 ----KdLfPLLEClSsia~AL~~ 595 (885)
T KOG2023|consen 577 ----KDLFPLLECLSSIASALGV 595 (885)
T ss_pred ----chHHHHHHHHHHHHHHHhc
Confidence 3488999999999999976
No 9
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=5.2e-07 Score=109.11 Aligned_cols=149 Identities=18% Similarity=0.229 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--ccCCHHHHHHH
Q 001571 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1051)
Q Consensus 3 ~l~~lE~~~~~ly~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~r~~l 80 (1051)
+.+.|+++...+..|. ++.|++||+.+...-..+...+...+|+.+++++.++=+|+-.+++.+++ +.++.+.|.+|
T Consensus 2 ~~~~l~qLl~~l~spD-n~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 2 DSAPLEQLLQQLLSPD-NEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred chhHHHHHHHHhcCCC-chHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 4578999999988655 58899999999855555559999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCC
Q 001571 81 RNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQP 157 (1051)
Q Consensus 81 r~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~w~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~~~ 157 (1051)
|+-+|.-+.+- ..+-|+.|++.++|.|.|..-++.|| +.++-+.+..++.++..+..++.||+.+++.|...
T Consensus 81 ks~lL~~~~~E---~~~~vr~k~~dviAeia~~~l~e~WP--ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 81 KSSLLEIIQSE---TEPSVRHKLADVIAEIARNDLPEKWP--ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHHHHhc---cchHHHHHHHHHHHHHHHhccccchH--HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc
Confidence 99999988754 35689999999999999998888887 66666666666667788999999999999888653
No 10
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.98 E-value=4.3e-09 Score=103.94 Aligned_cols=147 Identities=22% Similarity=0.361 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhccC-CCCCcchHHhHhhhhhcc
Q 001571 96 QSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQ-PNPGLPSTHHRRVACSFR 174 (1051)
Q Consensus 96 ~~~v~~~l~~~la~i~K~~w~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~~-~~~~~~~~~hrk~~~~f~ 174 (1051)
|++|++|++.++|.|.++.||+.|+ ++++++.+.++ .++.+...++.+|..+.+|+.. .+...+..+++..+..++
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp--~~l~~l~~~~~-~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWP--DFLEDLLQLLQ-SSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCc--hHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 6799999999999999999999998 89999999884 4688899999999999999975 233344555555565676
Q ss_pred hhchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCccccccccCCCCccccccCccHHHHHHHHH
Q 001571 175 DQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYY 254 (1051)
Q Consensus 175 ~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~p~~W~~~l~~~~~l~llf~~y 254 (1051)
+. .+.++....+++.+........+...+|+++.++++|...+. +.+.++++.+|+..
T Consensus 78 ~~-~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~---------------------i~~~~~l~~~~~~l 135 (148)
T PF08389_consen 78 SN-SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIEL---------------------IINSNLLNLIFQLL 135 (148)
T ss_dssp HH-HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHH---------------------HHSSSHHHHHHHHT
T ss_pred HH-HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHH---------------------hccHHHHHHHHHHc
Confidence 65 888888888888775432224678899999999998875433 23355899999876
Q ss_pred hhcCCcchHHHHHHH
Q 001571 255 AITEAPLSKEALECL 269 (1051)
Q Consensus 255 ~~~~~~l~~~~l~cL 269 (1051)
..+++...|.+||
T Consensus 136 --~~~~~~~~A~~cl 148 (148)
T PF08389_consen 136 --QSPELREAAAECL 148 (148)
T ss_dssp --TSCCCHHHHHHHH
T ss_pred --CCHHHHHHHHHhC
Confidence 6778899999997
No 11
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=0.00077 Score=79.09 Aligned_cols=177 Identities=15% Similarity=0.178 Sum_probs=123.6
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhh---------ccCC
Q 001571 6 QLEALCERLYNS--QDSVERAHAENTLKCFSVNTDYISQCQFILDNAL-TPYALMLASSSLLKQVTE---------HSLA 73 (1051)
Q Consensus 6 ~lE~~~~~ly~~--~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~-~~~~~f~a~~~L~~~i~~---------~~l~ 73 (1051)
.+|.+.+.+... +|++.|+.||+.|.+...++.+--..-.++.+++ .+.++--|+..+++.++| ..+.
T Consensus 3 ~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~ 82 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKII 82 (960)
T ss_pred cHHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccc
Confidence 355566666554 3578899999999999988888778888898887 677888888889999985 2467
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHH-HHH
Q 001571 74 LQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQ-LVS 152 (1051)
Q Consensus 74 ~~~r~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~w~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~-lv~ 152 (1051)
.++|..||.-++....+. +.-+..++..++..|.|+.+|+.|| +.++|+++.+++++. +...|.--..+ +-.
T Consensus 83 ~~~~e~ikslIv~lMl~s----~~~iQ~qlseal~~Ig~~DFP~kWp--tLl~dL~~~ls~~D~-~~~~gVL~tahsiFk 155 (960)
T KOG1992|consen 83 EEDREQIKSLIVTLMLSS----PFNIQKQLSEALSLIGKRDFPDKWP--TLLPDLVARLSSGDF-NVINGVLVTAHSIFK 155 (960)
T ss_pred hhHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHHHhccccchhhH--HHHHHHHhhccccch-HHHHHHHHHHHHHHH
Confidence 788999999999877654 4568889999999999999999999 899999988854333 33444322222 222
Q ss_pred hccCC-CCCcchHHhHhhhhhcchhchHHHHHHHHHHHH
Q 001571 153 EMNQP-NPGLPSTHHRRVACSFRDQSLFQIFQISLTSLG 190 (1051)
Q Consensus 153 Ef~~~-~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~ 190 (1051)
-|+.. +..--|..-++|.-+|.. -|..+|+...+..+
T Consensus 156 r~R~efrSdaL~~EIK~vLd~f~~-Plt~Lf~~t~~l~~ 193 (960)
T KOG1992|consen 156 RYRPEFRSDALWLEIKLVLDRFAE-PLTDLFRKTMELIQ 193 (960)
T ss_pred hcCcccccHHHHHHHHHHHHhhHh-HHHHHHHHHHHHHh
Confidence 22210 111124555555555554 36666666655554
No 12
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=6.2e-07 Score=100.79 Aligned_cols=309 Identities=20% Similarity=0.248 Sum_probs=190.2
Q ss_pred HHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q 001571 24 AHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDIRNYLINYLAKRGPELQSFVTA 101 (1051)
Q Consensus 24 ~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~r~~lr~~ll~~l~~~~~~~~~~v~~ 101 (1051)
..|.++|.+|+.++++|..|..||..-...++..||+++++..|.. +.+|+.+-.++|+-+...+.+. .+.++-++.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l-~~~~~~i~t 80 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKEL-HDHPDVIRT 80 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHH-HhCCchHHH
Confidence 4689999999999999999999999999999999999999999997 9999999999999888887766 445558899
Q ss_pred HHHHHHHHHHh--hccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCCCCCcchHHhHhhhhhcchh---
Q 001571 102 SLIQLLCRLTK--FGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQ--- 176 (1051)
Q Consensus 102 ~l~~~la~i~K--~~w~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~~~~~~~~~~~hrk~~~~f~~~--- 176 (1051)
+++..+|.+.- .+|.+ -+.++....++ .+...+.-|.+|..+++|..+.... ..-.|+. .|.++
T Consensus 81 QL~vavA~Lal~~~~W~n------~I~e~v~~~~~-~~~~~~~lLeiL~VlPEE~~~~~~~--~~a~Rr~--e~~~~l~~ 149 (559)
T KOG2081|consen 81 QLAVAVAALALHMPEWVN------PIFELVRALSN-KHPAVPILLEILKVLPEETRDIRLT--VGANRRH--EFIDELAA 149 (559)
T ss_pred HHHHHHHHHHHHhHhhcc------hHHHHHHHhhc-CCccHHHHHHHHHhCcHhhcchhhh--hhhhhHH--HHHHHHHH
Confidence 99888887655 46654 25555444422 2223778899999999999765421 1111111 23222
Q ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHhc-cccccccCCCCCccccccccCCCCccccccCccHHHHHHHHHh
Q 001571 177 SLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCL-SFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYA 255 (1051)
Q Consensus 177 ~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~L-sw~f~~~~~de~~~d~~~~~~p~~W~~~l~~~~~l~llf~~y~ 255 (1051)
+-..+......+|+....++ ...+.++ .+|+ ||--.+-.+-+ . ++....++.+.|....
T Consensus 150 ~~~~~L~~l~~lLe~~~l~~-~~~l~~V----l~~l~SWl~~~~~~~d----~-----------v~a~~pLi~l~F~sl~ 209 (559)
T KOG2081|consen 150 QVSKVLVFLSDLLERSDLKS-SDDLEQV----LRCLGSWLRLHVFPPD----Q-----------VLASFPLITLAFRSLS 209 (559)
T ss_pred hHHHHHHHHHHHHhhcCCCh-hhHHHHH----HHHHhhhhhhccCCHH----H-----------HHhhhHHHHHHHHHcc
Confidence 24445555555555432211 2333444 4555 57653322100 0 1122246777777654
Q ss_pred hcCCcchHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHhhcC----cCCCCchhHHHHHHHHhhhhhhcchhh
Q 001571 256 ITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTG----QGLADHDNYHEYCRLLGRFRVNYQLSE 331 (1051)
Q Consensus 256 ~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~----~~l~~~~~~~~~~~~l~rl~~~~~l~~ 331 (1051)
...+-..+.+|+..+-.-..+. ++.+ .|-..++.+. .+++.. ..-.|.+-...+||++.-+...|- ..
T Consensus 210 --~~~lhe~At~cic~ll~~~~~~---~~~~-~~~~~l~~~v-~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~-~~ 281 (559)
T KOG2081|consen 210 --DDELHEEATECICALLYCSLDR---SEGL-PLAAILFIGV-IILETAFHLAMAGEDLDKNEAICRIFTELGEAFV-VL 281 (559)
T ss_pred --cchhhHHHHHHHHHHHHHhhhh---hccC-chhHHHhccc-cccchHHHHhhcccCHHHHHHHHHHHHHHHHHHH-HH
Confidence 5567788888888776432111 1111 2433333332 233332 222445555678999999999983 33
Q ss_pred hhcccChHHHHHHHHHHHHHhhhhhccccCcHHHHHHHHHHhhcCc
Q 001571 332 LVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSV 377 (1051)
Q Consensus 332 l~~~~~~~~~l~~l~~ft~~~l~~~~~~~~s~~~lL~~W~~lv~~~ 377 (1051)
+...+. .|+..+-.+ ..+-....+ +...+-+.+|.++...+
T Consensus 282 i~~np~--~~l~~vell-Ll~~~h~~~--evie~SF~fW~~lse~l 322 (559)
T KOG2081|consen 282 ISTNPE--EFLRIVELL-LLVAGHNDT--EVIEASFNFWYSLSEEL 322 (559)
T ss_pred HhhCCC--cchhHHHHH-HHhccCCch--hhhhhhHHhhhhhHHHH
Confidence 444444 234333221 111112222 56677899999998765
No 13
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=0.0017 Score=78.03 Aligned_cols=162 Identities=19% Similarity=0.213 Sum_probs=130.5
Q ss_pred CCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhH-HHHHHHHHHHHHhh---cc--------CCHHHHHHHHHHHH
Q 001571 18 QDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYA-LMLASSSLLKQVTE---HS--------LALQLRLDIRNYLI 85 (1051)
Q Consensus 18 ~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~-~f~a~~~L~~~i~~---~~--------l~~~~r~~lr~~ll 85 (1051)
++++.|..||+.|.++...|.....|-+|.-....+.. +--|+--+++.|++ .. +++++|.-+|+-++
T Consensus 16 ~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~irenIl 95 (1010)
T KOG1991|consen 16 SDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRENIL 95 (1010)
T ss_pred CChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHHHHH
Confidence 35789999999999999999999999999988777665 77777789999996 34 78999999999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc--CCCCCcch
Q 001571 86 NYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMN--QPNPGLPS 163 (1051)
Q Consensus 86 ~~l~~~~~~~~~~v~~~l~~~la~i~K~~w~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~--~~~~~~~~ 163 (1051)
.++++. |..+|.++..++-.|+|...|+.|+ .++..+..++.+++..+..-||-.|..++..+. ...--.+.
T Consensus 96 ~~iv~~----p~~iRvql~~~l~~Ii~~D~p~~Wp--~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l 169 (1010)
T KOG1991|consen 96 ETIVQV----PELIRVQLTACLNTIIKADYPEQWP--GLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPL 169 (1010)
T ss_pred HHHHhC----chHHHHHHHHHHHHHHhcCCcccch--hHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccH
Confidence 999875 7789999999999999999999998 888899889966666788899999999987664 22211111
Q ss_pred HHhHhhhhhcchhchHHHHHHHHHHHHhh
Q 001571 164 THHRRVACSFRDQSLFQIFQISLTSLGQL 192 (1051)
Q Consensus 164 ~~hrk~~~~f~~~~L~~if~~~~~~L~~~ 192 (1051)
-..++ +.++.|.+...++|.+-
T Consensus 170 ------~~~v~-~~fP~il~~~~~ll~~~ 191 (1010)
T KOG1991|consen 170 ------GEAVE-ELFPDILQIFNGLLSQE 191 (1010)
T ss_pred ------HHHHH-HHHHHHHHHHHhhcccc
Confidence 11233 45888888888887753
No 14
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.13 E-value=9.1e-06 Score=70.05 Aligned_cols=64 Identities=25% Similarity=0.283 Sum_probs=59.6
Q ss_pred HHHHHHhhccC-cccHHHHHHHH-hcCCChhHHHHHHHHHHHHHhh--c--------cCCHHHHHHHHHHHHHHHH
Q 001571 26 AENTLKCFSVN-TDYISQCQFIL-DNALTPYALMLASSSLLKQVTE--H--------SLALQLRLDIRNYLINYLA 89 (1051)
Q Consensus 26 Ae~~L~~f~~~-~~~~~~~~~iL-~~S~~~~~~f~a~~~L~~~i~~--~--------~l~~~~r~~lr~~ll~~l~ 89 (1051)
||+.|.+|+.. |++|..|..|+ ..+.+++++++|+..|++.|++ . .+|+++|..||+++++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 79999999988 99999999999 5566999999999999999997 6 8999999999999999875
No 15
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.041 Score=64.72 Aligned_cols=218 Identities=17% Similarity=0.181 Sum_probs=128.4
Q ss_pred CCCHHHHHHHHHHHHhhccC--cccHHHHHHHHhc-CCChhHHHHHHHHHHHHHhh-------------ccCCHHHHHHH
Q 001571 17 SQDSVERAHAENTLKCFSVN--TDYISQCQFILDN-ALTPYALMLASSSLLKQVTE-------------HSLALQLRLDI 80 (1051)
Q Consensus 17 ~~~~~~r~~Ae~~L~~f~~~--~~~~~~~~~iL~~-S~~~~~~f~a~~~L~~~i~~-------------~~l~~~~r~~l 80 (1051)
++|+..|..||+.|.++++. |..+...-.+|-+ -++++++..|.-.|++.+.. -.++.+-|+++
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqV 91 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQV 91 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 35667899999999999852 4555555566655 46799999999999998762 35788888888
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCC-hhhhhHHHHHHHHHhccCch-hHHHHHHHHHHHHHhccCCC
Q 001571 81 RNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDD-DRFRDLVKESTNFLSQATSD-HYAIGLKILNQLVSEMNQPN 158 (1051)
Q Consensus 81 r~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~w~~~-~~~~~~i~~i~~~l~~~~~~-~~~~gl~lL~~lv~Ef~~~~ 158 (1051)
|++++.-+- ...+.+.+...+++|.|...+-|.+ || +++..+..-.....+. +..-.|.-+--+-++..+..
T Consensus 92 K~~il~tL~----~~ep~~~s~Aaq~va~IA~~ElP~n~wp--~li~~lv~nv~~~~~~~~k~~slealGyice~i~pev 165 (859)
T KOG1241|consen 92 KNNILRTLG----SPEPRRPSSAAQCVAAIACIELPQNQWP--ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEV 165 (859)
T ss_pred HHHHHHHcC----CCCCCccchHHHHHHHHHHhhCchhhCH--HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHH
Confidence 888888763 2345677888999999999999865 77 6777766544222221 22223333333333333211
Q ss_pred CCcchHHhHhhhhhcchhchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhHhccccccccCCCCCccccccccCCCCcc
Q 001571 159 PGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWR 238 (1051)
Q Consensus 159 ~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~p~~W~ 238 (1051)
. +++.=.-++..+....+.-.+ ..+.-.+++.+..+|.|.-.... .|..- +
T Consensus 166 ----l----------~~~sN~iLtaIv~gmrk~e~s---~~vRLaa~~aL~nsLef~~~nF~-~E~er-n---------- 216 (859)
T KOG1241|consen 166 ----L----------EQQSNDILTAIVQGMRKEETS---AAVRLAALNALYNSLEFTKANFN-NEMER-N---------- 216 (859)
T ss_pred ----H----------HHHHhHHHHHHHhhccccCCc---hhHHHHHHHHHHHHHHHHHHhhc-cHhhh-c----------
Confidence 1 111011112222222222111 23455788888888865422121 12111 0
Q ss_pred ccccCccHHHHHHHHHhhcCCcchHHHHHHHHHHhcc
Q 001571 239 PVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASV 275 (1051)
Q Consensus 239 ~~l~~~~~l~llf~~y~~~~~~l~~~~l~cL~~l~sl 275 (1051)
-+++..-+....++.++.+.+++||+.|.++
T Consensus 217 ------~iMqvvcEatq~~d~~i~~aa~~ClvkIm~L 247 (859)
T KOG1241|consen 217 ------YIMQVVCEATQSPDEEIQVAAFQCLVKIMSL 247 (859)
T ss_pred ------eeeeeeeecccCCcHHHHHHHHHHHHHHHHH
Confidence 0122222222234567899999999999976
No 16
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=2 Score=51.45 Aligned_cols=160 Identities=16% Similarity=0.090 Sum_probs=120.6
Q ss_pred CCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhh-------ccCCHHHHHHHHHHHHHHHH
Q 001571 18 QDSVERAHAENTLKCFSVNTDYISQCQFILDNAL-TPYALMLASSSLLKQVTE-------HSLALQLRLDIRNYLINYLA 89 (1051)
Q Consensus 18 ~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~-~~~~~f~a~~~L~~~i~~-------~~l~~~~r~~lr~~ll~~l~ 89 (1051)
+++..++-||+.|.++...|........|.-+.+ +..+++.|+--+++.|.| ..+|+++|..||.-++..+.
T Consensus 12 ~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~iR~~Ll~~~~ 91 (978)
T KOG1993|consen 12 QDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDFIRCNLLLHSD 91 (978)
T ss_pred CCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 4567899999999999999999998888876654 567888998888888864 68999999999998887664
Q ss_pred hcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhc----cCchhHHHHHHHHHHHHHhccCCCCCcchHH
Q 001571 90 KRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQ----ATSDHYAIGLKILNQLVSEMNQPNPGLPSTH 165 (1051)
Q Consensus 90 ~~~~~~~~~v~~~l~~~la~i~K~~w~~~~~~~~~i~~i~~~l~~----~~~~~~~~gl~lL~~lv~Ef~~~~~~~~~~~ 165 (1051)
+ ..+.+..+...++++|.+..+|-.|| +.++++.+-+++ ++...+...+..+..++.++++.+.
T Consensus 92 E----~~nQlaiQ~AvlisrIARlDyPreWP--~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL------ 159 (978)
T KOG1993|consen 92 E----ENNQLAIQNAVLISRIARLDYPREWP--DLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRL------ 159 (978)
T ss_pred c----chhHHHHHHHHHHHHHHhcCCCccch--hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHH------
Confidence 3 35678889999999999999988888 777777666543 2445666777788888888876552
Q ss_pred hHhhhhhcchhchHHHHHHHHHHHHh
Q 001571 166 HRRVACSFRDQSLFQIFQISLTSLGQ 191 (1051)
Q Consensus 166 hrk~~~~f~~~~L~~if~~~~~~L~~ 191 (1051)
.+++..|.+. -+.|+......+.+
T Consensus 160 -~a~rk~F~el-~~~I~~~l~~~l~s 183 (978)
T KOG1993|consen 160 -LADRKAFYEL-APEILTILAPILWS 183 (978)
T ss_pred -hhhhHHHHHH-hHHHHHHHHHHHhc
Confidence 2333347654 56666654444443
No 17
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=96.49 E-value=0.094 Score=63.18 Aligned_cols=147 Identities=16% Similarity=0.157 Sum_probs=110.5
Q ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh-------ccC
Q 001571 1 MESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNA-LTPYALMLASSSLLKQVTE-------HSL 72 (1051)
Q Consensus 1 ~~~l~~lE~~~~~ly~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S-~~~~~~f~a~~~L~~~i~~-------~~l 72 (1051)
|++++.++++-.. . ++++..++.||+.|+++...++.--....|--.. .+-..+.-|+--+++.|.+ +.+
T Consensus 1 M~~~~vv~~~~~a-q-s~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i 78 (947)
T COG5657 1 MEDLPVVKQLDLA-Q-SPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSI 78 (947)
T ss_pred CCchHHHHHHHhh-c-CCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCC
Confidence 5555555554422 2 2345678999999999998888877788777665 4556677777778887763 578
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHH
Q 001571 73 ALQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVS 152 (1051)
Q Consensus 73 ~~~~r~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~w~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ 152 (1051)
.++++.-||.-+++.+.+. +....-+...++++|.+..+||.|| +.++|+...+++++.......+..+.+++.
T Consensus 79 ~p~e~v~IR~~l~~lii~s----~n~l~iq~a~avs~IA~~DfPdeWp--TL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk 152 (947)
T COG5657 79 LPDENVLIRDELFSLIISS----SNQLQIQNALAVSRIARLDFPDEWP--TLVPDLLSLLSEKDMVTNENSLRVLHHIFK 152 (947)
T ss_pred CCccchHHHHHHHHHHHcc----cchHHHHHHHHHHHHHhccCcccch--hHHHHHHhhhcccchHHHHHHHHHHHHHHH
Confidence 8888889999999999875 2233447889999999999999999 899999998866555566666677777776
Q ss_pred hcc
Q 001571 153 EMN 155 (1051)
Q Consensus 153 Ef~ 155 (1051)
++.
T Consensus 153 ~~r 155 (947)
T COG5657 153 RLR 155 (947)
T ss_pred HHh
Confidence 654
No 18
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.97 E-value=6 Score=48.40 Aligned_cols=131 Identities=17% Similarity=0.221 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHHHhhccCcccHHH-HHHHHhcCCChhHHHHHHHHHHHHHhh------------ccCCHHHHHHHHHHH
Q 001571 18 QDSVERAHAENTLKCFSVNTDYISQ-CQFILDNALTPYALMLASSSLLKQVTE------------HSLALQLRLDIRNYL 84 (1051)
Q Consensus 18 ~~~~~r~~Ae~~L~~f~~~~~~~~~-~~~iL~~S~~~~~~f~a~~~L~~~i~~------------~~l~~~~r~~lr~~l 84 (1051)
++...|.+||..+.++.-.++.-.. |.-....-.+-..+-+|+-.|++.|.. ...+.+.|.-||+-+
T Consensus 16 ~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~e~~K~~IRe~L 95 (1005)
T KOG2274|consen 16 ADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVSEEVKALIREQL 95 (1005)
T ss_pred CChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcccHHHHHHHHHHH
Confidence 4667899999999999755554333 333444434445555666778888763 124567778888888
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhc
Q 001571 85 INYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEM 154 (1051)
Q Consensus 85 l~~l~~~~~~~~~~v~~~l~~~la~i~K~~w~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef 154 (1051)
++-+. +..+.+++...-.+..|..-.|||.|| +.++-|.+.++.++.++..-++..|.++..|.
T Consensus 96 l~~l~----~sn~ki~~~vay~is~Ia~~D~Pd~Wp--Elv~~i~~~l~~~n~n~i~~am~vL~el~~ev 159 (1005)
T KOG2274|consen 96 LNLLD----DSNSKIRSAVAYAISSIAAVDYPDEWP--ELVPFILKLLSSGNENSIHGAMRVLAELSDEV 159 (1005)
T ss_pred Hhhhh----ccccccchHHHHHHHHHHhccCchhhH--HHHHHHHHHHhccchhhhhhHHHHHHHHHHHH
Confidence 88876 345678899999999999999999998 77888888875556666666677777777664
No 19
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.32 E-value=19 Score=41.61 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.3
Q ss_pred cccHHHHHHHHHHHHHHhHHHHhc
Q 001571 533 ELSKQRLDRAILTFFQHFRKSYVG 556 (1051)
Q Consensus 533 ~~s~~~l~~a~l~fl~~~~~~yl~ 556 (1051)
..|+| +.++++|++-.|.-+|+.
T Consensus 356 i~s~p-~~~~lmkaLvl~gfa~~d 378 (748)
T KOG4541|consen 356 IFSPP-LMEALMKALVLWGFAYLD 378 (748)
T ss_pred ccCch-HHHHHHHHHHHHHHHHhh
Confidence 45545 999999999999999985
No 20
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=89.44 E-value=58 Score=39.49 Aligned_cols=133 Identities=16% Similarity=0.150 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHHHhhccCcccHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh-------ccCCHHHHHHHHHHHHHHHHh
Q 001571 19 DSVERAHAENTLKCFSVNTDYISQCQFILDNA-LTPYALMLASSSLLKQVTE-------HSLALQLRLDIRNYLINYLAK 90 (1051)
Q Consensus 19 ~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S-~~~~~~f~a~~~L~~~i~~-------~~l~~~~r~~lr~~ll~~l~~ 90 (1051)
|+..|..||+.|.++...|...-.|-+|+... -...++--|+--+++.|.| ...+++++.+.|.|+.+-+..
T Consensus 16 da~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~lienil~ 95 (970)
T COG5656 16 DAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYLIENILD 95 (970)
T ss_pred CcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHHHHHHHH
Confidence 66789999999999999999999999999776 5789999999999999886 456778999999999999887
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhccCC-ChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhc
Q 001571 91 RGPELQSFVTASLIQLLCRLTKFGWFD-DDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEM 154 (1051)
Q Consensus 91 ~~~~~~~~v~~~l~~~la~i~K~~w~~-~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef 154 (1051)
....-+.-.++.+...+..|.--.|+. -|+ +.+....++.++...+...||..+.++-.-+
T Consensus 96 v~l~sp~~tr~~l~ail~~I~seD~ps~~wg---l~p~~~nll~s~ea~~vy~gLlcl~elfkay 157 (970)
T COG5656 96 VFLYSPEVTRTALNAILVNIFSEDKPSDLWG---LFPKAANLLRSSEANHVYTGLLCLEELFKAY 157 (970)
T ss_pred HHhcCCchHHHHHHHHHHHhccccCchhhcc---cchHHHHhhcccchhHHHHHHHHHHHHHHHH
Confidence 766666677778888999999999994 475 5566667775556678899998888876554
No 21
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=80.43 E-value=1.3e+02 Score=35.50 Aligned_cols=107 Identities=17% Similarity=0.148 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHHHHHhhccCcccHHH----HHHHHhcCCChhHHHHHHHHHHHHHhh-------------ccCCHHHHHH
Q 001571 17 SQDSVERAHAENTLKCFSVNTDYISQ----CQFILDNALTPYALMLASSSLLKQVTE-------------HSLALQLRLD 79 (1051)
Q Consensus 17 ~~~~~~r~~Ae~~L~~f~~~~~~~~~----~~~iL~~S~~~~~~f~a~~~L~~~i~~-------------~~l~~~~r~~ 79 (1051)
+||+..|..||+.|.++++ .|..++ .+-+-+.-+++|.++.|.-+|++.+.. -.++.+.|.+
T Consensus 16 spD~n~rl~aE~ql~~l~~-~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~q 94 (858)
T COG5215 16 SPDPNARLRAEAQLLELQS-GDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQ 94 (858)
T ss_pred CCCCCccccHHHHHHHhcc-ccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHH
Confidence 4566789999999999975 443332 233335568899999999999999762 2345556666
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCC-hhhhhHHHHHHH
Q 001571 80 IRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDD-DRFRDLVKESTN 130 (1051)
Q Consensus 80 lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~w~~~-~~~~~~i~~i~~ 130 (1051)
+|.-.+.-+ .+.++-..+...+++|.|.+.+-|.. || .+++++..
T Consensus 95 vK~~al~aL----~s~epr~~~~Aaql~aaIA~~Elp~~~wp--~lm~~mv~ 140 (858)
T COG5215 95 VKGMALRAL----KSPEPRFCTMAAQLLAAIARMELPNSLWP--GLMEEMVR 140 (858)
T ss_pred HHHHHHHHh----cCCccHHHHHHHHHHHHHHHhhCccccch--HHHHHHHH
Confidence 666555554 34456677888999999999988865 66 55555543
No 22
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.67 E-value=39 Score=40.33 Aligned_cols=273 Identities=15% Similarity=0.216 Sum_probs=134.9
Q ss_pred HHhhhh---cCCCchHHHHHHHHHHHHhccccceeccCCCcchhhhHHHHHHHHHHHHHhhcCCC--CchhhHhhhhhhH
Q 001571 741 KGISHW---TDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLP--NAADIYAYKYKGM 815 (1051)
Q Consensus 741 ~l~~~y---~~~~~v~~~iLkl~~e~~~n~~~ri~f~~~s~~~~~lf~~~~~~~~~y~~~~~~~~--~~~~~~~~~~k~l 815 (1051)
.+++.| +++..=.-|+|+.+..++..-. -.|. |-+--+|+-|.++++...+...... +.-+.++.. -+
T Consensus 564 PLi~KW~~lsd~DKdLfPLLEClSsia~AL~--~gF~---P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkd--fi 636 (885)
T KOG2023|consen 564 PLIEKWELLSDSDKDLFPLLECLSSIASALG--VGFL---PYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKD--FI 636 (885)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHHHHHHh--cccc---ccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcc--eE
Confidence 444555 3444445689999999887532 2332 2233488888888886544333221 111111111 12
Q ss_pred HHHHHHHHHhhcCCccccccccccCCCcHHHHHHHHHHhhhccChhhHhhhHhhHHHHHHHHHHHHhhhHHhhhcCCHHH
Q 001571 816 WICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNT 895 (1051)
Q Consensus 816 ~~~l~il~~~l~~~~vnfg~~~~y~D~~~~~~l~~~l~~~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~ 895 (1051)
...+.+++-+..|-- =++-.+- +-.++....++|+.. .-|+.|..-|.|+.-++..|++.+.-.-++
T Consensus 637 I~sLDL~SGLaegLg--~~ie~Lv---a~snl~~lll~C~~D-------~~peVRQS~FALLGDltk~c~~~v~p~~~~- 703 (885)
T KOG2023|consen 637 IVSLDLLSGLAEGLG--SHIEPLV---AQSNLLDLLLQCLQD-------EVPEVRQSAFALLGDLTKACFEHVIPNLAD- 703 (885)
T ss_pred EEeHHHHhHHHHHhh--hchHHHh---hhccHHHHHHHHhcc-------CChHHHHHHHHHHHHHHHHHHHhccchHHH-
Confidence 223444444433200 0000000 011244444554332 348999999999999999998876633222
Q ss_pred HHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHHhhc---------------cCCCCCC---hHHHHHHHHHhhCCCc
Q 001571 896 FMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNIT---------------MGEAPTS---PAAINLARHIVECPTL 957 (1051)
Q Consensus 896 f~~l~~~l~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~---------------~~~~~~~---~~~~~l~~~~~~~~~~ 957 (1051)
|..++. .-+.....+++.+++-++..++--...+++ +...+.+ ..+.-+.++-.-+|+.
T Consensus 704 fl~~lg---~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~ 780 (885)
T KOG2023|consen 704 FLPILG---ANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEE 780 (885)
T ss_pred HHHHHh---hcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHh
Confidence 333332 344444556777777777777655544311 1111000 0000011111112322
Q ss_pred H----HHHHHHHHHHHh-ccCCCchhhchhhhHHHHhcCHHHHHHHH---HHHHhcCChhhHHHHHHHHHHHHhhhhccc
Q 001571 958 F----PEILKTLFEIVL-FEDCGNQWSLSRPMLSLILISEQVFSDLK---AQILTSQPVDQHQRLSVCFDKLMADVARSL 1029 (1051)
Q Consensus 958 ~----~~~l~~~~~~ll-~~~~~~~~~~s~~L~~li~~~~~~f~~l~---~~li~~q~~~~~~~l~~af~~L~~~i~~~l 1029 (1051)
+ .++++--+..+= -.|...--+|=+-+...|-++|..+..-. ...+++-. .-...++.-|.+.+.|-..-.
T Consensus 781 vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~-np~~~l~~~f~kiL~g~k~qv 859 (885)
T KOG2023|consen 781 VAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWS-NPEDDLRDEFYKILQGFKNQV 859 (885)
T ss_pred cchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhccc-ChHHHHHHHHHHHHHHHHHHh
Confidence 2 233333222221 11221112677888888999998766554 34455543 222888888888887755545
Q ss_pred ChhhHHHH
Q 001571 1030 DSKNRDKF 1037 (1051)
Q Consensus 1030 ~~~nr~~F 1037 (1051)
...|=.+|
T Consensus 860 g~~nW~~~ 867 (885)
T KOG2023|consen 860 GKINWQRF 867 (885)
T ss_pred hhhhHHHH
Confidence 55555555
No 23
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.69 E-value=2.3e+02 Score=34.85 Aligned_cols=261 Identities=16% Similarity=0.217 Sum_probs=141.6
Q ss_pred HHHHHHHHhhcchHHHHHHhhhhcCCCchHHHHHHHHHHHHhccccceec------cCCC-cchhhhHHHHHH-HHHHHH
Q 001571 724 YGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTF------DSSS-PNGILLFREVSK-LIVAYG 795 (1051)
Q Consensus 724 ~~~lf~~i~p~~~~~~~~l~~~y~~~~~v~~~iLkl~~e~~~n~~~ri~f------~~~s-~~~~~lf~~~~~-~~~~y~ 795 (1051)
|..+-.++.+.++.+....+ +.++++|...-..|.+.+++-... +.+ +... |.....-+-..+ ++-...
T Consensus 249 Y~~m~~yM~~alfaitl~am--ks~~deValQaiEFWsticeEEiD-~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll 325 (859)
T KOG1241|consen 249 YEFMEPYMEQALFAITLAAM--KSDNDEVALQAIEFWSTICEEEID-LAIEYGEAVDQGLPPSSKYFARQALQDVVPVLL 325 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHH
Confidence 34444456666777777777 478899999999999988864311 111 0111 111111111111 111111
Q ss_pred HhhcCCCCchhhHhhh-hhhHHHHHHHHHHhhcCCcccc--cccc--ccC-CCcHHHHHHHHHHhhhccChhhHhhhHhh
Q 001571 796 SRVLSLPNAADIYAYK-YKGMWICFTILARALAGNYVNF--GVFE--LYG-DRALSDALDIALKMTLSIPLADILAFRKL 869 (1051)
Q Consensus 796 ~~~~~~~~~~~~~~~~-~k~l~~~l~il~~~l~~~~vnf--g~~~--~y~-D~~~~~~l~~~l~~~l~ip~~dl~~yPkl 869 (1051)
+.+..-+...+.++|. .|--..|+.++..+...+.+|- +..+ +-+ |..-.++..+.|...+.=|..+-+++ ..
T Consensus 326 ~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~-iV 404 (859)
T KOG1241|consen 326 ELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTP-IV 404 (859)
T ss_pred HHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhH-HH
Confidence 1111111112222232 4567789999999999888872 2221 222 33344555555555444444332221 11
Q ss_pred HHHHHHHHHHH------------------HhhhHHhhhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHH
Q 001571 870 TKAYFAFLEVL------------------FSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFN 931 (1051)
Q Consensus 870 ~~~~f~ll~~~------------------~~~~~~~l~~l~~~~f~~l~~~l~~gl~~~~~~i~~~~~~~l~~l~~~~~~ 931 (1051)
-.+.=.++..+ ++..| -+..|.+....++.++..||+. .+-++..||-++-+|+..+|.
T Consensus 405 ~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~--e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~e 481 (859)
T KOG1241|consen 405 IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP--EAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYE 481 (859)
T ss_pred hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch--hhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHH
Confidence 11111112222 22223 2234777888999999999976 567999999999999999998
Q ss_pred hhccCCCCCChHHHHHHHHHhhCCCcHHHHHHHHHHHHhccCC---CchhhchhhhHHHHhcCHHHHHHHHHHHH
Q 001571 932 NITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDC---GNQWSLSRPMLSLILISEQVFSDLKAQIL 1003 (1051)
Q Consensus 932 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~~---~~~~~~s~~L~~li~~~~~~f~~l~~~li 1003 (1051)
....... +.|. ..+|..++..++..-=..|. +..-++=.+|-.+|.+.|+.+...+.++.
T Consensus 482 A~~s~~q-t~~~-----------t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~ 544 (859)
T KOG1241|consen 482 AAVSNGQ-TDPA-----------TPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLT 544 (859)
T ss_pred hccCCCC-CCcc-----------chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 6644311 1111 13455566666554433231 11226668899999999988777765544
No 24
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=62.40 E-value=3.1e+02 Score=32.11 Aligned_cols=111 Identities=18% Similarity=0.303 Sum_probs=53.2
Q ss_pred cccccchhHHHHHHHHHHH-hc-cCChHHHHHhhHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHhhHHhhhccchh
Q 001571 646 EYRCSRSRTTFYYTIGWLI-FM-EESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRT 723 (1051)
Q Consensus 646 ~~~~~~~r~~~y~al~~~~-~~-~~~~~~~~~~l~p~~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~l~Gi~~a~~~~~~ 723 (1051)
.|.+++.-+-++|++|-++ +. +...+....|-..+--.|..|.+++...| -|-+=+ |+..+-+++. +..-...
T Consensus 82 NPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF-~PYvfQ-Ila~Lle~~~---~~~~p~~ 156 (435)
T PF03378_consen 82 NPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEF-IPYVFQ-ILAQLLELRP---SSPLPDA 156 (435)
T ss_dssp S---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTT-HHHHHH-HHHHHHHHSS-----S--TT
T ss_pred CCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHcCC---CCCCcHH
Confidence 3777888889999999987 32 22333233333333333444444432333 222222 3333333332 1111234
Q ss_pred HHHHHHHHhhcchHHHHHHhhhhcCCCchHHHHHHHHHHHHhccccce
Q 001571 724 YGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRL 771 (1051)
Q Consensus 724 ~~~lf~~i~p~~~~~~~~l~~~y~~~~~v~~~iLkl~~e~~~n~~~ri 771 (1051)
|..+|..++.. ..| ..+.-+.++.|++..++......+
T Consensus 157 y~~L~~~Ll~p---------~lW-e~~gniPalvrLL~a~i~k~~~~i 194 (435)
T PF03378_consen 157 YKQLFPPLLSP---------ALW-ERRGNIPALVRLLQAYIKKDPSFI 194 (435)
T ss_dssp TGGGHHHHTSG---------GGG-GSTTTHHHHHHHHHHHHHHHGGG-
T ss_pred HHHHHHHHcCc---------chh-ccCCCcCcHHHHHHHHHHhCchhh
Confidence 55555444322 235 455667899999999998655444
No 25
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=61.88 E-value=1.6e+02 Score=32.73 Aligned_cols=172 Identities=13% Similarity=0.119 Sum_probs=81.7
Q ss_pred HHHHhhccC--cccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 001571 28 NTLKCFSVN--TDYISQCQFILDNALTPYALMLASSSLLKQVTE-HSLALQLRLDIRNYLINYLAKRGPELQSFVTASLI 104 (1051)
Q Consensus 28 ~~L~~f~~~--~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~-~~l~~~~r~~lr~~ll~~l~~~~~~~~~~v~~~l~ 104 (1051)
+.+..+... +++|.....+|+++ +.|+.-.|+..|..++.. +.-......++-.++++++.+.....+.-+..-.+
T Consensus 93 ~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av 171 (312)
T PF03224_consen 93 ELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAV 171 (312)
T ss_dssp HHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHH
T ss_pred HHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHH
Confidence 344454432 23677777766655 999999999999999886 33333323566688888887753333333445566
Q ss_pred HHHHHHHhhccCCC--hhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCCCCCcchHHhHhhhhhcchhchHHHH
Q 001571 105 QLLCRLTKFGWFDD--DRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIF 182 (1051)
Q Consensus 105 ~~la~i~K~~w~~~--~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~~~~~~~~~~~hrk~~~~f~~~~L~~if 182 (1051)
++++.+++..=.-. |. .+.++.+...+..........|++++=..+..+=- +.+..+....+.+.. ++
T Consensus 172 ~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWl------LSF~~~~~~~~~~~~---~i 241 (312)
T PF03224_consen 172 QCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWL------LSFEPEIAEELNKKY---LI 241 (312)
T ss_dssp HHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHHHHHHHHHH------HTTSHHHHHHHHTTS---HH
T ss_pred HHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH------HhcCHHHHHHHhccc---hH
Confidence 77777776321000 11 13344444444111112223333333333333210 122233333444443 55
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhHhcc
Q 001571 183 QISLTSLGQLKSDVASRLQELALSLCLKCLS 213 (1051)
Q Consensus 183 ~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Ls 213 (1051)
...+.+++...+ ++++.-++.++.++++
T Consensus 242 ~~L~~i~~~~~K---EKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 242 PLLADILKDSIK---EKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHHHHHHHH--S---HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhccc---chHHHHHHHHHHHHHh
Confidence 566666665544 4666667777777763
No 26
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=57.82 E-value=3.6e+02 Score=31.38 Aligned_cols=209 Identities=16% Similarity=0.144 Sum_probs=100.4
Q ss_pred hcCCChhHHHHHHHHHHHHHhhccCCHHH-HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh----hccCCChhhh
Q 001571 48 DNALTPYALMLASSSLLKQVTEHSLALQL-RLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTK----FGWFDDDRFR 122 (1051)
Q Consensus 48 ~~S~~~~~~f~a~~~L~~~i~~~~l~~~~-r~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K----~~w~~~~~~~ 122 (1051)
.++.+++.+-.+++.+--++++ ++.++ -.++-+.+.+.+ ....+.-.+.+...+++-|+| |+-+. ..
T Consensus 199 ~~~~~~~~~~~~~~~la~LvNK--~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~---~~ 270 (415)
T PF12460_consen 199 LSSEDEFSRLAALQLLASLVNK--WPDDDDLDEFLDSLLQSI---SSSEDSELRPQALEILIWITKALVMRGHPL---AT 270 (415)
T ss_pred HcCCChHHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHhhh---cccCCcchhHHHHHHHHHHHHHHHHcCCch---HH
Confidence 3344455666666655555554 22222 222222222222 111222233344455555555 44322 22
Q ss_pred hHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCCCCCcchHHhHhhhhhcchhchHHHHHHHHHHHHhhhhhhHHHHHH
Q 001571 123 DLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQE 202 (1051)
Q Consensus 123 ~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~~~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~ 202 (1051)
.+++.+.+.+. +++....+-+-+..++.+... -++...|--+|.-++ +++|...+..|-+...+.....-.
T Consensus 271 ~~~~~L~~lL~--~~~~g~~aA~~f~il~~d~~~---~l~~~~~a~vklLyk----QR~F~~~~p~L~~~~~~~~~~~k~ 341 (415)
T PF12460_consen 271 ELLDKLLELLS--SPELGQQAAKAFGILLSDSDD---VLNKENHANVKLLYK----QRFFTQVLPKLLEGFKEADDEIKS 341 (415)
T ss_pred HHHHHHHHHhC--ChhhHHHHHHHHhhHhcCcHH---hcCccccchhhhHHh----HHHHHHHHHHHHHHHhhcChhhHH
Confidence 56667766663 233334444445555555211 122344555554443 566666665554432221111222
Q ss_pred HHHHHHhHhccccccccCCCCCccccccccCCCCccccccCccHHHHHHHHHhhcCCcchHHHHHHHHHHhcccccCCCC
Q 001571 203 LALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTN 282 (1051)
Q Consensus 203 ~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~p~~W~~~l~~~~~l~llf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~ 282 (1051)
..|..+..+|.+.+..-...+- ++++.++.+-...+++.+...++++|..+.. .+
T Consensus 342 ~yL~ALs~ll~~vP~~vl~~~l-------------------~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~------~~ 396 (415)
T PF12460_consen 342 NYLTALSHLLKNVPKSVLLPEL-------------------PTLLPLLLQSLSLPDADVLLSSLETLKMILE------EA 396 (415)
T ss_pred HHHHHHHHHHhhCCHHHHHHHH-------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH------cC
Confidence 3444445555554432211110 4577777777666667788888888887764 22
Q ss_pred hHHHHHHHHHHHHHHH
Q 001571 283 DAARSKFLAHLMTGTK 298 (1051)
Q Consensus 283 ~~~~~~~l~~~l~~~~ 298 (1051)
++.-..|+..++..+.
T Consensus 397 ~~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 397 PELISEHLSSLIPRLL 412 (415)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445567777776554
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=43.80 E-value=2.2e+02 Score=34.17 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=79.9
Q ss_pred CCCHHHHHHHHHHHHhhc-cCcccHHHHHHHHhc---CCChhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhcC
Q 001571 17 SQDSVERAHAENTLKCFS-VNTDYISQCQFILDN---ALTPYALMLASSSLLKQVTEHSLALQLRLDIRNYLINYLAKRG 92 (1051)
Q Consensus 17 ~~~~~~r~~Ae~~L~~f~-~~~~~~~~~~~iL~~---S~~~~~~f~a~~~L~~~i~~~~l~~~~r~~lr~~ll~~l~~~~ 92 (1051)
+++...|+-+--.+..+. ++|+....+-.-|.+ +.|++++-.|+++|-+.. +++-...+-..+.+.+..
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~~~l~~~v~~ll~~-- 125 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEMAEPLIPDVIKLLSD-- 125 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHHS--
T ss_pred CCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccchhhHHHHHHHHHhcC--
Confidence 456667777777776666 456644444444433 578899999888887653 334444455555555542
Q ss_pred CCchHHHHHHHHHHHHHHHhhccCCChhhhh-HHHHHHHHHhccCchhHHHHHHHHHHH
Q 001571 93 PELQSFVTASLIQLLCRLTKFGWFDDDRFRD-LVKESTNFLSQATSDHYAIGLKILNQL 150 (1051)
Q Consensus 93 ~~~~~~v~~~l~~~la~i~K~~w~~~~~~~~-~i~~i~~~l~~~~~~~~~~gl~lL~~l 150 (1051)
..++||.+.+.+++.+.+. .|+.- +. +++.+.+.+...++.....++.++.++
T Consensus 126 --~~~~VRk~A~~~l~~i~~~-~p~~~--~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 126 --PSPYVRKKAALALLKIYRK-DPDLV--EDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp --SSHHHHHHHHHHHHHHHHH-CHCCH--HGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred --CchHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 3459999999999999998 33332 23 688888888545555666677677666
No 28
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=40.69 E-value=8.6e+02 Score=30.74 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHhhhHHhhhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHHhhccCCCCCChHHHHH
Q 001571 868 KLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINL 947 (1051)
Q Consensus 868 kl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~~l~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l 947 (1051)
-++..++.+...-. ...-....+..+=+++...+.+.+++.++.-+.++..++.-.-=..++...+..|...+.
T Consensus 417 ~l~~~~~~l~~~~~------~~~~~~~~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 490 (727)
T PF12726_consen 417 SLCEESQALLRGKP------LQPAVSRISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQF 490 (727)
T ss_pred HHHHHHHHHhcCCC------cCCcchhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcccccCcchHHHHH
Confidence 35666666654411 111122456666777777777888888877777776666543211112111222333222
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHhccCCCc--------hhhchhhhHHHHhcCHHHHHHHHHHHHhc---CC---hhhHHH
Q 001571 948 ARHIVECPTLFPEILKTLFEIVLFEDCGN--------QWSLSRPMLSLILISEQVFSDLKAQILTS---QP---VDQHQR 1013 (1051)
Q Consensus 948 ~~~~~~~~~~~~~~l~~~~~~ll~~~~~~--------~~~~s~~L~~li~~~~~~f~~l~~~li~~---q~---~~~~~~ 1013 (1051)
.+.++.--+.+.++|. -+ .+++. +-.+++++.+++..-.+.-.+-+.+++.+ +. +..++-
T Consensus 491 N~~~~~~~~~~~~il~----rl--s~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~l 564 (727)
T PF12726_consen 491 NKSLGQITDLISQILE----RL--SDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQAL 564 (727)
T ss_pred HHHHHHHHHHHHHHHH----HH--hcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 2222221112222221 11 11111 11467888888855444444444445444 11 334455
Q ss_pred HHHHHHHHHhhhhcccChhhHHHHH
Q 001571 1014 LSVCFDKLMADVARSLDSKNRDKFT 1038 (1051)
Q Consensus 1014 l~~af~~L~~~i~~~l~~~nr~~F~ 1038 (1051)
+...|..-+.++..++++-.+-++.
T Consensus 565 l~~~~~~tL~ai~~~l~~~~~~~~~ 589 (727)
T PF12726_consen 565 LQSNFSPTLSAINWSLRQLTKLKFF 589 (727)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhhhh
Confidence 5555555555677666666665553
No 29
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=40.51 E-value=98 Score=26.48 Aligned_cols=87 Identities=22% Similarity=0.192 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 001571 7 LEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQLRLDIRNYLIN 86 (1051)
Q Consensus 7 lE~~~~~ly~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~~l~~~~r~~lr~~ll~ 86 (1051)
++.+.+.+-+.+++..|..|=..|.++. +++..+.....| ++.++.++..|+.+|.+. .. .+....+.+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i------~~---~~~~~~L~~ 69 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELL-KDEDPMVRRAAARALGRI------GD---PEAIPALIK 69 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC------HH---HHTHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh------CC---HHHHHHHHH
Confidence 4567777767778888999999998775 578899888888 679999999999888533 11 223344444
Q ss_pred HHHhcCCCchHHHHHHHHHHH
Q 001571 87 YLAKRGPELQSFVTASLIQLL 107 (1051)
Q Consensus 87 ~l~~~~~~~~~~v~~~l~~~l 107 (1051)
.+.+ +....|+......+
T Consensus 70 ~l~~---~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 70 LLQD---DDDEVVREAAAEAL 87 (88)
T ss_dssp HHTC----SSHHHHHHHHHHH
T ss_pred HHcC---CCcHHHHHHHHhhc
Confidence 4322 22456666665554
No 30
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=38.28 E-value=3.8e+02 Score=27.88 Aligned_cols=105 Identities=13% Similarity=0.193 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHHHHhhccCCCCCChHHHHHHHHHhhCCCcHHHHHHHHHHHHhccCCCc
Q 001571 897 MHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGN 976 (1051)
Q Consensus 897 ~~l~~~l~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~~~~ 976 (1051)
..++..+...++...+.|+..+|.++..++...-+... |.. ..++..++..+ .+.+.
T Consensus 52 ~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~-------~~~--------------~~~l~~Ll~~~--~~~~~ 108 (228)
T PF12348_consen 52 RQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE-------PYA--------------DILLPPLLKKL--GDSKK 108 (228)
T ss_dssp H---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH-------HHH--------------HHHHHHHHHGG--G---H
T ss_pred HHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH-------HHH--------------HHHHHHHHHHH--ccccH
Confidence 34445677777777788999999999999887743211 221 11233333322 22221
Q ss_pred h--hhchhhhHHHHhcCH---HHHHHHHHHHHhcCChhhHHHHHHHHHHHHhh
Q 001571 977 Q--WSLSRPMLSLILISE---QVFSDLKAQILTSQPVDQHQRLSVCFDKLMAD 1024 (1051)
Q Consensus 977 ~--~~~s~~L~~li~~~~---~~f~~l~~~li~~q~~~~~~~l~~af~~L~~~ 1024 (1051)
. -++..+|..++...+ ............+-.+..|....+.+......
T Consensus 109 ~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 109 FIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEK 161 (228)
T ss_dssp HHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 1 156677777775444 22133333333333355666666666666553
No 31
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=37.22 E-value=1.1e+03 Score=34.95 Aligned_cols=116 Identities=14% Similarity=0.131 Sum_probs=71.1
Q ss_pred chhhHhhhhhhHHHHHHHHHHhhcCCccccccccccCCCcHHHHHHHHHHhhhccCh-----------------hhHhhh
Q 001571 804 AADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPL-----------------ADILAF 866 (1051)
Q Consensus 804 ~~~~~~~~~k~l~~~l~il~~~l~~~~vnfg~~~~y~D~~~~~~l~~~l~~~l~ip~-----------------~dl~~y 866 (1051)
.+..|.+.+..+-.+++.++++++| ++. +.--+.+.++|+.+|. --+-..
T Consensus 667 ~d~ly~e~lplL~~lLe~ln~l~~~----------~~s---~~mkdLfvELclTvPvRLS~Llpylp~LM~PLv~aLkgs 733 (3550)
T KOG0889|consen 667 FDSLYREVLPLLPNLLEILNHLLSS----------FHS---QGMKDLFVELCLTLPVRLSSLLPYLPLLMKPLVFALKGS 733 (3550)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhhc----------cCc---cchHHHHHHHHHhhhHHHHHhhhhhhhhhhHHHHHhcCC
Confidence 4556888888889999999999986 221 2223344444444443 333345
Q ss_pred HhhHHHHHHHHHHHHh-hhHHhhhcCCHHHHHHHHHHHHHhhcCC-ChHHHhHHHHHHHHHHHHHHHh
Q 001571 867 RKLTKAYFAFLEVLFS-SHITFILNLNTNTFMHIVGSLESGLKGL-DTNISSQCAAAVDNLAAFYFNN 932 (1051)
Q Consensus 867 Pkl~~~~f~ll~~~~~-~~~~~l~~l~~~~f~~l~~~l~~gl~~~-~~~i~~~~~~~l~~l~~~~~~~ 932 (1051)
|++..+=+.-++.... .-|+++...=...-..+|.+|-.+++-. +..++..|..++..|.++--+-
T Consensus 734 ~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rILGKlgG~NRq~ 801 (3550)
T KOG0889|consen 734 PELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRILGKLGGRNRQF 801 (3550)
T ss_pred HHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCcchhh
Confidence 7777777777665543 3355555322223344555555555554 5678888999999888766553
No 32
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=36.62 E-value=4.5e+02 Score=31.86 Aligned_cols=125 Identities=13% Similarity=0.258 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhcCCC-----hHHHhHHHHHHHHHHHHHHHhhccCCCCCChHHHHHHHHHhh---------CCCcHHHH
Q 001571 896 FMHIVGSLESGLKGLD-----TNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVE---------CPTLFPEI 961 (1051)
Q Consensus 896 f~~l~~~l~~gl~~~~-----~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~ 961 (1051)
...-+.++..||++.. .+--+.|++.+..++.++.+.+ ++.+-....++-+.+++.+ +...|.+.
T Consensus 100 ~~~~~~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h-~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~ 178 (552)
T PF14222_consen 100 AESKIELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAH-KKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEA 178 (552)
T ss_pred hHHHHHHHHhhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHH
Confidence 4456677888998864 4667789999999999998864 2211001223333333332 33478888
Q ss_pred HHHHHHHHh--ccCCCchhhchhhhHHHH-hcCHH-H----HH-HHHHHHHhcCC-hhhHHHHHHHHHHHH
Q 001571 962 LKTLFEIVL--FEDCGNQWSLSRPMLSLI-LISEQ-V----FS-DLKAQILTSQP-VDQHQRLSVCFDKLM 1022 (1051)
Q Consensus 962 l~~~~~~ll--~~~~~~~~~~s~~L~~li-~~~~~-~----f~-~l~~~li~~q~-~~~~~~l~~af~~L~ 1022 (1051)
+..+...+. ..+ ...|..+=||...+ |+.|+ . |. ++.+.+...-. ...+.-..++...|.
T Consensus 179 v~~i~~~~~~~~~K-~khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk~~r~~~l~~l~RLl 248 (552)
T PF14222_consen 179 VETIYPRAAKMMSK-PKHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDKETRPVALECLSRLL 248 (552)
T ss_pred HHHHHHHHHHHHhC-cchhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCChhhhHHHHHHHHHHH
Confidence 888776655 233 45688888888777 44443 3 33 34555554432 333444445555553
No 33
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=33.87 E-value=3.5e+02 Score=25.99 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=35.4
Q ss_pred CCChhHHHHHHHHHHHHHhh--ccCCHH-HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 001571 50 ALTPYALMLASSSLLKQVTE--HSLALQ-LRLDIRNYLINYLAKRGPELQSFVTASLIQLLC 108 (1051)
Q Consensus 50 S~~~~~~f~a~~~L~~~i~~--~~l~~~-~r~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la 108 (1051)
+.++.++..|+..|..++.+ ..+-.+ -....-+.+...+........+.|++++..++.
T Consensus 53 ~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~ 114 (140)
T PF00790_consen 53 HGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQ 114 (140)
T ss_dssp TSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHH
Confidence 48999999999999999987 222111 111233445555544422222338888877664
No 34
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=33.28 E-value=1.6e+03 Score=31.65 Aligned_cols=279 Identities=12% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHhc------CC-ChhHHHHHHHHHHHHHhhccCCHHH-------HHHHHHHHHHHHHhcCCCchHHHH---HH
Q 001571 40 ISQCQFILDN------AL-TPYALMLASSSLLKQVTEHSLALQL-------RLDIRNYLINYLAKRGPELQSFVT---AS 102 (1051)
Q Consensus 40 ~~~~~~iL~~------S~-~~~~~f~a~~~L~~~i~~~~l~~~~-------r~~lr~~ll~~l~~~~~~~~~~v~---~~ 102 (1051)
|...|.++.. ++ |..+-+||.-+|+.+-.+ .++.++ +.-|+-|..=+--+...+.-..|. .+
T Consensus 1131 W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~k-fle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~q 1209 (1780)
T PLN03076 1131 WSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMK-FLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQ 1209 (1780)
T ss_pred hHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH-hcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCCCCCcchHHhHhhhhhcchhchHHHH
Q 001571 103 LIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIF 182 (1051)
Q Consensus 103 l~~~la~i~K~~w~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~~~~~~~~~~~hrk~~~~f~~~~L~~if 182 (1051)
++...+.-+|-||. .++.=+........+.-...+...+..++.|+-+.-..+. ...|
T Consensus 1210 mI~s~~~nIkSGWk------tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~----------------~~~F 1267 (1780)
T PLN03076 1210 MVLSRVNNVKSGWK------SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETE----------------TTTF 1267 (1780)
T ss_pred HHHHHHhhhhcCcH------HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccc----------------hhHH
Q ss_pred HHHHHHHHhhhhhhH-HHHHHHHHHHHhHhccccccccCCC------------------CCccccccccCCCC----ccc
Q 001571 183 QISLTSLGQLKSDVA-SRLQELALSLCLKCLSFDFVGTSID------------------ESSEEFGTVQIPSA----WRP 239 (1051)
Q Consensus 183 ~~~~~~L~~~~~~~~-~~l~~~~L~l~~~~Lsw~f~~~~~d------------------e~~~d~~~~~~p~~----W~~ 239 (1051)
.-|+.+|.+...... ..+.-.+++++..|-..--.+.... +..++...+..... |-|
T Consensus 1268 ~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p 1347 (1780)
T PLN03076 1268 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP 1347 (1780)
T ss_pred HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHH
Q ss_pred cccCccHHHHHHHHHhhcCCcchHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHhhcCcCCCC----------
Q 001571 240 VLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLAD---------- 309 (1051)
Q Consensus 240 ~l~~~~~l~llf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~---------- 309 (1051)
++.-|-++....+++++..|++.|-++..-.|..|+. +-...-+..++--+.+.+........
T Consensus 1348 ------LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~-~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~ 1420 (1780)
T PLN03076 1348 ------LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSL-PLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVD 1420 (1780)
T ss_pred ------HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCH-HHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Q ss_pred ------------chhHHHHHHHHhhhhhhcchhhhhcccChHHHHHHHHHHHHH
Q 001571 310 ------------HDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLK 351 (1051)
Q Consensus 310 ------------~~~~~~~~~~l~rl~~~~~l~~l~~~~~~~~~l~~l~~ft~~ 351 (1051)
.+......+.+..+.+.| +..|. +..+.|+..+..+.++
T Consensus 1421 ~~~~~~e~~~Wl~eT~~~AL~~lvdLft~f-Fd~L~--~~L~~~l~ll~~ci~q 1471 (1780)
T PLN03076 1421 GDQGELDQDAWLYETCTLALQLVVDLFVKF-YPTVN--PLLKKVLMLLVSFIKR 1471 (1780)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHcC
No 35
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=32.93 E-value=93 Score=29.61 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHH
Q 001571 4 LAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQF 45 (1051)
Q Consensus 4 l~~lE~~~~~ly~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~ 45 (1051)
++-|..++.+||+.++.+.+.+.-.-|.+|.-+|-+|...++
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq 56 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ 56 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH
Confidence 566788999999999888888888889999999999986665
No 36
>PTZ00429 beta-adaptin; Provisional
Probab=32.53 E-value=6.7e+02 Score=31.64 Aligned_cols=126 Identities=12% Similarity=0.084 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHHhhcc-Ccc-cHHHHHHHHhc--CCChhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhcC
Q 001571 17 SQDSVERAHAENTLKCFSV-NTD-YISQCQFILDN--ALTPYALMLASSSLLKQVTEHSLALQLRLDIRNYLINYLAKRG 92 (1051)
Q Consensus 17 ~~~~~~r~~Ae~~L~~f~~-~~~-~~~~~~~iL~~--S~~~~~~f~a~~~L~~~i~~~~l~~~~r~~lr~~ll~~l~~~~ 92 (1051)
+++.+.|+-.--.+..+.+ +|+ ++-.+-.+... +.|++++=.|+.+|-.+ .. .++-+++...+.+.-
T Consensus 79 S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I------r~---~~i~e~l~~~lkk~L 149 (746)
T PTZ00429 79 STDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI------RV---SSVLEYTLEPLRRAV 149 (746)
T ss_pred CCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC------Cc---HHHHHHHHHHHHHHh
Confidence 3455556666556655553 454 33333333322 24566665555554332 11 124566777766655
Q ss_pred CCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHH
Q 001571 93 PELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVS 152 (1051)
Q Consensus 93 ~~~~~~v~~~l~~~la~i~K~~w~~~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~ 152 (1051)
.+..+|||.....+++++.+.. ++.-+...+++++..++...++....-++..|.++.+
T Consensus 150 ~D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 150 ADPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred cCCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 6677999999999999987753 2221122567788888855556666777777777754
No 37
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation []. It contains both SMC (structural maintenance of chromosomes) and non-SMC subunits. Condensin plays an important role during mitosis in the compaction and resolution of chromosomes to remove and prevent catenations that would otherwise inhibit segregation. This is thought to be acheived by the introducion of positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. During interphase condensin promotes clustering of dispersed loci into subnuclear domains and inhibits associations between homologues. In meiosis, condensin has been shown to influence the number of crossover events by regulating programmed double-strand breaks. Roles in gene regulation and lymphocyte development have also been defined. Condensin subunit 1 (known as Cnd1 in Schizosaccharomyces pombe (Fission yeast), and XCAP-D2 in Xenopus laevis laevis) represents one of the non-SMC subunits in the complex. This subunit is phosphorylated at several sites by Cdc2. This phosphorylation process increases the supercoiling activity of condensin [, ]. This entry represents the conserved N-terminal domain of Cnd1.
Probab=31.73 E-value=83 Score=31.51 Aligned_cols=68 Identities=13% Similarity=0.249 Sum_probs=52.4
Q ss_pred chHHHHHHHHHHhccc-ccCCCChHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHhhhhhhcc
Q 001571 261 LSKEALECLVRLASVR-RSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNYHEYCRLLGRFRVNYQ 328 (1051)
Q Consensus 261 l~~~~l~cL~~l~sl~-~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~~~~~~~~~~~l~rl~~~~~ 328 (1051)
-...++++|.++..+. .-+|....++..|+.-+.+-+..+++++..+.+.+.-..++++|+-.+..|.
T Consensus 97 q~e~~L~~l~~~L~l~L~rlw~~~~~~e~Fi~l~~r~~y~llE~~~~~K~~~ik~~if~il~~~vk~h~ 165 (171)
T PF12922_consen 97 QRERILEALIKVLQLDLSRLWRTTPEEEEFISLFTRPCYKLLENPEIVKNKSIKDAIFRILGTAVKKHN 165 (171)
T ss_pred HHHHHHHHHHHHHcCcHHHHcCCCCchHHHHHHHHHHHHHHHcChHhhccHHHHHHHHHHHHHHHHHcc
Confidence 4567778888887776 4578887889999998888888889887666666666568888888887774
No 38
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=30.60 E-value=1.8e+02 Score=24.72 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhccCcccHHHHHHHHhcCCChhHHHHHHHHH
Q 001571 7 LEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSL 63 (1051)
Q Consensus 7 lE~~~~~ly~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L 63 (1051)
++.+.+.+ ..+++..|.+|=..|..+. +++.++.....++++.+..++..|+.+|
T Consensus 33 ~~~L~~~l-~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 33 IPALIELL-KDEDPMVRRAAARALGRIG-DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHH-TSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 44455444 5677888999999999886 5889999999999999988899988876
No 39
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=30.58 E-value=1.2e+02 Score=30.22 Aligned_cols=55 Identities=25% Similarity=0.454 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHhhhHHhhhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHH
Q 001571 868 KLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFY 929 (1051)
Q Consensus 868 kl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~~l~~gl~~~~~~i~~~~~~~l~~l~~~~ 929 (1051)
++|+.-|+++..+.+.++..+ + ...+++.+..|++. +.+|-..|+..+..++...
T Consensus 42 elRK~ayE~lytlLd~~~~~~---~---~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~ 96 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRI---D---ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA 96 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHhC---C---HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC
Confidence 478889999888888655433 2 45668899999998 9999999999888886544
No 40
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=29.39 E-value=1.3e+02 Score=23.31 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=38.0
Q ss_pred HhhHHHHHHHHHHHHhhhHHhhhcCCHHHHHHHHHHHHHhhcCCChHHHhHHHHHHHHH
Q 001571 867 RKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNL 925 (1051)
Q Consensus 867 Pkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~l~~~l~~gl~~~~~~i~~~~~~~l~~l 925 (1051)
|.++.+-...|..+.+.+++.+. +....++..+...++..+.+|-..++.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~----~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQ----PYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHH----HHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 44555555555555555555433 25678888888999988889988888887654
No 41
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=28.96 E-value=9.2e+02 Score=27.57 Aligned_cols=166 Identities=10% Similarity=0.096 Sum_probs=74.6
Q ss_pred hhHHHHHHHhHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHHhhcccccCCCcccccccchHHHHHHHHHhhh
Q 001571 442 ENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINV 521 (1051)
Q Consensus 442 ~~t~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~l 521 (1051)
+.+++-++++|....+.+.+ +..++.++..+.+-+.-++-|.=++..-+ .|..-.+.+ +..+.....++..
T Consensus 23 ~~~~~pll~l~~~~~~~i~~----~~~~~~~l~~~~~~l~lilKiF~sL~~~D----LPe~fed~l-~~wm~~f~~~L~~ 93 (370)
T PF08506_consen 23 DKFAEPLLELFKQTDQLIEA----NANNAASLKVLFEMLKLILKIFYSLNCQD----LPEFFEDNL-SEWMEIFHKYLTY 93 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----TTT-HHHHHHHHHHHHHHHHHHHHHHSSS------HHHHHTH-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHHHccCc----CcHHHHHHH-HHHHHHHHHHHcC
Confidence 34445555666665544322 23344555555534333333332332211 221111223 2344445556655
Q ss_pred ccccccccccc-cccHHHHHHHHHHHHHHhHHHHhccCCccchHHHHHHHHHhCCCChHHHHHHHHHHHHhhccCCCC--
Q 001571 522 TDSGLHSQRYC-ELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTE-- 598 (1051)
Q Consensus 522 ~~~~~~~~~~~-~~s~~~l~~a~l~fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~d~~~~~~~~l~~i~~~L~~~~~-- 598 (1051)
..+......-. .+..+++-..++.-+++|..-|- ..+ ...+..|++-++..|..|+.
T Consensus 94 ~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~--------e~f------------~~~l~~fv~~vw~lL~~~~~~~ 153 (370)
T PF08506_consen 94 PNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYE--------EEF------------EPFLPTFVQAVWNLLTKISQQP 153 (370)
T ss_dssp -SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-H--------HHH------------HHHHHHHHHHHHHHHTC--SSG
T ss_pred CCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHH--------HHH------------HHHHHHHHHHHHHHHHHhhhcc
Confidence 54444311111 11124455555555555544441 111 14555566667766665553
Q ss_pred -chHHHHHHHHHHHHHhcccchhhHHhcchhHHHHHHhc
Q 001571 599 -SQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANH 636 (1051)
Q Consensus 599 -~~~v~~~~~~Ll~~l~~~~~~~~~l~~~~~~~~l~~~~ 636 (1051)
.+.++..+++.|..++++.........-|.++.|++..
T Consensus 154 ~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~V 192 (370)
T PF08506_consen 154 KYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKV 192 (370)
T ss_dssp GGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHh
Confidence 35688889999988777643333333445666666654
No 42
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=28.32 E-value=87 Score=21.13 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=24.0
Q ss_pred HHHHHHHhhcCCChHHHhHHHHHHHHHHHH
Q 001571 899 IVGSLESGLKGLDTNISSQCAAAVDNLAAF 928 (1051)
Q Consensus 899 l~~~l~~gl~~~~~~i~~~~~~~l~~l~~~ 928 (1051)
++..+..++++.+++|-..++.++..++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 355677889999999999999999988764
No 43
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=24.73 E-value=1.9e+03 Score=29.86 Aligned_cols=207 Identities=10% Similarity=0.110 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHhcccchhhHHhcchhHHHHHHhcccCCCCCcccccccchhHHHHHH
Q 001571 580 LLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYT 659 (1051)
Q Consensus 580 ~~~~~~l~~i~~~L~~~~~~~~v~~~~~~Ll~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~l~~~~~~~~r~~~y~a 659 (1051)
.-.|.+++.|+..|. .....+-.+|++.+..++.. -..++..|.++.-+..- +.. .....|-..-+.
T Consensus 812 ~sfD~yLk~Il~~l~--e~~ialRtkAlKclS~ive~---Dp~vL~~~dvq~~Vh~R------~~D--ssasVREAaldL 878 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVLG--ENAIALRTKALKCLSMIVEA---DPSVLSRPDVQEAVHGR------LND--SSASVREAALDL 878 (1692)
T ss_pred HhhHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhc---ChHhhcCHHHHHHHHHh------hcc--chhHHHHHHHHH
Confidence 456778888887776 23344566688888888774 34456677777655332 221 113467777788
Q ss_pred HHHHHhccCChHHHHHhhHHHHHHHHHhhcCCCcccc-cHHHHHHHHHHHHHHhhHHhhhccchhHHHHHHHHhhcchHH
Q 001571 660 IGWLIFMEESPVKFKSSMDPLLQVFISLESTPDSMFR-TDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPL 738 (1051)
Q Consensus 660 l~~~~~~~~~~~~~~~~l~p~~~~~~~l~~~~~~~~~-~~~~~~~l~~ll~~l~Gi~~a~~~~~~~~~lf~~i~p~~~~~ 738 (1051)
+|+.+... +++..+| |++|+.+ +.. .-.||+++|.++|+. |.+... | +...++
T Consensus 879 vGrfvl~~--~e~~~qy-------Y~~i~er---IlDtgvsVRKRvIKIlrdi---c~e~pd---f--------~~i~~~ 932 (1692)
T KOG1020|consen 879 VGRFVLSI--PELIFQY-------YDQIIER---ILDTGVSVRKRVIKILRDI---CEETPD---F--------SKIVDM 932 (1692)
T ss_pred Hhhhhhcc--HHHHHHH-------HHHHHhh---cCCCchhHHHHHHHHHHHH---HHhCCC---h--------hhHHHH
Confidence 88866443 2233333 3333211 121 235899999887765 465543 1 112357
Q ss_pred HHHHhhhhcCCCc-hHHHHHHHHHH-HHhccccceeccCCCcchh--hhHHHHHHHHHHHH------H----hhc----C
Q 001571 739 LLKGISHWTDTPE-VTTPLLKFMAE-FVLNKAQRLTFDSSSPNGI--LLFREVSKLIVAYG------S----RVL----S 800 (1051)
Q Consensus 739 ~~~l~~~y~~~~~-v~~~iLkl~~e-~~~n~~~ri~f~~~s~~~~--~lf~~~~~~~~~y~------~----~~~----~ 800 (1051)
+.+++..-.++-. |...+.+-|-. |...-..+.+ ..|+ .++.++..+..+|. . +++ .
T Consensus 933 cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d-----~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~ 1007 (1692)
T KOG1020|consen 933 CAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVND-----QPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLL 1007 (1692)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccc-----cHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHh
Confidence 7788887766666 44433333332 2222211111 1132 35555444443331 1 111 1
Q ss_pred CCCchhhHhhhhhhHHHHHHHHHHhhcCCc
Q 001571 801 LPNAADIYAYKYKGMWICFTILARALAGNY 830 (1051)
Q Consensus 801 ~~~~~~~~~~~~k~l~~~l~il~~~l~~~~ 830 (1051)
...+....+..++.+...++++.+++....
T Consensus 1008 ~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i 1037 (1692)
T KOG1020|consen 1008 KTMKESVKPVALAKVTHVLNLLTHCLVEKI 1037 (1692)
T ss_pred hhhhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence 111122245567777788899999987543
No 44
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=24.12 E-value=1.5e+03 Score=28.32 Aligned_cols=61 Identities=8% Similarity=0.129 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHhc
Q 001571 73 ALQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQ 134 (1051)
Q Consensus 73 ~~~~r~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~w~~~~~~~~~i~~i~~~l~~ 134 (1051)
+..-+..+..|+++++.-.-.+.-.|.+++.|-.++.+ --.|.|.....+..+.+.+-+.+
T Consensus 450 ~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~-eeDfkd~~ill~aye~t~ncl~n 510 (970)
T COG5656 450 MSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI-EEDFKDNGILLEAYENTHNCLKN 510 (970)
T ss_pred CchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH-HHhcccchHHHHHHHHHHHHHhc
Confidence 44556677888999887333444579999999999999 88999986544556666655543
No 45
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=23.28 E-value=1.2e+03 Score=27.01 Aligned_cols=44 Identities=16% Similarity=0.391 Sum_probs=28.8
Q ss_pred HHHHHHHHHhccCCCchh------hchhhhHHHHhcCHHHHHHHHHHHHhc
Q 001571 961 ILKTLFEIVLFEDCGNQW------SLSRPMLSLILISEQVFSDLKAQILTS 1005 (1051)
Q Consensus 961 ~l~~~~~~ll~~~~~~~~------~~s~~L~~li~~~~~~f~~l~~~li~~ 1005 (1051)
++..++..+ +...++-| .+..++-.+.-+||+.|++..++.-+.
T Consensus 337 i~p~i~~~L-~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~~~~~~~ 386 (409)
T PF01603_consen 337 ILPIIFPAL-YRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCAQKYKEK 386 (409)
T ss_dssp HHHHHHHHH-SSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 355555554 44455556 456667777789999999988776654
No 46
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=23.23 E-value=5.2e+02 Score=23.01 Aligned_cols=109 Identities=13% Similarity=-0.016 Sum_probs=60.1
Q ss_pred ccHHHHHHHHhcCCChhHHHHHHHHHHHHHhh-ccCCHHH-HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcc
Q 001571 38 DYISQCQFILDNALTPYALMLASSSLLKQVTE-HSLALQL-RLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGW 115 (1051)
Q Consensus 38 ~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~-~~l~~~~-r~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~w 115 (1051)
+.++.+..+|.+. +++++..|+.+|.++... +.....- +.+.-..+++++.. ...-|+...+.++..+...+.
T Consensus 7 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~----~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 7 GGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS----EDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred CChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC----CCHHHHHHHHHHHHHHccCcH
Confidence 3556666677644 478888888888776543 1111111 11444566666543 245677788888888876543
Q ss_pred CCChh-h-hhHHHHHHHHHhccCchhHHHHHHHHHHHH
Q 001571 116 FDDDR-F-RDLVKESTNFLSQATSDHYAIGLKILNQLV 151 (1051)
Q Consensus 116 ~~~~~-~-~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv 151 (1051)
..... . ..+++.+.+.+...+......++.+|..+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 21111 1 134555666664444445555555555543
No 47
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=21.30 E-value=1.5e+02 Score=26.88 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhcCCChHHHhHHHHHHHHHHHHH
Q 001571 895 TFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFY 929 (1051)
Q Consensus 895 ~f~~l~~~l~~gl~~~~~~i~~~~~~~l~~l~~~~ 929 (1051)
.+..++-.+..||+|..++|-..++..|+-+..++
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~ 42 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHA 42 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHC
Confidence 45677888889999999999999999999999887
No 48
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=20.90 E-value=1.1e+03 Score=25.52 Aligned_cols=100 Identities=14% Similarity=0.160 Sum_probs=56.0
Q ss_pred CCChhHHHHHHHHHHHHHhh---ccCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCChhhhhHHH
Q 001571 50 ALTPYALMLASSSLLKQVTE---HSLALQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVK 126 (1051)
Q Consensus 50 S~~~~~~f~a~~~L~~~i~~---~~l~~~~r~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~w~~~~~~~~~i~ 126 (1051)
|.++-++--|...|...+.+ ..++.++. +.+++|..+|-.+ ..-+... ...+..++|...+.......++.
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev----~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~~~~~~~~~~~~~i~~ 83 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEV----QVLLDFFCSRLDD-HACVQPA-LKGLLALVKMKNFSPESAVKILR 83 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHH----HHHHHHHHHHhcc-HhhHHHH-HHHHHHHHhCcCCChhhHHHHHH
Confidence 45666666777777777776 34666664 5555555555322 3334444 55555566766654332223444
Q ss_pred HHHHHHh--ccCchhHHHHHHHHHHHHHhcc
Q 001571 127 ESTNFLS--QATSDHYAIGLKILNQLVSEMN 155 (1051)
Q Consensus 127 ~i~~~l~--~~~~~~~~~gl~lL~~lv~Ef~ 155 (1051)
.+.+-.. +-....+....+++..+++.+.
T Consensus 84 ~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~ 114 (262)
T PF14500_consen 84 SLFQNVDVQSLPQSTRYAVYQLLDSLLENHR 114 (262)
T ss_pred HHHHhCChhhhhHHHHHHHHHHHHHHHHHhH
Confidence 4432211 1123567888889999988764
No 49
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=20.22 E-value=9.9e+02 Score=26.00 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=88.3
Q ss_pred HHHhhccCC-ChhhhhHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCCCCCcchHHhHhhhhhcchhchHHHHHHHHH
Q 001571 109 RLTKFGWFD-DDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLT 187 (1051)
Q Consensus 109 ~i~K~~w~~-~~~~~~~i~~i~~~l~~~~~~~~~~gl~lL~~lv~Ef~~~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~ 187 (1051)
.-+++.|.+ .|+ -++.-+..++...++.....||.+|..+++...... -..++++++.++|.-++.
T Consensus 106 ~~~~~~~i~~~~~--liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~-----------~~~L~~tGl~~v~~~al~ 172 (282)
T PF10521_consen 106 SQLDRPWISQHWP--LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE-----------WDILRRTGLFSVFEDALF 172 (282)
T ss_pred hcCCcchHHHhhh--HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh-----------hHHHHHcChHHHHHHHHH
Confidence 355666654 354 466667777755567889999999999998875433 224667788887776655
Q ss_pred H-HHhh---hhh-hHHHHHHHHHHHHhHhccccccccCCCCCccccccccCCCCccccccCccHHHHHHHHHhh-c---C
Q 001571 188 S-LGQL---KSD-VASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAI-T---E 258 (1051)
Q Consensus 188 ~-L~~~---~~~-~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~p~~W~~~l~~~~~l~llf~~y~~-~---~ 258 (1051)
- |.-+ ..+ ....++..+..++..++.=.+. +++ ..+....+..+-+.++.-+.. . .
T Consensus 173 ~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~----~~~-----------~~r~~~l~~~l~e~IL~~~~~~~~~~~ 237 (282)
T PF10521_consen 173 PCLYYLPPITPEDESLELLQAAYPALLSLLKTQEN----DDS-----------NPRSTWLDKILREGILSSMEHESSFSY 237 (282)
T ss_pred HHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhcc----CCc-----------ccchHHHHHHHHHHHhhhceeccccCc
Confidence 3 3211 111 1134556665555555431110 010 001111111122222222211 2 2
Q ss_pred CcchHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHhhcCc
Q 001571 259 APLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQ 305 (1051)
Q Consensus 259 ~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~ 305 (1051)
+.++...++-+..+...=| ..-.+|+++++..+.+++.+..
T Consensus 238 ~~l~~~ll~~l~~~i~~lG------i~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 238 PRLRTVLLQQLPPIIDELG------ISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred hhHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHhcCCC
Confidence 5566666666666654211 2467788888888888777654
Done!