Query 001571
Match_columns 1051
No_of_seqs 173 out of 454
Neff 9.0
Searched_HMMs 29240
Date Tue Mar 26 16:51:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001571.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_868-872//hhsearch_pdb/001571hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gjx_A Exportin-1; transport, 1.0 1 1 500.8 72.4 899 3-1049 26-1025(1073)
2 4hat_C Exportin-1; heat repeat 1.0 1 1 475.6 76.7 906 3-1050 14-1006(1023)
3 2x19_B Importin-13; nuclear tr 1.0 1 1 386.0 68.9 881 3-1050 22-953 (963)
4 3m1i_C Exportin-1; heat repeat 1.0 1 1 352.8 78.4 902 3-1050 14-1006(1049)
5 2x1g_F Cadmus; transport prote 1.0 1 1 303.4 65.2 883 3-1051 5-966 (971)
6 3ibv_A Exportin-T; karyopherin 1.0 1 1 294.9 68.8 908 3-1051 4-978 (980)
7 3a6p_A Exportin-5; exportin-5, 1.0 1 1 238.6 61.9 597 3-686 9-682 (1204)
8 1w9c_A CRM1 protein, exportin 1.0 1 1 153.7 22.7 251 752-1049 45-317 (321)
9 4fdd_A Transportin-1; heat rep 1.0 1 1 139.8 60.2 777 2-1025 10-822 (852)
10 1wa5_C Importin alpha RE-expor 1.0 1 1 122.5 66.7 616 1-766 1-671 (960)
No 1
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=1.00 E-value=1 Score=500.78 Aligned_cols=899 Identities=15% Similarity=0.217 Sum_probs=611.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHH
Q ss_conf 4899999999982599999999999998741049421999999983089816899999999999862--26897889999
Q 001571 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1051)
Q Consensus 3 ~i~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~l 80 (1051)
+++.||+++.++|+|+ +++|++|+++|.+|+++|++|..|..||+.|++++++|||+++|++.|++ +.+|+++|.++
T Consensus 26 Dv~~Le~lv~~ly~p~-~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~L 104 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGE-GAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGI 104 (1073)
T ss_dssp SHHHHHHHHHTTTCSS-HHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 9999999999982999-999999999999987290589999999468998999999999999999764662999999999
Q ss_pred HHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999841998-----1278999999999999850268982442579999999831374048889999999997304
Q 001571 81 RNYLINYLAKRGPE-----LQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMN 155 (1051)
Q Consensus 81 r~~ll~~l~~~~~~-----~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~igl~iL~~lv~Ef~ 155 (1051)
|+++++++.+.+.+ .++.+++|+++++|.|+|++||+.|+ +++.++.+.++ .++.++..++.+|..+.+|..
T Consensus 105 R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp--~fi~dLv~~~~-~~~~~~~~~L~IL~~L~EEV~ 181 (1073)
T 3gjx_A 105 KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWP--TFISDIVGASR-TSESLCQNNMVILKLLSEEVF 181 (1073)
T ss_dssp HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCC--HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999872685323334689999999999999986833160--89999999837-998899999999999999998
Q ss_pred CCC-CCCCHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999-9964587576664111010288999999999755454688999999999857145326666877786655555688
Q 001571 156 QPN-PGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIP 234 (1051)
Q Consensus 156 ~~~-~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~p 234 (1051)
..+ ..++..+.++.+..++.. ++.|+.++..+|++... ..++..+|+++..+++|...+.
T Consensus 182 d~~~~~l~~~r~~~lk~~L~~~-~~~Il~ll~~iL~~~~~---~~lv~~~L~~L~~~~sWI~i~~--------------- 242 (1073)
T 3gjx_A 182 DFSSGQITQVKAKHLKDSMCNE-FSQIFQLCQFVMENSQN---APLVHATLETLLRFLNWIPLGY--------------- 242 (1073)
T ss_dssp TSHHHHBCHHHHHHHHHHHHHT-CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHTTTSCTHH---------------
T ss_pred HCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHCCHHH---------------
T ss_conf 5143423088999999999999-99999999987555688---7999999999999998658987---------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-------
Q ss_conf 7730001696079999999841498544999999998720024678992889999999999899985037678-------
Q 001571 235 SAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGL------- 307 (1051)
Q Consensus 235 ~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l------- 307 (1051)
+.+++++++++..+ ...+.++..|.+||.++++.+.+-+ ++.-...+..++..+..+++....+
T Consensus 243 ------i~~~~ll~~L~~~~-L~~~~~r~aA~dcL~eIv~k~~~~~--~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~ 313 (1073)
T 3gjx_A 243 ------IFETKLISTLIYKF-LNVPMFRNVSLKCLTEIAGVSVSQY--EEQFETLFTLTMMQLKQMLPLNTNIRLAYSNG 313 (1073)
T ss_dssp ------HHSSSHHHHHHHHT-SSSHHHHHHHHHHHHHHHHSCSGGG--HHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTC
T ss_pred ------HCCCHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf ------60542899999986-6986789999999999996415206--89999999999999988658820278887446
Q ss_pred --CCCHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCC--
Q ss_conf --9912389999998554421251355400184999999999999863210125671899999999841275765689--
Q 001571 308 --ADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKGD-- 383 (1051)
Q Consensus 308 --~~~~~~~~~~~~l~rl~~~~~l~~l~~~~~~~~~l~~l~~~T~~~l~~~~~~~~s~~~lL~~W~~lv~~~~~~~~~-- 383 (1051)
.|++....+|+++.-+..+|. ..+.+.+.+...+.....+...+-.. .+.+.+.+++++|..++..+ |.+.+
T Consensus 314 ~~~d~e~~~~l~~~f~~~~e~~~-~lIe~~p~~~~~l~~~l~~ll~~s~~--~d~ei~kitf~fW~~L~~~L-~~e~~~~ 389 (1073)
T 3gjx_A 314 KDDEQNFIQNLSLFLCTFLKEHG-QLLEKRLNLREALMEALHYMLLVSEV--EETEIFKICLEYWNHLAAEL-YRESPFS 389 (1073)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHH-HHHHHCGGGHHHHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHH-HHHCCSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHH-HHHCCCC
T ss_conf 55149999999999999999999-99835854247999999999998389--91999999999999999999-8614233
Q ss_pred ---C-----------CCH---HHHHHHHHHHHHHHHHCCCCCCCCC-C-CCCCC---CCCCH---HHHHHHHHHHHHHHC
Q ss_conf ---9-----------643---5543799999998600010112458-8-88999---98868---879999830232210
Q 001571 384 ---A-----------PSL---LDEFVPKITEGFITSRFNSVQAGFP-D-DLSDN---PLDNV---ELLQDQLDCFPYLCR 438 (1051)
Q Consensus 384 ---~-----------~~~---l~~~~~~I~~~yi~~~l~~~~~~~~-~-e~~e~---~~~d~---~~~~~~le~i~~l~r 438 (1051)
. +.. ...+..++... +.+||..|+++.. | |.+|- ..+|. ..++.+.+++.++++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~v-lI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~ 468 (1073)
T 3gjx_A 390 TSASPLLSGSQHFDIPPRRQLYLTVLSKVRLL-MVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTH 468 (1073)
T ss_dssp CCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHH-HHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 34451002221001033899999999999999-99825999423546765126899988613218999999999998704
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 34123899999959999999999851178995134667777999999999983044346788642001033789999998
Q 001571 439 FQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQL 518 (1051)
Q Consensus 439 ~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l 518 (1051)
.++.++..++.+.+.+.. ...+++|..++ .++|.++ ++-+.. .++.+. ..|+..+-.+
T Consensus 469 l~~~~~~~i~~~~l~~~~-------~~~~~sW~~le----a~~~aig---aIag~~------~~~~E~--~~Lp~vi~~L 526 (1073)
T 3gjx_A 469 LDYVDTEIIMTKKLQNQV-------NGTEWSWKNLN----TLCWAIG---SISGAM------HEEDEK--RFLVTVIKDL 526 (1073)
T ss_dssp HCHHHHHHHHHHHHHHHH-------TSCCCCHHHHH----HHHHHHH---HTTTSS------CHHHHH--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH-------CCCCCCHHHHH----HHHHHHH---HHHCCC------CCCCCC--CHHHHHHHHH
T ss_conf 888999999999999984-------67888878883----9999999---987727------862100--2299999998
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 63046666531112440789999999999996878715677664588899998709987687999999999720168788
Q 001571 519 INVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTE 598 (1051)
Q Consensus 519 ~~l~~~~~~~~~~~~~s~~~l~~a~l~fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~~~~~~~~~~l~ki~~nL~~~~~ 598 (1051)
+++.+..-.. -..+++..+++|.++||.+-...+ ...+...+++++.-+. ..
T Consensus 527 l~L~e~~~~k-----d~k~~vas~i~~vlgrY~~wl~~h---------------------~~~L~~vl~~L~~~m~--~~ 578 (1073)
T 3gjx_A 527 LGLCEQKRGK-----DNKAIIASNIMYIVGQYPRFLRAH---------------------WKFLKTVVNKLFEFMH--ET 578 (1073)
T ss_dssp HHHHHHSCSH-----HHHHHHHHHHHHHHHHCHHHHHHC---------------------HHHHHHHHHHHHHHTT--CC
T ss_pred HCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHC---------------------HHHHHHHHHHHHHHHH--CC
T ss_conf 6341444434-----126999999999995007999867---------------------7999999999999984--49
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHH-HH------CCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC---
Q ss_conf 167999999999998404100237-71------55369999983000789975333343236799999999982367---
Q 001571 599 SQEVIDHTLSLFLELASGYMTGKL-LL------KLDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFMEE--- 668 (1051)
Q Consensus 599 ~~~i~~~~~~Ll~~l~~~~~~~~~-l~------~~~~~~~l~~~~~~~~~~~l~~~~~~~~r~~~~~~l~~~~~~~~--- 668 (1051)
.+.|...|++-|..++. .|+. ++ ..|.+..++++..... .-++ .+....+|+++|.++...+
T Consensus 579 ~~~vq~aA~~af~~i~~---~C~~~lv~~~~~e~~p~i~~il~~~~~~~-~~l~----~~~~~~lyeav~~vi~~~p~~~ 650 (1073)
T 3gjx_A 579 HDGVQDMACDTFIKIAQ---KCRRHFVQVQVGEVMPFIDEILNNINTII-CDLQ----PQQVHTFYEAVGYMIGAQTDQT 650 (1073)
T ss_dssp STTHHHHHHHHHHHHHH---HTGGGGTSCCTTCSSCHHHHHHTSHHHHH-TTCC----HHHHHHHHHHHHHHHTTCCCHH
T ss_pred CHHHHHHHHHHHHHHHH---HHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHCC----HHHHHHHHHHHHHHHHHCCCCC
T ss_conf 87899999999999999---99898752355545359999999999999-7469----9999999999999998599720
Q ss_pred -CHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf -938999946989999998406---9975566179999999999997457762046115898999882200479999743
Q 001571 669 -SPVKFKSSMDPLLQVFISLES---TPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGIS 744 (1051)
Q Consensus 669 -~~~~~~~~l~pl~~~~~~l~~---~~~~~~~~~~~~~~i~~ll~~l~Gi~~a~~~~~~~~~lf~~i~~~~~~~~~~l~~ 744 (1051)
..++++.+|.|+..+|+++.. ++...+.+++..+.+..+++++..+|.++.. .|...+.-++|+ +++
T Consensus 651 ~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~--~f~~~~~~i~~~-------~l~ 721 (1073)
T 3gjx_A 651 VQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGH--PFVIQLGRIYLD-------MLN 721 (1073)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHH-------HHH
T ss_conf 29999999988999999999998621714205838999999999653998845652--579999999999-------999
Q ss_pred HHCCCCCHH------------------------HHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 005997137------------------------89999999997412351112478811354699999999999976507
Q 001571 745 HWTDTPEVT------------------------TPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLS 800 (1051)
Q Consensus 745 ~y~~~~~v~------------------------~~iLkl~~~~~~n~~~ri~f~~~s~~~~~lf~~~~~ii~~y~~~~~~ 800 (1051)
+|..+++.+ ..||||+..++.+... .......++-..+..++..|.+ +
T Consensus 722 ~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~-----~~~v~~~~i~pl~~~vl~dY~~---~ 793 (1073)
T 3gjx_A 722 VYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSND-----PQMVAENFVPPLLDAVLIDYQR---N 793 (1073)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSC-----HHHHHHHTSHHHHHHTHHHHHH---S
T ss_pred HHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHHHHHHHC---C
T ss_conf 9999999999999827841122599999899999999999999814797-----8999998678999999998853---8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99811167655655999999999826099633456554699718999999999640568246860286489999999999
Q 001571 801 LPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVL 880 (1051)
Q Consensus 801 ~~~~~~~~~~~~k~i~~~l~il~~~l~~~~vnfg~~~~y~D~~~~~~~~~~l~l~l~ip~~dl~~yPkl~~~~f~ll~~~ 880 (1051)
.|.. +-.++..++.++.+.+++... +.++.+++.+|++++.|..+|+.+||+++..||+|+..+
T Consensus 794 ~p~~------r~~evL~l~s~iv~k~~~~~~----------~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~ 857 (1073)
T 3gjx_A 794 VPAA------REPEVLSTMAIIVNKLGGHIT----------AEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAV 857 (1073)
T ss_dssp CGGG------CCTHHHHHHHHHHHHHGGGTG----------GGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHH
T ss_pred CCCC------CCHHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 8531------369999999999999886540----------448999999999999998677312968899999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 95537766458978999999999982048884778599999999999998841368999974789999887209991899
Q 001571 881 FSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPE 960 (1051)
Q Consensus 881 ~~~~~~~l~~l~~~~f~~i~~sl~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 960 (1051)
++.|+..+.++|++.|+.+++++.||++|..++|+..++.++..+...+.++ .+.++.+. ...+..
T Consensus 858 ~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~--------~~~~~~F~------~~~~~~ 923 (1073)
T 3gjx_A 858 NSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQE--------EAAAQSFY------QTYFCD 923 (1073)
T ss_dssp HHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHH------HHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC--------HHHHHHHH------HHHHHH
T ss_conf 9977699983999999999999999918997169999999999999976248--------49999999------999999
Q ss_pred HHHHHHHHHHCCCCCCHHHCHHHHHH----HHH-------C-------CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHH
Q ss_conf 99999999941677750100335588----881-------6-------9789999999998-049913688999999997
Q 001571 961 ILKTLFEIVLFEDCGNQWSLSRPMLS----LIL-------I-------SEQVFSDLKAQIL-TSQPVDQHQRLSVCFDKL 1021 (1051)
Q Consensus 961 ~l~~~~~~ll~~~~~~~~~~s~~L~~----li~-------~-------~~~~f~~l~~~li-~~q~~~~~~~l~~af~~L 1021 (1051)
++..+|.+++..+|+..++....++. ++- + ++.+..++..+++ ++.|.-.++++..--..|
T Consensus 924 ~~~~i~~v~td~~h~~~f~~q~~il~~l~~~~~~~~i~~~l~~~~~~~n~~~~~~~~~~~l~~~fp~~~~~qi~~fv~~l 1003 (1073)
T 3gjx_A 924 ILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTPLNPGNPVNNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGL 1003 (1073)
T ss_dssp HHHHHHHHHTCTTCGGGHHHHHHHHHHHHHHHTTTCCSCSSSCTTTTCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999718267631047999999999999827735566666787658999999999999747999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 7343104692339888998999999862
Q 001571 1022 MADVARSLDSKNRDKFTQNLTVFRHEFR 1049 (1051)
Q Consensus 1022 ~~~i~~~l~~~nr~~F~~nl~~F~~~vr 1049 (1051)
.+ ...+..+|+..+..|+..+|
T Consensus 1004 ~~------~~~d~~~f~~~lrDFli~~k 1025 (1073)
T 3gjx_A 1004 FS------LNQDIPAFKEHLRDFLVQIK 1025 (1073)
T ss_dssp HH------STTCHHHHHHHHHHHHHHHT
T ss_pred HH------HCCCHHHHHHHHHHHHHHHH
T ss_conf 98------02889999999999999999
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=1.00 E-value=1 Score=475.56 Aligned_cols=906 Identities=14% Similarity=0.196 Sum_probs=609.8
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHH
Q ss_conf 4899999999982599999999999998741049421999999983089816899999999999862--26897889999
Q 001571 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1051)
Q Consensus 3 ~i~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~l 80 (1051)
+++.||+++..+|+|++ ++|++|+++|.+|+++|++|..|..||+.+++++++|+|+++|++.|++ +.+|+++|.++
T Consensus 14 dv~~Le~av~~ly~p~~-~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~I 92 (1023)
T 4hat_C 14 DIALLDQVVSTFYQGSG-VQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92 (1023)
T ss_dssp CHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999849995-99999999999987195488899999538998899999999999999761112999999999
Q ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 999999998419981-----278999999999999850268982442579999999831374048889999999997304
Q 001571 81 RNYLINYLAKRGPEL-----QSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMN 155 (1051)
Q Consensus 81 r~~ll~~l~~~~~~~-----~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~igl~iL~~lv~Ef~ 155 (1051)
|+++++++.+.+.+. ++++++|++.+++.|+|++||+.|+ +++.++.+.++ .++.++..++.+|..+.+|..
T Consensus 93 r~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp--~~l~dL~~~l~-~~~~~~~~~L~iL~~L~EEV~ 169 (1023)
T 4hat_C 93 RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP--EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVF 169 (1023)
T ss_dssp HHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCH--HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999865785222231999999999999999985733232--89999999856-997789999999999999998
Q ss_pred C-CCCCCCHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9-999964587576664111010288999999999755454688999999999857145326666877786655555688
Q 001571 156 Q-PNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIP 234 (1051)
Q Consensus 156 ~-~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~p 234 (1051)
. ....++..+.++.+..++.. ++.|+.++..+|..... ..+...+|+++..+++|.+.+..
T Consensus 170 ~~~~~~l~~~r~~~lk~~l~~~-~~~I~~ll~~iL~~~~~---~~l~~~~L~~l~s~l~WI~i~~i-------------- 231 (1023)
T 4hat_C 170 DFSAEQMTQAKALHLKNSMSKE-FEQIFKLCFQVLEQGAS---SSLIVATLESLLRYLHWIPYRYI-------------- 231 (1023)
T ss_dssp TSCTTTSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTTSCTHHH--------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHCCHHHH--------------
T ss_conf 7100001599988899999998-99999999999827898---89999999999999984899875--------------
Q ss_pred CCCCCCCCCCCHHHHHH-HHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH-----HHHCCC---
Q ss_conf 77300016960799999-998414985449999999987200246789928899999999998999-----850376---
Q 001571 235 SAWRPVLEDPSTLQIFF-DYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKE-----ILQTGQ--- 305 (1051)
Q Consensus 235 ~~W~~~l~~~~~l~~lf-~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~-----il~~~~--- 305 (1051)
.++++++.+| ... ..+.++..|.+||.++++.+.+ .+..+..+.+..++.++.. +++...
T Consensus 232 -------~~~~ll~~l~~~~L--~~~~~r~~A~ecL~eIv~~~~~--~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~ 300 (1023)
T 4hat_C 232 -------YETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIP--QDNDLIKRQTVLFFQNTLQQIATSVMPVTADLK 300 (1023)
T ss_dssp -------HSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHTSCCC--SSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHH
T ss_pred -------CCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf -------14449999999876--9878899999999999804257--855778899999999999999997379741289
Q ss_pred -----C-CCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf -----7-8991238999999855442125135540018499999999999986321012567189999999984127576
Q 001571 306 -----G-LADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPY 379 (1051)
Q Consensus 306 -----~-l~~~~~~~~~~~~l~rl~~~~~l~~l~~~~~~~~~l~~l~~~T~~~l~~~~~~~~s~~~lL~~W~~lv~~~~~ 379 (1051)
+ -.|++....+|+++.-+..+|. ..+.+.+.+.+.+.........+-.. .+.+.+.+++++|..++.++ |
T Consensus 301 ~~~~~~~~~D~e~~~~l~~l~~~~~e~~~-~li~~~~~~~~~l~~~l~~Ll~~~~~--~d~ei~~~tl~FW~~L~~~l-~ 376 (1023)
T 4hat_C 301 ATYANANGNDQSFLQDLAMFLTTYLARNR-ALLESDESLRELLLNAHQYLIQLSKI--EERELFKTTLDYWHNLVADL-F 376 (1023)
T ss_dssp HHHHHTCTTHHHHHHHHHHHHHHHHHHHG-GGGTSCGGGHHHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHH-H
T ss_conf 99862663119999999999999999999-99867910358999999999986189--92889999999999999999-8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCC------CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 5689964355437999999986000101124--58888999------988688799998302322103412389999995
Q 001571 380 LKGDAPSLLDEFVPKITEGFITSRFNSVQAG--FPDDLSDN------PLDNVELLQDQLDCFPYLCRFQYENSGLYIINT 451 (1051)
Q Consensus 380 ~~~~~~~~l~~~~~~I~~~yi~~~l~~~~~~--~~~e~~e~------~~~d~~~~~~~le~i~~l~r~~~~~t~~~L~~l 451 (1051)
...........+..++... +..|+..|+++ +++|+++. ..|+.+.++..++++.+++++...++.+.+.+.
T Consensus 377 ~e~~~~~~~~~~~~~L~~v-li~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~ 455 (1023)
T 4hat_C 377 YEPLKKHIYEEICSQLRLV-IIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISK 455 (1023)
T ss_dssp TSTTTGGGGHHHHHHHHHH-HHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 5657888899999999999-998657982026677888608887144558899999999999998606878999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999998511789951346677779999999999830443467886420010337899999986304666653111
Q 001571 452 MEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQRY 531 (1051)
Q Consensus 452 l~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~l~~~~~~~~~~ 531 (1051)
+.+.+. .++.+|..++ ..+|.++ ++.+|. .++.+ +..+...+-.++++....-.
T Consensus 456 l~~~l~-------~~~~~W~~~E----A~~~a~g---aIa~~~------~~~~e--~~~l~~vi~~Ll~l~~~~~~---- 509 (1023)
T 4hat_C 456 LARQID-------GSEWSWHNIN----TLSWAIG---SISGTM------SEDTE--KRFVVTVIKDLLDLCVKKRG---- 509 (1023)
T ss_dssp HHHHHS-------STTCCHHHHH----HHHHHHH---HTTTSS------CHHHH--HHHHHHHHHHHHHHHHHCCS----
T ss_pred HHHHHC-------CCCCCHHHHH----HHHHHHH---HHHCCC------CCHHH--HHHHHHHHHHHHHHHHCCCC----
T ss_conf 999854-------8878889998----9999999---997689------81557--88899999999975410346----
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 24407899999999999968787156776645888999987099876879999999997201687881679999999999
Q 001571 532 CELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFL 611 (1051)
Q Consensus 532 ~~~s~~~l~~a~l~fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~~~~~~~~~~l~ki~~nL~~~~~~~~i~~~~~~Ll~ 611 (1051)
.-.++++..+.+|.++||++-.-.+ ...+...+++++.-+. ...+.+...|+.-|.
T Consensus 510 -~d~k~~v~~t~~~~lGry~~wl~~~---------------------~~~L~~vl~~L~~~l~--~~~~~v~~~A~~al~ 565 (1023)
T 4hat_C 510 -KDNKAVVASDIMYVVGQYPRFLKAH---------------------WNFLRTVILKLFEFMH--ETHEGVQDMACDTFI 565 (1023)
T ss_dssp -HHHHHHHHHHHHHHHHTCHHHHHHC---------------------HHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHCC---------------------HHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_conf -7625999999999999999998616---------------------7989999999999861--698789999999999
Q ss_pred HHHCCCCHHHH-HHC------CHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHH
Q ss_conf 98404100237-715------5369999983000789975333343236799999999982367----938999946989
Q 001571 612 ELASGYMTGKL-LLK------LDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFMEE----SPVKFKSSMDPL 680 (1051)
Q Consensus 612 ~l~~~~~~~~~-l~~------~~~~~~l~~~~~~~~~~~l~~~~~~~~r~~~~~~l~~~~~~~~----~~~~~~~~l~pl 680 (1051)
.++.+ |+. +.. .|.+..+++...... +-+ + .+.+..+|++++.++...+ ..++++.+|.|+
T Consensus 566 ~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~-~~l--~--~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~ 637 (1023)
T 4hat_C 566 KIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTT-ADL--Q--PQQVHTFYKACGIIISEERSVAERNRLLSDLMQLP 637 (1023)
T ss_dssp HHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHH-TTS--C--HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHH
T ss_pred HHHHH---HHHHHHCCCCCCCCHHHHHHHHHHHHHH-HHC--C--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999---8887613577778606999999999998-847--9--88899999999999985887744899999998858
Q ss_pred HHHHHHHH----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99999840----69975566179999999999997457762046115898999882200479999743005997137899
Q 001571 681 LQVFISLE----STPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPL 756 (1051)
Q Consensus 681 ~~~~~~l~----~~~~~~~~~~~~~~~i~~ll~~l~Gi~~a~~~~~~~~~lf~~i~~~~~~~~~~l~~~y~~~~~v~~~i 756 (1051)
...|+++. .+| ..+.+++..+.+..+++++..++.+... .|...++- ++..++++|..++..+...
T Consensus 638 ~~~~~~l~~~~~~~~-~~~~d~~~~~~l~~il~~~~~v~~~lg~--~f~~~~~~-------i~~~~l~~y~~~s~~i~~~ 707 (1023)
T 4hat_C 638 NMAWDTIVEQSTANP-TLLLDSETVKIIANIIKTNVAVCTSMGA--DFYPQLGH-------IYYNMLQLYRAVSSMISAQ 707 (1023)
T ss_dssp HHHHHHHHHHHHHCT-TGGGCHHHHHHHHHHHHHHHHHHHHHGG--GGHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-HHHCCHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_conf 999999999872272-5412878899999999999999998268--89999999-------9999999999999999999
Q ss_pred HHHHHHHHHCCCCCEECCCCCCCHH-HHHHHHHHHHHHHHHHHCCC--------CC----CHHHHHH-----HHHHHHHH
Q ss_conf 9999999741235111247881135-46999999999999765079--------98----1116765-----56559999
Q 001571 757 LKFMAEFVLNKAQRLTFDSSSPNGI-LLFREVSKLIVAYGSRVLSL--------PN----AADIYAY-----KYKGMWIC 818 (1051)
Q Consensus 757 Lkl~~~~~~n~~~ri~f~~~s~~~~-~lf~~~~~ii~~y~~~~~~~--------~~----~~~~~~~-----~~k~i~~~ 818 (1051)
.+--+..+. ..+..+++ .+.+++.+++.+|..+.-+. ++ --.+|.. +-.++..+
T Consensus 708 ~~~~g~~~~--------~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l 779 (1023)
T 4hat_C 708 VAAEGLIAT--------KTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNC 779 (1023)
T ss_dssp HHHHCGGGG--------GSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHH
T ss_pred HHHCCCHHH--------CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHH
T ss_conf 984794253--------168888889999999999999996279889999986788999999888728720103889999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99999826099633456554699718999999999640568246860286489999999999955377664589789999
Q 001571 819 FTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMH 898 (1051)
Q Consensus 819 l~il~~~l~~~~vnfg~~~~y~D~~~~~~~~~~l~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~ 898 (1051)
++++.+.+++.+ .+.++.+++.++++|+.|..+|+.+||+++..||+|+..+++.+|..+.++|++.|+.
T Consensus 780 ~s~iv~~~~~~~----------~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~ 849 (1023)
T 4hat_C 780 MTTVVEKVGHMI----------PQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKL 849 (1023)
T ss_dssp HHHHHHHHGGGC----------HHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHH
T ss_conf 999999887741----------0156899999999999998556222949899999999999997769997499999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 99999982048884778599999999999998841368999974789999887209991899999999999416777501
Q 001571 899 IVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQW 978 (1051)
Q Consensus 899 i~~sl~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~ 978 (1051)
+++++.||++|.+++|+..++.++..+...+.+.. + .+.++.+.+ .++..++..+|.+++..+|+..+
T Consensus 850 ~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~--~----~~~~~~f~~------~~~~~~~~~~~~v~td~~h~~~f 917 (1023)
T 4hat_C 850 FVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMG--N----VPFANEFHK------NYFFIFVSETFFVLTDSDHKSGF 917 (1023)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHC--S----SHHHHHHHH------HHHHHHHHHHHHHHHSSSCGGGH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC--C----HHHHHHHHH------HHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99999998089955899999999999999877457--8----489999999------99999999999998385165318
Q ss_pred HCHHHHHHH-HH---------------------CCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 003355888-81---------------------697899999999980-4991368899999999773431046923398
Q 001571 979 SLSRPMLSL-IL---------------------ISEQVFSDLKAQILT-SQPVDQHQRLSVCFDKLMADVARSLDSKNRD 1035 (1051)
Q Consensus 979 ~~s~~L~~l-i~---------------------~~~~~f~~l~~~li~-~q~~~~~~~l~~af~~L~~~i~~~l~~~nr~ 1035 (1051)
+...-++.- +. .++.+..++..+++. +.|...++++..--..|.+ ...+..
T Consensus 918 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~fp~~~~~qi~~fv~~l~~------~~~~~~ 991 (1023)
T 4hat_C 918 SKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTK------QCKDLV 991 (1023)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSCSSCTTSSCTTCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH------TTTCHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH------CCCCHH
T ss_conf 99999999999999738713446772226888744999999999999874899999999999999997------339999
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 889989999998623
Q 001571 1036 KFTQNLTVFRHEFRV 1050 (1051)
Q Consensus 1036 ~F~~nl~~F~~~vr~ 1050 (1051)
+|+..+..|+..+|-
T Consensus 992 ~f~~~lrdfli~~ke 1006 (1023)
T 4hat_C 992 VFKGTLRDFLVQIKE 1006 (1023)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999998687676
No 3
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=1.00 E-value=1 Score=386.02 Aligned_cols=881 Identities=12% Similarity=0.094 Sum_probs=577.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHH
Q ss_conf 4899999999982599999999999998741049421999999983089816899999999999862--26897889999
Q 001571 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1051)
Q Consensus 3 ~i~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~l 80 (1051)
++++++++++.+|.+++++.|++||+.|.+|+++|++|..|..||+.+.+++++|+|+++|++.|++ +.+++++|..+
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 101 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESL 101 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHCCHHHHHHH
T ss_conf 59999999999835979899999999999984699999999998657972588999999999999738874999999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHCC
Q ss_conf 999999998419981278999999999999850268982442579999999831-----374048889999999997304
Q 001571 81 RNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQ-----ATSDHYAIGLKILNQLVSEMN 155 (1051)
Q Consensus 81 r~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~-----~~~~~~~igl~iL~~lv~Ef~ 155 (1051)
|+++++++.+. ++.+++|++|++.+++.|+|++|++.|+ +++.++.+.+++ .++.++..++.+|..+.+|..
T Consensus 102 r~~ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~~Wp--~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~ 178 (963)
T 2x19_B 102 KAQLFTQITRF-ASGSKIVLTRLCVALASLALSMMPDAWP--CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQ 178 (963)
T ss_dssp HHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHH
T ss_conf 99999999987-4898899999999999999874831155--59999999986433578747889999999986899885
Q ss_pred CCCCCCCHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999645875766641110102889999999997554546889999999998571453266668777866555556887
Q 001571 156 QPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPS 235 (1051)
Q Consensus 156 ~~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~p~ 235 (1051)
..+. +..++...+..++. .++.++.+...++..... +..+...+++++ .+|...+...+
T Consensus 179 ~~~~--~~~~r~~~~~~l~~-~~~~i~~ll~~~l~~~~~--~~~~~~~~l~~l---~~wi~~~~~~~------------- 237 (963)
T 2x19_B 179 TSRL--PQYRKGLVRTSLAV-ECGAVFPLLEQLLQQPSS--PSCVRQKVLKCF---SSWVQLEVPLQ------------- 237 (963)
T ss_dssp TCCC-----------CCSGG-GHHHHHHHHHHHHSCTTC--CHHHHHHHHHHH---HHHHTSSCCGG-------------
T ss_pred CCCC--CHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCC--CHHHHHHHHHHH---HHHHCCCCCCC-------------
T ss_conf 0658--69999999999998-788999999999827788--057999999999---99982899853-------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCHH
Q ss_conf 73000169607999999984149854499999999872002467899288999999999989998503---767899123
Q 001571 236 AWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQT---GQGLADHDN 312 (1051)
Q Consensus 236 ~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~---~~~l~~~~~ 312 (1051)
..+.+++.+|+.. .+++++..+++|+.++.+.+.+- .+..++..++.++...++. ...-.|.+.
T Consensus 238 ------~~~~ll~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~ 304 (963)
T 2x19_B 238 ------DCEALIQAAFAAL--QDSELFDSSVEAIVNAISQPDAQ-----RYVNTLLKLIPLVLGLQEQLRQAVQNGDMET 304 (963)
T ss_dssp ------GTHHHHHHHHHHT--TSTTTHHHHHHHHHHHHTCTTGG-----GCHHHHHHHHHHHHTTHHHHHHHHHTTCHHH
T ss_pred ------CCHHHHHHHHHHH--CCCHHHHHHHHHHHHHHCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf ------4168999999986--79647999999999997531124-----5779999999999740799999998779899
Q ss_pred HHHHHHHHHHHHHHCCHHHHHC----CCCHHHHHHHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHCCCCCCCCC-C
Q ss_conf 8999999855442125135540----0184999999999999863210---125671899999999841275765689-9
Q 001571 313 YHEYCRLLGRFRVNYQLSELVN----VEGYSDWIQLVAEFTLKSLQSW---QWASSSVYYLLGLWSRLVTSVPYLKGD-A 384 (1051)
Q Consensus 313 ~~~~~~~l~rl~~~~~l~~l~~----~~~~~~~l~~l~~~T~~~l~~~---~~~~~s~~~lL~~W~~lv~~~~~~~~~-~ 384 (1051)
+..+|+++.++...++ ..+.. .+.+..+++.+..+ .+.+ ..+++....++++|..++......... .
T Consensus 305 ~~~~~~l~~~~~~~~~-~~l~~~~~~~~~~~~~l~~ll~~----~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~ 379 (963)
T 2x19_B 305 SHGICRIAVALGENHS-RALLDQVEHWQSFLALVNMIMFC----TGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQ 379 (963)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHCGGGHHHHHHHHHHHHHH----HTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHH----HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999869-99973755658999999999999----758888872034544129999999999986234445
Q ss_pred C---CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6---4355437999999986000101124588889999886887----99998302322103412389999995999999
Q 001571 385 P---SLLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVEL----LQDQLDCFPYLCRFQYENSGLYIINTMEPILQ 457 (1051)
Q Consensus 385 ~---~~l~~~~~~I~~~yi~~~l~~~~~~~~~e~~e~~~~d~~~----~~~~le~i~~l~r~~~~~t~~~L~~ll~~~~~ 457 (1051)
+ ..+..+..++....+ .++..++...-++ ...||.+. .....+.+..+++..+.++.+.+.+.+.+.++
T Consensus 380 ~~~~~~~~~~l~~l~~~ll-~~~~~p~~~~~~~---~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~ 455 (963)
T 2x19_B 380 AVYQQVYRPVYFQLVDVLL-HKAQFPSDEEYGF---WSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLT 455 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHSCCCHHHHHT---SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 7889999999999999999-9980998302267---77638999999999999999999997068999999999999997
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHCCCCCCCCCCCCCCH
Q ss_conf 99998511789951346677779999999999830443467886420010337899999986-30466665311124407
Q 001571 458 SYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLI-NVTDSGLHSQRYCELSK 536 (1051)
Q Consensus 458 ~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~-~l~~~~~~~~~~~~~s~ 536 (1051)
+| ..+.+|... + -. ++..|++..+-... . +..+. .++..+ ++.+ . .
T Consensus 456 ~~-----~~~~~w~~~---e-aa---l~al~~i~~~~~~~-----~----~~~l~-~l~~~l~~l~~----------~-~ 502 (963)
T 2x19_B 456 SS-----EEPYSWQHT---E-AL---LYGFQSIAETIDVN-----Y----SDVVP-GLIGLIPRISI----------S-N 502 (963)
T ss_dssp TC-----CCSCCHHHH---H-HH---HHHHHHHTTSCCSS-----C----CSHHH-HHHHHGGGSCC----------C-S
T ss_pred HC-----CCCCCHHHH---H-HH---HHHHHHHHHHCCCH-----H----HHHHH-HHHHHHHHCCC----------C-C
T ss_conf 25-----799866799---8-99---99999997043822-----4----67899-99999985799----------8-5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 89999999999996878715677664588899998709987687999999999720168788167999999999998404
Q 001571 537 QRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASG 616 (1051)
Q Consensus 537 ~~l~~a~l~fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~~~~~~~~~~l~ki~~nL~~~~~~~~i~~~~~~Ll~~l~~~ 616 (1051)
+++..+.+|++++|+.. +.++ ...+..++++++..+.. ++|...|+..|..++..
T Consensus 503 ~~vr~~~~~~l~~~~~~-l~~~--------------------~~~l~~vl~~l~~~l~~----~~V~~~A~~al~~l~~~ 557 (963)
T 2x19_B 503 VQLADTVMFTIGALSEW-LADH--------------------PVMINSVLPLVLHALGN----PELSVSSVSTLKKICRE 557 (963)
T ss_dssp HHHHHHHHHHHHHTHHH-HHHC--------------------HHHHTTTHHHHHHHTTC----GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHC--------------------HHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHH
T ss_conf 89999999999988888-8758--------------------89899999999987178----46899999999999999
Q ss_pred CCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 10023771553699999830007899753333-432367999999999823---67938999946989999998406997
Q 001571 617 YMTGKLLLKLDTIKFIVANHTREHFPFLEEYR-CSRSRTTFYYTIGWLIFM---EESPVKFKSSMDPLLQVFISLESTPD 692 (1051)
Q Consensus 617 ~~~~~~l~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~r~~~~~~l~~~~~~---~~~~~~~~~~l~pl~~~~~~l~~~~~ 692 (1051)
|+..+ .|.+..+++.... .++.+. ..+.|..+|++++.++.. +....|+..+|.|+...|.++..++
T Consensus 558 ---~~~~l-~p~~~~il~~l~~----~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~- 628 (963)
T 2x19_B 558 ---CKYDL-PPYAANIVAVSQD----VLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI- 628 (963)
T ss_dssp ---TGGGC-TTTHHHHHHHHHH----HHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred ---HHHHH-HHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_conf ---89987-7669999999999----86357898488999999999999629999999999999989999999998278-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH----------------HHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 5566179999999999997457762046115----------------898999882200479999743005997137899
Q 001571 693 SMFRTDAVKCALIGLMRDLRGIAMATNSRRT----------------YGLLFDWLYPAHMPLLLKGISHWTDTPEVTTPL 756 (1051)
Q Consensus 693 ~~~~~~~~~~~i~~ll~~l~Gi~~a~~~~~~----------------~~~lf~~i~~~~~~~~~~l~~~y~~~~~v~~~i 756 (1051)
.+++.+..+...++++.+++++...... ...-+..++...++.+..+++.|.+++.+...+
T Consensus 629 ---~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~ 705 (963)
T 2x19_B 629 ---PNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAV 705 (963)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf ---98778999999999999999774898643322232212477778899469999999999999998566746899999
Q ss_pred HHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999997412351112478811354699999999999976507998111676556559999999998260996334565
Q 001571 757 LKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVF 836 (1051)
Q Consensus 757 Lkl~~~~~~n~~~ri~f~~~s~~~~~lf~~~~~ii~~y~~~~~~~~~~~~~~~~~~k~i~~~l~il~~~l~~~~vnfg~~ 836 (1051)
.+++...+..-+. .. +-.+-..+..++..|... . ...++.+++.++. .||..
T Consensus 706 ~~~l~~~~~~~~~-------~~-~~~l~~~~~~l~~~~~~~-------~---------~~~~l~l~~~li~----~f~~~ 757 (963)
T 2x19_B 706 CAIFEKSVKTLLD-------DF-APMVPQLCEMLGRMYSTI-------P---------QASALDLTRQLVH----IFAHE 757 (963)
T ss_dssp HHHHHHHHHHSSS-------TT-GGGHHHHHHHHHHHHHHS-------C---------CHHHHHHHHHHHH----HHTTC
T ss_pred HHHHHHHHHHHCC-------CC-CCCHHHHHHHHHHHHHCC-------C---------CCHHHHHHHHHHH----HHCCC
T ss_conf 9999999975010-------34-240799999999998757-------8---------5089999999999----85778
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 54699718999999999640568246860286489999999999955377664589789999999999820488847785
Q 001571 837 ELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGLDTNISS 916 (1051)
Q Consensus 837 ~~y~D~~~~~~~~~~l~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~i~~sl~~gl~~~~~~i~~ 916 (1051)
..++ +.+.+++...++.++.+..+++.++|++++.||.++..+++.++..+.. ++..|..++.++.+|+++.+++++.
T Consensus 758 ~~~~-~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~~ 835 (963)
T 2x19_B 758 PAHF-PPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-ERLDVKAVFQCAVLALKFPEAPTVK 835 (963)
T ss_dssp TTTC-HHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-TTSCHHHHHHHHHHHTTCSCHHHHH
T ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHCC-CCCCHHHHHHHHHHHCCCCCHHHHH
T ss_conf 0137-8999999999999999986276558638999999999999758398729-8514799999999975789779999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHH-HCHHHHHHHHHCCHHHH
Q ss_conf 99999999999998841368999974789999887209991899999999999416777501-00335588881697899
Q 001571 917 QCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQW-SLSRPMLSLILISEQVF 995 (1051)
Q Consensus 917 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~-~~s~~L~~li~~~~~~f 995 (1051)
.|+.++..+.++.. + .+. +.+++ ...+..++..+|..+..+.++..| .++..|+.++..+|+.+
T Consensus 836 ~~l~~l~~l~~~~~-----~----~~~---~~~~~---~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~ 900 (963)
T 2x19_B 836 ASCGFFTELLPRCG-----E----VES---VGKVV---QEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLL 900 (963)
T ss_dssp HHHHHHHHHGGGTT-----S----SCH---HHHHT---TTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHCCC-----C----HHH---HHHHH---HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 99999999985189-----7----378---99999---997999999999985335984677889999999999771999
Q ss_pred HHHHHHHHHCCC-H--HHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999980499-1--3688999999-99773431046923398889989999998623
Q 001571 996 SDLKAQILTSQP-V--DQHQRLSVCF-DKLMADVARSLDSKNRDKFTQNLTVFRHEFRV 1050 (1051)
Q Consensus 996 ~~l~~~li~~q~-~--~~~~~l~~af-~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr~ 1050 (1051)
.++..+++..+. | ...+.-.+.| .+|+ ..+.++.+|++.+..|...+|+
T Consensus 901 ~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~------~~~~~~~~f~~~l~~F~~~~r~ 953 (963)
T 2x19_B 901 SMWIKEALQPPGFPSARLSPEQKDTFSQQIL------RERVNKRRVKEMVKEFTLLCRG 953 (963)
T ss_dssp HHHHHHHTCSTTSSCTTCCHHHHHHHHHHHT------CSSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHCC
T ss_conf 9999998463689977589999999999999------9770818899999999999718
No 4
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=1.00 E-value=1 Score=352.81 Aligned_cols=902 Identities=15% Similarity=0.212 Sum_probs=560.9
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHH
Q ss_conf 4899999999982599999999999998741049421999999983089816899999999999862--26897889999
Q 001571 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1051)
Q Consensus 3 ~i~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~l 80 (1051)
++++++++++.+|+|+ ++.|++||+.|.+|+++|++|..|..||+++++++++|+|+.+|++.|++ ..+++++|..|
T Consensus 14 ~~~~l~~~l~~~~~p~-~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~i 92 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQGS-GVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92 (1049)
T ss_dssp CHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 5999999999986899-389999999999988395699999999862998899999999999999760704999999999
Q ss_pred HHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 999999998419981-----278999999999999850268982442579999999831374048889999999997304
Q 001571 81 RNYLINYLAKRGPEL-----QSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMN 155 (1051)
Q Consensus 81 r~~ll~~l~~~~~~~-----~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~igl~iL~~lv~Ef~ 155 (1051)
|+++++++.+...+. +++|++|++.++|.|+|++||+.|+ +++.++.+.++ .+..++..++.+|..+.+|..
T Consensus 93 r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp--~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~ 169 (1049)
T 3m1i_C 93 RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP--EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVF 169 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998627762000002899999999999999976811154--79999999871-585889999999999999998
Q ss_pred ---CCCCCCCHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---99999645875766641110102889999999997554546889999999998571453266668777866555556
Q 001571 156 ---QPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQ 232 (1051)
Q Consensus 156 ---~~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~ 232 (1051)
..+.+.....+.| ..|++ .++.||..+...++.... ..+...+++++..+++|...+.
T Consensus 170 ~~~~~~~~~~r~~~lk--~~l~~-~~~~i~~~~~~~l~~~~~---~~~~~~aL~~l~~~l~wi~~~~------------- 230 (1049)
T 3m1i_C 170 DFSAEQMTQAKALHLK--NSMSK-EFEQIFKLCFQVLEQGSS---SSLIVATLESLLRYLHWIPYRY------------- 230 (1049)
T ss_dssp TSCTTTSCHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHTTTSCTHH-------------
T ss_pred HHCCHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHCCHHH-------------
T ss_conf 7260013268999999--99999-999999999999986688---8999999999999986088998-------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHHHHHHH-----HHHCCC-
Q ss_conf 8877300016960799999998414985449999999987200246789928-899999999998999-----850376-
Q 001571 233 IPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDA-ARSKFLAHLMTGTKE-----ILQTGQ- 305 (1051)
Q Consensus 233 ~p~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~-~~~~~l~~~l~~~~~-----il~~~~- 305 (1051)
+.++.+++.+++.+. .+++++..+++||.++++.+ .+... .....+..++.++.. +++...
T Consensus 231 --------~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~---~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~ 298 (1049)
T 3m1i_C 231 --------IYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLK---IPQDNDLIKRQTVLFFQNTLQQIATSVMPVTAD 298 (1049)
T ss_dssp --------HHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCC---CCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSC
T ss_pred --------HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf --------860559999999868-98767999999999999488---995034688999999999999998862798541
Q ss_pred --------CCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf --------789912389999998554421251355400184999999999999863210125671899999999841275
Q 001571 306 --------GLADHDNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSV 377 (1051)
Q Consensus 306 --------~l~~~~~~~~~~~~l~rl~~~~~l~~l~~~~~~~~~l~~l~~~T~~~l~~~~~~~~s~~~lL~~W~~lv~~~ 377 (1051)
+-.+++.+..+|+++..+...+ ...+...+.+.+++..+..+...+.... +.+....++++|..++..+
T Consensus 299 l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~ll~~~~~~--d~~v~~~~lefw~~l~~~l 375 (1049)
T 3m1i_C 299 LKATYANANGNDQSFLQDLAMFLTTYLARN-RALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADL 375 (1049)
T ss_dssp HHHHHHHTCTTHHHHHHHHHHHHHHHHHHH-HHHHHSCGGGHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHH
T ss_conf 787744577102899999999999999999-9998288214799999999999988689--0899999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCC---CCCCHH---HHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 765689964355437999999986000101124--58888999---988688---7999983023221034123899999
Q 001571 378 PYLKGDAPSLLDEFVPKITEGFITSRFNSVQAG--FPDDLSDN---PLDNVE---LLQDQLDCFPYLCRFQYENSGLYII 449 (1051)
Q Consensus 378 ~~~~~~~~~~l~~~~~~I~~~yi~~~l~~~~~~--~~~e~~e~---~~~d~~---~~~~~le~i~~l~r~~~~~t~~~L~ 449 (1051)
+...........+..++... +..+|..++.. ..+|++|. ..+|.+ .++...+.+-.+++..+.++.+.+.
T Consensus 376 -~~~~~~~~~~~~~l~~Lv~~-ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~ 453 (1049)
T 3m1i_C 376 -FYEPLKKHIYEEICSQLRLV-IIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMI 453 (1049)
T ss_dssp -HHSTTCGGGGHHHHHHHHHH-HHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred -HHCHHHHHHHHHHHHHHHHH-HHHHCCCCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf -74635899999999999999-9986589962000057998504865312227999999999999988369899999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 95999999999985117899513466777799999999998304434678864200103378999999863046666531
Q 001571 450 NTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQ 529 (1051)
Q Consensus 450 ~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~l~~~~~~~~ 529 (1051)
+.+.+.++ .+..+|...+ -..|+++ ++.++. .+..+. ..+...+-.+.++......
T Consensus 454 ~~l~~~l~-------~~~~~W~~~e----aal~alg---sia~~~------~~~~e~--~~l~~v~~~l~~l~~~~~~-- 509 (1049)
T 3m1i_C 454 SKLARQID-------GSEWSWHNIN----TLSWAIG---SISGTM------SEDTEK--RFVVTVIKDLLDLTVKKRG-- 509 (1049)
T ss_dssp HHHHHHHT-------SSSCCHHHHH----HHHHHHH---HTTTSS------CHHHHH--HHHHHHHHHHHHHTTSSCS--
T ss_pred HHHHHHHC-------CCCCCHHHHH----HHHHHHH---HHHCCC------CCHHHH--HHHHHHHHHHHHHHHHHCC--
T ss_conf 99998727-------7878989999----9999999---986023------762557--9999999999987765435--
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 11244078999999999999687871567766458889999870998768799999999972016878816799999999
Q 001571 530 RYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSL 609 (1051)
Q Consensus 530 ~~~~~s~~~l~~a~l~fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~~~~~~~~~~l~ki~~nL~~~~~~~~i~~~~~~L 609 (1051)
....+++..+.+|.++||.+. +..+ ...+..++++++..+. ..+++|...|...
T Consensus 510 ---~~~~~~v~~~~~~~lgry~~~-~~~~--------------------~~~l~~vl~~ll~~l~--~~~~~V~~~A~~a 563 (1049)
T 3m1i_C 510 ---KDNKAVVASDIMYVVGQYPRF-LKAH--------------------WNFLRTVILKLFEFMH--ETHEGVQDMACDT 563 (1049)
T ss_dssp ---HHHHHHHHHHHHHHHHHCHHH-HHHC--------------------HHHHHHHHHHHHHHTT--SSCHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHHHHH-HHHH--------------------HHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
T ss_conf ---665499998899999977999-9867--------------------8999999999999861--8987899999999
Q ss_pred HHHHHCCCCHHHH-HHC------CHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----CHHHHHHHHH
Q ss_conf 9998404100237-715------5369999983000789975333343236799999999982367----9389999469
Q 001571 610 FLELASGYMTGKL-LLK------LDTIKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFMEE----SPVKFKSSMD 678 (1051)
Q Consensus 610 l~~l~~~~~~~~~-l~~------~~~~~~l~~~~~~~~~~~l~~~~~~~~r~~~~~~l~~~~~~~~----~~~~~~~~l~ 678 (1051)
|..++.. |+. +.. .|.+..+++..... +...+ .+.+..+|++++.++...+ ...++..+|.
T Consensus 564 l~~l~~~---~~~~l~~~~~~~~~p~~~~il~~l~~~----~~~~~-~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~ 635 (1049)
T 3m1i_C 564 FIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKT----TADLQ-PQQVHTFYKACGIIISEERSVAERNRLLSDLMQ 635 (1049)
T ss_dssp HHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHH----HTTSC-HHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTH
T ss_pred HHHHHHH---HHHHHHCCCCCCCCCHHHHHHHHHHHH----HHHCC-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999999---889861156778775799999989999----98589-999999999999999759978999999999998
Q ss_pred HHHHHHHHHH----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHH---HHHH---CC
Q ss_conf 8999999840----699755661799999999999974577620461158989998822004799997---4300---59
Q 001571 679 PLLQVFISLE----STPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKG---ISHW---TD 748 (1051)
Q Consensus 679 pl~~~~~~l~----~~~~~~~~~~~~~~~i~~ll~~l~Gi~~a~~~~~~~~~lf~~i~~~~~~~~~~l---~~~y---~~ 748 (1051)
|+..+|.++. .++ ....+++....+..+++++..++.+... .+...++.+++..+.++... ++.. .+
T Consensus 636 ~~~~~~~~~~~~~~~~~-~~~~d~~~~~~l~~~l~~~~~~~~~l~~--~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g 712 (1049)
T 3m1i_C 636 LPNMAWDTIVEQSTANP-TLLLDSETVKIIANIIKTNVAVCTSMGA--DFYPQLGHIYYNMLQLYRAVSSMISAQVAAEG 712 (1049)
T ss_dssp HHHHHHHHHHHHHHHCG-GGGGSHHHHHHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCH-HHHCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89999999999873164-6404879999999999999999998567--88999999999999999999998999997058
Q ss_pred C-----C------CHHHHHHHHHHHHHHCCCCCEECCCCCCCHH---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9-----7------1378999999999741235111247881135---469999999999997650799811167655655
Q 001571 749 T-----P------EVTTPLLKFMAEFVLNKAQRLTFDSSSPNGI---LLFREVSKLIVAYGSRVLSLPNAADIYAYKYKG 814 (1051)
Q Consensus 749 ~-----~------~v~~~iLkl~~~~~~n~~~ri~f~~~s~~~~---~lf~~~~~ii~~y~~~~~~~~~~~~~~~~~~k~ 814 (1051)
. | .+...+++++..+...- .....+ .+-..+..++..|.+. .+..+ +.+.+
T Consensus 713 ~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~--------~~l~~~~~~~~~~~l~~ll~~~~~~---~~~~~--~~~~l-- 777 (1049)
T 3m1i_C 713 LIATKTPKVRGLRTIKKEILKLVETYISKA--------RNLDDVVKVLVEPLLNAVLEDYMNN---VPDAR--DAEVL-- 777 (1049)
T ss_dssp GGGGGSHHHHHHHHHHHHHHHHHHHHHHHC--------SCHHHHHHHTHHHHHHHHHHHHHHS---CGGGC--CTHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHHHHHHC---CCCCC--CHHHH--
T ss_conf 502210889999999999999999999847--------9779999987899999999988718---96323--68799--
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 99999999982609963345655469971899999999964056824686028648999999999995537766458978
Q 001571 815 MWICFTILARALAGNYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTN 894 (1051)
Q Consensus 815 i~~~l~il~~~l~~~~vnfg~~~~y~D~~~~~~~~~~l~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~ 894 (1051)
.++..+...+++.+ ++.+..++..+++.++.|..+++..+|+++..||+|+..+.+.||..+..+|++
T Consensus 778 --~l~~~ii~~~~~~~----------~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~ 845 (1049)
T 3m1i_C 778 --NCMTTVVEKVGHMI----------PQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPA 845 (1049)
T ss_dssp --HHHHHHHHHHGGGC----------HHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHH
T ss_pred --HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCHHHHHCCCHH
T ss_conf --99999999988760----------666899999999999999852421089999999999999998678999759999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999999998204888477859999999999999884136899997478999988720999189999999999941677
Q 001571 895 TFMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDC 974 (1051)
Q Consensus 895 ~f~~i~~sl~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~~ 974 (1051)
.|..++++..|+++|.++++.+.++.++..+.+...+ .++ .+..+.+. ...+..++..+|..++...+
T Consensus 846 ~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~---~~~---~~~~~~f~------~~~~~~l~~~~~~~l~~~~h 913 (1049)
T 3m1i_C 846 AFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIER---MGN---VPFANEFH------KNYFFIFVSETFFVLTDSDH 913 (1049)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHH---SCS---CHHHHHHH------HHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH---CCC---HHHHHHHH------HHHHHHHHHHHHHHHHCCHH
T ss_conf 9999999999994799816999999999999999876---288---68899999------99999999999999856427
Q ss_pred CCHH-HCHHHHHHHHHC---------------------CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 7501-003355888816---------------------9789999999998-0499136889999999977343104692
Q 001571 975 GNQW-SLSRPMLSLILI---------------------SEQVFSDLKAQIL-TSQPVDQHQRLSVCFDKLMADVARSLDS 1031 (1051)
Q Consensus 975 ~~~~-~~s~~L~~li~~---------------------~~~~f~~l~~~li-~~q~~~~~~~l~~af~~L~~~i~~~l~~ 1031 (1051)
+.++ ..+..|.-++-. ++.++.++..+++ +..|.-..+....-...|.+ .+
T Consensus 914 ~s~~~~~~~~l~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~f~~~l~~------~~ 987 (1049)
T 3m1i_C 914 KSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTK------QY 987 (1049)
T ss_dssp GGGHHHHHHHHHHHHHHHHTTCCCSCSSCGGGSSTTCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH------CT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH------CC
T ss_conf 521899999999999998627615666671015777874999999999999874899999999999999997------02
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 3398889989999998623
Q 001571 1032 KNRDKFTQNLTVFRHEFRV 1050 (1051)
Q Consensus 1032 ~nr~~F~~nl~~F~~~vr~ 1050 (1051)
..+.+|++.+..|.-++|.
T Consensus 988 ~~~~~f~~~~rdf~~~~~~ 1006 (1049)
T 3m1i_C 988 KDLVVFKGTLRDFLVQIKE 1006 (1049)
T ss_dssp TCHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 8899999999998486564
No 5
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=303.42 Aligned_cols=883 Identities=12% Similarity=0.103 Sum_probs=535.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHH
Q ss_conf 4899999999982599999999999998741049421999999983089816899999999999862--26897889999
Q 001571 3 SLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALTPYALMLASSSLLKQVTE--HSLALQLRLDI 80 (1051)
Q Consensus 3 ~i~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~~l 80 (1051)
++++++++++.+|+| +++.|++|+++|.+|+++|++|..|..||+.+++++++|+|+++|++.|++ ..+|+++|.++
T Consensus 5 d~~~l~~~l~~~~~~-d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 83 (971)
T 2x1g_F 5 DIARLEEAVVSFYRS-NSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREEL 83 (971)
T ss_dssp ------CTHHHHHTS-TTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHCCHHHHHHH
T ss_conf 599999999987699-9999999999999987497989999999835994989999999999999715864999999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHC
Q ss_conf 9999999984199812789999999999998502689824425799999998313------7404888999999999730
Q 001571 81 RNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQA------TSDHYAIGLKILNQLVSEM 154 (1051)
Q Consensus 81 r~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~------~~~~~~igl~iL~~lv~Ef 154 (1051)
|+++++++.+.. +.+++|++|++.+++.|+|++|+ .|+ +++.++.+.++++ ++.++..++.+|+.+.+|.
T Consensus 84 r~~ll~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p-~Wp--~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi 159 (971)
T 2x1g_F 84 KQKILESIVRFA-GGPKIVLNRLCISLGAYIVHMLG-EWP--GAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEA 159 (971)
T ss_dssp HHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHTTC-C--------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999867-99878999999999999997062-243--79999999971533456787889999999999859988
Q ss_pred CCCCCCCCHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCC
Q ss_conf 499999645875766641110102889999999997554546----88999999999857145--326666877786655
Q 001571 155 NQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDV----ASRLQELALSLCLKCLS--FDFVGTSIDESSEEF 228 (1051)
Q Consensus 155 ~~~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~----~~~l~~~~L~l~~~~Ls--w~f~~~~~de~~~d~ 228 (1051)
.+.+ +. .+....+..++. .++.++.+...++....... ...+...+++++..++. |.+.+
T Consensus 160 ~~~~-~~--~~r~~~~~~l~~-~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---------- 225 (971)
T 2x1g_F 160 QVIH-TS--VKRVVLRAEIAK-RVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---------- 225 (971)
T ss_dssp HHCC-CS--SCHHHHHHHHHT-THHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----------
T ss_pred HCCC-CH--HHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC----------
T ss_conf 2468-57--899999999998-799999999999855467888864236799999999999825783865----------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHH----HH-----------HCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 5556887730001696079999999----84-----------14985449999999987200246789928899999999
Q 001571 229 GTVQIPSAWRPVLEDPSTLQIFFDY----YA-----------ITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHL 293 (1051)
Q Consensus 229 ~~~~~p~~W~~~l~~~~~l~~lf~~----y~-----------~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~ 293 (1051)
..+.+++.+|++ +. ...++++..+++|+.++.+.+. .+++...+..+
T Consensus 226 -------------~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~-----~~~~~~~~~~l 287 (971)
T 2x1g_F 226 -------------GCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPD-----CHNYPKTAFVL 287 (971)
T ss_dssp -------------GHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSG-----GGGCHHHHHHH
T ss_pred -------------CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-----CCCCHHHHHHH
T ss_conf -------------663199999864355302323566555676774799999999999976801-----13208899999
Q ss_pred HHHHHHHHHC---CCCCCC---CHHHHHHHHHHHHHHHHCCHHHHH----C-----CCCHHHHHHHHHHHHHHHHHHH--
Q ss_conf 9989998503---767899---123899999985544212513554----0-----0184999999999999863210--
Q 001571 294 MTGTKEILQT---GQGLAD---HDNYHEYCRLLGRFRVNYQLSELV----N-----VEGYSDWIQLVAEFTLKSLQSW-- 356 (1051)
Q Consensus 294 l~~~~~il~~---~~~l~~---~~~~~~~~~~l~rl~~~~~l~~l~----~-----~~~~~~~l~~l~~~T~~~l~~~-- 356 (1051)
+.++..+... ...-.| ++....+|+++.++..++. ..+. + .+.+..++..+-.+ ....
T Consensus 288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~ll~~----~~~~~~ 362 (971)
T 2x1g_F 288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHS-TLLLSGITSADPELSILVHRIVQEILHC----TDKPGI 362 (971)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTH-HHHHHHHHTCCHHHHHHHHHHHHHHHHH----HHCSSC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCHHHHHHHHHHHHH----HCCCCC
T ss_conf 99999868999999856565406899999999999999999-9999873157653549999999999999----758888
Q ss_pred -CCCCCCHHHHHHHHHHHHCCCC-CC-CCCCC---CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH----
Q ss_conf -1256718999999998412757-65-68996---43554379999999860001011245888899998868879----
Q 001571 357 -QWASSSVYYLLGLWSRLVTSVP-YL-KGDAP---SLLDEFVPKITEGFITSRFNSVQAGFPDDLSDNPLDNVELL---- 426 (1051)
Q Consensus 357 -~~~~~s~~~lL~~W~~lv~~~~-~~-~~~~~---~~l~~~~~~I~~~yi~~~l~~~~~~~~~e~~e~~~~d~~~~---- 426 (1051)
..+++.....+++|..+..... .. ....+ ..+..+..++....+ .++..++ .+|.+++..+|++.+
T Consensus 363 ~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~-~~~~~p~---~~~~~~~d~~e~~~f~~~R 438 (971)
T 2x1g_F 363 YPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV-RKSEQPD---EKSLAKWSSDDLECFRCYR 438 (971)
T ss_dssp TTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH-HHTSCCC---TTTTSCSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHCCCC---CCCCCCCCHHHHHHHHHHH
T ss_conf 88631245878999999999997413310008999999999999999999-9861999---6243356775799999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99983023221034123899999959999999999851178995134667777999999999983044346788642001
Q 001571 427 QDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEV 506 (1051)
Q Consensus 427 ~~~le~i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~ 506 (1051)
..--+.+-.+++..++.+.+.+.+.+.+.++.|.. ...+|. +..-.++..|++..+-... ..+
T Consensus 439 ~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~----~~~~w~-------~~eaal~~l~~iae~~~~~-----~~~- 501 (971)
T 2x1g_F 439 QDISDTFMYCYDVLNDYILEILAAMLDEAIADLQR----HPTHWT-------KLEACIYSFQSVAEHFGGE-----EKR- 501 (971)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHH----CTTCCH-------HHHHHHHHHHHTTTC-----------C-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCHH-------HHHHHHHHHHHHHHHCCHH-----HHH-
T ss_conf 99999999999997099999999999999973468----987389-------9999999999998354803-----347-
Q ss_pred CCHHHHHHHHHHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 0337899999986-304666653111244078999999999999687871567766458889999870998768799999
Q 001571 507 LDAELSARVLQLI-NVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVI 585 (1051)
Q Consensus 507 ~d~~L~~~v~~l~-~l~~~~~~~~~~~~~s~~~l~~a~l~fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~~~~~~~~~~ 585 (1051)
.+. .++.++ ++... + ..+++..+.+|.+++|+. ++.++. + -...+++.+
T Consensus 502 ---~l~-~l~~~l~~l~~~--d-------~~~~vr~~a~~~l~~~~~-~l~~~~-------~---------~l~~vl~~l 551 (971)
T 2x1g_F 502 ---QIP-RLMRVLAEIPYE--K-------LNVKLLGTALETMGSYCN-WLMENP-------A---------YIPPAINLL 551 (971)
T ss_dssp ---HHH-HHHHHHHHSCTT--T-------SCHHHHHHHHHHHHHTHH-HHC--------------------CHHHHHHHH
T ss_pred ---HHH-HHHHHHHHCCCC--C-------CCHHHHHHHHHHHHHHHH-HHHCCH-------H---------HHHHHHHHH
T ss_conf ---799-999999856765--3-------678999999999998788-886088-------9---------899999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCC-CCCHHHHHHHHHHHHH
Q ss_conf 999972016878816799999999999840410023771553699999830007899753333-4323679999999998
Q 001571 586 VGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEYR-CSRSRTTFYYTIGWLI 664 (1051)
Q Consensus 586 l~ki~~nL~~~~~~~~i~~~~~~Ll~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~r~~~~~~l~~~~ 664 (1051)
++.+ + ++|...+...|..+++. |+..+ .|.+..+++.... .++.+. ..+.+..+|++++.++
T Consensus 552 ~~~l--~-------~~v~~~A~~al~~l~~~---~~~~l-~p~~~~ll~~l~~----~l~~~~~~~~~~~~~~~ai~~i~ 614 (971)
T 2x1g_F 552 VRGL--N-------SSMSAQATLGLKELCRD---CQLQL-KPYADPLLNACHA----SLNTGRMKNSDSVRLMFSIGKLM 614 (971)
T ss_dssp HHHH--H-------SSCHHHHHHHHHHHHHH---CHHHH-HHHHHHHHHHHHH----HHHSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHH--C-------HHHHHHHHHHHHHHHHH---HHHHC-CCCHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9874--8-------58899999999999999---88862-3007999999999----97278999289999999999999
Q ss_pred HC---CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH--------HHHHHHHHHH
Q ss_conf 23---679389999469899999984069975566179999999999997457762046115--------8989998822
Q 001571 665 FM---EESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRT--------YGLLFDWLYP 733 (1051)
Q Consensus 665 ~~---~~~~~~~~~~l~pl~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~l~Gi~~a~~~~~~--------~~~lf~~i~~ 733 (1051)
.. +....++..++.|+...|.++..++. .+++.+..++..+..+.|++.+...... ...+ .-+.+
T Consensus 615 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~---~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~ 690 (971)
T 2x1g_F 615 SLLRPEEIPKYLDIIVSPCFEELQAICQADS---KTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPV-LLVMQ 690 (971)
T ss_dssp HTSCTTHHHHHHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHHHHHHHHHHTC-------------CC-HHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH-HHHHH
T ss_conf 7299999999999999899999999985689---9822599999999999999841677768533345678836-99999
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 00479999743005997137899999999974123511124788113546999999999999765079981116765565
Q 001571 734 AHMPLLLKGISHWTDTPEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGSRVLSLPNAADIYAYKYK 813 (1051)
Q Consensus 734 ~~~~~~~~l~~~y~~~~~v~~~iLkl~~~~~~n~~~ri~f~~~s~~~~~lf~~~~~ii~~y~~~~~~~~~~~~~~~~~~k 813 (1051)
..++.+..+++.|.+++.++..+.+++..++..-+. .+ .| .+-..+..++..|.. .. ..
T Consensus 691 ~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~--~~---~p---~l~~~~~~l~~~~~~-------~~------~~ 749 (971)
T 2x1g_F 691 RTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRS--SF---QP---MLQDLCLFIVASFQT-------RC------CA 749 (971)
T ss_dssp TTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-------CT---HHHHHHHHHHHHCC---------C------CH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH--HC---CC---CHHHHHHHHHHHHHC-------CC------CH
T ss_conf 999999999986436378999999999999986144--04---25---278999999999866-------88------34
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH----HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 599999999982609963345655469971899999----9999640568246860286489999999999955377664
Q 001571 814 GMWICFTILARALAGNYVNFGVFELYGDRALSDALD----IALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFIL 889 (1051)
Q Consensus 814 ~i~~~l~il~~~l~~~~vnfg~~~~y~D~~~~~~~~----~~l~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~ 889 (1051)
..+.++..++.+ ||....+. +.+.+.+. .+++++-..+.++..+.|+++..||.|+..+...+|..+.
T Consensus 750 ---~~l~l~~~~i~~----~~~~~~~~-~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~ 821 (971)
T 2x1g_F 750 ---PTLEISKTAIVM----FFKDEGCK-PLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLE 821 (971)
T ss_dssp ---HHHHHHHHHHTT----CCC------HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGG
T ss_pred ---HHHHHHHHHHHH----HCCCCCHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHC
T ss_conf ---999999999999----58890058-9999999999999999986065467764844899999999999986859981
Q ss_pred CCCHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 589789-9999999998204888477859999999999999884136899997478999988720999189999999999
Q 001571 890 NLNTNT-FMHIVGSLESGLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEI 968 (1051)
Q Consensus 890 ~l~~~~-f~~i~~sl~~gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 968 (1051)
. ++. +..++.+...++++.+++..+.++..+..+.+.- +. .+... +.+. .....+++.++..
T Consensus 822 ~--s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~------~~---~~~~~---~~~~---~~g~~l~~~l~~~ 884 (971)
T 2x1g_F 822 D--KTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQS------RN---HAHVT---EVVL---ATGEQTLYTAMMC 884 (971)
T ss_dssp C--TTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHH------TT---CHHHH---HHHH---HHHHHHHHHHHHH
T ss_pred C--CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC------CC---HHHHH---HHHH---HHHHHHHHHHHHH
T ss_conf 8--82128999999999828787789999999999998607------85---68999---9999---9679999999997
Q ss_pred HHCCCCCCHH-HCHHHHHHHHHCCHHHHHHHHHHHHH--CCC-HHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9416777501-00335588881697899999999980--499-13688999999-9977343104692339888998999
Q 001571 969 VLFEDCGNQW-SLSRPMLSLILISEQVFSDLKAQILT--SQP-VDQHQRLSVCF-DKLMADVARSLDSKNRDKFTQNLTV 1043 (1051)
Q Consensus 969 ll~~~~~~~~-~~s~~L~~li~~~~~~f~~l~~~li~--~q~-~~~~~~l~~af-~~L~~~i~~~l~~~nr~~F~~nl~~ 1043 (1051)
+...-.+... .++..|..++..+|+.+..+..+.+. ..| ....+.-.+.| .+|+. .|.++.+|++.++.
T Consensus 885 ~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~------~~~~~r~~~~~~~~ 958 (971)
T 2x1g_F 885 VGYLTPRSQVDKFADILLAMNRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRYTALIIK------EKVNKRLLQQHLSE 958 (971)
T ss_dssp HHTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCSSSCHHHHHHHHHHHHH------CSSCHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH------HHHCHHHHHHHHHH
T ss_conf 564697567899999999999978599999999982636899876999999999999999------88471769999999
Q ss_pred HHHHHHCC
Q ss_conf 99986239
Q 001571 1044 FRHEFRVK 1051 (1051)
Q Consensus 1044 F~~~vr~~ 1051 (1051)
|....|+.
T Consensus 959 f~~~~r~~ 966 (971)
T 2x1g_F 959 MAMKTRGL 966 (971)
T ss_dssp HHHHHHC-
T ss_pred HHHHHCCC
T ss_conf 99998074
No 6
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=1.00 E-value=1 Score=294.85 Aligned_cols=908 Identities=12% Similarity=0.110 Sum_probs=537.1
Q ss_pred HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCCCCHH----
Q ss_conf 4899999999982599-999999999998741049421999999983089--816899999999999862268978----
Q 001571 3 SLAQLEALCERLYNSQ-DSVERAHAENTLKCFSVNTDYISQCQFILDNAL--TPYALMLASSSLLKQVTEHSLALQ---- 75 (1051)
Q Consensus 3 ~i~~lE~~~~~l~~~~-~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~--~~~~~f~a~~~L~~~i~~~~l~~~---- 75 (1051)
+++++++|.+..|.|+ +++.|++|+++|.+|+++|++|..|..||.+++ +++++|||+++|++.|+ .++++
T Consensus 4 ~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~--~l~~e~~~~ 81 (980)
T 3ibv_A 4 SAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR--EWNNESNLL 81 (980)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH--HCCTTTSHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH--HCCHHHHHH
T ss_conf 999999999998489999999999999999987394599999999837999989999999999999987--588201088
Q ss_pred HHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHH
Q ss_conf 89999999999998419-981278999999999999850268982442579999999831374-0488899999999973
Q 001571 76 LRLDIRNYLINYLAKRG-PELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATS-DHYAIGLKILNQLVSE 153 (1051)
Q Consensus 76 ~k~~lr~~ll~~l~~~~-~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~-~~~~igl~iL~~lv~E 153 (1051)
++..+|+++++++.+.. .+.++++++|++.+++.++|+.||+.|+ +++.++.+.+++++. ......+++|..+-+|
T Consensus 82 ~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp--~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EE 159 (980)
T 3ibv_A 82 ELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWN--DFFASLQGVIAASSQSEFSNFYLKVLLSIGDE 159 (980)
T ss_dssp HHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999970577786799999999999999986854475--39999999856897268999999999985899
Q ss_pred CCCCCCCCCHHHHHHH---HHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 0499999645875766---6411101028899999999975545468899999999985714532666687778665555
Q 001571 154 MNQPNPGLPSTHHRRV---ACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGT 230 (1051)
Q Consensus 154 f~~~~~~~~~~~hrk~---~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~ 230 (1051)
.......++...+.|. +..+++.+++.|+..+..+|.+........+...+|+++..+++|...+.
T Consensus 160 v~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~----------- 228 (980)
T 3ibv_A 160 IADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININL----------- 228 (980)
T ss_dssp HCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHH-----------
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHH-----------
T ss_conf 972323667887766599999998662889999999999987412889999999999999986527786-----------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCC
Q ss_conf 5688773000169607999999984149854499999999872002467899288999999999989998503767-899
Q 001571 231 VQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQG-LAD 309 (1051)
Q Consensus 231 ~~~p~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~-l~~ 309 (1051)
+.++++++.+|+.. ..++++..|.+||.++.+.+.. .+++...+..+ ++.+++..-.. -.|
T Consensus 229 ----------i~~~~ll~~l~~~L--~~~~~r~~A~ecL~ei~~k~~~----~~~k~~li~~l--~L~~~~~~l~~~~~D 290 (980)
T 3ibv_A 229 ----------IVNEPCMNLLYSFL--QIEELRCAACETMTEIVNKKMK----PLEKLNLLNIL--NLNLFFSKSQEQSTD 290 (980)
T ss_dssp ----------HHCHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHH--HHHHHHCC-----CC
T ss_pred ----------HHCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHH--HHHHHHHHHHCCCCC
T ss_conf ----------50301899999982--8867799999999999973789----56689999997--579999987445556
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHCCCC---------HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 1238999999855442125135540018---------4999999999999863210125671899999999841275765
Q 001571 310 HDNYHEYCRLLGRFRVNYQLSELVNVEG---------YSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYL 380 (1051)
Q Consensus 310 ~~~~~~~~~~l~rl~~~~~l~~l~~~~~---------~~~~l~~l~~~T~~~l~~~~~~~~s~~~lL~~W~~lv~~~~~~ 380 (1051)
.+....+|+++.-+...+... ...+. -..-+..+..+-..+.... +.+.....+.||..++....+.
T Consensus 291 ~d~~~~la~L~~~~ge~l~~~--~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~--~deVs~~t~~Fw~~~l~~~~~~ 366 (980)
T 3ibv_A 291 PNFDEHVAKLINAQGVELVAI--KSDPSELSPELKENCSFQLYNLFPYLIRYLSDD--YDETSTAVFPFLSDLLVSLRKE 366 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS--SHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHC
T ss_conf 899999999999999999987--358655552556668999999999999996798--0639999999999999998724
Q ss_pred CC--CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHH----HHHCCCHHHHHHHHHHHHH
Q ss_conf 68--9964355437999999986000101124588889-999886887999983023----2210341238999999599
Q 001571 381 KG--DAPSLLDEFVPKITEGFITSRFNSVQAGFPDDLS-DNPLDNVELLQDQLDCFP----YLCRFQYENSGLYIINTME 453 (1051)
Q Consensus 381 ~~--~~~~~l~~~~~~I~~~yi~~~l~~~~~~~~~e~~-e~~~~d~~~~~~~le~i~----~l~r~~~~~t~~~L~~ll~ 453 (1051)
.. ..+.....+.+++... +..|+.-++.. +.+ |++.+|++.+.+.+..++ .++...++.....+.+.+.
T Consensus 367 ~~~~~~~~~~~~~l~~Ll~~-li~k~~yp~d~---~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~ 442 (980)
T 3ibv_A 367 SSSKELSASLKEFLKSLLEA-IIKKMKYDESQ---EWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAIT 442 (980)
T ss_dssp TTSCCCCHHHHHHHHHHHHH-HHHTTSCCTTC---CCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH-HHHHCCCCCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 42234337899999999999-99872289865---666665554799999999999999999996484988888999999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999851178995134667777999999999983044346788-64200103378999999863046666531112
Q 001571 454 PILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVKIKQCTGCS-LESQEVLDAELSARVLQLINVTDSGLHSQRYC 532 (1051)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~-~~~~~~~d~~L~~~v~~l~~l~~~~~~~~~~~ 532 (1051)
..+++. .. +++ . .-+.++.-.++..|++-.|-...+.. .++.+.++ .+...+..+++ ... +
T Consensus 443 ~~l~~~---l~--~~~--~--~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp-~l~~ll~~ll~---s~i-----~ 504 (980)
T 3ibv_A 443 SSLSTA---AT--LSP--E--NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPT-VLSQILALVTT---SQV-----C 504 (980)
T ss_dssp HHHHHH---TT--SCH--H--HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBC-HHHHHHHHHHH---SST-----T
T ss_pred HHHHHH---HC--CCC--C--CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH-HHHHHHHHHHH---CCC-----C
T ss_conf 999987---15--558--9--98799999999999987653431236675521068-99999999984---788-----8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 44078999999999999687871567766458889999870998768799999999972016878816799999999999
Q 001571 533 ELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLE 612 (1051)
Q Consensus 533 ~~s~~~l~~a~l~fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~~~~~~~~~~l~ki~~nL~~~~~~~~i~~~~~~Ll~~ 612 (1051)
....|++..+..|.+.||.+-.- .+. ..+...++.+....-....++.|...|..+|..
T Consensus 505 ~~~hp~V~~~~~~~l~rys~~~~-~~~--------------------~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~ 563 (980)
T 3ibv_A 505 RHPHPLVQLLYMEILVRYASFFD-YES--------------------AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYR 563 (980)
T ss_dssp TCCCHHHHHHHHHHHHHTGGGGG-TCC--------------------TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH-CCC--------------------HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89978999999999999999985-193--------------------549999999826002669976599999999999
Q ss_pred HHCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCC-----------------CCHHHHHHHHHHHHHHCC-----CCH
Q ss_conf 8404100237715536999998300078997533334-----------------323679999999998236-----793
Q 001571 613 LASGYMTGKLLLKLDTIKFIVANHTREHFPFLEEYRC-----------------SRSRTTFYYTIGWLIFME-----ESP 670 (1051)
Q Consensus 613 l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~l~~~~~-----------------~~~r~~~~~~l~~~~~~~-----~~~ 670 (1051)
+++ .|+..+ .|.+..+++....- ......|.. ...+..+|+++|.++... ...
T Consensus 564 f~~---~~~~~L-~~~~~~il~~l~~l-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~ 638 (980)
T 3ibv_A 564 FVK---SIKKQV-VNYTESSLAMLGDL-LNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQA 638 (980)
T ss_dssp HHH---HTTTTC-SSSHHHHHHHTTGG-GCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHH---HHHHHH-HHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 999---866874-45899999999986-1686788875322221045420367714788999999999927899878999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHCCHHHHHHHHHHHCCC
Q ss_conf 8999946989999998406997556617999999999999745776204611-589899988220047999974300599
Q 001571 671 VKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRR-TYGLLFDWLYPAHMPLLLKGISHWTDT 749 (1051)
Q Consensus 671 ~~~~~~l~pl~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~l~Gi~~a~~~~~-~~~~lf~~i~~~~~~~~~~l~~~y~~~ 749 (1051)
++++.++.|+-..+........+ -.++.+ .+.+++..+..++++..... ......+.+.+. .+.+...++.|..+
T Consensus 639 ~~l~~ll~pl~~~l~~~l~~~~~-~~~~~~--~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~-~~~il~~l~~~~~~ 714 (980)
T 3ibv_A 639 LYCDSLINALIGKANAALSSDLS-ALENII--SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKA-SDEIFLILDRMGFN 714 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC---CHHH--HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHH-HHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CCCHHH--HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHCCCC
T ss_conf 99999999999999998864135-863888--999999999997316786468888189999999-99999998826786
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEECCCCCCCHH-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 71378999999999741235111247881135-46999999999999765079981116765565599999999982609
Q 001571 750 PEVTTPLLKFMAEFVLNKAQRLTFDSSSPNGI-LLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAG 828 (1051)
Q Consensus 750 ~~v~~~iLkl~~~~~~n~~~ri~f~~~s~~~~-~lf~~~~~ii~~y~~~~~~~~~~~~~~~~~~k~i~~~l~il~~~l~~ 828 (1051)
..|....-+++...+..-+ +... ++-+.+..++..|. ...+.+..-++..+.+..++
T Consensus 715 ~~irea~~~~~~r~i~~lg---------~~~~p~lp~~i~~ll~~~~-------------~~e~~~fL~l~~qli~~f~~ 772 (980)
T 3ibv_A 715 EDIRGAVRFTSGRIINVVG---------PDMLPKVPQLISILLNSID-------------MNELVDVLSFISQLIHIYKD 772 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTH---------HHHTTTHHHHHHHHHHHCC-------------TTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHCC---------HHHHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHHHHHHHH
T ss_conf 7899999999999999755---------7679878999999983698-------------79999999999999999988
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Q ss_conf 96334565546997189999999996405682---4686028648999999999995537766458--978999999999
Q 001571 829 NYVNFGVFELYGDRALSDALDIALKMTLSIPL---ADILAFRKLTKAYFAFLEVLFSSHITFILNL--NTNTFMHIVGSL 903 (1051)
Q Consensus 829 ~~vnfg~~~~y~D~~~~~~~~~~l~l~l~ip~---~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l--~~~~f~~i~~sl 903 (1051)
+..++ + +.-+..++..++.++ .-|. +.+..-+.+.++||.++..+.......+.-- +...|..++.++
T Consensus 773 ~~~~~--l----~~ll~~l~~~if~~l-~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l 845 (980)
T 3ibv_A 773 NMMEI--T----NRMLPTLLMRIFSSL-SAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSI 845 (980)
T ss_dssp TSHHH--H----HHHHHHHHHHHHHHT-TC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHH
T ss_pred HHHHH--H----HHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHH
T ss_conf 89999--9----988999999999971-6898994799999999999999999998378604521776567899999999
Q ss_pred HH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCHH
Q ss_conf 98-20488847785999999999999988413689999747899998872099918999999999994167775010033
Q 001571 904 ES-GLKGLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSLSR 982 (1051)
Q Consensus 904 ~~-gl~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~s~ 982 (1051)
.. +..+.|+...+.|+..+.++++..... + + .| ++.+++ +. +....|.+.+.+.++....-++
T Consensus 846 ~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~----~-~-~~---gf~~f~------~~-~~~~~f~~p~~~~f~~~Daq~~ 909 (980)
T 3ibv_A 846 LHFANLVGEPATQKSSIALVSKMVSLWGGK----D-G-IA---GFENFT------LS-LTPLCFEMPVNPNFNTRDGQSL 909 (980)
T ss_dssp HHHC-----CHHHHHHHHHHHHHHHC-------------C---CHHHHH------HH-HHHHHHHGGGC----------C
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHCCC----C-C-CH---HHHHHH------HH-HHHHHHHHHCCCCCCHHHHHHH
T ss_conf 998266787489989999999999997799----8-6-21---799999------99-9999998516988890238899
Q ss_pred HHHHHH-HCCHHHHHHHHH----HHHHCC-C-HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 558888-169789999999----998049-9-13688999999997734310469233988899899999986239
Q 001571 983 PMLSLI-LISEQVFSDLKA----QILTSQ-P-VDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFRVK 1051 (1051)
Q Consensus 983 ~L~~li-~~~~~~f~~l~~----~li~~q-~-~~~~~~l~~af~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr~~ 1051 (1051)
.+++=| .+-...|+..++ -|.+.. | ....+.+.+.|.+-+ .......|++-|..|.+..|++
T Consensus 910 ~~~~e~~~~~k~~~~~~g~~~~~~l~~~~lp~~~~~~~~~~~~~~~l-------~~~~~k~f~~~~~~~~~~~~~~ 978 (980)
T 3ibv_A 910 VVLGELAGLQKIILEKLGDIYKSYLVTVYFPTVNFPDVMASEYLQAL-------SNLDSRSFKQFFQKFIQALKSG 978 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC----CCHHHHHHHC-----------------------CHHHHC-
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999962789999999833776898989999999998-------6116236999999999986358
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=1.00 E-value=1 Score=238.58 Aligned_cols=597 Identities=14% Similarity=0.158 Sum_probs=361.4
Q ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHH--CCCCHHHHH
Q ss_conf 489999999998259-9999999999998741049421999999983-089816899999999999862--268978899
Q 001571 3 SLAQLEALCERLYNS-QDSVERAHAENTLKCFSVNTDYISQCQFILD-NALTPYALMLASSSLLKQVTE--HSLALQLRL 78 (1051)
Q Consensus 3 ~i~~lE~~~~~l~~~-~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~-~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~ 78 (1051)
.+++++++++.+|.| ++++.|++|++.|.+|+++|++|..|..+|. .+.+++++|+|+++|++.|++ ..++.++|.
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~ 88 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV 88 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 99999999999858999869999999999998839527999999997138998999999999999998715669999999
Q ss_pred HHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999984199---81278999999999999850268982442579999999831374048889999999997304
Q 001571 79 DIRNYLINYLAKRGP---ELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMN 155 (1051)
Q Consensus 79 ~lr~~ll~~l~~~~~---~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~igl~iL~~lv~Ef~ 155 (1051)
.||+++++++.+... +.+++|++|++.+++.|+|++||+.|+ +++.++.+.++ ++..++..++.+|..+.+|+.
T Consensus 89 ~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp--~ll~~L~~~~~-~~~~~~e~~L~iL~~L~Eev~ 165 (1204)
T 3a6p_A 89 YLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWP--DMLIELDTLSK-QGETQTELVMFILLRLAEDVV 165 (1204)
T ss_dssp HHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCT--THHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999873034555565799999999999999986813125--89999999864-898899999999999999870
Q ss_pred CCCCCCCHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999996458757666411101028899999999975545---------------46889999999998571453266668
Q 001571 156 QPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKS---------------DVASRLQELALSLCLKCLSFDFVGTS 220 (1051)
Q Consensus 156 ~~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~---------------~~~~~l~~~~L~l~~~~Lsw~f~~~~ 220 (1051)
..+. ....+.++.+..+++. ++.||..+..+|++... +....++..+|+++.++++|...+..
T Consensus 166 ~~~~-~~~~r~~~l~~~l~~~-~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i 243 (1204)
T 3a6p_A 166 TFQT-LPPQRRRDIQQTLTQN-MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHI 243 (1204)
T ss_dssp TSCC-SCHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHH
T ss_pred CCCC-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 6220-6899999999999999-9999999999999987877304520000112244599999999999999842688999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH----HHH
Q ss_conf 7778665555568877300016960799999998414985449999999987200246789928899999999----998
Q 001571 221 IDESSEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHL----MTG 296 (1051)
Q Consensus 221 ~de~~~d~~~~~~p~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~----l~~ 296 (1051)
. ++ ++.+++++|..+ .+++++..|++||.++++.+.. .+++..++..+ +.+
T Consensus 244 ~-~~------------------~~~ll~~l~~~l--~~~~lr~~A~ecL~~i~s~~~~----~~~~~~li~~l~~~~l~~ 298 (1204)
T 3a6p_A 244 T-AE------------------NCKLLEILCLLL--NEQELQLGAAECLLIAVSRKGK----LEDRKPLMVLFGDVAMHY 298 (1204)
T ss_dssp H-TT------------------TSHHHHHHHHGG--GCTTTHHHHHHHHHHHHTCCSC----HHHHGGGGGGGSHHHHHH
T ss_pred H-HC------------------CCHHHHHHHHHC--CCHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHH
T ss_conf 8-55------------------552999999975--9888899999999999948898----256789999971689999
Q ss_pred HHHHHH--CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHCCCCCC-H
Q ss_conf 999850--37678991238999999855442125135540----------0184999999999999863210125671-8
Q 001571 297 TKEILQ--TGQGLADHDNYHEYCRLLGRFRVNYQLSELVN----------VEGYSDWIQLVAEFTLKSLQSWQWASSS-V 363 (1051)
Q Consensus 297 ~~~il~--~~~~l~~~~~~~~~~~~l~rl~~~~~l~~l~~----------~~~~~~~l~~l~~~T~~~l~~~~~~~~s-~ 363 (1051)
+..... ...++ ++...++++-++++...+.- .+.. .+.+..+++.+..+|.. .++. .
T Consensus 299 l~~~~~~~~~~~~--~e~d~e~~k~l~~ll~~lg~-~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~-------~~~~vs 368 (1204)
T 3a6p_A 299 ILSAAQTADGGGL--VEKHYVFLKRLCQVLCALGN-QLCALLGADSDVETPSNFGKYLESFLAFTTH-------PSQFLR 368 (1204)
T ss_dssp HHHHHHTCCCCSC--CHHHHHHHHHHHHHHHHHHH-HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTS-------SCHHHH
T ss_pred HHHHHHCCCCCCC--CCHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC-------CCHHHH
T ss_conf 9998633787887--60789999999999999999-9999981232346716799999999999818-------207868
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH--HHHCCCCCCCCC--CC---CCCCCCCCH-H----HHHHHHH
Q ss_conf 9999999984127576568996435543799999998--600010112458--88---899998868-8----7999983
Q 001571 364 YYLLGLWSRLVTSVPYLKGDAPSLLDEFVPKITEGFI--TSRFNSVQAGFP--DD---LSDNPLDNV-E----LLQDQLD 431 (1051)
Q Consensus 364 ~~lL~~W~~lv~~~~~~~~~~~~~l~~~~~~I~~~yi--~~~l~~~~~~~~--~e---~~e~~~~d~-~----~~~~~le 431 (1051)
...+++|..+...... .....+..+.+++..... ..|+.-|+.... .+ +|++..+|. + ..++..+
T Consensus 369 ~~~l~fW~~ll~~~~~---~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d 445 (1204)
T 3a6p_A 369 SSTQMTWGALFRHEIL---SRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGE 445 (1204)
T ss_dssp HHHHHHHHHHHSCTTT---TTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC---CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999706444---6547899989999999999989715864468841134322558708999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCC--HH-HHHHHHHHH-----HHHHHHHHHHCCCCCCCCCC
Q ss_conf 02322103412389999995999999999985-11789951--34-667777999-----99999998304434678864
Q 001571 432 CFPYLCRFQYENSGLYIINTMEPILQSYTERA-RMQTGDKS--EI-SVIEAKLAW-----IVHIIAAIVKIKQCTGCSLE 502 (1051)
Q Consensus 432 ~i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~-~~~~~~~~--~l-~~~~e~L~W-----li~i~g~~l~~~~~~~~~~~ 502 (1051)
.+-.+++..+..+.+.+.+.+.+.+....... .|+.-+.. +. .+-...-.| .+..+++++.+-... .+
T Consensus 446 ~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~---~e 522 (1204)
T 3a6p_A 446 VMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRT---LN 522 (1204)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHH---SC
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC---CC
T ss_conf 999998528899999999999999753400445665322123556545768889999999999999999998401---24
Q ss_pred CCCCCCHHHHHHHHHHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf 20010337899999986-30466665311124407899999999999968787156776645888999987099876879
Q 001571 503 SQEVLDAELSARVLQLI-NVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLL 581 (1051)
Q Consensus 503 ~~~~~d~~L~~~v~~l~-~l~~~~~~~~~~~~~s~~~l~~a~l~fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~~~~~~ 581 (1051)
.+.+...+...++..+ ++.. . .|.+....+..++++.. |+..+ ...
T Consensus 523 -~~~l~~~~~~~Ll~~ll~~~~----------~-~p~l~~~~i~~l~~l~~-~~~~~--------------------p~~ 569 (1204)
T 3a6p_A 523 -REEIPVNDGIELLQMVLNFDT----------K-DPLILSCVLTNVSALFP-FVTYR--------------------PEF 569 (1204)
T ss_dssp -TTCCCHHHHHHHHHHHHHCCC----------S-CHHHHHHHHHHHHHHGG-GGGTC--------------------GGG
T ss_pred -CCCCCHHHHHHHHHHHHHCCC----------C-CHHHHHHHHHHHHHHHH-HHHCC--------------------CHH
T ss_conf -453338999999999983788----------7-75799999999998787-88629--------------------257
Q ss_pred HHHHHHHHHHHCCCCC----------CCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHCCCC--CCCCCCCCCC
Q ss_conf 9999999972016878----------816799999999999840410023771553699999830007--8997533334
Q 001571 582 LNVIVGKIATNLKCYT----------ESQEVIDHTLSLFLELASGYMTGKLLLKLDTIKFIVANHTRE--HFPFLEEYRC 649 (1051)
Q Consensus 582 ~~~~l~ki~~nL~~~~----------~~~~i~~~~~~Ll~~l~~~~~~~~~l~~~~~~~~l~~~~~~~--~~~~l~~~~~ 649 (1051)
+...+++++..+..++ ...++...|...|..++.. |+..+ .|.+..+.+....- ....+ .
T Consensus 570 L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~---~~~~L-~p~~~~i~~~~~~~l~~~~~l--~-- 641 (1204)
T 3a6p_A 570 LPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRD---YPQLV-LPNFDMLYNHVKQLLSNELLL--T-- 641 (1204)
T ss_dssp HHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHH---CHHHH-GGGHHHHHHHHHHHHHSTTTS--C--
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHCCCCC--C--
T ss_conf 999999999861568843124663189999999999999999997---46878-789999999999998476514--6--
Q ss_pred CCHHHHHHHHHHHHHHC--C--CCHHHHHHHHHHHHHHHHH
Q ss_conf 32367999999999823--6--7938999946989999998
Q 001571 650 SRSRTTFYYTIGWLIFM--E--ESPVKFKSSMDPLLQVFIS 686 (1051)
Q Consensus 650 ~~~r~~~~~~l~~~~~~--~--~~~~~~~~~l~pl~~~~~~ 686 (1051)
.+-+..+|++++.+... . ....+++.++.|+...|.+
T Consensus 642 ~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 642 QMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88899999999999636797999999999999999998746
No 8
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=1.00 E-value=1 Score=153.68 Aligned_cols=251 Identities=17% Similarity=0.274 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHHCCCCCEECCCCCCCH---HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 37899999999974123511124788113---546999999999999765079981116765565599999999982609
Q 001571 752 VTTPLLKFMAEFVLNKAQRLTFDSSSPNG---ILLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAG 828 (1051)
Q Consensus 752 v~~~iLkl~~~~~~n~~~ri~f~~~s~~~---~~lf~~~~~ii~~y~~~~~~~~~~~~~~~~~~k~i~~~l~il~~~l~~ 828 (1051)
+-..+||++..++++. ..+.. -++-.-+..++..|.+ +.|..+ ++|.+. ++..+.+.+++
T Consensus 45 vKkeiLkLiet~i~~~--------~d~~~v~~~~ippLl~~VL~DY~~---~vp~aR--epeVL~----l~~tii~kl~~ 107 (321)
T 1w9c_A 45 VKRETLKLISGWVSRS--------NDPQMVAENFVPPLLDAVLIDYQR---NVPAAR--EPEVLS----TMAIIVNKLGG 107 (321)
T ss_dssp HHHHHHHHHHHHHTTC--------SCHHHHHHHTHHHHHHHHHHHHHT---SCGGGC--CTHHHH----HHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHHHHHHH---CCCCCC--CHHHHH----HHHHHHHHHHH
T ss_conf 9999999999999707--------999999998778889999998870---881102--599999----99999999988
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 96334565546997189999999996405682468602864899999999999553776645897899999999998204
Q 001571 829 NYVNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLK 908 (1051)
Q Consensus 829 ~~vnfg~~~~y~D~~~~~~~~~~l~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~i~~sl~~gl~ 908 (1051)
.. .+.++.+++.+|++++.|...|+.+||++|..||+||+.+++.|+..+.++|++.|+.+++++.||.|
T Consensus 108 ~i----------~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~k 177 (321)
T 1w9c_A 108 HI----------TAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFK 177 (321)
T ss_dssp GG----------GGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 71----------44679999999998999883561119398999999999999985999975999999999999999807
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHH
Q ss_conf 88847785999999999999988413689999747899998872099918999999999994167775010033558888
Q 001571 909 GLDTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQWSLSRPMLSLI 988 (1051)
Q Consensus 909 ~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~s~~L~~li 988 (1051)
|.+++|+..++.++..+...+.+ + .+.++.+- ..++..++..+|.+++..+|+..+..-..++.-+
T Consensus 178 H~~r~V~e~gL~il~~ll~n~~~----~----~~~~~~Fy------~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~l 243 (321)
T 1w9c_A 178 HTMRNVADTGLQILFTLLQNVAQ----E----EAAAQSFY------QTYFCDILQHIFSVVTDTSHTAGLTMHASILAYM 243 (321)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHH----C----HHHHHHHH------HHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHC----C----HHHHHHHH------HHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHH
T ss_conf 99836889999999999998864----7----18899999------9999999999999984723531489999999999
Q ss_pred H------------C------CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 1------------6------9789999999998-0499136889999999977343104692339888998999999862
Q 001571 989 L------------I------SEQVFSDLKAQIL-TSQPVDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFR 1049 (1051)
Q Consensus 989 ~------------~------~~~~f~~l~~~li-~~q~~~~~~~l~~af~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr 1049 (1051)
. . +..+-.++..+++ ++.|.-.++++..--..|.+ . ..+..+|+..+..|+-.+|
T Consensus 244 f~~ve~~~i~~pl~~~~~~~n~~~v~~~l~~lL~~~Fp~l~~~qi~~fv~glf~-----~-~~d~~~Fk~~lrDFLIqiK 317 (321)
T 1w9c_A 244 FNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFS-----L-NQDIPAFKEHLRDFLVQIK 317 (321)
T ss_dssp HHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH-----T-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-----C-CCCHHHHHHHHHHHHHHHH
T ss_conf 999872761454689998514999999999999873898999999999999997-----1-4889999999999999998
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=139.80 Aligned_cols=777 Identities=13% Similarity=0.134 Sum_probs=378.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH--CCCCHHHH
Q ss_conf 04899999999982599999999999998741049421999999983--089816899999999999862--26897889
Q 001571 2 ESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILD--NALTPYALMLASSSLLKQVTE--HSLALQLR 77 (1051)
Q Consensus 2 ~~i~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~--~S~~~~~~f~a~~~L~~~i~~--~~l~~~~k 77 (1051)
+.++++.++.+..++| +++.|++||+.|.+++++|+++..+..|+. .+.++.++++|+..|++.+.+ ..+++++|
T Consensus 10 ~~~~~l~~~l~~~~s~-d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~ 88 (852)
T 4fdd_A 10 QGLQQILQLLKESQSP-DTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVT 88 (852)
T ss_dssp HHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 2399999999987394-989999999999998709988999999985668898679999999999989874477999999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999841998127899999999999985026898244257999999983137404888999999999730499
Q 001571 78 LDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQP 157 (1051)
Q Consensus 78 ~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~igl~iL~~lv~Ef~~~ 157 (1051)
..+|+.+++.+. +.++.|++++..+++.|.+.+|++.|+ ++++.+.+.+++++......++..|..+.+++...
T Consensus 89 ~~ik~~ll~~l~----~~~~~vr~~~a~~i~~ia~~~~~~~wp--~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~ 162 (852)
T 4fdd_A 89 DFIKSECLNNIG----DSSPLIRATVGILITTIASKGELQNWP--DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162 (852)
T ss_dssp HHHHHHHHTTTT----CSSHHHHHHHHHHHHHHHHHTTTTTCT--THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999874----998999999999999999864813568--99999999870999899999999999999985787
Q ss_pred CCCCCHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99964587576664111010288999999999755454688999999999857145326666877786655555688773
Q 001571 158 NPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAW 237 (1051)
Q Consensus 158 ~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~p~~W 237 (1051)
+....+...+...+..+.+...+....+...+++
T Consensus 163 ---------------~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~------------------------------- 196 (852)
T 4fdd_A 163 ---------------LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVA------------------------------- 196 (852)
T ss_dssp ---------------HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHH-------------------------------
T ss_pred ---------------HCHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHH-------------------------------
T ss_conf ---------------5634313329999999999856797899999999-------------------------------
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 00016960799999998414985449999999987200246789928899999999998999850376789912389999
Q 001571 238 RPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNYHEYC 317 (1051)
Q Consensus 238 ~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~~~~~~~~~ 317 (1051)
||..++... .+....++..++..+...+.. .+++.-...|
T Consensus 197 ------------------------------aL~~~~~~~------~~~~~~~~~~~l~~l~~~~~d----~~~~vr~~a~ 236 (852)
T 4fdd_A 197 ------------------------------CVNQFIISR------TQALMLHIDSFIENLFALAGD----EEPEVRKNVC 236 (852)
T ss_dssp ------------------------------HHHTTTTTT------CHHHHTSHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred ------------------------------HHHHHHHCC------CHHHHHHHHHHHHHHHHHCCC----CCHHHHHHHH
T ss_conf ------------------------------999998646------387998899999999987179----9778999999
Q ss_pred HHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99855442125135540018499999999999986321012567189999999984127576568996435543799999
Q 001571 318 RLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKGDAPSLLDEFVPKITE 397 (1051)
Q Consensus 318 ~~l~rl~~~~~l~~l~~~~~~~~~l~~l~~~T~~~l~~~~~~~~s~~~lL~~W~~lv~~~~~~~~~~~~~l~~~~~~I~~ 397 (1051)
+.+.++...++- .+. ..+..+..+....++. ..++.-...+++|..+...... ...+..+...++.
T Consensus 237 ~~L~~l~~~~~~-~~~------~~l~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~~~~-----~~~~~~~~~~l~p 302 (852)
T 4fdd_A 237 RALVMLLEVRMD-RLL------PHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQPIC-----KDVLVRHLPKLIP 302 (852)
T ss_dssp HHHHHHHHHCHH-HHG------GGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTSTTH-----HHHHTTTHHHHHH
T ss_pred HHHHHHHHHCHH-HHH------HHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHCCHHH-----HHHHHHHHHHHHH
T ss_conf 999999985779-899------8899999999987069--9689999999999998603657-----9887888988999
Q ss_pred HHHHHHCCCCCC-------CCCCCCCC-CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 998600010112-------45888899-9988688799998302322103412389999995999999999985117899
Q 001571 398 GFITSRFNSVQA-------GFPDDLSD-NPLDNVELLQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTGD 469 (1051)
Q Consensus 398 ~yi~~~l~~~~~-------~~~~e~~e-~~~~d~~~~~~~le~i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~~ 469 (1051)
.. ...|...+. ...+|++| +..++......-...++.+++..++...+.+...+.+.++ ..+
T Consensus 303 ~l-l~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~---------~~~ 372 (852)
T 4fdd_A 303 VL-VNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF---------HHE 372 (852)
T ss_dssp HH-HHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHT---------CSS
T ss_pred HH-HHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---------CCC
T ss_conf 99-98757867679986698443222456401116999999999999874618789999999999855---------998
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 51346677779999999999830443467886420010337899999986304666653111244078999999999999
Q 001571 470 KSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQH 549 (1051)
Q Consensus 470 ~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~l~~~~~~~~~~~~~s~~~l~~a~l~fl~~ 549 (1051)
+.. .+.-.|.+ |.+..+.... ....+ ..++..++.+++ + ..+++-.+..|.+++
T Consensus 373 ~~~----R~aa~~al---g~i~~~~~~~-----~~~~l-~~~l~~l~~~l~------d-------~~~~Vr~~a~~~l~~ 426 (852)
T 4fdd_A 373 WVV----KESGILVL---GAIAEGCMQG-----MIPYL-PELIPHLIQCLS------D-------KKALVRSITCWTLSR 426 (852)
T ss_dssp HHH----HHHHHHHH---HHTTTTTHHH-----HGGGH-HHHHHHHHHHTT------C-------SSHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHH---HHHHHCCHHH-----HHHHH-HHHHHHHHHHCC------C-------CCHHHHHHHHHHHHH
T ss_conf 899----99999999---9998635688-----99879-999999998717------9-------988999999999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHH
Q ss_conf 68787156776645888999987099876879999999997201687881679999999999984041002377155369
Q 001571 550 FRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDTI 629 (1051)
Q Consensus 550 ~~~~yl~~~~~~~~k~~~~l~~~~g~~~~~~~~~~~l~ki~~nL~~~~~~~~i~~~~~~Ll~~l~~~~~~~~~l~~~~~~ 629 (1051)
+....- +... . .-...++..+++ .+. ..++.+...++.-+..++.+... .+ .|.+
T Consensus 427 l~~~~~-~~~~--~------------~~~~~ll~~L~~----~L~--d~~~~vr~~a~~aL~~l~~~~~~--~l--~~~l 481 (852)
T 4fdd_A 427 YAHWVV-SQPP--D------------TYLKPLMTELLK----RIL--DSNKRVQEAACSAFATLEEEACT--EL--VPYL 481 (852)
T ss_dssp THHHHH-HSCT--T------------TTHHHHHHHHHH----HHT--CSSHHHHHHHHHHHHHHHHHHGG--GG--GGGH
T ss_pred HHHHHC-CCHH--H------------HHHHHHHHHHHH----HHH--CCCHHHHHHHHHHHHHHHHHHHH--HH--HHHH
T ss_conf 998861-1047--8------------999999999999----985--89888999999999999997367--66--7679
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CC---CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 999983000789975333343236799999999982-36---79389999469899999984069975566179999999
Q 001571 630 KFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIF-ME---ESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALI 705 (1051)
Q Consensus 630 ~~l~~~~~~~~~~~l~~~~~~~~r~~~~~~l~~~~~-~~---~~~~~~~~~l~pl~~~~~~l~~~~~~~~~~~~~~~~i~ 705 (1051)
..++..... .++... .+.....+.+++.+.- .. ...+|+..+|.++...|..+.... ++ +.
T Consensus 482 ~~ll~~L~~----~l~~~~-~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~------~~----~~ 546 (852)
T 4fdd_A 482 AYILDTLVF----AFSKYQ-HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDED------KD----LF 546 (852)
T ss_dssp HHHHHHHHH----HHHHCC-HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTC------TT----HH
T ss_pred HHHHHHHHH----HHHHHC-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC------HH----HH
T ss_conf 999999999----998837-4799999999999999742431367899998899999987333046------99----99
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHH---------HC--CCCCHHHHHHHHHHHHHHCCCCCEECC
Q ss_conf 9999974577620461158989998822004799997430---------05--997137899999999974123511124
Q 001571 706 GLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISH---------WT--DTPEVTTPLLKFMAEFVLNKAQRLTFD 774 (1051)
Q Consensus 706 ~ll~~l~Gi~~a~~~~~~~~~lf~~i~~~~~~~~~~l~~~---------y~--~~~~v~~~iLkl~~~~~~n~~~ri~f~ 774 (1051)
.+++++..++.+... .+....+-+++..+..+...+.. +. .+.++....+..++.++..-+..+
T Consensus 547 ~~~~~l~~i~~~~g~--~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~--- 621 (852)
T 4fdd_A 547 PLLECLSSVATALQS--GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI--- 621 (852)
T ss_dssp HHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGG---
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH---
T ss_conf 999999999999748--679889999999999999999999875338866688761199999999978999874769---
Q ss_pred CCCCCHHHHHHHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 7881135469999--99999999765079981116765565599999999982609963345655469971899999999
Q 001571 775 SSSPNGILLFREV--SKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNYVNFGVFELYGDRALSDALDIAL 852 (1051)
Q Consensus 775 ~~s~~~~~lf~~~--~~ii~~y~~~~~~~~~~~~~~~~~~k~i~~~l~il~~~l~~~~vnfg~~~~y~D~~~~~~~~~~l 852 (1051)
...+ ..++...... +..+ .. +.-+....++.-+...+.+++. +.+..++....
T Consensus 622 ---------~~~~~~~~~~~~l~~~-l~~~-~~----~vr~~a~~~l~~l~~~~~~~~~----------~~l~~~lp~l~ 676 (852)
T 4fdd_A 622 ---------EQLVARSNILTLMYQC-MQDK-MP----EVRQSSFALLGDLTKACFQHVK----------PCIADFMPILG 676 (852)
T ss_dssp ---------HHHHHTCCHHHHHHHH-TTCS-SH----HHHHHHHHHHHHHHHHCGGGTG----------GGHHHHHHHHH
T ss_pred ---------HHHHCCCCHHHHHHHH-HCCC-CH----HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
T ss_conf ---------9883677189999998-3899-84----4999999999999998168889----------87999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHH
Q ss_conf 9640568246860286489999999999955377664589789999999999820488--84778599999999999998
Q 001571 853 KMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGL--DTNISSQCAAAVDNLAAFYF 930 (1051)
Q Consensus 853 ~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~i~~sl~~gl~~~--~~~i~~~~~~~l~~l~~~~~ 930 (1051)
+.+ . ..+|+.++..-..+..++....+.+...-+ .++..+..-+++. ...+...++.++..++..+-
T Consensus 677 ~~l----~---~~~~~v~~~a~~alg~i~~~~~~~~~p~~~----~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~ 745 (852)
T 4fdd_A 677 TNL----N---PEFISVCNNATWAIGEISIQMGIEMQPYIP----MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCP 745 (852)
T ss_dssp HTC----C---TTSHHHHHHHHHHHHHHHHHHGGGGGGGTH----HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHC----C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCH
T ss_conf 876----9---420689999999999999971176787899----99999999857998872077889999999998688
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCCCCHHHCHHHHHHHHHCCHHH----HHHHHHHHHHC
Q ss_conf 84136899997478999988720999189999999999941-67775010033558888169789----99999999804
Q 001571 931 NNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLF-EDCGNQWSLSRPMLSLILISEQV----FSDLKAQILTS 1005 (1051)
Q Consensus 931 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~-~~~~~~~~~s~~L~~li~~~~~~----f~~l~~~li~~ 1005 (1051)
.... |. +.+++...++.+-. +|...--.+-+.|-.+|..+|+. |-.+... +++
T Consensus 746 ~~~~-------~~--------------l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~-~~~ 803 (852)
T 4fdd_A 746 QEVA-------PM--------------LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDA-VAS 803 (852)
T ss_dssp HHHG-------GG--------------HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHH-HHT
T ss_pred HHHC-------CC--------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-HHH
T ss_conf 9767-------55--------------8999999999865366607999999999999986918688889999999-870
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q ss_conf 99136889999999977343
Q 001571 1006 QPVDQHQRLSVCFDKLMADV 1025 (1051)
Q Consensus 1006 q~~~~~~~l~~af~~L~~~i 1025 (1051)
.. ...+.+.+.|.++..+.
T Consensus 804 ~~-~~~~~l~~~~~~~l~~~ 822 (852)
T 4fdd_A 804 WI-NPKDDLRDMFCKILHGF 822 (852)
T ss_dssp CS-SCCHHHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHH
T ss_conf 68-99789999999999999
No 10
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=122.53 Aligned_cols=616 Identities=11% Similarity=0.085 Sum_probs=317.5
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHH--C------C
Q ss_conf 90489999999998259999999999999874104942199999998308-9816899999999999862--2------6
Q 001571 1 MESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNA-LTPYALMLASSSLLKQVTE--H------S 71 (1051)
Q Consensus 1 ~~~i~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S-~~~~~~f~a~~~L~~~i~~--~------~ 71 (1051)
|++++++.++.....+| +++.| ||+.|.+++++|+.|..+..|+.+. .+..++++|+..|++.|++ . .
T Consensus 1 M~d~~~l~~~L~~~~sp-d~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~ 77 (960)
T 1wa5_C 1 MSDLETVAKFLAESVIA-STAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHL 77 (960)
T ss_dssp CCHHHHHHHHHHHTTSG-GGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBS
T ss_pred CCCHHHHHHHHHHHCCC-CHHHH--HHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 97599999999976599-87899--9999998555998899999998657988889999999999999854887656788
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 89788999999999999841998127899999999999985026898244257999999983137404888999999999
Q 001571 72 LALQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLV 151 (1051)
Q Consensus 72 l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~igl~iL~~lv 151 (1051)
+++++|..||+.+++.+... ++.|+++++.+++.|.+.+||+.|| ++++++.+.+++++..+...++.++..++
T Consensus 78 l~~~~k~~ik~~ll~~l~~~----~~~ir~~l~~~ia~ia~~d~p~~Wp--~ll~~L~~~l~s~~~~~~~~aL~~l~~i~ 151 (960)
T 1wa5_C 78 LPANNVELIKKEIVPLMISL----PNNLQVQIGEAISSIADSDFPDRWP--TLLSDLASRLSNDDMVTNKGVLTVAHSIF 151 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHSTTTCT--THHHHHHTTCCSSCTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99899999999999999808----7999999999999999861713015--79999999847898899999999999999
Q ss_pred HHCCCCCCCCCHHHHHHHHHHCCHHCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 7304999996458757666411101028---8999999999755454688999999999857145326666877786655
Q 001571 152 SEMNQPNPGLPSTHHRRVACSFRDQSLF---QIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEF 228 (1051)
Q Consensus 152 ~Ef~~~~~~~~~~~hrk~~~~f~~~~L~---~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~ 228 (1051)
.++...- .+-+.....+..++. ..+ .+|......++....+
T Consensus 152 ~~~~~~~--~~~~~~~~l~~~l~~-~~~~ll~~~~~~~~~l~~~~~~--------------------------------- 195 (960)
T 1wa5_C 152 KRWRPLF--RSDELFLEIKLVLDV-FTAPFLNLLKTVDEQITANENN--------------------------------- 195 (960)
T ss_dssp GGGTTSC--CCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTCCC-----------------------------------
T ss_pred HHHHHHH--CCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCC---------------------------------
T ss_conf 9988761--484778999999999-8999999999999998735798---------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-
Q ss_conf 5556887730001696079999999841498544999999998720024678992889999999999899985037678-
Q 001571 229 GTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGL- 307 (1051)
Q Consensus 229 ~~~~~p~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l- 307 (1051)
+.-....+. ....+++++..+.... . .+.-...+...+..+..++......
T Consensus 196 ---------------~~~~~~~~~--------~~~~~~k~~~~l~~~~---~--~~~~~~~~~~~~~~~~~~l~~~~p~~ 247 (960)
T 1wa5_C 196 ---------------KASLNILFD--------VLLVLIKLYYDFNCQD---I--PEFFEDNIQVGMGIFHKYLSYSNPLL 247 (960)
T ss_dssp ---------------CHHHHHHHH--------HHHHHHHHHHHHHSSC---C--CHHHHHTHHHHHHHHHHHHSCCSCCC
T ss_pred ---------------HHHHHHHHH--------HHHHHHHHHHHHHHCC---C--HHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf ---------------799999999--------9999999999986256---5--59999989999999999976899855
Q ss_pred -CC---C------HHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHH
Q ss_conf -99---1------23899999985544212513554001849999999999998632101--25-671899999999841
Q 001571 308 -AD---H------DNYHEYCRLLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQ--WA-SSSVYYLLGLWSRLV 374 (1051)
Q Consensus 308 -~~---~------~~~~~~~~~l~rl~~~~~l~~l~~~~~~~~~l~~l~~~T~~~l~~~~--~~-~~s~~~lL~~W~~lv 374 (1051)
.+ . ..-...|+.+.++...|+ . .|..++..+..++...+..+. +. ++.....+++|..++
T Consensus 248 ~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~-~------~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~ 320 (960)
T 1wa5_C 248 EDPDETEHASVLIKVKSSIQELVQLYTTRYE-D------VFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVT 320 (960)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHHHCH-H------HHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 5785533132799999999999999999989-9------99999999999999999843777672899999999999996
Q ss_pred CCCCCCCCCCCCHHH--HHHHHHHHHHHHHHCCCCCCCCCCCCCCCC---------CCCH-HHHHHHHHHHHHHHCCCHH
Q ss_conf 275765689964355--437999999986000101124588889999---------8868-8799998302322103412
Q 001571 375 TSVPYLKGDAPSLLD--EFVPKITEGFITSRFNSVQAGFPDDLSDNP---------LDNV-ELLQDQLDCFPYLCRFQYE 442 (1051)
Q Consensus 375 ~~~~~~~~~~~~~l~--~~~~~I~~~yi~~~l~~~~~~~~~e~~e~~---------~~d~-~~~~~~le~i~~l~r~~~~ 442 (1051)
....+. ..+. .+..++....+...|.-.+... +..++++ .+|. .....-...+..+++...+
T Consensus 321 ~~~~~~-----~~~~~~~~l~~li~~~i~~~m~~~~~d~-e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~ 394 (960)
T 1wa5_C 321 RIPKYF-----EIFNNESAMNNITEQIILPNVTLREEDV-ELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV 394 (960)
T ss_dssp TSHHHH-----GGGCSHHHHHHHHHHTHHHHHSCCGGGT-TTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH
T ss_pred CCHHHH-----HHHCCCHHHHHHHHHHHHHHCCCCHHHH-HHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCH
T ss_conf 867689-----9876851899999999687348888789-9884499999986357551237188999999999997013
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCC-CC-CCCCCCCCCHHHHHHHHHHH
Q ss_conf 38999999599999999998511789951346677779999999999830-44346-78-86420010337899999986
Q 001571 443 NSGLYIINTMEPILQSYTERARMQTGDKSEISVIEAKLAWIVHIIAAIVK-IKQCT-GC-SLESQEVLDAELSARVLQLI 519 (1051)
Q Consensus 443 ~t~~~L~~ll~~~~~~~~~~~~~~~~~~~~l~~~~e~L~Wli~i~g~~l~-~~~~~-~~-~~~~~~~~d~~L~~~v~~l~ 519 (1051)
...+.+.+.+.+.++.|.. .+..+| . .-.-.++..|++.. +.... +. .......++..+...|+..+
T Consensus 395 ~v~~~~l~~i~~~l~~~~~---~~~~~w------~-~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l 464 (960)
T 1wa5_C 395 LVTNIFLAHMKGFVDQYMS---DPSKNW------K-FKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL 464 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------CH------H-HHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC---CCCHHH------H-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 2789999999999987366---961217------9-99999999999998741256774123443569999999737874
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 30466665311124407899999999999968787156776645888999987099876879999999997201687881
Q 001571 520 NVTDSGLHSQRYCELSKQRLDRAILTFFQHFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTES 599 (1051)
Q Consensus 520 ~l~~~~~~~~~~~~~s~~~l~~a~l~fl~~~~~~yl~~~~~~~~k~~~~l~~~~g~~~~~~~~~~~l~ki~~nL~~~~~~ 599 (1051)
. +.. ...|++-.+.+|++++|+... + . ..+..++..+...|. ..+
T Consensus 465 ~--~~~--------~~~p~vr~~a~~~lg~~~~~~--~-----~----------------~~l~~~l~~l~~~L~--d~~ 509 (960)
T 1wa5_C 465 T--SNN--------IPHIILRVDAIKYIYTFRNQL--T-----K----------------AQLIELMPILATFLQ--TDE 509 (960)
T ss_dssp H--CSS--------CSCHHHHHHHHHHHHHTGGGS--C-----H----------------HHHHHHHHHHHHHTT--CSC
T ss_pred C--CCC--------CCCCEEHHHHHHHHHHHHHHC--C-----H----------------HHHHHHHHHHHHHHC--CCC
T ss_conf 4--998--------888330398999999988658--9-----9----------------999999999999848--997
Q ss_pred HHHHHHHHHHHHHHHCCCC-------H-HHHHHCCHHHHHHHHHCCCCCCCCCCC----CCCCCHHHHHHHHHHHHH--H
Q ss_conf 6799999999999840410-------0-237715536999998300078997533----334323679999999998--2
Q 001571 600 QEVIDHTLSLFLELASGYM-------T-GKLLLKLDTIKFIVANHTREHFPFLEE----YRCSRSRTTFYYTIGWLI--F 665 (1051)
Q Consensus 600 ~~i~~~~~~Ll~~l~~~~~-------~-~~~l~~~~~~~~l~~~~~~~~~~~l~~----~~~~~~r~~~~~~l~~~~--~ 665 (1051)
..|...+...|..++.... . ++..+ .|.+..+++.... .++. |...+.....+++++.++ +
T Consensus 510 ~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l-~p~l~~ll~~L~~----ll~~~~~~~~~~~~~e~l~~al~~vv~~~ 584 (960)
T 1wa5_C 510 YVVYTYAAITIEKILTIRESNTSPAFIFHKEDI-SNSTEILLKNLIA----LILKHGSSPEKLAENEFLMRSIFRVLQTS 584 (960)
T ss_dssp HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGT-TTTHHHHHHHHHH----HHHTTCCCHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHHHHHHHHHH----HHHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 219999999999998443644466544359875-6469999999999----99714678776432279999999999988
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 36793899994698999999840699755661799999999999974577620461158989998822004799997430
Q 001571 666 MEESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCALIGLMRDLRGIAMATNSRRTYGLLFDWLYPAHMPLLLKGISH 745 (1051)
Q Consensus 666 ~~~~~~~~~~~l~pl~~~~~~l~~~~~~~~~~~~~~~~i~~ll~~l~Gi~~a~~~~~~~~~lf~~i~~~~~~~~~~l~~~ 745 (1051)
.+.-..|+..++.++...+.....++ .+... ...+++++..++++... ..+..+.+.+.|. +..+++.
T Consensus 585 ~~~~~p~~~~l~~~L~~~l~~~~~~~----~~~~~---~~~~~e~l~~l~~~~~~-~~~~~~~~~~~p~----~~~iL~~ 652 (960)
T 1wa5_C 585 EDSIQPLFPQLLAQFIEIVTIMAKNP----SNPRF---THYTFESIGAILNYTQR-QNLPLLVDSMMPT----FLTVFSE 652 (960)
T ss_dssp TTTTGGGHHHHHHHHHHHHHHHTTSC----CCHHH---HHHHHHHHHHHHHTSCG-GGHHHHHHHHHHH----HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC----CCCHH---HHHHHHHHHHHHHCCCC-CHHHHHHHHHHHH----HHHHHHH
T ss_conf 88612479999999999999997398----97278---89999999999963895-3699999999999----9999986
Q ss_pred HCCCCCHHHHHHHHHHHHHHC
Q ss_conf 059971378999999999741
Q 001571 746 WTDTPEVTTPLLKFMAEFVLN 766 (1051)
Q Consensus 746 y~~~~~v~~~iLkl~~~~~~n 766 (1051)
+..++...++.++..++..
T Consensus 653 --~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 653 --DIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp --TCTTTHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHH
T ss_conf --0576699999999999973
Done!