Query 001572
Match_columns 1051
No_of_seqs 452 out of 2300
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:08:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 1E-175 3E-180 1569.7 96.5 1037 2-1051 1-1040(1041)
2 KOG4280 Kinesin-like protein [ 100.0 2.1E-91 4.5E-96 813.7 26.7 365 49-430 3-371 (574)
3 KOG0245 Kinesin-like protein [ 100.0 3.2E-90 6.8E-95 815.3 29.7 402 49-476 2-422 (1221)
4 KOG0240 Kinesin (SMY1 subfamil 100.0 1.6E-84 3.5E-89 737.0 46.2 350 49-420 5-357 (607)
5 PLN03188 kinesin-12 family pro 100.0 1.6E-84 3.6E-89 787.7 39.4 366 49-436 96-481 (1320)
6 KOG0242 Kinesin-like protein [ 100.0 1.1E-80 2.4E-85 748.9 32.6 361 49-431 4-368 (675)
7 cd01364 KISc_BimC_Eg5 Kinesin 100.0 3E-79 6.5E-84 695.7 36.6 347 50-403 1-352 (352)
8 cd01370 KISc_KIP3_like Kinesin 100.0 1.6E-79 3.5E-84 694.2 33.6 323 52-394 1-338 (338)
9 cd01373 KISc_KLP2_like Kinesin 100.0 3E-79 6.5E-84 691.8 34.7 326 52-394 2-337 (337)
10 KOG0241 Kinesin-like protein [ 100.0 1.1E-78 2.5E-83 702.9 32.9 360 50-426 3-382 (1714)
11 cd01368 KISc_KIF23_like Kinesi 100.0 1.6E-77 3.4E-82 679.6 35.1 324 52-392 2-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.9E-76 4.1E-81 673.7 35.9 334 51-401 1-356 (356)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 6.5E-76 1.4E-80 663.8 36.0 330 51-394 1-333 (333)
14 cd01367 KISc_KIF2_like Kinesin 100.0 2.5E-75 5.5E-80 656.1 33.8 316 51-392 1-322 (322)
15 cd01376 KISc_KID_like Kinesin 100.0 1.8E-74 3.8E-79 648.5 34.3 315 52-392 1-319 (319)
16 cd01372 KISc_KIF4 Kinesin moto 100.0 8.3E-74 1.8E-78 648.4 35.0 329 51-395 1-341 (341)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.8E-73 4E-78 641.8 35.1 321 51-394 2-325 (325)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 1.7E-73 3.6E-78 641.1 33.2 318 52-394 1-321 (321)
19 cd01375 KISc_KIF9_like Kinesin 100.0 1.9E-72 4.2E-77 635.7 35.4 325 52-392 1-334 (334)
20 KOG0244 Kinesin-like protein [ 100.0 2.6E-69 5.5E-74 642.1 53.6 347 59-428 1-350 (913)
21 cd01366 KISc_C_terminal Kinesi 100.0 4.1E-71 9E-76 623.5 35.4 324 51-397 2-329 (329)
22 smart00129 KISc Kinesin motor, 100.0 1.6E-70 3.4E-75 620.0 35.7 330 52-401 1-335 (335)
23 KOG0239 Kinesin (KAR3 subfamil 100.0 4.4E-71 9.4E-76 663.5 23.4 335 49-403 312-649 (670)
24 cd00106 KISc Kinesin motor dom 100.0 3.4E-68 7.4E-73 598.9 35.0 322 52-392 1-328 (328)
25 PF00225 Kinesin: Kinesin moto 100.0 3.4E-69 7.4E-74 608.7 26.8 325 58-394 1-335 (335)
26 KOG0247 Kinesin-like protein [ 100.0 3.2E-67 6.9E-72 608.0 33.0 340 49-404 29-446 (809)
27 KOG0246 Kinesin-like protein [ 100.0 2.6E-66 5.6E-71 586.1 29.7 334 46-399 203-546 (676)
28 COG5059 KIP1 Kinesin-like prot 100.0 7.1E-63 1.5E-67 589.4 35.0 348 50-437 21-372 (568)
29 cd01363 Motor_domain Myosin an 100.0 2.8E-49 6.1E-54 412.2 18.9 179 114-373 8-186 (186)
30 KOG0243 Kinesin-like protein [ 99.0 0.00039 8.5E-09 87.6 57.8 114 893-1006 823-944 (1041)
31 KOG0161 Myosin class II heavy 98.7 0.008 1.7E-07 81.2 73.3 163 806-978 1241-1403(1930)
32 KOG0161 Myosin class II heavy 98.4 0.029 6.3E-07 76.0 73.9 150 785-939 1315-1470(1930)
33 KOG4674 Uncharacterized conser 98.4 0.036 7.8E-07 74.1 68.6 225 510-739 733-964 (1822)
34 TIGR00606 rad50 rad50. This fa 97.9 0.26 5.7E-06 66.5 71.6 31 681-711 499-529 (1311)
35 TIGR02168 SMC_prok_B chromosom 97.9 0.23 5E-06 65.5 46.9 15 412-426 674-688 (1179)
36 KOG0977 Nuclear envelope prote 97.9 0.098 2.1E-06 63.2 37.4 55 656-710 315-369 (546)
37 COG5059 KIP1 Kinesin-like prot 97.8 1.4E-07 3.1E-12 114.6 -12.0 249 50-338 304-566 (568)
38 KOG0977 Nuclear envelope prote 97.8 0.066 1.4E-06 64.6 35.0 99 465-563 91-189 (546)
39 KOG0994 Extracellular matrix g 97.8 0.31 6.6E-06 62.2 54.2 64 672-736 1545-1608(1758)
40 COG1196 Smc Chromosome segrega 97.6 0.76 1.7E-05 61.5 47.4 26 749-775 1004-1029(1163)
41 PF07888 CALCOCO1: Calcium bin 97.5 0.47 1E-05 57.6 48.6 90 446-535 165-254 (546)
42 KOG0971 Microtubule-associated 97.5 0.59 1.3E-05 58.5 45.7 106 488-597 326-439 (1243)
43 KOG0995 Centromere-associated 97.5 0.46 1E-05 57.3 44.0 12 734-745 554-565 (581)
44 PF09726 Macoilin: Transmembra 97.4 0.07 1.5E-06 66.9 29.1 23 407-429 417-439 (697)
45 PRK02224 chromosome segregatio 97.4 0.9 2E-05 58.9 60.7 13 136-148 28-40 (880)
46 TIGR02168 SMC_prok_B chromosom 97.3 1.3 2.8E-05 58.5 52.2 16 730-745 969-984 (1179)
47 KOG0976 Rho/Rac1-interacting s 97.3 0.88 1.9E-05 56.3 59.4 110 451-560 91-204 (1265)
48 PF13931 Microtub_bind: Kinesi 97.3 0.00011 2.5E-09 73.7 2.0 39 980-1023 4-42 (143)
49 PF12128 DUF3584: Protein of u 97.3 1.6 3.5E-05 58.7 60.6 83 100-189 57-142 (1201)
50 COG1196 Smc Chromosome segrega 97.2 1.7 3.6E-05 58.4 51.1 100 449-548 671-770 (1163)
51 KOG0994 Extracellular matrix g 97.2 1.3 2.8E-05 57.0 51.0 51 857-908 1644-1694(1758)
52 PF07888 CALCOCO1: Calcium bin 97.2 0.95 2.1E-05 55.1 46.1 65 450-514 155-219 (546)
53 PF10174 Cast: RIM-binding pro 97.1 1.5 3.2E-05 55.9 59.6 157 406-562 236-404 (775)
54 PF00038 Filament: Intermediat 97.1 0.76 1.6E-05 52.2 41.4 102 410-514 20-130 (312)
55 KOG0995 Centromere-associated 97.1 1.2 2.5E-05 54.0 47.7 80 477-560 284-363 (581)
56 TIGR02169 SMC_prok_A chromosom 97.0 2.3 5.1E-05 56.4 51.2 18 451-468 680-697 (1164)
57 TIGR02169 SMC_prok_A chromosom 96.9 2.9 6.2E-05 55.5 51.4 40 770-809 1000-1039(1164)
58 KOG1029 Endocytic adaptor prot 96.9 0.79 1.7E-05 56.7 29.2 23 537-559 480-502 (1118)
59 KOG0976 Rho/Rac1-interacting s 96.9 2.1 4.6E-05 53.2 52.4 36 725-760 322-360 (1265)
60 KOG0933 Structural maintenance 96.8 2.7 6E-05 53.7 39.6 39 691-732 1009-1047(1174)
61 PRK03918 chromosome segregatio 96.8 3 6.4E-05 54.1 70.4 17 129-148 24-40 (880)
62 TIGR00606 rad50 rad50. This fa 96.7 4.9 0.00011 54.7 69.3 22 408-429 471-492 (1311)
63 PRK11637 AmiB activator; Provi 96.6 1.7 3.6E-05 51.9 29.9 13 412-424 44-56 (428)
64 KOG4674 Uncharacterized conser 96.6 5.3 0.00011 54.6 67.9 41 839-879 1092-1132(1822)
65 PRK11637 AmiB activator; Provi 96.5 2.7 5.9E-05 50.1 31.5 17 409-425 48-64 (428)
66 PRK04863 mukB cell division pr 96.5 6.2 0.00013 54.0 51.6 33 944-976 876-909 (1486)
67 COG5185 HEC1 Protein involved 96.4 3 6.5E-05 49.3 36.4 102 411-525 267-368 (622)
68 KOG0612 Rho-associated, coiled 96.4 5.8 0.00012 51.9 46.9 23 406-428 463-485 (1317)
69 PF05667 DUF812: Protein of un 96.3 4.5 9.7E-05 50.3 36.0 23 723-745 551-573 (594)
70 PRK02224 chromosome segregatio 96.3 6 0.00013 51.4 68.0 10 978-987 815-824 (880)
71 KOG1029 Endocytic adaptor prot 96.2 5.1 0.00011 50.0 37.6 29 964-993 733-761 (1118)
72 PF09726 Macoilin: Transmembra 96.0 6.9 0.00015 49.7 31.6 32 679-710 625-656 (697)
73 PF00261 Tropomyosin: Tropomyo 96.0 3.3 7.1E-05 45.6 27.7 26 443-468 34-59 (237)
74 PF12128 DUF3584: Protein of u 96.0 11 0.00023 51.1 68.8 15 134-148 20-34 (1201)
75 PRK04863 mukB cell division pr 95.8 13 0.00028 51.1 54.7 17 133-149 29-45 (1486)
76 PF00038 Filament: Intermediat 95.8 4.6 0.0001 45.8 39.4 15 444-458 24-38 (312)
77 KOG0980 Actin-binding protein 95.7 9.7 0.00021 48.4 51.7 48 768-815 793-842 (980)
78 PF00261 Tropomyosin: Tropomyo 95.4 5.5 0.00012 43.9 28.9 10 623-632 174-183 (237)
79 KOG0971 Microtubule-associated 95.1 14 0.0003 47.1 42.3 19 989-1007 886-904 (1243)
80 COG4942 Membrane-bound metallo 95.1 10 0.00022 45.1 31.1 24 487-510 80-103 (420)
81 TIGR03017 EpsF chain length de 95.0 4.4 9.4E-05 48.3 23.7 79 360-438 128-208 (444)
82 PRK04778 septation ring format 94.7 15 0.00033 45.6 58.3 28 867-895 455-482 (569)
83 PF14662 CCDC155: Coiled-coil 94.5 5.8 0.00013 42.3 20.2 13 413-425 41-53 (193)
84 TIGR03007 pepcterm_ChnLen poly 94.5 13 0.00029 45.0 26.7 78 360-437 118-197 (498)
85 COG5185 HEC1 Protein involved 94.4 15 0.00032 43.9 36.7 27 450-476 328-354 (622)
86 KOG4673 Transcription factor T 94.3 19 0.00041 44.7 54.3 56 695-751 709-764 (961)
87 PHA02562 46 endonuclease subun 93.9 21 0.00045 43.9 35.5 16 133-148 29-44 (562)
88 KOG0946 ER-Golgi vesicle-tethe 93.8 26 0.00056 44.5 35.2 26 533-558 748-773 (970)
89 KOG4643 Uncharacterized coiled 93.7 29 0.00064 45.0 50.2 121 618-745 481-605 (1195)
90 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.7 8.5 0.00019 38.6 19.6 69 452-520 24-92 (132)
91 PF15070 GOLGA2L5: Putative go 93.6 26 0.00056 44.0 40.6 36 524-559 155-190 (617)
92 PF15254 CCDC14: Coiled-coil d 93.6 20 0.00042 45.3 24.8 99 468-572 429-527 (861)
93 PF14915 CCDC144C: CCDC144C pr 93.5 16 0.00035 41.4 39.4 125 621-746 147-280 (305)
94 PF06705 SF-assemblin: SF-asse 93.4 15 0.00033 40.6 36.3 56 621-676 160-215 (247)
95 KOG0933 Structural maintenance 93.4 33 0.00073 44.5 43.4 69 913-986 1099-1167(1174)
96 COG0556 UvrB Helicase subunit 93.1 0.12 2.6E-06 61.8 5.3 93 97-199 3-101 (663)
97 KOG4673 Transcription factor T 93.0 30 0.00066 43.1 52.2 79 804-882 712-793 (961)
98 PRK09039 hypothetical protein; 92.9 23 0.0005 41.3 23.8 16 369-387 13-28 (343)
99 COG3883 Uncharacterized protei 92.8 20 0.00043 40.3 25.6 25 551-575 128-152 (265)
100 PF00308 Bac_DnaA: Bacterial d 92.8 0.047 1E-06 59.1 1.3 51 97-150 3-53 (219)
101 PF09787 Golgin_A5: Golgin sub 92.6 32 0.00069 42.3 31.0 20 410-429 118-137 (511)
102 PRK04778 septation ring format 92.5 35 0.00076 42.5 50.1 45 452-496 112-156 (569)
103 PF06705 SF-assemblin: SF-asse 92.4 21 0.00046 39.5 33.9 67 725-791 149-222 (247)
104 PF05667 DUF812: Protein of un 92.3 38 0.00082 42.5 36.5 11 344-354 239-249 (594)
105 PF15619 Lebercilin: Ciliary p 92.1 19 0.00042 38.7 25.4 19 410-428 14-32 (194)
106 TIGR03185 DNA_S_dndD DNA sulfu 92.1 42 0.00092 42.4 39.2 17 133-149 30-46 (650)
107 KOG0996 Structural maintenance 92.0 54 0.0012 43.4 62.8 73 806-879 868-947 (1293)
108 PRK06893 DNA replication initi 92.0 0.095 2.1E-06 57.1 2.5 49 96-150 10-58 (229)
109 TIGR01005 eps_transp_fam exopo 91.9 26 0.00056 45.0 24.5 76 361-436 152-229 (754)
110 PF13949 ALIX_LYPXL_bnd: ALIX 91.8 26 0.00056 39.4 33.3 41 575-616 194-234 (296)
111 PF05701 WEMBL: Weak chloropla 91.7 41 0.00089 41.5 54.9 49 460-508 35-83 (522)
112 KOG4809 Rab6 GTPase-interactin 91.6 39 0.00085 41.2 32.1 73 444-516 337-409 (654)
113 PF06160 EzrA: Septation ring 91.6 44 0.00095 41.6 61.1 40 866-906 450-489 (560)
114 KOG0612 Rho-associated, coiled 91.5 61 0.0013 43.1 48.5 16 136-151 224-239 (1317)
115 COG1579 Zn-ribbon protein, pos 91.2 28 0.00061 38.6 24.1 28 533-560 107-134 (239)
116 PF15066 CAGE1: Cancer-associa 91.2 40 0.00087 40.4 24.3 39 593-631 485-523 (527)
117 COG3883 Uncharacterized protei 91.1 30 0.00066 38.9 24.3 40 461-500 54-93 (265)
118 PRK09039 hypothetical protein; 91.1 36 0.00079 39.7 22.4 25 450-474 79-103 (343)
119 PF10168 Nup88: Nuclear pore c 90.9 22 0.00048 45.5 21.9 12 52-63 126-137 (717)
120 PLN02939 transferase, transfer 90.8 68 0.0015 42.3 29.5 101 578-679 354-460 (977)
121 KOG0963 Transcription factor/C 90.8 51 0.0011 40.9 35.5 59 602-662 294-352 (629)
122 PRK10929 putative mechanosensi 90.7 75 0.0016 42.7 43.2 16 411-426 75-90 (1109)
123 KOG4643 Uncharacterized coiled 90.3 71 0.0015 41.7 55.0 54 375-435 172-225 (1195)
124 PF15450 DUF4631: Domain of un 90.2 52 0.0011 40.1 54.9 45 783-827 374-418 (531)
125 KOG1937 Uncharacterized conser 90.2 48 0.001 39.6 37.2 72 487-563 293-365 (521)
126 PF04156 IncA: IncA protein; 90.0 17 0.00036 38.4 17.1 22 538-559 160-181 (191)
127 TIGR01005 eps_transp_fam exopo 90.0 28 0.00061 44.6 22.2 31 615-645 373-403 (754)
128 PRK06620 hypothetical protein; 89.4 0.18 3.9E-06 54.5 1.7 51 96-150 10-63 (214)
129 PF06160 EzrA: Septation ring 89.0 70 0.0015 39.9 49.4 13 867-879 472-484 (560)
130 KOG4360 Uncharacterized coiled 89.0 13 0.00028 44.8 16.2 135 410-558 168-304 (596)
131 PF09728 Taxilin: Myosin-like 88.9 51 0.0011 38.0 43.3 57 685-745 225-281 (309)
132 PF13851 GAS: Growth-arrest sp 88.8 38 0.00083 36.6 27.0 19 597-615 154-172 (201)
133 KOG1899 LAR transmembrane tyro 88.7 34 0.00074 42.2 19.6 117 449-565 136-267 (861)
134 COG2805 PilT Tfp pilus assembl 88.5 0.23 5E-06 56.1 1.8 31 119-149 113-143 (353)
135 PF14662 CCDC155: Coiled-coil 88.3 40 0.00086 36.2 24.6 11 466-476 43-53 (193)
136 COG4942 Membrane-bound metallo 88.1 67 0.0014 38.5 31.5 50 480-529 59-108 (420)
137 PF12252 SidE: Dot/Icm substra 88.0 1E+02 0.0022 40.5 29.0 122 578-716 1163-1286(1439)
138 KOG0964 Structural maintenance 87.9 1E+02 0.0022 40.3 44.1 34 761-794 469-502 (1200)
139 PRK12377 putative replication 87.8 0.31 6.8E-06 54.0 2.3 51 98-150 70-120 (248)
140 KOG0018 Structural maintenance 87.7 1.1E+02 0.0023 40.5 36.8 56 327-389 539-601 (1141)
141 PF09789 DUF2353: Uncharacteri 87.5 62 0.0013 37.5 27.6 103 523-635 73-178 (319)
142 COG4372 Uncharacterized protei 87.3 68 0.0015 37.7 33.2 58 325-388 7-65 (499)
143 PF14915 CCDC144C: CCDC144C pr 87.2 60 0.0013 37.0 41.5 18 413-430 4-21 (305)
144 KOG0018 Structural maintenance 87.1 1.2E+02 0.0025 40.2 37.6 71 359-429 92-174 (1141)
145 PRK14086 dnaA chromosomal repl 87.1 0.32 7E-06 60.1 2.0 52 96-150 282-333 (617)
146 PF08614 ATG16: Autophagy prot 86.9 5.8 0.00013 42.3 11.2 23 410-432 69-91 (194)
147 smart00787 Spc7 Spc7 kinetocho 86.8 44 0.00094 38.6 18.7 8 551-558 247-254 (312)
148 PF10481 CENP-F_N: Cenp-F N-te 86.7 45 0.00097 37.5 17.6 24 622-645 159-182 (307)
149 PRK05642 DNA replication initi 86.7 0.5 1.1E-05 51.7 3.0 48 96-150 13-64 (234)
150 PHA02562 46 endonuclease subun 86.7 89 0.0019 38.4 36.5 30 484-513 217-246 (562)
151 PRK06526 transposase; Provisio 86.5 0.3 6.6E-06 54.3 1.3 45 101-150 73-117 (254)
152 PRK12704 phosphodiesterase; Pr 86.5 43 0.00093 41.4 19.6 6 622-627 220-225 (520)
153 PF13870 DUF4201: Domain of un 86.3 47 0.001 34.8 21.7 75 432-513 36-117 (177)
154 COG2804 PulE Type II secretory 86.2 0.42 9.2E-06 57.4 2.3 32 119-150 246-277 (500)
155 KOG0996 Structural maintenance 86.1 1.4E+02 0.0029 40.0 61.7 55 851-905 1017-1071(1293)
156 PRK14088 dnaA chromosomal repl 86.0 0.37 8E-06 57.7 1.7 51 96-150 99-149 (440)
157 PRK08116 hypothetical protein; 85.8 0.39 8.5E-06 53.7 1.7 51 97-149 80-132 (268)
158 PF04156 IncA: IncA protein; 85.6 43 0.00093 35.3 16.9 16 488-503 131-146 (191)
159 PRK11281 hypothetical protein; 85.6 1.5E+02 0.0033 40.0 45.3 25 764-788 408-432 (1113)
160 PRK08084 DNA replication initi 85.5 0.47 1E-05 51.9 2.1 49 96-150 16-64 (235)
161 PRK09087 hypothetical protein; 85.5 0.43 9.4E-06 52.0 1.8 49 96-150 15-63 (226)
162 PF10174 Cast: RIM-binding pro 85.4 1.3E+02 0.0028 39.1 63.7 24 409-432 4-27 (775)
163 PF12718 Tropomyosin_1: Tropom 85.0 49 0.0011 33.9 20.5 7 623-629 127-133 (143)
164 PF04849 HAP1_N: HAP1 N-termin 84.7 82 0.0018 36.3 29.5 34 617-650 268-301 (306)
165 PF12325 TMF_TATA_bd: TATA ele 84.6 46 0.00099 33.2 15.6 29 613-641 91-119 (120)
166 PF08614 ATG16: Autophagy prot 84.6 13 0.00029 39.6 12.5 84 483-583 105-188 (194)
167 PRK07952 DNA replication prote 84.4 0.53 1.2E-05 52.1 1.9 52 97-150 67-118 (244)
168 PF10186 Atg14: UV radiation r 84.4 59 0.0013 36.3 18.3 14 411-424 23-36 (302)
169 PRK00149 dnaA chromosomal repl 84.3 0.57 1.2E-05 56.1 2.3 53 95-150 115-167 (450)
170 TIGR00362 DnaA chromosomal rep 84.3 0.58 1.2E-05 55.2 2.3 52 95-149 103-154 (405)
171 PF15070 GOLGA2L5: Putative go 84.3 1.3E+02 0.0028 38.1 39.9 29 825-853 411-439 (617)
172 TIGR03185 DNA_S_dndD DNA sulfu 84.2 1.3E+02 0.0028 38.2 41.7 13 417-429 184-196 (650)
173 PRK06835 DNA replication prote 84.0 0.42 9.1E-06 55.1 0.9 36 113-150 167-202 (329)
174 PF05701 WEMBL: Weak chloropla 84.0 1.2E+02 0.0026 37.5 51.2 32 751-783 414-445 (522)
175 PLN02939 transferase, transfer 83.9 1.6E+02 0.0035 39.0 32.5 57 754-810 449-513 (977)
176 TIGR03319 YmdA_YtgF conserved 83.5 70 0.0015 39.5 19.5 7 621-627 213-219 (514)
177 PF10168 Nup88: Nuclear pore c 83.0 75 0.0016 40.8 20.1 8 353-360 446-453 (717)
178 TIGR00634 recN DNA repair prot 82.9 1.3E+02 0.0029 37.3 26.8 15 135-149 26-40 (563)
179 PRK08727 hypothetical protein; 82.9 0.71 1.5E-05 50.5 2.1 46 97-150 14-60 (233)
180 PF15619 Lebercilin: Ciliary p 82.5 76 0.0016 34.2 26.1 36 615-650 154-189 (194)
181 PRK00106 hypothetical protein; 82.5 86 0.0019 38.9 19.6 148 389-558 53-206 (535)
182 KOG0999 Microtubule-associated 82.4 1.3E+02 0.0029 36.9 53.8 108 483-590 53-164 (772)
183 PRK08939 primosomal protein Dn 81.9 0.7 1.5E-05 52.8 1.6 51 99-150 124-175 (306)
184 PF12718 Tropomyosin_1: Tropom 81.8 66 0.0014 33.0 20.8 20 453-472 22-41 (143)
185 PF04851 ResIII: Type III rest 81.4 0.7 1.5E-05 46.9 1.3 29 122-150 15-44 (184)
186 COG1474 CDC6 Cdc6-related prot 81.4 1.7 3.7E-05 51.0 4.6 26 123-148 33-59 (366)
187 PF15290 Syntaphilin: Golgi-lo 81.2 55 0.0012 37.0 15.5 30 497-526 120-149 (305)
188 TIGR02680 conserved hypothetic 81.2 2.4E+02 0.0052 39.1 35.7 287 410-702 232-577 (1353)
189 KOG1850 Myosin-like coiled-coi 81.1 1.1E+02 0.0024 35.2 41.1 111 660-775 206-322 (391)
190 TIGR02928 orc1/cdc6 family rep 81.1 1.1 2.3E-05 51.7 2.8 21 128-148 37-57 (365)
191 PRK08181 transposase; Validate 81.0 0.9 1.9E-05 51.0 2.1 45 101-150 80-125 (269)
192 TIGR03420 DnaA_homol_Hda DnaA 81.0 1 2.2E-05 48.1 2.4 47 97-149 10-56 (226)
193 PF04111 APG6: Autophagy prote 80.9 27 0.00059 40.2 14.0 31 538-568 108-138 (314)
194 PF07464 ApoLp-III: Apolipopho 80.8 24 0.00052 36.7 12.1 25 678-702 105-129 (155)
195 cd00009 AAA The AAA+ (ATPases 80.4 1.1 2.4E-05 42.9 2.2 27 122-148 10-36 (151)
196 PRK14087 dnaA chromosomal repl 80.2 0.87 1.9E-05 54.8 1.7 50 98-150 111-160 (450)
197 PTZ00112 origin recognition co 80.1 1.7 3.8E-05 55.6 4.2 28 119-148 771-798 (1164)
198 KOG0250 DNA repair protein RAD 79.7 2.2E+02 0.0049 37.8 58.1 92 502-593 395-490 (1074)
199 PF05673 DUF815: Protein of un 79.5 2.6 5.5E-05 46.8 4.9 131 98-274 23-155 (249)
200 PRK00411 cdc6 cell division co 79.4 1.4 3E-05 51.4 3.0 20 129-148 53-72 (394)
201 COG0593 DnaA ATPase involved i 79.3 0.98 2.1E-05 53.5 1.7 53 95-150 80-132 (408)
202 PF03915 AIP3: Actin interacti 79.0 29 0.00063 41.7 13.6 18 410-427 222-239 (424)
203 PF05010 TACC: Transforming ac 78.9 1E+02 0.0023 33.6 29.3 20 543-562 83-102 (207)
204 PF04111 APG6: Autophagy prote 78.5 27 0.00059 40.2 13.0 26 626-651 167-192 (314)
205 KOG2129 Uncharacterized conser 77.5 1.6E+02 0.0035 35.0 21.5 23 538-560 203-225 (552)
206 PRK08903 DnaA regulatory inact 77.5 1.7 3.7E-05 46.8 2.8 49 96-149 12-60 (227)
207 PRK09841 cryptic autophosphory 77.1 74 0.0016 40.9 17.6 77 360-436 224-302 (726)
208 PTZ00454 26S protease regulato 76.7 1.6 3.4E-05 51.8 2.4 51 98-148 141-196 (398)
209 PF15397 DUF4618: Domain of un 76.6 1.4E+02 0.003 33.7 31.1 34 583-616 121-154 (258)
210 COG1484 DnaC DNA replication p 76.4 2 4.2E-05 47.9 3.0 51 97-150 74-124 (254)
211 TIGR03017 EpsF chain length de 76.2 1.8E+02 0.0038 34.8 22.1 25 450-474 176-200 (444)
212 PF00437 T2SE: Type II/IV secr 76.1 3.6 7.9E-05 45.6 5.0 29 121-149 114-145 (270)
213 COG4477 EzrA Negative regulato 75.7 2.1E+02 0.0045 35.3 48.0 16 864-879 472-487 (570)
214 KOG0249 LAR-interacting protei 75.6 2.4E+02 0.0052 36.0 24.5 18 457-474 96-113 (916)
215 KOG0804 Cytoplasmic Zn-finger 75.3 1.1E+02 0.0024 36.8 16.5 13 163-175 190-202 (493)
216 COG1340 Uncharacterized archae 75.2 1.6E+02 0.0035 33.8 36.8 13 550-562 107-119 (294)
217 KOG2129 Uncharacterized conser 75.1 1.9E+02 0.0041 34.5 28.5 12 549-560 131-142 (552)
218 TIGR00634 recN DNA repair prot 75.1 2.2E+02 0.0049 35.4 28.0 19 619-637 347-365 (563)
219 PRK10869 recombination and rep 74.9 2.3E+02 0.0049 35.4 27.5 18 128-148 22-39 (553)
220 KOG0946 ER-Golgi vesicle-tethe 74.7 2.7E+02 0.0058 36.1 31.6 8 56-63 149-156 (970)
221 PRK10436 hypothetical protein; 74.7 1.5 3.3E-05 52.9 1.6 29 122-150 209-237 (462)
222 PF06008 Laminin_I: Laminin Do 74.6 1.5E+02 0.0032 33.1 31.3 18 410-427 19-36 (264)
223 PF11932 DUF3450: Protein of u 74.6 1.4E+02 0.0031 33.0 17.0 23 525-547 94-116 (251)
224 PF12325 TMF_TATA_bd: TATA ele 74.6 97 0.0021 31.0 14.9 23 406-428 14-36 (120)
225 PF10473 CENP-F_leu_zip: Leuci 74.5 1.1E+02 0.0023 31.5 18.6 23 450-472 22-44 (140)
226 TIGR02538 type_IV_pilB type IV 74.3 1.5 3.2E-05 54.3 1.4 29 122-150 307-335 (564)
227 cd00046 DEXDc DEAD-like helica 74.3 1.2 2.5E-05 42.2 0.5 17 134-150 3-19 (144)
228 PF05557 MAD: Mitotic checkpoi 74.3 42 0.00092 43.0 14.4 22 410-431 259-280 (722)
229 PF08647 BRE1: BRE1 E3 ubiquit 74.2 75 0.0016 30.3 12.6 57 479-535 30-86 (96)
230 PRK10884 SH3 domain-containing 74.2 55 0.0012 35.6 13.1 22 407-428 92-113 (206)
231 PF00769 ERM: Ezrin/radixin/mo 74.2 1.5E+02 0.0033 33.0 17.4 39 516-554 83-121 (246)
232 PF01576 Myosin_tail_1: Myosin 74.0 1 2.2E-05 58.3 0.0 17 533-549 240-256 (859)
233 PF10234 Cluap1: Clusterin-ass 73.8 1.3E+02 0.0028 34.2 16.1 25 483-507 193-217 (267)
234 PF15450 DUF4631: Domain of un 73.8 2.3E+02 0.0049 34.9 50.0 74 524-600 253-326 (531)
235 KOG4302 Microtubule-associated 73.6 2.6E+02 0.0057 35.6 34.3 32 619-650 161-192 (660)
236 PF07926 TPR_MLP1_2: TPR/MLP1/ 73.6 1E+02 0.0023 30.9 20.0 56 537-592 60-115 (132)
237 PF06785 UPF0242: Uncharacteri 73.4 1.9E+02 0.004 33.7 23.7 35 468-502 87-121 (401)
238 KOG0804 Cytoplasmic Zn-finger 73.4 1.9E+02 0.004 35.0 17.7 14 344-357 209-222 (493)
239 PRK11519 tyrosine kinase; Prov 73.1 1.2E+02 0.0026 38.9 18.0 75 361-435 225-301 (719)
240 KOG0989 Replication factor C, 72.9 2.5 5.4E-05 48.2 2.6 37 113-149 38-75 (346)
241 TIGR01242 26Sp45 26S proteasom 72.8 4.1 8.9E-05 47.5 4.5 52 98-149 118-174 (364)
242 PRK11281 hypothetical protein; 72.6 3.6E+02 0.0078 36.7 42.1 23 541-563 232-254 (1113)
243 PF13245 AAA_19: Part of AAA d 72.5 1.8 3.8E-05 39.3 1.1 26 123-149 3-28 (76)
244 PF12329 TMF_DNA_bd: TATA elem 72.4 49 0.0011 30.2 10.3 38 523-560 34-71 (74)
245 TIGR02533 type_II_gspE general 72.3 2 4.4E-05 52.2 1.9 29 122-150 233-261 (486)
246 PF12072 DUF3552: Domain of un 72.3 1.5E+02 0.0032 32.0 19.5 12 549-560 164-175 (201)
247 PRK12705 hypothetical protein; 72.0 2.1E+02 0.0046 35.3 18.7 8 770-777 353-360 (508)
248 PF11932 DUF3450: Protein of u 71.9 1.3E+02 0.0028 33.4 15.8 66 445-510 49-114 (251)
249 PF07464 ApoLp-III: Apolipopho 71.9 64 0.0014 33.6 12.4 15 681-695 130-144 (155)
250 PRK03992 proteasome-activating 70.8 3.4 7.5E-05 48.7 3.4 51 98-148 127-182 (389)
251 PRK09183 transposase/IS protei 70.6 2.5 5.4E-05 47.2 2.0 45 101-150 77-121 (259)
252 PF10498 IFT57: Intra-flagella 70.6 1.1E+02 0.0024 36.1 15.4 55 466-520 266-320 (359)
253 PF09731 Mitofilin: Mitochondr 70.5 2.8E+02 0.0061 34.6 22.9 18 342-359 38-55 (582)
254 PRK06921 hypothetical protein; 70.4 2.5 5.3E-05 47.4 1.9 32 119-150 102-136 (266)
255 smart00382 AAA ATPases associa 70.4 1.7 3.6E-05 41.0 0.5 19 132-150 3-21 (148)
256 PF13401 AAA_22: AAA domain; P 70.3 1.4 2.9E-05 42.7 -0.1 18 131-148 4-21 (131)
257 KOG0962 DNA repair protein RAD 70.2 4.1E+02 0.0089 36.3 53.2 84 798-893 1050-1135(1294)
258 TIGR01010 BexC_CtrB_KpsE polys 70.2 1.4E+02 0.003 34.9 16.3 107 359-475 126-237 (362)
259 KOG0979 Structural maintenance 70.1 3.7E+02 0.0079 35.7 35.8 287 443-735 627-922 (1072)
260 PF09738 DUF2051: Double stran 70.0 84 0.0018 36.2 14.0 62 466-527 84-145 (302)
261 PF00270 DEAD: DEAD/DEAH box h 69.7 2.3 5E-05 42.8 1.4 26 123-150 8-33 (169)
262 KOG2991 Splicing regulator [RN 69.3 2E+02 0.0043 32.3 20.5 23 490-512 180-202 (330)
263 KOG4403 Cell surface glycoprot 69.1 2.6E+02 0.0056 33.6 18.0 38 605-642 377-414 (575)
264 KOG1003 Actin filament-coating 69.1 1.7E+02 0.0038 31.6 27.1 29 617-645 171-199 (205)
265 TIGR01420 pilT_fam pilus retra 69.1 2.4 5.2E-05 49.1 1.6 29 122-150 113-141 (343)
266 PF01576 Myosin_tail_1: Myosin 68.9 1.6 3.4E-05 56.7 0.0 85 814-902 289-376 (859)
267 PF07794 DUF1633: Protein of u 68.6 46 0.001 40.0 11.5 75 350-429 510-590 (790)
268 KOG0964 Structural maintenance 68.6 3.9E+02 0.0084 35.4 59.1 44 136-194 30-81 (1200)
269 TIGR01843 type_I_hlyD type I s 68.5 2.4E+02 0.0052 33.0 24.3 18 410-427 83-100 (423)
270 PTZ00361 26 proteosome regulat 68.4 4.8 0.0001 48.4 3.9 49 100-148 181-234 (438)
271 TIGR01843 type_I_hlyD type I s 68.4 2.4E+02 0.0052 33.0 23.4 10 450-459 86-95 (423)
272 PRK13894 conjugal transfer ATP 68.1 8.7 0.00019 44.3 5.8 29 120-149 138-166 (319)
273 PRK12422 chromosomal replicati 68.1 3.4 7.3E-05 49.7 2.5 53 95-150 104-160 (445)
274 PF13604 AAA_30: AAA domain; P 68.0 2.7 5.9E-05 44.7 1.5 28 122-149 9-36 (196)
275 PRK10884 SH3 domain-containing 67.7 80 0.0017 34.4 12.6 21 452-472 93-113 (206)
276 PF09602 PhaP_Bmeg: Polyhydrox 67.6 1.7E+02 0.0037 30.9 21.7 41 751-791 121-161 (165)
277 TIGR02524 dot_icm_DotB Dot/Icm 67.6 2.8 6E-05 49.1 1.6 24 127-150 130-153 (358)
278 KOG1962 B-cell receptor-associ 67.5 50 0.0011 36.1 10.9 37 525-561 175-211 (216)
279 smart00806 AIP3 Actin interact 67.2 2.8E+02 0.006 33.5 17.6 64 539-602 356-421 (426)
280 COG2433 Uncharacterized conser 67.0 1.9E+02 0.0042 36.1 16.6 89 465-564 421-509 (652)
281 PF11559 ADIP: Afadin- and alp 66.7 1.5E+02 0.0034 30.1 14.0 11 321-331 5-15 (151)
282 cd01131 PilT Pilus retraction 66.6 2.2 4.9E-05 45.4 0.6 18 132-149 2-19 (198)
283 PF01637 Arch_ATPase: Archaeal 66.5 2.6 5.6E-05 44.4 1.0 30 120-149 9-38 (234)
284 TIGR03015 pepcterm_ATPase puta 66.4 3.8 8.3E-05 44.9 2.4 23 127-149 39-61 (269)
285 TIGR02525 plasmid_TraJ plasmid 66.2 3 6.5E-05 49.0 1.6 20 130-149 148-167 (372)
286 COG2433 Uncharacterized conser 66.0 1.1E+02 0.0023 38.2 14.3 25 163-187 163-187 (652)
287 PF04849 HAP1_N: HAP1 N-termin 65.7 2.6E+02 0.0056 32.4 21.9 48 379-429 72-125 (306)
288 PF12846 AAA_10: AAA-like doma 65.6 2.3 5E-05 46.8 0.5 19 131-149 1-19 (304)
289 TIGR02782 TrbB_P P-type conjug 65.5 3.3 7.1E-05 47.2 1.7 30 119-149 121-150 (299)
290 PF01695 IstB_IS21: IstB-like 65.5 3.6 7.9E-05 43.2 1.9 19 132-150 48-66 (178)
291 cd01129 PulE-GspE PulE/GspE Th 65.5 3.6 7.8E-05 46.0 1.9 28 123-150 72-99 (264)
292 PF01935 DUF87: Domain of unkn 65.4 2.3 4.9E-05 45.9 0.3 15 134-148 26-40 (229)
293 PRK10929 putative mechanosensi 65.1 4.9E+02 0.011 35.4 47.3 25 764-788 384-408 (1109)
294 PF05970 PIF1: PIF1-like helic 64.8 3.6 7.7E-05 48.1 1.8 37 108-148 3-39 (364)
295 TIGR01000 bacteriocin_acc bact 63.9 3.3E+02 0.0071 32.9 24.9 17 410-426 106-122 (457)
296 PF14643 DUF4455: Domain of un 63.8 3.4E+02 0.0075 33.1 56.7 20 407-426 10-29 (473)
297 PF15254 CCDC14: Coiled-coil d 63.8 4.3E+02 0.0093 34.2 22.3 33 827-859 826-858 (861)
298 PRK01297 ATP-dependent RNA hel 63.7 11 0.00025 45.3 5.9 25 122-148 117-141 (475)
299 PRK10361 DNA recombination pro 63.5 3.6E+02 0.0077 33.2 26.9 25 607-631 136-160 (475)
300 PF00004 AAA: ATPase family as 62.7 2.9 6.2E-05 40.2 0.4 15 134-148 1-15 (132)
301 PF13086 AAA_11: AAA domain; P 62.5 3.5 7.6E-05 43.4 1.1 18 133-150 19-36 (236)
302 PF04912 Dynamitin: Dynamitin 62.3 3.3E+02 0.0071 32.3 26.9 22 408-429 94-115 (388)
303 PLN00020 ribulose bisphosphate 61.9 5.5 0.00012 46.9 2.6 53 96-148 109-165 (413)
304 COG0419 SbcC ATPase involved i 61.8 5E+02 0.011 34.4 70.1 17 132-148 26-42 (908)
305 PF05622 HOOK: HOOK protein; 61.6 2.6 5.7E-05 53.6 0.0 13 750-762 635-647 (713)
306 PF05622 HOOK: HOOK protein; 61.6 2.7 5.7E-05 53.6 0.0 24 230-253 131-154 (713)
307 COG5008 PilU Tfp pilus assembl 61.5 5.1 0.00011 44.9 2.1 35 115-149 110-145 (375)
308 PF12252 SidE: Dot/Icm substra 60.7 5.5E+02 0.012 34.4 37.6 21 409-429 1064-1084(1439)
309 PF13191 AAA_16: AAA ATPase do 60.7 2.6 5.7E-05 43.1 -0.2 22 127-148 20-41 (185)
310 KOG3091 Nuclear pore complex, 60.6 3E+02 0.0066 33.7 16.4 10 343-352 229-238 (508)
311 PRK10361 DNA recombination pro 60.2 4E+02 0.0088 32.7 28.2 35 616-650 163-197 (475)
312 PHA02544 44 clamp loader, smal 60.0 5.4 0.00012 45.1 2.1 22 128-149 39-61 (316)
313 PF08317 Spc7: Spc7 kinetochor 60.0 3.3E+02 0.0071 31.6 28.8 28 734-761 259-286 (325)
314 COG1340 Uncharacterized archae 59.5 3.3E+02 0.0071 31.4 36.9 27 620-646 202-228 (294)
315 smart00787 Spc7 Spc7 kinetocho 58.9 3.4E+02 0.0074 31.5 27.3 10 571-580 132-141 (312)
316 PRK12402 replication factor C 58.8 6 0.00013 44.9 2.2 42 100-149 13-54 (337)
317 TIGR00631 uvrb excinuclease AB 58.3 8.5 0.00018 48.6 3.6 91 99-199 2-98 (655)
318 TIGR03007 pepcterm_ChnLen poly 58.3 4.2E+02 0.009 32.2 20.8 27 618-644 355-381 (498)
319 PRK13833 conjugal transfer pro 57.9 5.4 0.00012 46.1 1.6 28 121-149 135-162 (323)
320 cd01130 VirB11-like_ATPase Typ 57.5 5.8 0.00013 41.7 1.7 30 119-149 14-43 (186)
321 PF10212 TTKRSYEDQ: Predicted 57.3 3.2E+02 0.0069 33.8 16.1 24 405-428 409-433 (518)
322 PF15066 CAGE1: Cancer-associa 57.1 4.4E+02 0.0095 32.1 29.9 40 605-644 447-486 (527)
323 KOG3091 Nuclear pore complex, 57.0 3.9E+02 0.0085 32.8 16.5 12 140-151 151-162 (508)
324 PF09738 DUF2051: Double stran 57.0 1.6E+02 0.0034 34.1 13.0 31 496-526 142-172 (302)
325 PF13479 AAA_24: AAA domain 56.7 4.4 9.5E-05 43.7 0.7 20 131-150 3-22 (213)
326 PF00448 SRP54: SRP54-type pro 56.5 3.8 8.3E-05 43.8 0.1 17 133-149 3-19 (196)
327 cd08915 V_Alix_like Protein-in 56.3 3.8E+02 0.0081 31.1 35.8 39 575-614 244-282 (342)
328 smart00487 DEXDc DEAD-like hel 56.3 6.8 0.00015 39.5 1.9 26 124-150 18-43 (201)
329 PF03999 MAP65_ASE1: Microtubu 56.0 56 0.0012 41.2 10.2 26 619-644 229-254 (619)
330 PF12004 DUF3498: Domain of un 55.7 3.8 8.3E-05 49.6 0.0 38 509-546 452-489 (495)
331 KOG0288 WD40 repeat protein Ti 55.6 4.4E+02 0.0095 31.7 17.0 54 453-513 14-67 (459)
332 KOG0340 ATP-dependent RNA heli 55.4 12 0.00026 43.6 3.7 29 121-151 36-64 (442)
333 PF00910 RNA_helicase: RNA hel 55.1 4 8.7E-05 39.1 0.0 16 134-149 1-16 (107)
334 PF13207 AAA_17: AAA domain; P 55.1 4.5 9.8E-05 38.7 0.4 16 133-148 1-16 (121)
335 KOG0980 Actin-binding protein 55.1 6.2E+02 0.013 33.3 60.8 41 826-867 824-864 (980)
336 PF06785 UPF0242: Uncharacteri 54.9 4.1E+02 0.0088 31.1 23.6 13 723-735 284-296 (401)
337 PF10481 CENP-F_N: Cenp-F N-te 54.8 3.1E+02 0.0067 31.2 14.1 10 453-462 19-28 (307)
338 PHA00729 NTP-binding motif con 54.6 8.3 0.00018 42.4 2.4 31 119-149 5-35 (226)
339 KOG4460 Nuclear pore complex, 54.3 5.2E+02 0.011 32.2 18.8 147 520-684 572-735 (741)
340 PHA03332 membrane glycoprotein 54.3 5.6E+02 0.012 34.3 17.9 33 579-611 983-1015(1328)
341 PF09304 Cortex-I_coil: Cortex 53.6 2.3E+02 0.005 27.9 14.5 66 479-559 36-102 (107)
342 COG4962 CpaF Flp pilus assembl 53.5 6.7 0.00014 45.5 1.5 30 119-149 162-191 (355)
343 KOG0250 DNA repair protein RAD 53.4 7.1E+02 0.015 33.5 65.3 35 941-975 914-948 (1074)
344 PF00580 UvrD-helicase: UvrD/R 53.1 5.4 0.00012 44.2 0.6 22 129-150 11-32 (315)
345 KOG2150 CCR4-NOT transcription 53.1 3.7E+02 0.0081 33.5 15.7 14 411-424 4-17 (575)
346 PLN03025 replication factor C 52.9 8.3 0.00018 44.1 2.1 18 133-150 36-53 (319)
347 KOG0288 WD40 repeat protein Ti 52.8 4.8E+02 0.01 31.4 17.5 43 453-495 21-63 (459)
348 cd07666 BAR_SNX7 The Bin/Amphi 52.7 3.8E+02 0.0082 30.1 26.8 9 416-424 62-70 (243)
349 COG4026 Uncharacterized protei 52.6 3.6E+02 0.0078 29.8 17.8 9 358-366 30-38 (290)
350 PF01044 Vinculin: Vinculin fa 52.0 7.4E+02 0.016 33.3 35.3 124 749-879 513-647 (968)
351 PF01540 Lipoprotein_7: Adhesi 51.4 4.1E+02 0.0089 30.1 27.9 25 620-645 223-247 (353)
352 PF02562 PhoH: PhoH-like prote 51.4 8.4 0.00018 41.7 1.7 21 130-150 18-38 (205)
353 PF10234 Cluap1: Clusterin-ass 51.2 4.2E+02 0.0091 30.2 19.4 33 531-563 171-203 (267)
354 PF09728 Taxilin: Myosin-like 51.2 4.5E+02 0.0097 30.5 40.2 69 467-535 23-91 (309)
355 PF03962 Mnd1: Mnd1 family; I 51.0 3.4E+02 0.0074 29.1 14.5 24 452-475 69-92 (188)
356 COG4026 Uncharacterized protei 50.5 1.6E+02 0.0035 32.3 10.9 26 483-508 152-177 (290)
357 cd00268 DEADc DEAD-box helicas 50.4 9.5 0.00021 39.9 2.0 22 124-147 31-52 (203)
358 TIGR02903 spore_lon_C ATP-depe 50.3 7.9 0.00017 48.5 1.5 43 98-148 150-192 (615)
359 PRK13900 type IV secretion sys 50.2 8.5 0.00018 44.6 1.6 30 120-150 150-179 (332)
360 PF13851 GAS: Growth-arrest sp 50.1 3.7E+02 0.0079 29.2 28.8 45 600-644 114-158 (201)
361 PF10267 Tmemb_cc2: Predicted 50.0 5.3E+02 0.011 31.0 16.6 10 194-203 74-83 (395)
362 PF06309 Torsin: Torsin; Inte 49.8 7.5 0.00016 39.0 1.0 16 133-148 55-70 (127)
363 KOG2911 Uncharacterized conser 49.6 4.9E+02 0.011 31.5 15.6 39 660-698 316-356 (439)
364 PF08397 IMD: IRSp53/MIM homol 49.4 3.8E+02 0.0082 29.1 23.8 69 707-779 57-126 (219)
365 PF06818 Fez1: Fez1; InterPro 49.4 3.9E+02 0.0084 29.2 21.1 38 580-617 136-173 (202)
366 PF15397 DUF4618: Domain of un 49.4 4.4E+02 0.0095 29.9 32.0 19 620-638 122-140 (258)
367 PF07728 AAA_5: AAA domain (dy 49.2 5.5 0.00012 39.3 -0.0 15 134-148 2-16 (139)
368 COG1223 Predicted ATPase (AAA+ 49.1 6.8 0.00015 43.9 0.6 17 132-148 152-168 (368)
369 PF13671 AAA_33: AAA domain; P 49.0 6.8 0.00015 38.5 0.5 15 134-148 2-16 (143)
370 PF05791 Bacillus_HBL: Bacillu 49.0 3.6E+02 0.0077 28.7 16.2 28 621-648 113-140 (184)
371 PRK13851 type IV secretion sys 48.7 6.8 0.00015 45.7 0.5 30 120-150 152-181 (344)
372 COG2256 MGS1 ATPase related to 48.4 10 0.00022 44.9 1.9 43 100-147 22-64 (436)
373 KOG4302 Microtubule-associated 48.4 7E+02 0.015 31.9 33.0 20 864-883 378-397 (660)
374 PRK10536 hypothetical protein; 48.3 10 0.00022 42.6 1.8 42 98-149 51-92 (262)
375 TIGR00635 ruvB Holliday juncti 48.3 10 0.00022 42.6 2.0 39 110-149 8-48 (305)
376 PF14992 TMCO5: TMCO5 family 48.1 4.8E+02 0.01 29.9 15.8 23 540-562 74-96 (280)
377 TIGR03319 YmdA_YtgF conserved 48.0 6.4E+02 0.014 31.3 22.2 17 1005-1022 438-454 (514)
378 PF01580 FtsK_SpoIIIE: FtsK/Sp 47.7 6.1 0.00013 41.9 -0.0 17 133-149 40-56 (205)
379 PRK10869 recombination and rep 47.5 6.6E+02 0.014 31.4 28.4 17 620-636 343-359 (553)
380 PRK13342 recombination factor 47.4 9.8 0.00021 45.2 1.6 45 100-149 10-54 (413)
381 COG4913 Uncharacterized protei 47.3 7.5E+02 0.016 32.0 28.3 19 329-347 430-448 (1104)
382 PTZ00424 helicase 45; Provisio 47.2 10 0.00022 44.2 1.8 25 122-148 58-82 (401)
383 PF12777 MT: Microtubule-bindi 47.2 1E+02 0.0022 35.9 9.9 13 325-337 86-98 (344)
384 CHL00081 chlI Mg-protoporyphyr 47.2 8 0.00017 45.2 0.8 45 97-149 12-56 (350)
385 KOG1937 Uncharacterized conser 47.0 6.1E+02 0.013 30.9 35.7 42 733-775 476-518 (521)
386 PF10498 IFT57: Intra-flagella 47.0 5E+02 0.011 30.8 15.3 9 539-547 216-224 (359)
387 TIGR01069 mutS2 MutS2 family p 47.0 4.2E+02 0.0092 34.5 16.1 8 341-348 352-359 (771)
388 PF15290 Syntaphilin: Golgi-lo 47.0 4.3E+02 0.0094 30.2 13.8 24 450-473 73-96 (305)
389 PF05496 RuvB_N: Holliday junc 47.0 17 0.00036 40.2 3.2 41 106-147 24-66 (233)
390 KOG0926 DEAH-box RNA helicase 46.8 13 0.00028 47.2 2.4 18 131-148 271-288 (1172)
391 PLN03229 acetyl-coenzyme A car 46.7 7.8E+02 0.017 32.0 28.5 18 411-428 432-449 (762)
392 PRK13764 ATPase; Provisional 46.4 9.5 0.00021 47.6 1.3 22 129-150 255-276 (602)
393 TIGR02881 spore_V_K stage V sp 46.3 8.7 0.00019 42.6 0.9 18 132-149 43-60 (261)
394 COG1222 RPT1 ATP-dependent 26S 46.2 25 0.00053 41.3 4.4 94 51-146 93-200 (406)
395 PF04912 Dynamitin: Dynamitin 45.8 5.8E+02 0.013 30.3 20.4 28 621-648 353-380 (388)
396 PF07724 AAA_2: AAA domain (Cd 45.8 8.1 0.00018 40.4 0.6 17 132-148 4-20 (171)
397 PRK11776 ATP-dependent RNA hel 45.7 11 0.00025 45.1 1.9 22 124-147 36-57 (460)
398 PF09730 BicD: Microtubule-ass 45.2 8.1E+02 0.018 31.8 41.9 47 475-521 99-148 (717)
399 PF06008 Laminin_I: Laminin Do 45.2 4.8E+02 0.01 29.1 31.8 22 538-559 89-110 (264)
400 KOG1924 RhoA GTPase effector D 45.0 31 0.00067 43.7 5.2 47 6-52 546-596 (1102)
401 TIGR03499 FlhF flagellar biosy 44.9 8.2 0.00018 43.6 0.5 18 133-150 196-213 (282)
402 PRK06547 hypothetical protein; 44.8 15 0.00034 38.4 2.4 29 120-148 4-32 (172)
403 PF13238 AAA_18: AAA domain; P 44.5 8.8 0.00019 36.6 0.5 15 134-148 1-15 (129)
404 PF05557 MAD: Mitotic checkpoi 44.5 1.5E+02 0.0032 38.2 11.5 27 620-646 615-641 (722)
405 PF07106 TBPIP: Tat binding pr 44.5 3.8E+02 0.0083 27.8 12.7 11 413-423 77-87 (169)
406 PF03215 Rad17: Rad17 cell cyc 44.5 12 0.00026 46.0 1.9 31 119-149 31-63 (519)
407 PRK04195 replication factor C 44.4 10 0.00023 46.0 1.3 31 119-149 26-57 (482)
408 PF07139 DUF1387: Protein of u 44.3 5.6E+02 0.012 29.6 16.9 67 580-646 187-253 (302)
409 PRK11331 5-methylcytosine-spec 44.3 13 0.00028 44.9 2.0 30 358-391 319-348 (459)
410 PRK12723 flagellar biosynthesi 44.2 9.3 0.0002 45.3 0.8 19 131-149 174-192 (388)
411 PF14643 DUF4455: Domain of un 44.0 6.9E+02 0.015 30.6 51.2 29 534-562 31-59 (473)
412 PRK00409 recombination and DNA 43.9 6.6E+02 0.014 32.9 17.1 10 338-347 354-363 (782)
413 KOG4403 Cell surface glycoprot 43.7 6.7E+02 0.014 30.4 18.4 24 613-636 392-415 (575)
414 PRK00440 rfc replication facto 43.6 15 0.00032 41.3 2.2 21 128-148 35-55 (319)
415 PF03114 BAR: BAR domain; Int 43.5 4.1E+02 0.0088 27.8 22.6 218 413-649 1-229 (229)
416 PF09731 Mitofilin: Mitochondr 43.4 7.5E+02 0.016 30.8 27.3 86 793-879 413-506 (582)
417 PF03904 DUF334: Domain of unk 43.4 5E+02 0.011 28.8 18.9 32 602-633 122-153 (230)
418 PF05010 TACC: Transforming ac 43.1 4.8E+02 0.01 28.6 29.9 12 412-423 6-17 (207)
419 COG1382 GimC Prefoldin, chaper 42.8 3.6E+02 0.0079 27.0 13.0 17 483-499 30-46 (119)
420 KOG2373 Predicted mitochondria 42.7 19 0.0004 41.9 2.8 28 121-149 261-291 (514)
421 PF00015 MCPsignal: Methyl-acc 42.6 4.2E+02 0.0091 27.7 24.1 19 554-572 47-65 (213)
422 PRK11192 ATP-dependent RNA hel 42.4 14 0.0003 44.0 1.8 23 123-147 32-54 (434)
423 cd09234 V_HD-PTP_like Protein- 42.4 6.1E+02 0.013 29.5 31.8 23 681-703 312-334 (337)
424 PRK00080 ruvB Holliday junctio 42.3 15 0.00032 42.2 2.0 18 132-149 52-69 (328)
425 KOG0999 Microtubule-associated 41.9 7.9E+02 0.017 30.7 48.7 64 409-475 9-73 (772)
426 PF09755 DUF2046: Uncharacteri 41.7 6.2E+02 0.013 29.4 35.8 23 686-708 225-247 (310)
427 KOG2264 Exostosin EXT1L [Signa 41.4 1.4E+02 0.0031 36.7 9.8 24 866-892 463-486 (907)
428 TIGR01241 FtsH_fam ATP-depende 41.3 10 0.00022 46.2 0.5 51 98-149 51-106 (495)
429 KOG2196 Nuclear porin [Nuclear 41.2 5.6E+02 0.012 28.8 17.0 9 666-674 142-150 (254)
430 PF06048 DUF927: Domain of unk 41.0 17 0.00036 41.2 2.1 32 117-149 180-211 (286)
431 KOG2543 Origin recognition com 41.0 9.9 0.00021 44.7 0.3 38 133-196 32-69 (438)
432 PRK14722 flhF flagellar biosyn 41.0 11 0.00023 44.5 0.6 19 131-149 137-155 (374)
433 PF13870 DUF4201: Domain of un 40.8 4.5E+02 0.0097 27.5 22.4 17 491-507 53-69 (177)
434 TIGR02902 spore_lonB ATP-depen 40.8 15 0.00033 45.2 2.0 44 97-148 60-103 (531)
435 TIGR01817 nifA Nif-specific re 40.7 34 0.00074 42.0 4.9 45 98-148 192-236 (534)
436 PRK04328 hypothetical protein; 40.5 18 0.00038 40.1 2.2 29 119-147 8-39 (249)
437 PF06818 Fez1: Fez1; InterPro 40.5 5.3E+02 0.011 28.2 21.6 55 414-477 9-63 (202)
438 PF08172 CASP_C: CASP C termin 40.2 3.8E+02 0.0083 30.1 12.5 86 410-518 1-131 (248)
439 PRK04837 ATP-dependent RNA hel 40.1 15 0.00033 43.5 1.7 23 124-148 40-62 (423)
440 KOG3647 Predicted coiled-coil 40.1 6.1E+02 0.013 28.9 17.1 39 533-571 116-154 (338)
441 PF06414 Zeta_toxin: Zeta toxi 40.0 11 0.00024 40.0 0.5 20 130-149 14-33 (199)
442 KOG1853 LIS1-interacting prote 40.0 5.9E+02 0.013 28.7 22.5 17 683-699 251-267 (333)
443 TIGR02237 recomb_radB DNA repa 40.0 14 0.00031 39.1 1.3 25 124-148 2-29 (209)
444 COG1419 FlhF Flagellar GTP-bin 39.6 18 0.00038 43.1 2.1 37 112-148 180-220 (407)
445 TIGR01541 tape_meas_lam_C phag 39.6 6.8E+02 0.015 29.3 29.0 19 610-628 136-154 (332)
446 cd01123 Rad51_DMC1_radA Rad51_ 39.1 17 0.00037 39.1 1.8 30 119-148 4-36 (235)
447 TIGR01069 mutS2 MutS2 family p 39.1 7.6E+02 0.016 32.3 16.6 12 137-148 208-219 (771)
448 PF04740 LXG: LXG domain of WX 38.7 5E+02 0.011 27.5 22.6 181 595-784 5-191 (204)
449 PF04108 APG17: Autophagy prot 38.6 7.7E+02 0.017 29.6 40.6 320 454-792 46-393 (412)
450 PRK06067 flagellar accessory p 38.4 19 0.00042 39.0 2.1 31 118-148 9-42 (234)
451 PRK01156 chromosome segregatio 38.3 1.1E+03 0.023 31.2 69.8 16 133-148 25-40 (895)
452 PRK10590 ATP-dependent RNA hel 38.3 18 0.00039 43.5 2.0 24 123-148 32-55 (456)
453 PF05729 NACHT: NACHT domain 38.3 13 0.00027 37.0 0.6 17 133-149 2-18 (166)
454 KOG1962 B-cell receptor-associ 38.3 4.9E+02 0.011 28.7 12.5 44 345-397 25-69 (216)
455 PF00063 Myosin_head: Myosin h 38.3 16 0.00035 46.4 1.6 37 112-148 66-102 (689)
456 TIGR02231 conserved hypothetic 37.8 3E+02 0.0065 33.9 12.4 20 409-428 72-91 (525)
457 cd01120 RecA-like_NTPases RecA 37.8 12 0.00026 36.9 0.3 16 134-149 2-17 (165)
458 PF04102 SlyX: SlyX; InterPro 37.6 1.4E+02 0.0031 26.7 7.1 45 452-496 4-48 (69)
459 COG5280 Phage-related minor ta 37.5 9.7E+02 0.021 30.5 21.2 190 590-782 118-324 (634)
460 PF15030 DUF4527: Protein of u 37.4 6.4E+02 0.014 28.3 15.0 46 484-529 55-100 (277)
461 KOG0738 AAA+-type ATPase [Post 37.2 57 0.0012 38.8 5.5 45 101-145 211-259 (491)
462 KOG0736 Peroxisome assembly fa 37.1 38 0.00083 43.2 4.4 22 159-180 783-804 (953)
463 PRK02119 hypothetical protein; 37.0 2E+02 0.0044 26.2 8.0 42 451-492 8-49 (73)
464 smart00502 BBC B-Box C-termina 37.0 3.7E+02 0.0081 25.5 17.2 17 621-637 31-47 (127)
465 KOG1803 DNA helicase [Replicat 36.8 14 0.0003 45.7 0.7 18 132-149 202-219 (649)
466 TIGR02640 gas_vesic_GvpN gas v 36.8 24 0.00052 39.3 2.5 28 119-148 11-38 (262)
467 PF02456 Adeno_IVa2: Adenoviru 36.6 12 0.00026 42.9 0.1 42 134-175 90-139 (369)
468 PF00735 Septin: Septin; Inte 36.6 10 0.00022 42.9 -0.4 21 128-148 1-21 (281)
469 COG0606 Predicted ATPase with 36.5 14 0.00031 44.6 0.7 31 128-170 196-226 (490)
470 COG2607 Predicted ATPase (AAA+ 36.4 45 0.00098 37.3 4.4 50 124-201 77-127 (287)
471 PF12775 AAA_7: P-loop contain 36.4 17 0.00037 40.9 1.3 19 131-149 33-51 (272)
472 PRK09361 radB DNA repair and r 36.4 22 0.00048 38.2 2.1 32 118-149 7-41 (225)
473 PRK00409 recombination and DNA 36.3 9.9E+02 0.021 31.3 17.1 12 137-148 213-224 (782)
474 PF12795 MscS_porin: Mechanose 36.2 6.2E+02 0.013 27.8 23.0 22 409-430 46-67 (240)
475 PRK15374 pathogenicity island 36.2 9.6E+02 0.021 30.0 25.5 42 737-778 277-320 (593)
476 COG1219 ClpX ATP-dependent pro 36.1 15 0.00034 42.3 0.9 46 132-177 98-150 (408)
477 TIGR01243 CDC48 AAA family ATP 36.0 15 0.00033 46.9 1.0 51 98-148 174-229 (733)
478 TIGR00348 hsdR type I site-spe 36.0 21 0.00044 45.4 2.0 32 118-150 246-282 (667)
479 PF02403 Seryl_tRNA_N: Seryl-t 35.8 4E+02 0.0086 25.5 11.8 32 437-468 28-59 (108)
480 PF13173 AAA_14: AAA domain 35.8 15 0.00032 36.1 0.6 17 133-149 4-20 (128)
481 TIGR01618 phage_P_loop phage n 35.7 14 0.00031 40.4 0.5 20 131-150 12-31 (220)
482 COG4372 Uncharacterized protei 35.7 8.4E+02 0.018 29.2 37.9 13 665-677 273-285 (499)
483 PRK11519 tyrosine kinase; Prov 35.7 1.1E+03 0.023 30.5 18.2 31 615-645 367-397 (719)
484 PF06745 KaiC: KaiC; InterPro 35.3 21 0.00045 38.4 1.7 28 120-147 5-35 (226)
485 COG1201 Lhr Lhr-like helicases 35.3 24 0.00052 45.6 2.4 24 123-148 31-54 (814)
486 cd09234 V_HD-PTP_like Protein- 35.1 7.8E+02 0.017 28.6 29.2 33 670-702 235-267 (337)
487 PRK13341 recombination factor 35.0 20 0.00044 45.9 1.7 43 105-148 27-69 (725)
488 KOG4593 Mitotic checkpoint pro 34.9 1.1E+03 0.024 30.3 58.4 498 395-955 49-574 (716)
489 PF13476 AAA_23: AAA domain; P 34.9 14 0.0003 38.0 0.3 18 131-148 19-36 (202)
490 PRK10865 protein disaggregatio 34.8 26 0.00056 45.8 2.7 42 101-147 567-614 (857)
491 PHA02244 ATPase-like protein 34.4 31 0.00067 40.8 3.0 45 100-146 90-134 (383)
492 smart00763 AAA_PrkA PrkA AAA d 34.4 33 0.00072 40.3 3.2 42 101-146 49-93 (361)
493 TIGR00376 DNA helicase, putati 34.3 21 0.00045 45.1 1.7 33 115-148 158-190 (637)
494 PF00769 ERM: Ezrin/radixin/mo 34.2 7E+02 0.015 27.8 18.2 131 448-578 1-131 (246)
495 cd09238 V_Alix_like_1 Protein- 34.1 8.1E+02 0.018 28.5 29.8 250 420-674 61-336 (339)
496 KOG0651 26S proteasome regulat 34.0 13 0.00029 42.6 -0.0 53 94-146 124-181 (388)
497 KOG0239 Kinesin (KAR3 subfamil 34.0 1.1E+03 0.025 30.2 18.5 142 445-591 175-316 (670)
498 PF09789 DUF2353: Uncharacteri 33.9 8.3E+02 0.018 28.6 29.6 250 405-670 6-319 (319)
499 cd09237 V_ScBro1_like Protein- 33.8 8.3E+02 0.018 28.6 32.3 256 424-694 59-355 (356)
500 KOG4460 Nuclear pore complex, 33.8 1E+03 0.023 29.7 21.2 180 595-789 558-739 (741)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-175 Score=1569.72 Aligned_cols=1037 Identities=45% Similarity=0.662 Sum_probs=991.9
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCCCchhhhcCCCcEEEecCCc
Q 001572 2 MSLTPDQFRKVGTGLTPSPSPFLTPRPERRRPESRGSDWNSNRHDRDKEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDK 81 (1051)
Q Consensus 2 ~~~t~~~~~~~~~g~~~s~~p~~~p~~~~~~~~~~~~~~~s~~~~~~~~~nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~ 81 (1051)
|+-+|.|+|+++.+.+|.+.|..+|+.++..+.. .....+++..++++.||+|+|||||++++|....++.||+|++.+
T Consensus 1 ~~~~~~~~r~~~~~~~~~~~p~~~~~~~~~~~~~-s~s~~~~k~~~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~ 79 (1041)
T KOG0243|consen 1 MANSPSSSRSSIVQESPCRTPRETQRSNRDSSGP-SNSNTSSKDHKEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIR 79 (1041)
T ss_pred CCCCCCCCcccccccccCCCCCcCCCCccCCCCC-CCCCcccCCCCCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCc
Confidence 4557778888888777878888888886655442 233456667788899999999999999999999999999999988
Q ss_pred ceEEEEeccCCCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceeccCCCCCCCCCCC
Q 001572 82 REVTVLQSVANKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPA 161 (1051)
Q Consensus 82 ~~v~v~~~~~~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~ 161 (1051)
++|.|.+..+++..+|+|+||+||||.+.|.+||+.+|.|+|..|+.||||||||||||||||||||+|+....+|..|+
T Consensus 80 kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~ 159 (1041)
T KOG0243|consen 80 KEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPS 159 (1041)
T ss_pred ceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCc
Confidence 89999988777778999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred CCcchhHHHHHHHHHHhhcccCcccEEEEEEEEccccccccccCCCC-CcccccCCCceeeeecCCCceEEcCceEEEcC
Q 001572 162 EAGVIPRAVRQIFDTLEAQNADYSMKVSFLELYNEDITDLLAQEDHS-KSTEDKQKKPISLMEDGKGCVVVRGLEEEAVY 240 (1051)
Q Consensus 162 ~~GIIpRal~~LF~~le~~~~~~sV~vS~lEIYnE~v~DLL~~~~~~-~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~ 240 (1051)
++|||||++.+||+.++.++.+|+|+|||||+|||+|+|||++.... .........++. +++|||+|+||.|+.|+
T Consensus 160 ~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~---~~kggV~vkGlEEi~V~ 236 (1041)
T KOG0243|consen 160 EAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIV---DGKGGVIVKGLEEIIVT 236 (1041)
T ss_pred cCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccccccccccccCCccc---CCcCcEEEecceeeeec
Confidence 99999999999999999999999999999999999999999998754 222222222332 67999999999999999
Q ss_pred CHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEecccCCcceeEeeeeeEeeCCCCcccccCCCchhhhHHH
Q 001572 241 SANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSGAREGRAREA 320 (1051)
Q Consensus 241 s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa 320 (1051)
++.|++++|.+|..+|++++|.||++|||||+||+|+|++++.+++|++++++||||||||||||+++++||.++|++||
T Consensus 237 ~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEA 316 (1041)
T KOG0243|consen 237 NADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREA 316 (1041)
T ss_pred chhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhcccceeeccccccccccccccchhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhhCCCCCcCCCCchhhhhhhccCCCcceeEEeecCCCCCChHhhHHHHHHHHHhhhccccccc
Q 001572 321 GEINKSLLTLGRVINALVEHSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEA 400 (1051)
Q Consensus 321 ~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLTrLLqdSLGGnskT~mIatISPs~~~~eETLsTL~fA~RAk~Iknkp~v 400 (1051)
+.||+||+||||||+||+++++|||||+|||||||||||||++||||||||||+..+++||||||.||.|||+|+|+|++
T Consensus 317 G~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPev 396 (1041)
T KOG0243|consen 317 GEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEV 396 (1041)
T ss_pred hhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001572 401 NQKMSKAVLLKDLYLEIERMKEDVRAARDKNGVYVPHERYAQEEAEKKARIEKIEQLENDLNLSEKEVDRFRELYLTEQE 480 (1051)
Q Consensus 401 N~~~~k~~lik~l~~EI~~Lk~eL~~~r~~~g~~~~~e~~~~~e~e~~~~~~~i~~le~~l~~~~~el~~l~~~~~~~~~ 480 (1051)
||++.|++++++|+.||++||.+|.++|+|||+|++.++|-+++.|.+.+.++|++++.+++..++++.++++.|..+..
T Consensus 397 NQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~ 476 (1041)
T KOG0243|consen 397 NQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLE 476 (1041)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 001572 481 QKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEFIISKLLCSEKSIIEQAKELRNELQNASEDITSLFSKLD 560 (1051)
Q Consensus 481 ~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl~ 560 (1051)
....+.+++++++..|.....++..+++++.+++..|++++++++++.++|..+..++..|+..++....|+++|+.||+
T Consensus 477 ~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld 556 (1041)
T KOG0243|consen 477 IKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLD 556 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 561 QKDRMEAENQSLVLSFGSQLDQSLKGLHKTILGSVSQQQQQLRCMEEHAQSFLASKCDATHILESRIKRMSETYTAGLEL 640 (1051)
Q Consensus 561 rk~~~~~~n~~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 640 (1051)
|+.++...|+.+...|..++.++++.++..++....++..++..++..+.+|++.+......++.++...++.+.++++.
T Consensus 557 ~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~~s~~s~~~~~~e~~~t~~~~~r~~~~~~~e~ 636 (1041)
T KOG0243|consen 557 RKDRLDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLAQMESFLSAKSKATEIMKTKISKDRDILSEVLES 636 (1041)
T ss_pred hhhccccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHhhhhccchhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001572 641 LKELDNSMQKKASSDMEQISSKVSSQTMAVEQFLVTMVSEGKEVIEDIKNSLSQQKELLALSAQQQEEGLQRSWISSQEI 720 (1051)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1051)
++.+...++....+.++.+...+.+|+..++.++..+...++.+++++++.|..|++.++.+++|++..+..+...++++
T Consensus 637 ~q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~q~~~~~l~~~qe~~~~~~~~~~~~~~ 716 (1041)
T KOG0243|consen 637 LQQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLSNQQEILSLFANQELQELVLSQDSAQEL 716 (1041)
T ss_pred HHHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhHHHhHHhhHhh
Q 001572 721 SKATMDFFNDIHRQASKLKTILEESQTEKSKELDNFKKTFKEEAAKEEKDALEKIAVILANLTSRKTAMVSKASSNIQDT 800 (1051)
Q Consensus 721 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 800 (1051)
+..+..||++++.++.++.....+.+......+.+|++.|+. .+.+.++++++|+.++.++.+++.++++.++..++..
T Consensus 717 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~e~~~~~~q~~~e~~~~~~~~~~~~ 795 (1041)
T KOG0243|consen 717 SELTSTFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFES-IAEDEKQLVEDIKELLSSHDQRNNELLDIALQTLRSA 795 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999 8889999999999999999999999999999999999
Q ss_pred HHHhhHHHHHhhhHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhh
Q 001572 801 NIQQNKRLQNEISSVQQVSTDARKELSKYIQNVESHFMEDTFSAAESRAIMENSLQECSKTVDSSRQQWEYAQSYIRNLN 880 (1051)
Q Consensus 801 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~m~~~lq~~~~~~~~~~~~~~~~~~~~~~l~ 880 (1051)
.......+.+.++.|+..+.+.+..|..+.+++++++.+...+++.+++.|+..++.|...+.+.+.+|+.+++++.++.
T Consensus 796 ~~~~~~~~~e~~~~~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~ 875 (1041)
T KOG0243|consen 796 VNSRESNLTESVSVMQNLSDDLKTIWQTLGKQNENHHNEVLSAIEEKQQAMKSVLKELLENAESQVDECKEAIESLKSLE 875 (1041)
T ss_pred hccchhHHHHhhHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHhhhhHHHHHhhhhhcccchhhhhhhhhhHHHHhHHHhHhhhhhhhhhHHHHHhHhhhHHHHhhhc
Q 001572 881 TSSTAEIKSAIKENISANQTAHEEFKSACSSMDMDFGAKAGDIVVSVNDLLMRDRESKMEIDSITTICLDQLKFVQEKHG 960 (1051)
Q Consensus 881 ~~~~~~~~~~v~~~~~~n~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~h~ 960 (1051)
..+++.+++++++..++|..|+.+|.++..+.+..|+....++.+.++.++..+.+.+.++..++.+|++.|..|+.+|.
T Consensus 876 ~~~~~~~~~l~~~~~~~~~k~~~e~~s~~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~~~~~ 955 (1041)
T KOG0243|consen 876 SNHVATLDSLVRGVSEQNKKLQDEFLSLLNSKLNSFDVLTNSIVTPHSILLKLDDDVLPETLVIISPSLELLGELFQDLE 955 (1041)
T ss_pred hccchHHHHHHhhhhhhhHHhhHHHHHHHhHHHhhhhhccccccccccccccccccccccchHhhcccHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHhhhhhhhhhhhhcccCCCCCCCCccc-CCCCChhhHhhhcCccchhhchhhhcccccccc-CCCCCchhhhhcc
Q 001572 961 ENLSTIRNQAEKCFTKDYMVDQHTSTTPKKRA-ITVPSLASIEEMRTPAFENLQVENISDNNRSKL-GHHESKIPQLLHM 1038 (1051)
Q Consensus 961 ~~~~~I~~~a~~~l~~eY~~~ept~~TP~k~~-~~vPs~~sIe~lRt~~~e~L~~~~~~~~~~~~~-~~~~~~~~~~~~~ 1038 (1051)
++...|+.++++|+.++|++|+|++.||++++ +++||.++|+.+++|+++.+ ++++++.+.++. ..++.+
T Consensus 956 ~~~~~~~~~~~e~~~~~~~~~~p~~~sp~~~s~~~~~s~~~v~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~------- 1027 (1041)
T KOG0243|consen 956 HKDRDIENNSGETSLDDYVVDEPSTSSPTKLSRINIPSIGSVESLTTPFSEGT-LRESRLNNELEVFKTGEIK------- 1027 (1041)
T ss_pred chhhhhhhccccccchhhcccccCCCCccccccCCCCCcccccccccCccccc-ccccccccchhhhcccccc-------
Confidence 99999999999999999999999999999999 89999999999999999999 999999888622 222222
Q ss_pred CCCCCCCCCCCCC
Q 001572 1039 AASPNRTPFSDVN 1051 (1051)
Q Consensus 1039 ~~~~~r~p~~~~n 1051 (1051)
.....|.||.++|
T Consensus 1028 ~~~~~r~~~~~~n 1040 (1041)
T KOG0243|consen 1028 GVSNGRPPLSAQN 1040 (1041)
T ss_pred CCCCCCCchhhcc
Confidence 4778999999987
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-91 Score=813.67 Aligned_cols=365 Identities=46% Similarity=0.688 Sum_probs=337.6
Q ss_pred CCCceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEeccC-CCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhh
Q 001572 49 KEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVA-NKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVL 127 (1051)
Q Consensus 49 ~~~nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~-~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl 127 (1051)
...+|+|+|||||++..+...+...++.+++....+.+..+.. ....+++|+||.||+++++|.+||..++.|+|++||
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl 82 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVL 82 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHh
Confidence 3468999999999999999999999999988777666654433 345578899999999999999999999999999999
Q ss_pred cCCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhc--ccCcccEEEEEEEEccccccccccC
Q 001572 128 DGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQ--NADYSMKVSFLELYNEDITDLLAQE 205 (1051)
Q Consensus 128 ~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~--~~~~sV~vS~lEIYnE~v~DLL~~~ 205 (1051)
+||||||||||||||||||||+|. .+...|||||++.+||..|... ...|.|+|||+|||||.|+|||++.
T Consensus 83 ~GyNgtvFaYGQTGsGKTyTM~G~-------~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~ 155 (574)
T KOG4280|consen 83 EGYNGTVFAYGQTGSGKTYTMIGP-------DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPV 155 (574)
T ss_pred cccCceEEEeccCCCCCceEeeCC-------ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCcc
Confidence 999999999999999999999997 1678999999999999999875 3369999999999999999999987
Q ss_pred CCCCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEeccc
Q 001572 206 DHSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAV 285 (1051)
Q Consensus 206 ~~~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~ 285 (1051)
+ ++.+.|+++++.||||+||+++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|+......
T Consensus 156 ~---------~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~ 226 (574)
T KOG4280|consen 156 N---------PKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSD 226 (574)
T ss_pred C---------cCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccC
Confidence 5 3679999999999999999999999999999999999999999999999999999999999999865556
Q ss_pred CCcceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhCCC-CCcCCCCchhhhhhhccCCCcc
Q 001572 286 GDEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSA-HIPYRDSKLTRLLRDSLGGKTK 364 (1051)
Q Consensus 286 ~~~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~~~-hIPYRdSKLTrLLqdSLGGnsk 364 (1051)
++...++.|||||||||||||..++|+.|.|++||.+||+||++||+||.+|+++.. ||||||||||+|||||||||||
T Consensus 227 ~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~k 306 (574)
T KOG4280|consen 227 GGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSK 306 (574)
T ss_pred CCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCce
Confidence 667778899999999999999999999999999999999999999999999999876 9999999999999999999999
Q ss_pred eeEEeecCCCCCChHhhHHHHHHHHHhhhcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001572 365 TCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQKMSKAVLLKDLYLEIERMKEDVRAARDK 430 (1051)
Q Consensus 365 T~mIatISPs~~~~eETLsTL~fA~RAk~Iknkp~vN~~~~k~~lik~l~~EI~~Lk~eL~~~r~~ 430 (1051)
|+|||||||+..+++||++||+||+|||.|+|+|.+|+++ +.+.++.|+.+|.+||.+|......
T Consensus 307 T~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~-~~~~~~~lq~ei~~Lk~~l~~~~~~ 371 (574)
T KOG4280|consen 307 TTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDP-KDALLRELQEEIERLKKELDPGGSP 371 (574)
T ss_pred EEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCc-chhhHHHHHHHHHHHHHhhccccCc
Confidence 9999999999999999999999999999999999999985 5788999999999999999866554
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-90 Score=815.31 Aligned_cols=402 Identities=37% Similarity=0.554 Sum_probs=345.6
Q ss_pred CCCceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEeccCCCCcCeeEecCcccCCC-------cchhhhhhhhhhh
Q 001572 49 KEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPK-------AQQRSIYDQAIVP 121 (1051)
Q Consensus 49 ~~~nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~~~~~~k~F~FD~VF~~~-------asQ~~Vy~~~v~p 121 (1051)
.+.+|+|+||||||+.+|....+.+||.+.++..+++ .+...+. ...|+||++|+.. ++|..||+..+.|
T Consensus 2 ~~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii--~~~~~k~-~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~ 78 (1221)
T KOG0245|consen 2 EGSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTII--NPKGSKD-APKFTFDYSYWSHDSEDPHFASQKQVYEDLGRE 78 (1221)
T ss_pred CCCceEEEEEeccchhhhhhcccceEEEecCCceeee--cCCCccc-CCceecceeeecCCCCCCchhhHHHHHHHHhHH
Confidence 3568999999999999999999999999988765444 3332232 3459999999654 6899999999999
Q ss_pred HHHHhhcCCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhc---ccCcccEEEEEEEEcccc
Q 001572 122 IVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQ---NADYSMKVSFLELYNEDI 198 (1051)
Q Consensus 122 lV~~vl~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~---~~~~sV~vS~lEIYnE~v 198 (1051)
+++.+++|||+||||||||||||||||+|-. .++++|||||+|++||.++... +..|+|.|||+|||||+|
T Consensus 79 mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~------~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErV 152 (1221)
T KOG0245|consen 79 MLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQ------EPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERV 152 (1221)
T ss_pred HHHHHhcccceEEEEeccCCCCcceeeeccC------CCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHH
Confidence 9999999999999999999999999999964 3678999999999999999753 458999999999999999
Q ss_pred ccccccCCCCCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEE
Q 001572 199 TDLLAQEDHSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITV 278 (1051)
Q Consensus 199 ~DLL~~~~~~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v 278 (1051)
+|||+.. ..+.+|+++|++.-|+||.+|+.+.|.|+.|+..+|+.|++.|++++|.||+.|||||+||+|++
T Consensus 153 rDLL~~p--------~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvf 224 (1221)
T KOG0245|consen 153 RDLLNAP--------KSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVF 224 (1221)
T ss_pred HHHhhCC--------CCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEE
Confidence 9999831 13678999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccCC-cceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhCC-------CCCcCCCCc
Q 001572 279 HIKEAAVGD-EELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHS-------AHIPYRDSK 350 (1051)
Q Consensus 279 ~~~~~~~~~-~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~~-------~hIPYRdSK 350 (1051)
.++.....+ -+..+.|||+|||||||||++.+|+.|.|++||.+||+||+|||+||+||++.+ .+||||||.
T Consensus 225 tQk~~~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSV 304 (1221)
T KOG0245|consen 225 TQKKHDQDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSV 304 (1221)
T ss_pred EeeeccccCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHH
Confidence 988766543 456789999999999999999999999999999999999999999999999743 489999999
Q ss_pred hhhhhhhccCCCcceeEEeecCCCCCChHhhHHHHHHHHHhhhcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001572 351 LTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQKMSKAVLLKDLYLEIERMKEDVRAARDK 430 (1051)
Q Consensus 351 LTrLLqdSLGGnskT~mIatISPs~~~~eETLsTL~fA~RAk~Iknkp~vN~~~~k~~lik~l~~EI~~Lk~eL~~~r~~ 430 (1051)
||+||+++||||+||.|||+|||++.||+|||||||||.|||+|+|+|+||+++ .+.+|++|++||.+||..|.+...
T Consensus 305 LTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdp-naKLIRELreEv~rLksll~~~~~- 382 (1221)
T KOG0245|consen 305 LTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDP-NAKLIRELREEVARLKSLLRAQGL- 382 (1221)
T ss_pred HHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCc-cHHHHHHHHHHHHHHHHHHhcccc-
Confidence 999999999999999999999999999999999999999999999999999994 678999999999999998764322
Q ss_pred CCCCC-ChhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001572 431 NGVYV-PHERYAQEEAEKKARIEKIEQLENDLNLSEKEVDRFRELYL 476 (1051)
Q Consensus 431 ~g~~~-~~e~~~~~e~e~~~~~~~i~~le~~l~~~~~el~~l~~~~~ 476 (1051)
|... ....... .....++.+..+|...++++.++.+.|.
T Consensus 383 -~~~~~~~~p~~~------~~~~~~e~~~~~L~E~Ek~mael~etW~ 422 (1221)
T KOG0245|consen 383 -GDIAVEGSPSAL------LSQPEIEELRERLQETEKIMAELNETWE 422 (1221)
T ss_pred -ccccccCCcccc------cccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 0000000 1123455555666667777777776664
No 4
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.6e-84 Score=736.99 Aligned_cols=350 Identities=43% Similarity=0.638 Sum_probs=315.8
Q ss_pred CCCceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEeccCCCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhhc
Q 001572 49 KEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLD 128 (1051)
Q Consensus 49 ~~~nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~ 128 (1051)
..++|+|+||+||++..|...+.+.+....+....|.+-. ++.. ++|.||+||.|+++|.+||+.++.|+|++||.
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~---~~~~-~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~ 80 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLET---TKET-KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLL 80 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEec---cccc-ccceeeeecCCCccHHHHHHHHHHHHHHHHhc
Confidence 5679999999999999999888877655544222332211 2233 89999999999999999999999999999999
Q ss_pred CCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhcc--cCcccEEEEEEEEccccccccccCC
Q 001572 129 GFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQN--ADYSMKVSFLELYNEDITDLLAQED 206 (1051)
Q Consensus 129 G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~~--~~~sV~vS~lEIYnE~v~DLL~~~~ 206 (1051)
|||+||||||||||||||||.|... .+...|||||++++||++|.... .+|.|+|||||||+|+++|||+|.
T Consensus 81 GYNGTvfaYGqT~sGKTytm~G~~~-----d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~- 154 (607)
T KOG0240|consen 81 GYNGTVFAYGQTGSGKTYTMEGIGH-----DPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE- 154 (607)
T ss_pred ccceeEEEecCCCCCcceeecccCC-----ChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc-
Confidence 9999999999999999999999643 35677999999999999998754 489999999999999999999865
Q ss_pred CCCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEecccC
Q 001572 207 HSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVG 286 (1051)
Q Consensus 207 ~~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~~ 286 (1051)
+.++.+.+|.+++++|+|+++..|.++++++..++.|..+|+++.|.||.+|||||+||+|+|.+......
T Consensus 155 ---------k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~ 225 (607)
T KOG0240|consen 155 ---------KTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDK 225 (607)
T ss_pred ---------cCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccch
Confidence 46899999999999999999999999999999999999999999999999999999999999987655432
Q ss_pred CcceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhC-CCCCcCCCCchhhhhhhccCCCcce
Q 001572 287 DEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEH-SAHIPYRDSKLTRLLRDSLGGKTKT 365 (1051)
Q Consensus 287 ~~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~-~~hIPYRdSKLTrLLqdSLGGnskT 365 (1051)
..++|||.||||||||+++++|+.|.-+.||.+||+||.|||+||+||+++ ..||||||||||||||||||||++|
T Consensus 226 ---~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRT 302 (607)
T KOG0240|consen 226 ---RKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRT 302 (607)
T ss_pred ---hhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcce
Confidence 357899999999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred eEEeecCCCCCChHhhHHHHHHHHHhhhcccccccccccCHHHHHHHHHHHHHHH
Q 001572 366 CIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQKMSKAVLLKDLYLEIERM 420 (1051)
Q Consensus 366 ~mIatISPs~~~~eETLsTL~fA~RAk~Iknkp~vN~~~~k~~lik~l~~EI~~L 420 (1051)
.||+|+||+..+..||.+||+|+.|||.|+|.+.+|...+-+.+.+.|..+-+.+
T Consensus 303 tlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd~~ 357 (607)
T KOG0240|consen 303 TLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKDKN 357 (607)
T ss_pred EEEEecCCccccccccccchhhccccccccchhhhhhHhhHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999988888888776544433
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.6e-84 Score=787.72 Aligned_cols=366 Identities=41% Similarity=0.618 Sum_probs=310.4
Q ss_pred CCCceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEeccCCCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhhc
Q 001572 49 KEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLD 128 (1051)
Q Consensus 49 ~~~nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~ 128 (1051)
...+|+|||||||+++.|. +...++.+.++ .+.+. .+.|+||+||+++++|.+||+.++.|+|+.+++
T Consensus 96 ~ds~VkV~VRVRPl~~~E~--g~~iV~~~s~d--sl~I~--------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLd 163 (1320)
T PLN03188 96 SDSGVKVIVRMKPLNKGEE--GEMIVQKMSND--SLTIN--------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLA 163 (1320)
T ss_pred CCCCeEEEEEcCCCCCccC--CCeeEEEcCCC--eEEEe--------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3579999999999998863 33334444332 34331 368999999999999999999999999999999
Q ss_pred CCCceeeeccCCCCCccceeccCCCCC--CCCCCCCCcchhHHHHHHHHHHhhc-------ccCcccEEEEEEEEccccc
Q 001572 129 GFNCTVFAYGQTGTGKTYTMEGGMRNK--GGDLPAEAGVIPRAVRQIFDTLEAQ-------NADYSMKVSFLELYNEDIT 199 (1051)
Q Consensus 129 G~N~TIfAYGqTGSGKTyTM~G~~~~~--~~~~~~~~GIIpRal~~LF~~le~~-------~~~~sV~vS~lEIYnE~v~ 199 (1051)
|||+||||||||||||||||+|+.... ......++|||||++++||..+... +..|.|+|||+|||||+|+
T Consensus 164 GyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~ 243 (1320)
T PLN03188 164 GFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQIT 243 (1320)
T ss_pred CCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcce
Confidence 999999999999999999999964321 1112457899999999999998642 3479999999999999999
Q ss_pred cccccCCCCCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEE
Q 001572 200 DLLAQEDHSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVH 279 (1051)
Q Consensus 200 DLL~~~~~~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~ 279 (1051)
|||++.. +.+.|++|+++|++|.||+++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.
T Consensus 244 DLLsp~~----------k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ve 313 (1320)
T PLN03188 244 DLLDPSQ----------KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVE 313 (1320)
T ss_pred ecccccc----------CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEE
Confidence 9998642 468999999999999999999999999999999999999999999999999999999999998
Q ss_pred EEecc-cCCcceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhh-----CCCCCcCCCCchhh
Q 001572 280 IKEAA-VGDEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVE-----HSAHIPYRDSKLTR 353 (1051)
Q Consensus 280 ~~~~~-~~~~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~-----~~~hIPYRdSKLTr 353 (1051)
..... .++...++.|+|+|||||||||..++|+.|.+++|++.||+||++||+||++|++ +..||||||||||+
T Consensus 314 s~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTr 393 (1320)
T PLN03188 314 SRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTF 393 (1320)
T ss_pred EeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHH
Confidence 65432 2344456789999999999999999999999999999999999999999999986 34799999999999
Q ss_pred hhhhccCCCcceeEEeecCCCCCChHhhHHHHHHHHHhhhcccccccccccCHH-----HHHHHHHHHHHHHHHHHHHHH
Q 001572 354 LLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQKMSKA-----VLLKDLYLEIERMKEDVRAAR 428 (1051)
Q Consensus 354 LLqdSLGGnskT~mIatISPs~~~~eETLsTL~fA~RAk~Iknkp~vN~~~~k~-----~lik~l~~EI~~Lk~eL~~~r 428 (1051)
||||+||||++|+|||||||+..+++||++||+||.|||+|+|+|.+|..+.+. .+|++|+.||.+||.+.....
T Consensus 394 LLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~~~p~ 473 (1320)
T PLN03188 394 LLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANGNNPT 473 (1320)
T ss_pred HHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999999876443 244555555555555543333
Q ss_pred hhCCCCCC
Q 001572 429 DKNGVYVP 436 (1051)
Q Consensus 429 ~~~g~~~~ 436 (1051)
.++|.|..
T Consensus 474 ~~n~~y~t 481 (1320)
T PLN03188 474 NPNVAYST 481 (1320)
T ss_pred CCCccccc
Confidence 34466554
No 6
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-80 Score=748.89 Aligned_cols=361 Identities=44% Similarity=0.708 Sum_probs=323.5
Q ss_pred CCCceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEe-ccCCCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhh
Q 001572 49 KEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQ-SVANKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVL 127 (1051)
Q Consensus 49 ~~~nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~-~~~~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl 127 (1051)
....|.|+||+||+++.|...+..+.+.|..+...+.... .......+..|.||+||+++++|++||+..++|+|..|+
T Consensus 4 ~~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l 83 (675)
T KOG0242|consen 4 TEEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVL 83 (675)
T ss_pred ccceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHh
Confidence 4568999999999999876656666666665543222211 111111258899999999999999999999999999999
Q ss_pred cCCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhc-ccCcccEEEEEEEEccccccccccCC
Q 001572 128 DGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQ-NADYSMKVSFLELYNEDITDLLAQED 206 (1051)
Q Consensus 128 ~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~-~~~~sV~vS~lEIYnE~v~DLL~~~~ 206 (1051)
.||||||||||||||||||||.|. +.+|||||+++.+||+.|... +.+|.|+|||+|||||.|+|||++..
T Consensus 84 ~G~N~TVFAYG~TgSGKTyTM~G~--------~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~ 155 (675)
T KOG0242|consen 84 EGFNATVFAYGQTGSGKTYTMSGS--------EDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDG 155 (675)
T ss_pred cCcccceeeecCCCCCCceEEecc--------CCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCC
Confidence 999999999999999999999997 456999999999999999764 45899999999999999999998764
Q ss_pred CCCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEecccC
Q 001572 207 HSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVG 286 (1051)
Q Consensus 207 ~~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~~ 286 (1051)
.++.|+||+.+|++|.||++..|.|++++..+|..|..+|+++.|.+|..|||||+||+|+|........
T Consensus 156 ----------~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~ 225 (675)
T KOG0242|consen 156 ----------GDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS 225 (675)
T ss_pred ----------CCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc
Confidence 3599999999999999999999999999999999999999999999999999999999999987765543
Q ss_pred CcceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhC--CCCCcCCCCchhhhhhhccCCCcc
Q 001572 287 DEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEH--SAHIPYRDSKLTRLLRDSLGGKTK 364 (1051)
Q Consensus 287 ~~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~--~~hIPYRdSKLTrLLqdSLGGnsk 364 (1051)
. ..++|+|||||||||..++++.|.|++||.+||+||++||+||++|+++ ..||||||||||||||++||||++
T Consensus 226 ---~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~r 301 (675)
T KOG0242|consen 226 ---S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNAR 301 (675)
T ss_pred ---c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCcc
Confidence 1 6799999999999999999999999999999999999999999999986 568999999999999999999999
Q ss_pred eeEEeecCCCCCChHhhHHHHHHHHHhhhcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 001572 365 TCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQKMSKAVLLKDLYLEIERMKEDVRAARDKN 431 (1051)
Q Consensus 365 T~mIatISPs~~~~eETLsTL~fA~RAk~Iknkp~vN~~~~k~~lik~l~~EI~~Lk~eL~~~r~~~ 431 (1051)
|+|||||+|+..+++||.+||.||+|||+|++++.+|..+....+++.++.+|..|+.++...+.+.
T Consensus 302 t~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~ 368 (675)
T KOG0242|consen 302 TAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKL 368 (675)
T ss_pred EEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999888999888999999999998766544
No 7
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=3e-79 Score=695.74 Aligned_cols=347 Identities=63% Similarity=0.964 Sum_probs=320.5
Q ss_pred CCceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEeccCCCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhhcC
Q 001572 50 EVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDG 129 (1051)
Q Consensus 50 ~~nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G 129 (1051)
+.||+|+|||||+...|...+...++.+.++...|.+..........+.|.||+||+++++|++||+.++.|+|+.+++|
T Consensus 1 ~~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 1 ESNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 35999999999999999988899999998887778776544334457899999999999999999999999999999999
Q ss_pred CCceeeeccCCCCCccceeccCCCCCCC---CCCCCCcchhHHHHHHHHHHhhcccCcccEEEEEEEEccccccccccCC
Q 001572 130 FNCTVFAYGQTGTGKTYTMEGGMRNKGG---DLPAEAGVIPRAVRQIFDTLEAQNADYSMKVSFLELYNEDITDLLAQED 206 (1051)
Q Consensus 130 ~N~TIfAYGqTGSGKTyTM~G~~~~~~~---~~~~~~GIIpRal~~LF~~le~~~~~~sV~vS~lEIYnE~v~DLL~~~~ 206 (1051)
||+||||||||||||||||+|+.....+ ..+..+|||||++.+||+.++..+..|.|+|||+|||||+|+|||++..
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~ 160 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLSSES 160 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCcc
Confidence 9999999999999999999997544221 2356799999999999999998888999999999999999999998754
Q ss_pred CCCcccccCCCceeeeec--CCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEecc
Q 001572 207 HSKSTEDKQKKPISLMED--GKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAA 284 (1051)
Q Consensus 207 ~~~~~~~~~~~~l~i~Ed--~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~ 284 (1051)
...+++.++++ ..++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+....
T Consensus 161 -------~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~ 233 (352)
T cd01364 161 -------DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETT 233 (352)
T ss_pred -------ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccC
Confidence 12467999999 689999999999999999999999999999999999999999999999999999988877
Q ss_pred cCCcceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCcCCCCchhhhhhhccCCCcc
Q 001572 285 VGDEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSAHIPYRDSKLTRLLRDSLGGKTK 364 (1051)
Q Consensus 285 ~~~~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLTrLLqdSLGGnsk 364 (1051)
..++..+..|+|+||||||||+..++++.+.+.+|+..||+||++|++||.+|+.+..|||||+||||+||+|+||||++
T Consensus 234 ~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~ 313 (352)
T cd01364 234 ISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTK 313 (352)
T ss_pred CCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCce
Confidence 77777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecCCCCCChHhhHHHHHHHHHhhhcccccccccc
Q 001572 365 TCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQK 403 (1051)
Q Consensus 365 T~mIatISPs~~~~eETLsTL~fA~RAk~Iknkp~vN~~ 403 (1051)
|+||+||||+..+++||++||+||.||++|+|+|.+|++
T Consensus 314 t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 314 TSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 999999999999999999999999999999999999974
No 8
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.6e-79 Score=694.18 Aligned_cols=323 Identities=43% Similarity=0.716 Sum_probs=295.9
Q ss_pred ceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEeccC----------CCCcCeeEecCcccCCCcchhhhhhhhhhh
Q 001572 52 NVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVA----------NKQIDRVFTFDKVFGPKAQQRSIYDQAIVP 121 (1051)
Q Consensus 52 nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~----------~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~p 121 (1051)
+|+|+|||||+++.|...+...+|.+.++. .+ +..+.. ....++.|+||+||+++++|.+||+.++.|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~v-~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~p 78 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDR-ML-VFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKP 78 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCC-EE-EEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHH
Confidence 699999999999999988999999887653 33 222221 123468999999999999999999999999
Q ss_pred HHHHhhcCCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhc--ccCcccEEEEEEEEccccc
Q 001572 122 IVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQ--NADYSMKVSFLELYNEDIT 199 (1051)
Q Consensus 122 lV~~vl~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~--~~~~sV~vS~lEIYnE~v~ 199 (1051)
+|+.+++|||+||||||||||||||||+|+. .++|||||++++||+.++.. +..|.|+|||+|||||+|+
T Consensus 79 lv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~--------~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~ 150 (338)
T cd01370 79 LVDGVLNGYNATVFAYGATGAGKTHTMLGTD--------SDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIR 150 (338)
T ss_pred HHHHHHCCCCceEEeeCCCCCCCeEEEcCCC--------CCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEE
Confidence 9999999999999999999999999999973 56899999999999999765 4689999999999999999
Q ss_pred cccccCCCCCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEE
Q 001572 200 DLLAQEDHSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVH 279 (1051)
Q Consensus 200 DLL~~~~~~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~ 279 (1051)
|||++. .+++.+++|+.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.
T Consensus 151 DLL~~~----------~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~ 220 (338)
T cd01370 151 DLLSPS----------SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVR 220 (338)
T ss_pred ECCCCC----------CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEE
Confidence 999864 3579999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCcceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhCC---CCCcCCCCchhhhhh
Q 001572 280 IKEAAVGDEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHS---AHIPYRDSKLTRLLR 356 (1051)
Q Consensus 280 ~~~~~~~~~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~~---~hIPYRdSKLTrLLq 356 (1051)
......+.......|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+.+. .||||||||||+||+
T Consensus 221 ~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~ 300 (338)
T cd01370 221 QKDRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLK 300 (338)
T ss_pred EEecCCCCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHH
Confidence 87765433445678999999999999999999999999999999999999999999999987 899999999999999
Q ss_pred hccCCCcceeEEeecCCCCCChHhhHHHHHHHHHhhhc
Q 001572 357 DSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNI 394 (1051)
Q Consensus 357 dSLGGnskT~mIatISPs~~~~eETLsTL~fA~RAk~I 394 (1051)
|+||||++|+||+||||+..+++||++||+||.|||+|
T Consensus 301 d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 301 DSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred HhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999987
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=3e-79 Score=691.79 Aligned_cols=326 Identities=44% Similarity=0.640 Sum_probs=290.7
Q ss_pred ceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEeccCCCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCC
Q 001572 52 NVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFN 131 (1051)
Q Consensus 52 nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N 131 (1051)
+|+|+|||||++..|...+...++...++.. +.+.. .+.+.|.||+||+++++|++||+.++.|+|+.+++|||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~-~~~~~-----~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n 75 (337)
T cd01373 2 AVKVVVRIRPPNEIEADGGQGQCLKKLSSDT-LVWHS-----HPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYN 75 (337)
T ss_pred CeEEEEEcCcCChhhcccCCCeEEEEcCCCc-EEeeC-----CCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 7999999999999998777777777665432 33221 12689999999999999999999999999999999999
Q ss_pred ceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhc------ccCcccEEEEEEEEccccccccccC
Q 001572 132 CTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQ------NADYSMKVSFLELYNEDITDLLAQE 205 (1051)
Q Consensus 132 ~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~------~~~~sV~vS~lEIYnE~v~DLL~~~ 205 (1051)
+||||||||||||||||+|+...........+|||||++++||..+... +..|.|+|||+|||||+|+|||++.
T Consensus 76 ~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~ 155 (337)
T cd01373 76 GSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPT 155 (337)
T ss_pred eeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCC
Confidence 9999999999999999999754332233467899999999999988643 3478999999999999999999764
Q ss_pred CCCCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEeccc
Q 001572 206 DHSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAV 285 (1051)
Q Consensus 206 ~~~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~ 285 (1051)
. ..+.+++++.++++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|+|.......
T Consensus 156 ~----------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~ 225 (337)
T cd01373 156 S----------RNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKA 225 (337)
T ss_pred C----------CCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCC
Confidence 2 468999999999999999999999999999999999999999999999999999999999998665433
Q ss_pred CCcceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhh----CCCCCcCCCCchhhhhhhccCC
Q 001572 286 GDEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVE----HSAHIPYRDSKLTRLLRDSLGG 361 (1051)
Q Consensus 286 ~~~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~----~~~hIPYRdSKLTrLLqdSLGG 361 (1051)
. ....+.|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|++ +..|||||+||||+||||+|||
T Consensus 226 ~-~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLgg 304 (337)
T cd01373 226 S-STNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGG 304 (337)
T ss_pred C-CCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCC
Confidence 2 2245779999999999999999999999999999999999999999999986 3589999999999999999999
Q ss_pred CcceeEEeecCCCCCChHhhHHHHHHHHHhhhc
Q 001572 362 KTKTCIIATISPSAHSLEETMSTLDYAYRAKNI 394 (1051)
Q Consensus 362 nskT~mIatISPs~~~~eETLsTL~fA~RAk~I 394 (1051)
|++|+|||||||+..+++||++||+||.|||+|
T Consensus 305 ns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 305 NAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999987
No 10
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-78 Score=702.91 Aligned_cols=360 Identities=37% Similarity=0.600 Sum_probs=323.8
Q ss_pred CCceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEec---cCCCCcCeeEecCcccCCC-------cchhhhhhhhh
Q 001572 50 EVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQS---VANKQIDRVFTFDKVFGPK-------AQQRSIYDQAI 119 (1051)
Q Consensus 50 ~~nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~---~~~~~~~k~F~FD~VF~~~-------asQ~~Vy~~~v 119 (1051)
..+|+|+|||||++.+|......++|.++.....+....+ ......+|+|.||++|++. +.|+.||..++
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 4689999999999999999999999999876544333211 1122457999999999764 67999999999
Q ss_pred hhHHHHhhcCCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhc---ccCcccEEEEEEEEcc
Q 001572 120 VPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQ---NADYSMKVSFLELYNE 196 (1051)
Q Consensus 120 ~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~---~~~~sV~vS~lEIYnE 196 (1051)
..+|+.+|+|||+||||||||||||||||+|. .+.+|||||.+..||..|... +..|.|.|||+|||||
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt--------~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynE 154 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGT--------AEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNE 154 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeecc--------CCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhc
Confidence 99999999999999999999999999999997 467899999999999999764 3479999999999999
Q ss_pred ccccccccCCCCCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEE
Q 001572 197 DITDLLAQEDHSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSI 276 (1051)
Q Consensus 197 ~v~DLL~~~~~~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI 276 (1051)
+++|||.|..+ +..+.++++.--|++|.||++..|.|++|+-.+|..|.+.|++++|.||..|||||+||.|
T Consensus 155 kv~DLLdPk~s--------sqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFsl 226 (1714)
T KOG0241|consen 155 KVRDLLDPKGS--------SQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSL 226 (1714)
T ss_pred chhhhhCCCCC--------cceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEE
Confidence 99999998753 4679999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccc-CCcceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhC------CCCCcCCCC
Q 001572 277 TVHIKEAAV-GDEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEH------SAHIPYRDS 349 (1051)
Q Consensus 277 ~v~~~~~~~-~~~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~------~~hIPYRdS 349 (1051)
.|.+.-.+. .|...-+.|||.|||||||||.+++|+.|.|++|+++||+||.+||.||.||++. ..+||||||
T Consensus 227 vvtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDS 306 (1714)
T KOG0241|consen 227 VVTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDS 306 (1714)
T ss_pred EEeeEEeccccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhH
Confidence 998764443 2233347899999999999999999999999999999999999999999999973 358999999
Q ss_pred chhhhhhhccCCCcceeEEeecCCCCCChHhhHHHHHHHHHhhhcccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 001572 350 KLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQKMSKAVLLKDLYLEIERMKEDVRA 426 (1051)
Q Consensus 350 KLTrLLqdSLGGnskT~mIatISPs~~~~eETLsTL~fA~RAk~Iknkp~vN~~~~k~~lik~l~~EI~~Lk~eL~~ 426 (1051)
.||+||+|+|||||+|+||+||||+.++|+|||||||||.|||.|+|.+.+|.+ +....+++++.|++.|+.+|..
T Consensus 307 VLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNed-pnarvirElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 307 VLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNED-PNARVIRELREEVEKLREQLEQ 382 (1714)
T ss_pred HHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCC-chHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999998 4667899999999999998865
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.6e-77 Score=679.65 Aligned_cols=324 Identities=39% Similarity=0.649 Sum_probs=292.4
Q ss_pred ceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEeccC---------CCCcCeeEecCcccCCCcchhhhhhhhhhhH
Q 001572 52 NVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVA---------NKQIDRVFTFDKVFGPKAQQRSIYDQAIVPI 122 (1051)
Q Consensus 52 nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~---------~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~pl 122 (1051)
+|+|+|||||+++.|...+...+|.+.++ ..+.+..+.. ....++.|.||+||+++++|++||+.++.|+
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINS-TTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCC-CEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 79999999999999988778888887654 3555543322 1335689999999999999999999999999
Q ss_pred HHHhhcCCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhcccCcccEEEEEEEEcccccccc
Q 001572 123 VNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQNADYSMKVSFLELYNEDITDLL 202 (1051)
Q Consensus 123 V~~vl~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~~~~~sV~vS~lEIYnE~v~DLL 202 (1051)
|+.+++||||||||||||||||||||+|+. .++|||||++++||+.+.. |.|+|||+|||||+|+|||
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~--------~~~Gli~r~~~~lF~~~~~----~~v~~S~~EIyne~v~DLL 148 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSP--------GDGGILPRSLDVIFNSIGG----YSVFVSYVEIYNNYIYDLL 148 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCC--------CCCchHHHHHHHHHHHHHh----eeEEEEEEEEeCCEeEeCC
Confidence 999999999999999999999999999973 5789999999999999865 9999999999999999999
Q ss_pred ccCCCCCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEe
Q 001572 203 AQEDHSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKE 282 (1051)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~ 282 (1051)
++.... ...++++.+++|++++++|.|++++.|.|++|++++|..|..+|.+++|.+|..|||||+||+|+|....
T Consensus 149 ~~~~~~----~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~ 224 (345)
T cd01368 149 EDSPSS----TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAP 224 (345)
T ss_pred CCcccc----ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEec
Confidence 876532 1234679999999999999999999999999999999999999999999999999999999999998766
Q ss_pred cccCC-----cceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhh------CCCCCcCCCCch
Q 001572 283 AAVGD-----EELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVE------HSAHIPYRDSKL 351 (1051)
Q Consensus 283 ~~~~~-----~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~------~~~hIPYRdSKL 351 (1051)
....+ ...+..|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|++ +..|||||||||
T Consensus 225 ~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkL 304 (345)
T cd01368 225 GDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKL 304 (345)
T ss_pred cCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHH
Confidence 54322 2456789999999999999999999999999999999999999999999997 468999999999
Q ss_pred hhhhhhccCCCcceeEEeecCCCCCChHhhHHHHHHHHHhh
Q 001572 352 TRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAK 392 (1051)
Q Consensus 352 TrLLqdSLGGnskT~mIatISPs~~~~eETLsTL~fA~RAk 392 (1051)
||||||+||||++|+||+||||+..+++||++||+||.+|+
T Consensus 305 T~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 305 THLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.9e-76 Score=673.67 Aligned_cols=334 Identities=41% Similarity=0.635 Sum_probs=302.6
Q ss_pred CceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEeccC---CCCcCeeEecCcccCCC-------cchhhhhhhhhh
Q 001572 51 VNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVA---NKQIDRVFTFDKVFGPK-------AQQRSIYDQAIV 120 (1051)
Q Consensus 51 ~nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~---~~~~~k~F~FD~VF~~~-------asQ~~Vy~~~v~ 120 (1051)
.+|+|+|||||++..|...+.+.++.+++ ..+++..+.. .....+.|.||+||++. ++|++||+.++.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~--~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~ 78 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG--KVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGR 78 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC--CEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHH
Confidence 48999999999999999989888888876 4566554332 13346899999999999 999999999999
Q ss_pred hHHHHhhcCCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhc---ccCcccEEEEEEEEccc
Q 001572 121 PIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQ---NADYSMKVSFLELYNED 197 (1051)
Q Consensus 121 plV~~vl~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~---~~~~sV~vS~lEIYnE~ 197 (1051)
|+|+.+++|||+||||||||||||||||+|+. .++|||||++++||+.+... ...|.|+|||+|||||+
T Consensus 79 p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~--------~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~ 150 (356)
T cd01365 79 ELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYK--------EEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEK 150 (356)
T ss_pred HHHHHHhCCCceEEEEecCCCCCCeEEecCCC--------CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCe
Confidence 99999999999999999999999999999973 36899999999999999764 34799999999999999
Q ss_pred cccccccCCCCCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEE
Q 001572 198 ITDLLAQEDHSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSIT 277 (1051)
Q Consensus 198 v~DLL~~~~~~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~ 277 (1051)
|+|||++.. .....+.+++++.++++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+
T Consensus 151 v~DLL~~~~-------~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~ 223 (356)
T cd01365 151 VRDLLNPKK-------KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIV 223 (356)
T ss_pred eeeCCCCCc-------cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEE
Confidence 999998753 1235789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccC-CcceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhC--------CCCCcCCC
Q 001572 278 VHIKEAAVG-DEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEH--------SAHIPYRD 348 (1051)
Q Consensus 278 v~~~~~~~~-~~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~--------~~hIPYRd 348 (1051)
|.+...... .......|+|+||||||||+..+++..+.+++|+..||+||++|++||.+|+.. ..|||||+
T Consensus 224 v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~ 303 (356)
T cd01365 224 LTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRD 303 (356)
T ss_pred EEEEecccCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcC
Confidence 987665432 234557899999999999999999999999999999999999999999999874 48999999
Q ss_pred CchhhhhhhccCCCcceeEEeecCCCCCChHhhHHHHHHHHHhhhcccccccc
Q 001572 349 SKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEAN 401 (1051)
Q Consensus 349 SKLTrLLqdSLGGnskT~mIatISPs~~~~eETLsTL~fA~RAk~Iknkp~vN 401 (1051)
||||+||+|+|||+++|+||+||||...+++||++||+||.|+++|+|.|.+|
T Consensus 304 SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 304 SVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred cHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 99999999999999999999999999999999999999999999999999886
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=6.5e-76 Score=663.77 Aligned_cols=330 Identities=46% Similarity=0.749 Sum_probs=304.0
Q ss_pred CceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEeccC-CCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhhcC
Q 001572 51 VNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVA-NKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDG 129 (1051)
Q Consensus 51 ~nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~-~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G 129 (1051)
.||+|+|||||+++.|...+...++.++++...+.+..+.. .....+.|.||+||+++++|.+||+.++.|+|+.+++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 48999999999999999988888999988877787765432 23457899999999999999999999999999999999
Q ss_pred CCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhcc-cCcccEEEEEEEEccccccccccCCCC
Q 001572 130 FNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQN-ADYSMKVSFLELYNEDITDLLAQEDHS 208 (1051)
Q Consensus 130 ~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~~-~~~sV~vS~lEIYnE~v~DLL~~~~~~ 208 (1051)
||+||||||||||||||||+|+.. .+..+|||||++++||+.+.... ..|.|+|||+|||||+|+|||++..
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~-----~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~-- 153 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVRE-----PPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQ-- 153 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCC-----cccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCC--
Confidence 999999999999999999999743 24689999999999999987643 6899999999999999999998653
Q ss_pred CcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEecccCCc
Q 001572 209 KSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGDE 288 (1051)
Q Consensus 209 ~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~~~~ 288 (1051)
.+++.+++++.++++|.|++++.|.|++|+..+|..|.++|.++.|.+|..|||||+||+|+|........+.
T Consensus 154 -------~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~ 226 (333)
T cd01371 154 -------KKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGE 226 (333)
T ss_pred -------CCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCC
Confidence 3578999999999999999999999999999999999999999999999999999999999998877655456
Q ss_pred ceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhCCC-CCcCCCCchhhhhhhccCCCcceeE
Q 001572 289 ELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSA-HIPYRDSKLTRLLRDSLGGKTKTCI 367 (1051)
Q Consensus 289 ~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~~~-hIPYRdSKLTrLLqdSLGGnskT~m 367 (1051)
..+..|+|+||||||||+..+.+..+.+++|+..||+||.+|++||.+|+.+.. |||||+||||+||+|+|||+++|+|
T Consensus 227 ~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~ 306 (333)
T cd01371 227 NHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVM 306 (333)
T ss_pred CcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEE
Confidence 677889999999999999999999999999999999999999999999999875 9999999999999999999999999
Q ss_pred EeecCCCCCChHhhHHHHHHHHHhhhc
Q 001572 368 IATISPSAHSLEETMSTLDYAYRAKNI 394 (1051)
Q Consensus 368 IatISPs~~~~eETLsTL~fA~RAk~I 394 (1051)
|+||+|...+++||++||+||.|||+|
T Consensus 307 I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 307 CANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred EEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999987
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=2.5e-75 Score=656.10 Aligned_cols=316 Identities=42% Similarity=0.638 Sum_probs=288.9
Q ss_pred CceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEeccC----C-CCcCeeEecCcccCCCcchhhhhhhhhhhHHHH
Q 001572 51 VNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVA----N-KQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNE 125 (1051)
Q Consensus 51 ~nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~----~-~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~ 125 (1051)
.+|+|+|||||+++.|...+...++.+.++ ..+++..+.. . ....+.|+||+||+++++|++||+.++.|+|+.
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~ 79 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPH 79 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCC-CEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHH
Confidence 489999999999999988888888888775 3555543211 1 112578999999999999999999999999999
Q ss_pred hhcCCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhcccCcccEEEEEEEEccccccccccC
Q 001572 126 VLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQNADYSMKVSFLELYNEDITDLLAQE 205 (1051)
Q Consensus 126 vl~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~~~~~sV~vS~lEIYnE~v~DLL~~~ 205 (1051)
+++|||+||||||||||||||||+|+. .++|||||++++||+.++....+|.|++||+|||||+++|||++.
T Consensus 80 ~~~G~n~~i~ayGqtGSGKTyTm~G~~--------~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~ 151 (322)
T cd01367 80 VFEGGVATCFAYGQTGSGKTYTMLGDE--------NQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLNDR 151 (322)
T ss_pred HhCCCceEEEeccCCCCCCceEecCcC--------CcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccCc
Confidence 999999999999999999999999973 578999999999999998877889999999999999999999862
Q ss_pred CCCCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEeccc
Q 001572 206 DHSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAV 285 (1051)
Q Consensus 206 ~~~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~ 285 (1051)
+++.+++++.++++|.|++++.|.|++|++++|..|..+|.+++|.+|..|||||+||+|.|.....
T Consensus 152 -----------~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-- 218 (322)
T cd01367 152 -----------KRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL-- 218 (322)
T ss_pred -----------cceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC--
Confidence 4689999999999999999999999999999999999999999999999999999999999986654
Q ss_pred CCcceeEeeeeeEeeCCCCcccccCC-CchhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCcCCCCchhhhhhhccCCCcc
Q 001572 286 GDEELIKCGKLNLVDLAGSENISRSG-AREGRAREAGEINKSLLTLGRVINALVEHSAHIPYRDSKLTRLLRDSLGGKTK 364 (1051)
Q Consensus 286 ~~~~~i~~skL~lVDLAGSEr~~ksg-a~~~r~kEa~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLTrLLqdSLGGnsk 364 (1051)
....|+|+||||||||+...++ ..+.+.+|+..||+||++|++||.+|+.+..||||||||||+||||+||||++
T Consensus 219 ----~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~ 294 (322)
T cd01367 219 ----NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSK 294 (322)
T ss_pred ----CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCe
Confidence 2467999999999999998766 46789999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecCCCCCChHhhHHHHHHHHHhh
Q 001572 365 TCIIATISPSAHSLEETMSTLDYAYRAK 392 (1051)
Q Consensus 365 T~mIatISPs~~~~eETLsTL~fA~RAk 392 (1051)
|+||+||||+..+++||++||+||.|+|
T Consensus 295 t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 295 TVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999986
No 15
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.8e-74 Score=648.55 Aligned_cols=315 Identities=38% Similarity=0.608 Sum_probs=285.5
Q ss_pred ceEEEEEeCCCCchhhhcCCCcEEEecCC-c---ceEEEEeccCCCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhh
Q 001572 52 NVQVLLRCRPLSDDEQKSNVPRVISCSED-K---REVTVLQSVANKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVL 127 (1051)
Q Consensus 52 nVkV~vRvRP~~~~E~~~~~~~vv~~~~~-~---~~v~v~~~~~~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl 127 (1051)
||+|+|||||+.+.|.. .+.++...+. . ..+.+.. +.+....+.|.||+||+++++|++||+.++.|+|+.++
T Consensus 1 ~i~V~vRvRP~~~~e~~--~~~~v~~~~~~~~~~~~v~~~~-~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~ 77 (319)
T cd01376 1 NVRVVVRVRPFLDCEED--SSSCVRGIDSDQGQAKSVEIEN-PRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLL 77 (319)
T ss_pred CcEEEEEeCcCCccccC--CCceEEEeCCCCCcceEEEEeC-CCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHh
Confidence 69999999999998843 3445544322 1 3444433 33344578999999999999999999999999999999
Q ss_pred cCCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhcccCcccEEEEEEEEccccccccccCCC
Q 001572 128 DGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQNADYSMKVSFLELYNEDITDLLAQEDH 207 (1051)
Q Consensus 128 ~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~~~~~sV~vS~lEIYnE~v~DLL~~~~~ 207 (1051)
+|||+||||||||||||||||+|+. .++|||||++++||+.++.....|.|++||+|||||+|+|||++.
T Consensus 78 ~G~n~~i~ayG~tgSGKTyTm~G~~--------~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~-- 147 (319)
T cd01376 78 SGQNATVFAYGSTGAGKTHTMLGDP--------NEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPA-- 147 (319)
T ss_pred CCCceEEEEECCCCCCCcEEEeCCc--------CccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCC--
Confidence 9999999999999999999999973 468999999999999998887899999999999999999999864
Q ss_pred CCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEecccCC
Q 001572 208 SKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGD 287 (1051)
Q Consensus 208 ~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~~~ 287 (1051)
...+.|++++.++++|.|++++.|.+++|+..+|..|..+|.+++|.+|..|||||+||+|.|.+....
T Consensus 148 --------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~--- 216 (319)
T cd01376 148 --------KKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN--- 216 (319)
T ss_pred --------CCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC---
Confidence 246889999999999999999999999999999999999999999999999999999999999866432
Q ss_pred cceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCcCCCCchhhhhhhccCCCcceeE
Q 001572 288 EELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSAHIPYRDSKLTRLLRDSLGGKTKTCI 367 (1051)
Q Consensus 288 ~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLTrLLqdSLGGnskT~m 367 (1051)
....|+|+||||||||+..+++..|.+++|+..||+||++||+||.+|+.+..|||||+||||+||+|+||||++|+|
T Consensus 217 --~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~ 294 (319)
T cd01376 217 --IQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIM 294 (319)
T ss_pred --ceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEE
Confidence 256899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCChHhhHHHHHHHHHhh
Q 001572 368 IATISPSAHSLEETMSTLDYAYRAK 392 (1051)
Q Consensus 368 IatISPs~~~~eETLsTL~fA~RAk 392 (1051)
|+||||...+++|||+||+||.|||
T Consensus 295 i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 295 VANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred EEEeCCchhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999996
No 16
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=8.3e-74 Score=648.41 Aligned_cols=329 Identities=45% Similarity=0.749 Sum_probs=298.3
Q ss_pred CceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEeccCCCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCC
Q 001572 51 VNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGF 130 (1051)
Q Consensus 51 ~nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~ 130 (1051)
.+|+|+||+||++..|...+...++.+.+....+++.. .+.|.||+||+++++|++||+.++.|+|+.+++||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~-------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 73 (341)
T cd01372 1 SSVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT-------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGY 73 (341)
T ss_pred CCeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC-------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 37999999999999999888888888877665555421 57999999999999999999999999999999999
Q ss_pred CceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhcc--cCcccEEEEEEEEccccccccccCCCC
Q 001572 131 NCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQN--ADYSMKVSFLELYNEDITDLLAQEDHS 208 (1051)
Q Consensus 131 N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~~--~~~sV~vS~lEIYnE~v~DLL~~~~~~ 208 (1051)
|+||||||||||||||||+|+.... ....++|||||++++||..++... .+|.|.|||+|||||+|+|||++..
T Consensus 74 n~~i~ayG~tgSGKT~Tm~G~~~~~--~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~-- 149 (341)
T cd01372 74 NATVLAYGQTGSGKTYTMGTAFTAS--EDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPST-- 149 (341)
T ss_pred ccceeeecCCCCCCcEEecCCCccc--cccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcc--
Confidence 9999999999999999999974321 235789999999999999998654 4899999999999999999998753
Q ss_pred CcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEeccc---
Q 001572 209 KSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAV--- 285 (1051)
Q Consensus 209 ~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~--- 285 (1051)
....++.+++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|.|.+.....
T Consensus 150 -----~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~ 224 (341)
T cd01372 150 -----SEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIA 224 (341)
T ss_pred -----cCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccc
Confidence 123579999999999999999999999999999999999999999999999999999999999998876531
Q ss_pred ----CCcceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhCC---CCCcCCCCchhhhhhhc
Q 001572 286 ----GDEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHS---AHIPYRDSKLTRLLRDS 358 (1051)
Q Consensus 286 ----~~~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~~---~hIPYRdSKLTrLLqdS 358 (1051)
........|+|+||||||||+..++++.+.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+
T Consensus 225 ~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~ 304 (341)
T cd01372 225 PMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDS 304 (341)
T ss_pred cccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHh
Confidence 12334678999999999999999999999999999999999999999999999876 79999999999999999
Q ss_pred cCCCcceeEEeecCCCCCChHhhHHHHHHHHHhhhcc
Q 001572 359 LGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIK 395 (1051)
Q Consensus 359 LGGnskT~mIatISPs~~~~eETLsTL~fA~RAk~Ik 395 (1051)
|||+++|+||+||||+..+++|||+||+||.|||+||
T Consensus 305 Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 305 LGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred cCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999996
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.8e-73 Score=641.76 Aligned_cols=321 Identities=45% Similarity=0.726 Sum_probs=293.9
Q ss_pred CceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEeccCCCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCC
Q 001572 51 VNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGF 130 (1051)
Q Consensus 51 ~nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~ 130 (1051)
.+|+|+|||||+++.|...+...++.+.++ ..|.+.. ....+.|.||+||+++++|++||+.++.|+|+.+++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~----~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~ 76 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAG----SDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGY 76 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC-CEEEecC----CCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 489999999999999987888888888765 4555543 23468999999999999999999999999999999999
Q ss_pred CceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhc--ccCcccEEEEEEEEccccccccccCCCC
Q 001572 131 NCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQ--NADYSMKVSFLELYNEDITDLLAQEDHS 208 (1051)
Q Consensus 131 N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~--~~~~sV~vS~lEIYnE~v~DLL~~~~~~ 208 (1051)
|+||||||||||||||||+|+... +..+|||||++++||+.+... +.+|.|++||+|||||.++|||++.
T Consensus 77 n~~i~ayG~tgSGKT~Tm~G~~~~-----~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~--- 148 (325)
T cd01369 77 NGTIFAYGQTGSGKTYTMEGPPGD-----PELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS--- 148 (325)
T ss_pred cceEEEeCCCCCCceEEecCCCCc-----cccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc---
Confidence 999999999999999999997532 457899999999999998764 3479999999999999999999865
Q ss_pred CcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEecccCCc
Q 001572 209 KSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGDE 288 (1051)
Q Consensus 209 ~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~~~~ 288 (1051)
+..+.+++++.++++|+|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+......
T Consensus 149 -------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-- 219 (325)
T cd01369 149 -------KDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETG-- 219 (325)
T ss_pred -------cCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCC--
Confidence 24688999999999999999999999999999999999999999999999999999999999987654332
Q ss_pred ceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhCC-CCCcCCCCchhhhhhhccCCCcceeE
Q 001572 289 ELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHS-AHIPYRDSKLTRLLRDSLGGKTKTCI 367 (1051)
Q Consensus 289 ~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~~-~hIPYRdSKLTrLLqdSLGGnskT~m 367 (1051)
....|+|+||||||||+..++++.+.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+|||+++|+|
T Consensus 220 -~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~ 298 (325)
T cd01369 220 -SKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTL 298 (325)
T ss_pred -CEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEE
Confidence 3468999999999999999999999999999999999999999999999987 99999999999999999999999999
Q ss_pred EeecCCCCCChHhhHHHHHHHHHhhhc
Q 001572 368 IATISPSAHSLEETMSTLDYAYRAKNI 394 (1051)
Q Consensus 368 IatISPs~~~~eETLsTL~fA~RAk~I 394 (1051)
|+||||+..+++||++||+||.|||+|
T Consensus 299 I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 299 IICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred EEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999987
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.7e-73 Score=641.09 Aligned_cols=318 Identities=43% Similarity=0.730 Sum_probs=290.6
Q ss_pred ceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEeccCCCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCC
Q 001572 52 NVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFN 131 (1051)
Q Consensus 52 nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N 131 (1051)
+|+|+||+||++..|.. +...++.++++ ..+.+.. ....+.|.||+||+++++|++||+.++.|+|+.+++|||
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~-~~v~~~~----~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n 74 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDND-NTISLEE----STPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYN 74 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCC-CEEEEcC----CCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCc
Confidence 69999999999999884 55677777765 3444432 134689999999999999999999999999999999999
Q ss_pred ceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhc-ccCcccEEEEEEEEccccccccccCCCCCc
Q 001572 132 CTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQ-NADYSMKVSFLELYNEDITDLLAQEDHSKS 210 (1051)
Q Consensus 132 ~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~-~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~ 210 (1051)
+||||||||||||||||+|+. .++|||||++++||..+... +..|.|+|||+|||||.|+|||++..
T Consensus 75 ~~i~ayG~tgSGKT~T~~G~~--------~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~---- 142 (321)
T cd01374 75 GTIFAYGQTSSGKTFTMSGDE--------QEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSP---- 142 (321)
T ss_pred eeEEeecCCCCCCceeccCCC--------CCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCC----
Confidence 999999999999999999973 56899999999999998654 45899999999999999999998763
Q ss_pred ccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEecccCCcce
Q 001572 211 TEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGDEEL 290 (1051)
Q Consensus 211 ~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~ 290 (1051)
.++.+++++.++++|.|++++.|.|++|+..+|..|.++|++++|.+|..|||||+||+|+|........+...
T Consensus 143 ------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~ 216 (321)
T cd01374 143 ------QELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGT 216 (321)
T ss_pred ------CCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCc
Confidence 47899999999999999999999999999999999999999999999999999999999999987765534456
Q ss_pred eEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhCC--CCCcCCCCchhhhhhhccCCCcceeEE
Q 001572 291 IKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHS--AHIPYRDSKLTRLLRDSLGGKTKTCII 368 (1051)
Q Consensus 291 i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~~--~hIPYRdSKLTrLLqdSLGGnskT~mI 368 (1051)
+..|+|+||||||||+..+.+ .+.+++|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+|||+++|+||
T Consensus 217 ~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i 295 (321)
T cd01374 217 VRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAII 295 (321)
T ss_pred EEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEE
Confidence 678999999999999999998 89999999999999999999999999985 999999999999999999999999999
Q ss_pred eecCCCCCChHhhHHHHHHHHHhhhc
Q 001572 369 ATISPSAHSLEETMSTLDYAYRAKNI 394 (1051)
Q Consensus 369 atISPs~~~~eETLsTL~fA~RAk~I 394 (1051)
+||||...+++||++||+||.||++|
T Consensus 296 ~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 296 CTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred EEeCCccccHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999986
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.9e-72 Score=635.65 Aligned_cols=325 Identities=41% Similarity=0.663 Sum_probs=287.3
Q ss_pred ceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEecc-------CCCCcCeeEecCcccCCCcchhhhhhhhhhhHHH
Q 001572 52 NVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSV-------ANKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVN 124 (1051)
Q Consensus 52 nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~-------~~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~ 124 (1051)
.|+|+||+||+...+.. .+.+.+++..+++..+. .+...++.|.||+||++ ++|++||+.++.|+|+
T Consensus 1 ~i~V~vRvRP~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~ 74 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS-----SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVD 74 (334)
T ss_pred CeEEEEECCCCCCCCCc-----cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHH
Confidence 48999999999874332 34555565565553321 12334678999999999 9999999999999999
Q ss_pred HhhcCCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhc-ccCcccEEEEEEEEccccccccc
Q 001572 125 EVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQ-NADYSMKVSFLELYNEDITDLLA 203 (1051)
Q Consensus 125 ~vl~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~-~~~~sV~vS~lEIYnE~v~DLL~ 203 (1051)
.+++|||+||||||||||||||||+|+.. ...++|||||++++||..++.. +..|.|++||+|||||+|+|||+
T Consensus 75 ~~~~G~n~~i~ayG~tgSGKTyTm~G~~~-----~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~ 149 (334)
T cd01375 75 SALDGYNGTIFAYGQTGAGKTFTMTGGTE-----SYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLG 149 (334)
T ss_pred HHhCCCccceeeecCCCCCCeEEccCCCC-----cccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCC
Confidence 99999999999999999999999999743 2357899999999999999764 45899999999999999999998
Q ss_pred cCCCCCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEec
Q 001572 204 QEDHSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEA 283 (1051)
Q Consensus 204 ~~~~~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~ 283 (1051)
+.... ....+++.+++++.++++|+|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+...
T Consensus 150 ~~~~~----~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~ 225 (334)
T cd01375 150 DTPEA----LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSR 225 (334)
T ss_pred CCccc----cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEec
Confidence 76422 12245789999999999999999999999999999999999999999999999999999999999998755
Q ss_pred ccCCcceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhCC-CCCcCCCCchhhhhhhccCCC
Q 001572 284 AVGDEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHS-AHIPYRDSKLTRLLRDSLGGK 362 (1051)
Q Consensus 284 ~~~~~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~~-~hIPYRdSKLTrLLqdSLGGn 362 (1051)
...+ .....|+|+||||||||+..++++.+.+++|+..||+||++|++||.+|+.+. .||||||||||+||+|+|||+
T Consensus 226 ~~~~-~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~ 304 (334)
T cd01375 226 EAGS-EVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGN 304 (334)
T ss_pred CCCC-CceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCC
Confidence 4433 34578999999999999999999999999999999999999999999999988 999999999999999999999
Q ss_pred cceeEEeecCCCCCChHhhHHHHHHHHHhh
Q 001572 363 TKTCIIATISPSAHSLEETMSTLDYAYRAK 392 (1051)
Q Consensus 363 skT~mIatISPs~~~~eETLsTL~fA~RAk 392 (1051)
|+|+||+||||+..+++|||+||+||.|++
T Consensus 305 ~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 305 CKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred ceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 20
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-69 Score=642.07 Aligned_cols=347 Identities=42% Similarity=0.638 Sum_probs=312.1
Q ss_pred eCCCCchhhhcCCCcEEEecCCcceEEEEeccCCCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeecc
Q 001572 59 CRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYG 138 (1051)
Q Consensus 59 vRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYG 138 (1051)
|||+..+|...|++.|+.+.+..+.|.+. .+++|+||+||+....|.++|+.+|.|+++.+++|||+|++|||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig-------~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlayg 73 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG-------KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYG 73 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec-------CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeec
Confidence 79999999999999999987777777652 36799999999999999999999999999999999999999999
Q ss_pred CCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhcc-cCcccEEEEEEEEccccccccccCCCCCcccccCCC
Q 001572 139 QTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQN-ADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKK 217 (1051)
Q Consensus 139 qTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~~-~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~ 217 (1051)
||||||||||.+..... ....|+|||++.++|..+.... ..|.|.|||+|||+|+|+|||.|.. .+.
T Consensus 74 QtgsgkTytmgt~~~~~----~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~--------~~~ 141 (913)
T KOG0244|consen 74 QTGSGKTYTMGTNDAPA----QDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSR--------LKA 141 (913)
T ss_pred ccCCCceeecccccccc----cccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhh--------hhh
Confidence 99999999998863221 1226999999999999997643 4799999999999999999998543 234
Q ss_pred ceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEecccCCcceeEeeeee
Q 001572 218 PISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGDEELIKCGKLN 297 (1051)
Q Consensus 218 ~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~i~~skL~ 297 (1051)
++.+++ ++|++.+.|++++.|.+..++...|..|...|++++|+||..|||||+||+|++.+...... ..+-++||+
T Consensus 142 ~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~--~s~~~sKlh 218 (913)
T KOG0244|consen 142 NIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK--RSSFCSKLH 218 (913)
T ss_pred ceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc--cchhhhhhh
Confidence 577887 88999999999999999999999999999999999999999999999999999875433322 224579999
Q ss_pred EeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhCC--CCCcCCCCchhhhhhhccCCCcceeEEeecCCCC
Q 001572 298 LVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHS--AHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSA 375 (1051)
Q Consensus 298 lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~~--~hIPYRdSKLTrLLqdSLGGnskT~mIatISPs~ 375 (1051)
|||||||||.+++++.|+|++|+.+||.+|++||+||+||.+.. .|||||||||||||||+||||+.|+||+||||++
T Consensus 219 lVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpad 298 (913)
T KOG0244|consen 219 LVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPAD 298 (913)
T ss_pred eeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhh
Confidence 99999999999999999999999999999999999999999865 5999999999999999999999999999999999
Q ss_pred CChHhhHHHHHHHHHhhhcccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 376 HSLEETMSTLDYAYRAKNIKNKPEANQKMSKAVLLKDLYLEIERMKEDVRAAR 428 (1051)
Q Consensus 376 ~~~eETLsTL~fA~RAk~Iknkp~vN~~~~k~~lik~l~~EI~~Lk~eL~~~r 428 (1051)
.+++||++||+||.||++|+|+|.+|++ ++...+..++.+|+.|+.+|...+
T Consensus 299 sn~~EtlnTl~ya~Rak~iknk~vvN~d-~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 299 SNAQETLNTLRYADRAKQIKNKPVVNQD-PKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred hhhhhHHHHHHHhhHHHHhccccccccc-HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999995 567778889999999999987765
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=4.1e-71 Score=623.54 Aligned_cols=324 Identities=43% Similarity=0.692 Sum_probs=292.7
Q ss_pred CceEEEEEeCCCCchhhhcCCCcEEEecCCc-ceEEEEeccCCCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhhcC
Q 001572 51 VNVQVLLRCRPLSDDEQKSNVPRVISCSEDK-REVTVLQSVANKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDG 129 (1051)
Q Consensus 51 ~nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~-~~v~v~~~~~~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G 129 (1051)
++|+|+||+||+...|. .....++.+++.. ..+.+... ....+.|.||+||+++++|++||+. +.|+|+.+++|
T Consensus 2 ~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~---~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G 76 (329)
T cd01366 2 GNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG---TGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDG 76 (329)
T ss_pred CCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC---CCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCC
Confidence 68999999999999887 3445566776653 45544332 2456899999999999999999997 69999999999
Q ss_pred CCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhc---ccCcccEEEEEEEEccccccccccCC
Q 001572 130 FNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQ---NADYSMKVSFLELYNEDITDLLAQED 206 (1051)
Q Consensus 130 ~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~---~~~~sV~vS~lEIYnE~v~DLL~~~~ 206 (1051)
||+||||||+|||||||||+|+. .++|||||++++||..++.. +..|.|++||+|||||+++|||++..
T Consensus 77 ~~~~i~ayG~tgSGKT~tl~G~~--------~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~ 148 (329)
T cd01366 77 YNVCIFAYGQTGSGKTYTMEGPP--------ENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKP 148 (329)
T ss_pred CceEEEEeCCCCCCCcEEecCCC--------CCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCc
Confidence 99999999999999999999973 57899999999999998764 46899999999999999999998753
Q ss_pred CCCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEecccC
Q 001572 207 HSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVG 286 (1051)
Q Consensus 207 ~~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~~ 286 (1051)
..+.++.|++++.++++|.|++++.|.|++|+..+|..|..+|.++.|.+|..|||||+||+|+|......
T Consensus 149 -------~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~-- 219 (329)
T cd01366 149 -------APKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ-- 219 (329)
T ss_pred -------CCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC--
Confidence 12467999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CcceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCcCCCCchhhhhhhccCCCccee
Q 001572 287 DEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSAHIPYRDSKLTRLLRDSLGGKTKTC 366 (1051)
Q Consensus 287 ~~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLTrLLqdSLGGnskT~ 366 (1051)
......|+|+||||||||+..+.++.+.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+|+|||+++|+
T Consensus 220 -~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~ 298 (329)
T cd01366 220 -TGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTL 298 (329)
T ss_pred -CCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEE
Confidence 2235689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCChHhhHHHHHHHHHhhhcccc
Q 001572 367 IIATISPSAHSLEETMSTLDYAYRAKNIKNK 397 (1051)
Q Consensus 367 mIatISPs~~~~eETLsTL~fA~RAk~Iknk 397 (1051)
||+||||...+++||++||+||.||++|++.
T Consensus 299 ~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 299 MFVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred EEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999873
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.6e-70 Score=619.96 Aligned_cols=330 Identities=50% Similarity=0.795 Sum_probs=301.6
Q ss_pred ceEEEEEeCCCCchhhhcCCCcEEEecCCc-ceEEEEeccCCCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCC
Q 001572 52 NVQVLLRCRPLSDDEQKSNVPRVISCSEDK-REVTVLQSVANKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGF 130 (1051)
Q Consensus 52 nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~-~~v~v~~~~~~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~ 130 (1051)
+|+|+||+||+...|...+.+.++.+.+.. ..+.+.. .......+.|.||+||+++++|.+||+.++.|+|+.+++|+
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~ 79 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNS-PKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGY 79 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeC-CCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCC
Confidence 689999999999999988889999887653 3555443 33445678999999999999999999999999999999999
Q ss_pred CceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhc--ccCcccEEEEEEEEccccccccccCCCC
Q 001572 131 NCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQ--NADYSMKVSFLELYNEDITDLLAQEDHS 208 (1051)
Q Consensus 131 N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~--~~~~sV~vS~lEIYnE~v~DLL~~~~~~ 208 (1051)
|+|||+||+|||||||||+|+. .++|||||++++||..+... +..|.|+|||+|||+|+++|||++.
T Consensus 80 ~~~i~~yG~tgSGKT~tl~G~~--------~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~--- 148 (335)
T smart00129 80 NATIFAYGQTGSGKTYTMSGTP--------DSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS--- 148 (335)
T ss_pred ceeEEEeCCCCCCCceEecCCC--------CCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC---
Confidence 9999999999999999999973 46899999999999999764 3589999999999999999999864
Q ss_pred CcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEecccCCc
Q 001572 209 KSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGDE 288 (1051)
Q Consensus 209 ~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~~~~ 288 (1051)
++++.+++++.+++++.|++++.|.|++|+.++|..|..+|.+++|.+|..|||||+||+|+|.+..... ..
T Consensus 149 -------~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~-~~ 220 (335)
T smart00129 149 -------PKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNS-SS 220 (335)
T ss_pred -------CCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCC-CC
Confidence 3578999999999999999999999999999999999999999999999999999999999998764433 23
Q ss_pred ceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhh--CCCCCcCCCCchhhhhhhccCCCccee
Q 001572 289 ELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVE--HSAHIPYRDSKLTRLLRDSLGGKTKTC 366 (1051)
Q Consensus 289 ~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~--~~~hIPYRdSKLTrLLqdSLGGnskT~ 366 (1051)
.....|+|+||||||+|+..+.++.+.+++|+..||+||.+|++||.+|++ +..|||||+||||+||+++|||+++|+
T Consensus 221 ~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~ 300 (335)
T smart00129 221 GSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTL 300 (335)
T ss_pred CCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEE
Confidence 446789999999999999999999999999999999999999999999999 567999999999999999999999999
Q ss_pred EEeecCCCCCChHhhHHHHHHHHHhhhcccccccc
Q 001572 367 IIATISPSAHSLEETMSTLDYAYRAKNIKNKPEAN 401 (1051)
Q Consensus 367 mIatISPs~~~~eETLsTL~fA~RAk~Iknkp~vN 401 (1051)
||+||||...+++||++||+||.++++|+|+|.+|
T Consensus 301 ~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 301 MIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred EEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999999999999999999875
No 23
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=4.4e-71 Score=663.50 Aligned_cols=335 Identities=43% Similarity=0.662 Sum_probs=296.6
Q ss_pred CCCceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEeccC-CCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhh
Q 001572 49 KEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVA-NKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVL 127 (1051)
Q Consensus 49 ~~~nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~-~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl 127 (1051)
-.+||+|+|||||+.+.|.......++..+.. .++.+..+.. .+...+.|.||+||+|.++|.+||.. +.|+|.++|
T Consensus 312 LkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e-~~~lv~S~l 389 (670)
T KOG0239|consen 312 LKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQ-GEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEE-VSPLVQSAL 389 (670)
T ss_pred hhcCceEEEEecCCCccccccccccccccCCc-ceeEeecCCCCCCCccccceeeeecCCcccHHHHHHH-HHHHHHHHh
Confidence 35799999999999998887544445554443 3455543332 22223469999999999999999987 899999999
Q ss_pred cCCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhc--ccCcccEEEEEEEEccccccccccC
Q 001572 128 DGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQ--NADYSMKVSFLELYNEDITDLLAQE 205 (1051)
Q Consensus 128 ~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~--~~~~sV~vS~lEIYnE~v~DLL~~~ 205 (1051)
+|||+||||||||||||||||.|+ .++++|||||++++||..+... ++.|.+.+||+|||||.|+|||++.
T Consensus 390 DGYnVCIFAYGQTGSGKTyTM~G~-------~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~ 462 (670)
T KOG0239|consen 390 DGYNVCIFAYGQTGSGKTYTMSGP-------TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDE 462 (670)
T ss_pred cCcceeEEEecccCCCccccccCC-------CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhcccc
Confidence 999999999999999999999995 2578999999999999988653 5799999999999999999999865
Q ss_pred CCCCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEeccc
Q 001572 206 DHSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAV 285 (1051)
Q Consensus 206 ~~~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~ 285 (1051)
. ....+.|+.+++++++|.+++.+.|.+.+++..+++.|..+|.+++|.+|.+|||||+||+|+|.-.+...
T Consensus 463 ~--------~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t 534 (670)
T KOG0239|consen 463 S--------YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELT 534 (670)
T ss_pred c--------cccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCc
Confidence 3 23578999999999999999999999999999999999999999999999999999999999997553332
Q ss_pred CCcceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCcCCCCchhhhhhhccCCCcce
Q 001572 286 GDEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSAHIPYRDSKLTRLLRDSLGGKTKT 365 (1051)
Q Consensus 286 ~~~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLTrLLqdSLGGnskT 365 (1051)
.....|.|+|||||||||.+++++.|.|++|+..||+||++||.||.||+....|||||+||||+||||||||++||
T Consensus 535 ---~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKT 611 (670)
T KOG0239|consen 535 ---GIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKT 611 (670)
T ss_pred ---ccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccce
Confidence 23457999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCCCCChHhhHHHHHHHHHhhhcccccccccc
Q 001572 366 CIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQK 403 (1051)
Q Consensus 366 ~mIatISPs~~~~eETLsTL~fA~RAk~Iknkp~vN~~ 403 (1051)
+|+++|||...++.||+++|+||.|++.+...|-.-+.
T Consensus 612 Lmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~ 649 (670)
T KOG0239|consen 612 LMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQV 649 (670)
T ss_pred eeEEEeCccHHHHhhhhhccchHHHhhceecccccccc
Confidence 99999999999999999999999999999988766444
No 24
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=3.4e-68 Score=598.95 Aligned_cols=322 Identities=49% Similarity=0.775 Sum_probs=292.1
Q ss_pred ceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEeccC-CCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCC
Q 001572 52 NVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVA-NKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGF 130 (1051)
Q Consensus 52 nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~-~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~ 130 (1051)
+|+|+||+||+...| ..+.+.++.++++ +.|.+..+.. ....++.|.||+||+++++|++||+.++.|+|+.+++|+
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~ 78 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDN-KTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGY 78 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCC-CEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 699999999999877 3456778888765 4566544321 234468999999999999999999999999999999999
Q ss_pred CceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhc---ccCcccEEEEEEEEccccccccccCCC
Q 001572 131 NCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQ---NADYSMKVSFLELYNEDITDLLAQEDH 207 (1051)
Q Consensus 131 N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~---~~~~sV~vS~lEIYnE~v~DLL~~~~~ 207 (1051)
|+||||||+|||||||||+|+. .++|||||++++||..+... ...|.|.+||+|||+|+|+|||++..
T Consensus 79 ~~~i~~yG~tgSGKT~tl~G~~--------~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~- 149 (328)
T cd00106 79 NGTIFAYGQTGSGKTYTMFGSP--------KDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP- 149 (328)
T ss_pred ceeEEEecCCCCCCeEEecCCC--------CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC-
Confidence 9999999999999999999973 57899999999999999876 36899999999999999999998753
Q ss_pred CCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEecccCC
Q 001572 208 SKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGD 287 (1051)
Q Consensus 208 ~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~~~ 287 (1051)
...++.+++++.++++|.|++++.|.|++|++.+|..|..+|.++.|.+|..|||||+||+|+|.........
T Consensus 150 -------~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~ 222 (328)
T cd00106 150 -------PSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDG 222 (328)
T ss_pred -------CCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCC
Confidence 2467999999999999999999999999999999999999999999999999999999999999887665432
Q ss_pred cceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhCC--CCCcCCCCchhhhhhhccCCCcce
Q 001572 288 EELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHS--AHIPYRDSKLTRLLRDSLGGKTKT 365 (1051)
Q Consensus 288 ~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~~--~hIPYRdSKLTrLLqdSLGGnskT 365 (1051)
. ....|+|+||||||+|+..+.+..+.+.+|+..||+||.+|++||.+|+.+. .|||||+||||+||||+|||+++|
T Consensus 223 ~-~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t 301 (328)
T cd00106 223 R-SIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKT 301 (328)
T ss_pred c-cEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeE
Confidence 1 3578999999999999999999999999999999999999999999999988 999999999999999999999999
Q ss_pred eEEeecCCCCCChHhhHHHHHHHHHhh
Q 001572 366 CIIATISPSAHSLEETMSTLDYAYRAK 392 (1051)
Q Consensus 366 ~mIatISPs~~~~eETLsTL~fA~RAk 392 (1051)
+||+||||...+++||++||+||.|||
T Consensus 302 ~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 302 LMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999986
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=3.4e-69 Score=608.74 Aligned_cols=325 Identities=46% Similarity=0.785 Sum_probs=285.8
Q ss_pred EeCCCCchhhhcCCCcEEEecCCcceEEE-EeccCCCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeee
Q 001572 58 RCRPLSDDEQKSNVPRVISCSEDKREVTV-LQSVANKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFA 136 (1051)
Q Consensus 58 RvRP~~~~E~~~~~~~vv~~~~~~~~v~v-~~~~~~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfA 136 (1051)
||||++..|...+...++.+......... ..........+.|.||+||+++++|.+||+.++.|+|+.+++|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 99999999999888887776532111111 11222344568999999999999999999999999999999999999999
Q ss_pred ccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhcc----cCcccEEEEEEEEccccccccccCCCCCccc
Q 001572 137 YGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQN----ADYSMKVSFLELYNEDITDLLAQEDHSKSTE 212 (1051)
Q Consensus 137 YGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~~----~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~ 212 (1051)
||+|||||||||+|+ ..+.++|||||++++||..++... ..|.|+|||+|||||+|+|||++..
T Consensus 81 yG~tgSGKT~Tm~G~------~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~------ 148 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGS------NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNN------ 148 (335)
T ss_dssp EESTTSSHHHHHTBS------TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTS------
T ss_pred ecccccccccccccc------ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccc------
Confidence 999999999999997 124679999999999999998754 3699999999999999999999764
Q ss_pred ccCCCceeeeecCCCc-eEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEecccCCcc-e
Q 001572 213 DKQKKPISLMEDGKGC-VVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGDEE-L 290 (1051)
Q Consensus 213 ~~~~~~l~i~Ed~~~g-v~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~~~~~-~ 290 (1051)
.....++.+++++..| ++|+|++++.|.++++++.+|..|..+|.++.|.+|..|||||+||+|.|.+......... .
T Consensus 149 ~~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~ 228 (335)
T PF00225_consen 149 SKSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEES 228 (335)
T ss_dssp SSTTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEE
T ss_pred cccccccceeeccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccc
Confidence 1123579999999876 9999999999999999999999999999999999999999999999999998877655432 3
Q ss_pred eEeeeeeEeeCCCCcccccCCCc-hhhhHHHHHhhhhHHHHHHHHHHHhhC--CCCCcCCCCchhhhhhhccCCCcceeE
Q 001572 291 IKCGKLNLVDLAGSENISRSGAR-EGRAREAGEINKSLLTLGRVINALVEH--SAHIPYRDSKLTRLLRDSLGGKTKTCI 367 (1051)
Q Consensus 291 i~~skL~lVDLAGSEr~~ksga~-~~r~kEa~~INkSL~aLg~VI~aL~~~--~~hIPYRdSKLTrLLqdSLGGnskT~m 367 (1051)
...|+|+||||||+|+..+.++. +.+.+|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+|
T Consensus 229 ~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~ 308 (335)
T PF00225_consen 229 VKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTIL 308 (335)
T ss_dssp EEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEE
T ss_pred eeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceeccccccccccee
Confidence 57899999999999999999874 788999999999999999999999998 899999999999999999999999999
Q ss_pred EeecCCCCCChHhhHHHHHHHHHhhhc
Q 001572 368 IATISPSAHSLEETMSTLDYAYRAKNI 394 (1051)
Q Consensus 368 IatISPs~~~~eETLsTL~fA~RAk~I 394 (1051)
|+||||...+++||++||+||.++|+|
T Consensus 309 I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 309 IVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp EEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred EEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999987
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-67 Score=608.01 Aligned_cols=340 Identities=39% Similarity=0.615 Sum_probs=292.2
Q ss_pred CCCceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEe-------ccCCCCcCeeEecCcccCCCcchhhhhhhhhhh
Q 001572 49 KEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQ-------SVANKQIDRVFTFDKVFGPKAQQRSIYDQAIVP 121 (1051)
Q Consensus 49 ~~~nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~-------~~~~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~p 121 (1051)
....|.||||+||+.+.- +...++.+-.....+.... ...+++..+.|.|.+||+|.++|.+||+.++.|
T Consensus 29 ~~d~v~v~~rvrP~~~~~---~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~p 105 (809)
T KOG0247|consen 29 SKDPVLVVCRVRPLSDAS---EDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAP 105 (809)
T ss_pred hhcchheeEeecCCCCCc---cccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHH
Confidence 446899999999998632 2333444443332222211 012345678999999999999999999999999
Q ss_pred HHHHhhcCCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhh----------------------
Q 001572 122 IVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEA---------------------- 179 (1051)
Q Consensus 122 lV~~vl~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~---------------------- 179 (1051)
+|.+++.|.|..+|+||.|||||||||+|+ +..+||+||+++-||..|..
T Consensus 106 lV~dlLkgqn~LlFTyGVTgSGKTYTm~G~--------~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~ 177 (809)
T KOG0247|consen 106 LVKDLLKGQNSLLFTYGVTGSGKTYTMTGT--------PDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEE 177 (809)
T ss_pred HHHHHHcccceeEEEeeccCCCceEEeecC--------CCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHH
Confidence 999999999999999999999999999997 45789999999999977643
Q ss_pred --------------------------------------------cccCcccEEEEEEEEccccccccccCCCCCcccccC
Q 001572 180 --------------------------------------------QNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQ 215 (1051)
Q Consensus 180 --------------------------------------------~~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~ 215 (1051)
.+..|+|+|||+|||||-|||||.+.+..+. -
T Consensus 178 ~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~----~ 253 (809)
T KOG0247|consen 178 DALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGK----L 253 (809)
T ss_pred HHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccch----h
Confidence 0113789999999999999999987542211 1
Q ss_pred CCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEecccCCcceeEeee
Q 001572 216 KKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGDEELIKCGK 295 (1051)
Q Consensus 216 ~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~~~~~~i~~sk 295 (1051)
.+...+++|.+|..||.|+++|.|.|.+|++.+|..|.++|+.++|.+|+.|||||+||+|.|.+.+... +...++.|.
T Consensus 254 ~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~-~s~~i~vSq 332 (809)
T KOG0247|consen 254 QKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQ-DSNQITVSQ 332 (809)
T ss_pred hhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccccc-ccCceeEEe
Confidence 1236678999999999999999999999999999999999999999999999999999999998776653 456789999
Q ss_pred eeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhC-----CCCCcCCCCchhhhhhhccCCCcceeEEee
Q 001572 296 LNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEH-----SAHIPYRDSKLTRLLRDSLGGKTKTCIIAT 370 (1051)
Q Consensus 296 L~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~-----~~hIPYRdSKLTrLLqdSLGGnskT~mIat 370 (1051)
|.|||||||||..++++.|.|++||++||.||++||+||.+|..+ ..+|||||||||++++.+|.|+.+.+||+|
T Consensus 333 lsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~ 412 (809)
T KOG0247|consen 333 LSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVC 412 (809)
T ss_pred eeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEe
Confidence 999999999999999999999999999999999999999999874 468999999999999999999999999999
Q ss_pred cCCCCCChHhhHHHHHHHHHhhhccccccccccc
Q 001572 371 ISPSAHSLEETMSTLDYAYRAKNIKNKPEANQKM 404 (1051)
Q Consensus 371 ISPs~~~~eETLsTL~fA~RAk~Iknkp~vN~~~ 404 (1051)
|+|.+.+|+|+++.|+||.-|..|.+.+-++...
T Consensus 413 vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~~~~ 446 (809)
T KOG0247|consen 413 VNPKAEDYDENLNVLKFAEIAQEVEVARPVIKKQ 446 (809)
T ss_pred cCCchhhHHHHHHHHHHHHhcccccccCcccccC
Confidence 9999999999999999999999999888776554
No 27
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-66 Score=586.08 Aligned_cols=334 Identities=38% Similarity=0.574 Sum_probs=292.1
Q ss_pred CCCCCCceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEeccCC-----CCcCeeEecCcccCCCcchhhhhhhhhh
Q 001572 46 DRDKEVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVAN-----KQIDRVFTFDKVFGPKAQQRSIYDQAIV 120 (1051)
Q Consensus 46 ~~~~~~nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~~-----~~~~k~F~FD~VF~~~asQ~~Vy~~~v~ 120 (1051)
+......|.|+||-||++..|.......||+++.. ..+.|+.+... --....|.||++||..+++..||..+++
T Consensus 203 ~~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~-~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~ 281 (676)
T KOG0246|consen 203 DGVNEHRICVCVRKRPLNKKELTKKEIDVISVPSK-NVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAK 281 (676)
T ss_pred CCCccceEEEEeecCCCCchhccccccceEecccc-ceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhh
Confidence 34455689999999999999998888888888643 34555442210 0124689999999999999999999999
Q ss_pred hHHHHhhcCCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhcc---cCcccEEEEEEEEccc
Q 001572 121 PIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQN---ADYSMKVSFLELYNED 197 (1051)
Q Consensus 121 plV~~vl~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~~---~~~sV~vS~lEIYnE~ 197 (1051)
|+|..+|+|--+|+||||||||||||||.|++... .-....||..++.+++|..+.... .++.|.|||||||+.+
T Consensus 282 PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk--~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGK 359 (676)
T KOG0246|consen 282 PLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGK--AQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGK 359 (676)
T ss_pred HHHHHHHhCCceeeeeeccCCCCceeecccccCcc--cccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcc
Confidence 99999999999999999999999999999986543 234668999999999999998743 4789999999999999
Q ss_pred cccccccCCCCCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEE
Q 001572 198 ITDLLAQEDHSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSIT 277 (1051)
Q Consensus 198 v~DLL~~~~~~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~ 277 (1051)
|||||+. ++.|.+.||+++.|.|.||.|..|.+.+|++.+|+.|++-|+++.|..|..|||||+||.|.
T Consensus 360 vfDLL~~-----------k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIi 428 (676)
T KOG0246|consen 360 VYDLLND-----------KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQII 428 (676)
T ss_pred hhhhhcc-----------ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeee
Confidence 9999974 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCcceeEeeeeeEeeCCCCcccccCC-CchhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCcCCCCchhhhhh
Q 001572 278 VHIKEAAVGDEELIKCGKLNLVDLAGSENISRSG-AREGRAREAGEINKSLLTLGRVINALVEHSAHIPYRDSKLTRLLR 356 (1051)
Q Consensus 278 v~~~~~~~~~~~~i~~skL~lVDLAGSEr~~ksg-a~~~r~kEa~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLTrLLq 356 (1051)
+... ++ ..-.||+.||||||+||...+. +..++..||..||+||++|..||.||..++.|+|||.||||.+|+
T Consensus 429 lr~~-----~~-~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLR 502 (676)
T KOG0246|consen 429 LRKH-----GE-FKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLR 502 (676)
T ss_pred eecC-----Cc-ceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHH
Confidence 8632 11 2346999999999999986544 555667799999999999999999999999999999999999999
Q ss_pred hccCC-CcceeEEeecCCCCCChHhhHHHHHHHHHhhhcccccc
Q 001572 357 DSLGG-KTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPE 399 (1051)
Q Consensus 357 dSLGG-nskT~mIatISPs~~~~eETLsTL~fA~RAk~Iknkp~ 399 (1051)
|||=| |++||||+||||...+.|.||+|||||.|+|...-.+.
T Consensus 503 DSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 503 DSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred HhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 99977 99999999999999999999999999999999765444
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.1e-63 Score=589.39 Aligned_cols=348 Identities=47% Similarity=0.735 Sum_probs=301.6
Q ss_pred CCceEEEEEeCCCCchhhhcCCCcEEEecCCcceEEEEeccCCCCcCeeEecCcccCCCcchhhhhhhhhhhHHHHhhcC
Q 001572 50 EVNVQVLLRCRPLSDDEQKSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDG 129 (1051)
Q Consensus 50 ~~nVkV~vRvRP~~~~E~~~~~~~vv~~~~~~~~v~v~~~~~~~~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G 129 (1051)
-.+++++++..|-...+ .++... +...+.. ......+|.||+||++.++|.+||+..+.|+++.++.|
T Consensus 21 ~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~-----~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g 88 (568)
T COG5059 21 VSDIKSTIRIIPGELGE------RLINTS-KKSHVSL-----EKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLG 88 (568)
T ss_pred ecCceEEEeecCCCcch------heeecc-ccccccc-----ccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhc
Confidence 35888999999865443 111111 1111111 11125789999999999999999999999999999999
Q ss_pred CCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhcc--cCcccEEEEEEEEccccccccccCCC
Q 001572 130 FNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQN--ADYSMKVSFLELYNEDITDLLAQEDH 207 (1051)
Q Consensus 130 ~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~~--~~~sV~vS~lEIYnE~v~DLL~~~~~ 207 (1051)
|||||||||||||||||||.|.. ..+||||+++.+||+.++... ..|.|.|||+|||||+++|||.+...
T Consensus 89 ~N~TvfayGqTgsgKtyt~~G~~--------~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~ 160 (568)
T COG5059 89 YNCTVFAYGQTGSGKTYTMSGTE--------EEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEE 160 (568)
T ss_pred ccceEEEEcccCCCceeEeecCc--------cccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccc
Confidence 99999999999999999999974 578999999999999998876 78999999999999999999987642
Q ss_pred CCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEEEEEEEEecccCC
Q 001572 208 SKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFSITVHIKEAAVGD 287 (1051)
Q Consensus 208 ~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~IftI~v~~~~~~~~~ 287 (1051)
.+.++++..++|+|.|+++..+.+++|++.+|.+|..+|+++.|.+|+.|||||+||++++.......+.
T Consensus 161 ----------~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~ 230 (568)
T COG5059 161 ----------SLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGT 230 (568)
T ss_pred ----------cccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccc
Confidence 2678899999999999999999999999999999999999999999999999999999999877655432
Q ss_pred cceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhh--CCCCCcCCCCchhhhhhhccCCCcce
Q 001572 288 EELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVE--HSAHIPYRDSKLTRLLRDSLGGKTKT 365 (1051)
Q Consensus 288 ~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~--~~~hIPYRdSKLTrLLqdSLGGnskT 365 (1051)
...++|+||||||||++..+++.+.|++|+..||+||++||+||++|.+ +..|||||+||||||||++|||+++|
T Consensus 231 ---~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~ 307 (568)
T COG5059 231 ---SETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNT 307 (568)
T ss_pred ---eecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccE
Confidence 2347999999999999999999999999999999999999999999998 88999999999999999999999999
Q ss_pred eEEeecCCCCCChHhhHHHHHHHHHhhhcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCh
Q 001572 366 CIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQKMSKAVLLKDLYLEIERMKEDVRAARDKNGVYVPH 437 (1051)
Q Consensus 366 ~mIatISPs~~~~eETLsTL~fA~RAk~Iknkp~vN~~~~k~~lik~l~~EI~~Lk~eL~~~r~~~g~~~~~ 437 (1051)
+|||||+|...+++||.+||+||.||++|+|+|..|.. .+...++..++.++...+...+.+...
T Consensus 308 ~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~-------~~~~~~~~~~~~d~~~~~~~~~~~~~~ 372 (568)
T COG5059 308 RVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS-------SDSSREIEEIKFDLSEDRSEIEILVFR 372 (568)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc-------CcchHHHHHHHhhhhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999964 233455677777777766666555443
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=2.8e-49 Score=412.23 Aligned_cols=179 Identities=54% Similarity=0.845 Sum_probs=169.3
Q ss_pred hhhhhhhhHHHHhhcCCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhcccCcccEEEEEEE
Q 001572 114 IYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQNADYSMKVSFLEL 193 (1051)
Q Consensus 114 Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~~~~~sV~vS~lEI 193 (1051)
||+.++ |+|+.+++|||+|||+||||||||||||+|+. .++|||||++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~--------~~~Giip~~~~~--------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR--------EGAGIIPRTVTD--------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCC--------CCCCcchHHHHH---------------------
Confidence 999999 99999999999999999999999999999973 568999999987
Q ss_pred EccccccccccCCCCCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeE
Q 001572 194 YNEDITDLLAQEDHSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSV 273 (1051)
Q Consensus 194 YnE~v~DLL~~~~~~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~I 273 (1051)
++.+|..|..+|+++.|.+|..|||||+|
T Consensus 58 ---------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i 86 (186)
T cd01363 58 ---------------------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSV 86 (186)
T ss_pred ---------------------------------------------------HHHHHhhccccccccccCCCCccCcccEE
Confidence 78899999999999999999999999999
Q ss_pred EEEEEEEEecccCCcceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCcCCCCchhh
Q 001572 274 FSITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSAHIPYRDSKLTR 353 (1051)
Q Consensus 274 ftI~v~~~~~~~~~~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~~~~~hIPYRdSKLTr 353 (1051)
|+|++........+......++|+||||||||+..++++.+.+++|+..||+||.+|++||.+|+++..|||||+||||+
T Consensus 87 ~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~ 166 (186)
T cd01363 87 FRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTR 166 (186)
T ss_pred EEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHH
Confidence 99999987765544455678999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCcceeEEeecCC
Q 001572 354 LLRDSLGGKTKTCIIATISP 373 (1051)
Q Consensus 354 LLqdSLGGnskT~mIatISP 373 (1051)
||||+||||++|+||+||||
T Consensus 167 lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 167 LLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HHHHhcCCCCeEEEEEEeCc
Confidence 99999999999999999999
No 30
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=98.98 E-value=0.00039 Score=87.57 Aligned_cols=114 Identities=13% Similarity=0.067 Sum_probs=70.7
Q ss_pred HHHhhhhHHHHHhhhhhcccchhhhhhhhhhHHHHhHHHhHhhhhhhhhhHHHHHhHhhhHHHHhhhcc-------chhh
Q 001572 893 ENISANQTAHEEFKSACSSMDMDFGAKAGDIVVSVNDLLMRDRESKMEIDSITTICLDQLKFVQEKHGE-------NLST 965 (1051)
Q Consensus 893 ~~~~~n~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~h~~-------~~~~ 965 (1051)
.-.+.|+.|+....++...........-..++.......+.-..+...+.+....+...|..|-.+-.. .+..
T Consensus 823 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~~~l~~~~~~~~~k~~~e~~s 902 (1041)
T KOG0243|consen 823 TLGKQNENHHNEVLSAIEEKQQAMKSVLKELLENAESQVDECKEAIESLKSLESNHVATLDSLVRGVSEQNKKLQDEFLS 902 (1041)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhHHhhHHHHH
Confidence 334567778888887777777777777777777777777766666666666666555555555333222 2222
Q ss_pred Hhhhhhhhhhhh-hcccCCCCCCCCcccCCCCChhhHhhhcC
Q 001572 966 IRNQAEKCFTKD-YMVDQHTSTTPKKRAITVPSLASIEEMRT 1006 (1051)
Q Consensus 966 I~~~a~~~l~~e-Y~~~ept~~TP~k~~~~vPs~~sIe~lRt 1006 (1051)
+-....++|..- -.-+-|++.+|......+|....|-.|+-
T Consensus 903 ~~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~t~~~~~~~~ 944 (1041)
T KOG0243|consen 903 LLNSKLNSFDVLTNSIVTPHSILLKLDDDVLPETLVIISPSL 944 (1041)
T ss_pred HHhHHHhhhhhccccccccccccccccccccccchHhhcccH
Confidence 223333333211 11345999999999999999975555443
No 31
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.68 E-value=0.008 Score=81.17 Aligned_cols=163 Identities=13% Similarity=0.153 Sum_probs=85.5
Q ss_pred HHHHHhhhHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhccChH
Q 001572 806 KRLQNEISSVQQVSTDARKELSKYIQNVESHFMEDTFSAAESRAIMENSLQECSKTVDSSRQQWEYAQSYIRNLNTSSTA 885 (1051)
Q Consensus 806 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~m~~~lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 885 (1051)
..+...++.+|.-.+......+.++.+ ....+....-........+..+.+-.+.-..-+.+...++..+... ...-.
T Consensus 1241 k~~E~~l~elq~k~~~~~~~~~~l~~q-~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e-~r~k~ 1318 (1930)
T KOG0161|consen 1241 KKLEAQLSELQLKLDEQERLRNDLTAK-RSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEE-TREKS 1318 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 444455555555555555555555444 2222222222222222222233333333333334444455555554 33333
Q ss_pred HHHHHHHHHHhhhhHHHHHhhhhhcccchhhhhhhhhhHHHHhHHHhHhhhhhhhhhHHHHHhHhhhHHHHhhhccchhh
Q 001572 886 EIKSAIKENISANQTAHEEFKSACSSMDMDFGAKAGDIVVSVNDLLMRDRESKMEIDSITTICLDQLKFVQEKHGENLST 965 (1051)
Q Consensus 886 ~~~~~v~~~~~~n~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~h~~~~~~ 965 (1051)
++..-++..... +.......+++.+.. .++.-.+-..-....+.+..+..-+..+.+.|++.+..-...+.+
T Consensus 1319 ~l~~~l~~l~~e-------~~~l~e~leee~e~~-~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~ 1390 (1930)
T KOG0161|consen 1319 ALENALRQLEHE-------LDLLREQLEEEQEAK-NELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQE 1390 (1930)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 444444433333 333333344444333 345556666677777788888888888888888888888888888
Q ss_pred Hhhhhhhhhhhhh
Q 001572 966 IRNQAEKCFTKDY 978 (1051)
Q Consensus 966 I~~~a~~~l~~eY 978 (1051)
.....+-+...-+
T Consensus 1391 ~qe~~e~~~~~~~ 1403 (1930)
T KOG0161|consen 1391 LEEQIEAANAKNA 1403 (1930)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766555444
No 32
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.44 E-value=0.029 Score=76.00 Aligned_cols=150 Identities=12% Similarity=0.149 Sum_probs=91.2
Q ss_pred hHHHhHHHhHHhhHhhHHHhhHHHHHhhhHH---HHHhhHHHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHhh
Q 001572 785 RKTAMVSKASSNIQDTNIQQNKRLQNEISSV---QQVSTDARKELSKYIQNVESHFMEDTFSAAESRAIMENSLQECSKT 861 (1051)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~m~~~lq~~~~~ 861 (1051)
|++.-+...+..++.-+..-...++++...+ +...+.+..++..|..+.+.....-+--....+.++..-||++-..
T Consensus 1315 r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~ 1394 (1930)
T KOG0161|consen 1315 REKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQ 1394 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4444455567777777777777777665544 4556777888889999988888887777888888888888888888
Q ss_pred hhhhhHHHHHHHHHHHhhhccChHHHHHHHHHH---HhhhhHHHHHhhhhhcccchhhhhhhhhhHHHHhHHHhHhhhhh
Q 001572 862 VDSSRQQWEYAQSYIRNLNTSSTAEIKSAIKEN---ISANQTAHEEFKSACSSMDMDFGAKAGDIVVSVNDLLMRDRESK 938 (1051)
Q Consensus 862 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~---~~~n~~~~~~~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 938 (1051)
+.........-.+..+.| .+++++..-+- +.+...+ .+-....+..+++......++..-+|.+-..-+...
T Consensus 1395 ~e~~~~~~~~Lek~k~~l----~~el~d~~~d~~~~~~~~~~l-e~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~ 1469 (1930)
T KOG0161|consen 1395 IEAANAKNASLEKAKNRL----QQELEDLQLDLERSRAAVAAL-EKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLS 1469 (1930)
T ss_pred HHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 777655444444333333 33444333322 2112222 222223345556666666666666666555444433
Q ss_pred h
Q 001572 939 M 939 (1051)
Q Consensus 939 ~ 939 (1051)
.
T Consensus 1470 t 1470 (1930)
T KOG0161|consen 1470 T 1470 (1930)
T ss_pred H
Confidence 3
No 33
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.38 E-value=0.036 Score=74.12 Aligned_cols=225 Identities=13% Similarity=0.139 Sum_probs=116.3
Q ss_pred HHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 510 HMIALSTLKKKEFIISKLLCSEKSIIEQAKELRNELQNASEDITSLFSKLDQKDRMEAENQSLVLSFGSQLDQSLKGLHK 589 (1051)
Q Consensus 510 ~~~~~~~l~e~~~~~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl~rk~~~~~~n~~~~~~f~~~l~~~l~~~~~ 589 (1051)
+...+..++.-+..++.+......+...-..|..+++....+..+|+.-+.........+......-+..+.+++..+..
T Consensus 733 L~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~ 812 (1822)
T KOG4674|consen 733 LLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELER 812 (1822)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444334444444556666666666666666555544444444444444445556677777766
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 001572 590 TILGSVSQQQQQLRCMEEHAQSFLASKCDATHILESRIKRMSETYTAGLELLKELDNSMQKKASSDMEQISSKVSSQTMA 669 (1051)
Q Consensus 590 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1051)
.+. .+...++.....+..+..............|..+...+.+.+..+......+... ...+.++.+-+.+....
T Consensus 813 el~----~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~l-e~k~~eL~k~l~~~~~~ 887 (1822)
T KOG4674|consen 813 ELQ----KLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKL-EIKLSELEKRLKSAKTQ 887 (1822)
T ss_pred HHH----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHH
Confidence 554 4555577777777778788888888888888888888777777777666554332 23344444444444433
Q ss_pred HHHHHH-HHHHhHHHHHHHH---HHhHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 670 VEQFLV-TMVSEGKEVIEDI---KNSLSQQKELLALSA---QQQEEGLQRSWISSQEISKATMDFFNDIHRQASKLK 739 (1051)
Q Consensus 670 ~~~~l~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 739 (1051)
...+-. ....++....+.| ...+...+..|.... +++.+.+...=++...+......|+..+......+.
T Consensus 888 ~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~ 964 (1822)
T KOG4674|consen 888 LLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLH 964 (1822)
T ss_pred HhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 332221 1112222222222 222222233333322 233333443444445555566666666666555444
No 34
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.92 E-value=0.26 Score=66.52 Aligned_cols=31 Identities=16% Similarity=0.107 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001572 681 GKEVIEDIKNSLSQQKELLALSAQQQEEGLQ 711 (1051)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1051)
...-+.+.+..+..+..++..+.+++.....
T Consensus 499 ~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~ 529 (1311)
T TIGR00606 499 LKKEVKSLQNEKADLDRKLRKLDQEMEQLNH 529 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666555554
No 35
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.91 E-value=0.23 Score=65.50 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 001572 412 DLYLEIERMKEDVRA 426 (1051)
Q Consensus 412 ~l~~EI~~Lk~eL~~ 426 (1051)
.+..++..++.++..
T Consensus 674 ~l~~e~~~l~~~~~~ 688 (1179)
T TIGR02168 674 ERRREIEELEEKIEE 688 (1179)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444444444444433
No 36
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.86 E-value=0.098 Score=63.23 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001572 656 MEQISSKVSSQTMAVEQFLVTMVSEGKEVIEDIKNSLSQQKELLALSAQQQEEGL 710 (1051)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1051)
++.....+...+..|+..|..-...+..-+++-...+..++++++.+.-+++..+
T Consensus 315 lE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~Ll 369 (546)
T KOG0977|consen 315 LESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLL 369 (546)
T ss_pred ccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444555555555555555555566666666666666555555555554443
No 37
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.84 E-value=1.4e-07 Score=114.59 Aligned_cols=249 Identities=26% Similarity=0.266 Sum_probs=150.0
Q ss_pred CCceEEEEEeCCCCchhh-----------hcCCCcEEEecCCcceEEEEeccCCCCcCeeEecCcccCCCcchhhhhhhh
Q 001572 50 EVNVQVLLRCRPLSDDEQ-----------KSNVPRVISCSEDKREVTVLQSVANKQIDRVFTFDKVFGPKAQQRSIYDQA 118 (1051)
Q Consensus 50 ~~nVkV~vRvRP~~~~E~-----------~~~~~~vv~~~~~~~~v~v~~~~~~~~~~k~F~FD~VF~~~asQ~~Vy~~~ 118 (1051)
..++.|+|+|+|.+.... ..+.+..+..... .........|.||.+|.+...+..++..
T Consensus 304 ~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~---------~~~~~~~~~~~~d~~~~~~~~~~~~~~~- 373 (568)
T COG5059 304 NCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS---------SDSSREIEEIKFDLSEDRSEIEILVFRE- 373 (568)
T ss_pred CccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc---------CcchHHHHHHHhhhhhhhhhhhhHHHHH-
Confidence 349999999999984321 1111111111110 0011223568999999999998888875
Q ss_pred hhhHHHHhhcCCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhc---ccCcccEEEEEEEEc
Q 001572 119 IVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQ---NADYSMKVSFLELYN 195 (1051)
Q Consensus 119 v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~---~~~~sV~vS~lEIYn 195 (1051)
..-+++.-++| +++||+++.|+++||.- ...++.+-.+...|...... ...+...+-++++|-
T Consensus 374 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 439 (568)
T COG5059 374 QSQLSQSSLSG----IFAYMQSLKKETETLKS----------RIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEI 439 (568)
T ss_pred HHhhhhhhhhh----HHHHHhhhhhhhhcccc----------hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 45566777777 99999999999999953 34566666668888766543 334555555556652
Q ss_pred cccccccccCCCCCcccccCCCceeeeecCCCceEEcCceEEEcCCHHHHHHHHhhhhhccccccccccCCCCCCeeEEE
Q 001572 196 EDITDLLAQEDHSKSTEDKQKKPISLMEDGKGCVVVRGLEEEAVYSANDIYTILERGSAKRRTADTLLNKRSSRSHSVFS 275 (1051)
Q Consensus 196 E~v~DLL~~~~~~~~~~~~~~~~l~i~Ed~~~gv~V~gLte~~V~s~~e~~~lL~~G~~~R~~a~T~~N~~SSRSH~Ift 275 (1051)
..+.++..... .... ..+......+--...+.........+..... .....+..+.+..|-.++++|++|.
T Consensus 440 ~~~~~~~~e~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~ 510 (568)
T COG5059 440 DRLLLLREEEL-SKKK-------TKIHKLNKLRHDLSSLLSSIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFR 510 (568)
T ss_pred HHHHHHHHHhc-CChH-------HHHHHHHHHHHHHHHhhhhcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhh
Confidence 22222222111 0000 0000000000000000000011111111111 5677888899999999999999997
Q ss_pred EEEEEEecccCCcceeEeeeeeEeeCCCCcccccCCCchhhhHHHHHhhhhHHHHHHHHHHHh
Q 001572 276 ITVHIKEAAVGDEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALV 338 (1051)
Q Consensus 276 I~v~~~~~~~~~~~~i~~skL~lVDLAGSEr~~ksga~~~r~kEa~~INkSL~aLg~VI~aL~ 338 (1051)
.......... + .. .++.|||||+|+. .+...+.++++...+|++|..+|.+|.++.
T Consensus 511 ~~~~~~~~~~-~-~~----~~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 511 DHLNGSNSST-K-EL----SLNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hcccchhhhh-H-HH----Hhhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 7653221111 1 11 1799999999999 999999999999999999999999998864
No 38
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.82 E-value=0.066 Score=64.62 Aligned_cols=99 Identities=20% Similarity=0.220 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001572 465 EKEVDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEFIISKLLCSEKSIIEQAKELRNE 544 (1051)
Q Consensus 465 ~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~~~~~e~~l~~~~~~L~~~ 544 (1051)
+.++..++..+........+++.++.+++.++...++.+.+.+.........+......+..+......+......|..+
T Consensus 91 e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e 170 (546)
T KOG0977|consen 91 EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDE 170 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 34555555555555555566666666666666666666666555555555555555444554444333333334444445
Q ss_pred HHhHHHHHHHHHHHHhhHH
Q 001572 545 LQNASEDITSLFSKLDQKD 563 (1051)
Q Consensus 545 l~~~~~d~~~l~~kl~rk~ 563 (1051)
+.....+++.|...|.+-.
T Consensus 171 ~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 171 LKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHhhhhHHHHHHHH
Confidence 5555555555555555443
No 39
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.75 E-value=0.31 Score=62.17 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=35.9
Q ss_pred HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 672 QFLVTMVSEGKEVIEDIKNSLSQQKELLALSAQQQEEGLQRSWISSQEISKATMDFFNDIHRQAS 736 (1051)
Q Consensus 672 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1051)
+.|.+.+..|.+..+++.......++.|+...+.|-+ .+.+|+.+..+-.-+.+.+.++.+...
T Consensus 1545 ~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~-a~~ai~~a~~~~~~a~~~l~kv~~~t~ 1608 (1758)
T KOG0994|consen 1545 ENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGE-AQDAIQGADRDIRLAQQLLAKVQEETA 1608 (1758)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777776665444433 233444444443444445555544443
No 40
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.55 E-value=0.76 Score=61.48 Aligned_cols=26 Identities=15% Similarity=0.396 Sum_probs=12.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 749 KSKELDNFKKTFKEEAAKEEKDALEKI 775 (1051)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~i 775 (1051)
.......|.+.|..-. ..-+.++..+
T Consensus 1004 d~~~~~~f~~~f~~In-~~F~~if~~L 1029 (1163)
T COG1196 1004 DKEKRERFKETFDKIN-ENFSEIFKEL 1029 (1163)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 4445555666665433 2333344433
No 41
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.50 E-value=0.47 Score=57.60 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001572 446 EKKARIEKIEQLENDLNLSEKEVDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEFIIS 525 (1051)
Q Consensus 446 e~~~~~~~i~~le~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~ 525 (1051)
+...+..++..++..+....++...|+..+.........+..+...+..++.+....+.+|++.+..+.....+.+.+..
T Consensus 165 e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~ 244 (546)
T PF07888_consen 165 EVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELD 244 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777777777766666666666655555555566666666666666677777777777766666666666666
Q ss_pred HHHhhHHHHH
Q 001572 526 KLLCSEKSII 535 (1051)
Q Consensus 526 ~~~~~e~~l~ 535 (1051)
.+......+.
T Consensus 245 ~lk~~~~elE 254 (546)
T PF07888_consen 245 KLKELKAELE 254 (546)
T ss_pred HHHHHHHHHH
Confidence 5554433333
No 42
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.49 E-value=0.59 Score=58.53 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--------HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001572 488 ELKECKINLENRSKALLDLQEKHMIALSTLKKK--------EFIISKLLCSEKSIIEQAKELRNELQNASEDITSLFSKL 559 (1051)
Q Consensus 488 ~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~--------~~~~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl 559 (1051)
..+.++.+++..++.+.+|+-++..++..+.++ .+-..++..-+..|.+..-+||+..-+...|...++..+
T Consensus 326 RaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kel 405 (1243)
T KOG0971|consen 326 RAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKEL 405 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 445667777888888888888888887766655 245666777777888888899988888889999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001572 560 DQKDRMEAENQSLVLSFGSQLDQSLKGLHKTILGSVSQ 597 (1051)
Q Consensus 560 ~rk~~~~~~n~~~~~~f~~~l~~~l~~~~~~~~~~~~~ 597 (1051)
++|.. +|.++ ..-...|..+++.++..++...++
T Consensus 406 E~k~s---E~~eL-~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 406 EKKNS---ELEEL-RRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred HHHhh---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87743 22222 233445555555555555444433
No 43
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.49 E-value=0.46 Score=57.28 Aligned_cols=12 Identities=17% Similarity=0.183 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 001572 734 QASKLKTILEES 745 (1051)
Q Consensus 734 ~~~~l~~~~~~~ 745 (1051)
+...++..+++.
T Consensus 554 ~k~~iqs~le~~ 565 (581)
T KOG0995|consen 554 FKVSIQSSLENL 565 (581)
T ss_pred HHHHHHHHHHHH
Confidence 333444444444
No 44
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.44 E-value=0.07 Score=66.91 Aligned_cols=23 Identities=9% Similarity=0.406 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001572 407 AVLLKDLYLEIERMKEDVRAARD 429 (1051)
Q Consensus 407 ~~lik~l~~EI~~Lk~eL~~~r~ 429 (1051)
...+.+|..||++||.||.+.|.
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq 439 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQ 439 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Confidence 34566899999999999998775
No 45
>PRK02224 chromosome segregation protein; Provisional
Probab=97.41 E-value=0.9 Score=58.85 Aligned_cols=13 Identities=31% Similarity=0.554 Sum_probs=10.9
Q ss_pred eccCCCCCcccee
Q 001572 136 AYGQTGTGKTYTM 148 (1051)
Q Consensus 136 AYGqTGSGKTyTM 148 (1051)
-+|++|+|||..+
T Consensus 28 i~G~Ng~GKStil 40 (880)
T PRK02224 28 IHGVNGSGKSSLL 40 (880)
T ss_pred EECCCCCCHHHHH
Confidence 4899999998764
No 46
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.31 E-value=1.3 Score=58.53 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 001572 730 DIHRQASKLKTILEES 745 (1051)
Q Consensus 730 ~~~~~~~~l~~~~~~~ 745 (1051)
.+......|...+++.
T Consensus 969 ~l~~~i~~lg~aiee~ 984 (1179)
T TIGR02168 969 EARRRLKRLENKIKEL 984 (1179)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3444444555544444
No 47
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.30 E-value=0.88 Score=56.34 Aligned_cols=110 Identities=18% Similarity=0.226 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHH
Q 001572 451 IEKIEQLENDLNLSEKEVDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKK----EFIISK 526 (1051)
Q Consensus 451 ~~~i~~le~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~----~~~~~~ 526 (1051)
.+-...+++++...+.|+..|+........++..++......+.++.+.+-+|.++..++......|-.+ ..+-+.
T Consensus 91 Rrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~ 170 (1265)
T KOG0976|consen 91 RRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGED 170 (1265)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3444455666666666666666555444444444444444444444444444444433333332222222 123344
Q ss_pred HHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 001572 527 LLCSEKSIIEQAKELRNELQNASEDITSLFSKLD 560 (1051)
Q Consensus 527 ~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl~ 560 (1051)
+..+...|.+--.++...+.+.......++.|++
T Consensus 171 L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~ 204 (1265)
T KOG0976|consen 171 LHDKNEELNEFNMEFQTKLAEANREKKALEEKLE 204 (1265)
T ss_pred HhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333333333333333344444443
No 48
>PF13931 Microtub_bind: Kinesin-associated microtubule-binding
Probab=97.28 E-value=0.00011 Score=73.69 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=35.1
Q ss_pred ccCCCCCCCCcccCCCCChhhHhhhcCccchhhchhhhcccccc
Q 001572 980 VDQHTSTTPKKRAITVPSLASIEEMRTPAFENLQVENISDNNRS 1023 (1051)
Q Consensus 980 ~~ept~~TP~k~~~~vPs~~sIe~lRt~~~e~L~~~~~~~~~~~ 1023 (1051)
.|.|||+||.|+.|.||+. .+||.|++.| |..||.....
T Consensus 4 ~~~pTG~TP~rk~y~YP~~----L~~T~ph~~l-l~~~r~~~~~ 42 (143)
T PF13931_consen 4 EYVPTGTTPQRKEYQYPRT----LPRTEPHERL-LRRLREEQEE 42 (143)
T ss_pred cccCCCCCCCcccccCCCc----cCCCCcHHHH-HHHHHhccch
Confidence 4559999999999999999 5999999999 9999987653
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.26 E-value=1.6 Score=58.67 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=51.7
Q ss_pred ecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccC-CCCCccceeccCCCCCCC--CCCCCCcchhHHHHHHHHH
Q 001572 100 TFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQ-TGTGKTYTMEGGMRNKGG--DLPAEAGVIPRAVRQIFDT 176 (1051)
Q Consensus 100 ~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGq-TGSGKTyTM~G~~~~~~~--~~~~~~GIIpRal~~LF~~ 176 (1051)
.||.-|=|.++-.-||+. .++ +|--|||++|.- .|-|=-|-+.+.+..... +...+.++.+.....++..
T Consensus 57 sF~~yYLP~~nSyIIYEY-~R~------~G~~~~vvl~~~s~g~~V~YRFId~~y~~e~fi~~~~~~~~~~~~~~e~~r~ 129 (1201)
T PF12128_consen 57 SFDDYYLPYSNSYIIYEY-QRE------DGQLCCVVLSRKSDGRGVQYRFIDAPYQRELFIDENNGDLVQALSMWELIRE 129 (1201)
T ss_pred hHHHHcCCCCCceEEEee-ecc------CCceeEEEEeecCCCCceeeeeccCccchhhcccccCccccccccHHHHHHH
Confidence 677777777777778864 121 576677777744 333445888876433211 1112245678888888888
Q ss_pred HhhcccCcccEEE
Q 001572 177 LEAQNADYSMKVS 189 (1051)
Q Consensus 177 le~~~~~~sV~vS 189 (1051)
+...+..++=.++
T Consensus 130 ~~~~gv~~S~~i~ 142 (1201)
T PF12128_consen 130 LRRKGVQVSRKIT 142 (1201)
T ss_pred HHhCCCeeecCcC
Confidence 8877766655555
No 50
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.24 E-value=1.7 Score=58.36 Aligned_cols=100 Identities=23% Similarity=0.263 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001572 449 ARIEKIEQLENDLNLSEKEVDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEFIISKLL 528 (1051)
Q Consensus 449 ~~~~~i~~le~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~~~ 528 (1051)
.+..++..+..++.....++..+............++...+...+..++.....+..+..+..+....+...+..+..+.
T Consensus 671 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 750 (1163)
T COG1196 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELE 750 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666665555555555555544444444555555555555555555555444444444444444433333333
Q ss_pred hhHHHHHHHHHHHHHHHHhH
Q 001572 529 CSEKSIIEQAKELRNELQNA 548 (1051)
Q Consensus 529 ~~e~~l~~~~~~L~~~l~~~ 548 (1051)
.....+......+...+...
T Consensus 751 ~~~~~~~~~~~~~~~~l~~~ 770 (1163)
T COG1196 751 EELEELQERLEELEEELESL 770 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 51
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.24 E-value=1.3 Score=56.96 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=35.3
Q ss_pred HHHhhhhhhhHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhhHHHHHhhhh
Q 001572 857 ECSKTVDSSRQQWEYAQSYIRNLNTSSTAEIKSAIKENISANQTAHEEFKSA 908 (1051)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~n~~~~~~~~s~ 908 (1051)
+-.+.|.+...+-.+|+..++.| .+....++.++...++-+....++....
T Consensus 1644 ~a~~~a~sa~~~A~~a~q~~~~l-q~~~~~~~~l~~~r~~g~~~ar~rAe~L 1694 (1758)
T KOG0994|consen 1644 QAEKTAGSAKEQALSAEQGLEIL-QKYYELVDRLLEKRMEGSQAARERAEQL 1694 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 33455666666677777777777 6677888888888877777666554433
No 52
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.22 E-value=0.95 Score=55.05 Aligned_cols=65 Identities=25% Similarity=0.250 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 450 RIEKIEQLENDLNLSEKEVDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIAL 514 (1051)
Q Consensus 450 ~~~~i~~le~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~ 514 (1051)
+......|+.+.....+++.+++..+...++.+..|..+.+.+....+....+...|...+....
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~ 219 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEAR 219 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555555555544444444444444444444444444444444443333
No 53
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.15 E-value=1.5 Score=55.92 Aligned_cols=157 Identities=18% Similarity=0.237 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-hhhhH-HH---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001572 406 KAVLLKDLYLEIERMKEDVRAARDKNGVYVP-HERYA-QE---EAEKKARIEKIEQLENDLNLSEKEVDRFRELYLTEQE 480 (1051)
Q Consensus 406 k~~lik~l~~EI~~Lk~eL~~~r~~~g~~~~-~e~~~-~~---e~e~~~~~~~i~~le~~l~~~~~el~~l~~~~~~~~~ 480 (1051)
++.-|..|...|..|..++..++...+.... ++... +. ......++.++..+..++..++.++..++..+.....
T Consensus 236 Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~ 315 (775)
T PF10174_consen 236 KDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEE 315 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555667777777788888888776654332 22221 12 2223445677888888888888888888777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHhHHHHHH
Q 001572 481 QKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEF-------IISKLLCSEKSIIEQAKELRNELQNASEDIT 553 (1051)
Q Consensus 481 ~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~-------~~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~ 553 (1051)
...+...-+..++..|........-|+.+...+...+.++.. .+..+..-...+......|++.++.....+.
T Consensus 316 ~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~ 395 (775)
T PF10174_consen 316 QDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKIN 395 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665555555555555444444444 4444444344455556667777777777777
Q ss_pred HHHHHHhhH
Q 001572 554 SLFSKLDQK 562 (1051)
Q Consensus 554 ~l~~kl~rk 562 (1051)
.|+.+|+..
T Consensus 396 ~Lq~kie~L 404 (775)
T PF10174_consen 396 VLQKKIENL 404 (775)
T ss_pred HHHHHHHHH
Confidence 777776543
No 54
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.12 E-value=0.76 Score=52.15 Aligned_cols=102 Identities=25% Similarity=0.368 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCC--hhhhHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001572 410 LKDLYLEIERMKEDVRAARDKNGVYVP--HERYAQEEAEKKARIEK-------IEQLENDLNLSEKEVDRFRELYLTEQE 480 (1051)
Q Consensus 410 ik~l~~EI~~Lk~eL~~~r~~~g~~~~--~e~~~~~e~e~~~~~~~-------i~~le~~l~~~~~el~~l~~~~~~~~~ 480 (1051)
++.|..+...|..+|...+.+.|...+ ...|. .+...+... ...++.++.....++.+++..|.....
T Consensus 20 Vr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye---~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~ 96 (312)
T PF00038_consen 20 VRFLEQENKRLESEIEELREKKGEEVSRIKEMYE---EELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELA 96 (312)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHhcccccCcccccchh---hHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 466777888888888877776443222 22222 222222222 223444444555556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 481 QKLDLESELKECKINLENRSKALLDLQEKHMIAL 514 (1051)
Q Consensus 481 ~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~ 514 (1051)
....++.++..+.+.++.......+++..+..+.
T Consensus 97 ~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~ 130 (312)
T PF00038_consen 97 ERKDLEEELESLRKDLDEETLARVDLENQIQSLK 130 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHH
Confidence 6666666666666666655555555555554443
No 55
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.10 E-value=1.2 Score=54.00 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001572 477 TEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEFIISKLLCSEKSIIEQAKELRNELQNASEDITSLF 556 (1051)
Q Consensus 477 ~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~ 556 (1051)
.....+..+..+|+.++.+++..+.++..++.+...++..+..+....+.+...+. .-.+|..++.....++++|.
T Consensus 284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~----Er~~l~r~l~~i~~~~d~l~ 359 (581)
T KOG0995|consen 284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNL----ERNKLKRELNKIQSELDRLS 359 (581)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666666666666666666655555444333333332221 12344444444455555555
Q ss_pred HHHh
Q 001572 557 SKLD 560 (1051)
Q Consensus 557 ~kl~ 560 (1051)
.++.
T Consensus 360 k~vw 363 (581)
T KOG0995|consen 360 KEVW 363 (581)
T ss_pred HHHH
Confidence 5544
No 56
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.04 E-value=2.3 Score=56.36 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhhhHHHH
Q 001572 451 IEKIEQLENDLNLSEKEV 468 (1051)
Q Consensus 451 ~~~i~~le~~l~~~~~el 468 (1051)
..+++.+...+.....++
T Consensus 680 ~~~l~~l~~~l~~l~~~~ 697 (1164)
T TIGR02169 680 RERLEGLKRELSSLQSEL 697 (1164)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444443333333333
No 57
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.92 E-value=2.9 Score=55.54 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhHHhHHHhHHHhHHhhHhhHHHhhHHHH
Q 001572 770 DALEKIAVILANLTSRKTAMVSKASSNIQDTNIQQNKRLQ 809 (1051)
Q Consensus 770 ~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 809 (1051)
.-.+.|..++.....++......+...++......=..|-
T Consensus 1000 ~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~~~l~ 1039 (1164)
T TIGR02169 1000 EERKAILERIEEYEKKKREVFMEAFEAINENFNEIFAELS 1039 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555666666677777777777777776665544443
No 58
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.79 Score=56.67 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 001572 537 QAKELRNELQNASEDITSLFSKL 559 (1051)
Q Consensus 537 ~~~~L~~~l~~~~~d~~~l~~kl 559 (1051)
++...+.++.++...|..++.||
T Consensus 480 q~e~~isei~qlqarikE~q~kl 502 (1118)
T KOG1029|consen 480 QRELMISEIDQLQARIKELQEKL 502 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554
No 59
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.87 E-value=2.1 Score=53.19 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHH
Q 001572 725 MDFFNDIHRQASKLKTILEESQTE---KSKELDNFKKTF 760 (1051)
Q Consensus 725 ~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~ 760 (1051)
..--.++..+...|+..+-|.... .+.++.+|+++-
T Consensus 322 h~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkr 360 (1265)
T KOG0976|consen 322 HLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKR 360 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 333344555556666333333221 566666666654
No 60
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=2.7 Score=53.70 Aligned_cols=39 Identities=18% Similarity=0.399 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001572 691 SLSQQKELLALSAQQQEEGLQRSWISSQEISKATMDFFNDIH 732 (1051)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1051)
.-...+.-+..+-+.-++.+.+++ +.|.+....+|++|-
T Consensus 1009 Dk~kI~ktI~~lDe~k~~~L~kaw---~~VN~dFG~IFs~LL 1047 (1174)
T KOG0933|consen 1009 DKSKIKKTIEKLDEKKREELNKAW---EKVNKDFGSIFSTLL 1047 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHhC
Confidence 333444445555666666777666 445555566666553
No 61
>PRK03918 chromosome segregation protein; Provisional
Probab=96.81 E-value=3 Score=54.07 Aligned_cols=17 Identities=41% Similarity=0.743 Sum_probs=13.1
Q ss_pred CCCceeeeccCCCCCcccee
Q 001572 129 GFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 129 G~N~TIfAYGqTGSGKTyTM 148 (1051)
|+|+ -+|++|||||..|
T Consensus 24 g~~~---i~G~nG~GKStil 40 (880)
T PRK03918 24 GINL---IIGQNGSGKSSIL 40 (880)
T ss_pred CcEE---EEcCCCCCHHHHH
Confidence 5544 7899999998764
No 62
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.68 E-value=4.9 Score=54.72 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 001572 408 VLLKDLYLEIERMKEDVRAARD 429 (1051)
Q Consensus 408 ~lik~l~~EI~~Lk~eL~~~r~ 429 (1051)
.-+..+..+|..+...+..+..
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~ 492 (1311)
T TIGR00606 471 DRILELDQELRKAERELSKAEK 492 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666655444
No 63
>PRK11637 AmiB activator; Provisional
Probab=96.65 E-value=1.7 Score=51.90 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 001572 412 DLYLEIERMKEDV 424 (1051)
Q Consensus 412 ~l~~EI~~Lk~eL 424 (1051)
.+..+++.++.++
T Consensus 44 ~~~~~l~~l~~qi 56 (428)
T PRK11637 44 DNRDQLKSIQQDI 56 (428)
T ss_pred hhHHHHHHHHHHH
Confidence 4444555555444
No 64
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.64 E-value=5.3 Score=54.64 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=24.8
Q ss_pred hhhhHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh
Q 001572 839 EDTFSAAESRAIMENSLQECSKTVDSSRQQWEYAQSYIRNL 879 (1051)
Q Consensus 839 e~~~~~~~~~~~m~~~lq~~~~~~~~~~~~~~~~~~~~~~l 879 (1051)
+-...-...+.-|+.-+-.|.+.+++--.|-+.-|..+..+
T Consensus 1092 e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~ 1132 (1822)
T KOG4674|consen 1092 EQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEEL 1132 (1822)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455666666666666666666666666666666
No 65
>PRK11637 AmiB activator; Provisional
Probab=96.54 E-value=2.7 Score=50.12 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001572 409 LLKDLYLEIERMKEDVR 425 (1051)
Q Consensus 409 lik~l~~EI~~Lk~eL~ 425 (1051)
-++++..+|..++.++.
T Consensus 48 ~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVR 64 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35556666666666554
No 66
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.53 E-value=6.2 Score=54.04 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=20.2
Q ss_pred HHHHhHhhhHHHHhh-hccchhhHhhhhhhhhhh
Q 001572 944 ITTICLDQLKFVQEK-HGENLSTIRNQAEKCFTK 976 (1051)
Q Consensus 944 ~~~~~~~~l~~l~~~-h~~~~~~I~~~a~~~l~~ 976 (1051)
....|...+.-|..+ |...+.+++.....|-..
T Consensus 876 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a 909 (1486)
T PRK04863 876 ALNRLLPRLNLLADETLADRVEEIREQLDEAEEA 909 (1486)
T ss_pred HHHHhchhhhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 333444444445444 888888888877766543
No 67
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.43 E-value=3 Score=49.32 Aligned_cols=102 Identities=13% Similarity=0.166 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 411 KDLYLEIERMKEDVRAARDKNGVYVPHERYAQEEAEKKARIEKIEQLENDLNLSEKEVDRFRELYLTEQEQKLDLESELK 490 (1051)
Q Consensus 411 k~l~~EI~~Lk~eL~~~r~~~g~~~~~e~~~~~e~e~~~~~~~i~~le~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~ 490 (1051)
..+..+|++||.++..+ .+.-.+..++.++|+.++............+..-......+..+.-..++
T Consensus 267 ~~i~~~i~~lk~~n~~l-------------~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~ 333 (622)
T COG5185 267 HIINTDIANLKTQNDNL-------------YEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLE 333 (622)
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHH
Confidence 34566677777654322 22222334445555555544443333333333333344444444455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001572 491 ECKINLENRSKALLDLQEKHMIALSTLKKKEFIIS 525 (1051)
Q Consensus 491 ~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~ 525 (1051)
+++.+++..+.++..|+++...+..++..+..-.+
T Consensus 334 kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e 368 (622)
T COG5185 334 KLKSEIELKEEEIKALQSNIDELHKQLRKQGISTE 368 (622)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHH
Confidence 66666666666666666666655555544443333
No 68
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.37 E-value=5.8 Score=51.95 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001572 406 KAVLLKDLYLEIERMKEDVRAAR 428 (1051)
Q Consensus 406 k~~lik~l~~EI~~Lk~eL~~~r 428 (1051)
.+.+.++|.+.|.+++.+...++
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~ 485 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQ 485 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777776665554
No 69
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.34 E-value=4.5 Score=50.34 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001572 723 ATMDFFNDIHRQASKLKTILEES 745 (1051)
Q Consensus 723 ~~~~~~~~~~~~~~~l~~~~~~~ 745 (1051)
..-..+-.|++..+.|.+.++++
T Consensus 551 kaYK~La~lh~~c~~Li~~v~~t 573 (594)
T PF05667_consen 551 KAYKLLASLHENCSQLIETVEET 573 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666666666676666655
No 70
>PRK02224 chromosome segregation protein; Provisional
Probab=96.29 E-value=6 Score=51.38 Aligned_cols=10 Identities=20% Similarity=0.255 Sum_probs=5.2
Q ss_pred hcccCCCCCC
Q 001572 978 YMVDQHTSTT 987 (1051)
Q Consensus 978 Y~~~ept~~T 987 (1051)
|..|+|++..
T Consensus 815 ~ilDEp~~~l 824 (880)
T PRK02224 815 LILDEPTVFL 824 (880)
T ss_pred eEecCCcccC
Confidence 4555555443
No 71
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=5.1 Score=50.02 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=17.6
Q ss_pred hhHhhhhhhhhhhhhcccCCCCCCCCcccC
Q 001572 964 STIRNQAEKCFTKDYMVDQHTSTTPKKRAI 993 (1051)
Q Consensus 964 ~~I~~~a~~~l~~eY~~~ept~~TP~k~~~ 993 (1051)
-+|+++++ -|=.-|..--|.+.||.--.+
T Consensus 733 Gel~gktG-WFPenyvEki~~~e~p~~v~P 761 (1118)
T KOG1029|consen 733 GELRGKTG-WFPENYVEKIPAVETPGGVPP 761 (1118)
T ss_pred ceeccccC-cCcHHHHhhcccCCCCCCCCc
Confidence 34555555 355567666677777765544
No 72
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.04 E-value=6.9 Score=49.66 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=19.6
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001572 679 SEGKEVIEDIKNSLSQQKELLALSAQQQEEGL 710 (1051)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1051)
++|+.=++.++..|..+..++..+...+.+.+
T Consensus 625 g~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 625 GDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777666666655544433
No 73
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.00 E-value=3.3 Score=45.62 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001572 443 EEAEKKARIEKIEQLENDLNLSEKEV 468 (1051)
Q Consensus 443 ~e~e~~~~~~~i~~le~~l~~~~~el 468 (1051)
.+.+...+..+|..++..++..+..+
T Consensus 34 aE~e~~~l~rri~~lE~~le~~eerL 59 (237)
T PF00261_consen 34 AEAEVASLQRRIQLLEEELERAEERL 59 (237)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34444455555555555554444333
No 74
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.96 E-value=11 Score=51.13 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=12.5
Q ss_pred eeeccCCCCCcccee
Q 001572 134 VFAYGQTGTGKTYTM 148 (1051)
Q Consensus 134 IfAYGqTGSGKTyTM 148 (1051)
+-.+|-.|+|||+.|
T Consensus 20 t~i~GTNG~GKTTlL 34 (1201)
T PF12128_consen 20 THICGTNGVGKTTLL 34 (1201)
T ss_pred eeeecCCCCcHHHHH
Confidence 445799999999987
No 75
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.84 E-value=13 Score=51.14 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=13.8
Q ss_pred eeeeccCCCCCccceec
Q 001572 133 TVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 133 TIfAYGqTGSGKTyTM~ 149 (1051)
++.-+|++|+|||.+|-
T Consensus 29 ~~~l~G~NGaGKSTll~ 45 (1486)
T PRK04863 29 VTTLSGGNGAGKSTTMA 45 (1486)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 44567999999999885
No 76
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.80 E-value=4.6 Score=45.81 Aligned_cols=15 Identities=40% Similarity=0.459 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 001572 444 EAEKKARIEKIEQLE 458 (1051)
Q Consensus 444 e~e~~~~~~~i~~le 458 (1051)
+.+.+.+..+|..+.
T Consensus 24 E~~N~~Le~~i~~~~ 38 (312)
T PF00038_consen 24 EQENKRLESEIEELR 38 (312)
T ss_dssp HHHHHHHHHHHHH--
T ss_pred HHHhhhhHHHHHHHH
Confidence 334444444444333
No 77
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.65 E-value=9.7 Score=48.43 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhHHhHHHhHHH--hHHhhHhhHHHhhHHHHHhhhHH
Q 001572 768 EKDALEKIAVILANLTSRKTAMVSK--ASSNIQDTNIQQNKRLQNEISSV 815 (1051)
Q Consensus 768 ~~~~~~~i~~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ 815 (1051)
-..|++-|..||-.+..-|++.|.. ......+....++.--++=+|+-
T Consensus 793 ct~lm~aI~~Lv~as~~lQ~EIVasgrgsas~~eFY~kNsrWTEGLISAa 842 (980)
T KOG0980|consen 793 CTALMEAIMALVKASRELQTEIVASGRGSASPNEFYKKNSRWTEGLISAA 842 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcCchhHHHHHHH
Confidence 3578999999999999999999998 66677777776665555555544
No 78
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.40 E-value=5.5 Score=43.89 Aligned_cols=10 Identities=30% Similarity=0.650 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 001572 623 LESRIKRMSE 632 (1051)
Q Consensus 623 ~~~~i~~~~~ 632 (1051)
+..+|..+..
T Consensus 174 ~e~~i~~L~~ 183 (237)
T PF00261_consen 174 YEEKIRDLEE 183 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334433333
No 79
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.15 E-value=14 Score=47.13 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=14.4
Q ss_pred CcccCCCCChhhHhhhcCc
Q 001572 989 KKRAITVPSLASIEEMRTP 1007 (1051)
Q Consensus 989 ~k~~~~vPs~~sIe~lRt~ 1007 (1051)
-.|.|++|+.+-|+.||+.
T Consensus 886 ~eriye~d~~~p~~~lr~s 904 (1243)
T KOG0971|consen 886 SERIYETDSSSPYECLRQS 904 (1243)
T ss_pred hhhhccCCccchHHHHHHH
Confidence 3567788888778888876
No 80
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.06 E-value=10 Score=45.08 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 487 SELKECKINLENRSKALLDLQEKH 510 (1051)
Q Consensus 487 ~~l~~~~~~l~~~~~~l~~l~~~~ 510 (1051)
.+|.++...+....+.+.++...+
T Consensus 80 ~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 80 AQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHhHHHHHHhhHHHHHHHH
Confidence 333333333333333333333333
No 81
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=94.98 E-value=4.4 Score=48.31 Aligned_cols=79 Identities=14% Similarity=0.187 Sum_probs=48.4
Q ss_pred CCCcceeEEeecCCCCCChHhhHHHHHHHHHhhhcc--cccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCh
Q 001572 360 GGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIK--NKPEANQKMSKAVLLKDLYLEIERMKEDVRAARDKNGVYVPH 437 (1051)
Q Consensus 360 GGnskT~mIatISPs~~~~eETLsTL~fA~RAk~Ik--nkp~vN~~~~k~~lik~l~~EI~~Lk~eL~~~r~~~g~~~~~ 437 (1051)
.+++..+-|..-+|++.-...-++++-=+....++. +....+...--...+.++..++......|...+.++|++.+.
T Consensus 128 ~~~s~ii~is~~~~dp~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~ 207 (444)
T TIGR03017 128 SRESSVISIEFSGVDPRFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSD 207 (444)
T ss_pred cCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 466788888888888887777777654333332222 211111111112335677777788888888889999988665
Q ss_pred h
Q 001572 438 E 438 (1051)
Q Consensus 438 e 438 (1051)
+
T Consensus 208 ~ 208 (444)
T TIGR03017 208 E 208 (444)
T ss_pred c
Confidence 4
No 82
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.74 E-value=15 Score=45.59 Aligned_cols=28 Identities=7% Similarity=0.133 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHH
Q 001572 867 QQWEYAQSYIRNLNTSSTAEIKSAIKENI 895 (1051)
Q Consensus 867 ~~~~~~~~~~~~l~~~~~~~~~~~v~~~~ 895 (1051)
.........++. +..||.+++.-+..+.
T Consensus 455 ~~i~~l~~~L~~-g~VNm~ai~~e~~e~~ 482 (569)
T PRK04778 455 DEIEALAEELEE-KPINMEAVNRLLEEAT 482 (569)
T ss_pred HHHHHHHHHhcc-CCCCHHHHHHHHHHHH
Confidence 344555666777 7888888884444333
No 83
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.54 E-value=5.8 Score=42.26 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 001572 413 LYLEIERMKEDVR 425 (1051)
Q Consensus 413 l~~EI~~Lk~eL~ 425 (1051)
|..+|..|+.++.
T Consensus 41 L~~e~~~L~~q~~ 53 (193)
T PF14662_consen 41 LAEEITDLRKQLK 53 (193)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 84
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.53 E-value=13 Score=45.00 Aligned_cols=78 Identities=14% Similarity=0.216 Sum_probs=43.2
Q ss_pred CCCcceeEEeecCCCCCChHhhHHHHHHHHHhhhccccccccccc--CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCh
Q 001572 360 GGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQKM--SKAVLLKDLYLEIERMKEDVRAARDKNGVYVPH 437 (1051)
Q Consensus 360 GGnskT~mIatISPs~~~~eETLsTL~fA~RAk~Iknkp~vN~~~--~k~~lik~l~~EI~~Lk~eL~~~r~~~g~~~~~ 437 (1051)
.|++..+=|..-+|++.-...-.+++-=+..-..+..+-...... --..-+.+++.+++....+|...+.++|+..+.
T Consensus 118 ~~~s~vi~Is~~~~dP~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~ 197 (498)
T TIGR03007 118 AGRDNLFTISYEDKDPELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPD 197 (498)
T ss_pred cCCCCeEEEEeeCCCHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 356677777778888887777777652222111111111100000 001224566677777777777888889887654
No 85
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.41 E-value=15 Score=43.90 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001572 450 RIEKIEQLENDLNLSEKEVDRFRELYL 476 (1051)
Q Consensus 450 ~~~~i~~le~~l~~~~~el~~l~~~~~ 476 (1051)
+-.++++|..+++.+++++..|++...
T Consensus 328 ~~g~l~kl~~eie~kEeei~~L~~~~d 354 (622)
T COG5185 328 WPGKLEKLKSEIELKEEEIKALQSNID 354 (622)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344556666666666666665555443
No 86
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.28 E-value=19 Score=44.72 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001572 695 QKELLALSAQQQEEGLQRSWISSQEISKATMDFFNDIHRQASKLKTILEESQTEKSK 751 (1051)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 751 (1051)
++++...|..++...-++..+.-+..+ ....-.+++.+.+..|...+.+....+.+
T Consensus 709 lraE~~~l~~~le~e~nr~~~~~~e~~-~~qeE~~~l~~r~~~le~e~r~~k~~~~q 764 (961)
T KOG4673|consen 709 LRAEQGQLSKSLEKERNRAAENRQEYL-AAQEEADTLEGRANQLEVEIRELKRKHKQ 764 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666655555554433332 23333455555555555544444333333
No 87
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.93 E-value=21 Score=43.87 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=12.6
Q ss_pred eeeeccCCCCCcccee
Q 001572 133 TVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 133 TIfAYGqTGSGKTyTM 148 (1051)
..+-+|++|+|||..+
T Consensus 29 ~~~i~G~NG~GKStll 44 (562)
T PHA02562 29 KTLITGKNGAGKSTML 44 (562)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4456899999998755
No 88
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=26 Score=44.50 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001572 533 SIIEQAKELRNELQNASEDITSLFSK 558 (1051)
Q Consensus 533 ~l~~~~~~L~~~l~~~~~d~~~l~~k 558 (1051)
.+...-..+..++++...++..+.++
T Consensus 748 ~l~~~q~~l~~~L~k~~~~~es~k~~ 773 (970)
T KOG0946|consen 748 KLENDQELLTKELNKKNADIESFKAT 773 (970)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333444444454444555444444
No 89
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.74 E-value=29 Score=44.97 Aligned_cols=121 Identities=18% Similarity=0.188 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 001572 618 DATHILESRIKRMSETYTAGLELLKELDNSM---QKKASSDMEQISSKVSSQTMAVEQFLVTMVSEGKEVIEDIKNSLSQ 694 (1051)
Q Consensus 618 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 694 (1051)
+...++..+|+..+..+.....++..+.... +++-......+ .....++--|++.+..+-.+=..++..|++....
T Consensus 481 ~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qy-e~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t 559 (1195)
T KOG4643|consen 481 AETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQY-ELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT 559 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4455566666666655554444433332222 22211111111 1333455556666655556656666666554332
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 001572 695 QKELLALSAQQQEEGLQRSWISSQEISKATMDFFNDIHRQASKLK-TILEES 745 (1051)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ 745 (1051)
.+....|-+.- -.++..-..-+.+++-|+.+..|...|+ +++++.
T Consensus 560 -~qn~~~LEq~~-----n~lE~~~~elkk~idaL~alrrhke~LE~e~mnQq 605 (1195)
T KOG4643|consen 560 -SQNGALLEQNN-----NDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQ 605 (1195)
T ss_pred -hHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 11111111111 1122222223355666667777777777 555533
No 90
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.69 E-value=8.5 Score=38.62 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001572 452 EKIEQLENDLNLSEKEVDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKK 520 (1051)
Q Consensus 452 ~~i~~le~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~ 520 (1051)
.++..+..++....+.....+..|..+.....+.-..|..++.++...+..+..++.....+...+...
T Consensus 24 ~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~ 92 (132)
T PF07926_consen 24 EQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEES 92 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666667777888887777777778888888888888888888877777766555443
No 91
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.63 E-value=26 Score=44.02 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=19.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001572 524 ISKLLCSEKSIIEQAKELRNELQNASEDITSLFSKL 559 (1051)
Q Consensus 524 ~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl 559 (1051)
+++-...+..|-.+..+|.+......+|...|-++|
T Consensus 155 ~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~l 190 (617)
T PF15070_consen 155 ASRALSQNRELKEQLAELQDAFVKLTNENMELTSAL 190 (617)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHH
Confidence 333344445555566666665555555554444444
No 92
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.56 E-value=20 Score=45.33 Aligned_cols=99 Identities=20% Similarity=0.178 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 001572 468 VDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEFIISKLLCSEKSIIEQAKELRNELQN 547 (1051)
Q Consensus 468 l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~~~~~e~~l~~~~~~L~~~l~~ 547 (1051)
+..|+..-...+.+..+....++.++.+-+++-+.++...++..+....+++++.. +.+..+...-...+++-++++
T Consensus 429 l~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~---l~~~kq~~d~e~~rik~ev~e 505 (861)
T PF15254_consen 429 LFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQE---LLENKQQFDIETTRIKIEVEE 505 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555566666666667777776667777653 334444555677889999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q 001572 548 ASEDITSLFSKLDQKDRMEAENQSL 572 (1051)
Q Consensus 548 ~~~d~~~l~~kl~rk~~~~~~n~~~ 572 (1051)
+...+..++-||+ ..+.+|..+
T Consensus 506 al~~~k~~q~kLe---~sekEN~iL 527 (861)
T PF15254_consen 506 ALVNVKSLQFKLE---ASEKENQIL 527 (861)
T ss_pred HHHHHHHHhhhHH---HHHhhhhHh
Confidence 9999999999986 345566544
No 93
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.54 E-value=16 Score=41.40 Aligned_cols=125 Identities=15% Similarity=0.202 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH---HHHHHHHHHHHHHHHHHHh---HHHHHHHHHHhHHH
Q 001572 621 HILESRIKRMSETYTAGLELLKELDNSMQKKASSDMEQISS---KVSSQTMAVEQFLVTMVSE---GKEVIEDIKNSLSQ 694 (1051)
Q Consensus 621 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~ 694 (1051)
+-|..++.++...+.+.=-.++..+..+.+.+ ..++.+.. .....+.-|+..+..-... +-.=-+.+...|..
T Consensus 147 e~LsQqLskaesK~nsLe~elh~trdaLrEKt-L~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~Q 225 (305)
T PF14915_consen 147 EILSQQLSKAESKFNSLEIELHHTRDALREKT-LALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQ 225 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333444444444332 12222222 2233445566666553222 22334567788889
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 001572 695 QKELLALSAQQQEEGLQRSWISSQEISKATM---DFFNDIHRQASKLKTILEESQ 746 (1051)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~ 746 (1051)
.+.+...+.+|+..+.....-.-+.|...-. +.|.+|..+..+=.-++++.-
T Consensus 226 lqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErN 280 (305)
T PF14915_consen 226 LQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERN 280 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999877644444544333 335555555555444455443
No 94
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=93.39 E-value=15 Score=40.62 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001572 621 HILESRIKRMSETYTAGLELLKELDNSMQKKASSDMEQISSKVSSQTMAVEQFLVT 676 (1051)
Q Consensus 621 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 676 (1051)
..+..+|..-+..-...+..|.+....+........+.+...|...+.+|.+.|..
T Consensus 160 ~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~ 215 (247)
T PF06705_consen 160 NRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALAL 215 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555555555666666666666666665544
No 95
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.39 E-value=33 Score=44.53 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=44.7
Q ss_pred chhhhhhhhhhHHHHhHHHhHhhhhhhhhhHHHHHhHhhhHHHHhhhccchhhHhhhhhhhhhhhhcccCCCCC
Q 001572 913 DMDFGAKAGDIVVSVNDLLMRDRESKMEIDSITTICLDQLKFVQEKHGENLSTIRNQAEKCFTKDYMVDQHTST 986 (1051)
Q Consensus 913 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~h~~~~~~I~~~a~~~l~~eY~~~ept~~ 986 (1051)
.-.|.-+-=.||.-||.+|++-|. -+|-.|+++|..+-.-+=- +-=.+.=+||..-|...+++--.||.
T Consensus 1099 mL~fkPAPlYILDEVDAALDLSHT--QNIG~mIkthF~~sQFIVV---SLKeGMF~NANvLFrtrF~DG~Stv~ 1167 (1174)
T KOG0933|consen 1099 MLKFKPAPLYILDEVDAALDLSHT--QNIGRMIKTHFTHSQFIVV---SLKEGMFNNANVLFRTRFVDGVSTVQ 1167 (1174)
T ss_pred HHcCCCCceeehhhhHHhhcchhh--hhHHHHHHhhCCCCeEEEE---EchhhccccchhhheeeeecCceeee
Confidence 346777888999999999988886 3566688887654332100 01124556788888777775555443
No 96
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.10 E-value=0.12 Score=61.82 Aligned_cols=93 Identities=22% Similarity=0.418 Sum_probs=56.0
Q ss_pred eeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchh----HHHHH
Q 001572 97 RVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIP----RAVRQ 172 (1051)
Q Consensus 97 k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIp----Ral~~ 172 (1051)
..|..-.-|.|.-+|-. ++..+|+.+-.|.-.-+ -.|.|||||||||----.. ...|-+|- -...+
T Consensus 3 ~~F~l~s~f~PaGDQP~----AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~-----~~rPtLV~AhNKTLAaQ 72 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE----AIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAK-----VQRPTLVLAHNKTLAAQ 72 (663)
T ss_pred CceEeccCCCCCCCcHH----HHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHH-----hCCCeEEEecchhHHHH
Confidence 45777777888888854 45667777666654433 4599999999999531000 00111111 12345
Q ss_pred HHHHHhh--cccCcccEEEEEEEEccccc
Q 001572 173 IFDTLEA--QNADYSMKVSFLELYNEDIT 199 (1051)
Q Consensus 173 LF~~le~--~~~~~sV~vS~lEIYnE~v~ 199 (1051)
||..+.. .+..+...|||+..|.-+-|
T Consensus 73 Ly~Efk~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 73 LYSEFKEFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHHHHHHhCcCcceEEEeeeccccCcccc
Confidence 6655544 23355677899999876533
No 97
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.05 E-value=30 Score=43.07 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=45.3
Q ss_pred hhHHHHHhhhHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHH---HhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhh
Q 001572 804 QNKRLQNEISSVQQVSTDARKELSKYIQNVESHFMEDTFSA---AESRAIMENSLQECSKTVDSSRQQWEYAQSYIRNLN 880 (1051)
Q Consensus 804 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~~~~~---~~~~~~m~~~lq~~~~~~~~~~~~~~~~~~~~~~l~ 880 (1051)
.+..|+.++.+-..-.++.+.+.+.|-+.++..--.-+..- ..-|...+.-||..+-+|..-.+.....+.+..+|.
T Consensus 712 E~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~lq~~ll~ve~~~k~~e~~~~~~~~le 791 (961)
T KOG4673|consen 712 EQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQELQEVLLHVELIQKDLEREKASRLDLE 791 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhCHHHHhhcc
Confidence 33455555555555556667777777555443221111111 111334444677777778777777778888888886
Q ss_pred cc
Q 001572 881 TS 882 (1051)
Q Consensus 881 ~~ 882 (1051)
++
T Consensus 792 rs 793 (961)
T KOG4673|consen 792 RS 793 (961)
T ss_pred cc
Confidence 64
No 98
>PRK09039 hypothetical protein; Validated
Probab=92.91 E-value=23 Score=41.33 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=8.9
Q ss_pred eecCCCCCChHhhHHHHHH
Q 001572 369 ATISPSAHSLEETMSTLDY 387 (1051)
Q Consensus 369 atISPs~~~~eETLsTL~f 387 (1051)
+.|+|. |=+.|+||-+
T Consensus 13 ~~~wpg---~vd~~~~ll~ 28 (343)
T PRK09039 13 VDYWPG---FVDALSTLLL 28 (343)
T ss_pred CCCCch---HHHHHHHHHH
Confidence 456665 3445666654
No 99
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.81 E-value=20 Score=40.32 Aligned_cols=25 Identities=8% Similarity=0.235 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Q 001572 551 DITSLFSKLDQKDRMEAENQSLVLS 575 (1051)
Q Consensus 551 d~~~l~~kl~rk~~~~~~n~~~~~~ 575 (1051)
..+.+.+++.--..+-.-++.++..
T Consensus 128 SfsD~IsRvtAi~~iv~aDk~ile~ 152 (265)
T COG3883 128 SFSDLISRVTAISVIVDADKKILEQ 152 (265)
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444444444333444444444333
No 100
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.76 E-value=0.047 Score=59.14 Aligned_cols=51 Identities=25% Similarity=0.466 Sum_probs=30.3
Q ss_pred eeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 97 RVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 97 k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
..|+||.-+.... ++..|.. +..+.+.--..|| .+|-||++|+||||.|.+
T Consensus 3 ~~~tFdnfv~g~~-N~~a~~~-~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 3 PKYTFDNFVVGES-NELAYAA-AKAIAENPGERYN-PLFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp TT-SCCCS--TTT-THHHHHH-HHHHHHSTTTSSS-EEEEEESTTSSHHHHHHH
T ss_pred CCCccccCCcCCc-HHHHHHH-HHHHHhcCCCCCC-ceEEECCCCCCHHHHHHH
Confidence 4699999765433 4555543 3444443112234 478899999999998753
No 101
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.63 E-value=32 Score=42.27 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001572 410 LKDLYLEIERMKEDVRAARD 429 (1051)
Q Consensus 410 ik~l~~EI~~Lk~eL~~~r~ 429 (1051)
+.++..|+..++.+|..++.
T Consensus 118 l~e~~~El~~l~~~l~~l~~ 137 (511)
T PF09787_consen 118 LQELDQELRRLRRQLEELQN 137 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888743
No 102
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.53 E-value=35 Score=42.49 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 452 EKIEQLENDLNLSEKEVDRFRELYLTEQEQKLDLESELKECKINL 496 (1051)
Q Consensus 452 ~~i~~le~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l 496 (1051)
+.|...+.++......+..|.+.-.........+....+.+++.+
T Consensus 112 ~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~l 156 (569)
T PRK04778 112 SLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSL 156 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444443334444444333333334444444444444444
No 103
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=92.36 E-value=21 Score=39.53 Aligned_cols=67 Identities=13% Similarity=0.300 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHhHHHhHH
Q 001572 725 MDFFNDIHRQASKLKTILEESQTEKSKELDNFKKTFKEEAAKE-------EKDALEKIAVILANLTSRKTAMVS 791 (1051)
Q Consensus 725 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~ll~~~~~~~~~~~~ 791 (1051)
...++.|.++...+...++.........+.+|....++..... +..+++.|+.|-+.......++..
T Consensus 149 ~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~ 222 (247)
T PF06705_consen 149 ENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQ 222 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467777788888888888777777777777777766655433 234777787777766666555543
No 104
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.35 E-value=38 Score=42.45 Aligned_cols=11 Identities=45% Similarity=0.603 Sum_probs=6.2
Q ss_pred CcCCCCchhhh
Q 001572 344 IPYRDSKLTRL 354 (1051)
Q Consensus 344 IPYRdSKLTrL 354 (1051)
.+||.-|..++
T Consensus 239 ~e~~~~K~~~l 249 (594)
T PF05667_consen 239 EEYRKRKQQRL 249 (594)
T ss_pred hhhhHHHHHHH
Confidence 45666655554
No 105
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.15 E-value=19 Score=38.66 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001572 410 LKDLYLEIERMKEDVRAAR 428 (1051)
Q Consensus 410 ik~l~~EI~~Lk~eL~~~r 428 (1051)
|++|..+|..+...+..++
T Consensus 14 i~~L~n~l~elq~~l~~l~ 32 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELR 32 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554443
No 106
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.07 E-value=42 Score=42.40 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=13.7
Q ss_pred eeeeccCCCCCccceec
Q 001572 133 TVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 133 TIfAYGqTGSGKTyTM~ 149 (1051)
+++-||+.|+|||..|-
T Consensus 30 ~~~i~G~Ng~GKttll~ 46 (650)
T TIGR03185 30 IILIGGLNGAGKTTLLD 46 (650)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45578999999998773
No 107
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.99 E-value=54 Score=43.43 Aligned_cols=73 Identities=11% Similarity=0.216 Sum_probs=39.2
Q ss_pred HHHHHhhhHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHH-------HHHHHhhhhhhhHHHHHHHHHHHh
Q 001572 806 KRLQNEISSVQQVSTDARKELSKYIQNVESHFMEDTFSAAESRAIMENS-------LQECSKTVDSSRQQWEYAQSYIRN 878 (1051)
Q Consensus 806 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~m~~~-------lq~~~~~~~~~~~~~~~~~~~~~~ 878 (1051)
..++.++..+|..+.- +..+..+-.+.+.=+.+-+-...++...+.+= |-.|.-....+......+|..+..
T Consensus 868 e~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~ 946 (1293)
T KOG0996|consen 868 EELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSE 946 (1293)
T ss_pred HHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHH
Confidence 4566666666633332 46677776676766666665554443333333 334444445554455555555555
Q ss_pred h
Q 001572 879 L 879 (1051)
Q Consensus 879 l 879 (1051)
+
T Consensus 947 l 947 (1293)
T KOG0996|consen 947 L 947 (1293)
T ss_pred H
Confidence 4
No 108
>PRK06893 DNA replication initiation factor; Validated
Probab=91.97 E-value=0.095 Score=57.05 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=33.5
Q ss_pred CeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 96 DRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 96 ~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
...++||..++.... . .+.-+...+-.++|..++-||++|+||||.+.+
T Consensus 10 ~~~~~fd~f~~~~~~-~-----~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 10 IDDETLDNFYADNNL-L-----LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CCcccccccccCChH-H-----HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 356899999965532 1 122222333357888899999999999998854
No 109
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.91 E-value=26 Score=44.97 Aligned_cols=76 Identities=21% Similarity=0.148 Sum_probs=44.7
Q ss_pred CCcceeEEeecCCCCCChHhhHHHHHHHHHhhhccccccccccc--CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 001572 361 GKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQKM--SKAVLLKDLYLEIERMKEDVRAARDKNGVYVP 436 (1051)
Q Consensus 361 GnskT~mIatISPs~~~~eETLsTL~fA~RAk~Iknkp~vN~~~--~k~~lik~l~~EI~~Lk~eL~~~r~~~g~~~~ 436 (1051)
+.+..+-|..-+|++.-...-++++-=+....++..+-...... --...+.+++.+++....++...+.++|+..+
T Consensus 152 ~~s~ii~Is~~~~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~ 229 (754)
T TIGR01005 152 EKTRIIAIEFRSEDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG 229 (754)
T ss_pred CccEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 45677778888888877777777765444444433332222110 01122445666666666677778888888754
No 110
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=91.83 E-value=26 Score=39.41 Aligned_cols=41 Identities=24% Similarity=0.429 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 001572 575 SFGSQLDQSLKGLHKTILGSVSQQQQQLRCMEEHAQSFLASK 616 (1051)
Q Consensus 575 ~f~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 616 (1051)
-|..+|.+ ++.+...+...+..|...+..+......|....
T Consensus 194 lf~~eL~k-~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~ 234 (296)
T PF13949_consen 194 LFEEELKK-FDPLQNRIQQNLSKQEELLQEIQEANEEFAQSR 234 (296)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444 444555566666666666666666666665444
No 111
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=91.69 E-value=41 Score=41.48 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=24.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 460 DLNLSEKEVDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQE 508 (1051)
Q Consensus 460 ~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~ 508 (1051)
+|...++++.++++.+..-.....+...+|...+..+++++..|.....
T Consensus 35 eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~ 83 (522)
T PF05701_consen 35 ELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQA 83 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555544443344444555565555555555555544443
No 112
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.65 E-value=39 Score=41.17 Aligned_cols=73 Identities=22% Similarity=0.250 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 444 EAEKKARIEKIEQLENDLNLSEKEVDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALST 516 (1051)
Q Consensus 444 e~e~~~~~~~i~~le~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~ 516 (1051)
+.+.+.+.++|..+...+..++.++..+++-..+.......+.++|..++..|+..+.+..+++..+.++...
T Consensus 337 ~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~ 409 (654)
T KOG4809|consen 337 RKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNI 409 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455667788888887777777778888887777777777788888888888888888888888888777543
No 113
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=91.60 E-value=44 Score=41.61 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhhHHHHHhh
Q 001572 866 RQQWEYAQSYIRNLNTSSTAEIKSAIKENISANQTAHEEFK 906 (1051)
Q Consensus 866 ~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~n~~~~~~~~ 906 (1051)
..........|+.. ..+|..|...+..+.+.=+.+..+..
T Consensus 450 ~~~i~~l~~~L~~~-pinm~~v~~~l~~a~~~v~~L~~~t~ 489 (560)
T PF06160_consen 450 SDEIEELSDELNQV-PINMDEVNKQLEEAEDDVETLEEKTE 489 (560)
T ss_pred HHHHHHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555 66666666666655555444444443
No 114
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.55 E-value=61 Score=43.15 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=7.4
Q ss_pred eccCCCCCccceeccC
Q 001572 136 AYGQTGTGKTYTMEGG 151 (1051)
Q Consensus 136 AYGqTGSGKTyTM~G~ 151 (1051)
..+..|+=-+-+-.|+
T Consensus 224 km~~dG~V~s~~aVGT 239 (1317)
T KOG0612|consen 224 KMDADGTVRSSVAVGT 239 (1317)
T ss_pred hcCCCCcEEeccccCC
Confidence 3344444444455554
No 115
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.18 E-value=28 Score=38.63 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 001572 533 SIIEQAKELRNELQNASEDITSLFSKLD 560 (1051)
Q Consensus 533 ~l~~~~~~L~~~l~~~~~d~~~l~~kl~ 560 (1051)
.|.+....+.+.++.....+..+..++.
T Consensus 107 ~le~el~~l~~~~~~l~~~i~~l~~~~~ 134 (239)
T COG1579 107 SLEDELAELMEEIEKLEKEIEDLKERLE 134 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555544
No 116
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=91.18 E-value=40 Score=40.39 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 001572 593 GSVSQQQQQLRCMEEHAQSFLASKCDATHILESRIKRMS 631 (1051)
Q Consensus 593 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 631 (1051)
.-.+.+.+++-+++.+++.+-....+.++.|+.++.++-
T Consensus 485 rEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLv 523 (527)
T PF15066_consen 485 REKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLV 523 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344566677777788877777777777777777776553
No 117
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.13 E-value=30 Score=38.89 Aligned_cols=40 Identities=8% Similarity=0.133 Sum_probs=14.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 461 LNLSEKEVDRFRELYLTEQEQKLDLESELKECKINLENRS 500 (1051)
Q Consensus 461 l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~ 500 (1051)
++..+.++.++.......+.++.++..++.+++.++..++
T Consensus 54 i~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 54 IESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 118
>PRK09039 hypothetical protein; Validated
Probab=91.09 E-value=36 Score=39.72 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Q 001572 450 RIEKIEQLENDLNLSEKEVDRFREL 474 (1051)
Q Consensus 450 ~~~~i~~le~~l~~~~~el~~l~~~ 474 (1051)
+...|..+..+++..+.+...++..
T Consensus 79 l~~~l~~l~~~l~~a~~~r~~Le~~ 103 (343)
T PRK09039 79 LQDSVANLRASLSAAEAERSRLQAL 103 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444444444444433
No 119
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.89 E-value=22 Score=45.46 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=6.4
Q ss_pred ceEEEEEeCCCC
Q 001572 52 NVQVLLRCRPLS 63 (1051)
Q Consensus 52 nVkV~vRvRP~~ 63 (1051)
...+.||.-|..
T Consensus 126 ~~~i~Crt~~v~ 137 (717)
T PF10168_consen 126 KKEINCRTVPVD 137 (717)
T ss_pred CcceeEEEEEec
Confidence 345566655553
No 120
>PLN02939 transferase, transferring glycosyl groups
Probab=90.80 E-value=68 Score=42.32 Aligned_cols=101 Identities=15% Similarity=0.128 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-----HHHHHHHH-HHHHHHHHHHHHHHhh
Q 001572 578 SQLDQSLKGLHKTILGSVSQQQQQLRCMEEHAQSFLASKCDATHILESRI-----KRMSETYT-AGLELLKELDNSMQKK 651 (1051)
Q Consensus 578 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~-~~~~~~~~~~~~~~~~ 651 (1051)
..++++++.++.++..+..+...+++.+++.+..|........++-+++. .+|.-.+- ..+=.|+.+.-.- ..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~~~~~-~~ 432 (977)
T PLN02939 354 ELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGWLLEK-KI 432 (977)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHHHHhc-cC
Confidence 44678888888888888888888888888888887776665443333322 22222222 2333344432211 11
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 652 ASSDMEQISSKVSSQTMAVEQFLVTMVS 679 (1051)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 679 (1051)
+...-..+...|..+-..|-+++..+..
T Consensus 433 ~~~~a~~lr~~~~~~~~~~~~~~~~~~~ 460 (977)
T PLN02939 433 SNNDAKLLREMVWKRDGRIREAYLSCKG 460 (977)
T ss_pred ChhhHHHHHHHHHhhhhhHHHHHHHHhc
Confidence 2233345566777777777776665544
No 121
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=90.77 E-value=51 Score=40.90 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 001572 602 LRCMEEHAQSFLASKCDATHILESRIKRMSETYTAGLELLKELDNSMQKKASSDMEQISSK 662 (1051)
Q Consensus 602 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (1051)
+..+..+++..-....+..+.|+.+|..+...+......+.++.++++.. +..+++...
T Consensus 294 i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~--sDYeeIK~E 352 (629)
T KOG0963|consen 294 IAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR--SDYEEIKKE 352 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccHHHHHHH
Confidence 33344444444455556677777788777777777777777777776655 455555443
No 122
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=90.71 E-value=75 Score=42.69 Aligned_cols=16 Identities=0% Similarity=0.111 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 001572 411 KDLYLEIERMKEDVRA 426 (1051)
Q Consensus 411 k~l~~EI~~Lk~eL~~ 426 (1051)
..+-+++.+++++|..
T Consensus 75 ~~ap~~~~~~~~~l~~ 90 (1109)
T PRK10929 75 DNFPKLSAELRQQLNN 90 (1109)
T ss_pred HHhHHHHHHHHHHHHh
Confidence 3444444555555543
No 123
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=90.31 E-value=71 Score=41.75 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=31.8
Q ss_pred CCChHhhHHHHHHHHHhhhcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 001572 375 AHSLEETMSTLDYAYRAKNIKNKPEANQKMSKAVLLKDLYLEIERMKEDVRAARDKNGVYV 435 (1051)
Q Consensus 375 ~~~~eETLsTL~fA~RAk~Iknkp~vN~~~~k~~lik~l~~EI~~Lk~eL~~~r~~~g~~~ 435 (1051)
..+++.|+.+|+-- ++.. .... -.|...+.++..||+.|+.++..+|...+-++
T Consensus 172 ~~hL~velAdle~k--ir~L--rqEl---EEK~enll~lr~eLddleae~~klrqe~~e~l 225 (1195)
T KOG4643|consen 172 NLHLEVELADLEKK--IRTL--RQEL---EEKFENLLRLRNELDDLEAEISKLRQEIEEFL 225 (1195)
T ss_pred hHHHHHHHHHHHHH--HHHH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888777531 1111 1111 12445677888888888888887777655443
No 124
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=90.20 E-value=52 Score=40.08 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=20.5
Q ss_pred HHhHHHhHHHhHHhhHhhHHHhhHHHHHhhhHHHHHhhHHHHHHH
Q 001572 783 TSRKTAMVSKASSNIQDTNIQQNKRLQNEISSVQQVSTDARKELS 827 (1051)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 827 (1051)
.+-|...+..++..++.-..+.-....+.+...|..+....+.+.
T Consensus 374 ld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~ 418 (531)
T PF15450_consen 374 LDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQ 418 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555544444444444444444444444444443
No 125
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.20 E-value=48 Score=39.64 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHH
Q 001572 487 SELKECKINLENRSKALLDLQEKHMIALSTLKK-KEFIISKLLCSEKSIIEQAKELRNELQNASEDITSLFSKLDQKD 563 (1051)
Q Consensus 487 ~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e-~~~~~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl~rk~ 563 (1051)
+-|+++...|..+.+.+.++..........+.+ +.++.+.+.. +.-.+.+ ...+++..+|+.++-+.+.++.
T Consensus 293 ayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~----~e~e~~e-~~~IqeleqdL~a~~eei~~~e 365 (521)
T KOG1937|consen 293 AYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKN----LETEDEE-IRRIQELEQDLEAVDEEIESNE 365 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----ccchHHH-HHHHHHHHHHHHHHHHHHHhhH
Confidence 345555555555555555554443333333322 2233332222 2223344 5566667777777766666553
No 126
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.05 E-value=17 Score=38.43 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=8.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 001572 538 AKELRNELQNASEDITSLFSKL 559 (1051)
Q Consensus 538 ~~~L~~~l~~~~~d~~~l~~kl 559 (1051)
+..++..+.....+...+..++
T Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~ 181 (191)
T PF04156_consen 160 VQELRSQLERLQENLQQLEEKI 181 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444443333333333333
No 127
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.97 E-value=28 Score=44.63 Aligned_cols=31 Identities=10% Similarity=0.058 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 615 SKCDATHILESRIKRMSETYTAGLELLKELD 645 (1051)
Q Consensus 615 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 645 (1051)
.......+|+......++.|...++...+..
T Consensus 373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 373 EQQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777777777777777777666654
No 128
>PRK06620 hypothetical protein; Validated
Probab=89.40 E-value=0.18 Score=54.55 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=33.7
Q ss_pred CeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCc---eeeeccCCCCCccceecc
Q 001572 96 DRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNC---TVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 96 ~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~---TIfAYGqTGSGKTyTM~G 150 (1051)
...|+||..+...+. ...|..+. .+.+. -|+|. .+|-||++|+||||.+..
T Consensus 10 ~~~~tfd~Fvvg~~N-~~a~~~~~-~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 10 SSKYHPDEFIVSSSN-DQAYNIIK-NWQCG--FGVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCCchhhEecccH-HHHHHHHH-HHHHc--cccCCCcceEEEECCCCCCHHHHHHH
Confidence 356899997766654 44665432 23221 14543 489999999999999853
No 129
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=89.02 E-value=70 Score=39.86 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhh
Q 001572 867 QQWEYAQSYIRNL 879 (1051)
Q Consensus 867 ~~~~~~~~~~~~l 879 (1051)
.+|..+...|..|
T Consensus 472 ~~l~~a~~~v~~L 484 (560)
T PF06160_consen 472 KQLEEAEDDVETL 484 (560)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 130
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=88.96 E-value=13 Score=44.79 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCChhh--hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 410 LKDLYLEIERMKEDVRAARDKNGVYVPHER--YAQEEAEKKARIEKIEQLENDLNLSEKEVDRFRELYLTEQEQKLDLES 487 (1051)
Q Consensus 410 ik~l~~EI~~Lk~eL~~~r~~~g~~~~~e~--~~~~e~e~~~~~~~i~~le~~l~~~~~el~~l~~~~~~~~~~~~~l~~ 487 (1051)
++.+..|+.+|+.+...++...-+|...++ |..-..+.+....++.-+.+.+..+-+++....+..-....++.++++
T Consensus 168 Lk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qk 247 (596)
T KOG4360|consen 168 LKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQK 247 (596)
T ss_pred cCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 345556667776666555544433332222 212222333334444444444444444444443333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001572 488 ELKECKINLENRSKALLDLQEKHMIALSTLKKKEFIISKLLCSEKSIIEQAKELRNELQNASEDITSLFSK 558 (1051)
Q Consensus 488 ~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~k 558 (1051)
++..+..+.++....|........+. .....++.+.-.++...+.++..|+..|+.+
T Consensus 248 k~k~~~~Ekeel~~~Lq~~~da~~ql--------------~aE~~EleDkyAE~m~~~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 248 KIKYLRHEKEELDEHLQAYKDAQRQL--------------TAELEELEDKYAECMQMLHEAEEELKCLRSC 304 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 33333332222222222222222222 2222233444445555566666666666655
No 131
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=88.85 E-value=51 Score=38.03 Aligned_cols=57 Identities=14% Similarity=0.271 Sum_probs=26.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 685 IEDIKNSLSQQKELLALSAQQQEEGLQRSWISSQEISKATMDFFNDIHRQASKLKTILEES 745 (1051)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 745 (1051)
|+++++.|..-.+-...|..+...... .++.+.+.+..+-.+.+..-..|..++++.
T Consensus 225 f~efq~tL~kSNe~F~tfk~Emekm~K----k~kklEKE~~~~k~k~e~~n~~l~~m~eer 281 (309)
T PF09728_consen 225 FEEFQDTLNKSNEVFETFKKEMEKMSK----KIKKLEKENQTWKSKWEKSNKALIEMAEER 281 (309)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334444444445555555554443332 223334444445555544445555555544
No 132
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.79 E-value=38 Score=36.57 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 001572 597 QQQQQLRCMEEHAQSFLAS 615 (1051)
Q Consensus 597 ~~~~~l~~~~~~~~~~~~~ 615 (1051)
.....+...+..+..++..
T Consensus 154 ~l~~~lE~keaqL~evl~~ 172 (201)
T PF13851_consen 154 ALSEQLEKKEAQLNEVLAA 172 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 133
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=88.65 E-value=34 Score=42.24 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001572 449 ARIEKIEQLENDLNLSEKEVDRFRELYL-------TEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKE 521 (1051)
Q Consensus 449 ~~~~~i~~le~~l~~~~~el~~l~~~~~-------~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~ 521 (1051)
+..++|..||-.++.+..++....+.+. ...-++.+|-.++-.++-++...+++-.+.++++...+..+.+-.
T Consensus 136 aQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 136 AQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN 215 (861)
T ss_pred HhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence 3456777777666665554433222221 223345566666666666666666666666666555554444432
Q ss_pred HH-----HHHHHhhHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHhhHHHH
Q 001572 522 FI-----ISKLLCSEKSIIE---QAKELRNELQNASEDITSLFSKLDQKDRM 565 (1051)
Q Consensus 522 ~~-----~~~~~~~e~~l~~---~~~~L~~~l~~~~~d~~~l~~kl~rk~~~ 565 (1051)
++ ..+-.+.+..|.+ ...-|++.+.+...|+..|+.++-++-..
T Consensus 216 ~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~ 267 (861)
T KOG1899|consen 216 QSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMA 267 (861)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhh
Confidence 21 1111111222211 23445555666666666677666555433
No 134
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.55 E-value=0.23 Score=56.07 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=27.9
Q ss_pred hhhHHHHhhcCCCceeeeccCCCCCccceec
Q 001572 119 IVPIVNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 119 v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
+.|++..+++--++.|+.-|+||||||.||-
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 5568888999999999999999999999983
No 135
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.34 E-value=40 Score=36.20 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 001572 466 KEVDRFRELYL 476 (1051)
Q Consensus 466 ~el~~l~~~~~ 476 (1051)
.++.+++..+.
T Consensus 43 ~e~~~L~~q~~ 53 (193)
T PF14662_consen 43 EEITDLRKQLK 53 (193)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 136
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.07 E-value=67 Score=38.48 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 001572 480 EQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEFIISKLLC 529 (1051)
Q Consensus 480 ~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~~~~ 529 (1051)
++...|+.+|..++.++..+...+.+++..+......|..-+..+.++..
T Consensus 59 ~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 59 DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 33344455555555555555555555555555554444444444444433
No 137
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=87.96 E-value=1e+02 Score=40.53 Aligned_cols=122 Identities=18% Similarity=0.242 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 001572 578 SQLDQSLKGLHKTILG-SVSQQQQQLRCMEEHAQSFLASKCDATHILESRIKRMSETYTAGLELLKELDNSMQKKASSDM 656 (1051)
Q Consensus 578 ~~l~~~l~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (1051)
..|.++|..++..+.. .+.+..+++..++ .++-+...+++..+..+.+. ..-++.+++.+=+....+...+
T Consensus 1163 EkLE~qLq~~~~kL~dAyl~eitKqIsaLe-------~e~PKnltdvK~missf~d~-laeiE~LrnErIKkHGaSkePL 1234 (1439)
T PF12252_consen 1163 EKLEKQLQVIHTKLYDAYLVEITKQISALE-------KEKPKNLTDVKSMISSFNDR-LAEIEFLRNERIKKHGASKEPL 1234 (1439)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-------hhCCCchhhHHHHHHHHHhh-hhHHHHHHHHHhhccCCCCCcc
Confidence 5567777776665432 2333333433333 22333444666666666443 2333444444333222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001572 657 EQISSKVSSQTMAVEQFLVTM-VSEGKEVIEDIKNSLSQQKELLALSAQQQEEGLQRSWIS 716 (1051)
Q Consensus 657 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1051)
+ .+++..+..-|+.+ ...+..+++++..+|...+ ...| ++|....+..++.
T Consensus 1235 D------lSDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme--~~tf-~~q~~eiq~n~~l 1286 (1439)
T PF12252_consen 1235 D------LSDLDKLKGQLQKINQNLVKALINTIRVSLNQME--VKTF-EEQEKEIQQNLQL 1286 (1439)
T ss_pred c------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhh-hhhhHHHHHHHHH
Confidence 1 13444444444443 2334667778887877775 3444 3444445545544
No 138
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.87 E-value=1e+02 Score=40.34 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHhHHHhH
Q 001572 761 KEEAAKEEKDALEKIAVILANLTSRKTAMVSKAS 794 (1051)
Q Consensus 761 ~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~ 794 (1051)
+....+|+++|-..|+.+.....+.++.|-.+.-
T Consensus 469 Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~ 502 (1200)
T KOG0964|consen 469 RKELWREEKKLRSLIANLEEDLSRAEKNLRATMN 502 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556788889999999998888888888776644
No 139
>PRK12377 putative replication protein; Provisional
Probab=87.84 E-value=0.31 Score=54.00 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=36.6
Q ss_pred eEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 98 VFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 98 ~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
..+||........|..++.. +..++..+..+. ..++-||++|+||||.+.+
T Consensus 70 ~~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred cCCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 34788765555566667754 566777766654 4688899999999999865
No 140
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.69 E-value=1.1e+02 Score=40.46 Aligned_cols=56 Identities=27% Similarity=0.358 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhC----CCCCc---CCCCchhhhhhhccCCCcceeEEeecCCCCCChHhhHHHHHHHH
Q 001572 327 LLTLGRVINALVEH----SAHIP---YRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAY 389 (1051)
Q Consensus 327 L~aLg~VI~aL~~~----~~hIP---YRdSKLTrLLqdSLGGnskT~mIatISPs~~~~eETLsTL~fA~ 389 (1051)
..+-..||.-|.+. -+++| -|..+++.=|+ -+|| . -+.|-.|.+.+ |--..+.||.
T Consensus 539 e~ta~~CI~ylKeqr~~~~TFlPld~i~v~~~~e~lr-~~~g-~-rlv~Dvi~ye~----e~eka~~~a~ 601 (1141)
T KOG0018|consen 539 EATARDCIQYLKEQRLEPMTFLPLDSIRVKPVNEKLR-ELGG-V-RLVIDVINYEP----EYEKAVQFAC 601 (1141)
T ss_pred HHHHHHHHHHHHHhccCCccccchhhhhcCccccccc-CcCC-e-EEEEEecCCCH----HHHHHHHHHh
Confidence 34556777777764 36777 57778887787 4555 3 34444555444 3334455544
No 141
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=87.54 E-value=62 Score=37.49 Aligned_cols=103 Identities=20% Similarity=0.290 Sum_probs=58.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001572 523 IISKLLCSEKSIIEQAKELRNELQNASEDITSLFSKLDQKDRMEAENQSLVLSFGSQLDQSLKGLHKTILGSVSQQQQQL 602 (1051)
Q Consensus 523 ~~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl~rk~~~~~~n~~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~l 602 (1051)
++......+..|......|+..+.++..|+--|..++.+.......- .. ..|- .-+..+....+....+.
T Consensus 73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~-~~-~~~~--------~ere~lV~qLEk~~~q~ 142 (319)
T PF09789_consen 73 LLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGI-GA-RHFP--------HEREDLVEQLEKLREQI 142 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccc-cc-cccc--------hHHHHHHHHHHHHHHHH
Confidence 44555556777888888999999999999999999887654332111 11 1111 11111222334445555
Q ss_pred HHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHH
Q 001572 603 RCMEEHAQSFLASKCDA---THILESRIKRMSETYT 635 (1051)
Q Consensus 603 ~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~ 635 (1051)
..++.++++.++.+.+. ++..+.++..++..+.
T Consensus 143 ~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn 178 (319)
T PF09789_consen 143 EQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELN 178 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666655543 3445555555555443
No 142
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=87.33 E-value=68 Score=37.74 Aligned_cols=58 Identities=22% Similarity=0.233 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHhhCCCCCcCCCCchhhhhhhccCC-CcceeEEeecCCCCCChHhhHHHHHHH
Q 001572 325 KSLLTLGRVINALVEHSAHIPYRDSKLTRLLRDSLGG-KTKTCIIATISPSAHSLEETMSTLDYA 388 (1051)
Q Consensus 325 kSL~aLg~VI~aL~~~~~hIPYRdSKLTrLLqdSLGG-nskT~mIatISPs~~~~eETLsTL~fA 388 (1051)
.+.+.||.||..+.++-.. +--| .| | ..||= .-.|.+|.||=...---.-||.-|=.+
T Consensus 7 ~~vlvLgGVIA~~gD~ig~---kvGk-ar-L-rlF~LRPkqTAvlvtvltG~liSA~tLailf~~ 65 (499)
T COG4372 7 PFVLVLGGVIAYAGDTIGK---KVGK-AR-L-RLFGLRPKQTAVLVTVLTGMLISAATLAILFLL 65 (499)
T ss_pred HHHHHHHhHHHHHhhHHHh---hhhH-HH-H-hHhccCcccceeehhhhhcchhhHHHHHHHHHh
Confidence 3578899999999874110 0000 00 0 01221 345677777655444444555555443
No 143
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=87.23 E-value=60 Score=37.04 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 001572 413 LYLEIERMKEDVRAARDK 430 (1051)
Q Consensus 413 l~~EI~~Lk~eL~~~r~~ 430 (1051)
|+.||..||.++...+..
T Consensus 4 Lq~eia~LrlEidtik~q 21 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQ 21 (305)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 577888888888766543
No 144
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.11 E-value=1.2e+02 Score=40.20 Aligned_cols=71 Identities=20% Similarity=0.262 Sum_probs=41.5
Q ss_pred cCCCcceeEEeecCCCCCChHhhHHHHHHHHHhhhccccc----ccccccCHH--HHHH------HHHHHHHHHHHHHHH
Q 001572 359 LGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKP----EANQKMSKA--VLLK------DLYLEIERMKEDVRA 426 (1051)
Q Consensus 359 LGGnskT~mIatISPs~~~~eETLsTL~fA~RAk~Iknkp----~vN~~~~k~--~lik------~l~~EI~~Lk~eL~~ 426 (1051)
.+|.+-+.+|-.-.-+...|-+.|..+.+--+|+++--.. .|-...++. .+.. +|..|.++|+.+...
T Consensus 92 I~~G~seY~IDne~VT~eeY~~eLekinIlVkARNFLVFQGdVE~IA~k~PkElt~LFEEISgSiElK~EYeelK~E~~k 171 (1141)
T KOG0018|consen 92 INGGTSEYMIDNEIVTREEYLEELEKINILVKARNFLVFQGDVEKIAGKNPKELTALFEEISGSIELKPEYEELKYEMAK 171 (1141)
T ss_pred hcCCceeEEEcceeccHHHHHHHHhhcceeeeeeeEEEecChHHHHhccCHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 3455667777776666777778888888888888764332 111121221 1111 556677777777655
Q ss_pred HHh
Q 001572 427 ARD 429 (1051)
Q Consensus 427 ~r~ 429 (1051)
+-+
T Consensus 172 AE~ 174 (1141)
T KOG0018|consen 172 AEE 174 (1141)
T ss_pred HHH
Confidence 443
No 145
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=87.09 E-value=0.32 Score=60.15 Aligned_cols=52 Identities=27% Similarity=0.448 Sum_probs=34.9
Q ss_pred CeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 96 DRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 96 ~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
...|+||..+.... +..+|. .+..+++..-.+||. ||-||.+|+||||.+.+
T Consensus 282 ~~~~TFDnFvvG~s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 282 NPKYTFDTFVIGAS-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCCHhhhcCCCc-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 45799998664333 334553 344455543446776 89999999999998854
No 146
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.91 E-value=5.8 Score=42.35 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Q 001572 410 LKDLYLEIERMKEDVRAARDKNG 432 (1051)
Q Consensus 410 ik~l~~EI~~Lk~eL~~~r~~~g 432 (1051)
+..+...+..++.||..+....|
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~ 91 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKG 91 (194)
T ss_dssp -----------------------
T ss_pred ccccccccccccccccccccccc
Confidence 44555566677777766555444
No 147
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.80 E-value=44 Score=38.63 Aligned_cols=8 Identities=13% Similarity=0.156 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 001572 551 DITSLFSK 558 (1051)
Q Consensus 551 d~~~l~~k 558 (1051)
.+..+...
T Consensus 247 ~k~e~~~~ 254 (312)
T smart00787 247 KKSELNTE 254 (312)
T ss_pred HHHHHHHH
Confidence 33333333
No 148
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=86.67 E-value=45 Score=37.51 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 622 ILESRIKRMSETYTAGLELLKELD 645 (1051)
Q Consensus 622 ~~~~~i~~~~~~~~~~~~~~~~~~ 645 (1051)
....+..+++..|...+++-+.+.
T Consensus 159 ~~~sk~e~L~ekynkeveerkrle 182 (307)
T PF10481_consen 159 YSDSKYEELQEKYNKEVEERKRLE 182 (307)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhHH
Confidence 455677777777777766654443
No 149
>PRK05642 DNA replication initiation factor; Validated
Probab=86.66 E-value=0.5 Score=51.74 Aligned_cols=48 Identities=17% Similarity=0.428 Sum_probs=30.0
Q ss_pred CeeEecCcccCCCcchhhhhhhhhhhHHHHhhc---CC-CceeeeccCCCCCccceecc
Q 001572 96 DRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLD---GF-NCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 96 ~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~---G~-N~TIfAYGqTGSGKTyTM~G 150 (1051)
...|+||.-+... +. .+...+....+ ++ ...++-||++|+||||.+.+
T Consensus 13 ~~~~tfdnF~~~~--~~-----~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 13 RDDATFANYYPGA--NA-----AALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CCcccccccCcCC--hH-----HHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence 3468999977432 22 23333333322 22 24688999999999998753
No 150
>PHA02562 46 endonuclease subunit; Provisional
Probab=86.66 E-value=89 Score=38.40 Aligned_cols=30 Identities=7% Similarity=0.067 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 484 DLESELKECKINLENRSKALLDLQEKHMIA 513 (1051)
Q Consensus 484 ~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~ 513 (1051)
++++++..+..+....+.++..++.++...
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 151
>PRK06526 transposase; Provisional
Probab=86.50 E-value=0.3 Score=54.26 Aligned_cols=45 Identities=29% Similarity=0.304 Sum_probs=29.1
Q ss_pred cCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 101 FDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 101 FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
||.-+.+..++..+..-...+.++ .|.| |+.||++|+||||.+.+
T Consensus 73 fd~~~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 73 FDFDHQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred ccCccCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 343344555555555444444554 4555 78999999999999875
No 152
>PRK12704 phosphodiesterase; Provisional
Probab=86.48 E-value=43 Score=41.36 Aligned_cols=6 Identities=33% Similarity=0.578 Sum_probs=2.4
Q ss_pred HHHHHH
Q 001572 622 ILESRI 627 (1051)
Q Consensus 622 ~~~~~i 627 (1051)
+++.+|
T Consensus 220 ~mkgri 225 (520)
T PRK12704 220 EMKGRI 225 (520)
T ss_pred hhhcce
Confidence 344433
No 153
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=86.28 E-value=47 Score=34.85 Aligned_cols=75 Identities=25% Similarity=0.262 Sum_probs=38.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 432 GVYVPHERYAQEEAEKKARIEKIEQLENDLNLSEKEVDRFRELYLTE-------QEQKLDLESELKECKINLENRSKALL 504 (1051)
Q Consensus 432 g~~~~~e~~~~~e~e~~~~~~~i~~le~~l~~~~~el~~l~~~~~~~-------~~~~~~l~~~l~~~~~~l~~~~~~l~ 504 (1051)
|..+..-.|.+...+...+.++|++-. +++.+++..+... .++...+..++..++..|......+.
T Consensus 36 ge~L~~iDFeqLkien~~l~~kIeERn-------~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~ 108 (177)
T PF13870_consen 36 GEGLHLIDFEQLKIENQQLNEKIEERN-------KELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELA 108 (177)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777777666666665443 4444555444332 33333344444444445544444444
Q ss_pred HHHHHHHHH
Q 001572 505 DLQEKHMIA 513 (1051)
Q Consensus 505 ~l~~~~~~~ 513 (1051)
.+.+++..+
T Consensus 109 ~~r~~l~~~ 117 (177)
T PF13870_consen 109 KLREELYRV 117 (177)
T ss_pred HHHHHHHHH
Confidence 444444444
No 154
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.15 E-value=0.42 Score=57.39 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=27.0
Q ss_pred hhhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 119 IVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 119 v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
-...+..++..-++-|+.-|+||||||.||+.
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 34455677888899999999999999999985
No 155
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.15 E-value=1.4e+02 Score=40.02 Aligned_cols=55 Identities=13% Similarity=0.285 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhhHHHHHh
Q 001572 851 MENSLQECSKTVDSSRQQWEYAQSYIRNLNTSSTAEIKSAIKENISANQTAHEEF 905 (1051)
Q Consensus 851 m~~~lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~n~~~~~~~ 905 (1051)
|+.-||+|-....--...|..-++.+..+.-.+|.+..+.+.-....++.|..+.
T Consensus 1017 ~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~tE~~~~~~~~~~~~Eeleae~ 1071 (1293)
T KOG0996|consen 1017 IENKLEAINGELNEIESKIKQPEKELKKLSLCNMTETRPQIELDVESPEELEAEM 1071 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhhCccccccchhhccccccccCChHHHHhhh
Confidence 7888999988766666666666688888888888787888887788888887777
No 156
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.00 E-value=0.37 Score=57.74 Aligned_cols=51 Identities=24% Similarity=0.443 Sum_probs=33.6
Q ss_pred CeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 96 DRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 96 ~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
...|+||..+.. ..+...|..+ ..+... -..||. +|-||++|+||||.|.+
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCcccccccC-CchHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 457999987643 3355566543 333332 123675 99999999999998853
No 157
>PRK08116 hypothetical protein; Validated
Probab=85.78 E-value=0.39 Score=53.73 Aligned_cols=51 Identities=25% Similarity=0.368 Sum_probs=35.1
Q ss_pred eeEecCcccCCCcchhhhhhhhhhhHHHHhhc--CCCceeeeccCCCCCccceec
Q 001572 97 RVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLD--GFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 97 k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~--G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
+.++||... ....+...|.. +..+++.+.. +.|..++-||++||||||.+.
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred Hhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 457888754 34555556653 5666666543 345569999999999999885
No 158
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.62 E-value=43 Score=35.30 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 001572 488 ELKECKINLENRSKAL 503 (1051)
Q Consensus 488 ~l~~~~~~l~~~~~~l 503 (1051)
++..++.......+++
T Consensus 131 ~l~~l~~~~~~~~~e~ 146 (191)
T PF04156_consen 131 RLDSLDESIKELEKEI 146 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 159
>PRK11281 hypothetical protein; Provisional
Probab=85.56 E-value=1.5e+02 Score=40.03 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHH
Q 001572 764 AAKEEKDALEKIAVILANLTSRKTA 788 (1051)
Q Consensus 764 ~~~~~~~~~~~i~~ll~~~~~~~~~ 788 (1051)
....|++||+++..-+.+......+
T Consensus 408 ll~~r~~LL~~l~~~~~~~l~~~~~ 432 (1113)
T PRK11281 408 LLDERRELLDQLNKQLNNQLNLAIN 432 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777766655555444433
No 160
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.53 E-value=0.47 Score=51.91 Aligned_cols=49 Identities=10% Similarity=0.268 Sum_probs=31.4
Q ss_pred CeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 96 DRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 96 ~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
+..|+||..+.. .+...+.. +..+.. ......++-||++|+||||.+.+
T Consensus 16 ~~~~~fd~f~~~--~n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 16 PDDETFASFYPG--DNDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CCcCCccccccC--ccHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 346788876654 44555543 233322 22234789999999999999854
No 161
>PRK09087 hypothetical protein; Validated
Probab=85.52 E-value=0.43 Score=52.03 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=32.6
Q ss_pred CeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 96 DRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 96 ~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
...|+||..+...+. ..+|.. +.....-.+..++-||++||||||.+..
T Consensus 15 ~~~~~~~~Fi~~~~N-~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 15 DPAYGRDDLLVTESN-RAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CCCCChhceeecCch-HHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHHH
Confidence 346899998865543 336653 3332222355689999999999999853
No 162
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=85.40 E-value=1.3e+02 Score=39.07 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCC
Q 001572 409 LLKDLYLEIERMKEDVRAARDKNG 432 (1051)
Q Consensus 409 lik~l~~EI~~Lk~eL~~~r~~~g 432 (1051)
-+.++..|.++|+.++.....+.|
T Consensus 4 ql~~~q~E~e~L~~ele~~~~~l~ 27 (775)
T PF10174_consen 4 QLERLQRENERLRRELERKQSKLG 27 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 357888899999999987776654
No 163
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.05 E-value=49 Score=33.91 Aligned_cols=7 Identities=14% Similarity=0.321 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001572 623 LESRIKR 629 (1051)
Q Consensus 623 ~~~~i~~ 629 (1051)
|..++..
T Consensus 127 ~E~k~ee 133 (143)
T PF12718_consen 127 WEEKYEE 133 (143)
T ss_pred HHHHHHH
Confidence 3333333
No 164
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.73 E-value=82 Score=36.27 Aligned_cols=34 Identities=12% Similarity=0.421 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001572 617 CDATHILESRIKRMSETYTAGLELLKELDNSMQK 650 (1051)
Q Consensus 617 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 650 (1051)
......|...+.++++.|...+..+++..+.++.
T Consensus 268 ke~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 268 KESQRQLQAELQELQDKYAECMAMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567778888888888888888777666544
No 165
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.58 E-value=46 Score=33.23 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=24.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 613 LASKCDATHILESRIKRMSETYTAGLELL 641 (1051)
Q Consensus 613 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 641 (1051)
+..+.+..++|+.-|.++|++|..+++.|
T Consensus 91 lGEK~E~veEL~~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 91 LGEKSEEVEELRADVQDLKEMYREQIDQL 119 (120)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777889999999999999999998764
No 166
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=84.56 E-value=13 Score=39.59 Aligned_cols=84 Identities=29% Similarity=0.240 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhH
Q 001572 483 LDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEFIISKLLCSEKSIIEQAKELRNELQNASEDITSLFSKLDQK 562 (1051)
Q Consensus 483 ~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl~rk 562 (1051)
.+++.++......|......+..++.++......++++...++.+.+ ++....-....+.. +.
T Consensus 105 ~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~D--------------E~~~L~l~~~~~e~---k~ 167 (194)
T PF08614_consen 105 QELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQD--------------ELQALQLQLNMLEE---KL 167 (194)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH---HH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH---HH
Confidence 33444444444444444455555555555555555555444433332 22222222333333 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001572 563 DRMEAENQSLVLSFGSQLDQS 583 (1051)
Q Consensus 563 ~~~~~~n~~~~~~f~~~l~~~ 583 (1051)
.+++.+|+.+++.|-....+.
T Consensus 168 ~~l~~En~~Lv~Rwm~~k~~e 188 (194)
T PF08614_consen 168 RKLEEENRELVERWMQRKAQE 188 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567889999998886555443
No 167
>PRK07952 DNA replication protein DnaC; Validated
Probab=84.44 E-value=0.53 Score=52.09 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=34.0
Q ss_pred eeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 97 RVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 97 k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
...+||........|..++.. +..+++.+..|+ ..++-||.+|+||||.+.+
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred cCCccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 346777654444456666654 444555554443 3688999999999998865
No 168
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.38 E-value=59 Score=36.29 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 001572 411 KDLYLEIERMKEDV 424 (1051)
Q Consensus 411 k~l~~EI~~Lk~eL 424 (1051)
-+++.+|.+++.+.
T Consensus 23 ~~~~~~l~~~~~~~ 36 (302)
T PF10186_consen 23 LELRSELQQLKEEN 36 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555554443
No 169
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=84.31 E-value=0.57 Score=56.11 Aligned_cols=53 Identities=23% Similarity=0.421 Sum_probs=32.3
Q ss_pred cCeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 95 IDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 95 ~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
....|+||..... ..+...|.. +..+.+.--..|| .+|-||++|+||||.+..
T Consensus 115 l~~~~tfd~fv~g-~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 115 LNPKYTFDNFVVG-KSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCCcccccccC-CCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 3567899984422 234445543 3333333212344 478899999999998853
No 170
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=84.29 E-value=0.58 Score=55.23 Aligned_cols=52 Identities=23% Similarity=0.429 Sum_probs=31.5
Q ss_pred cCeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceec
Q 001572 95 IDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 95 ~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
.+..|+||.... ...+...|.. +..+...--..|| .+|-||++|+||||.+.
T Consensus 103 l~~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 103 LNPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 356799998442 2334445543 3333333111244 47889999999999884
No 171
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=84.26 E-value=1.3e+02 Score=38.11 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhhhhhhhhHHHhhHHHHHH
Q 001572 825 ELSKYIQNVESHFMEDTFSAAESRAIMEN 853 (1051)
Q Consensus 825 ~~~~~~~~~e~~~~e~~~~~~~~~~~m~~ 853 (1051)
.+..=|++-++.|++-..-.++.+.+.+.
T Consensus 411 aLq~amekLq~~f~~~~~e~adl~e~~e~ 439 (617)
T PF15070_consen 411 ALQEAMEKLQSRFMDLMEEKADLKERVEK 439 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33344666777777655555555444333
No 172
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.24 E-value=1.3e+02 Score=38.15 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHh
Q 001572 417 IERMKEDVRAARD 429 (1051)
Q Consensus 417 I~~Lk~eL~~~r~ 429 (1051)
+++|+.+|..+..
T Consensus 184 ~~~L~~dl~~~~~ 196 (650)
T TIGR03185 184 IDRLAGDLTNVLR 196 (650)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777765443
No 173
>PRK06835 DNA replication protein DnaC; Validated
Probab=84.03 E-value=0.42 Score=55.14 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=26.0
Q ss_pred hhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 113 SIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 113 ~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
.+++. +...++.+-.+. -.|+-||++|+||||.+.+
T Consensus 167 ~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 167 KILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 34433 455777766554 5699999999999998865
No 174
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=83.95 E-value=1.2e+02 Score=37.53 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001572 751 KELDNFKKTFKEEAAKEEKDALEKIAVILANLT 783 (1051)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~~~ 783 (1051)
.+|....+.++. ++..+...+++|..|..+-.
T Consensus 414 ~rL~aa~ke~ea-aKasEa~Ala~ik~l~e~~~ 445 (522)
T PF05701_consen 414 ERLEAALKEAEA-AKASEALALAEIKALSESES 445 (522)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccc
Confidence 344444444444 55566668888888655443
No 175
>PLN02939 transferase, transferring glycosyl groups
Probab=83.93 E-value=1.6e+02 Score=39.02 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhHHH--------hHHhhHhhHHHhhHHHHH
Q 001572 754 DNFKKTFKEEAAKEEKDALEKIAVILANLTSRKTAMVSK--------ASSNIQDTNIQQNKRLQN 810 (1051)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~ 810 (1051)
..+.+.|-++..+....+++..-.+..+.+....+.+-- +++.|-+.+..-..-|+.
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~ 513 (977)
T PLN02939 449 GRIREAYLSCKGKNEREAVENFLKLTLSGTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQK 513 (977)
T ss_pred hhHHHHHHHHhcCchHHHHHHHHHhccCCCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHH
Confidence 456678888888888889988888887766555554432 566777777666666654
No 176
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=83.54 E-value=70 Score=39.49 Aligned_cols=7 Identities=29% Similarity=0.515 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 001572 621 HILESRI 627 (1051)
Q Consensus 621 ~~~~~~i 627 (1051)
++++.+|
T Consensus 213 d~~kgri 219 (514)
T TIGR03319 213 DEMKGRI 219 (514)
T ss_pred hhhhccc
Confidence 3444444
No 177
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.02 E-value=75 Score=40.82 Aligned_cols=8 Identities=50% Similarity=0.845 Sum_probs=4.3
Q ss_pred hhhhhccC
Q 001572 353 RLLRDSLG 360 (1051)
Q Consensus 353 rLLqdSLG 360 (1051)
.+++|.||
T Consensus 446 ~il~D~lg 453 (717)
T PF10168_consen 446 AILSDVLG 453 (717)
T ss_pred EEecCCCC
Confidence 34566644
No 178
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=82.94 E-value=1.3e+02 Score=37.35 Aligned_cols=15 Identities=33% Similarity=0.683 Sum_probs=12.0
Q ss_pred eeccCCCCCccceec
Q 001572 135 FAYGQTGTGKTYTME 149 (1051)
Q Consensus 135 fAYGqTGSGKTyTM~ 149 (1051)
+-+|+||+|||-.|.
T Consensus 26 vitG~nGaGKS~ll~ 40 (563)
T TIGR00634 26 VLTGETGAGKSMIID 40 (563)
T ss_pred EEECCCCCCHHHHHH
Confidence 367999999987663
No 179
>PRK08727 hypothetical protein; Validated
Probab=82.94 E-value=0.71 Score=50.47 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=28.3
Q ss_pred eeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCC-ceeeeccCCCCCccceecc
Q 001572 97 RVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFN-CTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 97 k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N-~TIfAYGqTGSGKTyTM~G 150 (1051)
..|+||..+...+. .+.. +.+ +..|+. -.|+-||++|+||||.+.+
T Consensus 14 ~~~~f~~f~~~~~n---~~~~-~~~----~~~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 14 SDQRFDSYIAAPDG---LLAQ-LQA----LAAGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CcCChhhccCCcHH---HHHH-HHH----HHhccCCCeEEEECCCCCCHHHHHHH
Confidence 45789987754442 1211 112 222332 3599999999999998854
No 180
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=82.52 E-value=76 Score=34.22 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001572 615 SKCDATHILESRIKRMSETYTAGLELLKELDNSMQK 650 (1051)
Q Consensus 615 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 650 (1051)
.+.........++.++...+.....++..+..++++
T Consensus 154 ~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 154 SFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555444443
No 181
>PRK00106 hypothetical protein; Provisional
Probab=82.45 E-value=86 Score=38.88 Aligned_cols=148 Identities=20% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHhhhcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001572 389 YRAKNIKNKPEANQKMSKAVLLKDLYLEIERMKEDVRAARDKNGVYVPHERYAQEEAEKKARIEKIEQLENDLNLSEKEV 468 (1051)
Q Consensus 389 ~RAk~Iknkp~vN~~~~k~~lik~l~~EI~~Lk~eL~~~r~~~g~~~~~e~~~~~e~e~~~~~~~i~~le~~l~~~~~el 468 (1051)
..|+.|+......-..-......+...++.+.+.++ +.+.+....++.+.+..+..+++++
T Consensus 53 ~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~El-------------------Ekel~eEr~rL~qrE~rL~qREE~L 113 (535)
T PRK00106 53 RDAEHIKKTAKRESKALKKELLLEAKEEARKYREEI-------------------EQEFKSERQELKQIESRLTERATSL 113 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHhhHHHHHHHHHHHH
Q 001572 469 DRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTL------KKKEFIISKLLCSEKSIIEQAKELR 542 (1051)
Q Consensus 469 ~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l------~e~~~~~~~~~~~e~~l~~~~~~L~ 542 (1051)
.+-.+.+....+.....+.+|...+..++.....+.++..+.......+ .-++.+++++ +..+...+..+.
T Consensus 114 ekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~---~~~~~~~~~~~i 190 (535)
T PRK00106 114 DRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAET---ENKLTHEIATRI 190 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHH
Q 001572 543 NELQNASEDITSLFSK 558 (1051)
Q Consensus 543 ~~l~~~~~d~~~l~~k 558 (1051)
...+.....-....++
T Consensus 191 ~~~e~~a~~~a~~~a~ 206 (535)
T PRK00106 191 REAEREVKDRSDKMAK 206 (535)
T ss_pred HHHHHHHHHHHHHHHH
No 182
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.43 E-value=1.3e+02 Score=36.94 Aligned_cols=108 Identities=19% Similarity=0.284 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 001572 483 LDLESELKECKINLENRSKALLDLQEKHMIALST-LKKKEFIISKLLCSEKSIIEQAKELRNELQNASEDITSLFSKLDQ 561 (1051)
Q Consensus 483 ~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~-l~e~~~~~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl~r 561 (1051)
.+++.+++.+..+|+.++..+.+....++..... +...+-+++.-...|..+.....+|.+++.+....+...+...+|
T Consensus 53 eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~er 132 (772)
T KOG0999|consen 53 EELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENER 132 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555444322 223344555555556666666667777777766666666666655
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 562 KDRME---AENQSLVLSFGSQLDQSLKGLHKT 590 (1051)
Q Consensus 562 k~~~~---~~n~~~~~~f~~~l~~~l~~~~~~ 590 (1051)
..++. .++...+..-+..|.+.+.+++-+
T Consensus 133 l~~~~sd~~e~~~~~E~qR~rlr~elKe~KfR 164 (772)
T KOG0999|consen 133 LEKVHSDLKESNAAVEDQRRRLRDELKEYKFR 164 (772)
T ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Confidence 44332 223333444444555555555433
No 183
>PRK08939 primosomal protein DnaI; Reviewed
Probab=81.94 E-value=0.7 Score=52.82 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=33.7
Q ss_pred EecCcccCCCcchhhhhhhhhhhHHHHhhcC-CCceeeeccCCCCCccceecc
Q 001572 99 FTFDKVFGPKAQQRSIYDQAIVPIVNEVLDG-FNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 99 F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G-~N~TIfAYGqTGSGKTyTM~G 150 (1051)
.+||.+-.....+..++.. +..+++....| ....++-||++|+||||.+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 4566543333356666664 45666655543 334699999999999999965
No 184
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.76 E-value=66 Score=32.97 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhhHHHHHHHH
Q 001572 453 KIEQLENDLNLSEKEVDRFR 472 (1051)
Q Consensus 453 ~i~~le~~l~~~~~el~~l~ 472 (1051)
++..++......+.++..|+
T Consensus 22 ~~K~le~~~~~~E~EI~sL~ 41 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQ 41 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333343333
No 185
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=81.45 E-value=0.7 Score=46.90 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=20.4
Q ss_pred HHHHhhcC-CCceeeeccCCCCCccceecc
Q 001572 122 IVNEVLDG-FNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 122 lV~~vl~G-~N~TIfAYGqTGSGKTyTM~G 150 (1051)
+++.+-.+ .+..++..|+||||||++|.+
T Consensus 15 i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 15 IINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 44433333 356677788999999999975
No 186
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=81.43 E-value=1.7 Score=50.98 Aligned_cols=26 Identities=42% Similarity=0.663 Sum_probs=18.7
Q ss_pred HHHhhcCCC-ceeeeccCCCCCcccee
Q 001572 123 VNEVLDGFN-CTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 123 V~~vl~G~N-~TIfAYGqTGSGKTyTM 148 (1051)
+..++.|.- ..++.||.||||||.|+
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 334444443 34999999999999877
No 187
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=81.24 E-value=55 Score=36.99 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001572 497 ENRSKALLDLQEKHMIALSTLKKKEFIISK 526 (1051)
Q Consensus 497 ~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~ 526 (1051)
++..+++.+|+.-....+..|-++++=|.+
T Consensus 120 KEARkEIkQLkQvieTmrssL~ekDkGiQK 149 (305)
T PF15290_consen 120 KEARKEIKQLKQVIETMRSSLAEKDKGIQK 149 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhHHH
Confidence 333444444444444444444444443333
No 188
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=81.23 E-value=2.4e+02 Score=39.11 Aligned_cols=287 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCC---------hhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001572 410 LKDLYLEIERMKEDVRAARDKNGVYVP---------HERYAQEEAEKKARIEKIEQLENDLNLSEKEVDRFRELYLTEQE 480 (1051)
Q Consensus 410 ik~l~~EI~~Lk~eL~~~r~~~g~~~~---------~e~~~~~e~e~~~~~~~i~~le~~l~~~~~el~~l~~~~~~~~~ 480 (1051)
+.++...++.++..+.++..-.+.|-. ...|.....+...+..++..++..++....++.++.+.......
T Consensus 232 ~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 311 (1353)
T TIGR02680 232 LDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALER 311 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHH
Q 001572 481 QKLDLESELKECK--------INLENRSKALLDLQEKHMIALSTLKKKEFIISKLLCSEKSIIEQAKELRNELQNASEDI 552 (1051)
Q Consensus 481 ~~~~l~~~l~~~~--------~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~~~~~e~~l~~~~~~L~~~l~~~~~d~ 552 (1051)
+...++.++..++ .++......+.++..........+.++..-.......-..+..........+.....++
T Consensus 312 ~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el 391 (1353)
T TIGR02680 312 EADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQL 391 (1353)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHh-----hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001572 553 TSLFSKLD-----QKDRMEAENQSLVLSFG--SQLDQSLKGLHKTILGSVSQQQQQLRCMEEHAQSFLASKCDATHILES 625 (1051)
Q Consensus 553 ~~l~~kl~-----rk~~~~~~n~~~~~~f~--~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 625 (1051)
...-.... -.......+......|. ..+.+.+......+...+....++....... ............
T Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~i~~L~~~~~~~e~a-----~~~~~~~~~~~~ 466 (1353)
T TIGR02680 392 ARAAERAGLSPAHTAEPDAALAAQELQELGALDARRQDADRVIAQRSEQVALLRRRDDVADRA-----EATHAAARARRD 466 (1353)
T ss_pred HHHHHhcCCCccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------------------------------hHHHHHHHHHHHHHHH
Q 001572 626 RIKRMSETYTAGLELLKELDNSMQKKASS-----------------------------------DMEQISSKVSSQTMAV 670 (1051)
Q Consensus 626 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~ 670 (1051)
.+............. ...+.......-. ....+...+..++..+
T Consensus 467 el~~~~~~~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 545 (1353)
T TIGR02680 467 ELDEEAEQAAARAEL-ADEAVHREGARLAWVDAWQAQLRELTILAVDDQPGALADLDSWDALLQGEAPVRVAVYSAVQPL 545 (1353)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHhhhccchhhhhcchhhhhhhhcchhhhhccchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH
Q 001572 671 EQFLVTMVSEGKEVIEDIKNSLSQQKELLALS 702 (1051)
Q Consensus 671 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1051)
..-+.......+...+.+.......+.++...
T Consensus 546 ~~~l~~~~~~l~~~~~~l~e~~~el~~e~~~~ 577 (1353)
T TIGR02680 546 ADELTRERAALRLAEEVLEEERDALRTERERL 577 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 189
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=81.09 E-value=1.1e+02 Score=35.19 Aligned_cols=111 Identities=15% Similarity=0.191 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 660 SSKVSSQTMAVEQFLVTMVSEGKEVIEDIKNSLSQQKELLALSAQQQEEGLQRSWISSQEISKATMDFFNDIHRQASKLK 739 (1051)
Q Consensus 660 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 739 (1051)
.+.........+-.|..-......=+++++++|+.-.+.+..|.++...... .+.-+.+.+..+..+.+..-..+-
T Consensus 206 ak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtK----k~kklEKE~l~wr~K~e~aNk~vL 281 (391)
T KOG1850|consen 206 AKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTK----KIKKLEKETLIWRTKWENANKAVL 281 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3344455555666666655567777899999999999999999888776554 345566677777777777766666
Q ss_pred HHHHHHHh------hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 740 TILEESQT------EKSKELDNFKKTFKEEAAKEEKDALEKI 775 (1051)
Q Consensus 740 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i 775 (1051)
.+.++.+. ..+.+|..|++-++. -..+|..|...+
T Consensus 282 ~la~ekt~~~k~~~~lq~kiq~LekLcRA-Lq~ernel~~~~ 322 (391)
T KOG1850|consen 282 QLAEEKTVRDKEYETLQKKIQRLEKLCRA-LQTERNELNKKL 322 (391)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHhccccHHHHH
Confidence 65554421 134444444444432 234444444443
No 190
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=81.05 E-value=1.1 Score=51.71 Aligned_cols=21 Identities=48% Similarity=0.692 Sum_probs=17.6
Q ss_pred cCCCceeeeccCCCCCcccee
Q 001572 128 DGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 128 ~G~N~TIfAYGqTGSGKTyTM 148 (1051)
.+....++-||++|+|||+++
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHH
Confidence 345568999999999999877
No 191
>PRK08181 transposase; Validated
Probab=81.04 E-value=0.9 Score=51.04 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=27.2
Q ss_pred cCcccCCCcchhhhhhhh-hhhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 101 FDKVFGPKAQQRSIYDQA-IVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 101 FD~VF~~~asQ~~Vy~~~-v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
||.-+.+..+...+..-. +...++ .|.| |+-||++|+||||.+.+
T Consensus 80 fd~~~~~~~~~~~~~~L~~~~~~~~---~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 80 FDFEAVPMVSKAQVMAIAAGDSWLA---KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred CCccCCCCCCHHHHHHHHHHHHHHh---cCce--EEEEecCCCcHHHHHHH
Confidence 444444544444444322 112333 5555 88999999999999876
No 192
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=81.00 E-value=1 Score=48.13 Aligned_cols=47 Identities=15% Similarity=0.339 Sum_probs=30.7
Q ss_pred eeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceec
Q 001572 97 RVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 97 k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
..|+||....+ .+..+++. +..++ ..+....|+-||++|+||||...
T Consensus 10 ~~~~~~~~~~~--~~~~~~~~-l~~~~---~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYAG--GNAELLAA-LRQLA---AGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCcC--CcHHHHHH-HHHHH---hcCCCCeEEEECCCCCCHHHHHH
Confidence 45788877732 33444443 22222 25667789999999999999874
No 193
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.92 E-value=27 Score=40.24 Aligned_cols=31 Identities=13% Similarity=0.137 Sum_probs=14.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHH
Q 001572 538 AKELRNELQNASEDITSLFSKLDQKDRMEAE 568 (1051)
Q Consensus 538 ~~~L~~~l~~~~~d~~~l~~kl~rk~~~~~~ 568 (1051)
...+.++.+.....+....+.|++..++..-
T Consensus 108 l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~ 138 (314)
T PF04111_consen 108 LIEFQEERDSLKNQYEYASNQLDRLRKTNVY 138 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHT--TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 3344444555555555555666655544433
No 194
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=80.83 E-value=24 Score=36.67 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=8.0
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHHHH
Q 001572 678 VSEGKEVIEDIKNSLSQQKELLALS 702 (1051)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1051)
..+++.+..+|...+....+.|+.+
T Consensus 105 ~~E~qk~~k~v~~~~~~~~e~l~~~ 129 (155)
T PF07464_consen 105 VQESQKLAKEVSENSEGANEKLQPA 129 (155)
T ss_dssp HHHHHHHHHHHHS---SS-GGGHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3333333333333433333333333
No 195
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=80.44 E-value=1.1 Score=42.90 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=18.8
Q ss_pred HHHHhhcCCCceeeeccCCCCCcccee
Q 001572 122 IVNEVLDGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 122 lV~~vl~G~N~TIfAYGqTGSGKTyTM 148 (1051)
+...+.......++.+|++|+|||+++
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333334556889999999999866
No 196
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=80.18 E-value=0.87 Score=54.76 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=31.9
Q ss_pred eEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 98 VFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 98 ~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
.|+||..+.... +...|. .+..++..-=..|| .+|-||.+|+||||.|.+
T Consensus 111 ~~tFdnFv~g~~-n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGSS-NEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCCc-HHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 589999664443 455664 34444432111244 488999999999998853
No 197
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=80.09 E-value=1.7 Score=55.62 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=20.3
Q ss_pred hhhHHHHhhcCCCceeeeccCCCCCcccee
Q 001572 119 IVPIVNEVLDGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 119 v~plV~~vl~G~N~TIfAYGqTGSGKTyTM 148 (1051)
+.|.+.. .|-+.+||.||++|||||.|+
T Consensus 771 L~paIkg--sgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 771 LESGIKQ--SGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHhc--CCCCceEEEECCCCCCHHHHH
Confidence 4444432 345567889999999999987
No 198
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=79.70 E-value=2.2e+02 Score=37.83 Aligned_cols=92 Identities=21% Similarity=0.232 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHH
Q 001572 502 ALLDLQEKHMIALSTLKKKEFIISKLLCSEKSIIEQAKELRNELQNASEDITSLFSKLDQ----KDRMEAENQSLVLSFG 577 (1051)
Q Consensus 502 ~l~~l~~~~~~~~~~l~e~~~~~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl~r----k~~~~~~n~~~~~~f~ 577 (1051)
.+.+.+.++..++.+...-+.++..|....+.+...+.....++.....++..++.+|.. ...+...+.+-+..|+
T Consensus 395 ~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG 474 (1074)
T KOG0250|consen 395 ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG 474 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc
Confidence 334444444444444444444555555555555555555555555556666667777653 3355666677788898
Q ss_pred HHHHHHHHHHHHHHHh
Q 001572 578 SQLDQSLKGLHKTILG 593 (1051)
Q Consensus 578 ~~l~~~l~~~~~~~~~ 593 (1051)
..+-+-|..|...-..
T Consensus 475 ~~m~~lL~~I~r~~~~ 490 (1074)
T KOG0250|consen 475 PNMPQLLRAIERRKRR 490 (1074)
T ss_pred hhhHHHHHHHHHHHhc
Confidence 8888888887765544
No 199
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=79.51 E-value=2.6 Score=46.83 Aligned_cols=131 Identities=23% Similarity=0.389 Sum_probs=74.6
Q ss_pred eEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCc-eeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHH
Q 001572 98 VFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNC-TVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDT 176 (1051)
Q Consensus 98 ~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~-TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~ 176 (1051)
...+|...+-+.....+.+.+ ..++.|..+ -++-||..|||||.++- .++..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVk----------------------all~~ 75 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVK----------------------ALLNE 75 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHH----------------------HHHHH
Confidence 456777777666555555443 567788765 36679999999987763 22333
Q ss_pred HhhcccCcccEEEEEEEEccccccccccCCCCCcccccCCCceeeeecCCCceEEcCceE-EEcCCHHHHHHHHhhhhhc
Q 001572 177 LEAQNADYSMKVSFLELYNEDITDLLAQEDHSKSTEDKQKKPISLMEDGKGCVVVRGLEE-EAVYSANDIYTILERGSAK 255 (1051)
Q Consensus 177 le~~~~~~sV~vS~lEIYnE~v~DLL~~~~~~~~~~~~~~~~l~i~Ed~~~gv~V~gLte-~~V~s~~e~~~lL~~G~~~ 255 (1051)
...++ +-.+||..+.+.||-.--..- .+... .. -+++.+|+- ..=.+...+..+|+-|...
T Consensus 76 y~~~G------LRlIev~k~~L~~l~~l~~~l---~~~~~-kF--------Ilf~DDLsFe~~d~~yk~LKs~LeGgle~ 137 (249)
T PF05673_consen 76 YADQG------LRLIEVSKEDLGDLPELLDLL---RDRPY-KF--------ILFCDDLSFEEGDTEYKALKSVLEGGLEA 137 (249)
T ss_pred HhhcC------ceEEEECHHHhccHHHHHHHH---hcCCC-CE--------EEEecCCCCCCCcHHHHHHHHHhcCcccc
Confidence 33333 567899888766663211000 00001 11 233444441 1123456677777777655
Q ss_pred cccccccccCCCCCCeeEE
Q 001572 256 RRTADTLLNKRSSRSHSVF 274 (1051)
Q Consensus 256 R~~a~T~~N~~SSRSH~If 274 (1051)
| .....+.+.|.|-|.|-
T Consensus 138 ~-P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 138 R-PDNVLIYATSNRRHLVP 155 (249)
T ss_pred C-CCcEEEEEecchhhccc
Confidence 4 45566677788888663
No 200
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=79.39 E-value=1.4 Score=51.45 Aligned_cols=20 Identities=45% Similarity=0.630 Sum_probs=16.7
Q ss_pred CCCceeeeccCCCCCcccee
Q 001572 129 GFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 129 G~N~TIfAYGqTGSGKTyTM 148 (1051)
+....++-||++|+|||+++
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 44556899999999999977
No 201
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=79.29 E-value=0.98 Score=53.48 Aligned_cols=53 Identities=28% Similarity=0.446 Sum_probs=32.3
Q ss_pred cCeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 95 IDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 95 ~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
....|+||........ .-.|.. ..-+.+.-.+.---||-||.+|+||||.|..
T Consensus 80 l~~~ytFdnFv~g~~N-~~A~aa--~~~va~~~g~~~nplfi~G~~GlGKTHLl~A 132 (408)
T COG0593 80 LNPKYTFDNFVVGPSN-RLAYAA--AKAVAENPGGAYNPLFIYGGVGLGKTHLLQA 132 (408)
T ss_pred CCCCCchhheeeCCch-HHHHHH--HHHHHhccCCcCCcEEEECCCCCCHHHHHHH
Confidence 3467999986544443 333322 2222222233344688999999999999954
No 202
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=78.95 E-value=29 Score=41.66 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001572 410 LKDLYLEIERMKEDVRAA 427 (1051)
Q Consensus 410 ik~l~~EI~~Lk~eL~~~ 427 (1051)
+.+|+.-|+.||.++..-
T Consensus 222 VdDLQD~VE~LRkDV~~R 239 (424)
T PF03915_consen 222 VDDLQDLVEDLRKDVVQR 239 (424)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 457777777777776543
No 203
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=78.93 E-value=1e+02 Score=33.57 Aligned_cols=20 Identities=10% Similarity=0.403 Sum_probs=8.4
Q ss_pred HHHHhHHHHHHHHHHHHhhH
Q 001572 543 NELQNASEDITSLFSKLDQK 562 (1051)
Q Consensus 543 ~~l~~~~~d~~~l~~kl~rk 562 (1051)
..+.....-.+.||.+.++.
T Consensus 83 ~dL~s~E~sfsdl~~ryek~ 102 (207)
T PF05010_consen 83 ADLNSLEKSFSDLHKRYEKQ 102 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 33333333344455554433
No 204
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.54 E-value=27 Score=40.24 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001572 626 RIKRMSETYTAGLELLKELDNSMQKK 651 (1051)
Q Consensus 626 ~i~~~~~~~~~~~~~~~~~~~~~~~~ 651 (1051)
.-.+++...+..+-.|..++++++-.
T Consensus 167 ~W~EINAA~Gq~~LLL~~la~~l~~~ 192 (314)
T PF04111_consen 167 EWNEINAAWGQTALLLQTLAKKLNFK 192 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHCT--
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44556666666555566666655443
No 205
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=77.54 E-value=1.6e+02 Score=35.03 Aligned_cols=23 Identities=22% Similarity=0.318 Sum_probs=18.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHh
Q 001572 538 AKELRNELQNASEDITSLFSKLD 560 (1051)
Q Consensus 538 ~~~L~~~l~~~~~d~~~l~~kl~ 560 (1051)
...|+..++++..|..-|+.|++
T Consensus 203 vN~LwKrmdkLe~ekr~Lq~KlD 225 (552)
T KOG2129|consen 203 VNSLWKRMDKLEQEKRYLQKKLD 225 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677778888888888888886
No 206
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=77.51 E-value=1.7 Score=46.82 Aligned_cols=49 Identities=12% Similarity=0.265 Sum_probs=30.7
Q ss_pred CeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceec
Q 001572 96 DRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 96 ~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
...|+||.+++... ..++. .+..++.. .+.+..++-||++||||||.+.
T Consensus 12 ~~~~~~d~f~~~~~--~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 12 PPPPTFDNFVAGEN--AELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CChhhhcccccCCc--HHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 35689999883332 22332 23443331 2345578999999999999874
No 207
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=77.14 E-value=74 Score=40.86 Aligned_cols=77 Identities=9% Similarity=0.157 Sum_probs=45.5
Q ss_pred CCCcceeEEeecCCCCCChHhhHHHHHHHHHhhhccccccccccc--CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 001572 360 GGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQKM--SKAVLLKDLYLEIERMKEDVRAARDKNGVYVP 436 (1051)
Q Consensus 360 GGnskT~mIatISPs~~~~eETLsTL~fA~RAk~Iknkp~vN~~~--~k~~lik~l~~EI~~Lk~eL~~~r~~~g~~~~ 436 (1051)
++++.++-|..-+|.+.-...-+++|-=+--..++..+-...... --...+.++..+++....+|...|.++|+...
T Consensus 224 ~~~s~ii~Is~~~~dP~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~ 302 (726)
T PRK09841 224 SKESGMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDL 302 (726)
T ss_pred CCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 556777778888888887777777765444444444332222110 00122445566666666677778888887643
No 208
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=76.66 E-value=1.6 Score=51.82 Aligned_cols=51 Identities=29% Similarity=0.462 Sum_probs=35.1
Q ss_pred eEecCcccCCCcchhhhhhhhhhhHHH-Hhhc--C--CCceeeeccCCCCCcccee
Q 001572 98 VFTFDKVFGPKAQQRSIYDQAIVPIVN-EVLD--G--FNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 98 ~F~FD~VF~~~asQ~~Vy~~~v~plV~-~vl~--G--~N~TIfAYGqTGSGKTyTM 148 (1051)
.++|+.|-|.+..-..+.+.+..|+.. .++. | ....|+-||++|||||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 467888888776656666655556553 2333 2 2456889999999999876
No 209
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=76.62 E-value=1.4e+02 Score=33.73 Aligned_cols=34 Identities=26% Similarity=0.225 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 001572 583 SLKGLHKTILGSVSQQQQQLRCMEEHAQSFLASK 616 (1051)
Q Consensus 583 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 616 (1051)
++..+...+..-...|..+++.+..+++.-+...
T Consensus 121 qIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l 154 (258)
T PF15397_consen 121 QIANLVRQLQQLKDSQQDELDELNEMRQMELASL 154 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555554443333
No 210
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=76.42 E-value=2 Score=47.89 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=35.2
Q ss_pred eeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 97 RVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 97 k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
++|.|..+-.+...+..+|.. +..++..+-.|.| ++-||++|+||||...+
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALED-LASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CCcccccccCCcchhHHHHHH-HHHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 667666655555567777765 4556655554444 56799999999998865
No 211
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=76.21 E-value=1.8e+02 Score=34.76 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Q 001572 450 RIEKIEQLENDLNLSEKEVDRFREL 474 (1051)
Q Consensus 450 ~~~~i~~le~~l~~~~~el~~l~~~ 474 (1051)
+.+++..+..++...+.++..+++.
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666667777666666666654
No 212
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=76.10 E-value=3.6 Score=45.57 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=20.6
Q ss_pred hHHHHhhcCC---CceeeeccCCCCCccceec
Q 001572 121 PIVNEVLDGF---NCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 121 plV~~vl~G~---N~TIfAYGqTGSGKTyTM~ 149 (1051)
+.+..+|... .+.|+..|.||||||.+|.
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHHH
Confidence 3444444444 5677788999999999983
No 213
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=75.68 E-value=2.1e+02 Score=35.34 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=7.7
Q ss_pred hhhHHHHHHHHHHHhh
Q 001572 864 SSRQQWEYAQSYIRNL 879 (1051)
Q Consensus 864 ~~~~~~~~~~~~~~~l 879 (1051)
.-+..|+.|...|+.+
T Consensus 472 ~v~~~v~~a~~~m~~l 487 (570)
T COG4477 472 AVSALVDIATEDMNTL 487 (570)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555555555444
No 214
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=75.60 E-value=2.4e+02 Score=35.96 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=7.7
Q ss_pred HHHHHhhhHHHHHHHHHH
Q 001572 457 LENDLNLSEKEVDRFREL 474 (1051)
Q Consensus 457 le~~l~~~~~el~~l~~~ 474 (1051)
++.+|..++..+-...+.
T Consensus 96 lE~~Lankda~lrq~eek 113 (916)
T KOG0249|consen 96 LENELANKDADLRQNEEK 113 (916)
T ss_pred HHHHHhCcchhhchhHHh
Confidence 344444444444333333
No 215
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.28 E-value=1.1e+02 Score=36.81 Aligned_cols=13 Identities=15% Similarity=0.429 Sum_probs=6.3
Q ss_pred CcchhHHHHHHHH
Q 001572 163 AGVIPRAVRQIFD 175 (1051)
Q Consensus 163 ~GIIpRal~~LF~ 175 (1051)
.||+|+.+.+-|.
T Consensus 190 ~gi~t~~c~Hsfh 202 (493)
T KOG0804|consen 190 TGILTILCNHSFH 202 (493)
T ss_pred cceeeeecccccc
Confidence 3555555544443
No 216
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=75.24 E-value=1.6e+02 Score=33.79 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhhH
Q 001572 550 EDITSLFSKLDQK 562 (1051)
Q Consensus 550 ~d~~~l~~kl~rk 562 (1051)
.++..+...|.+.
T Consensus 107 ~~~~~ler~i~~L 119 (294)
T COG1340 107 RSIKSLEREIERL 119 (294)
T ss_pred CCHHHHHHHHHHH
Confidence 3444444444433
No 217
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=75.14 E-value=1.9e+02 Score=34.54 Aligned_cols=12 Identities=8% Similarity=0.307 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHh
Q 001572 549 SEDITSLFSKLD 560 (1051)
Q Consensus 549 ~~d~~~l~~kl~ 560 (1051)
+.+++.-+.+|.
T Consensus 131 Tn~Lsrkl~qLr 142 (552)
T KOG2129|consen 131 TNPLSRKLKQLR 142 (552)
T ss_pred cCchhHHHHHHH
Confidence 445555555544
No 218
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=75.10 E-value=2.2e+02 Score=35.41 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001572 619 ATHILESRIKRMSETYTAG 637 (1051)
Q Consensus 619 ~~~~~~~~i~~~~~~~~~~ 637 (1051)
..+++..++..+.+.+...
T Consensus 347 ~le~L~~el~~l~~~l~~~ 365 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKA 365 (563)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 219
>PRK10869 recombination and repair protein; Provisional
Probab=74.89 E-value=2.3e+02 Score=35.40 Aligned_cols=18 Identities=33% Similarity=0.708 Sum_probs=13.0
Q ss_pred cCCCceeeeccCCCCCcccee
Q 001572 128 DGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 128 ~G~N~TIfAYGqTGSGKTyTM 148 (1051)
.|+|+ -.|.||+|||-.|
T Consensus 22 ~glnv---itGetGaGKS~il 39 (553)
T PRK10869 22 SGMTV---ITGETGAGKSIAI 39 (553)
T ss_pred CCcEE---EECCCCCChHHHH
Confidence 35554 5699999997555
No 220
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.70 E-value=2.7e+02 Score=36.08 Aligned_cols=8 Identities=63% Similarity=1.269 Sum_probs=4.5
Q ss_pred EEEeCCCC
Q 001572 56 LLRCRPLS 63 (1051)
Q Consensus 56 ~vRvRP~~ 63 (1051)
+++|||.-
T Consensus 149 lls~r~~e 156 (970)
T KOG0946|consen 149 LLSCRPTE 156 (970)
T ss_pred HHhcCCHH
Confidence 35667653
No 221
>PRK10436 hypothetical protein; Provisional
Probab=74.69 E-value=1.5 Score=52.93 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=24.0
Q ss_pred HHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 122 IVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 122 lV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
.+..++..-++.|+..|+||||||.||+.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 44556667788999999999999999964
No 222
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=74.63 E-value=1.5e+02 Score=33.15 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001572 410 LKDLYLEIERMKEDVRAA 427 (1051)
Q Consensus 410 ik~l~~EI~~Lk~eL~~~ 427 (1051)
+..+...++.+..+|...
T Consensus 19 ~~~l~~~~e~~~~~L~~~ 36 (264)
T PF06008_consen 19 PYKLLSSIEDLTNQLRSY 36 (264)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555566666665443
No 223
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=74.61 E-value=1.4e+02 Score=33.04 Aligned_cols=23 Identities=9% Similarity=0.304 Sum_probs=9.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHh
Q 001572 525 SKLLCSEKSIIEQAKELRNELQN 547 (1051)
Q Consensus 525 ~~~~~~e~~l~~~~~~L~~~l~~ 547 (1051)
+.+..+...+......+...|+.
T Consensus 94 ~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 94 EQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444
No 224
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=74.60 E-value=97 Score=30.98 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001572 406 KAVLLKDLYLEIERMKEDVRAAR 428 (1051)
Q Consensus 406 k~~lik~l~~EI~~Lk~eL~~~r 428 (1051)
...++..|...|.++..++.+++
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~ 36 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQ 36 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777776665554
No 225
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=74.53 E-value=1.1e+02 Score=31.48 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHH
Q 001572 450 RIEKIEQLENDLNLSEKEVDRFR 472 (1051)
Q Consensus 450 ~~~~i~~le~~l~~~~~el~~l~ 472 (1051)
+...|..|+.+++..+.....+.
T Consensus 22 le~~v~~LEreLe~~q~~~e~~~ 44 (140)
T PF10473_consen 22 LEDHVESLERELEMSQENKECLI 44 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 34555556655555544444333
No 226
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=74.33 E-value=1.5 Score=54.31 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=24.5
Q ss_pred HHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 122 IVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 122 lV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
.+..++..-++.|+..|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45667777789999999999999999965
No 227
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=74.31 E-value=1.2 Score=42.18 Aligned_cols=17 Identities=35% Similarity=0.352 Sum_probs=15.0
Q ss_pred eeeccCCCCCccceecc
Q 001572 134 VFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 134 IfAYGqTGSGKTyTM~G 150 (1051)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 56889999999999976
No 228
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=74.30 E-value=42 Score=42.96 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC
Q 001572 410 LKDLYLEIERMKEDVRAARDKN 431 (1051)
Q Consensus 410 ik~l~~EI~~Lk~eL~~~r~~~ 431 (1051)
+++|..+..+|..++..+|...
T Consensus 259 i~~LE~en~~l~~Elk~Lr~~~ 280 (722)
T PF05557_consen 259 IRELEKENRRLREELKHLRQSQ 280 (722)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665533
No 229
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=74.19 E-value=75 Score=30.27 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH
Q 001572 479 QEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEFIISKLLCSEKSII 535 (1051)
Q Consensus 479 ~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~~~~~e~~l~ 535 (1051)
.+.+..+..+..+...+.-...+....+..+...++..+.....+++++.+.|..+.
T Consensus 30 E~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~ 86 (96)
T PF08647_consen 30 EQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEKEFV 86 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333444444444444444445555555555555555555555555555555444443
No 230
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.18 E-value=55 Score=35.60 Aligned_cols=22 Identities=9% Similarity=0.214 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001572 407 AVLLKDLYLEIERMKEDVRAAR 428 (1051)
Q Consensus 407 ~~lik~l~~EI~~Lk~eL~~~r 428 (1051)
...+.+++.|+..|+.+|...+
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888887776544
No 231
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=74.16 E-value=1.5e+02 Score=33.04 Aligned_cols=39 Identities=33% Similarity=0.391 Sum_probs=17.5
Q ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 001572 516 TLKKKEFIISKLLCSEKSIIEQAKELRNELQNASEDITS 554 (1051)
Q Consensus 516 ~l~e~~~~~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~ 554 (1051)
.+.+....+..+......-...+..|...+.....+...
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEE 121 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333444455555555544444433
No 232
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=73.98 E-value=1 Score=58.30 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHH
Q 001572 533 SIIEQAKELRNELQNAS 549 (1051)
Q Consensus 533 ~l~~~~~~L~~~l~~~~ 549 (1051)
.|..+...++..++...
T Consensus 240 ~L~~qLeelk~~leeEt 256 (859)
T PF01576_consen 240 SLESQLEELKRQLEEET 256 (859)
T ss_dssp -----------------
T ss_pred HHHHHHHhhHHHHHhHh
Confidence 33333334443333333
No 233
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=73.83 E-value=1.3e+02 Score=34.17 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 483 LDLESELKECKINLENRSKALLDLQ 507 (1051)
Q Consensus 483 ~~l~~~l~~~~~~l~~~~~~l~~l~ 507 (1051)
..|+.++++-+.+|+..++-|..|+
T Consensus 193 ~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 193 ANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 234
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=73.81 E-value=2.3e+02 Score=34.90 Aligned_cols=74 Identities=11% Similarity=0.147 Sum_probs=46.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001572 524 ISKLLCSEKSIIEQAKELRNELQNASEDITSLFSKLDQKDRMEAENQSLVLSFGSQLDQSLKGLHKTILGSVSQQQQ 600 (1051)
Q Consensus 524 ~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl~rk~~~~~~n~~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~ 600 (1051)
.......+..+.+++.++-..+.....-+.....+|++--..+...+.+... .+..+++++...+...++....
T Consensus 253 ~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~---~e~sk~eeL~~~L~~~lea~q~ 326 (531)
T PF15450_consen 253 LGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKEK---LEESKAEELATKLQENLEAMQL 326 (531)
T ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH---HHHhhHHHHHHHHHHHHHHHHH
Confidence 3334444567778888888888888888888888887665555555444333 3455556666555555544433
No 235
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.64 E-value=2.6e+02 Score=35.56 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001572 619 ATHILESRIKRMSETYTAGLELLKELDNSMQK 650 (1051)
Q Consensus 619 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 650 (1051)
..+++..+|.++.+.+..-++.+.++...+..
T Consensus 161 kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~ 192 (660)
T KOG4302|consen 161 KLEELREHLNELQKEKSDRLEKVLELKEEIKS 192 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555544444444444443333
No 236
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=73.59 E-value=1e+02 Score=30.88 Aligned_cols=56 Identities=23% Similarity=0.298 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 537 QAKELRNELQNASEDITSLFSKLDQKDRMEAENQSLVLSFGSQLDQSLKGLHKTIL 592 (1051)
Q Consensus 537 ~~~~L~~~l~~~~~d~~~l~~kl~rk~~~~~~n~~~~~~f~~~l~~~l~~~~~~~~ 592 (1051)
....++..+......+..|...++.-......+...|..=...|.+.+..++.++.
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~ 115 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIE 115 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666655555555556666666666666666665553
No 237
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=73.37 E-value=1.9e+02 Score=33.69 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 468 VDRFRELYLTEQEQKLDLESELKECKINLENRSKA 502 (1051)
Q Consensus 468 l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~ 502 (1051)
+..+++.....+.+..+|+..-+++..+|-.....
T Consensus 87 lr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~v 121 (401)
T PF06785_consen 87 LRKIRESVEERQQESEQLQSQNQKLKNQLFHVREV 121 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333333
No 238
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=73.36 E-value=1.9e+02 Score=35.00 Aligned_cols=14 Identities=7% Similarity=-0.076 Sum_probs=9.4
Q ss_pred CcCCCCchhhhhhh
Q 001572 344 IPYRDSKLTRLLRD 357 (1051)
Q Consensus 344 IPYRdSKLTrLLqd 357 (1051)
.+|-..++.|+.|.
T Consensus 209 w~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 209 WWDSSCPVCRYCQS 222 (493)
T ss_pred cccCcChhhhhhcC
Confidence 45666678887665
No 239
>PRK11519 tyrosine kinase; Provisional
Probab=73.11 E-value=1.2e+02 Score=38.91 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=44.4
Q ss_pred CCcceeEEeecCCCCCChHhhHHHHHHHHHhhhccccccccccc--CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 001572 361 GKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNKPEANQKM--SKAVLLKDLYLEIERMKEDVRAARDKNGVYV 435 (1051)
Q Consensus 361 GnskT~mIatISPs~~~~eETLsTL~fA~RAk~Iknkp~vN~~~--~k~~lik~l~~EI~~Lk~eL~~~r~~~g~~~ 435 (1051)
..+..+-|..-++++.-....+++|-=+---.++..+-...... --...+.++..+++.....|...|.++|+..
T Consensus 225 k~S~ii~Is~~~~dP~~Aa~iaN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd 301 (719)
T PRK11519 225 KDTGVLSLTYTGEDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVD 301 (719)
T ss_pred CCceEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34677778888888888888888875444444443222211110 0112244566666666667777888888754
No 240
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=72.89 E-value=2.5 Score=48.17 Aligned_cols=37 Identities=27% Similarity=0.298 Sum_probs=24.0
Q ss_pred hhhhhhhhhHHHHhhcC-CCceeeeccCCCCCccceec
Q 001572 113 SIYDQAIVPIVNEVLDG-FNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 113 ~Vy~~~v~plV~~vl~G-~N~TIfAYGqTGSGKTyTM~ 149 (1051)
-++++.+..++...+.| .---.+-||+.|||||.|..
T Consensus 38 ~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 38 LAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred hcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 34444444455555544 34456789999999999873
No 241
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=72.76 E-value=4.1 Score=47.46 Aligned_cols=52 Identities=27% Similarity=0.504 Sum_probs=30.8
Q ss_pred eEecCcccCCCcchhhhhhhhhhhHHHH-hhc--CC--CceeeeccCCCCCccceec
Q 001572 98 VFTFDKVFGPKAQQRSIYDQAIVPIVNE-VLD--GF--NCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 98 ~F~FD~VF~~~asQ~~Vy~~~v~plV~~-vl~--G~--N~TIfAYGqTGSGKTyTM~ 149 (1051)
.+.||.+.+.+..-+.+.+.+..|+... .+. |. ...|+-||++|||||++..
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 4566666665554445544444443321 121 22 3458899999999998774
No 242
>PRK11281 hypothetical protein; Provisional
Probab=72.63 E-value=3.6e+02 Score=36.65 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=11.5
Q ss_pred HHHHHHhHHHHHHHHHHHHhhHH
Q 001572 541 LRNELQNASEDITSLFSKLDQKD 563 (1051)
Q Consensus 541 L~~~l~~~~~d~~~l~~kl~rk~ 563 (1051)
+...++.....+..|++.|..|.
T Consensus 232 ~~~~~~~~~~~~~~lq~~in~kr 254 (1113)
T PRK11281 232 LTARIQRLEHQLQLLQEAINSKR 254 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555666655443
No 243
>PF13245 AAA_19: Part of AAA domain
Probab=72.49 E-value=1.8 Score=39.35 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=17.5
Q ss_pred HHHhhcCCCceeeeccCCCCCccceec
Q 001572 123 VNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 123 V~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
|...+. -+..+...|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 344445 23334458999999999885
No 244
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=72.40 E-value=49 Score=30.19 Aligned_cols=38 Identities=32% Similarity=0.443 Sum_probs=22.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 001572 523 IISKLLCSEKSIIEQAKELRNELQNASEDITSLFSKLD 560 (1051)
Q Consensus 523 ~~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl~ 560 (1051)
+|.++...+..+......+...++....++..|.+.+.
T Consensus 34 ~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555556666666666666666666666554
No 245
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=72.34 E-value=2 Score=52.17 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=24.0
Q ss_pred HHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 122 IVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 122 lV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
.+..++..-++.|+..|+||||||.||..
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 45566677778899999999999999964
No 246
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=72.33 E-value=1.5e+02 Score=32.03 Aligned_cols=12 Identities=8% Similarity=0.468 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHh
Q 001572 549 SEDITSLFSKLD 560 (1051)
Q Consensus 549 ~~d~~~l~~kl~ 560 (1051)
..|...+..++.
T Consensus 164 ~~e~a~~ir~~e 175 (201)
T PF12072_consen 164 RREAAALIRRIE 175 (201)
T ss_pred HHHHHHHHHHHH
Confidence 345555555544
No 247
>PRK12705 hypothetical protein; Provisional
Probab=71.96 E-value=2.1e+02 Score=35.33 Aligned_cols=8 Identities=25% Similarity=0.277 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 001572 770 DALEKIAV 777 (1051)
Q Consensus 770 ~~~~~i~~ 777 (1051)
-||-+|+.
T Consensus 353 GLLHDIGK 360 (508)
T PRK12705 353 GLLHDIGK 360 (508)
T ss_pred HHHHHcCC
Confidence 34444443
No 248
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=71.94 E-value=1.3e+02 Score=33.43 Aligned_cols=66 Identities=12% Similarity=0.200 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 445 AEKKARIEKIEQLENDLNLSEKEVDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKH 510 (1051)
Q Consensus 445 ~e~~~~~~~i~~le~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~ 510 (1051)
.+...+..++..+..+++..+.....+......+++++.+++.+++..+.........+.++-..+
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555555555444444444444444443333
No 249
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=71.93 E-value=64 Score=33.60 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhHHHH
Q 001572 681 GKEVIEDIKNSLSQQ 695 (1051)
Q Consensus 681 ~~~~~~~~~~~~~~~ 695 (1051)
.+.++++..+.+...
T Consensus 130 ~K~~~D~~~k~~~~~ 144 (155)
T PF07464_consen 130 IKQAYDDAVKAAQKV 144 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 250
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=70.85 E-value=3.4 Score=48.72 Aligned_cols=51 Identities=27% Similarity=0.473 Sum_probs=31.4
Q ss_pred eEecCcccCCCcchhhhhhhhhhhHHHH-hhc--C--CCceeeeccCCCCCcccee
Q 001572 98 VFTFDKVFGPKAQQRSIYDQAIVPIVNE-VLD--G--FNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 98 ~F~FD~VF~~~asQ~~Vy~~~v~plV~~-vl~--G--~N~TIfAYGqTGSGKTyTM 148 (1051)
.++||.|.+-+..-+.+.+.+..|+... .+. | ....|+-||++|||||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 3566666665555455555554554432 222 2 2346889999999999865
No 251
>PRK09183 transposase/IS protein; Provisional
Probab=70.57 E-value=2.5 Score=47.15 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=25.9
Q ss_pred cCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 101 FDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 101 FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
||.=|.+..+...+..-..... +-.|.| |+-||++|+||||.+.+
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHHH
Confidence 4444555554443432211122 224554 56799999999998864
No 252
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=70.57 E-value=1.1e+02 Score=36.13 Aligned_cols=55 Identities=11% Similarity=0.309 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001572 466 KEVDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKK 520 (1051)
Q Consensus 466 ~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~ 520 (1051)
.++..+...|...+.+..+.+.+.......+.....+|.++.+++.+.+..+.++
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666666777777777777777777777777777776666666
No 253
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=70.54 E-value=2.8e+02 Score=34.56 Aligned_cols=18 Identities=11% Similarity=0.322 Sum_probs=11.5
Q ss_pred CCCcCCCCchhhhhhhcc
Q 001572 342 AHIPYRDSKLTRLLRDSL 359 (1051)
Q Consensus 342 ~hIPYRdSKLTrLLqdSL 359 (1051)
.+|||-+.-+-.++....
T Consensus 38 ~~vP~~e~lv~~~e~~~~ 55 (582)
T PF09731_consen 38 EYVPYGEELVDYIEEEES 55 (582)
T ss_pred HhCCcHHHHHHHHhhhcc
Confidence 468888766666665543
No 254
>PRK06921 hypothetical protein; Provisional
Probab=70.43 E-value=2.5 Score=47.40 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=22.0
Q ss_pred hhhHHHHhhc---CCCceeeeccCCCCCccceecc
Q 001572 119 IVPIVNEVLD---GFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 119 v~plV~~vl~---G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
+...++.+-. +..-.++-||++|+||||.+.+
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 4445554432 2345688999999999999865
No 255
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=70.37 E-value=1.7 Score=40.97 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=16.1
Q ss_pred ceeeeccCCCCCccceecc
Q 001572 132 CTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 132 ~TIfAYGqTGSGKTyTM~G 150 (1051)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4578899999999999854
No 256
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=70.30 E-value=1.4 Score=42.71 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=12.9
Q ss_pred CceeeeccCCCCCcccee
Q 001572 131 NCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 131 N~TIfAYGqTGSGKTyTM 148 (1051)
..+++.||++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 356889999999999877
No 257
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=70.20 E-value=4.1e+02 Score=36.34 Aligned_cols=84 Identities=17% Similarity=0.249 Sum_probs=54.6
Q ss_pred HhhHHHhhHHHHHhhhHHHHHhhHHHHHHH-HHHHHhhhhhhhhhhHHHhh-HHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001572 798 QDTNIQQNKRLQNEISSVQQVSTDARKELS-KYIQNVESHFMEDTFSAAES-RAIMENSLQECSKTVDSSRQQWEYAQSY 875 (1051)
Q Consensus 798 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~e~~~~~~~~-~~~m~~~lq~~~~~~~~~~~~~~~~~~~ 875 (1051)
++.....+..+.+.+..++......+.++. .=...++.+|+.-..-..+. .+.+ =|-.|.+.-+.+--+|....
T Consensus 1050 ~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~~~nyr~~~ie~~tt~~~~~--DL~ky~~aLD~Aim~fHs~K-- 1125 (1294)
T KOG0962|consen 1050 REKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDAEKNYRKALIELKTTELSNK--DLDKYYKALDKAIMQFHSMK-- 1125 (1294)
T ss_pred HHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--
Confidence 344556667777888888888888888888 55566677777665555443 3322 35566666666666776655
Q ss_pred HHhhhccChHHHHHHHHH
Q 001572 876 IRNLNTSSTAEIKSAIKE 893 (1051)
Q Consensus 876 ~~~l~~~~~~~~~~~v~~ 893 (1051)
|.+++.||++
T Consensus 1126 --------MeeiN~iI~e 1135 (1294)
T KOG0962|consen 1126 --------MEEINRIIRE 1135 (1294)
T ss_pred --------HHHHHHHHHH
Confidence 5666777763
No 258
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=70.20 E-value=1.4e+02 Score=34.85 Aligned_cols=107 Identities=14% Similarity=0.181 Sum_probs=56.5
Q ss_pred cCCCcceeEEeecCCCCCChHhhHHHH-----HHHHHhhhcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 001572 359 LGGKTKTCIIATISPSAHSLEETMSTL-----DYAYRAKNIKNKPEANQKMSKAVLLKDLYLEIERMKEDVRAARDKNGV 433 (1051)
Q Consensus 359 LGGnskT~mIatISPs~~~~eETLsTL-----~fA~RAk~Iknkp~vN~~~~k~~lik~l~~EI~~Lk~eL~~~r~~~g~ 433 (1051)
..+.+..+-|---++++.....-.+++ .|.... ..+.......--...+.++..++...+..|...|.++|+
T Consensus 126 ~~~~s~ii~I~~~~~dP~~A~~ian~l~~~~~~~i~~~---~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~ 202 (362)
T TIGR01010 126 VDSVSGILTLNVTAFDAEEAQKINQRLLKEGERLINRL---NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKV 202 (362)
T ss_pred ecCCCCeEEEEEEecCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 456677777777788877777777766 232221 000000000001122445556666666667777888988
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001572 434 YVPHERYAQEEAEKKARIEKIEQLENDLNLSEKEVDRFRELY 475 (1051)
Q Consensus 434 ~~~~e~~~~~e~e~~~~~~~i~~le~~l~~~~~el~~l~~~~ 475 (1051)
..+.... ......+..++.++...+.++..++..+
T Consensus 203 ~d~~~~~-------~~~~~~i~~L~~~l~~~~~~l~~l~~~~ 237 (362)
T TIGR01010 203 FDPKAQS-------SAQLSLISTLEGELIRVQAQLAQLRSIT 237 (362)
T ss_pred cChHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7654321 1223445555555555555555555433
No 259
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=70.07 E-value=3.7e+02 Score=35.71 Aligned_cols=287 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001572 443 EEAEKKARIEKIEQLENDLNLSEKEVDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEF 522 (1051)
Q Consensus 443 ~e~e~~~~~~~i~~le~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~ 522 (1051)
.+.......+.++.+..+++....++.++++........+.....++.............+.+.+.....+......-..
T Consensus 627 l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~ 706 (1072)
T KOG0979|consen 627 LEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENLVVDLDR 706 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001572 523 IISKLLCSEKSIIEQAKELRNELQNASEDITSLFSKLDQKDRMEAENQSLVLSFGSQLDQSLKGLHKTILGSVSQQQQQL 602 (1051)
Q Consensus 523 ~~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl~rk~~~~~~n~~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~l 602 (1051)
.-+++...+..++..+..++...-...-.+...+..+.-+......--.-...-.-.+...+..+...+ .+.++-...+
T Consensus 707 qkee~~~~~~~~I~~~~~~~~~~~~~~~~~~~k~~e~~i~~~~~~~~~~~s~~~~iea~~~i~~~e~~i-~~~~~~~~~l 785 (1072)
T KOG0979|consen 707 QEEEYAASEAKKILDTEDMRIQSIRWHLELTDKHKEIGIKEKNESSYMARSNKNNIEAERKIEKLEDNI-SFLEAREDLL 785 (1072)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhh--HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 001572 603 RCMEEHAQSFLASKC--DATHILESRIKRMSE-------TYTAGLELLKELDNSMQKKASSDMEQISSKVSSQTMAVEQF 673 (1051)
Q Consensus 603 ~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1051)
+.--.....+++... .....|...+..... .+...+..+-+....++...+..+......+...-.++++|
T Consensus 786 k~a~~~~k~~a~~~~~~~~~~t~~~~~~s~~~~~~ek~~~~~~e~~e~p~t~~eld~~I~~e~t~~~~~~n~ne~~vq~y 865 (1072)
T KOG0979|consen 786 KTALEDKKKEAAEKRKEQSLQTLKREIMSPATNKIEKSLVLMKELAEEPTTMDELDQAITDELTRALKFENVNEDAVQQY 865 (1072)
T ss_pred HHHHHHHHHHHHhcccchhHHHhhhccccccccchhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001572 674 LVTMVSEGKEVIEDIKNSLSQQKELLALSAQQQEEGLQRSWISSQEISKATMDFFNDIHRQA 735 (1051)
Q Consensus 674 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1051)
-.--.. +..|...+..+.+.|+............-+...+.|-..+.+=|..+...+
T Consensus 866 ~~r~~e-----l~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~~Fs~~F~~m 922 (1072)
T KOG0979|consen 866 EVREDE-----LRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINERFSQLFSSM 922 (1072)
T ss_pred HHHHHH-----HHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 260
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=70.00 E-value=84 Score=36.19 Aligned_cols=62 Identities=13% Similarity=0.121 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001572 466 KEVDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEFIISKL 527 (1051)
Q Consensus 466 ~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~~ 527 (1051)
.++.++.++|..-.-.+..|..+-..+..++..++..|.++++.+.+....++++-.-++.+
T Consensus 84 ~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~ 145 (302)
T PF09738_consen 84 DSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQ 145 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667776666666777778888888888888889888888888877666553333333
No 261
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=69.74 E-value=2.3 Score=42.79 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=20.0
Q ss_pred HHHhhcCCCceeeeccCCCCCccceecc
Q 001572 123 VNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 123 V~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
+..++.|.| ++..|+||+|||+....
T Consensus 8 ~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 8 IEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 344556666 78899999999998865
No 262
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=69.34 E-value=2e+02 Score=32.32 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001572 490 KECKINLENRSKALLDLQEKHMI 512 (1051)
Q Consensus 490 ~~~~~~l~~~~~~l~~l~~~~~~ 512 (1051)
.+++..|+.++..|.+++.++..
T Consensus 180 ~rlK~ele~tk~Klee~QnelsA 202 (330)
T KOG2991|consen 180 LRLKGELEQTKDKLEEAQNELSA 202 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhe
Confidence 44555556666666665555543
No 263
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=69.12 E-value=2.6e+02 Score=33.59 Aligned_cols=38 Identities=8% Similarity=0.079 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 605 MEEHAQSFLASKCDATHILESRIKRMSETYTAGLELLK 642 (1051)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 642 (1051)
-...+.+|...+....+++-.+|-+.+..+...-..+.
T Consensus 377 rssv~gtl~vahgsslDdVD~kIleak~al~evtt~lr 414 (575)
T KOG4403|consen 377 RSSVFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLR 414 (575)
T ss_pred hcchheeeeeccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666778888888777776554443333
No 264
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=69.11 E-value=1.7e+02 Score=31.60 Aligned_cols=29 Identities=21% Similarity=0.223 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 617 CDATHILESRIKRMSETYTAGLELLKELD 645 (1051)
Q Consensus 617 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 645 (1051)
.+..++|..++...+..|.+....|+...
T Consensus 171 eke~DdlE~kl~~~k~ky~~~~~eLD~~~ 199 (205)
T KOG1003|consen 171 EKERDDLEEKLEEAKEKYEEAKKELDETL 199 (205)
T ss_pred cccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777666665555543
No 265
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=69.10 E-value=2.4 Score=49.13 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=21.7
Q ss_pred HHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 122 IVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 122 lV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
.+..++.--.+.|+..|+||||||.||..
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 44455544457789999999999999953
No 266
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=68.88 E-value=1.6 Score=56.65 Aligned_cols=85 Identities=15% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHhh---hhhhhHHHHHHHHHHHhhhccChHHHHHH
Q 001572 814 SVQQVSTDARKELSKYIQNVESHFMEDTFSAAESRAIMENSLQECSKT---VDSSRQQWEYAQSYIRNLNTSSTAEIKSA 890 (1051)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~m~~~lq~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 890 (1051)
.++...+.+..+|..|-.+.|..+...+-.....+.+|..-|+.+-.. .......|..+.. -| ..-+.++..-
T Consensus 289 ~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~---rL-~~EleDl~~e 364 (859)
T PF01576_consen 289 ELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKK---RL-QGELEDLTSE 364 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHH
Confidence 344444455666676767777777776666666777777755555544 4444455555443 23 2233333344
Q ss_pred HHHHHhhhhHHH
Q 001572 891 IKENISANQTAH 902 (1051)
Q Consensus 891 v~~~~~~n~~~~ 902 (1051)
+.+....+..+.
T Consensus 365 Le~~~~~~~~Le 376 (859)
T PF01576_consen 365 LEKAQAAAAELE 376 (859)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 267
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=68.62 E-value=46 Score=40.01 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=45.1
Q ss_pred chhhhhhhccCCCcceeEEeecCCCCCChHhhHHHHHHHHHhhhcc-cccccccccCHHHHHHHHHHH-----HHHHHHH
Q 001572 350 KLTRLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIK-NKPEANQKMSKAVLLKDLYLE-----IERMKED 423 (1051)
Q Consensus 350 KLTrLLqdSLGGnskT~mIatISPs~~~~eETLsTL~fA~RAk~Ik-nkp~vN~~~~k~~lik~l~~E-----I~~Lk~e 423 (1051)
-|..||.-.=|-||+.--.+|..-......-+.+-|.|+.++..=- ......++ .+. ..+.+ |+|||.|
T Consensus 510 ~~~nLl~h~k~R~~qvpg~~~~a~~~~~~~~sa~EleeGk~lireltssvk~g~d--rEV---~~~A~~~~~~~eRLkmE 584 (790)
T PF07794_consen 510 GLANLLRHIKGRNCQVPGVCNYAQAACYADMSAKELEEGKTLIRELTSSVKAGQD--REV---SFQAEGIVPGIERLKME 584 (790)
T ss_pred HHHHHHHHHhcccccCCchhhHHhhhhhcccchhhhhhhHHHHHhhcccccCCcc--cee---ecccccccchhhhhhee
Confidence 4677888888888887666666555555556777778877765422 22222221 100 12334 8899998
Q ss_pred HHHHHh
Q 001572 424 VRAARD 429 (1051)
Q Consensus 424 L~~~r~ 429 (1051)
|.....
T Consensus 585 lst~kD 590 (790)
T PF07794_consen 585 LSTSKD 590 (790)
T ss_pred eccccc
Confidence 876544
No 268
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=68.55 E-value=3.9e+02 Score=35.41 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=26.6
Q ss_pred eccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhh--------cccCcccEEEEEEEE
Q 001572 136 AYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEA--------QNADYSMKVSFLELY 194 (1051)
Q Consensus 136 AYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~--------~~~~~sV~vS~lEIY 194 (1051)
..|..||||+--.. -|.=++.+.|..+.. .+..-.|---|+||-
T Consensus 30 IVGrNGSGKSNFF~---------------AIrFVLSDey~hLk~E~R~gLlHEGsG~~V~sA~VEIv 81 (1200)
T KOG0964|consen 30 IVGRNGSGKSNFFH---------------AIRFVLSDEYSHLKREERQGLLHEGSGAMVMSASVEIV 81 (1200)
T ss_pred EecCCCCCchhhHH---------------HhhhhcccchhhcCHHHHhhhhhcCCCcceEEEEEEEE
Confidence 34999999975442 133345566666632 244556666678884
No 269
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.54 E-value=2.4e+02 Score=32.99 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001572 410 LKDLYLEIERMKEDVRAA 427 (1051)
Q Consensus 410 ik~l~~EI~~Lk~eL~~~ 427 (1051)
+..+..++.+++.++..+
T Consensus 83 l~~l~~~~~~l~a~~~~l 100 (423)
T TIGR01843 83 AAELESQVLRLEAEVARL 100 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666777777666543
No 270
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=68.44 E-value=4.8 Score=48.38 Aligned_cols=49 Identities=29% Similarity=0.500 Sum_probs=28.2
Q ss_pred ecCcccCCCcchhhhhhhhhhhHHHH-hhc--CC--CceeeeccCCCCCcccee
Q 001572 100 TFDKVFGPKAQQRSIYDQAIVPIVNE-VLD--GF--NCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 100 ~FD~VF~~~asQ~~Vy~~~v~plV~~-vl~--G~--N~TIfAYGqTGSGKTyTM 148 (1051)
+|+.|.+-+..-+.+.+.+..|+... ++. |. .-.|+-||++|||||++.
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 55566555444445555444454432 122 21 224778999999998876
No 271
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.44 E-value=2.4e+02 Score=32.97 Aligned_cols=10 Identities=20% Similarity=0.199 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 001572 450 RIEKIEQLEN 459 (1051)
Q Consensus 450 ~~~~i~~le~ 459 (1051)
+..++..+..
T Consensus 86 l~~~~~~l~a 95 (423)
T TIGR01843 86 LESQVLRLEA 95 (423)
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 272
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=68.10 E-value=8.7 Score=44.30 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=20.4
Q ss_pred hhHHHHhhcCCCceeeeccCCCCCccceec
Q 001572 120 VPIVNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 120 ~plV~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
..++..++.+. ..|+..|.||||||++|.
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 34555555553 556667999999998774
No 273
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=68.07 E-value=3.4 Score=49.74 Aligned_cols=53 Identities=23% Similarity=0.406 Sum_probs=32.7
Q ss_pred cCeeEecCcccCCCcchhhhhhhhhhhHHHHh--hcC--CCceeeeccCCCCCccceecc
Q 001572 95 IDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEV--LDG--FNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 95 ~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~v--l~G--~N~TIfAYGqTGSGKTyTM~G 150 (1051)
....|+||..+... .+...|. ++..+.... ..| ||. +|-||++|+||||.+..
T Consensus 104 l~~~~tFdnFv~g~-~N~~a~~-~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 104 LDPLMTFANFLVTP-ENDLPHR-ILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CCccccccceeeCC-cHHHHHH-HHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 35679999876433 3444443 244443322 223 453 67899999999998853
No 274
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=67.98 E-value=2.7 Score=44.75 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=20.0
Q ss_pred HHHHhhcCCCceeeeccCCCCCccceec
Q 001572 122 IVNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 122 lV~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
.|..++.+.+..++..|+.||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 3445555555556668999999999883
No 275
>PRK10884 SH3 domain-containing protein; Provisional
Probab=67.72 E-value=80 Score=34.37 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 001572 452 EKIEQLENDLNLSEKEVDRFR 472 (1051)
Q Consensus 452 ~~i~~le~~l~~~~~el~~l~ 472 (1051)
.++..++.++.....++.++.
T Consensus 93 ~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455544444444444443
No 276
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=67.63 E-value=1.7e+02 Score=30.88 Aligned_cols=41 Identities=10% Similarity=0.154 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhHH
Q 001572 751 KELDNFKKTFKEEAAKEEKDALEKIAVILANLTSRKTAMVS 791 (1051)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~ 791 (1051)
++++++.+.|=++.+.-|..+.-..-+.|....+.|..++.
T Consensus 121 ~~~eEtv~~~ieqqk~~r~e~qk~~~~yv~~~k~~q~~~~~ 161 (165)
T PF09602_consen 121 KQYEETVKQLIEQQKLTREEWQKVLDAYVEQAKSSQKELAK 161 (165)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555566666666665543
No 277
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=67.60 E-value=2.8 Score=49.09 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=19.5
Q ss_pred hcCCCceeeeccCCCCCccceecc
Q 001572 127 LDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 127 l~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
+.--.+.|+..|+||||||.||..
T Consensus 130 ~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 130 IAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HhccCCEEEEECCCCCCHHHHHHH
Confidence 333468899999999999999953
No 278
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=67.51 E-value=50 Score=36.13 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=23.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 001572 525 SKLLCSEKSIIEQAKELRNELQNASEDITSLFSKLDQ 561 (1051)
Q Consensus 525 ~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl~r 561 (1051)
+..+.....|..+++.+..+.....+|.+.|+++|+.
T Consensus 175 e~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 175 EKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 3333444455566667777777777777777777754
No 279
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=67.25 E-value=2.8e+02 Score=33.49 Aligned_cols=64 Identities=11% Similarity=0.198 Sum_probs=35.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001572 539 KELRNELQNASEDITSLFSKLDQKDRMEAENQSL--VLSFGSQLDQSLKGLHKTILGSVSQQQQQL 602 (1051)
Q Consensus 539 ~~L~~~l~~~~~d~~~l~~kl~rk~~~~~~n~~~--~~~f~~~l~~~l~~~~~~~~~~~~~~~~~l 602 (1051)
..+..++..+.-|=......|+|-+++.+..+++ ++.|+.+|..-.++=+....+++++.++.+
T Consensus 356 d~VL~EV~aL~PdHEsRLeAIErAEklR~kEle~r~~d~Fq~ELg~FVe~~kLKksGG~EEvER~R 421 (426)
T smart00806 356 DQVLMEVRALKPDHESRLEAIERAEKLREKELEYRRVDEFEKELGNFVENGKLKKSGGIEEVERLR 421 (426)
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhccCCcccCcCHHHHHHHH
Confidence 3455555666666667777777776666555443 345665555555544444444444444443
No 280
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.01 E-value=1.9e+02 Score=36.13 Aligned_cols=89 Identities=20% Similarity=0.259 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001572 465 EKEVDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEFIISKLLCSEKSIIEQAKELRNE 544 (1051)
Q Consensus 465 ~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~~~~~e~~l~~~~~~L~~~ 544 (1051)
.+++..+.+.......++..|+.++++++..++.++.++..+..+. +.+...-.+ -..+......|...
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~-------~~~~~~~re----i~~~~~~I~~L~~~ 489 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV-------RDKVRKDRE----IRARDRRIERLEKE 489 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHH----HHHHHHHHHHHHHH
Confidence 3444445444444444445555555555444444444444443322 211111111 12244456677777
Q ss_pred HHhHHHHHHHHHHHHhhHHH
Q 001572 545 LQNASEDITSLFSKLDQKDR 564 (1051)
Q Consensus 545 l~~~~~d~~~l~~kl~rk~~ 564 (1051)
|.+....+..|..+|.+..+
T Consensus 490 L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 490 LEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888765443
No 281
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=66.69 E-value=1.5e+02 Score=30.11 Aligned_cols=11 Identities=45% Similarity=0.603 Sum_probs=6.2
Q ss_pred HHhhhhHHHHH
Q 001572 321 GEINKSLLTLG 331 (1051)
Q Consensus 321 ~~INkSL~aLg 331 (1051)
..||..|.++|
T Consensus 5 ~yiN~~L~s~G 15 (151)
T PF11559_consen 5 EYINQQLLSRG 15 (151)
T ss_pred HHHHHHHHHCC
Confidence 35666666554
No 282
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=66.55 E-value=2.2 Score=45.37 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=16.0
Q ss_pred ceeeeccCCCCCccceec
Q 001572 132 CTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 132 ~TIfAYGqTGSGKTyTM~ 149 (1051)
+.|+-.|+||||||.++.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 578889999999999985
No 283
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=66.50 E-value=2.6 Score=44.40 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=21.4
Q ss_pred hhHHHHhhcCCCceeeeccCCCCCccceec
Q 001572 120 VPIVNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 120 ~plV~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
..+...+-.|.+..++-||+.|+|||+.|.
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 334444445678899999999999999874
No 284
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=66.44 E-value=3.8 Score=44.94 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=17.8
Q ss_pred hcCCCceeeeccCCCCCccceec
Q 001572 127 LDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 127 l~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
+......++-+|++|+|||+++.
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH
Confidence 34445578889999999998774
No 285
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=66.19 E-value=3 Score=49.05 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=17.2
Q ss_pred CCceeeeccCCCCCccceec
Q 001572 130 FNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 130 ~N~TIfAYGqTGSGKTyTM~ 149 (1051)
.++.|+..|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45678889999999999994
No 286
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.01 E-value=1.1e+02 Score=38.23 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=18.1
Q ss_pred CcchhHHHHHHHHHHhhcccCcccE
Q 001572 163 AGVIPRAVRQIFDTLEAQNADYSMK 187 (1051)
Q Consensus 163 ~GIIpRal~~LF~~le~~~~~~sV~ 187 (1051)
.|-|.+....|=..|...+.+|-+.
T Consensus 163 h~av~~~~reIee~L~~agldyDl~ 187 (652)
T COG2433 163 HGAVKRVVREIEEKLDEAGLDYDLE 187 (652)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceeE
Confidence 4778888888888887766665543
No 287
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=65.71 E-value=2.6e+02 Score=32.35 Aligned_cols=48 Identities=21% Similarity=0.314 Sum_probs=25.7
Q ss_pred HhhHHHHHHHHHhhh-cccccccccccC-----HHHHHHHHHHHHHHHHHHHHHHHh
Q 001572 379 EETMSTLDYAYRAKN-IKNKPEANQKMS-----KAVLLKDLYLEIERMKEDVRAARD 429 (1051)
Q Consensus 379 eETLsTL~fA~RAk~-Iknkp~vN~~~~-----k~~lik~l~~EI~~Lk~eL~~~r~ 429 (1051)
+|.=.-|.+|.|+-+ +--+ |..+. -...+..-...|..|+-+|....+
T Consensus 72 eEkerDLelaA~iGqsLl~~---N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kde 125 (306)
T PF04849_consen 72 EEKERDLELAARIGQSLLEQ---NQDLSERNEALEEQLGAALEQVEQLRHELSMKDE 125 (306)
T ss_pred HHHhhhHHHHHHHhHHHHHh---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888888843 3221 22211 122344555677777777764443
No 288
>PF12846 AAA_10: AAA-like domain
Probab=65.57 E-value=2.3 Score=46.79 Aligned_cols=19 Identities=37% Similarity=0.586 Sum_probs=16.2
Q ss_pred CceeeeccCCCCCccceec
Q 001572 131 NCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 131 N~TIfAYGqTGSGKTyTM~ 149 (1051)
|.-++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999885
No 289
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=65.50 E-value=3.3 Score=47.21 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=22.0
Q ss_pred hhhHHHHhhcCCCceeeeccCCCCCccceec
Q 001572 119 IVPIVNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 119 v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
...++..++.+ .+.|+..|.||||||.+|.
T Consensus 121 ~~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 121 QRDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 34555555554 4567889999999999884
No 290
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=65.49 E-value=3.6 Score=43.24 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=15.9
Q ss_pred ceeeeccCCCCCccceecc
Q 001572 132 CTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 132 ~TIfAYGqTGSGKTyTM~G 150 (1051)
-.++-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 3588999999999998865
No 291
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=65.46 E-value=3.6 Score=46.05 Aligned_cols=28 Identities=29% Similarity=0.448 Sum_probs=21.4
Q ss_pred HHHhhcCCCceeeeccCCCCCccceecc
Q 001572 123 VNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 123 V~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
+..++..-.+.|+-.|+||||||.||..
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 4455555566788889999999999953
No 292
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=65.45 E-value=2.3 Score=45.89 Aligned_cols=15 Identities=40% Similarity=0.806 Sum_probs=12.9
Q ss_pred eeeccCCCCCcccee
Q 001572 134 VFAYGQTGTGKTYTM 148 (1051)
Q Consensus 134 IfAYGqTGSGKTyTM 148 (1051)
+..+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 446799999999999
No 293
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=65.14 E-value=4.9e+02 Score=35.37 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHH
Q 001572 764 AAKEEKDALEKIAVILANLTSRKTA 788 (1051)
Q Consensus 764 ~~~~~~~~~~~i~~ll~~~~~~~~~ 788 (1051)
..+.|++||+++..-+.+......+
T Consensus 384 ll~~rr~LL~~L~~~~~~~l~~l~~ 408 (1109)
T PRK10929 384 QLRTQRELLNSLLSGGDTLILELTK 408 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455777777776666665554444
No 294
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=64.81 E-value=3.6 Score=48.11 Aligned_cols=37 Identities=32% Similarity=0.583 Sum_probs=28.1
Q ss_pred CcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCcccee
Q 001572 108 KAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 108 ~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM 148 (1051)
+..|..+|+.++.-+.. .....+|.-|+-||||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence 35689999887555433 44456789999999999987
No 295
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=63.94 E-value=3.3e+02 Score=32.92 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001572 410 LKDLYLEIERMKEDVRA 426 (1051)
Q Consensus 410 ik~l~~EI~~Lk~eL~~ 426 (1051)
+..+..++.+|+.++..
T Consensus 106 ~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 106 LDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666666665543
No 296
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=63.84 E-value=3.4e+02 Score=33.11 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001572 407 AVLLKDLYLEIERMKEDVRA 426 (1051)
Q Consensus 407 ~~lik~l~~EI~~Lk~eL~~ 426 (1051)
...+..+..++..+..++..
T Consensus 10 ~~~~~~~~~e~~~i~~e~e~ 29 (473)
T PF14643_consen 10 EKALESFHEELASISEEVEP 29 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777666543
No 297
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=63.75 E-value=4.3e+02 Score=34.17 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=27.2
Q ss_pred HHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHH
Q 001572 827 SKYIQNVESHFMEDTFSAAESRAIMENSLQECS 859 (1051)
Q Consensus 827 ~~~~~~~e~~~~e~~~~~~~~~~~m~~~lq~~~ 859 (1051)
++|.-.-|.+|+.+.++.++...|++..||.-+
T Consensus 826 stfts~de~~f~~glaalda~iarlq~sl~~~~ 858 (861)
T PF15254_consen 826 STFTSRDEQDFRNGLAALDANIARLQRSLQTGL 858 (861)
T ss_pred cccccccHHHHHhhHHHhhhhHHHHHHHHHhhh
Confidence 455667799999999999999999998887643
No 298
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=63.75 E-value=11 Score=45.34 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=18.7
Q ss_pred HHHHhhcCCCceeeeccCCCCCcccee
Q 001572 122 IVNEVLDGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 122 lV~~vl~G~N~TIfAYGqTGSGKTyTM 148 (1051)
.+..+++|.|.. ..++||||||.+.
T Consensus 117 ai~~~~~G~dvi--~~apTGSGKTlay 141 (475)
T PRK01297 117 VLGYTLAGHDAI--GRAQTGTGKTAAF 141 (475)
T ss_pred HHHHHhCCCCEE--EECCCCChHHHHH
Confidence 455678998864 4569999999654
No 299
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=63.48 E-value=3.6e+02 Score=33.16 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=12.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Q 001572 607 EHAQSFLASKCDATHILESRIKRMS 631 (1051)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~i~~~~ 631 (1051)
+.+...+....+.....+++|.++.
T Consensus 136 ~~l~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 136 QSLNSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3344444555555555555554444
No 300
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=62.66 E-value=2.9 Score=40.18 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=13.1
Q ss_pred eeeccCCCCCcccee
Q 001572 134 VFAYGQTGTGKTYTM 148 (1051)
Q Consensus 134 IfAYGqTGSGKTyTM 148 (1051)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999866
No 301
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=62.45 E-value=3.5 Score=43.38 Aligned_cols=18 Identities=39% Similarity=0.567 Sum_probs=13.3
Q ss_pred eeeeccCCCCCccceecc
Q 001572 133 TVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 133 TIfAYGqTGSGKTyTM~G 150 (1051)
..+..|+.|||||+|+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp -EEEE-STTSSHHHHHHH
T ss_pred CEEEECCCCCChHHHHHH
Confidence 456789999999998854
No 302
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=62.27 E-value=3.3e+02 Score=32.33 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 001572 408 VLLKDLYLEIERMKEDVRAARD 429 (1051)
Q Consensus 408 ~lik~l~~EI~~Lk~eL~~~r~ 429 (1051)
.-+.+|+.|++.|+.++.....
T Consensus 94 ~kl~RL~~Ev~EL~eEl~~~~~ 115 (388)
T PF04912_consen 94 QKLQRLRREVEELKEELEKRKA 115 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777888888888876544
No 303
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=61.89 E-value=5.5 Score=46.90 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=37.4
Q ss_pred CeeEecCcccCCCcchhhhhhhhhhhHHHHhhc--C--CCceeeeccCCCCCcccee
Q 001572 96 DRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLD--G--FNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 96 ~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~--G--~N~TIfAYGqTGSGKTyTM 148 (1051)
.+++.||.+.+.----..+.+.++..+...++. | .---+.-||+.|+|||+..
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 356778887766655566667777777777764 2 2335778999999999863
No 304
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=61.83 E-value=5e+02 Score=34.36 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=12.4
Q ss_pred ceeeeccCCCCCcccee
Q 001572 132 CTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 132 ~TIfAYGqTGSGKTyTM 148 (1051)
+..+-+|+||||||..|
T Consensus 26 gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 26 GIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CeEEEECCCCCcHHHHH
Confidence 44457799999997443
No 305
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=61.64 E-value=2.6 Score=53.57 Aligned_cols=13 Identities=8% Similarity=0.532 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHH
Q 001572 750 SKELDNFKKTFKE 762 (1051)
Q Consensus 750 ~~~~~~~~~~~~~ 762 (1051)
...|..+++.|++
T Consensus 635 ~~~i~~lE~~~e~ 647 (713)
T PF05622_consen 635 DRRIESLEKELEK 647 (713)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhhh
Confidence 4455555666543
No 306
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=61.58 E-value=2.7 Score=53.56 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=9.7
Q ss_pred EEcCceEEEcCCHHHHHHHHhhhh
Q 001572 230 VVRGLEEEAVYSANDIYTILERGS 253 (1051)
Q Consensus 230 ~V~gLte~~V~s~~e~~~lL~~G~ 253 (1051)
||..+.......-..++..|....
T Consensus 131 yI~~I~~Ld~~~Q~~im~~Iqev~ 154 (713)
T PF05622_consen 131 YIQRIMELDESTQHAIMEAIQEVT 154 (713)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHh
Confidence 333333333334444444444443
No 307
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=61.46 E-value=5.1 Score=44.92 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=27.4
Q ss_pred hhhh-hhhHHHHhhcCCCceeeeccCCCCCccceec
Q 001572 115 YDQA-IVPIVNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 115 y~~~-v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
|++. ..|+++++.--.-+.|+..|.|||||+.||-
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 4443 4567777777778889999999999999984
No 308
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=60.73 E-value=5.5e+02 Score=34.42 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 001572 409 LLKDLYLEIERMKEDVRAARD 429 (1051)
Q Consensus 409 lik~l~~EI~~Lk~eL~~~r~ 429 (1051)
+-++|+..|.+.|++|..++.
T Consensus 1064 Is~eLReQIq~~KQ~LesLQR 1084 (1439)
T PF12252_consen 1064 ISSELREQIQSVKQDLESLQR 1084 (1439)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999887763
No 309
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=60.67 E-value=2.6 Score=43.06 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=13.1
Q ss_pred hcCCCceeeeccCCCCCcccee
Q 001572 127 LDGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 127 l~G~N~TIfAYGqTGSGKTyTM 148 (1051)
..|-...++.+|..|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 4566788999999999999876
No 310
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.60 E-value=3e+02 Score=33.67 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=4.2
Q ss_pred CCcCCCCchh
Q 001572 343 HIPYRDSKLT 352 (1051)
Q Consensus 343 hIPYRdSKLT 352 (1051)
-++|=++.-|
T Consensus 229 tv~~~e~~~~ 238 (508)
T KOG3091|consen 229 TVRYAEGTST 238 (508)
T ss_pred ccccCCCccc
Confidence 3444444333
No 311
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=60.20 E-value=4e+02 Score=32.71 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001572 616 KCDATHILESRIKRMSETYTAGLELLKELDNSMQK 650 (1051)
Q Consensus 616 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 650 (1051)
..+.+..|..+|..+.+.-...-.+-.++.+.++.
T Consensus 163 ~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkg 197 (475)
T PRK10361 163 EAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKG 197 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33445556666666665433333334445555543
No 312
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=60.05 E-value=5.4 Score=45.12 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=16.8
Q ss_pred cCC-CceeeeccCCCCCccceec
Q 001572 128 DGF-NCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 128 ~G~-N~TIfAYGqTGSGKTyTM~ 149 (1051)
.|- ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 453 3466679999999999874
No 313
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.04 E-value=3.3e+02 Score=31.58 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 001572 734 QASKLKTILEESQTEKSKELDNFKKTFK 761 (1051)
Q Consensus 734 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 761 (1051)
+...+.+++++...-....+..++..|+
T Consensus 259 eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 259 EIAEAEKIREECRGWTRSEVKRLKAKVD 286 (325)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4455555565554445555555555554
No 314
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=59.46 E-value=3.3e+02 Score=31.39 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 620 THILESRIKRMSETYTAGLELLKELDN 646 (1051)
Q Consensus 620 ~~~~~~~i~~~~~~~~~~~~~~~~~~~ 646 (1051)
++++......+...+......++.+.+
T Consensus 202 ~De~Rkeade~he~~ve~~~~~~e~~e 228 (294)
T COG1340 202 ADELRKEADELHEEFVELSKKIDELHE 228 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 444555555555554444444444433
No 315
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=58.94 E-value=3.4e+02 Score=31.46 Aligned_cols=10 Identities=10% Similarity=0.242 Sum_probs=7.7
Q ss_pred HHHHHHHHHH
Q 001572 571 SLVLSFGSQL 580 (1051)
Q Consensus 571 ~~~~~f~~~l 580 (1051)
.+|..|+.+|
T Consensus 132 ~~WYeWR~kl 141 (312)
T smart00787 132 KMWYEWRMKL 141 (312)
T ss_pred HHHHHHHHHH
Confidence 6788888766
No 316
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=58.78 E-value=6 Score=44.89 Aligned_cols=42 Identities=19% Similarity=0.357 Sum_probs=25.7
Q ss_pred ecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceec
Q 001572 100 TFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 100 ~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
+||.+.+ |..+.+. +...+-.|....++-||++|+|||+++.
T Consensus 13 ~~~~~~g----~~~~~~~----L~~~~~~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVER----LSRAVDSPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHHH----HHHHHhCCCCceEEEECCCCCCHHHHHH
Confidence 5777775 3333332 2222223443457889999999999884
No 317
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=58.32 E-value=8.5 Score=48.65 Aligned_cols=91 Identities=21% Similarity=0.391 Sum_probs=53.5
Q ss_pred EecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcch--h--HHHHHHH
Q 001572 99 FTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVI--P--RAVRQIF 174 (1051)
Q Consensus 99 F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GII--p--Ral~~LF 174 (1051)
|....=|.|.-+|..-|.. +++.+-.|...- ..+|.|||||||||-.-.... ..+-|| | ....+|+
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~-----~~p~Lvi~~n~~~A~ql~ 71 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQV-----NRPTLVIAHNKTLAAQLY 71 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHh-----CCCEEEEECCHHHHHHHH
Confidence 4444557888888887765 444445564222 378999999999996532111 111121 1 1334555
Q ss_pred HHHhh--cccCcccEEEEEEEEccccc
Q 001572 175 DTLEA--QNADYSMKVSFLELYNEDIT 199 (1051)
Q Consensus 175 ~~le~--~~~~~sV~vS~lEIYnE~v~ 199 (1051)
..+.. .+......|||+..|.-+.|
T Consensus 72 ~el~~f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 72 NEFKEFFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred HHHHHhCCCCeEEEEeeecccCCcccc
Confidence 54433 12346778999999987643
No 318
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=58.25 E-value=4.2e+02 Score=32.23 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 618 DATHILESRIKRMSETYTAGLELLKEL 644 (1051)
Q Consensus 618 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ 644 (1051)
.....+...+...++.|..-+..+.+.
T Consensus 355 ~el~~L~Re~~~~~~~Y~~l~~r~eea 381 (498)
T TIGR03007 355 AELTQLNRDYEVNKSNYEQLLTRRESA 381 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666555553
No 319
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=57.90 E-value=5.4 Score=46.11 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=19.9
Q ss_pred hHHHHhhcCCCceeeeccCCCCCccceec
Q 001572 121 PIVNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 121 plV~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
.++..++.+ .+.|+..|.||||||.+|.
T Consensus 135 ~~L~~~v~~-~~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDS-RLNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 444455443 2457888999999999984
No 320
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=57.55 E-value=5.8 Score=41.68 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=21.2
Q ss_pred hhhHHHHhhcCCCceeeeccCCCCCccceec
Q 001572 119 IVPIVNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 119 v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
..+++..++.. ...+.-.|+||||||.+|.
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 44555555554 3456778999999999874
No 321
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=57.31 E-value=3.2e+02 Score=33.80 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=11.7
Q ss_pred CHHHHHHHH-HHHHHHHHHHHHHHH
Q 001572 405 SKAVLLKDL-YLEIERMKEDVRAAR 428 (1051)
Q Consensus 405 ~k~~lik~l-~~EI~~Lk~eL~~~r 428 (1051)
.++.+|+.+ ...|.+|-.++..+.
T Consensus 409 sRE~LIk~~Y~~RI~eLt~qlQ~ad 433 (518)
T PF10212_consen 409 SREQLIKSYYMSRIEELTSQLQHAD 433 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 345666665555443
No 322
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=57.08 E-value=4.4e+02 Score=32.13 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 605 MEEHAQSFLASKCDATHILESRIKRMSETYTAGLELLKEL 644 (1051)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 644 (1051)
.+..|..-++.+.+..+-|..--.++.....+.|..++..
T Consensus 447 qclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrE 486 (527)
T PF15066_consen 447 QCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKRE 486 (527)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444333333333333334444444433
No 323
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.04 E-value=3.9e+02 Score=32.75 Aligned_cols=12 Identities=42% Similarity=0.393 Sum_probs=6.2
Q ss_pred CCCCccceeccC
Q 001572 140 TGTGKTYTMEGG 151 (1051)
Q Consensus 140 TGSGKTyTM~G~ 151 (1051)
.|+||++-.+|.
T Consensus 151 ~Gt~~~~~~~g~ 162 (508)
T KOG3091|consen 151 FGTGKAPYKFGA 162 (508)
T ss_pred cccCCCccccCC
Confidence 455555555553
No 324
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=56.96 E-value=1.6e+02 Score=34.05 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001572 496 LENRSKALLDLQEKHMIALSTLKKKEFIISK 526 (1051)
Q Consensus 496 l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~ 526 (1051)
++..+.....++.++..+...|++++.+|++
T Consensus 142 lEr~K~~~d~L~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 142 LERQKRAHDSLREELDELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555556666666654
No 325
>PF13479 AAA_24: AAA domain
Probab=56.72 E-value=4.4 Score=43.65 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=16.6
Q ss_pred CceeeeccCCCCCccceecc
Q 001572 131 NCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 131 N~TIfAYGqTGSGKTyTM~G 150 (1051)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 34688999999999998754
No 326
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=56.49 E-value=3.8 Score=43.82 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=14.7
Q ss_pred eeeeccCCCCCccceec
Q 001572 133 TVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 133 TIfAYGqTGSGKTyTM~ 149 (1051)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46778999999999984
No 327
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=56.27 E-value=3.8e+02 Score=31.11 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 001572 575 SFGSQLDQSLKGLHKTILGSVSQQQQQLRCMEEHAQSFLA 614 (1051)
Q Consensus 575 ~f~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 614 (1051)
-|..+|. ..+-+...+...+..|...+..+......|..
T Consensus 244 lf~~eL~-kf~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~ 282 (342)
T cd08915 244 LFEEHLK-KFDKDLTYVEKTKKKQIELIKEIDAANQEFSQ 282 (342)
T ss_pred HHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444442 24445555555555555555555555555543
No 328
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=56.26 E-value=6.8 Score=39.46 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=18.0
Q ss_pred HHhhcCCCceeeeccCCCCCccceecc
Q 001572 124 NEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 124 ~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
..++.+. ..++..|++|||||+++..
T Consensus 18 ~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 18 EALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 3344442 4556779999999998765
No 329
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=55.99 E-value=56 Score=41.16 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 619 ATHILESRIKRMSETYTAGLELLKEL 644 (1051)
Q Consensus 619 ~~~~~~~~i~~~~~~~~~~~~~~~~~ 644 (1051)
..+++..+|..+++.+..--+....+
T Consensus 229 ~~~~l~~~i~~LW~~L~~~~ee~~~F 254 (619)
T PF03999_consen 229 KLQELREKIEELWNRLDVPEEEREAF 254 (619)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 44555555555555544444334433
No 330
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=55.74 E-value=3.8 Score=49.65 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001572 509 KHMIALSTLKKKEFIISKLLCSEKSIIEQAKELRNELQ 546 (1051)
Q Consensus 509 ~~~~~~~~l~e~~~~~~~~~~~e~~l~~~~~~L~~~l~ 546 (1051)
++......+..|..||++..+....|......|...|.
T Consensus 452 e~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~ 489 (495)
T PF12004_consen 452 EHAEMQAVLDHKQRIIDAQEKRIAALDAANSRLMSALT 489 (495)
T ss_dssp --------------------------------------
T ss_pred hHHHHhcccccchHHHHHhhhhcccccccccccccccc
Confidence 33334444566666777666666556555555555444
No 331
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=55.63 E-value=4.4e+02 Score=31.69 Aligned_cols=54 Identities=24% Similarity=0.320 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 453 KIEQLENDLNLSEKEVDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIA 513 (1051)
Q Consensus 453 ~i~~le~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~ 513 (1051)
++..++..+...+++.+.+.++.. .+..+-+.+...+..++.+|.+|+++..+.
T Consensus 14 r~~~~~~~laq~~k~~s~~~aq~~-------~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l 67 (459)
T KOG0288|consen 14 RLIDLNTELAQCEKAQSRLSAQLV-------ILRAESRAIKAKLQEKELELNRLQEENTQL 67 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445444455555544333 334444445555555555555555555544
No 332
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=55.43 E-value=12 Score=43.57 Aligned_cols=29 Identities=28% Similarity=0.568 Sum_probs=23.1
Q ss_pred hHHHHhhcCCCceeeeccCCCCCccceeccC
Q 001572 121 PIVNEVLDGFNCTVFAYGQTGTGKTYTMEGG 151 (1051)
Q Consensus 121 plV~~vl~G~N~TIfAYGqTGSGKTyTM~G~ 151 (1051)
.+|..+|+|-+| +.+..||||||..+-+.
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFaLP 64 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFALP 64 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhhHH
Confidence 356678899998 45678999999988764
No 333
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=55.13 E-value=4 Score=39.06 Aligned_cols=16 Identities=31% Similarity=0.725 Sum_probs=13.8
Q ss_pred eeeccCCCCCccceec
Q 001572 134 VFAYGQTGTGKTYTME 149 (1051)
Q Consensus 134 IfAYGqTGSGKTyTM~ 149 (1051)
|+-||++|+|||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~ 16 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK 16 (107)
T ss_pred CEEECCCCCCHHHHHH
Confidence 5789999999998773
No 334
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=55.09 E-value=4.5 Score=38.69 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=13.7
Q ss_pred eeeeccCCCCCcccee
Q 001572 133 TVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 133 TIfAYGqTGSGKTyTM 148 (1051)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999865
No 335
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=55.06 E-value=6.2e+02 Score=33.27 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhhhhhhhHHHhhHHHHHHHHHHHHhhhhhhhH
Q 001572 826 LSKYIQNVESHFMEDTFSAAESRAIMENSLQECSKTVDSSRQ 867 (1051)
Q Consensus 826 ~~~~~~~~e~~~~e~~~~~~~~~~~m~~~lq~~~~~~~~~~~ 867 (1051)
-+.|..+ -+.+.|+..+.+.-...=.++|-+...+|-.++.
T Consensus 824 ~~eFY~k-NsrWTEGLISAaKAVa~aatvLVeaAdkvV~~~g 864 (980)
T KOG0980|consen 824 PNEFYKK-NSRWTEGLISAAKAVAWAATVLVEAADKVVTGTG 864 (980)
T ss_pred HHHHHHh-cCchhHHHHHHHHHHHHHHHHHHHHhhhHhcCCC
Confidence 3455555 6677777777766677777777777777666533
No 336
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=54.94 E-value=4.1e+02 Score=31.09 Aligned_cols=13 Identities=8% Similarity=0.363 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 001572 723 ATMDFFNDIHRQA 735 (1051)
Q Consensus 723 ~~~~~~~~~~~~~ 735 (1051)
.+-.+|+.|.++.
T Consensus 284 dcRrLfDsLreEn 296 (401)
T PF06785_consen 284 DCRRLFDSLREEN 296 (401)
T ss_pred HHHHHHhhhcccc
Confidence 3444455554443
No 337
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=54.82 E-value=3.1e+02 Score=31.22 Aligned_cols=10 Identities=50% Similarity=0.866 Sum_probs=4.7
Q ss_pred HHHHHHHHHh
Q 001572 453 KIEQLENDLN 462 (1051)
Q Consensus 453 ~i~~le~~l~ 462 (1051)
+|.+|+.+++
T Consensus 19 KIqelE~Qld 28 (307)
T PF10481_consen 19 KIQELEQQLD 28 (307)
T ss_pred HHHHHHHHHH
Confidence 4555554443
No 338
>PHA00729 NTP-binding motif containing protein
Probab=54.64 E-value=8.3 Score=42.39 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=22.3
Q ss_pred hhhHHHHhhcCCCceeeeccCCCCCccceec
Q 001572 119 IVPIVNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 119 v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
+..++..+..|--..|+.+|.+|+||||...
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 3445666554433579999999999998764
No 339
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.35 E-value=5.2e+02 Score=32.16 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001572 520 KEFIISKLLCSEKSIIEQAKELRNELQNASEDITSLFSKLDQKDRMEAENQSLVLSFGSQLDQSLKGLHKTILGSVSQQQ 599 (1051)
Q Consensus 520 ~~~~~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl~rk~~~~~~n~~~~~~f~~~l~~~l~~~~~~~~~~~~~~~ 599 (1051)
+++-|++...-..++..-+..|+...++..+|+..+..++. .+.+...-+..++.+..+.|.
T Consensus 572 rEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~------------------~i~e~a~~La~R~eea~e~qe 633 (741)
T KOG4460|consen 572 REQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERK------------------SLREMAERLADRYEEAKEKQE 633 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhHH
Q ss_pred HHHHHHHHHHHHHHhhhh-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 001572 600 QQLRCMEEHAQSFLASKC-----------------DATHILESRIKRMSETYTAGLELLKELDNSMQKKASSDMEQISSK 662 (1051)
Q Consensus 600 ~~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (1051)
.....++..++.|-+..- ...+.|..-|..++..+..+-..+.......+...-...+.-.+.
T Consensus 634 ~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~ 713 (741)
T KOG4460|consen 634 DLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKC 713 (741)
T ss_pred HHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 001572 663 VSSQTMAVEQFLVTMVSEGKEV 684 (1051)
Q Consensus 663 ~~~~~~~~~~~l~~~~~~~~~~ 684 (1051)
+.+-...+......+..+.+.|
T Consensus 714 iqsiL~~L~~~i~~~~k~VK~i 735 (741)
T KOG4460|consen 714 IQSILKELGEHIREMVKQVKDI 735 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 340
>PHA03332 membrane glycoprotein; Provisional
Probab=54.32 E-value=5.6e+02 Score=34.33 Aligned_cols=33 Identities=21% Similarity=0.149 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001572 579 QLDQSLKGLHKTILGSVSQQQQQLRCMEEHAQS 611 (1051)
Q Consensus 579 ~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 611 (1051)
.+-|||..+-+.+..+..++..+...+..=+++
T Consensus 983 lyYQQlnsltnqv~~saskL~~qv~myrTCl~S 1015 (1328)
T PHA03332 983 LYYQQLNSLTNQVTQSASKLGYQVGMYRTCLKS 1015 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 445666666666666655555555555444444
No 341
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=53.61 E-value=2.3e+02 Score=27.86 Aligned_cols=66 Identities=32% Similarity=0.331 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH-HHHHHHHhHHHHHHHHHH
Q 001572 479 QEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEFIISKLLCSEKSIIEQAK-ELRNELQNASEDITSLFS 557 (1051)
Q Consensus 479 ~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~~~~~e~~l~~~~~-~L~~~l~~~~~d~~~l~~ 557 (1051)
..+..+|...+..++.+.....+.+.+|+.++..+...+..+ ..+. +|...+.....|...+.-
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~e---------------K~ak~~l~~r~~k~~~dka~lel 100 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDE---------------KQAKLELESRLLKAQKDKAILEL 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhhhhHHHH
Confidence 334444555555555555555555555555555443332221 1233 455555555666666655
Q ss_pred HH
Q 001572 558 KL 559 (1051)
Q Consensus 558 kl 559 (1051)
++
T Consensus 101 ~l 102 (107)
T PF09304_consen 101 KL 102 (107)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 342
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=53.51 E-value=6.7 Score=45.52 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=22.3
Q ss_pred hhhHHHHhhcCCCceeeeccCCCCCccceec
Q 001572 119 IVPIVNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 119 v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
+..++..++.+. |.|+..|.||||||.++-
T Consensus 162 ~a~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 162 AAKFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 344455555555 889999999999999874
No 343
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=53.40 E-value=7.1e+02 Score=33.48 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=28.5
Q ss_pred hhHHHHHhHhhhHHHHhhhccchhhHhhhhhhhhh
Q 001572 941 IDSITTICLDQLKFVQEKHGENLSTIRNQAEKCFT 975 (1051)
Q Consensus 941 ~~~~~~~~~~~l~~l~~~h~~~~~~I~~~a~~~l~ 975 (1051)
+...+..|.+.|+....+|-.--..|+-++...|-
T Consensus 914 ~~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~F~ 948 (1074)
T KOG0250|consen 914 LDELLKALGEALESREQKYQKFRKLLTRRATEEFD 948 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788889999999998888888888877776654
No 344
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=53.15 E-value=5.4 Score=44.24 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=17.0
Q ss_pred CCCceeeeccCCCCCccceecc
Q 001572 129 GFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 129 G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
-.++.++..|..|||||+||..
T Consensus 11 ~~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 11 STEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp S-SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCchHHHHH
Confidence 3677888889999999999964
No 345
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=53.08 E-value=3.7e+02 Score=33.49 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHH
Q 001572 411 KDLYLEIERMKEDV 424 (1051)
Q Consensus 411 k~l~~EI~~Lk~eL 424 (1051)
|.|+.||+++-..+
T Consensus 4 RKLq~eIdr~lkKv 17 (575)
T KOG2150|consen 4 RKLQQEIDRCLKKV 17 (575)
T ss_pred hHHHHHHHHHHHHh
Confidence 57888898876644
No 346
>PLN03025 replication factor C subunit; Provisional
Probab=52.94 E-value=8.3 Score=44.11 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=14.9
Q ss_pred eeeeccCCCCCccceecc
Q 001572 133 TVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 133 TIfAYGqTGSGKTyTM~G 150 (1051)
-++-||+.|+|||++...
T Consensus 36 ~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 36 NLILSGPPGTGKTTSILA 53 (319)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 456699999999998854
No 347
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=52.82 E-value=4.8e+02 Score=31.35 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 453 KIEQLENDLNLSEKEVDRFRELYLTEQEQKLDLESELKECKIN 495 (1051)
Q Consensus 453 ~i~~le~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~ 495 (1051)
++.+.++.......|+..++..+.....+..+.+.+|..++++
T Consensus 21 ~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e 63 (459)
T KOG0288|consen 21 ELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEE 63 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555555554444444444444444433
No 348
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.67 E-value=3.8e+02 Score=30.06 Aligned_cols=9 Identities=11% Similarity=0.387 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 001572 416 EIERMKEDV 424 (1051)
Q Consensus 416 EI~~Lk~eL 424 (1051)
-++.|...|
T Consensus 62 y~d~L~~~L 70 (243)
T cd07666 62 YVEAFSQKI 70 (243)
T ss_pred HHHHHHHHh
Confidence 344444433
No 349
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=52.57 E-value=3.6e+02 Score=29.80 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=4.8
Q ss_pred ccCCCccee
Q 001572 358 SLGGKTKTC 366 (1051)
Q Consensus 358 SLGGnskT~ 366 (1051)
+|||.-+++
T Consensus 30 aLG~eYnIT 38 (290)
T COG4026 30 ALGSEYNIT 38 (290)
T ss_pred hhcccceeE
Confidence 466655443
No 350
>PF01044 Vinculin: Vinculin family; InterPro: IPR006077 Vinculin is a eukaryotic protein that seems to be involved in the attachment of the actin-based microfilaments to the plasma membrane. Vinculin is located at the cytoplasmic side of focal contacts or adhesion plaques []. In addition to actin, vinculin interacts with other structural proteins such as talin and alpha-actinins. Vinculin is a large protein of 116 kDa (about a 1000 residues). Structurally the protein consists of an acidic N-terminal domain of about 90 kDa separated from a basic C-terminal domain of about 25 kDa by a proline-rich region of about 50 residues. The central part of the N-terminal domain consists of a variable number (3 in vertebrates, 2 in Caenorhabditis elegans) of repeats of a 110 amino acids domain. Alpha-catenins are evolutionary related to vinculin IPR001033 from INTERPRO []. Catenins are proteins that associate with the cytoplasmic domain of a variety of cadherins. The association of catenins to cadherins produces a complex which is linked to the actin filament network, and which seems to be of primary importance for cadherins cell-adhesion properties. Three different types of catenins seem to exist: alpha, beta, and gamma. Alpha-catenins are proteins of about 100 kDa which are evolutionary related to vinculin. In terms of their structure the most significant differences are the absence, in alpha-catenin, of the repeated domain and of the proline-rich segment.; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0015629 actin cytoskeleton; PDB: 3S90_B 1TR2_B 2IBF_A 1RKC_A 3TJ5_A 3RF3_B 4DJ9_A 2GWW_A 2HSQ_A 3TJ6_A ....
Probab=51.98 E-value=7.4e+02 Score=33.25 Aligned_cols=124 Identities=11% Similarity=0.171 Sum_probs=60.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HhHHHhHHHhHHhhHhhHHHhhHHHHHhhh-----HHHHHhh
Q 001572 749 KSKELDNFKKTFKEEAAKEEKDALEKIAVILANLT---SRKTAMVSKASSNIQDTNIQQNKRLQNEIS-----SVQQVST 820 (1051)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~ 820 (1051)
..+.+.+....|.+++.+ |.+++.+++... ...-+.+..+...|+....+.-.--.--.. ....--.
T Consensus 513 ~e~~~~~~a~~F~~ha~~-----l~~vA~lva~~s~~d~~~v~~I~~aa~~l~~L~pqvi~Aa~~l~~~P~sk~A~e~le 587 (968)
T PF01044_consen 513 REENFEEKAQNFQEHADQ-----LVEVARLVAAMSCTDEETVKEIRHAAEQLEKLTPQVINAARILAANPSSKAAKEHLE 587 (968)
T ss_dssp CHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 344455555666666654 556777777643 445555556666666554433221111000 0011112
Q ss_pred HHHHHHHHHHHHhhhhh---hhhhhHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh
Q 001572 821 DARKELSKYIQNVESHF---MEDTFSAAESRAIMENSLQECSKTVDSSRQQWEYAQSYIRNL 879 (1051)
Q Consensus 821 ~~~~~~~~~~~~~e~~~---~e~~~~~~~~~~~m~~~lq~~~~~~~~~~~~~~~~~~~~~~l 879 (1051)
..+..|..-+...=.-+ .+-..+.+..-..|.+-+..|....... .+........++
T Consensus 588 ~~~~~W~~~v~~L~~~vd~i~d~~eFl~vSe~~i~~d~~~c~~Al~~~--d~~~~~~~a~~I 647 (968)
T PF01044_consen 588 VFREAWEDAVEDLTEAVDEITDVDEFLAVSEEHILKDVDKCEKALRSG--DPQELDRAASSI 647 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHH
Confidence 33555554444432222 2223355666677777777777776665 444444444444
No 351
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=51.41 E-value=4.1e+02 Score=30.10 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 620 THILESRIKRMSETYTAGLELLKELD 645 (1051)
Q Consensus 620 ~~~~~~~i~~~~~~~~~~~~~~~~~~ 645 (1051)
...|+..|.+++..+. +++.++.+.
T Consensus 223 ~~AwkneLsEINSI~~-gvEeLkKLA 247 (353)
T PF01540_consen 223 QEAWKNELSEINSIIK-GVEELKKLA 247 (353)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4445666666665443 554444443
No 352
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=51.38 E-value=8.4 Score=41.74 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=14.6
Q ss_pred CCceeeeccCCCCCccceecc
Q 001572 130 FNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 130 ~N~TIfAYGqTGSGKTyTM~G 150 (1051)
.+-.+++.|+.||||||.-..
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~a 38 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLALA 38 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHHH
T ss_pred hCCeEEEECCCCCcHHHHHHH
Confidence 455789999999999987643
No 353
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=51.23 E-value=4.2e+02 Score=30.16 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHH
Q 001572 531 EKSIIEQAKELRNELQNASEDITSLFSKLDQKD 563 (1051)
Q Consensus 531 e~~l~~~~~~L~~~l~~~~~d~~~l~~kl~rk~ 563 (1051)
...+......+...+.+...|-..|-.||++|.
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk 203 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKK 203 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777778888888889999998774
No 354
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=51.16 E-value=4.5e+02 Score=30.45 Aligned_cols=69 Identities=20% Similarity=0.169 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH
Q 001572 467 EVDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEFIISKLLCSEKSII 535 (1051)
Q Consensus 467 el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~~~~~e~~l~ 535 (1051)
.+..|...|.........+..++...+.......+....++.++.++......-+.++..++..+..+.
T Consensus 23 K~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lk 91 (309)
T PF09728_consen 23 KLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLK 91 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444454444443333333333333444333333
No 355
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.98 E-value=3.4e+02 Score=29.08 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Q 001572 452 EKIEQLENDLNLSEKEVDRFRELY 475 (1051)
Q Consensus 452 ~~i~~le~~l~~~~~el~~l~~~~ 475 (1051)
.++..+..+++...+++..+++.+
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i 92 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKI 92 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 356
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=50.55 E-value=1.6e+02 Score=32.32 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 483 LDLESELKECKINLENRSKALLDLQE 508 (1051)
Q Consensus 483 ~~l~~~l~~~~~~l~~~~~~l~~l~~ 508 (1051)
.+|.+++++++.++++.+..+..++.
T Consensus 152 eeL~~eleele~e~ee~~erlk~le~ 177 (290)
T COG4026 152 EELLKELEELEAEYEEVQERLKRLEV 177 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344443333333333333333
No 357
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=50.41 E-value=9.5 Score=39.90 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=16.9
Q ss_pred HHhhcCCCceeeeccCCCCCccce
Q 001572 124 NEVLDGFNCTVFAYGQTGTGKTYT 147 (1051)
Q Consensus 124 ~~vl~G~N~TIfAYGqTGSGKTyT 147 (1051)
+.++.|.| ++..++||+|||.+
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHH
Confidence 34455777 57788999999977
No 358
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=50.32 E-value=7.9 Score=48.54 Aligned_cols=43 Identities=23% Similarity=0.447 Sum_probs=30.7
Q ss_pred eEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCcccee
Q 001572 98 VFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 98 ~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM 148 (1051)
..+||.+++. ..... .++..+..++...++-||++|||||+..
T Consensus 150 p~~~~~iiGq----s~~~~----~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEIVGQ----ERAIK----ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhceeC----cHHHH----HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 3577877764 33333 3455556688888999999999999876
No 359
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=50.17 E-value=8.5 Score=44.63 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=20.4
Q ss_pred hhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 120 VPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 120 ~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
..++..++.+. +.|+..|.||||||.+|-.
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll~a 179 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFTNA 179 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHHHH
Confidence 34444444432 4577789999999999843
No 360
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=50.14 E-value=3.7e+02 Score=29.16 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 600 QQLRCMEEHAQSFLASKCDATHILESRIKRMSETYTAGLELLKEL 644 (1051)
Q Consensus 600 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 644 (1051)
+.+..++.+...+...+.....++..+..--+-.+...+..|.+.
T Consensus 114 qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~ 158 (201)
T PF13851_consen 114 QRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQ 158 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443333444444444443
No 361
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=50.01 E-value=5.3e+02 Score=30.99 Aligned_cols=10 Identities=20% Similarity=0.551 Sum_probs=5.2
Q ss_pred Eccccccccc
Q 001572 194 YNEDITDLLA 203 (1051)
Q Consensus 194 YnE~v~DLL~ 203 (1051)
|..++.||=.
T Consensus 74 y~~~l~ele~ 83 (395)
T PF10267_consen 74 YHKRLKELEQ 83 (395)
T ss_pred HHHHHHHHHh
Confidence 5555555543
No 362
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=49.84 E-value=7.5 Score=39.05 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=12.5
Q ss_pred eeeeccCCCCCcccee
Q 001572 133 TVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 133 TIfAYGqTGSGKTyTM 148 (1051)
.+--.|+||+||||+-
T Consensus 55 VlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFVS 70 (127)
T ss_pred EEEeecCCCCcHHHHH
Confidence 3446799999999964
No 363
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.56 E-value=4.9e+02 Score=31.47 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHhHHHHHHH
Q 001572 660 SSKVSSQTMAVEQFLV--TMVSEGKEVIEDIKNSLSQQKEL 698 (1051)
Q Consensus 660 ~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~ 698 (1051)
-.++.+-..+|...+. .....++.+++++.+.++.+++-
T Consensus 316 l~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV 356 (439)
T KOG2911|consen 316 LQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEV 356 (439)
T ss_pred HHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHH
Confidence 3355566666666666 23345888999999998887543
No 364
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=49.43 E-value=3.8e+02 Score=29.15 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=35.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 707 EEGLQRSWISSQEISKATMDFFNDIHRQAS-KLKTILEESQTEKSKELDNFKKTFKEEAAKEEKDALEKIAVIL 779 (1051)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 779 (1051)
-.++.+..+.-+.+......|++.++...- -|++.++.- .+.+.++.+.|+...+..+..|-...+.++
T Consensus 57 G~~L~~~s~~~r~i~~~~~~~~~~~~~~li~pLe~~~e~d----~k~i~~~~K~y~ke~k~~~~~l~K~~se~~ 126 (219)
T PF08397_consen 57 GDALMQISEVHRRIENELEEVFKAFHSELIQPLEKKLEED----KKYITQLEKDYEKEYKRKRDELKKAESELK 126 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444455555555555433 444444433 344556666776666666666555555544
No 365
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=49.41 E-value=3.9e+02 Score=29.22 Aligned_cols=38 Identities=13% Similarity=0.256 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q 001572 580 LDQSLKGLHKTILGSVSQQQQQLRCMEEHAQSFLASKC 617 (1051)
Q Consensus 580 l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 617 (1051)
+...++.+...+..-+.....+..+.+.....|...+.
T Consensus 136 l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKe 173 (202)
T PF06818_consen 136 LRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKE 173 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444455554444444444444555555555555444
No 366
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=49.39 E-value=4.4e+02 Score=29.86 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001572 620 THILESRIKRMSETYTAGL 638 (1051)
Q Consensus 620 ~~~~~~~i~~~~~~~~~~~ 638 (1051)
...|..+|..+++.-...+
T Consensus 122 Ia~L~rqlq~lk~~qqdEl 140 (258)
T PF15397_consen 122 IANLVRQLQQLKDSQQDEL 140 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333
No 367
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=49.21 E-value=5.5 Score=39.26 Aligned_cols=15 Identities=47% Similarity=0.603 Sum_probs=13.3
Q ss_pred eeeccCCCCCcccee
Q 001572 134 VFAYGQTGTGKTYTM 148 (1051)
Q Consensus 134 IfAYGqTGSGKTyTM 148 (1051)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999866
No 368
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=49.07 E-value=6.8 Score=43.89 Aligned_cols=17 Identities=47% Similarity=0.686 Sum_probs=14.2
Q ss_pred ceeeeccCCCCCcccee
Q 001572 132 CTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 132 ~TIfAYGqTGSGKTyTM 148 (1051)
-+|+-||++|||||.+-
T Consensus 152 knVLFyGppGTGKTm~A 168 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA 168 (368)
T ss_pred ceeEEECCCCccHHHHH
Confidence 46888999999998754
No 369
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=48.98 E-value=6.8 Score=38.50 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=13.3
Q ss_pred eeeccCCCCCcccee
Q 001572 134 VFAYGQTGTGKTYTM 148 (1051)
Q Consensus 134 IfAYGqTGSGKTyTM 148 (1051)
|+.+|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999865
No 370
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=48.96 E-value=3.6e+02 Score=28.71 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 621 HILESRIKRMSETYTAGLELLKELDNSM 648 (1051)
Q Consensus 621 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 648 (1051)
..|...+....+.+...+..|..++..+
T Consensus 113 ~~L~~~i~~~q~~~~~~i~~L~~f~~~l 140 (184)
T PF05791_consen 113 EDLQDQIQKNQDKVQALINELNDFKDKL 140 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555544443
No 371
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=48.71 E-value=6.8 Score=45.68 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=20.5
Q ss_pred hhHHHHhhcCCCceeeeccCCCCCccceecc
Q 001572 120 VPIVNEVLDGFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 120 ~plV~~vl~G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
..++..++. ..+.|+..|+||||||.+|..
T Consensus 152 ~~~l~~~v~-~~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 152 EAFLHACVV-GRLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHHH-cCCeEEEECCCCccHHHHHHH
Confidence 334444443 244578889999999999854
No 372
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=48.39 E-value=10 Score=44.88 Aligned_cols=43 Identities=30% Similarity=0.495 Sum_probs=28.7
Q ss_pred ecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccce
Q 001572 100 TFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYT 147 (1051)
Q Consensus 100 ~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyT 147 (1051)
+||.|+| |+.+.-. ..|+-.-+-.|--...+-||+.|+|||..
T Consensus 22 ~lde~vG----Q~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 22 SLDEVVG----QEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CHHHhcC----hHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 4555555 6666644 34444444467777888999999999863
No 373
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.38 E-value=7e+02 Score=31.95 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHhhhccC
Q 001572 864 SSRQQWEYAQSYIRNLNTSS 883 (1051)
Q Consensus 864 ~~~~~~~~~~~~~~~l~~~~ 883 (1051)
.-...|..+++.=.-|...+
T Consensus 378 ~~ve~W~sa~EeE~~lee~n 397 (660)
T KOG4302|consen 378 ERVEKWESACEEESWLEEYN 397 (660)
T ss_pred HHHHHHHHhhHHHHHHhccc
Confidence 34457888777666665544
No 374
>PRK10536 hypothetical protein; Provisional
Probab=48.32 E-value=10 Score=42.61 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=29.1
Q ss_pred eEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceec
Q 001572 98 VFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 98 ~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
.|.|..|-+-+..|..... .+.+ +.-++..|+.||||||...
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred hcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHHH
Confidence 4666667776666655443 2223 3488999999999999764
No 375
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=48.30 E-value=10 Score=42.60 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=23.1
Q ss_pred chhhhhhhhhhhHHHHhhc--CCCceeeeccCCCCCccceec
Q 001572 110 QQRSIYDQAIVPIVNEVLD--GFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 110 sQ~~Vy~~~v~plV~~vl~--G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
.|+++.+. +..++..... +....++-||++|+|||+...
T Consensus 8 G~~~~~~~-l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 8 GQEKVKEQ-LQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 35565554 3334433222 222346779999999998773
No 376
>PF14992 TMCO5: TMCO5 family
Probab=48.10 E-value=4.8e+02 Score=29.91 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=12.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhH
Q 001572 540 ELRNELQNASEDITSLFSKLDQK 562 (1051)
Q Consensus 540 ~L~~~l~~~~~d~~~l~~kl~rk 562 (1051)
.|...-+..+.-+..|+.|++++
T Consensus 74 ~LE~~ne~l~~~~~elq~k~~e~ 96 (280)
T PF14992_consen 74 KLEKENEHLSKSVQELQRKQDEQ 96 (280)
T ss_pred HHhhhhHhhhhhhhhhhhhhccc
Confidence 33333444455556777777654
No 377
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=48.00 E-value=6.4e+02 Score=31.34 Aligned_cols=17 Identities=12% Similarity=0.323 Sum_probs=9.7
Q ss_pred cCccchhhchhhhccccc
Q 001572 1005 RTPAFENLQVENISDNNR 1022 (1051)
Q Consensus 1005 Rt~~~e~L~~~~~~~~~~ 1022 (1051)
|-.+.+.+ ...|.+...
T Consensus 438 rl~~le~i-~~~~~gv~~ 454 (514)
T TIGR03319 438 RLEKLEEI-ANSFEGVEK 454 (514)
T ss_pred HHHHHHHH-HHhCCCchh
Confidence 44556666 666665544
No 378
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=47.67 E-value=6.1 Score=41.88 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=13.0
Q ss_pred eeeeccCCCCCccceec
Q 001572 133 TVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 133 TIfAYGqTGSGKTyTM~ 149 (1051)
-++.+|.||||||.++.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57889999999999884
No 379
>PRK10869 recombination and repair protein; Provisional
Probab=47.54 E-value=6.6e+02 Score=31.40 Aligned_cols=17 Identities=6% Similarity=0.071 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001572 620 THILESRIKRMSETYTA 636 (1051)
Q Consensus 620 ~~~~~~~i~~~~~~~~~ 636 (1051)
..++..++..+++.+..
T Consensus 343 l~~Le~e~~~l~~~l~~ 359 (553)
T PRK10869 343 LETLALAVEKHHQQALE 359 (553)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 380
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.44 E-value=9.8 Score=45.23 Aligned_cols=45 Identities=29% Similarity=0.434 Sum_probs=26.6
Q ss_pred ecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceec
Q 001572 100 TFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 100 ~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
+||.+++ |..+... ..++...+-.+.-..++-||++|+|||++..
T Consensus 10 ~l~d~vG----q~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 10 TLDEVVG----QEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CHHHhcC----cHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 3555554 4444432 2223333335555567779999999998763
No 381
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.27 E-value=7.5e+02 Score=31.97 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhCCCCCcCC
Q 001572 329 TLGRVINALVEHSAHIPYR 347 (1051)
Q Consensus 329 aLg~VI~aL~~~~~hIPYR 347 (1051)
++-.-|++|..+++.|.||
T Consensus 430 a~~~El~SL~k~~SNI~~~ 448 (1104)
T COG4913 430 AADQELSSLSKGSSNIEYR 448 (1104)
T ss_pred HHHHHHHHHhccccchHHH
Confidence 3444455555555555554
No 382
>PTZ00424 helicase 45; Provisional
Probab=47.25 E-value=10 Score=44.24 Aligned_cols=25 Identities=40% Similarity=0.692 Sum_probs=18.7
Q ss_pred HHHHhhcCCCceeeeccCCCCCcccee
Q 001572 122 IVNEVLDGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 122 lV~~vl~G~N~TIfAYGqTGSGKTyTM 148 (1051)
.+..+++|.|. +..++||||||.+.
T Consensus 58 ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 58 GIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34456788885 46789999999765
No 383
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=47.23 E-value=1e+02 Score=35.95 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=5.6
Q ss_pred hhHHHHHHHHHHH
Q 001572 325 KSLLTLGRVINAL 337 (1051)
Q Consensus 325 kSL~aLg~VI~aL 337 (1051)
..+-+|..-..+|
T Consensus 86 ~a~P~L~~A~~al 98 (344)
T PF12777_consen 86 EAEPALEEAQEAL 98 (344)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 384
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=47.16 E-value=8 Score=45.21 Aligned_cols=45 Identities=29% Similarity=0.464 Sum_probs=30.0
Q ss_pred eeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccceec
Q 001572 97 RVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 97 k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
..|.|+.|-|.+ ++-.. ++..+.+..-+.|+-+|.+|||||+.+-
T Consensus 12 ~~~pf~~ivGq~----~~k~a----l~~~~~~p~~~~vli~G~~GtGKs~~ar 56 (350)
T CHL00081 12 PVFPFTAIVGQE----EMKLA----LILNVIDPKIGGVMIMGDRGTGKSTTIR 56 (350)
T ss_pred CCCCHHHHhChH----HHHHH----HHHhccCCCCCeEEEEcCCCCCHHHHHH
Confidence 479999998844 33333 3333333333468899999999999873
No 385
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.02 E-value=6.1e+02 Score=30.86 Aligned_cols=42 Identities=21% Similarity=0.399 Sum_probs=20.3
Q ss_pred HHHHHHH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 733 RQASKLK-TILEESQTEKSKELDNFKKTFKEEAAKEEKDALEKI 775 (1051)
Q Consensus 733 ~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 775 (1051)
.+...|+ ++=.|.+.....+|+.+...|... ..+-++|+..|
T Consensus 476 revrdlE~qI~~E~~k~~l~slEkl~~Dyqai-rqen~~L~~~i 518 (521)
T KOG1937|consen 476 REVRDLESQIYVEEQKQYLKSLEKLHQDYQAI-RQENDQLFSEI 518 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3344444 333344444555666666666543 33444555544
No 386
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=47.01 E-value=5e+02 Score=30.80 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=4.2
Q ss_pred HHHHHHHHh
Q 001572 539 KELRNELQN 547 (1051)
Q Consensus 539 ~~L~~~l~~ 547 (1051)
..||.-+++
T Consensus 216 kDWR~hleq 224 (359)
T PF10498_consen 216 KDWRSHLEQ 224 (359)
T ss_pred chHHHHHHH
Confidence 445544443
No 387
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.99 E-value=4.2e+02 Score=34.53 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=3.9
Q ss_pred CCCCcCCC
Q 001572 341 SAHIPYRD 348 (1051)
Q Consensus 341 ~~hIPYRd 348 (1051)
+.+||...
T Consensus 352 G~~Vpa~~ 359 (771)
T TIGR01069 352 GIPIPANE 359 (771)
T ss_pred CCCccCCc
Confidence 34555544
No 388
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=46.98 E-value=4.3e+02 Score=30.18 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Q 001572 450 RIEKIEQLENDLNLSEKEVDRFRE 473 (1051)
Q Consensus 450 ~~~~i~~le~~l~~~~~el~~l~~ 473 (1051)
++.++++-+..+..++.+|.+|+.
T Consensus 73 LkakLkes~~~l~dRetEI~eLks 96 (305)
T PF15290_consen 73 LKAKLKESENRLHDRETEIDELKS 96 (305)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344444444444444444444443
No 389
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=46.98 E-value=17 Score=40.16 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=25.8
Q ss_pred CCCcchhhhhhhhhhhHHHHhhc-C-CCceeeeccCCCCCccce
Q 001572 106 GPKAQQRSIYDQAIVPIVNEVLD-G-FNCTVFAYGQTGTGKTYT 147 (1051)
Q Consensus 106 ~~~asQ~~Vy~~~v~plV~~vl~-G-~N~TIfAYGqTGSGKTyT 147 (1051)
+.-..|+++-.. ...+++.+.. | .-..++-||+.|+|||..
T Consensus 24 ~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 24 DEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 334458888865 5667776653 2 234578899999999764
No 390
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=46.78 E-value=13 Score=47.25 Aligned_cols=18 Identities=44% Similarity=0.643 Sum_probs=15.4
Q ss_pred CceeeeccCCCCCcccee
Q 001572 131 NCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 131 N~TIfAYGqTGSGKTyTM 148 (1051)
|-.++.+|+||||||.-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 567888999999999876
No 391
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=46.66 E-value=7.8e+02 Score=31.95 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001572 411 KDLYLEIERMKEDVRAAR 428 (1051)
Q Consensus 411 k~l~~EI~~Lk~eL~~~r 428 (1051)
..|..+++.||.++..++
T Consensus 432 ~~Le~elekLk~eilKAk 449 (762)
T PLN03229 432 RELEGEVEKLKEQILKAK 449 (762)
T ss_pred ccHHHHHHHHHHHHHhcc
Confidence 377888999999987775
No 392
>PRK13764 ATPase; Provisional
Probab=46.43 E-value=9.5 Score=47.64 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=17.8
Q ss_pred CCCceeeeccCCCCCccceecc
Q 001572 129 GFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 129 G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
.....|+..|+||||||+++..
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHH
Confidence 3345589999999999999854
No 393
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=46.30 E-value=8.7 Score=42.57 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=15.1
Q ss_pred ceeeeccCCCCCccceec
Q 001572 132 CTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 132 ~TIfAYGqTGSGKTyTM~ 149 (1051)
..++-||++|||||++..
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 457789999999998773
No 394
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=46.23 E-value=25 Score=41.29 Aligned_cols=94 Identities=20% Similarity=0.367 Sum_probs=51.4
Q ss_pred CceEEEEEeCCCCchhhh-cCCCcEEEecCCcceE-EEEeccCCCC-------cCeeEecCcccCCCcchhhhhhhhhhh
Q 001572 51 VNVQVLLRCRPLSDDEQK-SNVPRVISCSEDKREV-TVLQSVANKQ-------IDRVFTFDKVFGPKAQQRSIYDQAIVP 121 (1051)
Q Consensus 51 ~nVkV~vRvRP~~~~E~~-~~~~~vv~~~~~~~~v-~v~~~~~~~~-------~~k~F~FD~VF~~~asQ~~Vy~~~v~p 121 (1051)
+.-+.+|+|.|+-+++.- .|.. |.++.+.-.+ .++.+..... ..-.-+|+.|=|-+..-++|.+.+-.|
T Consensus 93 ~g~~~vV~i~~~vd~~~L~pG~r--Val~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELP 170 (406)
T COG1222 93 TGPKFVVNILSFVDRDLLEPGMR--VALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELP 170 (406)
T ss_pred CCCeEEEeccCCcCHHHcCCCCE--EEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhccc
Confidence 455788999998777643 3333 3333222111 2221111100 011235556656556567777777777
Q ss_pred HHHH-hhc--CCC--ceeeeccCCCCCccc
Q 001572 122 IVNE-VLD--GFN--CTVFAYGQTGTGKTY 146 (1051)
Q Consensus 122 lV~~-vl~--G~N--~TIfAYGqTGSGKTy 146 (1051)
+.+- .+. |.. -.|+-||+.|||||-
T Consensus 171 L~~PElF~~~GI~PPKGVLLYGPPGTGKTL 200 (406)
T COG1222 171 LKNPELFEELGIDPPKGVLLYGPPGTGKTL 200 (406)
T ss_pred ccCHHHHHHcCCCCCCceEeeCCCCCcHHH
Confidence 7643 232 544 358999999999964
No 395
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=45.84 E-value=5.8e+02 Score=30.26 Aligned_cols=28 Identities=11% Similarity=0.298 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 621 HILESRIKRMSETYTAGLELLKELDNSM 648 (1051)
Q Consensus 621 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 648 (1051)
..|..-|..+...+.+.+..+....+.+
T Consensus 353 ~~~~~~L~~ve~~~~~N~~~i~~n~~~l 380 (388)
T PF04912_consen 353 KKWEELLNKVEEKFKENMETIEKNVKKL 380 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 396
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=45.82 E-value=8.1 Score=40.43 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.6
Q ss_pred ceeeeccCCCCCcccee
Q 001572 132 CTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 132 ~TIfAYGqTGSGKTyTM 148 (1051)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999965
No 397
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=45.73 E-value=11 Score=45.06 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=17.5
Q ss_pred HHhhcCCCceeeeccCCCCCccce
Q 001572 124 NEVLDGFNCTVFAYGQTGTGKTYT 147 (1051)
Q Consensus 124 ~~vl~G~N~TIfAYGqTGSGKTyT 147 (1051)
..+++|.| +++.++||||||.+
T Consensus 36 ~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 36 PAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHhcCCC--EEEECCCCCcHHHH
Confidence 34567887 67788999999975
No 398
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=45.22 E-value=8.1e+02 Score=31.76 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001572 475 YLTEQEQKLDLESE---LKECKINLENRSKALLDLQEKHMIALSTLKKKE 521 (1051)
Q Consensus 475 ~~~~~~~~~~l~~~---l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~ 521 (1051)
|....+++..|++. |+..+.+++..+.++..++++...++.++.+-.
T Consensus 99 yselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 99 YSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555543 455566777777888888777777766665543
No 399
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=45.22 E-value=4.8e+02 Score=29.12 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=9.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 001572 538 AKELRNELQNASEDITSLFSKL 559 (1051)
Q Consensus 538 ~~~L~~~l~~~~~d~~~l~~kl 559 (1051)
+..|...+......|..+..++
T Consensus 89 a~~L~~~i~~l~~~i~~l~~~~ 110 (264)
T PF06008_consen 89 AQDLEQFIQNLQDNIQELIEQV 110 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 400
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=45.03 E-value=31 Score=43.68 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=0.0
Q ss_pred CccccccCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 001572 6 PDQFRKVGTGLTPSPSPFL----TPRPERRRPESRGSDWNSNRHDRDKEVN 52 (1051)
Q Consensus 6 ~~~~~~~~~g~~~s~~p~~----~p~~~~~~~~~~~~~~~s~~~~~~~~~n 52 (1051)
|||--++|+|..|+|+|.+ .|.|+.++|.+.+...+..-....++.+
T Consensus 546 ppPPlpggag~PPPPpplPg~aG~PPpPppppg~~gppPPPpp~g~~Gg~p 596 (1102)
T KOG1924|consen 546 PPPPLPGGAGPPPPPPPLPGIAGGPPPPPPPPGGGGPPPPPPPGGFLGGPP 596 (1102)
T ss_pred CCCCCCCCCCCCccCCCCCcccCCCCccCCCCCCCCCCCcCCCCCCCCCCC
No 401
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=44.88 E-value=8.2 Score=43.57 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=14.8
Q ss_pred eeeeccCCCCCccceecc
Q 001572 133 TVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 133 TIfAYGqTGSGKTyTM~G 150 (1051)
.|.-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 566679999999999953
No 402
>PRK06547 hypothetical protein; Provisional
Probab=44.78 E-value=15 Score=38.40 Aligned_cols=29 Identities=31% Similarity=0.357 Sum_probs=19.2
Q ss_pred hhHHHHhhcCCCceeeeccCCCCCcccee
Q 001572 120 VPIVNEVLDGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 120 ~plV~~vl~G~N~TIfAYGqTGSGKTyTM 148 (1051)
..++..+..+.---|..+|.+|||||+.-
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 33444544444445666799999999865
No 403
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=44.53 E-value=8.8 Score=36.60 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=13.0
Q ss_pred eeeccCCCCCcccee
Q 001572 134 VFAYGQTGTGKTYTM 148 (1051)
Q Consensus 134 IfAYGqTGSGKTyTM 148 (1051)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 577899999999866
No 404
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=44.53 E-value=1.5e+02 Score=38.17 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 620 THILESRIKRMSETYTAGLELLKELDN 646 (1051)
Q Consensus 620 ~~~~~~~i~~~~~~~~~~~~~~~~~~~ 646 (1051)
...+.++...+++.+.....++.+.+-
T Consensus 615 ~~~~ekr~~RLkevf~~ks~eFr~av~ 641 (722)
T PF05557_consen 615 LASAEKRNQRLKEVFKAKSQEFREAVY 641 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666666555555443
No 405
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.52 E-value=3.8e+02 Score=27.84 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 001572 413 LYLEIERMKED 423 (1051)
Q Consensus 413 l~~EI~~Lk~e 423 (1051)
+..+|..|+.+
T Consensus 77 ld~ei~~L~~e 87 (169)
T PF07106_consen 77 LDAEIKELREE 87 (169)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 406
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=44.49 E-value=12 Score=45.96 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=23.2
Q ss_pred hhhHHHHhhcCCC--ceeeeccCCCCCccceec
Q 001572 119 IVPIVNEVLDGFN--CTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 119 v~plV~~vl~G~N--~TIfAYGqTGSGKTyTM~ 149 (1051)
|+..++..+.|.. -.++-+|++|+|||.|+.
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~ 63 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVK 63 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHHH
Confidence 5566666665553 467789999999999983
No 407
>PRK04195 replication factor C large subunit; Provisional
Probab=44.40 E-value=10 Score=45.97 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=21.9
Q ss_pred hhhHHHHhhcCC-CceeeeccCCCCCccceec
Q 001572 119 IVPIVNEVLDGF-NCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 119 v~plV~~vl~G~-N~TIfAYGqTGSGKTyTM~ 149 (1051)
+..++.....|. .-.++-||++|+|||++..
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 444455555554 4578889999999998773
No 408
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=44.30 E-value=5.6e+02 Score=29.65 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 580 LDQSLKGLHKTILGSVSQQQQQLRCMEEHAQSFLASKCDATHILESRIKRMSETYTAGLELLKELDN 646 (1051)
Q Consensus 580 l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 646 (1051)
+.+.+.+|+.-|...--.+..+++.+.++--.+|..+.+..++|+.......++-..+|.+|....+
T Consensus 187 ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK 253 (302)
T PF07139_consen 187 IKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELRADIK 253 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3444455555555555567778888888888888888888888888888888877777766554443
No 409
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=44.28 E-value=13 Score=44.85 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=21.6
Q ss_pred ccCCCcceeEEeecCCCCCChHhhHHHHHHHHHh
Q 001572 358 SLGGKTKTCIIATISPSAHSLEETMSTLDYAYRA 391 (1051)
Q Consensus 358 SLGGnskT~mIatISPs~~~~eETLsTL~fA~RA 391 (1051)
.+.-..+..||||+..++.. +..|.+|-|=
T Consensus 319 ~f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrR 348 (459)
T PRK11331 319 RFYVPENVYIIGLMNTADRS----LAVVDYALRR 348 (459)
T ss_pred cccCCCCeEEEEecCccccc----hhhccHHHHh
Confidence 35567899999999998864 3456666543
No 410
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=44.15 E-value=9.3 Score=45.29 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=16.4
Q ss_pred CceeeeccCCCCCccceec
Q 001572 131 NCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 131 N~TIfAYGqTGSGKTyTM~ 149 (1051)
...|+.+|+||+|||.|+-
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3578899999999999984
No 411
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=44.04 E-value=6.9e+02 Score=30.58 Aligned_cols=29 Identities=34% Similarity=0.727 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhH
Q 001572 534 IIEQAKELRNELQNASEDITSLFSKLDQK 562 (1051)
Q Consensus 534 l~~~~~~L~~~l~~~~~d~~~l~~kl~rk 562 (1051)
+...+..++..+.....++..++.+++..
T Consensus 31 i~~~~~~l~~~l~~~d~~i~~~~~~l~~d 59 (473)
T PF14643_consen 31 ILEAGEDLKQKLAESDEEIEEIFSKLEDD 59 (473)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcCc
Confidence 33445556666666666666666666544
No 412
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=43.90 E-value=6.6e+02 Score=32.90 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=4.5
Q ss_pred hhCCCCCcCC
Q 001572 338 VEHSAHIPYR 347 (1051)
Q Consensus 338 ~~~~~hIPYR 347 (1051)
+..+.+||..
T Consensus 354 aq~G~~vpa~ 363 (782)
T PRK00409 354 AKSGLPIPAN 363 (782)
T ss_pred HHhCCCcccC
Confidence 3334455554
No 413
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=43.73 E-value=6.7e+02 Score=30.35 Aligned_cols=24 Identities=8% Similarity=0.009 Sum_probs=10.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHH
Q 001572 613 LASKCDATHILESRIKRMSETYTA 636 (1051)
Q Consensus 613 ~~~~~~~~~~~~~~i~~~~~~~~~ 636 (1051)
+.+-+...-+.++.+.++...+-+
T Consensus 392 lDdVD~kIleak~al~evtt~lrE 415 (575)
T KOG4403|consen 392 LDDVDHKILEAKSALSEVTTLLRE 415 (575)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444333
No 414
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=43.56 E-value=15 Score=41.31 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=16.5
Q ss_pred cCCCceeeeccCCCCCcccee
Q 001572 128 DGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 128 ~G~N~TIfAYGqTGSGKTyTM 148 (1051)
.|...-++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 444445788999999999877
No 415
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=43.48 E-value=4.1e+02 Score=27.78 Aligned_cols=218 Identities=17% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------HHHHHHHHH
Q 001572 413 LYLEIERMKEDVRAARDKNGVYVPHERYAQEEAEKKARIEKIEQLENDLNLSEKEVDRFRELYL-------TEQEQKLDL 485 (1051)
Q Consensus 413 l~~EI~~Lk~eL~~~r~~~g~~~~~e~~~~~e~e~~~~~~~i~~le~~l~~~~~el~~l~~~~~-------~~~~~~~~l 485 (1051)
+.+-|.|.++.+...-.........+.|...+.+-..+...+..+...+..--..+..+..... .......++
T Consensus 1 ~~K~~~R~~q~~~~k~g~~~~t~~D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 80 (229)
T PF03114_consen 1 FKKKINRAKQRVKQKLGKSEKTEIDEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIEL 80 (229)
T ss_dssp -HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhH
Q 001572 486 ESELKECKI---NLENRSKALLDLQEKHMIALSTLKKKEFIISKLLCSEKSIIEQAKELRNELQNASEDITSLFSKLDQK 562 (1051)
Q Consensus 486 ~~~l~~~~~---~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl~rk 562 (1051)
-.....-.. .+.........+..........+... ++..+..-- .....+..++..++...-|.+....++...
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~--vi~pl~~~~-~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~ 157 (229)
T PF03114_consen 81 GSEFSDDSSLGNALEKFGEAMQEIEEARKELESQIEST--VIDPLKEFL-KEFKEIKKLIKKREKKRLDYDSARSKLEKL 157 (229)
T ss_dssp HHCTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--THHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHH
Q 001572 563 DRMEAENQSLVLSFGSQLDQSLKGLHKTILGSVSQQQQQLRCMEEHAQSFLASKCDAT-HILESRIKRMSETYTAGLELL 641 (1051)
Q Consensus 563 ~~~~~~n~~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~ 641 (1051)
.+-...... ...+..........-..+...+..|.......+ ..+..-+..-..-+....+.+
T Consensus 158 ~~~~~~~~~----------------~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l 221 (229)
T PF03114_consen 158 RKKKSKSSK----------------EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQIL 221 (229)
T ss_dssp HTTSSBTHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhccccc----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 001572 642 KELDNSMQ 649 (1051)
Q Consensus 642 ~~~~~~~~ 649 (1051)
..+...+.
T Consensus 222 ~~l~~~l~ 229 (229)
T PF03114_consen 222 EELQPQLA 229 (229)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
No 416
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=43.43 E-value=7.5e+02 Score=30.84 Aligned_cols=86 Identities=13% Similarity=0.162 Sum_probs=42.7
Q ss_pred hHHhhHhhHHHh----hHHHHHhhhHHHHHhhHHHHHHHHHHHHhhhhhhh-hhhHHHhhHHHHHHHHHHHHhhhh---h
Q 001572 793 ASSNIQDTNIQQ----NKRLQNEISSVQQVSTDARKELSKYIQNVESHFME-DTFSAAESRAIMENSLQECSKTVD---S 864 (1051)
Q Consensus 793 ~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e-~~~~~~~~~~~m~~~lq~~~~~~~---~ 864 (1051)
++..|+...... ..-|..++..+...+.+ -.-+..=+......+.+ ++.+.+....|...+-..|.+.+- .
T Consensus 413 a~~~l~~~l~~~~~~~~~p~~~el~~l~~~~~~-d~~v~~~l~~l~~~a~~~Gv~s~~~L~~rf~~v~~~~r~~~l~~~~ 491 (582)
T PF09731_consen 413 AVDALKSALDSGNAGSPRPFEDELRALKELAPD-DELVDAALSSLPPEAAQRGVPSEAQLRNRFERVAPEVRRASLVPPE 491 (582)
T ss_pred HHHHHHHHHHcCCCcCCCCHHHHHHHHHHhCCC-ChHHHHHHHhcCHHHhhCCCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444444444333 14555666666555322 11111111222333333 777778888888777777665532 3
Q ss_pred hhHHHHHHHHHHHhh
Q 001572 865 SRQQWEYAQSYIRNL 879 (1051)
Q Consensus 865 ~~~~~~~~~~~~~~l 879 (1051)
.+.-|.++=..|.++
T Consensus 492 ~~g~~~~~~s~~~S~ 506 (582)
T PF09731_consen 492 GAGLLGHLLSYLFSL 506 (582)
T ss_pred CCCHHHHHHHHHHhe
Confidence 344555555555544
No 417
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=43.42 E-value=5e+02 Score=28.83 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001572 602 LRCMEEHAQSFLASKCDATHILESRIKRMSET 633 (1051)
Q Consensus 602 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 633 (1051)
+..+.+..++.+.+..+++++..+.++.+..-
T Consensus 122 i~k~r~e~~~ml~evK~~~E~y~k~~k~~~~g 153 (230)
T PF03904_consen 122 IKKVREENKSMLQEVKQSHEKYQKRQKSMYKG 153 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444555555555554443
No 418
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=43.14 E-value=4.8e+02 Score=28.56 Aligned_cols=12 Identities=33% Similarity=0.612 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 001572 412 DLYLEIERMKED 423 (1051)
Q Consensus 412 ~l~~EI~~Lk~e 423 (1051)
++..-+..++.+
T Consensus 6 d~d~~~~~~~~e 17 (207)
T PF05010_consen 6 DLDAAIKKVQEE 17 (207)
T ss_pred hHHHHHHHHHHH
Confidence 334444444444
No 419
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=42.79 E-value=3.6e+02 Score=27.04 Aligned_cols=17 Identities=41% Similarity=0.481 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001572 483 LDLESELKECKINLENR 499 (1051)
Q Consensus 483 ~~l~~~l~~~~~~l~~~ 499 (1051)
..++..|.+++..|+++
T Consensus 30 ~~le~qL~E~~~al~El 46 (119)
T COG1382 30 QQLEAQLKEIEKALEEL 46 (119)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 420
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=42.71 E-value=19 Score=41.93 Aligned_cols=28 Identities=43% Similarity=0.749 Sum_probs=21.2
Q ss_pred hHHHHhhcCCC---ceeeeccCCCCCccceec
Q 001572 121 PIVNEVLDGFN---CTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 121 plV~~vl~G~N---~TIfAYGqTGSGKTyTM~ 149 (1051)
|.++..|.|.- .|||+ |+||||||.-|.
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFls 291 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLS 291 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEeh
Confidence 56677777753 57765 999999998774
No 421
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=42.58 E-value=4.2e+02 Score=27.67 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=9.6
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q 001572 554 SLFSKLDQKDRMEAENQSL 572 (1051)
Q Consensus 554 ~l~~kl~rk~~~~~~n~~~ 572 (1051)
.....|..+-.+..-|...
T Consensus 47 ~~i~~ia~qt~lLalNAsI 65 (213)
T PF00015_consen 47 SLINEIAEQTNLLALNASI 65 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHhhhhhcc
Confidence 3334445555556666544
No 422
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=42.40 E-value=14 Score=43.98 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=18.4
Q ss_pred HHHhhcCCCceeeeccCCCCCccce
Q 001572 123 VNEVLDGFNCTVFAYGQTGTGKTYT 147 (1051)
Q Consensus 123 V~~vl~G~N~TIfAYGqTGSGKTyT 147 (1051)
+..+++|-| +++.++||||||.+
T Consensus 32 i~~~~~g~d--~l~~apTGsGKT~~ 54 (434)
T PRK11192 32 IPPALDGRD--VLGSAPTGTGKTAA 54 (434)
T ss_pred HHHHhCCCC--EEEECCCCChHHHH
Confidence 345667876 78889999999986
No 423
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=42.37 E-value=6.1e+02 Score=29.50 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 001572 681 GKEVIEDIKNSLSQQKELLALSA 703 (1051)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~ 703 (1051)
+..+-++|...+...+.....|.
T Consensus 312 G~~FY~dL~~~v~~~~~~~~~f~ 334 (337)
T cd09234 312 GIDFYKKLEGNVSKLLQRIKSVC 334 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 424
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=42.35 E-value=15 Score=42.17 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=15.1
Q ss_pred ceeeeccCCCCCccceec
Q 001572 132 CTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 132 ~TIfAYGqTGSGKTyTM~ 149 (1051)
..++-||++|+|||+...
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 357789999999999874
No 425
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.87 E-value=7.9e+02 Score=30.69 Aligned_cols=64 Identities=25% Similarity=0.439 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001572 409 LLKDLYLEIERMKEDVRAARDKNGVYVPHERYAQ-EEAEKKARIEKIEQLENDLNLSEKEVDRFRELY 475 (1051)
Q Consensus 409 lik~l~~EI~~Lk~eL~~~r~~~g~~~~~e~~~~-~e~e~~~~~~~i~~le~~l~~~~~el~~l~~~~ 475 (1051)
-+..|+.||++|-.+|......- +....|-. .-.++..+..+.++|+...+....++..+++.+
T Consensus 9 ~ve~lr~eierLT~el~q~t~e~---~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal 73 (772)
T KOG0999|consen 9 EVEKLRQEIERLTEELEQTTEEK---IQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEAL 73 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999988887654311 00011111 112233344555555555555555555554433
No 426
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=41.70 E-value=6.2e+02 Score=29.41 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=12.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 001572 686 EDIKNSLSQQKELLALSAQQQEE 708 (1051)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~ 708 (1051)
+.+..++...+.++.++.+|+..
T Consensus 225 e~~~shI~~Lr~EV~RLR~qL~~ 247 (310)
T PF09755_consen 225 ERLSSHIRSLRQEVSRLRQQLAA 247 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666665555553
No 427
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=41.38 E-value=1.4e+02 Score=36.70 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHhhhccChHHHHHHHH
Q 001572 866 RQQWEYAQSYIRNLNTSSTAEIKSAIK 892 (1051)
Q Consensus 866 ~~~~~~~~~~~~~l~~~~~~~~~~~v~ 892 (1051)
..+|+.|- .-|-+..+.++.=+++
T Consensus 463 ~idWrraa---l~lPkaR~tE~HFllr 486 (907)
T KOG2264|consen 463 LIDWRRAA---LRLPKARLTEAHFLLR 486 (907)
T ss_pred HHHHHHHh---hhCCccccchHHHHHH
Confidence 44788775 3344566666655554
No 428
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=41.30 E-value=10 Score=46.18 Aligned_cols=51 Identities=25% Similarity=0.361 Sum_probs=29.4
Q ss_pred eEecCcccCCCcchhhhhhhhhhhHHHH-hhc--C--CCceeeeccCCCCCccceec
Q 001572 98 VFTFDKVFGPKAQQRSIYDQAIVPIVNE-VLD--G--FNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 98 ~F~FD~VF~~~asQ~~Vy~~~v~plV~~-vl~--G--~N~TIfAYGqTGSGKTyTM~ 149 (1051)
..+||.|.+.+.-...+.+ .+..+-.. .+. | ..-.|+-||++|||||+..-
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 4678888876654444432 22221100 111 2 22358889999999999873
No 429
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=41.24 E-value=5.6e+02 Score=28.76 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 001572 666 QTMAVEQFL 674 (1051)
Q Consensus 666 ~~~~~~~~l 674 (1051)
....||++|
T Consensus 142 qQ~ELE~~L 150 (254)
T KOG2196|consen 142 QQQELEDLL 150 (254)
T ss_pred HHHHHHHHH
Confidence 333344433
No 430
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=41.03 E-value=17 Score=41.20 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=23.4
Q ss_pred hhhhhHHHHhhcCCCceeeeccCCCCCccceec
Q 001572 117 QAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 117 ~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM~ 149 (1051)
..+.|++ ..+.--+..|--||++++|||.++.
T Consensus 180 afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~~ 211 (286)
T PF06048_consen 180 AFAAPLL-SLLGVEGFGFHLYGQSSSGKTTALQ 211 (286)
T ss_pred HHHHHHH-HHhCCCceEEEEEeCCCCCHHHHHH
Confidence 3355555 4555666788899999999998874
No 431
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=41.02 E-value=9.9 Score=44.70 Aligned_cols=38 Identities=34% Similarity=0.583 Sum_probs=27.6
Q ss_pred eeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhcccCcccEEEEEEEEcc
Q 001572 133 TVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQNADYSMKVSFLELYNE 196 (1051)
Q Consensus 133 TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~~~~~sV~vS~lEIYnE 196 (1051)
.|+-||.+||||||++ +.+|+..+ .-.|++.++|.|.=
T Consensus 32 ~~~iyG~sgTGKT~~~----------------------r~~l~~~n----~~~vw~n~~ecft~ 69 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLV----------------------RQLLRKLN----LENVWLNCVECFTY 69 (438)
T ss_pred eEEEeccCCCchhHHH----------------------HHHHhhcC----CcceeeehHHhccH
Confidence 3588999999999976 45565542 23578888888764
No 432
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.95 E-value=11 Score=44.53 Aligned_cols=19 Identities=37% Similarity=0.398 Sum_probs=16.2
Q ss_pred CceeeeccCCCCCccceec
Q 001572 131 NCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 131 N~TIfAYGqTGSGKTyTM~ 149 (1051)
...+.-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4577789999999999984
No 433
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=40.81 E-value=4.5e+02 Score=27.52 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001572 491 ECKINLENRSKALLDLQ 507 (1051)
Q Consensus 491 ~~~~~l~~~~~~l~~l~ 507 (1051)
.+..++++...+|..+.
T Consensus 53 ~l~~kIeERn~eL~~Lk 69 (177)
T PF13870_consen 53 QLNEKIEERNKELLKLK 69 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444433
No 434
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=40.75 E-value=15 Score=45.20 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=29.4
Q ss_pred eeEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCcccee
Q 001572 97 RVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 97 k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM 148 (1051)
+..+|+.+++.+.. +..+...++.+....|+-||++|||||+.-
T Consensus 60 rp~~f~~iiGqs~~--------i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 60 RPKSFDEIIGQEEG--------IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CcCCHHHeeCcHHH--------HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 34578888876532 233333445566677888999999998754
No 435
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=40.69 E-value=34 Score=42.04 Aligned_cols=45 Identities=29% Similarity=0.368 Sum_probs=30.8
Q ss_pred eEecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCcccee
Q 001572 98 VFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 98 ~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM 148 (1051)
.+.||.+++.+..=..+++. +.. +...+..|+-+|.+||||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~~-----~~~-~a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQ-----ARV-VARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHH-----HHH-HhCcCCCEEEECCCCccHHHHH
Confidence 47888888866543334332 222 2467889999999999997654
No 436
>PRK04328 hypothetical protein; Provisional
Probab=40.54 E-value=18 Score=40.10 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=23.1
Q ss_pred hhhHHHHhhcC---CCceeeeccCCCCCccce
Q 001572 119 IVPIVNEVLDG---FNCTVFAYGQTGTGKTYT 147 (1051)
Q Consensus 119 v~plV~~vl~G---~N~TIfAYGqTGSGKTyT 147 (1051)
.-|-+|.+|.| ...+++.+|++|||||..
T Consensus 8 Gi~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 8 GIPGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred CchhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 44567888876 478899999999999753
No 437
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=40.50 E-value=5.3e+02 Score=28.22 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001572 414 YLEIERMKEDVRAARDKNGVYVPHERYAQEEAEKKARIEKIEQLENDLNLSEKEVDRFRELYLT 477 (1051)
Q Consensus 414 ~~EI~~Lk~eL~~~r~~~g~~~~~e~~~~~e~e~~~~~~~i~~le~~l~~~~~el~~l~~~~~~ 477 (1051)
..||.-||.+|..+... ...--.|...+...+......+...+.++..++..+..
T Consensus 9 ~GEIsLLKqQLke~q~E---------~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~ 63 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAE---------VNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRT 63 (202)
T ss_pred hhhHHHHHHHHHHHHHH---------HHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35777788777654321 11222233344445555555555555555555554433
No 438
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=40.16 E-value=3.8e+02 Score=30.08 Aligned_cols=86 Identities=16% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhHHH----------------------
Q 001572 410 LKDLYLEIERMKEDVRAARDKNGVYVPHERYAQEEAEKKARIEKIEQLENDLNLSEKE---------------------- 467 (1051)
Q Consensus 410 ik~l~~EI~~Lk~eL~~~r~~~g~~~~~e~~~~~e~e~~~~~~~i~~le~~l~~~~~e---------------------- 467 (1051)
+.+++.++..+..++...+ +-|++||.+|...+..
T Consensus 1 l~~lq~~l~~l~~~~~~~~-----------------------~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 57 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQK-----------------------ELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIP 57 (248)
T ss_pred CHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhcccccccCCCCcccccccchhhcc
Q ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001572 468 -----------------------VDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLK 518 (1051)
Q Consensus 468 -----------------------l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~ 518 (1051)
+--+..+-+...+.+.+|++++.+.+.++..++.++..|+.+.-++.+.++
T Consensus 58 ~~~~~g~~sp~ss~~~~~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 58 NSGRSGSLSPTSSIIGGGGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred CccccCCCCCCccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 439
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=40.15 E-value=15 Score=43.55 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=17.5
Q ss_pred HHhhcCCCceeeeccCCCCCcccee
Q 001572 124 NEVLDGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 124 ~~vl~G~N~TIfAYGqTGSGKTyTM 148 (1051)
..++.|.| |++.++||||||.+.
T Consensus 40 p~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 40 PLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHhCCCc--EEEECCCCchHHHHH
Confidence 45678887 566779999999753
No 440
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=40.08 E-value=6.1e+02 Score=28.86 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHH
Q 001572 533 SIIEQAKELRNELQNASEDITSLFSKLDQKDRMEAENQS 571 (1051)
Q Consensus 533 ~l~~~~~~L~~~l~~~~~d~~~l~~kl~rk~~~~~~n~~ 571 (1051)
.+..+...++..|++...|...|-+||+|++.-...|+.
T Consensus 116 ~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rk 154 (338)
T KOG3647|consen 116 AIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRK 154 (338)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777888888899999999999987655444443
No 441
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=40.01 E-value=11 Score=39.97 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=14.6
Q ss_pred CCceeeeccCCCCCccceec
Q 001572 130 FNCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 130 ~N~TIfAYGqTGSGKTyTM~ 149 (1051)
.-..+|..|+.|||||+.+.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHH
Confidence 34568889999999988763
No 442
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=39.98 E-value=5.9e+02 Score=28.69 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=6.4
Q ss_pred HHHHHHHHhHHHHHHHH
Q 001572 683 EVIEDIKNSLSQQKELL 699 (1051)
Q Consensus 683 ~~~~~~~~~~~~~~~~~ 699 (1051)
.|+-|+....-+...+|
T Consensus 251 nivgDllRkvgaleskl 267 (333)
T KOG1853|consen 251 NIVGDLLRKVGALESKL 267 (333)
T ss_pred HHHHHHHHHhhhhHHHH
Confidence 33344443333333333
No 443
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=39.97 E-value=14 Score=39.07 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=18.9
Q ss_pred HHhhcCC---CceeeeccCCCCCcccee
Q 001572 124 NEVLDGF---NCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 124 ~~vl~G~---N~TIfAYGqTGSGKTyTM 148 (1051)
|.+|.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4555553 567889999999998764
No 444
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=39.62 E-value=18 Score=43.07 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=23.6
Q ss_pred hhhhhhhhhhHHHHhhcC----CCceeeeccCCCCCcccee
Q 001572 112 RSIYDQAIVPIVNEVLDG----FNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 112 ~~Vy~~~v~plV~~vl~G----~N~TIfAYGqTGSGKTyTM 148 (1051)
...|.....-++.++.+- ...-|.-.||||-|||.|+
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL 220 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
Confidence 344444444444444443 2556667899999999999
No 445
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=39.60 E-value=6.8e+02 Score=29.30 Aligned_cols=19 Identities=5% Similarity=0.015 Sum_probs=8.0
Q ss_pred HHHHhhhhHHHHHHHHHHH
Q 001572 610 QSFLASKCDATHILESRIK 628 (1051)
Q Consensus 610 ~~~~~~~~~~~~~~~~~i~ 628 (1051)
+.|.........+|..=+.
T Consensus 136 ~~~y~~~d~~q~dw~~G~~ 154 (332)
T TIGR01541 136 HAYYAAEDALQGDWLAGAR 154 (332)
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 3344444444444444333
No 446
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=39.09 E-value=17 Score=39.13 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=23.6
Q ss_pred hhhHHHHhhcC---CCceeeeccCCCCCcccee
Q 001572 119 IVPIVNEVLDG---FNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 119 v~plV~~vl~G---~N~TIfAYGqTGSGKTyTM 148 (1051)
.-|-+|.+|.| ....+.-||++|||||..+
T Consensus 4 G~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 4 GSKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred CchhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 45667888875 3567789999999999766
No 447
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=39.06 E-value=7.6e+02 Score=32.28 Aligned_cols=12 Identities=17% Similarity=0.481 Sum_probs=6.0
Q ss_pred ccCCCCCcccee
Q 001572 137 YGQTGTGKTYTM 148 (1051)
Q Consensus 137 YGqTGSGKTyTM 148 (1051)
.+++.||.|+-+
T Consensus 208 ~~~S~sg~t~~~ 219 (771)
T TIGR01069 208 HDTSSSGETFYI 219 (771)
T ss_pred EEEeCCCCEEEE
Confidence 344555555444
No 448
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=38.73 E-value=5e+02 Score=27.47 Aligned_cols=181 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001572 595 VSQQQQQLRCMEEHAQSFLASKCDATHILESRIKRMSETYTAGLELLKELDNSMQKKASSDMEQISSKVSSQTMAVEQFL 674 (1051)
Q Consensus 595 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 674 (1051)
+.+...+.+.+...++.+.+........+..-+..-..+-+..-..++.............+..+...+...+..+.+++
T Consensus 5 ~~el~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~LkGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l~~~~~~~ 84 (204)
T PF04740_consen 5 VSELHSQAESTNSSLKELKEQLESLQKAINQFISSESSLKGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEALKFIKDFQ 84 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHhH-----HHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001572 675 VTMVSEG-----KEVIE-DIKNSLSQQKELLALSAQQQEEGLQRSWISSQEISKATMDFFNDIHRQASKLKTILEESQTE 748 (1051)
Q Consensus 675 ~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 748 (1051)
..+.... .++++ ++...+....+.+..............-+...--.--+..|.+.+..-...|.+.++
T Consensus 85 ~~vd~~~~a~i~e~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~le----- 159 (204)
T PF04740_consen 85 SEVDSSSNAIIDEDFLESELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLE----- 159 (204)
T ss_pred HHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001572 749 KSKELDNFKKTFKEEAAKEEKDALEKIAVILANLTS 784 (1051)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~~~~ 784 (1051)
+|..|...-. ..-.+-..+++.|...|+....
T Consensus 160 ---kL~~fd~~~~-~~~~~~~~~~~~l~~~l~~l~~ 191 (204)
T PF04740_consen 160 ---KLRAFDQQSS-SIFSEIEELLQALQSGLSQLQS 191 (204)
T ss_pred ---HHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHH
No 449
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=38.58 E-value=7.7e+02 Score=29.61 Aligned_cols=320 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhHH--HHHHH
Q 001572 454 IEQLENDLNLSEK-EVDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKH-----MIALSTLKKK--EFIIS 525 (1051)
Q Consensus 454 i~~le~~l~~~~~-el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~-----~~~~~~l~e~--~~~~~ 525 (1051)
+.-+..++....+ -...+...+..-+.....+...|.....+|..+-..|..+.... ..-...|... +.-++
T Consensus 46 ~~~l~~Q~~~L~~~~~~~~~~~~~~~~~~f~~l~~~ld~~~~~L~~~l~~Lr~t~v~~~~~~~~~~~ktL~DFVd~~~v~ 125 (412)
T PF04108_consen 46 RRGLKQQLKLLYKKVRSSLLIVYEWGQRDFKDLVKELDPADARLEQTLDMLRNTKVPPFFRPPGEEPKTLYDFVDEDSVE 125 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCccccCCCCCCCcHHHhcCHHHHH
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHH------------------HHHHHHHHHHHHH
Q 001572 526 KLLCSEKSIIEQAKELRNELQNASEDITSLFSKLDQKDRMEAENQSLVL------------------SFGSQLDQSLKGL 587 (1051)
Q Consensus 526 ~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl~rk~~~~~~n~~~~~------------------~f~~~l~~~l~~~ 587 (1051)
.++..-+.....+..++..++...........++...- +...-+.+.. .+-..+-..+..+
T Consensus 126 ~L~~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~l~~l 204 (412)
T PF04108_consen 126 ILRENLKISIDELQAIQEQLDNSLLQFDNDLRKLKKQL-INKRLKDYELLAPFQSSLGSSPSSSSSNPLMSTILKELHSL 204 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-hhhhhhhhhhccccccccCCCCCcccccccHHHHHHHHHHH
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 001572 588 HKTILGSVSQQQQQLRCMEEHAQSF--LASKCDATHILESRIKRMSETYTAGLELLKELDNSMQKKASSDMEQISSKVSS 665 (1051)
Q Consensus 588 ~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1051)
+..++...+.+.++.+.......-+ -+.-.....++-.-+..=...+.+.+.+|.+....+.......-+-+. ....
T Consensus 205 e~ema~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~-~~~~ 283 (412)
T PF04108_consen 205 EQEMASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQ-SQRD 283 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 666 QTMAVEQFLVTMVSEGKEVIEDIKNSLSQQKELLALSAQQQEEGLQRSWISSQEISKATMDFFNDIHRQASKLKTILEES 745 (1051)
Q Consensus 666 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 745 (1051)
+...+-..+..+......+-..+..++... ..+.......++.+..-++.....-..-..|-..+.. =|.++....
T Consensus 284 ~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~-~~~~~~~~~~~~~i~~~~~~l~~L~~~Y~~F~~aY~~---LL~Ev~RRr 359 (412)
T PF04108_consen 284 HIRELYNALSEALEELRKFGERLPSYLAAF-HDFEERWEEEKESIQAYIDELEQLCEFYEGFLSAYDS---LLLEVERRR 359 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhHHH
Q 001572 746 QTEKSKELDNFKKTFKEEAAKEEKDALEKIAVILANLTSRKTAMVSK 792 (1051)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~ 792 (1051)
+|++..++--+.+-+++..|...=..++......
T Consensus 360 -------------~~~~k~~~i~~~~~eeL~~l~eeE~~~Re~F~~e 393 (412)
T PF04108_consen 360 -------------AVRDKMKKIIREANEELDKLREEEQRRREAFLKE 393 (412)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 450
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=38.44 E-value=19 Score=38.99 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=23.6
Q ss_pred hhhhHHHHhhcCC---CceeeeccCCCCCcccee
Q 001572 118 AIVPIVNEVLDGF---NCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 118 ~v~plV~~vl~G~---N~TIfAYGqTGSGKTyTM 148 (1051)
+.-|-+|.++.|- ..+++.+|.+|||||+-.
T Consensus 9 tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 9 TGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred cCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 3556678888643 678888999999997654
No 451
>PRK01156 chromosome segregation protein; Provisional
Probab=38.33 E-value=1.1e+03 Score=31.16 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=12.8
Q ss_pred eeeeccCCCCCcccee
Q 001572 133 TVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 133 TIfAYGqTGSGKTyTM 148 (1051)
..+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4457899999998764
No 452
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=38.31 E-value=18 Score=43.51 Aligned_cols=24 Identities=46% Similarity=0.656 Sum_probs=18.6
Q ss_pred HHHhhcCCCceeeeccCCCCCcccee
Q 001572 123 VNEVLDGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 123 V~~vl~G~N~TIfAYGqTGSGKTyTM 148 (1051)
+..+++|.| +++.++||||||.+.
T Consensus 32 i~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 32 IPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 345668887 677889999999863
No 453
>PF05729 NACHT: NACHT domain
Probab=38.29 E-value=13 Score=37.04 Aligned_cols=17 Identities=24% Similarity=0.599 Sum_probs=14.5
Q ss_pred eeeeccCCCCCccceec
Q 001572 133 TVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 133 TIfAYGqTGSGKTyTM~ 149 (1051)
.++-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 46789999999998773
No 454
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=38.28 E-value=4.9e+02 Score=28.74 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=23.6
Q ss_pred cCCCCchh-hhhhhccCCCcceeEEeecCCCCCChHhhHHHHHHHHHhhhcccc
Q 001572 345 PYRDSKLT-RLLRDSLGGKTKTCIIATISPSAHSLEETMSTLDYAYRAKNIKNK 397 (1051)
Q Consensus 345 PYRdSKLT-rLLqdSLGGnskT~mIatISPs~~~~eETLsTL~fA~RAk~Iknk 397 (1051)
|+|-.+++ ..+...+++..++.+.+++. +=-|-|..-+++|.+.
T Consensus 25 ~r~~~~~~~~~~~~~~~~~~~~~i~~~~~---------villlfiDsvr~i~~~ 69 (216)
T KOG1962|consen 25 PRRRRKIFKDRLKSGLAPQVLKTIATTMI---------VILLLFIDSVRRIQKY 69 (216)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHH---------HHHHHHHHHHHHHHHh
Confidence 33334443 34455566666666655543 2345667777776644
No 455
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=38.27 E-value=16 Score=46.40 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=26.0
Q ss_pred hhhhhhhhhhHHHHhhcCCCceeeeccCCCCCcccee
Q 001572 112 RSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 112 ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM 148 (1051)
-.||.-+-.-.-.-...|.|-||+..|.+|||||+++
T Consensus 66 PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 66 PHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred Cccchhhhcccccccccccccceeeccccccccccch
Confidence 3466543222222234689999999999999999986
No 456
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=37.78 E-value=3e+02 Score=33.90 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001572 409 LLKDLYLEIERMKEDVRAAR 428 (1051)
Q Consensus 409 lik~l~~EI~~Lk~eL~~~r 428 (1051)
-+.++..+|++|+.++...+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~ 91 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLE 91 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777776554
No 457
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=37.76 E-value=12 Score=36.86 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=13.3
Q ss_pred eeeccCCCCCccceec
Q 001572 134 VFAYGQTGTGKTYTME 149 (1051)
Q Consensus 134 IfAYGqTGSGKTyTM~ 149 (1051)
++-||++|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4579999999999764
No 458
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=37.55 E-value=1.4e+02 Score=26.67 Aligned_cols=45 Identities=27% Similarity=0.418 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 452 EKIEQLENDLNLSEKEVDRFRELYLTEQEQKLDLESELKECKINL 496 (1051)
Q Consensus 452 ~~i~~le~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l 496 (1051)
++|..|+..+.-.+.-+..|-+....++.++..|+..+..+..+|
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555444444444444444443333
No 459
>COG5280 Phage-related minor tail protein [Function unknown]
Probab=37.46 E-value=9.7e+02 Score=30.46 Aligned_cols=190 Identities=11% Similarity=0.099 Sum_probs=81.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 001572 590 TILGSVSQQQQQLRCMEEHAQSFLA----SKCDATHILESRIKRMSETYTAGLELLKELDNSMQKKASSDMEQISSKVSS 665 (1051)
Q Consensus 590 ~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1051)
.+.+..-.++++-+.....-..|.. ...+.++.++.++..+-..++..-..+.......-...-+.-+.+...+.+
T Consensus 118 el~~~~vs~r~~~~~~~d~~~~~vt~g~~siaevfe~~~~r~taa~gilm~~~g~~~~v~~~~i~~gf~~g~~fs~d~d~ 197 (634)
T COG5280 118 ELNEPTVSVREHGKGLKDEELRFVTGGDSSIAEVFESIKDRVTAALGILMKAAGLKGGVATDVIAGGFQAGSAFSGDVDD 197 (634)
T ss_pred HhccceeeHHHHhhhhhhhhhhccccccchhhHHHHHhhHHHHHHHHHHHhhccccccchhhHHhhhhccccchhhhHHH
Confidence 3334444444454444444444443 334556666666666555444443333322222222211111111111112
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HH
Q 001572 666 QTMAVEQFLVTMVSEGKEVIEDIKN-------SLSQQKELLALSAQQQEEGLQRSWISSQEISKATMDFFNDIH----RQ 734 (1051)
Q Consensus 666 ~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 734 (1051)
-...+...+...+.+++.+++.+.. +.+..-..|..|-+|........+++.... ...|-+.+. +-
T Consensus 198 ~l~~~~~~fg~~g~e~kk~~d~i~~~~~~~~~s~E~Vg~Al~e~~~q~~d~s~~~lEs~te~---al~~s~i~~aD~~~~ 274 (634)
T COG5280 198 TLDEYGPQFGKNGKEAKKLFDTIIDGAQKGADSREKVGDALKEFNQQLQDASGAALESLTES---ALKFSKIMAADGNEA 274 (634)
T ss_pred HHHhhcchhcccchhHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhcccchhhHHHHHHH---HHHHHHHhccchHHH
Confidence 1222222223344455555555544 334444445555555543334444333222 222222222 11
Q ss_pred HHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001572 735 ASKLKTILEESQ--TEKSKELDNFKKTFKEEAAKEEKDALEKIAVILANL 782 (1051)
Q Consensus 735 ~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~~ 782 (1051)
.......++--- ....++..++.-++-+..-.-...|.+.+++.-..-
T Consensus 275 ~~~~~~a~e~~gls~~e~q~v~D~va~~aq~~g~~~d~L~ds~a~y~~~~ 324 (634)
T COG5280 275 KRAASAAMEALGLSADESQQVLDLVAYVAQNAGDAVDDLADSLAEYSSTF 324 (634)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHHHHHccchHHHHHHHHHhcchhh
Confidence 111112222211 124555677777777777777777777776665443
No 460
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=37.42 E-value=6.4e+02 Score=28.32 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 001572 484 DLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEFIISKLLC 529 (1051)
Q Consensus 484 ~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~~~~ 529 (1051)
+|+.+|++++++-.+..-...=|++++.-.-.+..++..+|..+.+
T Consensus 55 ~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~llq 100 (277)
T PF15030_consen 55 ELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHLLQ 100 (277)
T ss_pred HHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566665555555555555666666666667777777666644
No 461
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=37.22 E-value=57 Score=38.82 Aligned_cols=45 Identities=29% Similarity=0.587 Sum_probs=28.4
Q ss_pred cCcccCCCcchhhhhhhhhhhH-HHHhhcCCCc---eeeeccCCCCCcc
Q 001572 101 FDKVFGPKAQQRSIYDQAIVPI-VNEVLDGFNC---TVFAYGQTGTGKT 145 (1051)
Q Consensus 101 FD~VF~~~asQ~~Vy~~~v~pl-V~~vl~G~N~---TIfAYGqTGSGKT 145 (1051)
.|-|-|-..--.-+-+.+|-|+ +-.+|.|.-- .|+.+|+.|||||
T Consensus 211 W~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKT 259 (491)
T KOG0738|consen 211 WDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKT 259 (491)
T ss_pred hHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHH
Confidence 3444443333333445567775 4667777653 5889999999996
No 462
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.09 E-value=38 Score=43.24 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=17.9
Q ss_pred CCCCCcchhHHHHHHHHHHhhc
Q 001572 159 LPAEAGVIPRAVRQIFDTLEAQ 180 (1051)
Q Consensus 159 ~~~~~GIIpRal~~LF~~le~~ 180 (1051)
..+.-|++-|++.+|...+..-
T Consensus 783 sGDSGGVMDRVVSQLLAELDgl 804 (953)
T KOG0736|consen 783 SGDSGGVMDRVVSQLLAELDGL 804 (953)
T ss_pred CCCccccHHHHHHHHHHHhhcc
Confidence 3456799999999999988653
No 463
>PRK02119 hypothetical protein; Provisional
Probab=37.00 E-value=2e+02 Score=26.18 Aligned_cols=42 Identities=14% Similarity=0.247 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 451 IEKIEQLENDLNLSEKEVDRFRELYLTEQEQKLDLESELKEC 492 (1051)
Q Consensus 451 ~~~i~~le~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~ 492 (1051)
.++|..|+..+.-.+.-+..|-+....+++.+..++.++..+
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555554444444444444444333
No 464
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=36.95 E-value=3.7e+02 Score=25.47 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001572 621 HILESRIKRMSETYTAG 637 (1051)
Q Consensus 621 ~~~~~~i~~~~~~~~~~ 637 (1051)
..|..+....+..+...
T Consensus 31 ~~l~~~~~~~~~~I~~~ 47 (127)
T smart00502 31 QEVEENAADVEAQIKAA 47 (127)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 465
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=36.80 E-value=14 Score=45.68 Aligned_cols=18 Identities=39% Similarity=0.460 Sum_probs=15.0
Q ss_pred ceeeeccCCCCCccceec
Q 001572 132 CTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 132 ~TIfAYGqTGSGKTyTM~ 149 (1051)
-..+-.|+.|||||||+.
T Consensus 202 ~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred CceEeeCCCCCCceeeHH
Confidence 345678999999999985
No 466
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=36.77 E-value=24 Score=39.32 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=18.5
Q ss_pred hhhHHHHhhcCCCceeeeccCCCCCcccee
Q 001572 119 IVPIVNEVLDGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 119 v~plV~~vl~G~N~TIfAYGqTGSGKTyTM 148 (1051)
...++..+..|.+ |+-+|++|||||...
T Consensus 11 ~~~~l~~l~~g~~--vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 11 TSRALRYLKSGYP--VHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 3344444555654 456899999998755
No 467
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=36.58 E-value=12 Score=42.92 Aligned_cols=42 Identities=19% Similarity=0.402 Sum_probs=25.6
Q ss_pred eeeccCCCCCccceecc----CCCCCCCC----CCCCCcchhHHHHHHHH
Q 001572 134 VFAYGQTGTGKTYTMEG----GMRNKGGD----LPAEAGVIPRAVRQIFD 175 (1051)
Q Consensus 134 IfAYGqTGSGKTyTM~G----~~~~~~~~----~~~~~GIIpRal~~LF~ 175 (1051)
...||+|||||++.+-- ..-.+..+ ..++.|.||-.=...++
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~ 139 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWE 139 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHH
Confidence 45799999999998752 11111111 13567888876555554
No 468
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=36.56 E-value=10 Score=42.92 Aligned_cols=21 Identities=38% Similarity=0.748 Sum_probs=18.1
Q ss_pred cCCCceeeeccCCCCCcccee
Q 001572 128 DGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 128 ~G~N~TIfAYGqTGSGKTyTM 148 (1051)
.|++-+|+..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 488999999999999998643
No 469
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=36.47 E-value=14 Score=44.59 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=21.7
Q ss_pred cCCCceeeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHH
Q 001572 128 DGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAV 170 (1051)
Q Consensus 128 ~G~N~TIfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal 170 (1051)
.|... +|.||+.|||||++.. --+||+|-..
T Consensus 196 AGgHn-Ll~~GpPGtGKTmla~-----------Rl~~lLPpls 226 (490)
T COG0606 196 AGGHN-LLLVGPPGTGKTMLAS-----------RLPGLLPPLS 226 (490)
T ss_pred hcCCc-EEEecCCCCchHHhhh-----------hhcccCCCCC
Confidence 34433 6789999999988773 2467877654
No 470
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=36.41 E-value=45 Score=37.32 Aligned_cols=50 Identities=24% Similarity=0.539 Sum_probs=35.1
Q ss_pred HHhhcCCCce-eeeccCCCCCccceeccCCCCCCCCCCCCCcchhHHHHHHHHHHhhcccCcccEEEEEEEEccccccc
Q 001572 124 NEVLDGFNCT-VFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDTLEAQNADYSMKVSFLELYNEDITDL 201 (1051)
Q Consensus 124 ~~vl~G~N~T-IfAYGqTGSGKTyTM~G~~~~~~~~~~~~~GIIpRal~~LF~~le~~~~~~sV~vS~lEIYnE~v~DL 201 (1051)
..++.|+-+- |+-||..||||+.. +..+|......+- ..+||-.++|.+|
T Consensus 77 ~~F~~G~pANnVLLwGaRGtGKSSL----------------------VKA~~~e~~~~gl------rLVEV~k~dl~~L 127 (287)
T COG2607 77 EQFAEGLPANNVLLWGARGTGKSSL----------------------VKALLNEYADEGL------RLVEVDKEDLATL 127 (287)
T ss_pred HHHHcCCcccceEEecCCCCChHHH----------------------HHHHHHHHHhcCC------eEEEEcHHHHhhH
Confidence 4677898764 88999999999643 3445555544442 2789988886665
No 471
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=36.37 E-value=17 Score=40.95 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=15.7
Q ss_pred CceeeeccCCCCCccceec
Q 001572 131 NCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 131 N~TIfAYGqTGSGKTyTM~ 149 (1051)
+--++-+|++|||||-++.
T Consensus 33 ~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp TEEEEEESSTTSSHHHHHH
T ss_pred CCcEEEECCCCCchhHHHH
Confidence 5567889999999998774
No 472
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=36.36 E-value=22 Score=38.21 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=24.1
Q ss_pred hhhhHHHHhhcCC---CceeeeccCCCCCccceec
Q 001572 118 AIVPIVNEVLDGF---NCTVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 118 ~v~plV~~vl~G~---N~TIfAYGqTGSGKTyTM~ 149 (1051)
+.-|-+|.+|.|- ...+.-||.+|||||....
T Consensus 7 tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 7 TGCKMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred CCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3556688888643 4577899999999987653
No 473
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=36.35 E-value=9.9e+02 Score=31.31 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=6.8
Q ss_pred ccCCCCCcccee
Q 001572 137 YGQTGTGKTYTM 148 (1051)
Q Consensus 137 YGqTGSGKTyTM 148 (1051)
.+++.||.|+-+
T Consensus 213 ~~~s~sg~t~y~ 224 (782)
T PRK00409 213 HDQSSSGATLYI 224 (782)
T ss_pred eeEECCCCEEEE
Confidence 455666665554
No 474
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=36.20 E-value=6.2e+02 Score=27.83 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 001572 409 LLKDLYLEIERMKEDVRAARDK 430 (1051)
Q Consensus 409 lik~l~~EI~~Lk~eL~~~r~~ 430 (1051)
.+..+-.++..++.+|......
T Consensus 46 ~i~~aP~~~~~l~~~l~~l~~~ 67 (240)
T PF12795_consen 46 QIDQAPKEIRELQKELEALKSQ 67 (240)
T ss_pred HHHHhHHHHHHHHHHHHhhhcc
Confidence 4555566677777777666443
No 475
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=36.19 E-value=9.6e+02 Score=30.02 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 001572 737 KLKTILEESQTEKSKELDNFKKTFKEEAAK--EEKDALEKIAVI 778 (1051)
Q Consensus 737 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~l 778 (1051)
...+++++-+....+.+++=.++|++..++ |.++.+-=|+.+
T Consensus 277 ~~~el~~klsea~~kd~ekKA~Eyee~vrKAEE~qK~mgCvgKI 320 (593)
T PRK15374 277 NDLALFNALQEGRQAEMEKKSAEFQEETRKAEETNRIMGCIGKV 320 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 444566665555666666666667666543 344444433333
No 476
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=36.13 E-value=15 Score=42.28 Aligned_cols=46 Identities=26% Similarity=0.338 Sum_probs=27.7
Q ss_pred ceeeeccCCCCCccceeccC-------CCCCCCCCCCCCcchhHHHHHHHHHH
Q 001572 132 CTVFAYGQTGTGKTYTMEGG-------MRNKGGDLPAEAGVIPRAVRQIFDTL 177 (1051)
Q Consensus 132 ~TIfAYGqTGSGKTyTM~G~-------~~~~~~~~~~~~GIIpRal~~LF~~l 177 (1051)
+-|+..|+||||||+.-.-- +.-.....-.++|.+---++.|..++
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkL 150 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKL 150 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHH
Confidence 46888999999999743220 00001112356788777777766554
No 477
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=36.03 E-value=15 Score=46.93 Aligned_cols=51 Identities=27% Similarity=0.477 Sum_probs=29.2
Q ss_pred eEecCcccCCCcchhhhhhhhhhhHHH-HhhcCC----CceeeeccCCCCCcccee
Q 001572 98 VFTFDKVFGPKAQQRSIYDQAIVPIVN-EVLDGF----NCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 98 ~F~FD~VF~~~asQ~~Vy~~~v~plV~-~vl~G~----N~TIfAYGqTGSGKTyTM 148 (1051)
.++||.|-+.+..-..+.+.+..|+-. .++..+ .-.|+-||++|||||+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 467777766554444444433333221 122222 245889999999999766
No 478
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=36.03 E-value=21 Score=45.37 Aligned_cols=32 Identities=28% Similarity=0.248 Sum_probs=21.5
Q ss_pred hhhhHHHHhhc-----CCCceeeeccCCCCCccceecc
Q 001572 118 AIVPIVNEVLD-----GFNCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 118 ~v~plV~~vl~-----G~N~TIfAYGqTGSGKTyTM~G 150 (1051)
++..+++.+.. |.+..++. -+||||||+||..
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~~ 282 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHHH
Confidence 35566666665 34444433 4999999999964
No 479
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=35.84 E-value=4e+02 Score=25.46 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001572 437 HERYAQEEAEKKARIEKIEQLENDLNLSEKEV 468 (1051)
Q Consensus 437 ~e~~~~~e~e~~~~~~~i~~le~~l~~~~~el 468 (1051)
.+.+...-.+.+....+++.+..+.+...+++
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I 59 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEI 59 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33333333344444444444444443333333
No 480
>PF13173 AAA_14: AAA domain
Probab=35.82 E-value=15 Score=36.09 Aligned_cols=17 Identities=29% Similarity=0.517 Sum_probs=14.7
Q ss_pred eeeeccCCCCCccceec
Q 001572 133 TVFAYGQTGTGKTYTME 149 (1051)
Q Consensus 133 TIfAYGqTGSGKTyTM~ 149 (1051)
.++-+|+.|+|||+.|.
T Consensus 4 ~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLK 20 (128)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57789999999999873
No 481
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=35.74 E-value=14 Score=40.41 Aligned_cols=20 Identities=40% Similarity=0.575 Sum_probs=16.9
Q ss_pred CceeeeccCCCCCccceecc
Q 001572 131 NCTVFAYGQTGTGKTYTMEG 150 (1051)
Q Consensus 131 N~TIfAYGqTGSGKTyTM~G 150 (1051)
...++-||..|+|||++.-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 35589999999999998854
No 482
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=35.72 E-value=8.4e+02 Score=29.20 Aligned_cols=13 Identities=8% Similarity=0.263 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 001572 665 SQTMAVEQFLVTM 677 (1051)
Q Consensus 665 ~~~~~~~~~l~~~ 677 (1051)
.....+|.|+.+-
T Consensus 273 qeva~le~yyQ~y 285 (499)
T COG4372 273 QEVAQLEAYYQAY 285 (499)
T ss_pred HHHHHHHHHHHHH
Confidence 3334455555443
No 483
>PRK11519 tyrosine kinase; Provisional
Probab=35.67 E-value=1.1e+03 Score=30.47 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 615 SKCDATHILESRIKRMSETYTAGLELLKELD 645 (1051)
Q Consensus 615 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 645 (1051)
.......+++....-.++.|...++...+..
T Consensus 367 ~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 367 KTQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556677777777777777776666543
No 484
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=35.32 E-value=21 Score=38.42 Aligned_cols=28 Identities=36% Similarity=0.595 Sum_probs=21.9
Q ss_pred hhHHHHhhcC---CCceeeeccCCCCCccce
Q 001572 120 VPIVNEVLDG---FNCTVFAYGQTGTGKTYT 147 (1051)
Q Consensus 120 ~plV~~vl~G---~N~TIfAYGqTGSGKTyT 147 (1051)
-|-+|.++.| .+.+++.+|++|||||..
T Consensus 5 I~~LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 5 IPGLDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp STTHHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 4556788844 478899999999999754
No 485
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=35.32 E-value=24 Score=45.58 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=19.7
Q ss_pred HHHhhcCCCceeeeccCCCCCcccee
Q 001572 123 VNEVLDGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 123 V~~vl~G~N~TIfAYGqTGSGKTyTM 148 (1051)
+..+.+|.|+.|.| +||||||-+-
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHHH
Confidence 34567999999987 9999998754
No 486
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=35.12 E-value=7.8e+02 Score=28.63 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH
Q 001572 670 VEQFLVTMVSEGKEVIEDIKNSLSQQKELLALS 702 (1051)
Q Consensus 670 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1051)
++.++..--..++...+.|...+..|...+..+
T Consensus 235 ~e~lf~~eL~k~~~~~~~l~~~~~~Q~~ll~~i 267 (337)
T cd09234 235 MEDLFKEELKKHDQLVNLIEQNLAAQENILKAL 267 (337)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 455555544556666666666666666655554
No 487
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=35.01 E-value=20 Score=45.88 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=0.0
Q ss_pred cCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCcccee
Q 001572 105 FGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 105 F~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM 148 (1051)
|+.-..|..+-.. ...+..-+-.|--..++-||++|+|||++.
T Consensus 27 ldd~vGQe~ii~~-~~~L~~~i~~~~~~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 27 LEEFVGQDHILGE-GRLLRRAIKADRVGSLILYGPPGVGKTTLA 69 (725)
T ss_pred HHHhcCcHHHhhh-hHHHHHHHhcCCCceEEEECCCCCCHHHHH
No 488
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.89 E-value=1.1e+03 Score=30.32 Aligned_cols=498 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred ccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001572 395 KNKPEANQKMSKAVLLKDLYLEIERMKEDVRAARDKNGVYVPHERYAQEEAEKKARIEKIEQLENDLNLSEKEVDRFREL 474 (1051)
Q Consensus 395 knkp~vN~~~~k~~lik~l~~EI~~Lk~eL~~~r~~~g~~~~~e~~~~~e~e~~~~~~~i~~le~~l~~~~~el~~l~~~ 474 (1051)
.+.|.--.-.....++-.+..++..|+......+ ....++........+...+.+.+.+..++..
T Consensus 49 ~~~~~~s~n~~~~s~~~~~~~~l~~Lqns~kr~e---------------l~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~ 113 (716)
T KOG4593|consen 49 MQSEERSENITSKSLLMQLEDELMQLQNSHKRAE---------------LELTKAQSILARNYEAEVDRKHKLLTRLRQL 113 (716)
T ss_pred CCchhhhccchhHHHHHHHHHHHHHHhhHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 001572 475 YLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEFIISKLLCSEKSIIEQAKELRNELQNASEDITS 554 (1051)
Q Consensus 475 ~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~ 554 (1051)
+.........+++++.......++..+...++..+.... +.+-..++.++..+-..+...+-.....+......+..
T Consensus 114 q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k---~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~ 190 (716)
T KOG4593|consen 114 QEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDK---LAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQN 190 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHH--
Q 001572 555 LFSKLD-QKDRMEAENQSLVLSFGSQLDQSLKGLHKTILGSVSQQQQQLRCMEEHAQSFLASKCD---ATHILESRIK-- 628 (1051)
Q Consensus 555 l~~kl~-rk~~~~~~n~~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~i~-- 628 (1051)
+...++ .-..+..+|..++..-.....-.-...+..-....-....++..+...+++-+..... +..+|...++
T Consensus 191 ~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~ 270 (716)
T KOG4593|consen 191 EEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATL 270 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHhH------------------HHHHHH
Q 001572 629 -RMSETYTAGLELLKELDNSMQKK--ASSDMEQISSKVSSQTMAVEQFLVTMVSEG------------------KEVIED 687 (1051)
Q Consensus 629 -~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------~~~~~~ 687 (1051)
+....+.-..+++..+..++... -.+....++-.......-+...=......+ ..-+.+
T Consensus 271 re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~~~~~~~~~~~~~~e~s~~~~l~~ 350 (716)
T KOG4593|consen 271 RENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMGSLRTPEDLMEKLVNEQSRNANLKN 350 (716)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhhhcc
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 001572 688 IKNSLSQQKELLALSAQQQEEGLQRSWISSQEISKATMDFFNDIHRQASKLKTILEESQTEKSKELDNFKKTFKEEAAKE 767 (1051)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1051)
..+.+.........+.+.+.+.....+..+..-+ ....|.+.+..- ...-+..
T Consensus 351 ~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~t------------klk~l~etl~~~---------------~~~~~~~ 403 (716)
T KOG4593|consen 351 KNSTVTSPARGLERARQLLKEELKQVAGITEEET------------KLKELHETLARR---------------LQKRALL 403 (716)
T ss_pred ccccccCcccchHHHHHHHHHHHHHHHHhhhhhH------------HHHHHHHHHHHH---------------HHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHhHHHhHHH-hHHhhHhhHHHhhHHHHHhhhHHHHHhhHHHHHHHHHHHHhhhhhhhhhhHHHh
Q 001572 768 EKDALEKIAVILANLTSRKTAMVSK-ASSNIQDTNIQQNKRLQNEISSVQQVSTDARKELSKYIQNVESHFMEDTFSAAE 846 (1051)
Q Consensus 768 ~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~ 846 (1051)
..+..+-..+++.+-...+.-.+.- .+...|+...+.-..++.+...|..........+..|....|+--++....-.+
T Consensus 404 ~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~ 483 (716)
T KOG4593|consen 404 LTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQ 483 (716)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhccChHHHHHHHHHHHhhhhHHHHHhhhhhcccchhhhhhhhhhHHH
Q 001572 847 SRAIMENSLQECSKTVDSSRQQWEYAQSYIRNLNTSSTAEIKSAIKENISANQTAHEEFKSACSSMDMDFGAKAGDIVVS 926 (1051)
Q Consensus 847 ~~~~m~~~lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~n~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 926 (1051)
.-.+-+.+++|-...... ......--..+..| ...|..+. ..-..-.+..|++.+..-++..
T Consensus 484 L~~~~q~l~~qr~e~~~~-~e~i~~~~ke~~~L---------------e~En~rLr--~~~e~~~l~gd~~~~~~rVl~~ 545 (716)
T KOG4593|consen 484 LSSREQSLLFQREESELL-REKIEQYLKELELL---------------EEENDRLR--AQLERRLLQGDYEENITRVLHM 545 (716)
T ss_pred HHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH---------------HHHHHHHH--HHHHHHHHhhhhhhhccceeee
Q ss_pred HhHHHhHhhhhhhhhhHHHHHhHhhhHHH
Q 001572 927 VNDLLMRDRESKMEIDSITTICLDQLKFV 955 (1051)
Q Consensus 927 i~~~~~~~~~~~~~~~~~~~~~~~~l~~l 955 (1051)
.++-...++.+.........+-+..|+.+
T Consensus 546 ~~npt~~~~~~~k~~~e~LqaE~~~lk~~ 574 (716)
T KOG4593|consen 546 STNPTSKARQIKKNRLEELQAELERLKER 574 (716)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=34.88 E-value=14 Score=38.03 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=0.0
Q ss_pred CceeeeccCCCCCcccee
Q 001572 131 NCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 131 N~TIfAYGqTGSGKTyTM 148 (1051)
++..+-||++|+|||..|
T Consensus 19 ~g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp SEEEEEEESTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
No 490
>PRK10865 protein disaggregation chaperone; Provisional
Probab=34.83 E-value=26 Score=45.81 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=0.0
Q ss_pred cCcccCCCcchhhhhhhhhhhHHHHhhcCCC------ceeeeccCCCCCccce
Q 001572 101 FDKVFGPKAQQRSIYDQAIVPIVNEVLDGFN------CTVFAYGQTGTGKTYT 147 (1051)
Q Consensus 101 FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N------~TIfAYGqTGSGKTyT 147 (1051)
+.+|+| |...-.. +...|..+..|.. +.++-+|++|+|||++
T Consensus 567 ~~~viG----Q~~ai~~-l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~l 614 (857)
T PRK10865 567 HHRVIG----QNEAVEA-VSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTEL 614 (857)
T ss_pred CCeEeC----CHHHHHH-HHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHH
No 491
>PHA02244 ATPase-like protein
Probab=34.40 E-value=31 Score=40.79 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred ecCcccCCCcchhhhhhhhhhhHHHHhhcCCCceeeeccCCCCCccc
Q 001572 100 TFDKVFGPKAQQRSIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTY 146 (1051)
Q Consensus 100 ~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~N~TIfAYGqTGSGKTy 146 (1051)
.++.+=.+...+...+......+..-+-.|.+..| +|++|+|||+
T Consensus 90 ~l~~~d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL--~GppGtGKTt 134 (383)
T PHA02244 90 DISGIDTTKIASNPTFHYETADIAKIVNANIPVFL--KGGAGSGKNH 134 (383)
T ss_pred chhhCCCcccCCCHHHHHHHHHHHHHHhcCCCEEE--ECCCCCCHHH
No 492
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=34.40 E-value=33 Score=40.34 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=0.0
Q ss_pred cC-cccCCCcchhhhhhhhhhhHHHHhh--cCCCceeeeccCCCCCccc
Q 001572 101 FD-KVFGPKAQQRSIYDQAIVPIVNEVL--DGFNCTVFAYGQTGTGKTY 146 (1051)
Q Consensus 101 FD-~VF~~~asQ~~Vy~~~v~plV~~vl--~G~N~TIfAYGqTGSGKTy 146 (1051)
|| .||| +.+..+..+.-+-.... ..-+-.+.-.|++|||||.
T Consensus 49 F~~~~~G----~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKSt 93 (361)
T smart00763 49 FDHDFFG----MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSS 93 (361)
T ss_pred cchhccC----cHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHH
No 493
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=34.26 E-value=21 Score=45.07 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHhhcCCCceeeeccCCCCCcccee
Q 001572 115 YDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTM 148 (1051)
Q Consensus 115 y~~~v~plV~~vl~G~N~TIfAYGqTGSGKTyTM 148 (1051)
++..-...|..++..-..++ ..|++|||||+|+
T Consensus 158 ln~~Q~~Av~~~l~~~~~~l-I~GpPGTGKT~t~ 190 (637)
T TIGR00376 158 LNESQKEAVSFALSSKDLFL-IHGPPGTGKTRTL 190 (637)
T ss_pred CCHHHHHHHHHHhcCCCeEE-EEcCCCCCHHHHH
No 494
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=34.24 E-value=7e+02 Score=27.85 Aligned_cols=131 Identities=19% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001572 448 KARIEKIEQLENDLNLSEKEVDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEFIISKL 527 (1051)
Q Consensus 448 ~~~~~~i~~le~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~~~~ 527 (1051)
.....+-..|+..|...+.+....+..+.........|..++...+..-..+.....+++.....+.........-...|
T Consensus 1 E~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~L 80 (246)
T PF00769_consen 1 EEAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQL 80 (246)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001572 528 LCSEKSIIEQAKELRNELQNASEDITSLFSKLDQKDRMEAENQSLVLSFGS 578 (1051)
Q Consensus 528 ~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl~rk~~~~~~n~~~~~~f~~ 578 (1051)
...-..+...+..|.........+...|+.++..-..-......-...|..
T Consensus 81 e~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~ 131 (246)
T PF00769_consen 81 EQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVMS 131 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 495
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=34.05 E-value=8.1e+02 Score=28.55 Aligned_cols=250 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 001572 420 MKEDVRAARDKNGVYVPHERYAQEEAEKKARIEKIEQLENDLNLSEKEVDRFRELYLTEQ-------EQKLDLESELKEC 492 (1051)
Q Consensus 420 Lk~eL~~~r~~~g~~~~~e~~~~~e~e~~~~~~~i~~le~~l~~~~~el~~l~~~~~~~~-------~~~~~l~~~l~~~ 492 (1051)
+.......+..+|+.--...+...........+.+.+....|..-..+-..+|..|.. . .....+..++.+.
T Consensus 61 ~~~~~~~v~~~gG~~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~-rWtr~pS~~~~~~l~~~i~~~ 139 (339)
T cd09238 61 LDEEVEAVQISGGLAALEGELPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGT-AWTRPPSATLTKNLWERLNRF 139 (339)
T ss_pred hHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------------------HHHHHhhHHHHHHHHHHHHHHHHhHHHHHH
Q 001572 493 KINLENRSKALLDLQEKHMIALSTLKKKEFI-------------------ISKLLCSEKSIIEQAKELRNELQNASEDIT 553 (1051)
Q Consensus 493 ~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~-------------------~~~~~~~e~~l~~~~~~L~~~l~~~~~d~~ 553 (1051)
..-|+.....-..+..++......+..-..- .......-..+......|........+.+.
T Consensus 140 r~~L~~A~~sD~~v~~k~~~~~~~l~~L~~~~~~~~~Ps~~~~~~~l~~~~~~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk 219 (339)
T cd09238 140 RVNLEQAGDSDESLRRRIEDAMDGMLILDDEPAAAAAPTLRAPMLSTDEDDASIVGTLRSNLEELEALGNERAGIEDMMK 219 (339)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHhhHhhCCCCCCcccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001572 554 SLFSKLDQKDRMEAENQSLVLSFGSQLDQSLKGLHKTILGSVSQQQQQLRCMEEHAQSFLASKCDATHILESRIKRMSET 633 (1051)
Q Consensus 554 ~l~~kl~rk~~~~~~n~~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 633 (1051)
.+...-+=...+.......-.-|..+|.+ .+-+...+...+..|...+..+......|...+.. ..+...-.+.-+.
T Consensus 220 ~~~~~DDI~~~ll~~~~~~e~lF~~eL~k-f~~~~~~v~~~~~~Q~~ll~~i~~~n~~f~~~~~~--~~~~~~re~~l~~ 296 (339)
T cd09238 220 ALKRNDNILAKVMATTGSYDALFKEELKK-YDSVREAVSKNISSQDDLLSRLRALNEKFSQIFDV--EGWRAATESHATQ 296 (339)
T ss_pred HHhhcCCcHHHHHHhhhhhHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001572 634 YTAGLELLKELDNSMQKKASSDMEQISSKVSSQTMAVEQFL 674 (1051)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 674 (1051)
+........++...+.+.. .-..++...+......+++|+
T Consensus 297 L~~ay~~y~el~~~l~eG~-kFY~dL~~~~~~l~~~~~~fv 336 (339)
T cd09238 297 IRAAVAKYRELREGMEEGL-RFYSGFQEAVRRLKQECEDFV 336 (339)
T ss_pred HHHHHHHHHHHHHchHHHH-HHHHHHHHHHHHHHHHHHHHH
No 496
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=34.00 E-value=13 Score=42.60 Aligned_cols=53 Identities=30% Similarity=0.335 Sum_probs=0.0
Q ss_pred CcCeeEecCcccCCCcchhhhhhhhhhhHHHHhhcCC-----CceeeeccCCCCCccc
Q 001572 94 QIDRVFTFDKVFGPKAQQRSIYDQAIVPIVNEVLDGF-----NCTVFAYGQTGTGKTY 146 (1051)
Q Consensus 94 ~~~k~F~FD~VF~~~asQ~~Vy~~~v~plV~~vl~G~-----N~TIfAYGqTGSGKTy 146 (1051)
..++.|+||+|-+-.-.-.++-+.+..|+++..|--- --.+.-||+.|+|||+
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTl 181 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTL 181 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhH
No 497
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=34.00 E-value=1.1e+03 Score=30.24 Aligned_cols=142 Identities=16% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001572 445 AEKKARIEKIEQLENDLNLSEKEVDRFRELYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIALSTLKKKEFII 524 (1051)
Q Consensus 445 ~e~~~~~~~i~~le~~l~~~~~el~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~~~l~e~~~~~ 524 (1051)
.+...+...+..+..+++.....+.+....+...+.+...++..+. .+.........++.........+..-...+
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l 250 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG----NYADLRRNIKPLEGLESTIKKKIQALQQEL 250 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----hhhhHHHhhhhhhhhhhHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001572 525 SKLLCSEKSIIEQAKELRNELQNASEDITSLFSKLDQKDRMEAENQSLVLSFGSQLDQSLKGLHKTI 591 (1051)
Q Consensus 525 ~~~~~~e~~l~~~~~~L~~~l~~~~~d~~~l~~kl~rk~~~~~~n~~~~~~f~~~l~~~l~~~~~~~ 591 (1051)
..+......+...+..+...++.....+..+...|........+-. ....-+..|..++.+++..+
T Consensus 251 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 251 EELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCc
No 498
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=33.93 E-value=8.3e+02 Score=28.58 Aligned_cols=250 Identities=18% Similarity=0.178 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHH
Q 001572 405 SKAVLLKDLYLEIERMKEDVRAARDKNGVYVPHERYAQEEAEKKARIEKIEQLENDLN-----------LSEKEVDRFRE 473 (1051)
Q Consensus 405 ~k~~lik~l~~EI~~Lk~eL~~~r~~~g~~~~~e~~~~~e~e~~~~~~~i~~le~~l~-----------~~~~el~~l~~ 473 (1051)
+|...+.-|..|++..+.| .+.|-.+-+..+.+...++.-...+. ...+.-..+..
T Consensus 6 SK~eAL~IL~~eLe~cq~E-------------rDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~ 72 (319)
T PF09789_consen 6 SKSEALLILSQELEKCQSE-------------RDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQ 72 (319)
T ss_pred hHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhhHHHHHHHHHHhhHHH---HHHHHHHH
Q 001572 474 LYLTEQEQKLDLESELKECKINLENRSKALLDLQEKHMIAL---------STLKKKEFIISKLLCSEKS---IIEQAKEL 541 (1051)
Q Consensus 474 ~~~~~~~~~~~l~~~l~~~~~~l~~~~~~l~~l~~~~~~~~---------~~l~e~~~~~~~~~~~e~~---l~~~~~~L 541 (1051)
.+....+.+..|..++..+...|.+.+..+.-|.+.+.... ...++++.++.++.+.... |......+
T Consensus 73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~ 152 (319)
T PF09789_consen 73 LLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSL 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHHhh------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001572 542 RNELQNASEDITSLFSKLDQ------------------KDRMEAENQSLVLSFGSQLDQSLKGLHKTILGSVSQQQQQLR 603 (1051)
Q Consensus 542 ~~~l~~~~~d~~~l~~kl~r------------------k~~~~~~n~~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~l~ 603 (1051)
..+.++...+-+....|..| -+.+..+|+.+...+ .++....+.++..+..+...... .
T Consensus 153 lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl-~q~qeE~~l~k~~i~KYK~~le~--k 229 (319)
T PF09789_consen 153 LDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERL-KQLQEEKELLKQTINKYKSALER--K 229 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh--h
Q ss_pred HHHHHHHHHHhhhh--------HHHHHHH-------------HHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhhHHHHH
Q 001572 604 CMEEHAQSFLASKC--------DATHILE-------------SRIKRMSETYTAGLELLKE--LDNSMQKKASSDMEQIS 660 (1051)
Q Consensus 604 ~~~~~~~~~~~~~~--------~~~~~~~-------------~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 660 (1051)
.....++...+..+ ++..++- ..|.+++.+....++.+.+ ++-.|+....--+..=-
T Consensus 230 ~~~~~~k~~~~~~~~~~~v~s~kQv~~ll~~~~~~~~~~~~~~s~sdLksl~~aLle~indK~~al~Hqr~tNkILg~rv 309 (319)
T PF09789_consen 230 RKKGIIKLGNSASSNLTGVMSAKQVKELLESESNGCSLPASPQSISDLKSLATALLETINDKNLALQHQRKTNKILGNRV 309 (319)
T ss_pred ccccccccCCCCCCcccccccHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 001572 661 SKVSSQTMAV 670 (1051)
Q Consensus 661 ~~~~~~~~~~ 670 (1051)
..+...+.++
T Consensus 310 ~ELE~kl~~L 319 (319)
T PF09789_consen 310 AELEKKLKTL 319 (319)
T ss_pred HHHHHHHhcC
No 499
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=33.83 E-value=8.3e+02 Score=28.58 Aligned_cols=256 Identities=15% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 001572 424 VRAARDKNGVYVPHERYAQEEAEKKARIEKIEQLENDLNLSEKEVDRFRELYLT------EQEQKLDLESELKECKINLE 497 (1051)
Q Consensus 424 L~~~r~~~g~~~~~e~~~~~e~e~~~~~~~i~~le~~l~~~~~el~~l~~~~~~------~~~~~~~l~~~l~~~~~~l~ 497 (1051)
....+..+|+.-....+..+........+.|......++....+...+|..|.. -......+...+.+.+.-|.
T Consensus 59 ~~~i~~~~g~~~~~~~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~Wtr~~S~~~~~~l~~~~~k~~~~L~ 138 (356)
T cd09237 59 LMEIVSGLKSSSVDSQLELLRPQSASWVNEIDSSYNDLDEEMKEIEKMRKKILAKWTQSPSSSLTASLREDLVKLKKSLV 138 (356)
T ss_pred HHHHHHhccCCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHH--------HHH-----------------------HHHHHhhHHHHHHHHHHHHHHHH
Q 001572 498 NRSKALLDLQEKHMIALSTLKKK--------EFI-----------------------ISKLLCSEKSIIEQAKELRNELQ 546 (1051)
Q Consensus 498 ~~~~~l~~l~~~~~~~~~~l~e~--------~~~-----------------------~~~~~~~e~~l~~~~~~L~~~l~ 546 (1051)
.....-..+...+......+..- .++ +......-..+......|+....
T Consensus 139 ~A~~SD~~l~~~~~~~~~~l~lL~~~~~~l~~~~~~p~~~~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~eR~ 218 (356)
T cd09237 139 EASASDEKLFSLVDPVKEDIALLLNGGSLWEELFGFSSSGSPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEERQ 218 (356)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhcCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 001572 547 NASEDITSLFSKLDQKDRMEAENQSL----VLSFGSQLDQSLKGLHKTILGSVSQQQQQLRCMEEHAQSFLASKCDATHI 622 (1051)
Q Consensus 547 ~~~~d~~~l~~kl~rk~~~~~~n~~~----~~~f~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 622 (1051)
...+++...-.+-+=...+....+.. -.-|..+|.+ .+-+...+...+..|...+..+....+.|..... +..
T Consensus 219 ~~~~~Lk~k~~~DDI~~~ll~~~~~~~~~~e~lF~~eL~k-f~p~~~~l~~~~~~Q~~ll~el~~~~~~f~~~~~--~~~ 295 (356)
T cd09237 219 RVLKDLKQKIHNDDISDILILNSKSKSEIEKQLFPEELEK-FKPLQNRLEATIFKQSSLINELKIELDKLFKLPG--VKE 295 (356)
T ss_pred HHHHHHHHHHhccchHHHHHHhcccccchHHHHHHHHHHH-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--Hhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 001572 623 LESRIKRMSETYTAGLELLKELDNSMQKKASSDMEQISSKVSSQTMAVEQFLVTMVSEGKEVIEDIKNSLSQ 694 (1051)
Q Consensus 623 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 694 (1051)
...+.......-...++.+...-....+......+... ||..+...+..+-+.+...+..
T Consensus 296 ~~~~~~~~~~~R~~~l~~l~~ay~~y~el~~~l~~G~~------------FY~dL~~~~~~l~~~~~~fv~~ 355 (356)
T cd09237 296 KQSKEKSKQKLRKEFFEKLKKAYNSFKKFSAGLPKGLE------------FYDDLLKMAKDLAKNVQAFVNQ 355 (356)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH------------HHHHHHHHHHHHHHHHHHHhhc
No 500
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.79 E-value=1e+03 Score=29.72 Aligned_cols=180 Identities=8% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHH
Q 001572 595 VSQQQQQLRCMEEHAQSFLASKCDATHILESRIKRMSETYTAGLELLKELDNSMQKK--ASSDMEQISSKVSSQTMAVEQ 672 (1051)
Q Consensus 595 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 672 (1051)
.+-.+=..+.++--...|+..+.....++...+..++.....+++.|.+.+++.... ....+++--......-..+++
T Consensus 558 ~E~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~ 637 (741)
T KOG4460|consen 558 EECLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMN 637 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001572 673 FLVTMVSEGKEVIEDIKNSLSQQKELLALSAQQQEEGLQRSWISSQEISKATMDFFNDIHRQASKLKTILEESQTEKSKE 752 (1051)
Q Consensus 673 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 752 (1051)
.++.+...+.+-+--+...=.+.++++ ..+..+-.+++.+++.++.-- .+=+.|++..+....+.
T Consensus 638 ~~~~L~~~~~~~lp~l~~AErdFk~El-q~~~~~~~~L~~~iET~~~~~--------------~KQ~~H~~~v~~al~K~ 702 (741)
T KOG4460|consen 638 RMKKLLHSFHSELPVLSDAERDFKKEL-QLIPDQLRHLGNAIETVTMKK--------------DKQQQHMEKVLSALPKP 702 (741)
T ss_pred HHHHHHhcccccCCcchhHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhhccCC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHh
Q 001572 753 LDNFKKTFKEEAAKEEKDALEKIAVILANLTSRKTAM 789 (1051)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~i~~ll~~~~~~~~~~ 789 (1051)
-..+..+-..+...--.+|-..|..++..-..-.+.+
T Consensus 703 ~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~~v 739 (741)
T KOG4460|consen 703 TYILSAYQRKCIQSILKELGEHIREMVKQVKDIRNHV 739 (741)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Done!