Query 001571
Match_columns 1051
No_of_seqs 173 out of 454
Neff 9.0
Searched_HMMs 13730
Date Tue Mar 26 16:57:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001571.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_868-872//hhsearch_scop/001571hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w9ca_ a.118.1.19 (A:) Export 99.9 4.7E-23 3.4E-27 155.9 22.8 250 754-1050 47-318 (321)
2 d1wa5c_ a.118.1.1 (C:) Exporti 99.9 4.7E-16 3.4E-20 112.7 61.5 148 1-157 1-157 (959)
3 d1qbkb_ a.118.1.1 (B:) Karyoph 99.7 1.1E-17 8.3E-22 122.6 11.6 570 5-720 8-597 (888)
4 d2bpta1 a.118.1.1 (A:1-861) Im 99.6 1.8E-10 1.3E-14 78.2 61.9 236 4-278 3-257 (861)
5 d1qgra_ a.118.1.1 (A:) Importi 99.3 2.9E-08 2.1E-12 64.5 65.3 224 10-276 6-248 (876)
6 d1ibrb_ a.118.1.1 (B:) Importi 98.6 1.6E-05 1.2E-09 47.6 29.1 230 7-279 2-250 (458)
7 d2vglb_ a.118.1.10 (B:) Adapti 21.5 12 0.0009 11.3 16.4 16 537-552 439-454 (579)
8 d2vgla_ a.118.1.10 (A:) Adapti 19.6 13 0.00098 11.0 13.9 20 597-616 372-391 (584)
9 d1u6gc_ a.118.1.2 (C:) Cullin- 14.2 18 0.0013 10.2 53.6 71 16-89 13-93 (1207)
10 d2dw4a1 a.4.1.18 (A:172-273) L 10.0 28 0.0021 9.0 2.6 24 814-837 74-97 (102)
No 1
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.92 E-value=4.7e-23 Score=155.88 Aligned_cols=250 Identities=17% Similarity=0.259 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHCCCCCEECCCCCCCHH---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8999999999741235111247881135---4699999999999976507998111676556559999999998260996
Q 001571 754 TPLLKFMAEFVLNKAQRLTFDSSSPNGI---LLFREVSKLIVAYGSRVLSLPNAADIYAYKYKGMWICFTILARALAGNY 830 (1051)
Q Consensus 754 ~~iLkl~~~~~~n~~~ri~f~~~s~~~~---~lf~~~~~ii~~y~~~~~~~~~~~~~~~~~~k~i~~~l~il~~~l~~~~ 830 (1051)
..+||++..++..- . .++.+ ++-..+..++..|.+. .|..+ +++.+ .++..+.+.+++.+
T Consensus 47 keiLkLi~t~i~~~-~-------d~~~v~~~~i~pl~~~vL~DY~~~---~p~~R--~~eVL----~l~~~ii~kl~~~~ 109 (321)
T d1w9ca_ 47 RETLKLISGWVSRS-N-------DPQMVAENFVPPLLDAVLIDYQRN---VPAAR--EPEVL----STMAIIVNKLGGHI 109 (321)
T ss_dssp HHHHHHHHHHHTTC-S-------CHHHHHHHTHHHHHHHHHHHHHTS---CGGGC--CTHHH----HHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHCC-C-------CHHHHHHHHHHHHHHHHHHHHHHC---CHHHC--CHHHH----HHHHHHHHHHHHHH
T ss_conf 99999999998438-9-------799999987888999999998847---61102--67599----99999999887863
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 33456554699718999999999640568246860286489999999999955377664589789999999999820488
Q 001571 831 VNFGVFELYGDRALSDALDIALKMTLSIPLADILAFRKLTKAYFAFLEVLFSSHITFILNLNTNTFMHIVGSLESGLKGL 910 (1051)
Q Consensus 831 vnfg~~~~y~D~~~~~~~~~~l~l~l~ip~~dl~~yPkl~~~~f~ll~~~~~~~~~~l~~l~~~~f~~i~~sl~~gl~~~ 910 (1051)
.+.++.+++.++++++.|..+|+.+||++|..||+|++.+++.|++.++++|++.|+.+++++.||++|.
T Consensus 110 ----------~~~v~~I~~~VFe~Tl~MI~~df~~yPehR~~ff~LL~~i~~~cf~~ll~lp~~qf~~vidsi~wa~kH~ 179 (321)
T d1w9ca_ 110 ----------TAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHT 179 (321)
T ss_dssp ----------GGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCS
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHCCCHHCHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf ----------5579999999999999998632200809899999999999997889998499999999999999981899
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHH----HCHHHHHH
Q ss_conf 84778599999999999998841368999974789999887209991899999999999416777501----00335588
Q 001571 911 DTNISSQCAAAVDNLAAFYFNNITMGEAPTSPAAINLARHIVECPTLFPEILKTLFEIVLFEDCGNQW----SLSRPMLS 986 (1051)
Q Consensus 911 ~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~----~~s~~L~~ 986 (1051)
+++|+..|++++..+...+.+. .+.++.+.+ +.+..++..+|.+++..+|+..+ .+-+.|+.
T Consensus 180 ~~~V~~~gL~~l~~ll~n~~~~--------~~~~~~F~~------~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 245 (321)
T d1w9ca_ 180 MRNVADTGLQILFTLLQNVAQE--------EAAAQSFYQ------TYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 245 (321)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC--------HHHHHHHHH------HHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHC--------HHHHHHHHH------HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf 6689999999999999987627--------487999999------99999999999998870178779999999999999
Q ss_pred HHHC--------------CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8816--------------9789999999998-04991368899999999773431046923398889989999998623
Q 001571 987 LILI--------------SEQVFSDLKAQIL-TSQPVDQHQRLSVCFDKLMADVARSLDSKNRDKFTQNLTVFRHEFRV 1050 (1051)
Q Consensus 987 li~~--------------~~~~f~~l~~~li-~~q~~~~~~~l~~af~~L~~~i~~~l~~~nr~~F~~nl~~F~~~vr~ 1050 (1051)
++-. ++.+..++..+++ +..|.-.++.+...-..|.+ ...++.+|+.++..|+-.+|.
T Consensus 246 ive~~~i~~~l~~~~~~~n~~~l~e~l~~lL~~~Fp~l~~~qi~~fv~~Lf~------~~~d~~~Fk~~lrDFLI~~ke 318 (321)
T d1w9ca_ 246 LVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFS------LNQDIPAFKEHLRDFLVQIKE 318 (321)
T ss_dssp HHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH------TTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHH
T ss_conf 9980544455553445545999999999999975789999999999999987------448799999999889687650
No 2
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.90 E-value=4.7e-16 Score=112.65 Aligned_cols=148 Identities=8% Similarity=0.032 Sum_probs=124.8
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHH--C------C
Q ss_conf 9048999999999825999999999999987410494219999999830898-16899999999999862--2------6
Q 001571 1 MESLAQLEALCERLYNSQDSVERAHAENTLKCFSVNTDYISQCQFILDNALT-PYALMLASSSLLKQVTE--H------S 71 (1051)
Q Consensus 1 ~~~i~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~-~~~~f~a~~~L~~~i~~--~------~ 71 (1051)
|+|++++-++- ..+.+++.|++||+.|.++.++|+.+..+..|+.+.+. ..++..|+..|++.|.+ . .
T Consensus 1 ~~d~~~l~~ll---~~s~~~~~~k~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~ 77 (959)
T d1wa5c_ 1 MSDLETVAKFL---AESVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHL 77 (959)
T ss_dssp CCHHHHHHHHH---HHTTSGGGHHHHHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBS
T ss_pred CCCHHHHHHHH---HHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 97199999999---878996899999999999770998999999998358999999999999999999985564344579
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 89788999999999999841998127899999999999985026898244257999999983137404888999999999
Q 001571 72 LALQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLV 151 (1051)
Q Consensus 72 l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~igl~iL~~lv 151 (1051)
+|+++|..||+.+++.+.+. ++.++++++.+++.|++.+||+.|| ++++.+.+.+++++......++.++..++
T Consensus 78 i~~e~k~~Ik~~ll~~l~~~----~~~ir~~l~~~i~~I~~~d~p~~Wp--~ll~~l~~~l~s~~~~~~~~~L~~l~~i~ 151 (959)
T d1wa5c_ 78 LPANNVELIKKEIVPLMISL----PNNLQVQIGEAISSIADSDFPDRWP--TLLSDLASRLSNDDMVTNKGVLTVAHSIF 151 (959)
T ss_dssp SCHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHSTTTCT--THHHHHHTTCCSSCTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999998379----6999999999999999876840257--99999999857999999999999999999
Q ss_pred HHCCCC
Q ss_conf 730499
Q 001571 152 SEMNQP 157 (1051)
Q Consensus 152 ~Ef~~~ 157 (1051)
.++...
T Consensus 152 k~~~~~ 157 (959)
T d1wa5c_ 152 KRWRPL 157 (959)
T ss_dssp GGGTTS
T ss_pred HHHHHH
T ss_conf 998765
No 3
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.74 E-value=1.1e-17 Score=122.62 Aligned_cols=570 Identities=15% Similarity=0.149 Sum_probs=262.2
Q ss_pred HHHHHHHHHHHCC--CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH--CCCCHHHHH
Q ss_conf 9999999998259--99999999999987410494219999999830--89816899999999999862--268978899
Q 001571 5 AQLEALCERLYNS--QDSVERAHAENTLKCFSVNTDYISQCQFILDN--ALTPYALMLASSSLLKQVTE--HSLALQLRL 78 (1051)
Q Consensus 5 ~~lE~~~~~l~~~--~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~--S~~~~~~f~a~~~L~~~i~~--~~l~~~~k~ 78 (1051)
+.++++++.+... ++++.|++|++.|.+|.+.|+.+..+..|+.. +.+..++..|+..|++.|.+ ..++++.|.
T Consensus 8 ~~l~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~~ 87 (888)
T d1qbkb_ 8 QGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTD 87 (888)
T ss_dssp TTHHHHHHHHTTCCHHHHHHHHHHTTSTTTSTTSTTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCCH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999999763979999999999999977399899999999974579998999999999999998700239999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999998419981278999999999999850268982442579999999831374048889999999997304999
Q 001571 79 DIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFDDDRFRDLVKESTNFLSQATSDHYAIGLKILNQLVSEMNQPN 158 (1051)
Q Consensus 79 ~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~~~~~~~~i~~i~~~l~~~~~~~~~igl~iL~~lv~Ef~~~~ 158 (1051)
.||+-+++.+.. .++.|++++..+++.|.+.+|++.|| ++++.+.+.+.+++......++..|..++++....
T Consensus 88 ~Ik~~ll~~l~~----~~~~vr~~~~~~i~~i~~~~~~~~Wp--ell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~- 160 (888)
T d1qbkb_ 88 FIKSECLNNIGD----SSPLIRATVGILITTIASKGELQNWP--DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI- 160 (888)
T ss_dssp HHHHHHTTGGGC----CCSSTTTTTTTTTHHHHTTTSSCSST--TTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHH-
T ss_pred HHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 999999999829----98899999999999999871821129--99999999867999899999999999999986887-
Q ss_pred CCCCHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99645875766641110102889999999997554546889999999998571453266668777866555556887730
Q 001571 159 PGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGTVQIPSAWR 238 (1051)
Q Consensus 159 ~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~~~~p~~W~ 238 (1051)
.. + .+.+..+..+....+..+. .+.+ .+...++.++..++... |..+.
T Consensus 161 ----~~--~----~~~~~~~~~ll~~ll~~~~---~~~~-~vr~~al~~l~~~~~~~------------------~~~~~ 208 (888)
T d1qbkb_ 161 ----LD--S----DVLDRPLNIMIPKFLQFFK---HSSP-KIRSHAVACVNQFIISR------------------TQALM 208 (888)
T ss_dssp ----HH--T----C---CCSTTTTHHHHTGGG---SSSS-CSSSTTTHHHHGGGGCC------------------CSTTC
T ss_pred ----HH--H----HHHHHHHHHHHHHHHHHHH---CCCH-HHHHHHHHHHHHHHHHH------------------HHHHH
T ss_conf ----60--7----7888799999999999863---8888-99999999877788740------------------38899
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 00169607999999984149854499999999872002467899288999999999989998503767899123899999
Q 001571 239 PVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSLFTNDAARSKFLAHLMTGTKEILQTGQGLADHDNYHEYCR 318 (1051)
Q Consensus 239 ~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~f~~~~~~~~~l~~~l~~~~~il~~~~~l~~~~~~~~~~~ 318 (1051)
+.+ +.+++.++......++..+..+.+||++++......+.. |+..++. .+-....-.+++.-.+.|+
T Consensus 209 ~~~--~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~------~l~~i~~----~~l~~~~~~~e~v~~~a~e 276 (888)
T d1qbkb_ 209 LHI--DSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP------HMHNIVE----YMLQRTQDQDENVALEACE 276 (888)
T ss_dssp SHH--HHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTT------TTTTTTT----TTTTTTTSSCHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH----HHHHHCCCCCHHHHHHHHH
T ss_conf 999--999998887607930677999999999899876788899------8887899----9998628986899998899
Q ss_pred HHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98554421251355400184999999999999863210125671899999999841275765689964355437999999
Q 001571 319 LLGRFRVNYQLSELVNVEGYSDWIQLVAEFTLKSLQSWQWASSSVYYLLGLWSRLVTSVPYLKGDAPSLLDEFVPKITEG 398 (1051)
Q Consensus 319 ~l~rl~~~~~l~~l~~~~~~~~~l~~l~~~T~~~l~~~~~~~~s~~~lL~~W~~lv~~~~~~~~~~~~~l~~~~~~I~~~ 398 (1051)
++..+........... +. +..+.. ..++......... ..+.... ..+ ....+....+ .+ .
T Consensus 277 f~~~~~e~~~~~~~~~-~~----l~~l~~---~l~~~~~~~~~~~-~~~~~~~--~~~--~~~~~~~~~i---~~----~ 336 (888)
T d1qbkb_ 277 FWLTLAEQPICKDVLV-RH----LPKLIP---VLVNGMKYSDIDI-ILLKGDV--EED--ETIPDSEQDI---RP----R 336 (888)
T ss_dssp HHCCCCSGGGGTTTTT-TS----TTTTTT---TTTTSSCCSSTTH-HHHTTTS--SCC--TTSCCCGGGC---CC----C
T ss_pred HHHHHHHHHHHHHHHH-HH----HHHHHH---HHHHHHHCCHHHH-HHHHHHH--HHH--HHHHHHHHHH---HH----H
T ss_conf 9999997164589999-99----999999---9998742126889-9885546--654--4214257777---88----9
Q ss_pred HHHHHC---CCCCCCCCC------C-CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 986000---101124588------8-899998868879999830232210341238999999599999999998511789
Q 001571 399 FITSRF---NSVQAGFPD------D-LSDNPLDNVELLQDQLDCFPYLCRFQYENSGLYIINTMEPILQSYTERARMQTG 468 (1051)
Q Consensus 399 yi~~~l---~~~~~~~~~------e-~~e~~~~d~~~~~~~le~i~~l~r~~~~~t~~~L~~ll~~~~~~~~~~~~~~~~ 468 (1051)
+...+. ........+ + .+++...+......-...+..+++...+...+.+.+.+.+.+ ...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l---------~s~ 407 (888)
T d1qbkb_ 337 FHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELL---------FHH 407 (888)
T ss_dssp CCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTT---------TSS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------CCC
T ss_conf 99999999874011121023103445443001133699999998766765129999999999988751---------220
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 95134667777999999999983044346788642001033789999998630466665311124407899999999999
Q 001571 469 DKSEISVIEAKLAWIVHIIAAIVKIKQCTGCSLESQEVLDAELSARVLQLINVTDSGLHSQRYCELSKQRLDRAILTFFQ 548 (1051)
Q Consensus 469 ~~~~l~~~~e~L~Wli~i~g~~l~~~~~~~~~~~~~~~~d~~L~~~v~~l~~l~~~~~~~~~~~~~s~~~l~~a~l~fl~ 548 (1051)
+|.. + .-.+...|++..|.... -.+.+ ..++..++..++ + . .|.+-.+..|.++
T Consensus 408 ~~~~------r-eaa~~alg~i~eg~~~~-----~~~~l-~~li~~l~~~l~------d------~-~~~Vr~~a~~~l~ 461 (888)
T d1qbkb_ 408 EWVV------K-ESGILVLGAIAEGCMQG-----MIPYL-PELIPHLIQCLS------D------K-KALVRSITCWTLS 461 (888)
T ss_dssp SHHH------H-HHHHHHHHHHTTTSHHH-----HTTTH-HHHHHHHHHHTT------S------S-CHHHHHHHHHHHH
T ss_pred HHHH------H-HHHHHHHHHHHHHHHHH-----HCCCC-HHHHHHHHHHCC------C------C-CHHHHHHHHHHHH
T ss_conf 5689------9-99999864355557877-----42120-355679998426------9------9-8999999999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHH
Q ss_conf 96878715677664588899998709987687999999999720168788167999999999998404100237715536
Q 001571 549 HFRKSYVGDQAMHSSKLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESQEVIDHTLSLFLELASGYMTGKLLLKLDT 628 (1051)
Q Consensus 549 ~~~~~yl~~~~~~~~k~~~~l~~~~g~~~~~~~~~~~l~ki~~nL~~~~~~~~i~~~~~~Ll~~l~~~~~~~~~l~~~~~ 628 (1051)
++........ .. .+ ...++..+++.+. ..++.|...++..|..+..... .. -.|.
T Consensus 462 ~~~~~~~~~~----~~-------~~----~~~~l~~ll~~l~------d~~~~V~~~a~~al~~l~~~~~--~~--l~p~ 516 (888)
T d1qbkb_ 462 RYAHWVVSQP----PD-------TY----LKPLMTELLKRIL------DSNKRVQEAACSAFATLEEEAC--TE--LVPY 516 (888)
T ss_dssp HTHHHHHSSC----HH-------HH----TTTHHHHHHHHHS------SSCHHHHHHHHHHHHHHHHHHT--TS--SGGG
T ss_pred HHHHHHHHHH----HH-------HH----HHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHH--HH--HHHH
T ss_conf 9999866541----56-------55----4555899998842------8987899989999999998755--31--1357
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC---C-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 99999830007899753333432367999999999823---6-7938999946989999998406997556617999999
Q 001571 629 IKFIVANHTREHFPFLEEYRCSRSRTTFYYTIGWLIFM---E-ESPVKFKSSMDPLLQVFISLESTPDSMFRTDAVKCAL 704 (1051)
Q Consensus 629 ~~~l~~~~~~~~~~~l~~~~~~~~r~~~~~~l~~~~~~---~-~~~~~~~~~l~pl~~~~~~l~~~~~~~~~~~~~~~~i 704 (1051)
+..++...... ++.+. .+.+...+.+++.++.. . ....+...++.++...|..+...+ . .+
T Consensus 517 ~~~il~~l~~~----l~~~~-~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~---------~~ 581 (888)
T d1qbkb_ 517 LAYILDTLVFA----FSKYQ-HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDED-K---------DL 581 (888)
T ss_dssp HHHHHHHHHHH----TTTCC-HHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTC-T---------TH
T ss_pred HHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCH-H---------HH
T ss_conf 99999999999----86003-7799999999999998623101336799999999999997512106-8---------89
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 9999997457762046
Q 001571 705 IGLMRDLRGIAMATNS 720 (1051)
Q Consensus 705 ~~ll~~l~Gi~~a~~~ 720 (1051)
..+++++..++.+...
T Consensus 582 ~~~le~l~~i~~~~~~ 597 (888)
T d1qbkb_ 582 FPLLECLSSVATALQS 597 (888)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999998678
No 4
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.59 E-value=1.8e-10 Score=78.21 Aligned_cols=236 Identities=15% Similarity=0.153 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH-----------
Q ss_conf 899999999982599999999999998741049--4219999999830-89816899999999999862-----------
Q 001571 4 LAQLEALCERLYNSQDSVERAHAENTLKCFSVN--TDYISQCQFILDN-ALTPYALMLASSSLLKQVTE----------- 69 (1051)
Q Consensus 4 i~~lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~--~~~~~~~~~iL~~-S~~~~~~f~a~~~L~~~i~~----------- 69 (1051)
..++.++....+.++|++.|++||+.|.++.++ |+.+..+..++.+ +.+..++..|+..|++.+.+
T Consensus 3 ~~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~ 82 (861)
T d2bpta1 3 TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ 82 (861)
T ss_dssp HHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 89999999998559899999999999999874471689999999997699998999999999999851145022356776
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCCC-HHHHHHH
Q ss_conf ---268978899999999999984199812789999999999998502689-82442579999999831374-0488899
Q 001571 70 ---HSLALQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFD-DDRFRDLVKESTNFLSQATS-DHYAIGL 144 (1051)
Q Consensus 70 ---~~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~-~~~~~~~i~~i~~~l~~~~~-~~~~igl 144 (1051)
+.++++.|..+|+.+++.+. +.++.|++++..+++.|.+.+|++ .|| ++++.+.+.+.+.+. .....++
T Consensus 83 ~~~~~i~~~~~~~ik~~ll~~l~----~~~~~vr~~~a~~i~~i~~~~~p~~~wp--eli~~L~~~~~s~~~~~~~~~al 156 (861)
T d2bpta1 83 RWITQVSPEAKNQIKTNALTALV----SIEPRIANAAAQLIAAIADIELPHGAWP--ELMKIMVDNTGAEQPENVKRASL 156 (861)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHT----CSSHHHHHHHHHHHHHHHHHHGGGTCCH--HHHHHHHHHTSTTSCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHCCCCCHH--HHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 66732999999999999999883----9988999999999999999767767638--89999999856999589999999
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999997304999996458757666411101028899999999975545468899999999985714532666687778
Q 001571 145 KILNQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDES 224 (1051)
Q Consensus 145 ~iL~~lv~Ef~~~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~ 224 (1051)
.++..+.++...... . +. ..+.+++...+..+..... ...+...++.++..++.+..... +.
T Consensus 157 ~~l~~i~e~~~~~~~--~----------~~-~~~~~il~~i~~~~~~~~~--~~~v~~~a~~~l~~~~~~~~~~~---~~ 218 (861)
T d2bpta1 157 LALGYMCESADPQSQ--A----------LV-SSSNNILIAIVQGAQSTET--SKAVRLAALNALADSLIFIKNNM---ER 218 (861)
T ss_dssp HHHHHHHHTSSTTSS--T----------TG-GGHHHHHHHHHHHHSTTCC--CHHHHHHHHHHHHHHGGGCHHHH---TS
T ss_pred HHHHHHHHHHHHHHH--H----------HH-HHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_conf 999999988347788--8----------89-8899999999998733347--89999999999999999876767---76
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 665555568877300016960799999998414985449999999987200246
Q 001571 225 SEEFGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRS 278 (1051)
Q Consensus 225 ~~d~~~~~~p~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~ 278 (1051)
.. ..+..++.++......+++.+..+.+|+..++.....
T Consensus 219 ----------~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 257 (861)
T d2bpta1 219 ----------EG-----ERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT 257 (861)
T ss_dssp ----------HH-----HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred ----------HH-----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------66-----5447777679885699899999999999999887789
No 5
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.28 E-value=2.9e-08 Score=64.52 Aligned_cols=224 Identities=14% Similarity=0.207 Sum_probs=143.7
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHH-------------CCCC
Q ss_conf 999982599999999999998741049--421999999983089-816899999999999862-------------2689
Q 001571 10 LCERLYNSQDSVERAHAENTLKCFSVN--TDYISQCQFILDNAL-TPYALMLASSSLLKQVTE-------------HSLA 73 (1051)
Q Consensus 10 ~~~~l~~~~~~~~r~~Ae~~L~~f~~~--~~~~~~~~~iL~~S~-~~~~~f~a~~~L~~~i~~-------------~~l~ 73 (1051)
+-+... ++|++.|++||+.|.++.++ |+++..+..|+.+.+ ...++..|+..|++.+.+ ..++
T Consensus 6 ~L~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~ 84 (876)
T d1qgra_ 6 ILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAID 84 (876)
T ss_dssp HHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSC
T ss_pred HHHHHH-CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCC
T ss_conf 999885-9298999999999999986071579999999984489999999999999998753056200155530333599
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHH
Q ss_conf 7889999999999998419981278999999999999850268-98244257999999983137--40488899999999
Q 001571 74 LQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWF-DDDRFRDLVKESTNFLSQAT--SDHYAIGLKILNQL 150 (1051)
Q Consensus 74 ~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~-~~~~~~~~i~~i~~~l~~~~--~~~~~igl~iL~~l 150 (1051)
++.|..+|+.+++.+.+. + .++.+++.+++.|.+.+|| +.|| ++++.+.+.+.+.+ ...+..++.++..+
T Consensus 85 ~~~k~~ik~~ll~~l~~~--~---~~~~~~a~~i~~i~~~~~p~~~Wp--eli~~L~~~l~~~~~~~~~~~~~l~~l~~i 157 (876)
T d1qgra_ 85 ANARREVKNYVLHTLGTE--T---YRPSSASQCVAGIACAEIPVNQWP--ELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp HHHHHHHHHHHHHHTTTC--C---SSSCHHHHHHHHHHHHHGGGTCCT--THHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC--C---HHHHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 999999999999986697--0---889999999999999877734638--999999998659999689999999999999
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 97304999996458757666411101028899999999975545468899999999985714532666687778665555
Q 001571 151 VSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEEFGT 230 (1051)
Q Consensus 151 v~Ef~~~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d~~~ 230 (1051)
+.++.+.. +. .....++...+..+.....+ ..+...++..+..++.+..... +..
T Consensus 158 ~~~~~~~~--------------~~-~~~~~il~~i~~~l~~~~~~--~~v~~~a~~~l~~~~~~~~~~~---~~~----- 212 (876)
T d1qgra_ 158 CQDIDPEQ--------------LQ-DKSNEILTAIIQGMRKEEPS--NNVKLAATNALLNSLEFTKANF---DKE----- 212 (876)
T ss_dssp HHHSCHHH--------------HG-GGHHHHHHHHHHHHSTTCSC--HHHHHHHHHHHHHHGGGCHHHH---TSH-----
T ss_pred HHHCCHHH--------------HH-HHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHHHHHHH---HHH-----
T ss_conf 98777887--------------78-88999999999987175745--7999999999987888731012---577-----
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf 5688773000169607999999984149854499999999872002
Q 001571 231 VQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVR 276 (1051)
Q Consensus 231 ~~~p~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~ 276 (1051)
...+.+++.+.......++.....+.+|+..++...
T Consensus 213 ----------~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~ 248 (876)
T d1qgra_ 213 ----------SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (876)
T ss_dssp ----------HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred ----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf ----------899999999999825998899999999999999996
No 6
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.57 E-value=1.6e-05 Score=47.65 Aligned_cols=230 Identities=14% Similarity=0.196 Sum_probs=133.9
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHH-------------C
Q ss_conf 999999982599999999999998741049--4219999999830898-16899999999999862-------------2
Q 001571 7 LEALCERLYNSQDSVERAHAENTLKCFSVN--TDYISQCQFILDNALT-PYALMLASSSLLKQVTE-------------H 70 (1051)
Q Consensus 7 lE~~~~~l~~~~~~~~r~~Ae~~L~~f~~~--~~~~~~~~~iL~~S~~-~~~~f~a~~~L~~~i~~-------------~ 70 (1051)
+.++-+.+.. +|++.|++|++.|.++..+ |+.+..+..++.+.+. ..++..|+..|++.+.+ .
T Consensus 2 l~~il~~~~s-~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~ 80 (458)
T d1ibrb_ 2 LITILEKTVS-PDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 80 (458)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 8989998859-499999999999999875283589999999984489998999999999998863267111167764111
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCC--CHHHHHHHHHH
Q ss_conf 68978899999999999984199812789999999999998502689-8244257999999983137--40488899999
Q 001571 71 SLALQLRLDIRNYLINYLAKRGPELQSFVTASLIQLLCRLTKFGWFD-DDRFRDLVKESTNFLSQAT--SDHYAIGLKIL 147 (1051)
Q Consensus 71 ~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~la~i~K~~W~~-~~~~~~~i~~i~~~l~~~~--~~~~~igl~iL 147 (1051)
.++++.|..+++.+++.+..- . .+++.++.+++.+.+..++. .|+ ++++.+.+.+.+.. ......++..+
T Consensus 81 ~l~~~~~~~i~~~ll~~~~~~-~----~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~l~~l 153 (458)
T d1ibrb_ 81 AIDANARREVKNYVLQTLGTE-T----YRPSSASQCVAGIACAEIPVNQWP--ELIPQLVANVTNPNSTEHMKESTLEAI 153 (458)
T ss_dssp TSCHHHHHHHHHHHHHHTTCC-C----SSSCSHHHHHHHHHHHHGGGTCCT--THHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHHHHHHCCCCCCC--CHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 499999999999998614798-2----899999999999999867801275--105789999882032177888899888
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99997304999996458757666411101028899999999975545468899999999985714532666687778665
Q 001571 148 NQLVSEMNQPNPGLPSTHHRRVACSFRDQSLFQIFQISLTSLGQLKSDVASRLQELALSLCLKCLSFDFVGTSIDESSEE 227 (1051)
Q Consensus 148 ~~lv~Ef~~~~~~~~~~~hrk~~~~f~~~~L~~if~~~~~~L~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~de~~~d 227 (1051)
..+.+...... + ...+..++......+..... ...+...++..+..++....... + .+
T Consensus 154 ~~~~~~~~~~~--------------~-~~~~~~il~~~~~~l~~~~~--~~~v~~~a~~~l~~~~~~~~~~~---~-~~- 211 (458)
T d1ibrb_ 154 GYICQDIDPEQ--------------L-QDKSNEILTAIIQGMRKEEP--SNNVKLAATNALLNSLEFTKANF---D-KE- 211 (458)
T ss_dssp HHHHHHSCGGG--------------T-GGGHHHHHHHHHHHHSTTCC--CHHHHHHHHHHHHHHTTTTHHHH---T-SH-
T ss_pred HHHHHHCCCHH--------------H-HHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHHH---H-HH-
T ss_conf 89876314100--------------0-23388999999998615456--79999999999999988613245---6-67-
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 5555688773000169607999999984149854499999999872002467
Q 001571 228 FGTVQIPSAWRPVLEDPSTLQIFFDYYAITEAPLSKEALECLVRLASVRRSL 279 (1051)
Q Consensus 228 ~~~~~~p~~W~~~l~~~~~l~~lf~~y~~~~~~l~~~~l~cL~~l~sl~~~~ 279 (1051)
...+.+...+.......+++....+.+|+..++......
T Consensus 212 -------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 250 (458)
T d1ibrb_ 212 -------------SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 250 (458)
T ss_dssp -------------HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred -------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------------777776766887725998999999999999999871999
No 7
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.54 E-value=12 Score=11.29 Aligned_cols=16 Identities=6% Similarity=0.165 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8999999999999687
Q 001571 537 QRLDRAILTFFQHFRK 552 (1051)
Q Consensus 537 ~~l~~a~l~fl~~~~~ 552 (1051)
|....+.+|.++.|..
T Consensus 439 ~~~~~~~iwilGEy~~ 454 (579)
T d2vglb_ 439 PDARAAMIWIVGEYAE 454 (579)
T ss_dssp HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 7899999989837654
No 8
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.64 E-value=13 Score=11.04 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=11.9
Q ss_pred CCCHHHHHHHHHHHHHHHCC
Q ss_conf 88167999999999998404
Q 001571 597 TESQEVIDHTLSLFLELASG 616 (1051)
Q Consensus 597 ~~~~~i~~~~~~Ll~~l~~~ 616 (1051)
..+..+...+++++..++..
T Consensus 372 ~~~~~Ir~~aL~lL~~L~n~ 391 (584)
T d2vgla_ 372 ERDVSVRQRAVDLLYAMCDR 391 (584)
T ss_dssp CCCHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHHHHHHHHHCCH
T ss_conf 86149999999999996798
No 9
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.21 E-value=18 Score=10.22 Aligned_cols=71 Identities=20% Similarity=0.026 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCCC------C-C---HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 5999999999999987410494------2-1---9999999830898168999999999998622689788999999999
Q 001571 16 NSQDSVERAHAENTLKCFSVNT------D-Y---ISQCQFILDNALTPYALMLASSSLLKQVTEHSLALQLRLDIRNYLI 85 (1051)
Q Consensus 16 ~~~~~~~r~~Ae~~L~~f~~~~------~-~---~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~~l~~~~k~~lr~~ll 85 (1051)
..+|++-|..|-.-|...-++. + . .+.....| +.+|+.|+-.|..+|...+.+ +++++-..+.+.+.
T Consensus 13 ~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L-~D~~~~Vq~~A~k~l~~l~~~--~~~~~~~~l~~~L~ 89 (1207)
T d1u6gc_ 13 TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLL-EDKNGEVQNLAVKCLGPLVSK--VKEYQVETIVDTLC 89 (1207)
T ss_dssp TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHH
T ss_conf 798872999999999998723014457688999999999996-799879999999999999976--76866999999999
Q ss_pred HHHH
Q ss_conf 9998
Q 001571 86 NYLA 89 (1051)
Q Consensus 86 ~~l~ 89 (1051)
..+.
T Consensus 90 ~~l~ 93 (1207)
T d1u6gc_ 90 TNML 93 (1207)
T ss_dssp HHTT
T ss_pred HHHC
T ss_conf 9856
No 10
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.04 E-value=28 Score=9.04 Aligned_cols=24 Identities=13% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 599999999982609963345655
Q 001571 814 GMWICFTILARALAGNYVNFGVFE 837 (1051)
Q Consensus 814 ~i~~~l~il~~~l~~~~vnfg~~~ 837 (1051)
++.++.++..-+-..+|||||++.
T Consensus 74 d~~li~ri~~FL~~~G~INfGv~~ 97 (102)
T d2dw4a1 74 DTVLVHRVHSYLERHGLINFGIYK 97 (102)
T ss_dssp CHHHHHHHHHHHHHTTSSSCSSCB
T ss_pred CHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 599999999999982954117676
Done!