BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001572
(1051 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/371 (50%), Positives = 264/371 (71%), Gaps = 15/371 (4%)
Query: 41 NSNRHDRDKEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTV-LQSVANKQIDRVF 99
+S + +K N+QV++RCRP + E+K++ ++ C ++EV+V +A+K + +
Sbjct: 7 SSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTY 66
Query: 100 TFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDL 159
TFD VFG +Q +Y + PI++EV+ G+NCT+FAYGQTGTGKT+TMEG R+ +
Sbjct: 67 TFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG-ERSPNEEY 125
Query: 160 PAE----AGVIPRAVRQIFDTLEAQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQ 215
E AG+IPR + QIF+ L ++S+KVS LE+YNE++ DLL + S++ +
Sbjct: 126 TWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSE 180
Query: 216 KKPISLMED--GKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSV 273
+ + + +D K V+++GLEE V++ +++Y ILE+G+AKR TA TL+N SSRSHSV
Sbjct: 181 R--LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSV 238
Query: 274 FSITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRV 333
FS+T+H+KE + EEL+K GKLNLVDLAGSENI RS IN+SLLTLGRV
Sbjct: 239 FSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRV 298
Query: 334 INALVEHSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKN 393
I ALVE + H+PYR+SKLTR+L+DSLGG+T+T IIATISP++ +LEET+STL+YA+RAKN
Sbjct: 299 ITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
Query: 394 IKNKPEANQKM 404
I NKPE NQK+
Sbjct: 359 ILNKPEVNQKL 369
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/370 (50%), Positives = 263/370 (71%), Gaps = 15/370 (4%)
Query: 41 NSNRHDRDKEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTV-LQSVANKQIDRVF 99
+S + +K N+QV++RCRP + E+K++ ++ C ++EV+V +A+K + +
Sbjct: 7 SSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTY 66
Query: 100 TFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDL 159
TFD VFG +Q +Y + PI++EV+ G+NCT+FAYGQTGTGKT+TMEG R+ +
Sbjct: 67 TFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG-ERSPNEEY 125
Query: 160 PAE----AGVIPRAVRQIFDTLEAQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQ 215
E AG+IPR + QIF+ L ++S+KVS LE+YNE++ DLL + S++ +
Sbjct: 126 TWEEVPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSE 180
Query: 216 KKPISLMED--GKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSV 273
+ + + +D K V+++GLEE V++ +++Y ILE+G+AKR TA TL+N SSRSHSV
Sbjct: 181 R--LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSV 238
Query: 274 FSITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRV 333
FS+T+H+KE + EEL+K GKLNLVDLAGSENI RS IN+SLLTLGRV
Sbjct: 239 FSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRV 298
Query: 334 INALVEHSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKN 393
I ALVE + H+PYR+SKLTR+L+DSLGG+T+T IIATISP++ +LEET+STL+YA+RAKN
Sbjct: 299 ITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
Query: 394 IKNKPEANQK 403
I NKPE NQK
Sbjct: 359 ILNKPEVNQK 368
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/370 (50%), Positives = 263/370 (71%), Gaps = 15/370 (4%)
Query: 41 NSNRHDRDKEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTV-LQSVANKQIDRVF 99
+S + +K N+QV++RCRP + E+K++ ++ C ++EV+V +A+K + +
Sbjct: 6 SSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTY 65
Query: 100 TFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDL 159
TFD VFG +Q +Y + PI++EV+ G+NCT+FAYGQTGTGKT+TMEG R+ +
Sbjct: 66 TFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG-ERSPNEEY 124
Query: 160 PAE----AGVIPRAVRQIFDTLEAQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQ 215
E AG+IPR + QIF+ L ++S+KVS LE+YNE++ DLL + S++ +
Sbjct: 125 TWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSE 179
Query: 216 KKPISLMED--GKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSV 273
+ + + +D K V+++GLEE V++ +++Y ILE+G+AKR TA TL+N SSRSHSV
Sbjct: 180 R--LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSV 237
Query: 274 FSITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRV 333
FS+T+H+KE + EEL+K GKLNLVDLAGSENI RS IN+SLLTLGRV
Sbjct: 238 FSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRV 297
Query: 334 INALVEHSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKN 393
I ALVE + H+PYR+SKLTR+L+DSLGG+T+T IIATISP++ +LEET+STL+YA+RAKN
Sbjct: 298 ITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 357
Query: 394 IKNKPEANQK 403
I NKPE NQK
Sbjct: 358 ILNKPEVNQK 367
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/370 (50%), Positives = 263/370 (71%), Gaps = 15/370 (4%)
Query: 41 NSNRHDRDKEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTV-LQSVANKQIDRVF 99
+S + +K N+QV++RCRP + E+K++ ++ C ++EV+V +A+K + +
Sbjct: 7 SSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTY 66
Query: 100 TFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDL 159
TFD VFG +Q +Y + PI++EV+ G+NCT+FAYGQTGTGKT+TMEG R+ +
Sbjct: 67 TFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG-ERSPNEEY 125
Query: 160 PAE----AGVIPRAVRQIFDTLEAQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQ 215
E AG+IPR + QIF+ L ++S+KVS LE+YNE++ DLL + S++ +
Sbjct: 126 TWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSE 180
Query: 216 KKPISLMED--GKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSV 273
+ + + +D K V+++GLEE V++ +++Y ILE+G+AKR TA TL+N SSRSHSV
Sbjct: 181 R--LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSV 238
Query: 274 FSITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRV 333
FS+T+H+KE + EEL+K GKLNLVDLAGSENI RS IN+SLLTLGRV
Sbjct: 239 FSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRV 298
Query: 334 INALVEHSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKN 393
I ALVE + H+PYR+SKLTR+L+DSLGG+T+T IIATISP++ +LEET+STL+YA+RAKN
Sbjct: 299 ITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
Query: 394 IKNKPEANQK 403
I NKPE NQK
Sbjct: 359 ILNKPEVNQK 368
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/370 (50%), Positives = 263/370 (71%), Gaps = 15/370 (4%)
Query: 41 NSNRHDRDKEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTV-LQSVANKQIDRVF 99
+S + +K N+QV++RCRP + E+K++ ++ C ++EV+V +A+K + +
Sbjct: 9 SSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTY 68
Query: 100 TFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDL 159
TFD VFG +Q +Y + PI++EV+ G+NCT+FAYGQTGTGKT+TMEG R+ +
Sbjct: 69 TFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG-ERSPNEEY 127
Query: 160 PAE----AGVIPRAVRQIFDTLEAQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQ 215
E AG+IPR + QIF+ L ++S+KVS LE+YNE++ DLL + S++ +
Sbjct: 128 TWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSE 182
Query: 216 KKPISLMED--GKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSV 273
+ + + +D K V+++GLEE V++ +++Y ILE+G+AKR TA TL+N SSRSHSV
Sbjct: 183 R--LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSV 240
Query: 274 FSITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRV 333
FS+T+H+KE + EEL+K GKLNLVDLAGSENI RS IN+SLLTLGRV
Sbjct: 241 FSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRV 300
Query: 334 INALVEHSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKN 393
I ALVE + H+PYR+SKLTR+L+DSLGG+T+T IIATISP++ +LEET+STL+YA+RAKN
Sbjct: 301 ITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 360
Query: 394 IKNKPEANQK 403
I NKPE NQK
Sbjct: 361 ILNKPEVNQK 370
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/363 (50%), Positives = 260/363 (71%), Gaps = 15/363 (4%)
Query: 48 DKEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTV-LQSVANKQIDRVFTFDKVFG 106
+K N+QV++RCRP + E+K++ ++ C ++EV+V +A+K + +TFD VFG
Sbjct: 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFG 64
Query: 107 PKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAE---- 162
+Q +Y + PI++EV+ G+NCT+FAYGQTGTGKT+TMEG R+ + E
Sbjct: 65 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG-ERSPNEEYTWEEDPL 123
Query: 163 AGVIPRAVRQIFDTLEAQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISLM 222
AG+IPR + QIF+ L ++S+KVS LE+YNE++ DLL + S++ ++ + +
Sbjct: 124 AGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSER--LQMF 176
Query: 223 ED--GKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHI 280
+D K V+++GLEE V++ +++Y ILE+G+AKR TA TL+N SSRSHSVFS+T+H+
Sbjct: 177 DDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHM 236
Query: 281 KEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVEH 340
KE + EEL+K GKLNLVDLAGSENI RS IN+SLLTLGRVI ALVE
Sbjct: 237 KETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER 296
Query: 341 SAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEA 400
+ H+PYR+SKLTR+L+DSLGG+T+T IIATISP++ +LEET+STL+YA+RAKNI NKPE
Sbjct: 297 TPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEV 356
Query: 401 NQK 403
NQK
Sbjct: 357 NQK 359
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/370 (50%), Positives = 262/370 (70%), Gaps = 15/370 (4%)
Query: 41 NSNRHDRDKEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTV-LQSVANKQIDRVF 99
+S + +K N+QV++RCRP + E+K++ ++ C ++EV+V +A+K + +
Sbjct: 7 SSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTY 66
Query: 100 TFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDL 159
TFD VFG +Q +Y + PI++EV+ G+NCT+FAYGQTGTGKT+TMEG R+ +
Sbjct: 67 TFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG-ERSPNEEY 125
Query: 160 PAEA----GVIPRAVRQIFDTLEAQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQ 215
E G+IPR + QIF+ L ++S+KVS LE+YNE++ DLL + S++ +
Sbjct: 126 TWEEDPLDGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSE 180
Query: 216 KKPISLMED--GKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSV 273
+ + + +D K V+++GLEE V++ +++Y ILE+G+AKR TA TL+N SSRSHSV
Sbjct: 181 R--LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSV 238
Query: 274 FSITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRV 333
FS+T+H+KE + EEL+K GKLNLVDLAGSENI RS IN+SLLTLGRV
Sbjct: 239 FSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRV 298
Query: 334 INALVEHSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKN 393
I ALVE + H+PYR+SKLTR+L+DSLGG+T+T IIATISP++ +LEET+STL+YA+RAKN
Sbjct: 299 ITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
Query: 394 IKNKPEANQK 403
I NKPE NQK
Sbjct: 359 ILNKPEVNQK 368
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 358 bits (918), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 184/379 (48%), Positives = 263/379 (69%), Gaps = 24/379 (6%)
Query: 38 SDWNSNRHDRDK-EVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQID 96
S N++R + K N+QV +R RPL+ E+ V+ REV V + + ++
Sbjct: 9 SGGNTSRQPQKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVV-GPREV-VTRHTLDSKLT 66
Query: 97 RVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKG 156
+ FTFD+ FGP+++Q +Y + P++ EVL+G+NCTVFAYGQTGTGKT+TM G N+
Sbjct: 67 KKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVG---NET 123
Query: 157 GDLPA------EAGVIPRAVRQIFDTLEAQNADYSMKVSFLELYNEDITDLLAQEDHSKS 210
+L + + G+IPRA+ +FD L +Y+M++S+LELYNE++ DLL+ +D +K
Sbjct: 124 AELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDLLSTDDTTK- 182
Query: 211 TEDKQKKPISLMEDG--KGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSS 268
I + +D KG V+++GLEE V+S +D+Y +LE+G +R+TA TL+N +SS
Sbjct: 183 --------IRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSS 234
Query: 269 RSHSVFSITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXX-XXXXXXXINKSL 327
RSH+VFSI VHI+E + E+++K GKLNLVDLAGSEN+S++ IN+SL
Sbjct: 235 RSHTVFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSL 294
Query: 328 LTLGRVINALVEHSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDY 387
LTLGRVI ALV+ + H+PYR+SKLTRLL++SLGG+TKT IIATISP +EET+STL+Y
Sbjct: 295 LTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEY 354
Query: 388 AYRAKNIKNKPEANQKMSK 406
A+RAKNI+NKPE NQK++K
Sbjct: 355 AHRAKNIQNKPEVNQKLTK 373
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 358 bits (918), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 180/354 (50%), Positives = 254/354 (71%), Gaps = 15/354 (4%)
Query: 52 NVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTV-LQSVANKQIDRVFTFDKVFGPKAQ 110
N+QV++RCRP + E+K++ ++ C ++EV+V +A+K + +TFD VFG +
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 62
Query: 111 QRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAE----AGVI 166
Q +Y + PI++EV+ G+NCT+FAYGQTGTGKT+TMEG R+ + E AG+I
Sbjct: 63 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG-ERSPNEEYTWEEDPLAGII 121
Query: 167 PRAVRQIFDTLEAQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISLMED-- 224
PR + QIF+ L ++S+KVS LE+YNE++ DLL + S++ ++ + + +D
Sbjct: 122 PRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSER--LQMFDDPR 174
Query: 225 GKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAA 284
K V+++GLEE V++ +++Y ILE+G+AKR TA TL+N SSRSHSVFS+T+H+KE
Sbjct: 175 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 234
Query: 285 VGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVEHSAHI 344
+ EEL+K GKLNLVDLAGSENI RS IN+SLLTLGRVI ALVE + H+
Sbjct: 235 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 294
Query: 345 PYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKP 398
PYR+SKLTR+L+DSLGG+T+T IIATISP++ +LEET+STL+YA+RAKNI NKP
Sbjct: 295 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKP 348
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 355 bits (912), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 182/369 (49%), Positives = 259/369 (70%), Gaps = 15/369 (4%)
Query: 41 NSNRHDRDKEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTV-LQSVANKQIDRVF 99
+S + +K N+QV++R RP + E+K++ ++ ++EV+V +A+K + +
Sbjct: 7 SSAKKKEEKGKNIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTY 66
Query: 100 TFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDL 159
TFD VFG +Q +Y + PI++EV+ G+N T+FAYGQTGTGKT+TMEG R+ +
Sbjct: 67 TFDMVFGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEG-ERSPNEEY 125
Query: 160 PAE----AGVIPRAVRQIFDTLEAQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQ 215
E AG+IPR + QIF+ L ++S+KVS LE+YNE++ DLL + S++ +
Sbjct: 126 CWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSE 180
Query: 216 KKPISLMED--GKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSV 273
+ + + +D K V+++GLEE V++ +++Y ILE+G+AKR TA TL+N SSRSHSV
Sbjct: 181 R--LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSV 238
Query: 274 FSITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRV 333
FS+T+H+KE + EEL+K GKLNLVDLAGSENI RS IN+SLLTLGRV
Sbjct: 239 FSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRV 298
Query: 334 INALVEHSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKN 393
I ALVE + H+PYR+SKLTR+L+DSLGG+T+T IIATISP++ +LEET+STL+YA+RAKN
Sbjct: 299 ITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
Query: 394 IKNKPEANQ 402
I NKPE NQ
Sbjct: 359 ILNKPEVNQ 367
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 275 bits (704), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 154/360 (42%), Positives = 220/360 (61%), Gaps = 17/360 (4%)
Query: 53 VQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVAN-KQIDRVFTFDKVFGPKAQQ 111
V+V++RCRP++ E+ ++ +V+ +V+V ++ + FTFD V+ A+Q
Sbjct: 23 VRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQ 82
Query: 112 RSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVR 171
+YD+ P+V+ VL GFN T+FAYGQTGTGKTYTMEG +R GD P + GVIP +
Sbjct: 83 FELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEG-IR---GD-PEKRGVIPNSFD 137
Query: 172 QIFDTL-EAQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISLMEDGKGCVV 230
IF + +QN Y ++ S+LE+Y E+I DLL+++ Q K + L E V
Sbjct: 138 HIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKD---------QTKRLELKERPDTGVY 188
Query: 231 VRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGDEEL 290
V+ L S +I ++ G+ R T +N+ SSRSH++F IT+ E + E
Sbjct: 189 VKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENH 248
Query: 291 IKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVE-HSAHIPYRDS 349
I+ GKLNLVDLAGSE +++ IN SL LG VI+ALV+ S HIPYRDS
Sbjct: 249 IRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDS 308
Query: 350 KLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQKMSKAVL 409
KLTRLL+DSLGG KT ++A + P+++++EET++TL YA RAKNIKNKP N+ A+L
Sbjct: 309 KLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALL 368
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 266 bits (680), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 150/359 (41%), Positives = 213/359 (59%), Gaps = 28/359 (7%)
Query: 52 NVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTV------LQSVANKQIDRVFTFDKVF 105
N++V++RCRPL+ E + N +I E +V V + K++ R FTFD V+
Sbjct: 5 NIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVY 64
Query: 106 GPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGV 165
+ I+ + P+++ VL+GFN T+FAYGQTG GKT+TM G NK E G
Sbjct: 65 DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGG---NK-----EEPGA 116
Query: 166 IPRAVRQIFDTLEAQNADYSMKV--SFLELYNEDITDLLAQEDHSKSTEDKQKKPISLME 223
IP + + +FD + + +++ + V S+LELYNE+I DL+ K + L E
Sbjct: 117 IPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLI-----------KNNTKLPLKE 165
Query: 224 DGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEA 283
D + V GL V +A ++ ++++G A R A T +N SSRSHS+F + + E
Sbjct: 166 DKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEV 225
Query: 284 AVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVEHSAH 343
+ ++E+I+ GKLNLVDLAGSE S++ IN SL LG VI+ LVE + H
Sbjct: 226 -IENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATH 284
Query: 344 IPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQ 402
IPYRDSKLTRLL+DSLGG +KT + A ISP++ + +ETMSTL YA RAK IKNKP N+
Sbjct: 285 IPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINE 343
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 254 bits (650), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 152/368 (41%), Positives = 216/368 (58%), Gaps = 39/368 (10%)
Query: 52 NVQVLLRCRPLSDDEQKSNVPRVIS------CSEDKREVTVLQSVANKQIDRVFTFDKVF 105
+++V+ R RP + E +S +++ C+ D +E FTFD+VF
Sbjct: 7 SIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEA-----------QGSFTFDRVF 55
Query: 106 GPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGV 165
+Q I+D +I P V+++L+G+N TVFAYGQTG GK+YTM G D P GV
Sbjct: 56 DMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMG----TSIDDPDGRGV 111
Query: 166 IPRAVRQIFDTL--EAQNADYSMKVSFLELYNEDITDLLA-QEDHSKSTEDKQKKPISLM 222
IPR V QIF ++ A N +Y+++VS++E+Y E I DLLA Q D+ E+K +
Sbjct: 112 IPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRG----- 166
Query: 223 EDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKE 282
V V+GL E V S ++Y ++ RG R A T +N+ SSRSHS+F IT+ K
Sbjct: 167 ------VYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKN 220
Query: 283 AAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVEH-S 341
G K G+L LVDLAGSE + ++ INKSL LG VINAL + S
Sbjct: 221 VETGSA---KSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKS 277
Query: 342 AHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEAN 401
+H+PYRDSKLTR+L++SLGG ++T +I SPS+++ ET+STL + RAK+IKNK + N
Sbjct: 278 SHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVN 337
Query: 402 QKMSKAVL 409
++S A L
Sbjct: 338 AELSPAEL 345
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 253 bits (647), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 150/388 (38%), Positives = 217/388 (55%), Gaps = 42/388 (10%)
Query: 53 VQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQS-VANKQIDRVFTFDKVFGPKAQQ 111
++V+ RCRPLS E+ + ++++ +VT+ A ++ + FTFD V+ ++Q
Sbjct: 23 LKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYDASSKQ 82
Query: 112 RSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVR 171
+YD+ + P+++ VL GFN TVFAYGQTGTGKTYTM+G P GVIP A
Sbjct: 83 ADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVE-----PELRGVIPNAFE 137
Query: 172 QIFDTL-EAQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISLMEDGKGCVV 230
IF + +QN Y ++ S+LE+Y E+I DLL++E K + L E+ + V
Sbjct: 138 HIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEP---------GKRLELKENPETGVY 188
Query: 231 VRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGDEEL 290
++ L + +I ++ G+ R T +N+ SSRSH++F ITV E ++
Sbjct: 189 IKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDH 248
Query: 291 IKCGKLNLVDLAGSENISRSXXXXXXXXX------------------------XXXINKS 326
I+ GKLNLVDLAGSE +++ IN S
Sbjct: 249 IRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLS 308
Query: 327 LLTLGRVINALVEH-SAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTL 385
L LG VI AL + S HIPYRDSKLTRLL+DSLGG KT ++AT+ P++HS +E++STL
Sbjct: 309 LSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTL 368
Query: 386 DYAYRAKNIKNKPEANQKMSKAVLLKDL 413
+A RAKNIKNKP N+ K LL++
Sbjct: 369 RFANRAKNIKNKPRVNED-PKDTLLREF 395
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 243 bits (620), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 147/356 (41%), Positives = 213/356 (59%), Gaps = 27/356 (7%)
Query: 53 VQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPKAQQR 112
++V+ R RPL+D E+K+ V+ + E + S+A K V+ FDKVF P A Q
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCI--SIAGK----VYLFDKVFKPNASQE 66
Query: 113 SIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQ 172
+Y++A IV +VL G+N T+FAYGQT +GKT+TMEG + GD + G+IPR V
Sbjct: 67 KVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVI----GD-SVKQGIIPRIVND 121
Query: 173 IFDTLEAQ--NADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISLMEDGKGCVV 230
IF+ + A N ++ +KVS+ E+Y + I DLL D K +S+ ED
Sbjct: 122 IFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLL----------DVSKVNLSVHEDKNRVPY 171
Query: 231 VRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGDEEL 290
V+G E V S D++ ++E G + R A T +N+ SSRSHSVF I V K+ + +++
Sbjct: 172 VKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINV--KQENLENQKK 229
Query: 291 IKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVE-HSAHIPYRDS 349
+ GKL LVDLAGSE +S++ INKSL LG VI+AL + + HIPYRDS
Sbjct: 230 L-SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDS 288
Query: 350 KLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQKMS 405
KLTR+L++SLGG +T I+ SP++ + ET STLD+ RAK +KN N++++
Sbjct: 289 KLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELT 344
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 228 bits (580), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/358 (38%), Positives = 208/358 (58%), Gaps = 29/358 (8%)
Query: 50 EVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPKA 109
E N++V+ R RPL++ E + ++ + E TV+ +A+K + FD+VF
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDKYI---AKFQGEDTVV--IASKP----YAFDRVFQSST 56
Query: 110 QQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRA 169
Q +Y+ IV +VL+G+N T+FAYGQT +GKT+TMEG + + P G+IPR
Sbjct: 57 SQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHD-----PEGMGIIPRI 111
Query: 170 VRQIFDTLEA--QNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISLMEDGKG 227
V+ IF+ + + +N ++ +KVS+ E+Y + I DLL D K +S+ ED
Sbjct: 112 VQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLL----------DVSKTNLSVHEDKNR 161
Query: 228 CVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGD 287
V+G E V S +++ ++ G + R A T +N+ SSRSHS+F I V K+
Sbjct: 162 VPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINV--KQENTQT 219
Query: 288 EELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVEHSAHIPYR 347
E+ + GKL LVDLAGSE +S++ INKSL LG VI+AL E S ++PYR
Sbjct: 220 EQKLS-GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYR 278
Query: 348 DSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQKMS 405
DSK+TR+L+DSLGG +T I+ SPS+++ ET STL + RAK IKN N +++
Sbjct: 279 DSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNVELT 336
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 226 bits (576), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 139/358 (38%), Positives = 207/358 (57%), Gaps = 29/358 (8%)
Query: 50 EVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPKA 109
E N++V+ R RPL++ E V ++ + E TV+ +A+K + FD+VF
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDKYV---AKFQGEDTVM--IASKP----YAFDRVFQSST 56
Query: 110 QQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRA 169
Q +Y+ IV +VL+G+N T+FAYGQT +GK +TMEG + + P G+IPR
Sbjct: 57 SQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHD-----PEGMGIIPRI 111
Query: 170 VRQIFDTLEA--QNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISLMEDGKG 227
V+ IF+ + + +N ++ +KVS+ E+Y + I DLL D K +S+ ED
Sbjct: 112 VQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLL----------DVSKTNLSVHEDKNR 161
Query: 228 CVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGD 287
V+G E V S +++ ++ G + R A T +N+ SSRSHS+F I V K+
Sbjct: 162 VPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINV--KQENTQT 219
Query: 288 EELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVEHSAHIPYR 347
E+ + GKL LVDLAGSE +S++ INKSL LG VI+AL E S ++PYR
Sbjct: 220 EQKLS-GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYR 278
Query: 348 DSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQKMS 405
DSK+TR+L+DSLGG +T I+ SPS+++ ET STL + RAK IKN N +++
Sbjct: 279 DSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNVELT 336
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 223 bits (567), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 136/347 (39%), Positives = 203/347 (58%), Gaps = 29/347 (8%)
Query: 50 EVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPKA 109
E N++V+ R RPL++ E + ++ + E TV+ +A+K + FD+VF
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDKYI---AKFQGEDTVV--IASKP----YAFDRVFQSST 56
Query: 110 QQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRA 169
Q +Y+ IV +VL+G+N T+FAYGQT +GKT+TMEG + + P G+IPR
Sbjct: 57 SQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHD-----PEGMGIIPRI 111
Query: 170 VRQIFDTLEA--QNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISLMEDGKG 227
V+ IF+ + + +N ++ +KVS+ E+Y + I DLL D K +S+ ED
Sbjct: 112 VQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLL----------DVSKTNLSVHEDKNR 161
Query: 228 CVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGD 287
V+G E V S +++ ++ G + R A T +N+ SSRSHS+F I V +E +
Sbjct: 162 VPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK-QENTQTE 220
Query: 288 EELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVEHSAHIPYR 347
++L GKL LVDLAGSE +S++ INKSL LG VI+AL E S ++PYR
Sbjct: 221 QKL--SGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYR 278
Query: 348 DSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNI 394
DSK+TR+L+DSLGG +T I+ SPS+++ ET STL + RAK I
Sbjct: 279 DSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 213 bits (543), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 192/347 (55%), Gaps = 25/347 (7%)
Query: 52 NVQVLLRCRPLS-DDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPKAQ 110
N++V+ R RP++ +D + ++ D + L +K F DKVF P+A
Sbjct: 5 NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHL---LHKGKPVSFELDKVFSPQAS 61
Query: 111 QRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAV 170
Q+ ++ Q + +V +DGFN +FAYGQTG GKTYTMEG N G+ RA+
Sbjct: 62 QQDVF-QEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAEN--------PGINQRAL 112
Query: 171 RQIFDTLE--AQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISLMEDGKGC 228
+ +F ++ A + +Y++ VS E+YNE + DLL +E ++K I L DG G
Sbjct: 113 QLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEP-------QEKLEIRLCPDGSGQ 165
Query: 229 VVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGDE 288
+ V GL E V S +DI + E G R T T LN+ SSRSH++ +TV + + G
Sbjct: 166 LYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTG-- 223
Query: 289 ELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVEHSAHIPYRD 348
L GKLNLVDLAGSE + +S INKSL LG VI AL H+P+R+
Sbjct: 224 -LRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRN 282
Query: 349 SKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIK 395
SKLT LL+DSL G +KT ++ +SP + ET+ +L +A R ++++
Sbjct: 283 SKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 208 bits (530), Expect = 1e-53, Method: Composition-based stats.
Identities = 136/353 (38%), Positives = 195/353 (55%), Gaps = 26/353 (7%)
Query: 49 KEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPK 108
+E V+V LR RPL E + VT+ + DR F F V
Sbjct: 9 EEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGR-------DRHFGFHVVLAED 61
Query: 109 AQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPR 168
A Q ++Y + P++ +GFN TVFAYGQTG+GKTYTM G + L E G++PR
Sbjct: 62 AGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM--GEASVASLLEDEQGIVPR 119
Query: 169 AVRQIFDTLEAQNA-DYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISLMEDGKG 227
A+ + F ++ + D + VS+LE+Y E+ DLL S+ I L ED +G
Sbjct: 120 AMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRD--------IQLREDERG 171
Query: 228 CVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGD 287
VV+ G++E V +++ ++LE G+A R T T LN SSRSH+VF++T+ + A
Sbjct: 172 NVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSR 231
Query: 288 EELIKCGKL-----NLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVE--- 339
G+L + VDLAGSE + ++ IN SLL LG VI+AL +
Sbjct: 232 LPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQR 291
Query: 340 HSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAK 392
+HIPYRDSK+TR+L+DSLGG KT +IA +SPS+ +ET++TL+YA RA+
Sbjct: 292 RGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 208 bits (529), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 130/361 (36%), Positives = 194/361 (53%), Gaps = 33/361 (9%)
Query: 49 KEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQID--RVFTFDKVFG 106
+E V V +R RPL+ E+ + D + Q+D + F FD+VF
Sbjct: 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVI--------YQVDGSKSFNFDRVFH 53
Query: 107 PKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVI 166
+++Y++ PI++ + G+N T+FAYGQT +GKTYTM G GVI
Sbjct: 54 GNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGS--------EDHLGVI 105
Query: 167 PRAVRQIFDTLEA-QNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISLMEDG 225
PRA+ IF ++ + ++ ++VS++E+YNE ITDLL ++ KP+ + ED
Sbjct: 106 PRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCG--------TQKMKPLIIREDV 157
Query: 226 KGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAV 285
V V L EE VY++ + +G R +T +N+RSSRSH++F + + +E
Sbjct: 158 NRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGE 217
Query: 286 GD--EELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVEH--S 341
E +K LNLVDLAGSE +++ IN+SL LG+VI L +
Sbjct: 218 PSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVG 277
Query: 342 AHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEAN 401
I YRDSKLTR+L++SLGG KT II TI+P S +ET++ L +A AK +KN P N
Sbjct: 278 GFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVN 335
Query: 402 Q 402
+
Sbjct: 336 E 336
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 206 bits (524), Expect = 6e-53, Method: Composition-based stats.
Identities = 135/355 (38%), Positives = 195/355 (54%), Gaps = 30/355 (8%)
Query: 49 KEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPK 108
+E V+V LR RPL E + VT+ + DR F F V
Sbjct: 9 EEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGR-------DRHFGFHVVLAED 61
Query: 109 AQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPR 168
A Q ++Y + P++ +GFN TVFAYGQTG+GKTYTM G + L E G++PR
Sbjct: 62 AGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM--GEASVASLLEDEQGIVPR 119
Query: 169 AVRQIFDTLEAQNA-DYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISLMEDGKG 227
A+ + F ++ + D + VS+LE+Y E+ DLL S+ I L ED +G
Sbjct: 120 AMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRD--------IQLREDERG 171
Query: 228 CVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGD 287
VV+ G++E V +++ ++LE G+A R T T LN SSRSH+VF++T +K+
Sbjct: 172 NVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVT--LKQRGRAP 229
Query: 288 EELIK-------CGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVE- 339
L + K + VDLAGSE + ++ IN SLL LG VI+AL +
Sbjct: 230 SRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDP 289
Query: 340 --HSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAK 392
++IPYRDSK+TR+L+DSLGG KT +IA +SPS+ +ET++TL+YA RA+
Sbjct: 290 QRRGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 203 bits (516), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 130/364 (35%), Positives = 194/364 (53%), Gaps = 40/364 (10%)
Query: 52 NVQVLLRCRPLSDDEQKSNVPRVISCSED--------KREVTVL-------QSVANKQ-I 95
+++V++R RP + E+ + +V+ + + EV+ Q+V KQ
Sbjct: 11 HMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNK 70
Query: 96 DRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNK 155
D F FD VF + Q +++ PI+ L+G+NCTV AYG TG GKT+TM G
Sbjct: 71 DLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS---- 126
Query: 156 GGDLPAEAGVIPRAVRQIFDTLE--AQNADYSMKVSFLELYNEDITDLLAQEDHSKSTED 213
E GV+ + ++ ++ + S VS+LE+YNE I DLL
Sbjct: 127 ----ADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSG------- 175
Query: 214 KQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSV 273
P+++ ED + VVV GL S+ +I +L+ G+ R T +N SSRSH+V
Sbjct: 176 ----PLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAV 231
Query: 274 FSITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRV 333
F I + ++ + ++ K++L+DLAGSE S S IN+SLL LG V
Sbjct: 232 FQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNV 291
Query: 334 INALVE---HSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYR 390
INAL + + HIPYR+SKLTRLL+DSLGG +T +IA +SPS+ ++T +TL YA R
Sbjct: 292 INALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANR 351
Query: 391 AKNI 394
AK+I
Sbjct: 352 AKDI 355
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 202 bits (515), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 129/366 (35%), Positives = 197/366 (53%), Gaps = 37/366 (10%)
Query: 52 NVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTV-LQSV----ANKQIDRVFTFDKVFG 106
N++V R RP + E+ R+ E TV LQS+ +K ++F+FD+VF
Sbjct: 60 NIRVFCRIRPPLESEEN----RMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFH 115
Query: 107 PKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVI 166
P + Q I++ + P++ LDG+N +FAYGQTG+GKTYTM+G +P GVI
Sbjct: 116 PLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDG--------VPESVGVI 166
Query: 167 PRAVRQIFDTLEAQ---NADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISLME 223
PR V +FD++ +Y +K +FLE+YNE + DLL+ E ++ I + +
Sbjct: 167 PRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE--------QKDMEIRMAK 218
Query: 224 DGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEA 283
+ K + V + EE V N + ++ R TA T N+RSSRSH+V + + + A
Sbjct: 219 NNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHA 278
Query: 284 AVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVEHSAH 343
+++ I G +NLVDLAGSE S IN+SL L VI AL++ H
Sbjct: 279 ---EKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDH 331
Query: 344 IPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIK-NKPEANQ 402
IPYR+SKLT LL SLGG +KT + +SP +E++ +L +A + K K + N+
Sbjct: 332 IPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 391
Query: 403 KMSKAV 408
++ +V
Sbjct: 392 YLNNSV 397
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 202 bits (515), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 130/370 (35%), Positives = 198/370 (53%), Gaps = 37/370 (10%)
Query: 48 DKEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTV-LQSV----ANKQIDRVFTFD 102
D N++V R RP + E+ R+ E TV LQS+ +K ++F+FD
Sbjct: 64 DLRGNIRVFCRIRPPLESEEN----RMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFD 119
Query: 103 KVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAE 162
+VF P + Q I++ + P++ LDG+N +FAYGQTG+GKTYTM+G +P
Sbjct: 120 QVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDG--------VPES 170
Query: 163 AGVIPRAVRQIFDTLEAQ---NADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPI 219
GVIPR V +FD++ +Y +K +FLE+YNE + DLL+ E ++ I
Sbjct: 171 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE--------QKDMEI 222
Query: 220 SLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVH 279
+ ++ K + V + EE V N + ++ R TA T N+RSSRSH+V + +
Sbjct: 223 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELI 282
Query: 280 IKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVE 339
+ A +++ I G +NLVDLAGSE S IN+SL L VI AL++
Sbjct: 283 GRHA---EKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQ 335
Query: 340 HSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIK-NKP 398
HIPYR+SKLT LL SLGG +KT + +SP +E++ +L +A + K K
Sbjct: 336 KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKA 395
Query: 399 EANQKMSKAV 408
+ N+ ++ +V
Sbjct: 396 KRNRYLNNSV 405
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 202 bits (514), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 130/370 (35%), Positives = 198/370 (53%), Gaps = 37/370 (10%)
Query: 48 DKEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTV-LQSV----ANKQIDRVFTFD 102
D N++V R RP + E+ R+ E TV LQS+ +K ++F+FD
Sbjct: 50 DLRGNIRVFCRIRPPLESEEN----RMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFD 105
Query: 103 KVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAE 162
+VF P + Q I++ + P++ LDG+N +FAYGQTG+GKTYTM+G +P
Sbjct: 106 QVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDG--------VPES 156
Query: 163 AGVIPRAVRQIFDTLEAQ---NADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPI 219
GVIPR V +FD++ +Y +K +FLE+YNE + DLL+ E ++ I
Sbjct: 157 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE--------QKDMEI 208
Query: 220 SLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVH 279
+ ++ K + V + EE V N + ++ R TA T N+RSSRSH+V + +
Sbjct: 209 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELI 268
Query: 280 IKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVE 339
+ A +++ I G +NLVDLAGSE S IN+SL L VI AL++
Sbjct: 269 GRHA---EKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQ 321
Query: 340 HSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIK-NKP 398
HIPYR+SKLT LL SLGG +KT + +SP +E++ +L +A + K K
Sbjct: 322 KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKA 381
Query: 399 EANQKMSKAV 408
+ N+ ++ +V
Sbjct: 382 KRNRYLNNSV 391
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 199 bits (507), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 129/370 (34%), Positives = 197/370 (53%), Gaps = 37/370 (10%)
Query: 48 DKEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTV-LQSV----ANKQIDRVFTFD 102
D N++V R RP + E+ R+ E TV LQS+ +K ++F+FD
Sbjct: 53 DLRGNIRVFCRIRPPLESEEN----RMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFD 108
Query: 103 KVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAE 162
+VF P + Q I++ + P++ LDG+N +FAYGQTG+GKTYTM+G +P
Sbjct: 109 QVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDG--------VPES 159
Query: 163 AGVIPRAVRQIFDTLEAQ---NADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPI 219
GVIPR V +FD++ +Y +K +FLE+YNE + DLL+ E ++ I
Sbjct: 160 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE--------QKDMEI 211
Query: 220 SLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVH 279
+ ++ K + V + EE V N + ++ R TA T N+RSSRSH+V + +
Sbjct: 212 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELI 271
Query: 280 IKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVE 339
+ A +++ I G +NLVDLAGSE S I +SL L VI AL++
Sbjct: 272 GRHA---EKQEISVGSINLVDLAGSE----SPKTSTRMTETKNIKRSLSELTNVILALLQ 324
Query: 340 HSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIK-NKP 398
HIPYR+SKLT LL SLGG +KT + +SP +E++ +L +A + K K
Sbjct: 325 KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKA 384
Query: 399 EANQKMSKAV 408
+ N+ ++ +V
Sbjct: 385 KRNRYLNNSV 394
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 199 bits (506), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 126/356 (35%), Positives = 190/356 (53%), Gaps = 36/356 (10%)
Query: 48 DKEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTV-LQSV----ANKQIDRVFTFD 102
D N++V R RP + E+ R+ E TV LQS+ +K ++F+FD
Sbjct: 53 DLRGNIRVFCRIRPPLESEEN----RMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFD 108
Query: 103 KVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAE 162
+VF P + Q I++ + P++ LDG+N +FAYGQ+G+GKTYTM+G +P
Sbjct: 109 QVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQSGSGKTYTMDG--------VPES 159
Query: 163 AGVIPRAVRQIFDTLEAQ---NADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPI 219
GVIPR V +FD++ +Y +K +FLE+YNE + DLL+ E ++ I
Sbjct: 160 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE--------QKDMEI 211
Query: 220 SLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVH 279
+ ++ K + V + EE V N + ++ R TA T N+RSSRSH+V + +
Sbjct: 212 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELI 271
Query: 280 IKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVE 339
+ A +++ I G +NLVDLAGSE S IN+SL L VI AL++
Sbjct: 272 GRHA---EKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQ 324
Query: 340 HSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIK 395
HIPYR+SKLT LL SLGG +KT + +SP +E++ +L +A + K
Sbjct: 325 KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK 380
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/376 (33%), Positives = 193/376 (51%), Gaps = 35/376 (9%)
Query: 43 NRHDRDKEVNVQVLLRCRPLSDDEQKSNVPRVI----SCSEDKREVTVLQSVANKQIDRV 98
N + + V+V +R RP D ++ P + SCS + + + N Q
Sbjct: 13 NLYFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLE------IANWRNHQETLK 66
Query: 99 FTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGD 158
+ FD +G ++ Q+ IY ++ PI+ +L+G N +V AYG TG GKT+TM G
Sbjct: 67 YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGS------- 119
Query: 159 LPAEAGVIPRAVRQIFDTLEAQNAD-----YSMKVSFLELYNEDITDLLAQEDHSKSTED 213
P + GVIPRA+ + + A+ S+ +S+LE+Y E + DLL D
Sbjct: 120 -PEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLL----------D 168
Query: 214 KQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSV 273
+ + ED +G +++ GL ++ + S D S R T LN+RSSRSH+V
Sbjct: 169 PASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAV 228
Query: 274 FSITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRV 333
+ V +E + + GKL L+DLAGSE+ R+ IN SL LG+V
Sbjct: 229 LLVKVDQRERLAPFRQ--REGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKV 286
Query: 334 INALVEHSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKN 393
++AL + +PYRDSKLTRLL+DSLGG + +IA I+P +T+S L++A R+K
Sbjct: 287 VDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKE 346
Query: 394 IKNKPEANQKMSKAVL 409
+ N+P N+ + L
Sbjct: 347 VINRPFTNESLQPHAL 362
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 200/378 (52%), Gaps = 45/378 (11%)
Query: 48 DKEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVF-------- 99
D + ++V R RPL + E +I+ +E ++SV ++ ++
Sbjct: 2 DMKGKIRVYCRLRPLCEKE-------IIA-----KERNAIRSVDEFTVEHLWKDDKAKQH 49
Query: 100 TFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDL 159
+D+VF A Q +++ +V +DG+N +FAYGQTG+GKT+T+ G N
Sbjct: 50 MYDRVFDGNATQDDVFEDTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSN----- 103
Query: 160 PAEAGVIPRAVRQIFDTL--EAQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKK 217
G+ PRA+ ++F + ++ +S+K +ELY + + DLL KQ K
Sbjct: 104 ---PGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLP---------KQAK 151
Query: 218 PISL--MEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFS 275
+ L +D KG V V + ++ + ++ TI++RGS +R T TL+N++SSRSH + S
Sbjct: 152 RLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVS 211
Query: 276 ITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVIN 335
+ + E+ + I GKL+ VDLAGSE + +S INKSL LG VI+
Sbjct: 212 VII---ESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIS 268
Query: 336 ALVEHSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIK 395
AL + HIPYR+ KLT L+ DSLGG KT + ISP+ +L+ET ++L YA R ++I
Sbjct: 269 ALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIV 328
Query: 396 NKPEANQKMSKAVLLKDL 413
N P N + LK L
Sbjct: 329 NDPSKNVSSKEVARLKKL 346
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 194 bits (492), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 196/368 (53%), Gaps = 25/368 (6%)
Query: 48 DKEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGP 107
D + ++V R RPL++ E ++++ + E TV + + + +D+VF
Sbjct: 10 DMKGKIRVYCRIRPLNEKESSEREKQMLTTVD---EFTVEHPWKDDK-RKQHIYDRVFDM 65
Query: 108 KAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIP 167
+A Q I++ +V +DG+N +FAYGQTG+GKT+T+ G N G+ P
Sbjct: 66 RASQDDIFEDTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESN--------PGLTP 116
Query: 168 RAVRQIFDTL--EAQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISLMEDG 225
RA +++F+ L +++ +S+K +ELY + + DLL + ++ + + +D
Sbjct: 117 RATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLL-------PKSARRLKLEIKKDS 169
Query: 226 KGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAV 285
KG V V + + + ++ ILERGS +R + T +N+ SSRSH + S+ + E+
Sbjct: 170 KGMVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVI---ESID 226
Query: 286 GDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVEHSAHIP 345
+ GKL+ VDLAGSE + +S INKSL LG VI AL + HIP
Sbjct: 227 LQTQSAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIP 286
Query: 346 YRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQKMS 405
YR+ KLT L+ DSLGG KT + +SP+ +L+ET ++L YA R + I N P +
Sbjct: 287 YRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPSKHISSK 346
Query: 406 KAVLLKDL 413
+ V LK L
Sbjct: 347 EMVRLKKL 354
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 193 bits (491), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 134/366 (36%), Positives = 197/366 (53%), Gaps = 46/366 (12%)
Query: 53 VQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDR----VFTFDKVFGP- 107
V+V +R RP++ E + V+ +K + + + +K R VF +D F
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSM 62
Query: 108 -------KAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLP 160
A Q ++ I+ DG+N +FAYGQTG+GK+YTM G D P
Sbjct: 63 DESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGT-----ADQP 117
Query: 161 AEAGVIPRAVRQIFD-TLEAQNADYSMKV--SFLELYNEDITDLLAQEDHSKSTEDKQKK 217
G+IPR +F+ T + +N + S KV S++E+YNE + DLL + ++ + ++
Sbjct: 118 ---GLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHS 174
Query: 218 PISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSIT 277
+ DG L + AV S DI +++ G+ R A T +N+ SSRSH+VF IT
Sbjct: 175 VLGPYVDG--------LSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKIT 226
Query: 278 V-----HIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGR 332
+ +K G+ K GKL+LVDLAGSE +++ INKSL TLG
Sbjct: 227 LTHTLYDVKSGTSGE----KVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGL 282
Query: 333 VINALVEHSA------HIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLD 386
VI+AL + SA +PYRDS LT LL+DSLGG +KT ++AT+SP+A + +ET+STL
Sbjct: 283 VISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLR 342
Query: 387 YAYRAK 392
YA RAK
Sbjct: 343 YADRAK 348
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 187 bits (475), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 126/362 (34%), Positives = 179/362 (49%), Gaps = 39/362 (10%)
Query: 52 NVQVLLRCRPL---------------SDDEQKSNVPRVISCSEDKREVTVLQSVANKQID 96
N++V R RP+ S S+ P +S S L
Sbjct: 23 NIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPR 82
Query: 97 RVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKG 156
F+FD+VF P + Q ++++ I +V LDG+ +FAYGQTG+GKT+TMEGG G
Sbjct: 83 HDFSFDRVFPPGSGQDEVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGG---PG 138
Query: 157 GDLPAEAGVIPRAVRQIFDT---LEAQNADYSMKVSFLELYNEDITDLLAQEDHSKSTED 213
GD P G+IPRA+R +F L Q YS S++E+YNE + DLLA T
Sbjct: 139 GD-PQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLA-----TGTRK 192
Query: 214 KQKKPISLMEDGKGC--VVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSH 271
Q + G G + V V ++ +L R A T N+RSSRSH
Sbjct: 193 GQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSH 252
Query: 272 SVFSITVHIKEAAVGDEELIKCG-KLNLVDLAGSE----NISRSXXXXXXXXXXXXINKS 326
SVF + + + ++ G ++CG L+LVDLAGSE ++ IN S
Sbjct: 253 SVFQLQISGEHSSRG----LQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSS 308
Query: 327 LLTLGRVINALVEHSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLD 386
L TLG VI AL +H+PYR+SKLT LL++SLGG K + ISP ++ E++++L
Sbjct: 309 LSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLR 368
Query: 387 YA 388
+A
Sbjct: 369 FA 370
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/349 (34%), Positives = 181/349 (51%), Gaps = 26/349 (7%)
Query: 53 VQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTV-------LQSVANKQIDRVFTFDKVF 105
V +R +P D + +I +DKR + + V N+Q D F D V
Sbjct: 26 VHAFVRVKPTDDFAHE-----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVL 80
Query: 106 GPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGV 165
A Q +Y+ +V++ LDG+N T+ YGQTG GKTYTM G N G+
Sbjct: 81 -HDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENY-----KHRGI 134
Query: 166 IPRAVRQIFDTLEAQNAD-YSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISLMED 224
+PRA++Q+F +E + +++VS+LE+YNE + DLL+ + + P++++E+
Sbjct: 135 LPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPS----VTPMTIVEN 190
Query: 225 GKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAA 284
+G V ++GL D +++L G R A +NK SSRSH +F+I +
Sbjct: 191 PQG-VFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT 249
Query: 285 VGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALVEHSA-H 343
+ +E+ I K+NLVDLAGSE + +S INKSL L + I AL + H
Sbjct: 250 LSEEKYITS-KINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDH 308
Query: 344 IPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAK 392
IP+R KLT L+DSLGG ++ I A LEET+S+L +A R K
Sbjct: 309 IPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMK 357
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 183 bits (464), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 185/363 (50%), Gaps = 40/363 (11%)
Query: 46 DRDKEVNVQVLLRCRPLSDDEQKSNVPRVIS----C----SEDKREVTVLQSVANKQIDR 97
D +E + V +R RPL+ E VIS C E K +V + + + N+
Sbjct: 46 DPIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQ---- 101
Query: 98 VFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGG 157
F FD F A +Y P+V + +G T FAYGQTG+GKT+TM G + K
Sbjct: 102 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQ 161
Query: 158 DLPAEAGVIPRAVRQIFDTLEAQNA----DYSMKVSFLELYNEDITDLLAQEDHSKSTED 213
+ A G+ A R +F L+ Q + V+F E+YN + DLL
Sbjct: 162 N--ASKGIYAMASRDVF-LLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL----------- 207
Query: 214 KQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSV 273
+K + ++EDGK V V GL+E V SA+D+ +++ GSA R + T N SSRSH+
Sbjct: 208 NKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHAC 267
Query: 274 FSITVHIKEAAVGDEELIKCGKLNLVDLAGSE-NISRSXXXXXXXXXXXXINKSLLTLGR 332
F I + K GK +LVDLAG+E S INKSLL L
Sbjct: 268 FQIILRAKGRMH--------GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKE 319
Query: 333 VINALVEHSAHIPYRDSKLTRLLRDS-LGGKTKTCIIATISPSAHSLEETMSTLDYAYRA 391
I AL ++ AH P+R+SKLT++LRDS +G ++TC+IATISP S E T++TL YA R
Sbjct: 320 CIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRV 379
Query: 392 KNI 394
K +
Sbjct: 380 KEL 382
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 182 bits (462), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 128/380 (33%), Positives = 192/380 (50%), Gaps = 47/380 (12%)
Query: 53 VQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVF----GPK 108
V+V +R RP + E + +I S T++ K+ + F+FD + P+
Sbjct: 22 VKVAVRVRPFNSREMSRDSKCIIQMSGST--TTIVNPKQPKETPKSFSFDYSYWSHTSPE 79
Query: 109 ----AQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAG 164
A Q+ +Y ++ +G+N +FAYGQTG GK+YTM G + G
Sbjct: 80 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKD------QQG 133
Query: 165 VIPRAVRQIFDTLE---AQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISL 221
+IP+ +F + N YS++VS++E+Y E + DLL K K + +
Sbjct: 134 IIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL---------NPKNKGNLRV 184
Query: 222 MEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITV--- 278
E V L + AV S NDI +++ G+ R A T +N+ SSRSH+VF+I
Sbjct: 185 REHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQK 244
Query: 279 -HIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 337
H E + E K K++LVDLAGSE + INKSL TLG+VI+AL
Sbjct: 245 RHDAETNITTE---KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISAL 301
Query: 338 VEHSA------------HIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTL 385
E + IPYRDS LT LLR++LGG ++T ++A +SP+ + +ET+STL
Sbjct: 302 AEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTL 361
Query: 386 DYAYRAKNIKNKPEANQKMS 405
YA RAK I+N N +++
Sbjct: 362 RYADRAKQIRNTVSVNLELT 381
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 182 bits (462), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 128/377 (33%), Positives = 189/377 (50%), Gaps = 47/377 (12%)
Query: 53 VQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVF----GPK 108
V+V +R RP + E + +I S T++ K+ + F+FD + P+
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGST--TTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 109 ----AQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAG 164
A Q+ +Y ++ +G+N +FAYGQTG GK+YTM G + G
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKD------QQG 117
Query: 165 VIPRAVRQIFDTLE---AQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISL 221
+IP+ +F + N YS++VS++E+Y E + DLL K K + +
Sbjct: 118 IIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL---------NPKNKGNLRV 168
Query: 222 MEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITV--- 278
E V L + AV S NDI +++ G+ R A T +N+ SSRSH+VF+I
Sbjct: 169 REHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQK 228
Query: 279 -HIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 337
H E + E K K++LVDLAGSE + INKSL TLG+VI+AL
Sbjct: 229 RHDAETNITTE---KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISAL 285
Query: 338 VEHSA------------HIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTL 385
E + IPYRDS LT LLR++LGG ++T ++A +SP+ + +ET+STL
Sbjct: 286 AEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTL 345
Query: 386 DYAYRAKNIKNKPEANQ 402
YA RAK I+N N
Sbjct: 346 RYADRAKQIRNTVSVNH 362
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 128/376 (34%), Positives = 189/376 (50%), Gaps = 47/376 (12%)
Query: 53 VQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVF----GPK 108
V+V +R RP + E + +I S T++ K+ + F+FD + P+
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGST--TTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 109 ----AQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAG 164
A Q+ +Y ++ +G+N +FAYGQTG GK+YTM G + G
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKD------QQG 117
Query: 165 VIPRAVRQIFDTLE---AQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISL 221
+IP+ +F + N YS++VS++E+Y E + DLL K K + +
Sbjct: 118 IIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL---------NPKNKGNLRV 168
Query: 222 MEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITV--- 278
E V L + AV S NDI +++ G+ R A T +N+ SSRSH+VF+I
Sbjct: 169 REHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQK 228
Query: 279 -HIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 337
H E + E K K++LVDLAGSE + INKSL TLG+VI+AL
Sbjct: 229 RHDAETNITTE---KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISAL 285
Query: 338 VEHSA------------HIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTL 385
E + IPYRDS LT LLR++LGG ++T ++A +SP+ + +ET+STL
Sbjct: 286 AEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTL 345
Query: 386 DYAYRAKNIKNKPEAN 401
YA RAK I+N N
Sbjct: 346 RYADRAKQIRNTVSVN 361
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 128/377 (33%), Positives = 189/377 (50%), Gaps = 47/377 (12%)
Query: 53 VQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVF----GPK 108
V+V +R RP + E + +I S T++ K+ + F+FD + P+
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGST--TTIVNPKQPKETPKSFSFDYSYWSHTSPE 63
Query: 109 ----AQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAG 164
A Q+ +Y ++ +G+N +FAYGQTG GK+YTM G + G
Sbjct: 64 DINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKD------QQG 117
Query: 165 VIPRAVRQIFDTLE---AQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISL 221
+IP+ +F + N YS++VS++E+Y E + DLL K K + +
Sbjct: 118 IIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL---------NPKNKGNLRV 168
Query: 222 MEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITV--- 278
E V L + AV S NDI +++ G+ R A T +N+ SSRSH+VF+I
Sbjct: 169 REHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQK 228
Query: 279 -HIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINAL 337
H E + E K K++LVDLAGSE + INKSL TLG+VI+AL
Sbjct: 229 RHDAETNITTE---KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISAL 285
Query: 338 VEHSA------------HIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTL 385
E + IPYRDS LT LLR++LGG ++T ++A +SP+ + +ET+STL
Sbjct: 286 AEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTL 345
Query: 386 DYAYRAKNIKNKPEANQ 402
YA RAK I+N N
Sbjct: 346 RYADRAKQIRNTVSVNH 362
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 181 bits (458), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 127/362 (35%), Positives = 181/362 (50%), Gaps = 38/362 (10%)
Query: 46 DRDKEVNVQVLLRCRPLSDDEQKSNVPRVISCS--------EDKREVTVLQSVANKQIDR 97
D +E + V +R RPL+ E VIS E K +V + + + N+
Sbjct: 66 DPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQ---- 121
Query: 98 VFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGG 157
F FD F A +Y P+V + +G T FAYGQTG+GKT+TM G + K
Sbjct: 122 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQ 181
Query: 158 DLPAEAGVIPRAVRQIF---DTLEAQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDK 214
+ A G+ A R +F + +N + + V+F E+YN + DLL
Sbjct: 182 N--ASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL-----------N 228
Query: 215 QKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVF 274
+K + ++ED + V V GL+E V A+D+ ++ GSA R + T N SSRSH+ F
Sbjct: 229 KKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACF 288
Query: 275 SITVHIKEAAVGDEELIKCGKLNLVDLAGSE-NISRSXXXXXXXXXXXXINKSLLTLGRV 333
I + K GK +LVDLAG+E S INKSLL L
Sbjct: 289 QILLRTKGRLH--------GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKEC 340
Query: 334 INALVEHSAHIPYRDSKLTRLLRDS-LGGKTKTCIIATISPSAHSLEETMSTLDYAYRAK 392
I AL ++ AH P+R+SKLT++LRDS +G ++TC+IA ISP S E T++TL YA R K
Sbjct: 341 IRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 400
Query: 393 NI 394
+
Sbjct: 401 EL 402
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 129/360 (35%), Positives = 188/360 (52%), Gaps = 36/360 (10%)
Query: 52 NVQVLLRCRP--LSDDEQKSNVPRVISCSEDKREVTVLQSVA-NKQIDRV----FTFDKV 104
N++V R RP L++ + S++ E E QS+ N+ R+ F FD +
Sbjct: 6 NIRVYCRVRPPLLNEPQDMSHI-----LIEKFNEAKGAQSLTINRNEGRILSYNFQFDMI 60
Query: 105 FGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAG 164
F P + I+++ I +V LDG+N +FAYGQTG+GKTYTM L A G
Sbjct: 61 FEPSHTNKEIFEE-IRQLVQSSLDGYNVCIFAYGQTGSGKTYTM----------LNAGDG 109
Query: 165 VIPRAVRQIFD---TLEAQNADYSMKVSFLELYNEDITDLL---AQEDHSKSTEDKQKKP 218
+IP + IF L+ + +Y M+ ++E+YNE I DLL D+ D QK
Sbjct: 110 MIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHD 169
Query: 219 ISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITV 278
I + +G + + + S + + TIL++ S R TA T N+RSSRSHSVF + +
Sbjct: 170 IRHDHEKQGTYIT-NVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHI 228
Query: 279 HIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINALV 338
+ + G+ GKLNLVDLAGSE I+ S INKSL LG VI AL
Sbjct: 229 NGRNLHTGETSQ---GKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALN 285
Query: 339 EHSA---HIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIK 395
A +IP+R+SKLT LL+ SL G +KT + I P + + ET+++L +A + + K
Sbjct: 286 TPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTK 345
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 166/339 (48%), Gaps = 50/339 (14%)
Query: 99 FTFDKVFGPK-------AQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGG 151
FTFDK F A Q +YD ++ +G++ +FAYGQTG+GK+YTM G
Sbjct: 98 FTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMG- 156
Query: 152 MRNKGGDLPAEAGVIPRAVRQIFDTL-----EAQNADYSMKVSFLELYNEDITDLLAQED 206
P + G+IPR +F + E N Y++KVS+ E+YNE + DLLA
Sbjct: 157 -------TPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLA--- 206
Query: 207 HSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKR 266
+K + + E V+ L E V +I + G R A T +N
Sbjct: 207 --PVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDT 264
Query: 267 SSRSHSVFSITV-HIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINK 325
SSRSH+VF+I + I D+ + ++ LVDLAGSE + INK
Sbjct: 265 SSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINK 324
Query: 326 SLLTLGRVINALVEHSAH----------------------IPYRDSKLTRLLRDSLGGKT 363
SL TLGRVI AL + + +PYRDS LT LL+DSLGG +
Sbjct: 325 SLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNS 384
Query: 364 KTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQ 402
KT +IA ISP+ + +ET+STL YA +AK I+ + NQ
Sbjct: 385 KTAMIACISPTDY--DETLSTLRYADQAKRIRTRAVVNQ 421
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/355 (35%), Positives = 178/355 (50%), Gaps = 38/355 (10%)
Query: 53 VQVLLRCRPLSDDEQKSNVPRVISCS--------EDKREVTVLQSVANKQIDRVFTFDKV 104
+ V +R RPL+ E VIS E K +V + + + N+ F FD
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQ----AFCFDFA 56
Query: 105 FGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAG 164
F A +Y P+V + +G T FAYGQTG+GKT+TM G + K + A G
Sbjct: 57 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQN--ASKG 114
Query: 165 VIPRAVRQIF---DTLEAQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISL 221
+ A R +F + +N + + V+F E+YN + DLL +K + +
Sbjct: 115 IYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL-----------NKKAKLRV 163
Query: 222 MEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIK 281
+ED + V V GL+E V A+D+ ++ GSA R + T N SSRSH+ F I + K
Sbjct: 164 LEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK 223
Query: 282 EAAVGDEELIKCGKLNLVDLAGSE-NISRSXXXXXXXXXXXXINKSLLTLGRVINALVEH 340
GK +LVDLAG+E S INKSLL L I AL ++
Sbjct: 224 GRLH--------GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN 275
Query: 341 SAHIPYRDSKLTRLLRDS-LGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNI 394
AH P+R+SKLT++LRDS +G ++TC+IA ISP S E T++TL YA R K +
Sbjct: 276 KAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 176 bits (446), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 158/301 (52%), Gaps = 31/301 (10%)
Query: 99 FTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGD 158
F FD F Q +Y I+P+V+++L+GF CT AYGQTGTGK+Y+M GM G
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM--GMTPPGEI 120
Query: 159 LPAEAGVIPRAVRQIFDTLEAQ---NAD-YSMKVSFLELYNEDITDLLAQEDHSKSTEDK 214
LP G++PRA+ IF+ + A+ N D + SF+E+YNE DLL H +
Sbjct: 121 LPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAAR 180
Query: 215 QKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVF 274
++ C + ++S D++ ILE G+ RR T +N SSRSH++
Sbjct: 181 CQR----------CTCL------PLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAI- 223
Query: 275 SITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVI 334
+T+H+K ++N+VDLAGSE + R+ IN LL++ +V+
Sbjct: 224 -VTIHVKSKT-------HHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVV 275
Query: 335 NALVEHSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNI 394
++ IPYRDS LT +L+ SL ++ +A ISP L ET+STL + AK +
Sbjct: 276 MSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335
Query: 395 K 395
+
Sbjct: 336 R 336
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 124/362 (34%), Positives = 187/362 (51%), Gaps = 42/362 (11%)
Query: 52 NVQVLLRCRP-LSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPKAQ 110
N++V R RP L ++ +V +D + + + N Q+ F FDK+F +
Sbjct: 29 NIRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTINRGNSQV-IPFKFDKIFDQQET 87
Query: 111 QRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAV 170
I+ + + ++ LDG+N +FAYGQTG+GKTYTM L G++P +
Sbjct: 88 NDEIFKE-VGQLIQSSLDGYNVCIFAYGQTGSGKTYTM----------LNPGDGIVPATI 136
Query: 171 RQIF---DTLEAQNADYSMKVSFLELYNEDITDLL-----AQEDHSKSTEDK------QK 216
IF D L A+ Y + F+E+YNE+I DLL +QE++ ++ + K Q+
Sbjct: 137 NHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQE 196
Query: 217 KPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSI 276
+ + + CV+ S + + +L+R + R TA T N+ SSRSHS+F I
Sbjct: 197 LKTTYITNITTCVL---------DSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFII 247
Query: 277 TVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINA 336
+ K G++ G LNLVDLAGSE ++ S INKSL LG VI+A
Sbjct: 248 HLEGKNEGTGEKSQ---GILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHA 304
Query: 337 LVEHSA---HIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKN 393
L HIP+R+SKLT LL+ SL G +KT + ISP+A L ET+++L +A + N
Sbjct: 305 LNSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNN 364
Query: 394 IK 395
K
Sbjct: 365 TK 366
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 174 bits (442), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 156/298 (52%), Gaps = 31/298 (10%)
Query: 99 FTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGD 158
F FD F Q +Y I+P+V+++L+GF CT AYGQTGTGK+Y+M GM G
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM--GMTPPGEI 120
Query: 159 LPAEAGVIPRAVRQIFDTLEAQ---NAD-YSMKVSFLELYNEDITDLLAQEDHSKSTEDK 214
LP G++PRA+ IF+ + A+ N D + SF+E+YNE DLL H +
Sbjct: 121 LPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAAR 180
Query: 215 QKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVF 274
++ C + ++S D++ ILE G+ RR T +N SSRSH++
Sbjct: 181 CQR----------CTCL------PLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAI- 223
Query: 275 SITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVI 334
+T+H+K ++N+VDLAGSE + R+ IN LL++ +V+
Sbjct: 224 -VTIHVKSKT-------HHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVV 275
Query: 335 NALVEHSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAK 392
++ IPYRDS LT +L+ SL ++ +A ISP L ET+STL + AK
Sbjct: 276 MSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 173 bits (438), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 127/355 (35%), Positives = 188/355 (52%), Gaps = 41/355 (11%)
Query: 52 NVQVLLRCRPLSDDEQKSNVPRVISCSE-------DKREVTVLQSVANKQIDRVFTFDKV 104
N++V LR RP + + S+ +I+ +E EVT +Q+ A Q+ F FDK+
Sbjct: 60 NIRVYLRIRPALKNLENSDTS-LINVNEFDDNSGVQSMEVTKIQNTA--QVHE-FKFDKI 115
Query: 105 FGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAG 164
F + ++ + + +V LDG+N +FAYGQTG+GKT+TM L G
Sbjct: 116 FDQQDTNVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTM----------LNPGDG 164
Query: 165 VIPRAVRQIFD---TLEAQNADYSMKVSFLELYNEDITDLLAQEDHSK-STEDKQKKPIS 220
+IP + IF+ L+ + DY + F+E+YNE+I DLL ++++K T K I
Sbjct: 165 IIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 224
Query: 221 LMEDGKGCVVVRG----LEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSI 276
++ K + LE E + + IL++ + R TA T N+ SSRSHS+F I
Sbjct: 225 HDQETKTTTITNVTSVKLESEEM-----VEIILKKANKLRSTASTASNEHSSRSHSIFII 279
Query: 277 TVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGRVINA 336
+ A G G LNLVDLAGSE I+ S INKSL LG VI+A
Sbjct: 280 HLSGSNAKTGAHS---YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHA 336
Query: 337 LVEHSA---HIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYA 388
L + + HIP+R+SKLT LL+ SL G +KT + ISPS+ + ET+++L +A
Sbjct: 337 LGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 391
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/358 (34%), Positives = 177/358 (49%), Gaps = 38/358 (10%)
Query: 50 EVNVQVLLRCRPLSDDEQKS------NVPR--VISCSEDKREVTVLQSVANKQIDRVFTF 101
E + V +R RPL+ E + +P V+ E K++V + + + N+ F F
Sbjct: 88 EHRICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQ----TFRF 143
Query: 102 DKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPA 161
D F A +Y P+V + + T FAYGQTG+GKT+TM G K D
Sbjct: 144 DYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQD--C 201
Query: 162 EAGVIPRAVRQIFDTLEAQNA---DYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKP 218
G+ A R +F L+ N + + +F E+Y+ + DLL +K
Sbjct: 202 SKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLL-----------NRKTK 250
Query: 219 ISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITV 278
+ ++EDGK V V GL+E V D+ +++ G++ R + T N SSRSH+VF I +
Sbjct: 251 LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIIL 310
Query: 279 HIKEAAVGDEELIKCGKLNLVDLAGSE-NISRSXXXXXXXXXXXXINKSLLTLGRVINAL 337
K GK +L+DLAG+E S INKSLL L I AL
Sbjct: 311 RRKGKLH--------GKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRAL 362
Query: 338 VEHSAHIPYRDSKLTRLLRDS-LGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNI 394
+ H P+R SKLT++LRDS +G ++TC+IATISP S E T++TL YA R K +
Sbjct: 363 GRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 170 bits (430), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 173/325 (53%), Gaps = 32/325 (9%)
Query: 79 EDKREVTVLQSVANKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYG 138
E K+E+ + +++ N + F FDK+F + Q + + + ++ LDG N VFAYG
Sbjct: 412 ESKQELVITRNINNNFSNLRFLFDKIF-EREQSNDLVFEELSQLIQCSLDGTNVCVFAYG 470
Query: 139 QTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEA---QNADYSMKVSFLELYN 195
QTG+GKT+TM G+IP ++++IF+ +E + Y+++ F+E+YN
Sbjct: 471 QTGSGKTFTMSHPTN----------GMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYN 520
Query: 196 EDITDLLAQE-DHSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSA 254
E I DLL + D + E K +D G V + + S TIL + +
Sbjct: 521 EAIVDLLNPKIDPNTKYEIKH-------DDIAGKTTVTNVSTIDIKSPEQAITILNQANK 573
Query: 255 KRRTADTLLNKRSSRSHSVFSITVHIKEAAVGDEELIK---CGKLNLVDLAGSENISRSX 311
KR TA T N SSRSHS+F I + G L K G LNL+DLAGSE ++ S
Sbjct: 574 KRSTAATKSNDHSSRSHSIFIIDLQ------GYNSLTKESSYGTLNLIDLAGSERLNNSR 627
Query: 312 XXXXXXXXXXXINKSLLTLGRVINAL-VEHSAHIPYRDSKLTRLLRDSLGGKTKTCIIAT 370
INKSL LG VI++L ++ +H+PYR+SKLT LL+ SLGG +KT +
Sbjct: 628 AEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVN 687
Query: 371 ISPSAHSLEETMSTLDYAYRAKNIK 395
ISP L ET+++L +A + N +
Sbjct: 688 ISPLTKDLNETINSLRFATKVNNTR 712
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 124/359 (34%), Positives = 186/359 (51%), Gaps = 49/359 (13%)
Query: 52 NVQVLLRCRPLSDDEQKSNVPRVISCSE-------DKREVTVLQSVANKQIDRVFTFDKV 104
N++V R RP + + S+ +I+ +E EVT +Q+ A Q+ F FDK+
Sbjct: 15 NIRVYCRIRPALKNLENSDTS-LINVNEFDDNSGVQSMEVTKIQNTA--QVHE-FKFDKI 70
Query: 105 FGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAG 164
F + ++ + + +V LDG+N +FAYGQTG+GKT+TM L G
Sbjct: 71 FDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM----------LNPGDG 119
Query: 165 VIPRAVRQIFDT---LEAQNADYSMKVSFLELYNEDITDLLAQEDHSKS---------TE 212
+IP + IF+ L+ + DY + F+E+YNE+I DLL ++++K
Sbjct: 120 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 179
Query: 213 DKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHS 272
Q+ + + + C LE E + + IL++ + R TA T N+ SSRSHS
Sbjct: 180 HDQETKTTTITNVTSC----KLESEEM-----VEIILKKANKLRSTASTASNEHSSRSHS 230
Query: 273 VFSITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGR 332
+F I + A G G LNLVDLAGSE I+ S INKSL LG
Sbjct: 231 IFIIHLSGSNAKTGAHSY---GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGD 287
Query: 333 VINALVEHSA---HIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYA 388
VI+AL + + HIP+R+SKLT LL+ SL G +KT + ISPS+ + ET+++L +A
Sbjct: 288 VIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 346
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 169 bits (428), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 124/359 (34%), Positives = 186/359 (51%), Gaps = 49/359 (13%)
Query: 52 NVQVLLRCRPLSDDEQKSNVPRVISCSE-------DKREVTVLQSVANKQIDRVFTFDKV 104
N++V R RP + + S+ +I+ +E EVT +Q+ A Q+ F FDK+
Sbjct: 3 NIRVYCRIRPALKNLENSDTS-LINVNEFDDNSGVQSMEVTKIQNTA--QVHE-FKFDKI 58
Query: 105 FGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAG 164
F + ++ + + +V LDG+N +FAYGQTG+GKT+TM L G
Sbjct: 59 FDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM----------LNPGDG 107
Query: 165 VIPRAVRQIFDT---LEAQNADYSMKVSFLELYNEDITDLLAQEDHSKS---------TE 212
+IP + IF+ L+ + DY + F+E+YNE+I DLL ++++K
Sbjct: 108 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 167
Query: 213 DKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHS 272
Q+ + + + C LE E + + IL++ + R TA T N+ SSRSHS
Sbjct: 168 HDQETKTTTITNVTSC----KLESEEM-----VEIILKKANKLRSTASTASNEHSSRSHS 218
Query: 273 VFSITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGR 332
+F I + A G G LNLVDLAGSE I+ S INKSL LG
Sbjct: 219 IFIIHLSGSNAKTGAHSY---GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGD 275
Query: 333 VINALVEHSA---HIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYA 388
VI+AL + + HIP+R+SKLT LL+ SL G +KT + ISPS+ + ET+++L +A
Sbjct: 276 VIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 334
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 123/359 (34%), Positives = 185/359 (51%), Gaps = 49/359 (13%)
Query: 52 NVQVLLRCRPLSDDEQKSNVPRVISCSE-------DKREVTVLQSVANKQIDRVFTFDKV 104
N++V R RP + + S+ +I+ +E EVT +Q+ A Q+ F FDK+
Sbjct: 4 NIRVYCRIRPALKNLENSDTS-LINVNEFDDNSGVQSMEVTKIQNTA--QVHE-FKFDKI 59
Query: 105 FGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAG 164
F + ++ + + +V LDG+N +FAYGQTG+GKT+TM L G
Sbjct: 60 FDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM----------LNPGDG 108
Query: 165 VIPRAVRQIFDT---LEAQNADYSMKVSFLELYNEDITDLLAQEDHSKS---------TE 212
+IP + IF+ L+ + DY + F+E+YNE+I DLL ++++K
Sbjct: 109 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 168
Query: 213 DKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHS 272
Q+ + + + C LE E + + IL++ + R TA T N+ SSRSHS
Sbjct: 169 HDQETKTTTITNVTSC----KLESEEM-----VEIILKKANKLRSTASTASNEHSSRSHS 219
Query: 273 VFSITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGR 332
+F I + A G G LNLVDLAGS I+ S INKSL LG
Sbjct: 220 IFIIHLSGSNAKTGAHSY---GTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGD 276
Query: 333 VINALVEHSA---HIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYA 388
VI+AL + + HIP+R+SKLT LL+ SL G +KT + ISPS+ + ET+++L +A
Sbjct: 277 VIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 123/359 (34%), Positives = 185/359 (51%), Gaps = 49/359 (13%)
Query: 52 NVQVLLRCRPLSDDEQKSNVPRVISCSE-------DKREVTVLQSVANKQIDRVFTFDKV 104
N++V R RP + + S+ +I+ +E EVT +Q+ A Q+ F FDK+
Sbjct: 4 NIRVYCRIRPALKNLENSDTS-LINVNEFDDNSGVQSMEVTKIQNTA--QVHE-FKFDKI 59
Query: 105 FGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAG 164
F + ++ + + +V LDG+N +FAYGQTG+GKT+TM L G
Sbjct: 60 FDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM----------LNPGDG 108
Query: 165 VIPRAVRQIFDT---LEAQNADYSMKVSFLELYNEDITDLLAQEDHSKS---------TE 212
+IP + IF+ L+ + DY + F+E+YNE+I DLL ++++K
Sbjct: 109 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 168
Query: 213 DKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHS 272
Q+ + + + C LE E + + IL++ + R TA T N+ SSRSHS
Sbjct: 169 HDQETKTTTITNVTSC----KLESEEM-----VEIILKKANKLRSTASTASNEHSSRSHS 219
Query: 273 VFSITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGR 332
+F I + A G G LNLVDLAGSE I+ S I KSL LG
Sbjct: 220 IFIIHLSGSNAKTGAHSY---GTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGD 276
Query: 333 VINALVEHSA---HIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYA 388
VI+AL + + HIP+R+SKLT LL+ SL G +KT + ISPS+ + ET+++L +A
Sbjct: 277 VIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 123/359 (34%), Positives = 185/359 (51%), Gaps = 49/359 (13%)
Query: 52 NVQVLLRCRPLSDDEQKSNVPRVISCSE-------DKREVTVLQSVANKQIDRVFTFDKV 104
N++V R RP + + S+ +I+ +E EVT +Q+ A Q+ F FDK+
Sbjct: 4 NIRVYCRIRPALKNLENSDTS-LINVNEFDDNSGVQSMEVTKIQNTA--QVHE-FKFDKI 59
Query: 105 FGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAG 164
F + ++ + + +V LDG+N +FAYGQTG+GKT+TM L G
Sbjct: 60 FDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTM----------LNPGDG 108
Query: 165 VIPRAVRQIFDT---LEAQNADYSMKVSFLELYNEDITDLLAQEDHSKS---------TE 212
+IP + IF+ L+ + DY + F+E+YNE+I DLL ++++K
Sbjct: 109 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 168
Query: 213 DKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHS 272
Q+ + + + C LE E + + IL++ + R TA T N+ SS SHS
Sbjct: 169 HDQETKTTTITNVTSC----KLESEEM-----VEIILKKANKLRSTASTASNEHSSASHS 219
Query: 273 VFSITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXXXXXINKSLLTLGR 332
+F I + A G G LNLVDLAGSE I+ S INKSL LG
Sbjct: 220 IFIIHLSGSNAKTGAHSY---GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGD 276
Query: 333 VINALVEHSA---HIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYA 388
VI+AL + + HIP+R+SKLT LL+ SL G +KT + ISPS+ + ET+++L +A
Sbjct: 277 VIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/366 (31%), Positives = 188/366 (51%), Gaps = 41/366 (11%)
Query: 53 VQVLLRCRPLSDDEQKSNVPRVIS----CS----EDKREVTVLQSVANKQIDRVFTFDKV 104
++V++R RPLS+ E+K +I+ C+ E + +V + + + + F DKV
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHE----FIVDKV 57
Query: 105 FGPKAQQRSIYDQAIVPIVNEVL-DGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEA 163
F ++Y+ I P++ ++ +G C+ FAYGQTG+GKTYTM G D P
Sbjct: 58 FDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTP--- 114
Query: 164 GVIPRAVRQIFDTLEAQNADYS--MKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISL 221
G+ A IF L + D + + +SF E+Y + DLL +++K ++
Sbjct: 115 GIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLL-----------QKRKMVAA 163
Query: 222 MEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIK 281
+E+GK VVV+ L+ V + ++ + G R+ N SSRSH++ +I +K
Sbjct: 164 LENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNI--DLK 221
Query: 282 EAAVGDEELIKCGKLNLVDLAGSENISRSXXXXXXXXX-XXXINKSLLTLGRVINALVEH 340
+ + GK+ +DLAGSE + + IN+SLL L I A+
Sbjct: 222 DI----NKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSD 277
Query: 341 SAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKN-----IK 395
HIP+RDS+LT++LRD GK+K+ +IA ISP+ E+T++TL Y+ R KN ++
Sbjct: 278 KNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLE 337
Query: 396 NKPEAN 401
KP N
Sbjct: 338 GKPIPN 343
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 142/263 (53%), Gaps = 34/263 (12%)
Query: 50 EVNVQVLLRCRPLSDDE---QKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFG 106
E +++V+ R RPL++ E +P+ K E TV+ + + FD+V
Sbjct: 5 ECSIKVMCRFRPLNEAEILRGDKFIPKF------KGEETVVIGQG-----KPYVFDRVLP 53
Query: 107 PKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVI 166
P Q +Y+ IV +VL+G+N T+FAYGQT +GKT+TMEG + + P G+I
Sbjct: 54 PNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHD-----PQLMGII 108
Query: 167 PRAVRQIFDTLEA--QNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISLMED 224
PR IFD + + +N ++ +KVS+ E+Y + I DLL D K +++ ED
Sbjct: 109 PRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLL----------DVSKTNLAVHED 158
Query: 225 GKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAA 284
V+G E V S ++ +++ G A R A T +N+ SSRSHS+F I IK+
Sbjct: 159 KNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLIN--IKQEN 216
Query: 285 VGDEELIKCGKLNLVDLAGSENI 307
V E+ + GKL LVDLAGSE +
Sbjct: 217 VETEKKLS-GKLYLVDLAGSEKV 238
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 324 NKSLLTLGRVINALVEHS-AHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETM 382
NKSL LG VI+AL E + H+PYRDSK+TR+L+DSLGG +T I+ SPS + ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 383 STLDYAYRAKNIKNKPEANQKMS 405
STL + RAK IKN N +++
Sbjct: 61 STLMFGQRAKTIKNTVSVNLELT 83
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 323 INKSLLTLGRVINALVEHS-AHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEET 381
INKSL LG VI+AL E + H+PYRDSK+TR+L+DSL G +T I+ SPS + ET
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAET 63
Query: 382 MSTLDYAYRAKNIKNKPEANQKMS 405
STL + RAK IKN N +++
Sbjct: 64 KSTLMFGQRAKTIKNTVSVNLELT 87
>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Halodurans
pdb|3LKE|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Halodurans
pdb|3LKE|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Halodurans
Length = 263
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 474 LYLTEQEQKLDLESELKECKINLENRSKALLD-LQEKHMIALSTLKKKEFIISKLLCSEK 532
L+ +E+ +L L E+ E K L+ R K L + E ++ A++ KK L K
Sbjct: 171 LFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGYVPAIAATKK--------LLKGK 222
Query: 533 SIIEQAKELRNELQNASEDITSLFSKLDQKDRMEA 567
+ A+EL+ +L+ +E++ +LF + + K R+EA
Sbjct: 223 A----AEELKQQLEQETEELVALFKQTEIKKRLEA 253
>pdb|3QI3|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With Inhibitor
Bay73-6691
pdb|3QI3|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With Inhibitor
Bay73-6691
pdb|3QI4|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
pdb|3QI4|B Chain B, Crystal Structure Of Pde9a(Q453e) In Complex With Ibmx
Length = 533
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 936 ESKMEIDSITTICLDQLKFVQEKHGENLSTIRNQAEKCFTKDYMVDQHTSTTPKKRAITV 995
E ++E++ + + +++ K +K E L+ R+ C K +D H TP++ T
Sbjct: 125 EKRVELEGLKVVEIEKCKSDIKKMREELAA-RSSRTNCPCKYSFLDNHKKLTPRRDVPTY 183
Query: 996 P----SLASIEEMRTPAFE 1010
P S +IE +R P F+
Sbjct: 184 PKYLLSPETIEALRKPTFD 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,139,888
Number of Sequences: 62578
Number of extensions: 918708
Number of successful extensions: 2587
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2267
Number of HSP's gapped (non-prelim): 106
length of query: 1051
length of database: 14,973,337
effective HSP length: 109
effective length of query: 942
effective length of database: 8,152,335
effective search space: 7679499570
effective search space used: 7679499570
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)