BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001573
(1051 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CG46|SMC5_MOUSE Structural maintenance of chromosomes protein 5 OS=Mus musculus
GN=Smc5 PE=2 SV=1
Length = 1101
Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust.
Identities = 330/1070 (30%), Positives = 568/1070 (53%), Gaps = 72/1070 (6%)
Query: 11 VSRGEDDYMPGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGD 70
+ R ++ G+I+ I + NF+T+D PG LN++IG NG+GKSS+VCAI L L G
Sbjct: 41 LPRPSGTFVEGSIVRIAMENFLTYDICEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGK 100
Query: 71 TQLLGRATSIGAYVKRGEESGYIKISLRGDTKEEHLTIMRKIDT-RNKSEWFFNGKVVPK 129
+GRA +G +VKRG G ++I L + +L I R+ID +N+S WF N K V +
Sbjct: 101 PAFMGRADKVGFFVKRGCSKGLVEIELFRTSG--NLIITREIDVIKNQSFWFINKKPVTQ 158
Query: 130 GEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVGDPQLPVQHCALVEK 189
V E NIQV NL QFLPQD+V EFAKLS ++LLE TEK+VG P++ HC L
Sbjct: 159 KIVEEQVAALNIQVGNLCQFLPQDKVGEFAKLSKIELLEATEKSVGPPEMHRYHCELKNF 218
Query: 190 SSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMK 249
K K +E + K + L ++ N ++DVER +R L+ +E ++ K PW++Y+
Sbjct: 219 REKEKQLETSCKEKTEYLEKMVQRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENV 278
Query: 250 KAEYIAAK---EQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENS 306
+ EY K ++ K+ +KL E + ++ IE +++ L+ K+ S+ I E S
Sbjct: 279 RQEYEGVKLIRDRVKEEVRKLKEGQIPM---TRRIEEIDRQRHTLEVRIKEKSTDIKEAS 335
Query: 307 ---KRRMDFLEKVDQVGVQVQGKYKEMQELRRQEQSRQQRILKAREELAAAELDLQTVPA 363
K+R D +E+ D+ Q++ + + + +E RQ+RI R+ + + +L+T
Sbjct: 336 QKCKQRQDLIERKDR---QIKELQQALTVKQNEELDRQKRISNTRKMIEDLQSELKTAEN 392
Query: 364 YE---PPHDKIEKLGSQILELGVQANQKRLQKSEKEKILNQNKLTLRQCSDRLKD-MEDK 419
E P D + ++ E + + K ++++L + + ++ R + M K
Sbjct: 393 CENLQPQIDTVTNDLRRVQEEKALCEGEIIDKQREKEMLEKQRRSVSDHITRFDNLMNQK 452
Query: 420 NNKLLHALRNSGAENIFEAYCWLQQHRHELNKEAYGPVLLEVNVSNRAHANYLEDHVGHY 479
+KL R++ ++A WL+ +R + P++L +N+ + +A Y+E+H+
Sbjct: 453 EDKLRQRYRDT-----YDAVLWLRNNRDRFKQRVCEPIMLTINMKDNKNAKYVENHISSN 507
Query: 480 IWKSFITQDAGDRDFLAKNLK--------PFDVPILNYVSNESSRKEPFQISEEMRALGI 531
++F+ + D + + ++ P ++Y K P + +++ G
Sbjct: 508 DLRAFVFESQEDMEIFLREVRDNKKLRVNAVIAPKISYAD-----KAPSRSLNDLKQYGF 562
Query: 532 SARLDQVFDAPHAVKEVLISQFGLDSSYIGSKETDQKADNVAKLGIL-DFWTPENHYRWS 590
+ L ++FDAP V L Q+ + +G++ T ++ + V + L +T E Y
Sbjct: 563 FSYLRELFDAPDPVMSYLCCQYHIHEVPVGTERTRERIERVIQETRLKQIYTAEEKYVLK 622
Query: 591 ISRYGGHVSASVEPVNQSRLLLCSVDGNEIERLRSKKKKLEESVDELEESLKSMQTEQRL 650
S Y V +S + ++ L +VD + L + K++ ++ ++ L +++ R
Sbjct: 623 TSVYSNKVISSNTSLKVAQFLTVTVDLEQRRHLEEQLKEMNRQLEAVDSGLAALRDTNRH 682
Query: 651 IEDEAAKLQKEREEIINIVQIEKRKRREMENHI---------------NLRKRKLESIEK 695
+E + +L+ +++E++ K ++R++E I NL + + ++ K
Sbjct: 683 LELKDNELRLKKKELLE----RKTRKRQLEQKISSKLASIRLMEQDTCNLEEEERKASTK 738
Query: 696 EDDINTALAKLVDQAADLNIQQFKYAIEIKNLLVEIVSCKWSYAEKHMASIEFDAKIREL 755
+IN AKLV + L + I+ +L+++ + +EK+ ++ A +L
Sbjct: 739 IKEINVQKAKLVTELTGLVKICTSFQIQKVDLILQNTTV---ISEKNKLEADYMASSSQL 795
Query: 756 EFNLKQHEKLALQASLHYEDCKKEVEHCRKHLSDAKRQAESIAFIT--PELEK------- 806
+Q +L + CK+ ++ R+ + + QA F T P +
Sbjct: 796 RVTEQQFIELDDNRQRLLQKCKELMKKARQVCNLSADQAVPQEFQTQVPTIPNGHSSSPP 855
Query: 807 -EFLEMPTTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELK 865
F ++P T++E++A + + S+A+ LN ++++EY R+ +I+ L+ + + K EL
Sbjct: 856 MAFQDLPNTLDEIDALLTEERSRASCFTGLNPSVVEEYSKREVEIQQLTEELQGKKVELD 915
Query: 866 RFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSL-DEHESDFDKFGILIKV 924
+ I +KE+WL L+ LV +INE FS F M AGEV L E+E D+DK+GI I+V
Sbjct: 916 EYRENISQVKERWLNPLKELVEKINEKFSNFFSSMQCAGEVDLHTENEEDYDKYGIRIRV 975
Query: 925 KFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQ 984
KFR S QL L+ HHQSGGERSVST+LYL++LQ+L CPFRVVDEINQGMDPINER++F+
Sbjct: 976 KFRSSTQLHELTPHHQSGGERSVSTMLYLMALQELNRCPFRVVDEINQGMDPINERRVFE 1035
Query: 985 QLVRAASQPNTPQCFLLTPKLLPDLEYSEACSILNIMNGPWIEQPSKVWS 1034
+V A + NT Q F +TPKLL +L YSE ++L + NGP + +P++ W+
Sbjct: 1036 MVVNTACKENTSQYFFITPKLLQNLPYSEKMTVLFVYNGPHMLEPNR-WN 1084
>sp|Q8IY18|SMC5_HUMAN Structural maintenance of chromosomes protein 5 OS=Homo sapiens
GN=SMC5 PE=1 SV=2
Length = 1101
Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust.
Identities = 330/1056 (31%), Positives = 560/1056 (53%), Gaps = 58/1056 (5%)
Query: 18 YMPGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRA 77
++ G+I+ I + NF+T+D PG LN+++G NG+GKSS+VCAI L L G +GRA
Sbjct: 48 FVEGSIVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRA 107
Query: 78 TSIGAYVKRGEESGYIKISLRGDTKEEHLTIMRKIDT-RNKSEWFFNGKVVPKGEVLEIT 136
+G +VKRG G ++I L + +L I R+ID +N+S WF N K + V E
Sbjct: 108 DKVGFFVKRGCSRGMVEIELFRASG--NLVITREIDVAKNQSFWFINKKSTTQKIVEEKV 165
Query: 137 KRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVGDPQLPVQHCALVEKSSKLKTI 196
NIQV NL QFLPQD+V EFAKLS ++LLE TEK++G P++ HC L K K +
Sbjct: 166 AALNIQVGNLCQFLPQDKVGEFAKLSKIELLEATEKSIGPPEMHKYHCELKNLREKEKQL 225
Query: 197 ECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKKAEYIAA 256
E + K + L ++ N ++DVER +R L+ +E ++ K PW++Y+ + EY
Sbjct: 226 ETSCKEKTEYLQKMVQRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEY--- 282
Query: 257 KEQEKDAKKKLDEAANTLHEFSKP----IEGKKQEKAILDGDCKKLSSLINENS---KRR 309
E+ K + ++ E L E P IE + E+ L+ K+ ++ I E S K++
Sbjct: 283 -EEVKLVRDRVKEEVRKLKEGQIPVTCRIEEMENERHNLEARIKEKATDIKEASQKCKQK 341
Query: 310 MDFLEKVDQVGVQVQGKYKEMQELRRQEQSRQQRILKAREELAAAELDLQTVPAYE---P 366
D +E+ D+ ++Q Q +E RQ+RI R+ + + +L+T E P
Sbjct: 342 QDVIERKDKHIEELQQALIVKQN---EELDRQRRIGNTRKMIEDLQNELKTTENCENLQP 398
Query: 367 PHDKIEKLGSQILELGVQANQKRLQKSEKEKILNQNKLTLRQCSDRLKD-MEDKNNKLLH 425
D I +I + + + K + + L + K ++ R + M K +KL
Sbjct: 399 QIDAITNDLRRIQDEKALCEGEIIDKRRERETLEKEKKSVDDHIVRFDNLMNQKEDKLRQ 458
Query: 426 ALRNSGAENIFEAYCWLQQHRHELNKEAYGPVLLEVNVSNRAHANYLEDHVGHYIWKSFI 485
R++ ++A WL+ +R + + P++L +N+ + +A Y+E+H+ ++F+
Sbjct: 459 RFRDT-----YDAVLWLRNNRDKFKQRVCEPIMLTINMKDNKNAKYIENHIPSNDLRAFV 513
Query: 486 TQDAGDRDFLAKNLKPFDVPILNYVSNESSR---KEPFQISEEMRALGISARLDQVFDAP 542
+ D + K ++ +N V S K P + E++ G + L ++FDAP
Sbjct: 514 FESQEDMEVFLKEVRDNKKLRVNAVIAPKSSYADKAPSRSLNELKQYGFFSYLRELFDAP 573
Query: 543 HAVKEVLISQFGLDSSYIGSKETDQKADNVAKLGIL-DFWTPENHYRWSISRYGGHVSAS 601
V L Q+ + +G+++T ++ + V + L +T E Y S Y V +S
Sbjct: 574 DPVMSYLCCQYHIHEVPVGTEKTRERIERVIQETRLKQIYTAEEKYVVKTSFYSNKVISS 633
Query: 602 VEPVNQSRLLLCSVDGNEIERLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKE 661
+ ++ L +VD + L + K++ + ++ L +++ + +E + +L+++
Sbjct: 634 NTSLKVAQFLTVTVDLEQRRHLEEQLKEIHRKLQAVDSGLIALRETSKHLEHKDNELRQK 693
Query: 662 REEIINIVQIEKRKRREMENHINLRKRKLESIEKED-DINTALAKLVDQAADLNIQQFKY 720
++E++ K K+R++E I+ + L+ +E++ ++ K + ++N+Q+ K
Sbjct: 694 KKELLE----RKTKKRQLEQKISSKLGSLKLMEQDTCNLEEEERKASTKIKEINVQKAKL 749
Query: 721 AIEIKNLL----------VEIVSCKWSY-AEKHMASIEFDAKIRELEFNLKQHEKLALQA 769
E+ NL+ V+++ + +EK+ ++ A +L + +L
Sbjct: 750 VTELTNLIKICTSLHIQKVDLILQNTTVISEKNKLESDYMAASSQLRLTEQHFIELDENR 809
Query: 770 SLHYEDCKKEVEHCRKHLSDAKRQAESIAFIT----------PELEKEFLEMPTTIEELE 819
+ CK+ ++ R+ + Q + T L F ++P T++E++
Sbjct: 810 QRLLQKCKELMKRARQVCNLGAEQTLPQEYQTQVPTIPNGHNSSLPMVFQDLPNTLDEID 869
Query: 820 AAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWL 879
A + + S+A+ LN I+QEY R+ +IE L+ + + K EL ++ I +KE+WL
Sbjct: 870 ALLTEERSRASCFTGLNPTIVQEYTKREEEIEQLTEELKGKKVELDQYRENISQVKERWL 929
Query: 880 PTLRNLVAQINETFSRNFQEMAVAGEVSL-DEHESDFDKFGILIKVKFRQSGQLEVLSAH 938
L+ LV +INE FS F M AGEV L E+E D+DK+GI I+VKFR S QL L+ H
Sbjct: 930 NPLKELVEKINEKFSNFFSSMQCAGEVDLHTENEEDYDKYGIRIRVKFRSSTQLHELTPH 989
Query: 939 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQC 998
HQSGGERSVST+LYL++LQ+L CPFRVVDEINQGMDPINER++F+ +V A + NT Q
Sbjct: 990 HQSGGERSVSTMLYLMALQELNRCPFRVVDEINQGMDPINERRVFEMVVNTACKENTSQY 1049
Query: 999 FLLTPKLLPDLEYSEACSILNIMNGPWIEQPSKVWS 1034
F +TPKLL +L YSE ++L + NGP + +P+ W+
Sbjct: 1050 FFITPKLLQNLPYSEKMTVLFVYNGPHMLEPN-TWN 1084
>sp|Q802R9|SMC5_TAKRU Structural maintenance of chromosomes protein 5 OS=Takifugu rubripes
GN=smc5 PE=2 SV=1
Length = 1092
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 341/1073 (31%), Positives = 552/1073 (51%), Gaps = 94/1073 (8%)
Query: 19 MPGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRAT 78
M G+I+ I + NF+T+D+ PG LN+++G NG+GKSS+VCAI L L G T +LGR
Sbjct: 40 MDGSILRITMRNFLTYDYTEVYPGPNLNMIVGANGTGKSSIVCAICLGLAGKTAVLGRGD 99
Query: 79 SIGAYVKRGEESGYIKISLRGDTKEEHLTIMRKIDT-RNKSEWFFNGKVVPKGEVLEITK 137
+G YVKRG + G I+I L +L I R+I N+S W NGK + V E K
Sbjct: 100 KVGLYVKRGCQKGSIEIELYKHGG--NLVITREIHVENNQSHWMINGKQRNQKAVEEEVK 157
Query: 138 RFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVGDPQLPVQHCALVEKSSKLKTIE 197
IQV+NL QFLPQ++V EFAK+S +LLE TEK+VG P++ HC L SK + +E
Sbjct: 158 NLCIQVSNLCQFLPQEKVGEFAKMSKTELLEATEKSVGPPEMFEFHCELKNFRSKERELE 217
Query: 198 CTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKKAEYIAAK 257
TV + + K N + DV R ++ L+ +E ++KK PW++Y+ + E + K
Sbjct: 218 NTVTEKTKYIEKAKQRNERNKHDVNRYYEKKRHLDMIELLEKKKPWVEYESTRKELESVK 277
Query: 258 EQEKDAKK--------------KLDEAANTLHEFSKPIEGKKQEKAILDG--DCKKLSSL 301
+ ++AK+ K+ E + L F I K Q AI D CK+
Sbjct: 278 REREEAKRNLSALRHSQAPMIRKIKEIEDRLQPFDDQI--KSQTAAIKDAALKCKQKQDQ 335
Query: 302 INENSKRRMDFLEKVDQVGVQVQGKYKEMQELRRQEQ-SRQQRILK-AREELAAAELDLQ 359
++ R+ +E ++Q K KEM+E Q++ S +RI++ R ELA E
Sbjct: 336 LD----RKQKEIEDINQAF-----KLKEMEEDDHQKRISNTRRIIEDLRTELAKVEDQPD 386
Query: 360 TVPAYEPPHDKIEKLGSQILELGVQANQKRLQKSEKEKILNQNKLTLRQCSDRLKDMEDK 419
P +I + S++ Q + R+ EK ++ + QC K + D
Sbjct: 387 VTP-------RINDVNSELRR--NQIERARID-GEKCELCREKDNAFAQCRSLQKKLNDM 436
Query: 420 NN-------KLLHALRNSGAENIFEAYCWLQQHRHELNKEAYGPVLLEVNVSNRAHANYL 472
NN KL R++ A A WL+Q+R+ Y P+LLE+NV + A Y+
Sbjct: 437 NNLMKVKEEKLRGRHRDTHA-----ALQWLRQNRNRFRGNVYEPMLLEINVKDHRFAKYV 491
Query: 473 EDHVGHYIWKSFITQDAGDRD-FLAKNLKPFDVPILNYVSNESSRK--EPFQISEEMRAL 529
E+H+ ++F+ Q D + F+++ ++ + + + E SR +P Q E++R
Sbjct: 492 ENHISFQDLRAFVFQRKEDMEIFMSEVRDKMNLKVNSISAPEQSRSKAQPSQNIEDLRRF 551
Query: 530 GISARLDQVFDAPHAVKEVLISQFGLDSSYIGSKETDQKADNVAK-LGILDFWTPENHYR 588
G L ++FDAP V L Q+ + + +G+++T V + L + +T + Y
Sbjct: 552 GFFTYLREMFDAPDEVMSYLCQQYNVHNVPVGTEQTKTMIRQVIEELNLRVLFTLDERYM 611
Query: 589 WSISRYGGHVSASVEPVNQSRLLLCSVDGNEIERLRSKKKKLEESVDELEESLKSMQTEQ 648
S Y +S PVN S+ L +VD E +L + E E++E LK++Q E
Sbjct: 612 LKRSVYSKMISTINSPVNPSQYLSIAVDAEEKRQLEQELNACELRFREIDERLKALQRET 671
Query: 649 RLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESIEKE-DDINTALAKLV 707
+++ +L E++++ + K K+R++E I+ ++ L +E+ D+ +
Sbjct: 672 AVLDRRDNELLAEKKKLSEL----KGKKRQLEQKISTKQDSLRQMEQNVTDLKKIEEETK 727
Query: 708 DQAADLNIQQ------FKYAIEIKNLLVE---IVSCKWSYAEKHMASIEFDAK-----IR 753
++ + +N Q+ F +I++K L +S + +E D + +R
Sbjct: 728 EKVSAVNSQKVTIVKAFIASIKLKATLTMEKVYLSLEMMGLSAEKTKLEHDFREGASLLR 787
Query: 754 ELEFNLKQHEKLALQASLHYEDCKKEVEHCRK--------HLSDAKRQAESIA----FIT 801
++ Q E+ +Q + E K +++ + LS+ R
Sbjct: 788 SMDQRCSQLEQRKVQLT---EQGKGQMKRAKSICNMQPNDSLSEELRNVRVYVIPPYLCV 844
Query: 802 PELEKEFLEMPTTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADK 861
P F ++P T +++++ + + S++ L++N++ EY ++I++L + E K
Sbjct: 845 PSPLMAFAKLPDTPDDIDSMLNEERSRSECFTGLSENVVDEYNRSDQEIKELENELEEKK 904
Query: 862 KELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSL-DEHESDFDKFGI 920
L+ + I KE+WL L+ LV QINE F+ F+ M AGEV L E E D+DK+GI
Sbjct: 905 NALESYRQNISEAKERWLNPLKQLVEQINEKFTAFFRSMNCAGEVDLHSEKEEDYDKYGI 964
Query: 921 LIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINER 980
I+VKF + QL L+ HQSGGERSVST+LYL+SLQ+L CPFRVVDEINQGMDPINER
Sbjct: 965 RIRVKFHSNTQLHELTPFHQSGGERSVSTMLYLMSLQELNRCPFRVVDEINQGMDPINER 1024
Query: 981 KMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSILNIMNGPWIEQPSKVW 1033
++F +V A + T Q F +TPKLL +L+Y+E ++L + NG ++ P++ W
Sbjct: 1025 RVFDIVVGTACKERTSQYFFITPKLLQNLKYAEEMTVLCVHNGAYMLPPNQ-W 1076
>sp|Q5ZJY5|SMC5_CHICK Structural maintenance of chromosomes protein 5 OS=Gallus gallus
GN=SMC5 PE=2 SV=1
Length = 1065
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 321/1064 (30%), Positives = 563/1064 (52%), Gaps = 81/1064 (7%)
Query: 14 GEDDYMPGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQL 73
G+ + G+I+ I + NF+T+D +PG LN++IG NG+GKSS+VCAI L L G
Sbjct: 23 GKPRSVEGSIVRIYMENFLTYDICEVRPGPNLNMIIGANGTGKSSIVCAICLGLAGKPSF 82
Query: 74 LGRATSIGAYVKRGEESGYIKISLRGDTKEEHLTIMRKIDT-RNKSEWFFNGKVVPKGEV 132
LGRA +G +VK+G G ++I L E++ I R+I N S W N K+ V
Sbjct: 83 LGRAEKVGLFVKQGCLKGLVEIELFKVP--ENIIITREIQVVTNTSTWHINRKLTTLKTV 140
Query: 133 LEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVGDPQLPVQHCALVEKSSK 192
E NIQV+NL QFLPQD+V EFA++S ++LLE TEK++G P++ HC L K
Sbjct: 141 EEQVAALNIQVDNLCQFLPQDKVGEFARMSKIELLEATEKSIGPPEMYQFHCKLKSLKEK 200
Query: 193 LKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKKAE 252
+ +E K ++L ++K ++DV+R + L+ ++ +++K PW++Y+
Sbjct: 201 ERELENVCKDKVNSLEKMKQRAERYKQDVDRYHECKRHLDLIDMLQRKRPWVEYE----- 255
Query: 253 YIAAKEQEKDAKKKLDEAA---NTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRR 309
++Q +D K++ D+A L E P+ K +E C++ + +N K
Sbjct: 256 --TVRQQHEDVKQRRDQAKEELKNLKEMQSPLTKKIRE-------CEEFYNSLNMKIKNT 306
Query: 310 MDFLEKVDQVGVQVQG----KYKEMQELRR-------QEQSRQQRILKAREELAAAELDL 358
D ++ V Q + Q K K++ E+ + +E R+++IL A + + +L
Sbjct: 307 ADEIKGVSQKCKEKQDALEMKDKQISEINQALRMKKDEEVDRKKKILSAYKMIDEWNNEL 366
Query: 359 QTVPAYEPPHDKIEKLGSQI-----------LELGVQANQKRLQKSEKEKILNQNKLTLR 407
TV E +I+ + +++ ++G +K Q+ E +I+++ +
Sbjct: 367 NTVTDCENLQPQIDAVNNELKHVQEERANIDSDIGDVTTEKINQERENGRIIDR----IG 422
Query: 408 QCSDRLKDMEDKNNKLLHALRNSGAENIFEAYCWLQQHRHELNKEAYGPVLLEVNVSNRA 467
Q ++ +K E+ L R++ + A WL++++H+ KE P++L +NV +
Sbjct: 423 QLNNIIKVKEET---LQARFRDTHS-----ALMWLRKNKHKFKKEVCEPMMLTINVKDNK 474
Query: 468 HANYLEDHVGHYIWKSFITQDAGDRDFLAKNLKPFDVPILNYVS---NESSRKEPFQISE 524
HA Y+E+H+ K+F+ + D + L+ +N V + P E
Sbjct: 475 HAKYVENHISTNDMKAFVFESQEDMELFLVELRDRQKLRVNAVCAPDKSCAETLPSTPIE 534
Query: 525 EMRALGISARLDQVFDAPHAVKEVLISQFGLDSSYIGSKETDQKADNVAKLGIL-DFWTP 583
E+ G + L ++FDAP V L SQ+ + +G+++T + V K L +T
Sbjct: 535 ELHRYGFFSYLRELFDAPLPVMSYLCSQYHVHEVPVGTEKTRNMIERVIKETKLKQIYTA 594
Query: 584 ENHYRWSISRYGGHVSASVEPVNQSRLLLCSVDGNEIERLRSKKKKLEESVDELEESLKS 643
E Y +S Y ++ + ++ L VD +E +L ++++ ++ + L++ L +
Sbjct: 595 EEKYTIKVSTYTKLSFSTNMCLRPAQFLNYYVDTDERRQLENQQQNIKHILQSLDKQLMT 654
Query: 644 MQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESIEKEDDINTAL 703
+ Q+ +E +L+++++E++ +R+++E+ I ++ + +E ++ IN L
Sbjct: 655 LCERQKHLECRDNELRQQKKELLE----RGSRRKQLESKIAVKYDSIRQLE-QNPIN--L 707
Query: 704 AKLVDQAA----DLNIQQFKYAIEIKNLLVEIVSCKWSYAEKHMASIEFDAKIRELEFNL 759
K QA +NIQ+ K E+ + VS A+ + S DA+ LE
Sbjct: 708 EKESQQAKVKIRAINIQKAKLVTELMCHIKNYVSLNICKADLILQSTAVDAEKNRLEAEY 767
Query: 760 KQHEKLALQAS----LHYEDCKKEV-EHCRKHLSDAKRQAESIAF---ITPELEKEFLEM 811
K + L+AS L ++ K+ + E+C++ L A RQ ++ + E + F +
Sbjct: 768 KA-ASVELRASEQRFLELDERKRILTENCKELLKKA-RQMCNMNLDQHLPKEFQTAFQTL 825
Query: 812 PTTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEI 871
P T+EE++A + + S+ + L+ ++++E + +I+ L E +KKEL + I
Sbjct: 826 PDTLEEIDAFLNEERSRVSCFTGLSASVVEECSKQMEEIQKLMESIEENKKELDDYKQSI 885
Query: 872 DALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLD-EHESDFDKFGILIKVKFRQSG 930
+KE+WL L+ ++ INE FS F M GEV L E+E ++DK+GI I+VKF
Sbjct: 886 SKIKERWLNPLKKMIESINEKFSGFFSSMESVGEVDLHVENEEEYDKYGIRIRVKFHNFT 945
Query: 931 QLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAA 990
L L+ +HQSGGE+SVST+LYL++LQ+L CPFRVVDEINQGMDP+NER++F+ V+ A
Sbjct: 946 DLHELTPYHQSGGEKSVSTVLYLMALQELNRCPFRVVDEINQGMDPVNERRVFEMFVKTA 1005
Query: 991 SQPNTPQCFLLTPKLLPDLEYSEACSILNIMNGPWIEQPSKVWS 1034
+ +T Q FL+TPKLL +L Y+E ++L + NGP++ + +K W+
Sbjct: 1006 CKESTSQYFLITPKLLQNLTYNEKMTLLFVYNGPFMLEANK-WN 1048
>sp|Q805A1|SMC5_XENLA Structural maintenance of chromosomes protein 5 OS=Xenopus laevis
GN=smc5 PE=2 SV=1
Length = 1065
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 306/1054 (29%), Positives = 555/1054 (52%), Gaps = 73/1054 (6%)
Query: 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSI 80
G+I+ I++ NF+T+D PG LN+++G NG+GKSS+VCAI L L G T +GRA +
Sbjct: 29 GSIVRIKMENFLTYDQCEVFPGPYLNMIVGANGTGKSSIVCAICLGLAGKTAFIGRADKV 88
Query: 81 GAYVKRGEESGYIKISLRGDTKEEHLTIMRKIDT-RNKSEWFFNGKVVPKGEVLEITKRF 139
G YVKRG + G++++ L + ++ I R+I N+S W+ N K V E
Sbjct: 89 GFYVKRGCQKGFVELELYKTSG--NVIIKREIQVANNQSVWYINHKSATLKTVEEQVPAL 146
Query: 140 NIQVNNLTQFLPQDRV--CEFAKLSPVKLLEETEKA-VGDP---QLPVQHCALVEKSSKL 193
NIQV NL +P R EFA LS ++ ++ K VG P Q+P++ + E +
Sbjct: 147 NIQVGNLCP-IPATRTKFGEFANLSKIETSKKQLKNHVGTPRNVQVPLR---IEELHGEK 202
Query: 194 KTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKKAEY 253
K + K + L +L N ++DVER Q+ +K++ +++K PW++Y+ + +Y
Sbjct: 203 KELAGACKSKAEFLEKLNQRNERYKQDVERYYQQKRHQDKIDMLERKRPWVEYENVRQQY 262
Query: 254 IAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINE---NSKRRM 310
K+ + K +L + ++ I+ ++ + I+D K + I E N K++
Sbjct: 263 EDVKKSCGNFKDELKKLQGLQAPLNQKIQQIEKRQRIIDEKIKDKAIEIKETSKNCKQKQ 322
Query: 311 DFLEKVDQVGVQVQGKYKEMQELRRQEQSRQQRILKAREELAAAELDLQTVPAYE---PP 367
D LE+ D+ Q++ + ++ R EQ RQ++I R+ + E +L + E P
Sbjct: 323 DELEQKDK---QIEEVQQSLRVKRDAEQERQKKIGNIRKMIEDWEKELSAMTNQENIQPE 379
Query: 368 HDKIE-----------KLGSQILELGVQANQKRLQKSEKEKILNQNKLTLRQCSDRLKDM 416
D I + S++ +L ++ + +K EK + Q D L ++
Sbjct: 380 MDSINTDFRRIQDDKANIESEMTDLRMEKDNLEREKKEKANRIKQ--------FDNLMNL 431
Query: 417 EDKNNKLLHALRNSGAENIFEAYCWLQQHRHELNKEAYGPVLLEVNVSNRAHANYLEDHV 476
+++ K +++ + + A WL++++ P++LE+N+ ++ HA Y+E+H+
Sbjct: 432 KEEKLKRMYS-------DTYNAVVWLKENKDRFKNRVCQPMMLEINMKDQRHAKYVENHI 484
Query: 477 GHYIWKSFITQDAGDRDFLAKNLKPFDVPILNYVSNES---SRKEPFQISEEMRALGISA 533
K+F+ + D K ++ +N V + + P + +++ G +
Sbjct: 485 PMNDMKAFVFESQEDMQVFLKEVRDKQNLRVNTVCAPQEPYAEQRPKRPITDLKQYGFFS 544
Query: 534 RLDQVFDAPHAVKEVLISQFGLDSSYIGSKETDQKADNVAK-LGILDFWTPENHYRWSIS 592
L ++FDAP+ V L Q+ + +G+++T + V K + +T E Y S
Sbjct: 545 YLRELFDAPYPVMNYLCYQYKVHEVPVGTEQTRSMIEKVIKETDLRQMYTAEEKYVTKKS 604
Query: 593 RYGGHVSASVEPVNQSRLLLCSVDGNEIERLRSKKKKLEESVDELEESLKSMQTEQRLIE 652
Y + +S + ++ L +VD E +++ + K++E +E S++ + QR ++
Sbjct: 605 VYSQKLISSNVSLKGAQFLTVTVDAEERQQVVDQLKEIERKCSTIETSMEQLAERQRSLD 664
Query: 653 DEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESIEKEDDINTALAKLVDQA-- 710
+L+ ++ I+ + K K+R++E I+ + L +E +D++N L ++ QA
Sbjct: 665 RRDNELRLRKKTILEM----KTKKRQLEQKISTKYDSLNRLE-QDNLN--LEEVQQQANN 717
Query: 711 --ADLNIQQFKYAIEIKNLLVEIVSCKWSYAEKHMASIEFDAKIRELEFNLKQHEKLALQ 768
+LN+Q+ K ++ L+ E S E + S ++ ++E + K +
Sbjct: 718 RIKNLNVQKAKLVKDLLELMKECTSLSIEKVELALQSTAISSEKNKIESDYKSATSQLRE 777
Query: 769 ASLHYEDCKKE----VEHCRKHLSDAKRQAESIA---FITPELEKEFLEMPTTIEELEAA 821
Y+ + + +E+C+ L A RQA ++ + + + F +P +++E++A
Sbjct: 778 LKNQYDGIEAKKLHLLENCKGLLRKA-RQACNLGPNQAVPQDFQTAFQSLPESLDEIDAM 836
Query: 822 IQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPT 881
+ + S+A+ L +++ +Y R ++I++++ + K EL+ + I +KEKWL
Sbjct: 837 LNEERSRASCFTGLTASVVDDYNKRTKEIQEVTEELNRKKLELEDYRKNISQVKEKWLNP 896
Query: 882 LRNLVAQINETFSRNFQEMAVAGEVSL-DEHESDFDKFGILIKVKFRQSGQLEVLSAHHQ 940
L+ L+ +IN+ FS F M GEV L E E ++DK+GI I+VKFR S QL L+ HHQ
Sbjct: 897 LKQLIEKINDQFSSFFSSMQCVGEVDLHTEKEEEYDKYGIRIRVKFRSSTQLHELTPHHQ 956
Query: 941 SGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFL 1000
SGGERSVST+LYL++LQ+L CPFRVVDEINQGMDP+NER++F+ +V+ A + NT Q F
Sbjct: 957 SGGERSVSTMLYLMALQELNRCPFRVVDEINQGMDPVNERRVFEMVVKTACKENTSQYFF 1016
Query: 1001 LTPKLLPDLEYSEACSILNIMNGPWIEQPSKVWS 1034
+TPKLL +L Y+E ++L + NGP++ +P+K W+
Sbjct: 1017 ITPKLLQNLTYAEKMTVLFVYNGPFMLEPTK-WN 1049
>sp|O13710|SMC5_SCHPO Structural maintenance of chromosomes protein 5
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=smc5 PE=1 SV=3
Length = 1076
Score = 312 bits (800), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 298/1083 (27%), Positives = 507/1083 (46%), Gaps = 101/1083 (9%)
Query: 7 KRLKVSRGEDDYMPGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALA 66
KR K + DY G+I+ I+L NF+T+D+ PG LNL+IGPNG+GKS++V AI +
Sbjct: 8 KRRKSNPLYSDYALGSIVRIKLVNFVTYDYCELFPGPYLNLIIGPNGTGKSTIVSAICIG 67
Query: 67 LGGDTQLLGRATSIGAYVKRGEESGYIKISLRGDTKEEHLTIMRKIDTRNKSEWFFNGKV 126
LG +LLGRA ++K G+ + I+I ++ +E +TI R+I S + N +
Sbjct: 68 LGWPPKLLGRAKEAREFIKYGKNTATIEIEMKY-RDDETVTITRQISQDKSSSFSINREA 126
Query: 127 VPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVGDPQLPVQHCAL 186
+ + FN+Q+NNL FLPQDRV EFA+L P L ETE+A+ L H L
Sbjct: 127 CATSSITSLMDTFNVQLNNLCHFLPQDRVAEFAQLDPYSRLMETERAIDHEGLLPAHEKL 186
Query: 187 VEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKY 246
++ + + I + TLN LK EK+V ++R EK++S + L K
Sbjct: 187 IDLRKREREILQNKNQGQSTLNSLKDRQQALEKEVNIFKER----EKIKSYIEMLGLAKM 242
Query: 247 DMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENS 306
+ E Q + KKKL + L E +PI K +E L D K N+ S
Sbjct: 243 LVIYREKTNVFNQLRADKKKLKKDLKDLVEEFQPILDKGEE---LRSDLKLKDDTFNDYS 299
Query: 307 KRRMDFLEKVDQVGVQVQGKYKEMQELRRQEQSRQQRILKAREELAAAELDLQTVPAYEP 366
M+ ++ ++ + + E E+ +++ R L A L L A +
Sbjct: 300 SASME----LNTSNLRARASFSNFME---NEKKLYEKVNTNRTLLRNANLTLNE--AQQS 350
Query: 367 PHDKIEKLGSQILELGVQANQKRLQKSEKEKILNQNK-------------------LTLR 407
E+ G + + GVQ Q+++Q+ EK+ ++N+ + L
Sbjct: 351 VKSLTERQGPRPSDNGVQDLQEKMQEVNAEKLQHENEKLESSHELGSIRTLKAQKLIDLD 410
Query: 408 QCSDRLKDMEDKNNKLLHALRNS-GAENIFEAYCWLQQHRHELNKEAYGPVLLEVNVSNR 466
L D + L + ++ G E+ ++ Y L+++ AYGP+ + + +
Sbjct: 411 NIKRELSYYNDATKRKLDFMSSAPGWEDAYQTYQLLKEYESAFEAPAYGPIYMNLKCKEK 470
Query: 467 AHANYLEDHVGHYIWKSFITQDAGD----RDFLAKNLKPFDVPILNYVSNESSRK----E 518
A +E +++FI + D D + K P + S+E +K E
Sbjct: 471 GFAALIEGFFRTDTFRTFIMSNYNDYLKLMDLITSKTKY--TPTIREFSSERKKKIEDFE 528
Query: 519 PFQISEEMRALGISARLDQVFDAPHAVKEVLISQFGLDSSYIGSKE---TDQKADNVAKL 575
P E++++ G + + P V L + I +E A N +L
Sbjct: 529 PPCSREKLQSFGFDGYVIDFLEGPEVVLVALCHMLKIHQIPIAKRELPPASVNALNNFRL 588
Query: 576 GILD-----FWTPENHYRWSISRYGGH-VSASVEPVNQSRLLLC---------------S 614
D + + + S YG ++ +P+ + +
Sbjct: 589 ANGDPVLKTYLAGSSIHLVFRSAYGDREITRRTDPLPSRSIYFSENVEMDLVKRKEEQLN 648
Query: 615 VDGNEIERLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREE-IINIVQIEK 673
+++E L+++++KL+E V+E ESL S D + L+KER+E +I I + ++
Sbjct: 649 AQLSQLENLQNEERKLQEKVNE-HESLLSRTN------DILSTLRKERDEKLIPIHEWQQ 701
Query: 674 RKRREMENHINLRKRKLESIEKEDDINTALAKLVDQAADLNIQQFKYAIEIKNLLVEIVS 733
+ R + LR+R + + A +++ D+ + F+ A+ L V+ S
Sbjct: 702 LQERIEHQTLLLRQR--------EKVPEQFAAEIEKNEDIRKENFE-ALMNSVLKVKENS 752
Query: 734 CKWSYAEKHMASIEFDAKIRELEFNLKQHEKLALQASLHYEDCKKEVEHCRKHLSDAKRQ 793
K + + M + + E ++ L++HE A Q + + + ++ L+ A+
Sbjct: 753 IKATNNFEKMLGSRLN--VIEAKYKLEKHEMDANQVNARLTEVQDRLKDITDKLASARED 810
Query: 794 AESI-AFITPELEKEFLEMPTTIEEL------EAAIQDNIS-QANSIFFLNQN--ILQEY 843
A S+ + L+ + + T I EL + + + IS + + F+N N ++++Y
Sbjct: 811 AMSLYGSVVDSLQTQSSDRQTAITELNEEFATSSEVDNKISIEETKLKFMNVNSYVMEQY 870
Query: 844 EHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVA 903
+ R+++IE+L +K + ++ E++++KE W+ L V I++ FS+ M A
Sbjct: 871 DARKKEIEELESKMSDFDQSVEELQDEMNSIKEDWVSKLEENVQCISDRFSKGMSGMGYA 930
Query: 904 GEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCP 963
GEV L + + D+DK+ I I V+FR+ L+ L+ QSGGERSVSTI+YL+SLQ L P
Sbjct: 931 GEVRLGKSD-DYDKWYIDILVQFREEEGLQKLTGQRQSGGERSVSTIMYLLSLQGLAIAP 989
Query: 964 FRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSILNIMNG 1023
FR+VDEINQGMDP NER + + +V + Q FL+TPKLLPDL Y +L I NG
Sbjct: 990 FRIVDEINQGMDPRNERVVHRHIVNSVCDNAVSQYFLVTPKLLPDLTYHRNLKVLCICNG 1049
Query: 1024 PWI 1026
W+
Sbjct: 1050 AWL 1052
>sp|Q08204|SMC5_YEAST Structural maintenance of chromosomes protein 5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC5 PE=1 SV=1
Length = 1093
Score = 259 bits (661), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 290/1106 (26%), Positives = 511/1106 (46%), Gaps = 130/1106 (11%)
Query: 4 PRVKRLKVSRGE-DDYMPGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCA 62
PR KR+K+++ + + PG+II+I L +F+T+ LN++IGPNGSGKS+ VCA
Sbjct: 22 PRSKRVKIAKPDLSSFQPGSIIKIRLQDFVTYTLTEFNLSPSLNMIIGPNGSGKSTFVCA 81
Query: 63 IALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRG----------DTKEEHLTIMRKI 112
+ L L G + +GR+ + ++K G++ I+I+L+ D ++E + I R I
Sbjct: 82 VCLGLAGKPEYIGRSKKVEDFIKNGQDVSKIEITLKNSPNVTDIEYIDARDETIKITRII 141
Query: 113 D-TRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETE 171
++ +S++ N V + V + + NIQ++NL QFL Q+RV EFA+L VKLL ET
Sbjct: 142 TRSKRRSDYLINDYQVSESVVKTLVAQLNIQLDNLCQFLSQERVEEFARLKSVKLLVETI 201
Query: 172 KAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKD-----VERVRQ 226
+++ L V +++ +L+ E +++++ D + K +++ QE D VE +R
Sbjct: 202 RSIDASLLDV-----LDELRELQGNEQSLQKDLD-FKKAKIVHLRQESDKLRKSVESLRD 255
Query: 227 RAELLEKVESMKKKLPWLKY-------DMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSK 279
++E + LP++K ++ K EY AK + K ANT
Sbjct: 256 FQNKKGEIELHSQLLPYVKVKDHKEKLNIYKEEYERAKANLRAILKDKKPFANTKKTLEN 315
Query: 280 PIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLEKVDQVGVQVQGKYKEMQELRRQEQS 339
+E ++ ++ + K INE EK++ + +V K + + R + +
Sbjct: 316 QVEELTEKCSLKTDEFLKAKEKINE-------IFEKLNTIRDEVIKKKNQNEYYRGRTKK 368
Query: 340 RQQRILKAREE-LAAAELDLQTVPAYEPPHDKIEKLGSQILELGVQANQKRLQKSE---K 395
Q I+ +E+ L + E+ QT + P E + + E+ + + R SE K
Sbjct: 369 LQATIISTKEDFLRSQEILAQT---HLPEKSVFEDIDIKRKEIINKEGEIRDLISEIDAK 425
Query: 396 EKILNQNKLTL-RQCSDRLKDMEDKNNKLLHALRNSGAENIFEAYCWLQQHRHELNKEAY 454
+N ++ RQ + K + +K+ ++ + + +A +++H E+ +
Sbjct: 426 ANAINHEMRSIQRQAESKTKSLT-TTDKIGILNQDQDLKEVRDAVLMVREH-PEMKDKIL 483
Query: 455 GPVLLEVNVSNRAHANYLEDHVGHYIWKSFITQDAGDRDFLAKN-LKPFDVPILNYVSNE 513
P ++ V+ N A YL V + K+ D+ A L F V + S +
Sbjct: 484 EPPIMTVSAINAQFAAYLAQCVDYNTSKALTVVDSDSYKLFANPILDKFKVNLRELSSAD 543
Query: 514 SSRKEPFQISEEMRALGISARLDQVFDAPHAVKEVLISQFGLDSSYIGSKETDQKADNVA 573
++ P +E +R LG L V ++L + + + +E +
Sbjct: 544 TTPPVP---AETVRDLGFEGYLSDFITGDKRVMKMLCQTSKIHTIPVSRRE-------LT 593
Query: 574 KLGILDFWTPENHYRWSISR--------------YGG-HVSASVEPVNQSRLLLCSVDGN 618
I TP + + R YG V + + Q+ S+ N
Sbjct: 594 PAQIKKLITPRPNGKILFKRIIHGNRLVDIKQSAYGSKQVFPTDVSIKQTNFYQGSIMSN 653
Query: 619 EIE-RLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRR 677
E + R+ ++ L+ ++ + +L ++ ++ E ++L + ++I E +
Sbjct: 654 EQKIRIENEIINLKNEYNDRKSTLDALSNQKSGYRHELSELASKNDDI----NREAHQLN 709
Query: 678 EMENHINLRKRKLESI-EKEDDINTALAKLVDQAA-DLNIQQFKYAIEIKNLLVEIVSCK 735
E+ +RK +E++ EK D + K V Q D++ Q + ++ ++LL ++ S
Sbjct: 710 EIRKKYTMRKSTIETLREKLDQLKREARKDVSQKIKDIDDQIQQLLLKQRHLLSKMASSM 769
Query: 736 WSY--AEKHMAS---IEFDAKIRELEFN--LKQHEKLALQASLHYEDCKKEVEHCRKHLS 788
S +K + S ++F+A+ ++ N + + YED KK V+ R
Sbjct: 770 KSLKNCQKELISTQILQFEAQNMDVSMNDVIGFFNEREADLKSQYEDKKKFVKEMRD--- 826
Query: 789 DAKRQAESIAFITPELEKEFLEMPT----TIEELE--------------AAIQDNISQAN 830
TPE + E+ + T E+L + +QD + +
Sbjct: 827 ------------TPEFQSWMREIRSYDQDTKEKLNKVAEKYEEEGNFNLSFVQDVLDKLE 874
Query: 831 S-IFFLNQN-----ILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRN 884
S I +N + IL + R++E +Q D + +K L E A+ E P L +
Sbjct: 875 SEIAMVNHDESAVTILDQVTAELRELEHTVPQQSKDLETIKAKLKEDHAVLE---PKLDD 931
Query: 885 LVAQINETFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGE 944
+V++I+ F+R F + AG V L E D+ ++ I I VKFR + L+ L +H QSGGE
Sbjct: 932 IVSKISARFARLFNNVGSAGAVRL-EKPKDYAEWKIEIMVKFRDNAPLKKLDSHTQSGGE 990
Query: 945 RSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPK 1004
R+VST+LY+++LQ+ T+ PFRVVDEINQGMD NER + + +V A NT Q FL+TPK
Sbjct: 991 RAVSTVLYMIALQEFTSAPFRVVDEINQGMDSRNERIVHKAMVENACAENTSQYFLITPK 1050
Query: 1005 LLPDLEYSEACSILNIMNGPWIEQPS 1030
LL L Y E I +M G WI PS
Sbjct: 1051 LLTGLHYHEKMRIHCVMAGSWIPNPS 1076
>sp|Q924W5|SMC6_MOUSE Structural maintenance of chromosomes protein 6 OS=Mus musculus
GN=Smc6 PE=2 SV=1
Length = 1097
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 248/1097 (22%), Positives = 461/1097 (42%), Gaps = 165/1097 (15%)
Query: 21 GNIIEIELHNFMTFDHLICKP---GSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRA 77
G I I+L NFM H + P GS +N V+G NGSGKS+++ A+ + LGG R
Sbjct: 52 GIIESIQLRNFMC--HSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRG 109
Query: 78 TSIGAYVKRGEESGYIKISLR------------GDT--KEEHLTIMRKIDTRNKSEWFFN 123
+S+ +VK G+ S I I+LR GD+ ++H+++ + KSE
Sbjct: 110 SSLKGFVKAGQNSADISITLRNRGDDAFRANVYGDSIVVQQHISVDGSRSYKLKSE---K 166
Query: 124 GKVVP--KGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKL----SPVKLLEETEKAVGDP 177
G VV K E++ I FNIQV+N L Q+ +F + K KA
Sbjct: 167 GTVVSTRKEELIAILDHFNIQVDNPVSVLTQEMSKQFLQSKNEGDKYKFFM---KATQLE 223
Query: 178 QLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESM 237
Q+ + ++E + K + + + L +LK +E+E+ + + + + +E +
Sbjct: 224 QMKEDYSYIMETKERTKE---QINQGEERLTELKRQCLEKEERFQNIAGLSTMKTNLEYL 280
Query: 238 KKKLPW------------LKYDMKKAEYIAAKEQEK---------DAKKKLDEAANTLHE 276
K ++ W ++ ++K E AAK K DA+KK + + L +
Sbjct: 281 KHEMAWAVVNEIEKQLNAIRDNIKIGEERAAKLDRKMEEQQVRLNDAEKKYKDIQDKLEK 340
Query: 277 FSKPIEGKKQEKAILDGDCKKLSSLINENS---KRRMDFLEKVDQVGVQVQGKYKEM--- 330
S+ + E L D + N+ R ++ + + + G Q+ + +E+
Sbjct: 341 ISEETNARAPECMALKTDVIARTRAFNDAEVLYNRSLNEYKALKKDGEQLCKRIEELKKS 400
Query: 331 --QELRRQEQSRQQRILKAREELAAAELDLQTVPAYEPPHDKIEKLGSQILELGVQANQK 388
Q L + RQ+RI +E++ A + TV + + E+ I + + +
Sbjct: 401 TDQSLEPERLERQKRICWLKEKVKALQDQEHTV------NQEAEQFEQAIEKDKQEHGRV 454
Query: 389 RLQKSEKEKILNQNKLTLRQCSDRLKDMEDKNNKLLHALRNSGAENIFEAYCWLQQHRHE 448
R + E LN N+ L++ D D + + AL E I +AY R +
Sbjct: 455 RKEDIEVRHALNYNQRQLKELKDSKTDRLKRFGPHVPAL----LEAIDDAY-----RRRQ 505
Query: 449 LNKEAYGPVLLEVNVSNRAHANYLEDHVGHYIWKSFITQDAGDRDFLAKNLKPFDVPILN 508
+ GP+ +++ + A +E + + +++ + D L +K F P
Sbjct: 506 FTHKPIGPLGACIHLRDPELALAIESCLKG-LLQAYCCHNHADERVLQSLMKKFYPP--- 561
Query: 509 YVSNESSRKEPFQISEEMRALGISARLDQVFD-----APHAVKEVLISQFGLDSSYIGSK 563
+SR P I E R D+V+D A H +++ +D++ + +
Sbjct: 562 ----GTSR--PQIIVSEFR--------DEVYDVRLRAAYHPEFPTVLTALEIDNAVVANS 607
Query: 564 ETDQKA--------DNVAKLGILDFWTPENHYRWSISRYGGHVSASVEPVNQS---RLLL 612
D ++ +N ++ P + R + + G V A ++S + L
Sbjct: 608 LIDMRSIETVLLIKNNSVARAVMQSQKPPKNCREAFTADGDQVFAGRYYSSESTRPKFLS 667
Query: 613 CSVDGNEIERLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIE 672
VD +EI L ++ + + + L++ L +++ + + E+ + Q +EI ++
Sbjct: 668 RDVD-SEISDLETEIENKKGHIITLQQRLSALEKDIKRNEELLKRCQLHYKEIKMKIRKN 726
Query: 673 KRKRREMENHINLRKRKLESIEKEDDINTALAKLVDQAADLNIQQFKYAIE-IKNLLVEI 731
+ RE+EN + + ++E E + N ++V++ N++Q K +E +K+L +E
Sbjct: 727 ISEIRELENIEEHQSVDIATLEDEAEENKIKMQMVEK----NMEQQKENMENLKSLKIE- 781
Query: 732 VSCKWSYAEKHMASIEFDA-KIRELEFNLKQHEKLA-------LQASLHYEDCKKE---- 779
AE +I+ ++ EL LK LA + HYED +KE
Sbjct: 782 -------AENKYDTIKLKINQLSELADPLKDELNLADSEVDSQKRGKQHYEDKQKEHLDT 834
Query: 780 -------VEHCRKHLSDAKRQAESIAFITPELEKEFLEMPTTIEELEAAIQ-DNISQANS 831
++ K L + QA I E++K + I L IQ ++ S +
Sbjct: 835 LNKKRRELDMKEKELQEKMSQARQICPERIEVKKSASILDKEINRLRQKIQAEHASHGD- 893
Query: 832 IFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTL----RNLVA 887
+ I+++Y+ + DL K + L+RF+ ++ + T R L
Sbjct: 894 ----REEIMKQYQEARETYLDLDNKV----RTLRRFIKLLEEIMTHRYKTYQQFRRCLTL 945
Query: 888 QINETFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSV 947
+ F + A G+++ D H+++ + I V+ + + SGGERS
Sbjct: 946 RCKLYFDNLLSQRAYCGKMNFD-HKNE----TLSITVQPGEGNKASFNDMRALSGGERSF 1000
Query: 948 STILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLP 1007
ST+ +++SL + PFR +DE + MD +N R +++ A Q LLTP+ +
Sbjct: 1001 STVCFILSLWSIAESPFRCLDEFDVYMDMVNRRIAMDMILKMADSQRFRQFILLTPQSMS 1060
Query: 1008 DLEYSEACSILNIMNGP 1024
L S+ IL M+ P
Sbjct: 1061 SLPSSKLIRILR-MSDP 1076
>sp|Q6P9I7|SMC6_XENLA Structural maintenance of chromosomes protein 6 OS=Xenopus laevis
GN=smc6 PE=2 SV=1
Length = 1128
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 32/245 (13%)
Query: 21 GNIIEIELHNFMTFDHLICKP---GSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRA 77
G I I L NFM H + P G +N VIG NGSGKS+++ A+ + LGG + R
Sbjct: 85 GIIESIFLRNFMC--HSMLGPFRFGPNVNFVIGNNGSGKSAVLTALIVGLGGKAAITNRG 142
Query: 78 TSIGAYVKRGEESGYIKISLRGDTKEEH--------LTIMRKIDTRNKSEWFF---NGKV 126
+SI +VK G+ I I+LR ++ + +T+ +++ T + G V
Sbjct: 143 SSIKGFVKEGQTFAEISITLRNRGQDAYKPDVFGNSITVQQRLTTDGSRTYKLKSATGAV 202
Query: 127 VP--KGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETE------KAVGDPQ 178
V K E+ I FNIQV+N L Q+ F ++ E++ KA Q
Sbjct: 203 VSNKKEELTAILDHFNIQVDNPVSVLTQEMSKHF-----LQSKNESDKYKFFMKATQLEQ 257
Query: 179 LPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMK 238
+ + ++E S+ V+ G+ L L+ +++E+ + + E+ EK+E +K
Sbjct: 258 MKEDYSYIMETKSRTHD---QVENGGERLRDLRQECIQKEERFKSIASLGEMKEKLEDLK 314
Query: 239 KKLPW 243
K+ W
Sbjct: 315 NKMAW 319
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 30/268 (11%)
Query: 774 EDCKKEVEH----CRKHLSDAKRQAESIAFITPELE----------KEFLEMPTTIEELE 819
E+CK+ +H ++HL +++ E +A ELE E +E+ T L+
Sbjct: 847 ENCKRHRKHYEEKLKEHLDRIQKRKEEVAAKEQELEVKISQAKCICPERIEVSRTARSLD 906
Query: 820 AAIQDNISQANSIFFLNQN---ILQEYEHRQRQIEDLSTKQEADKKELKRF---LAEIDA 873
I + NS L+ N I+++Y + + +D+ E K LKRF L EI A
Sbjct: 907 TEINRLREKINSEEVLHGNREEIIKQYHEAKERYQDV----EGKVKHLKRFIKLLDEIMA 962
Query: 874 LKEKWLPTLRN-LVAQINETFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQL 932
+ K R L + F + A +G+++ D H+++ + I V+ + +
Sbjct: 963 QRYKSYQQFRRCLTFRCKIYFDSLLSQRAYSGKINFD-HKNE----TLSITVQPGEGNKA 1017
Query: 933 EVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQ 992
+ SGGERS ST+ +++SL + PFR +DE + MD +N R ++ A
Sbjct: 1018 ALSDMKCLSGGERSFSTVCFILSLWSIAESPFRCLDEFDVYMDMVNRRISMDMMLSMADS 1077
Query: 993 PNTPQCFLLTPKLLPDLEYSEACSILNI 1020
Q LLTP+ + L + IL +
Sbjct: 1078 QRFRQFILLTPQNMSSLPSTSLVRILRM 1105
>sp|Q802R8|SMC6_TAKRU Structural maintenance of chromosomes protein 6 OS=Takifugu
rubripes GN=smc6 PE=2 SV=1
Length = 1090
Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 137/287 (47%), Gaps = 25/287 (8%)
Query: 21 GNIIEIELHNFMTFDHLICKP---GSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRA 77
G + I L+NFM H P GS +N ++G NGSGKS+++ + +ALGG+ Q R
Sbjct: 53 GIVKSITLNNFMC--HANLGPFAFGSNVNFIVGKNGSGKSAILTGLIVALGGNAQATNRG 110
Query: 78 TSIGAYVKRGEESGYIKISLRGDTKEEH--------LTIMRKIDTRNKSEWFF---NGKV 126
+S+ +VK GE + I+L K+ + + I +KI + +G +
Sbjct: 111 SSLKGFVKEGESFAVVSITLNNIGKDAYKPEVYGQAIVIDQKITREGIRTYKLKSQSGHI 170
Query: 127 VP--KGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVGDPQLPVQHC 184
+ K +++ I +NIQVNN L Q+ F L E+ + + QL
Sbjct: 171 ISTKKEDLVTILDYYNIQVNNPVTILTQEMSKYF--LHSKGGAEKYKFFMKATQLEQMKD 228
Query: 185 ALVE-KSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPW 243
V KS+K T++ V+++ + L LK +E+E + + E+ K+E +KK++ W
Sbjct: 229 DFVHIKSTKSVTVD-KVEQHSECLKDLKRDYLEKEDRYKSLASVNEMYTKLEELKKQMAW 287
Query: 244 LKYDMKKAEYIAAKEQ---EKDAKKKLDEAANTLHEFSKPIEGKKQE 287
+ E+ KE+ ++ A K +E + + + EGK+++
Sbjct: 288 ALVGEVEKEFEPMKEKLESDRCATNKFNEKVDEWKKKVEVAEGKQKQ 334
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 95/405 (23%), Positives = 163/405 (40%), Gaps = 51/405 (12%)
Query: 621 ERLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREME 680
+++RS K + E+ D L+ QTEQ+ E + KLQ E ++ N+ + + E+
Sbjct: 693 QQIRSTDKNISENQD----LLRRTQTEQKTTEVKTMKLQLELTDLKNVEEPQSEDLAEL- 747
Query: 681 NHINLRKRKLESIEKEDDINTALAKLVDQAADLNIQQFKYAIEIKNLLVEI--VSCKWSY 738
K E+ E+E + L + AD+ + K +L I V C +
Sbjct: 748 ------KSAFENAEQEYKQHKQLIDTAAEEADVKKVETKLTPLFTSLSCNILWVHCLFVL 801
Query: 739 AEKHMASIEFDAKIRELEFNLKQHEKLALQASLHYEDCKKEVEHCRKHLSDAKRQAESIA 798
++ ++ + + K HEK HYE E HL K ++A
Sbjct: 802 LQEELSKTDQEV------MKCKHHEK-------HYE------ERRNAHLCSIKTLENNVA 842
Query: 799 FITPELEKEFLEMPTTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQE 858
EL++ + E + S I L I + EH+ + E + E
Sbjct: 843 SKEKELQESIAKAKEICPEQLVVRRTARSLDVEITRLKVKIATQREHQGDREEIVREYHE 902
Query: 859 A---------DKKELKRFLAEIDALKEKWLPTL----RNLVAQINETFSRNFQEMAVAGE 905
A K L F+ +D + ++ L R L A+ F + G
Sbjct: 903 ALESYANKAQQIKNLNNFIKCLDRVMDQRLYAYTVLRRFLSARCKYYFDSMLAQRGFTGN 962
Query: 906 VSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFR 965
++ D H+++ + I V+ Q + ++ SGGERS ST+ +++SL +T PFR
Sbjct: 963 MTFD-HKNE----TLSISVQPGQGNKADLNDMRCLSGGERSFSTVCFVLSLWPITEAPFR 1017
Query: 966 VVDEINQGMDPINERKMFQQL-VRAASQPNTPQCFLLTPKLLPDL 1009
+DE + MD N R +Q ++ A+ Q LTP+ + L
Sbjct: 1018 CLDEFDVYMDMANRRNTQRQSGLKMATSQKIRQLIFLTPQSMSSL 1062
>sp|P53692|SMC6_SCHPO Structural maintenance of chromosomes protein 6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=smc6 PE=1 SV=1
Length = 1140
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 132/297 (44%), Gaps = 20/297 (6%)
Query: 17 DYMPGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGR 76
D G I I L NFM D L G R+N VIG NGSGKS+++ + + LG R
Sbjct: 91 DNRVGVIECIHLVNFMCHDSLKINFGPRINFVIGHNGSGKSAILTGLTICLGAKASNTNR 150
Query: 77 ATSIGAYVKRGEESGYIKISLRGDTKEEH--------LTIMRKIDTRNKSEW---FFNGK 125
A ++ + VK+G+ I +++ E + +TI R I SE+ FNG
Sbjct: 151 APNMKSLVKQGKNYARISVTISNRGFEAYQPEIYGKSITIERTIRREGSSEYRLRSFNGT 210
Query: 126 VVP--KGEVLEITKRFNIQVNNLTQFLPQDRVCEF-AKLSPVKLLEETEKAVGDPQLPVQ 182
V+ + E+ I +Q++N L QD +F SP + + K + QL +
Sbjct: 211 VISTKRDELDNICDHMGLQIDNPMNILTQDTARQFLGNSSPKEKYQLFMKGIQLKQLE-E 269
Query: 183 HCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLP 242
+ +L+E+S L + + ++ L E + E+ R+ L +E K ++
Sbjct: 270 NYSLIEQS--LINTKNVLGNKKTGVSYLAKKEEEYKLLWEQSRETENLHNLLEQKKGEMV 327
Query: 243 WLKYDMKKAEYIAAKEQEKDAKKKLDEAANTLHEF---SKPIEGKKQEKAILDGDCK 296
W + + E + A+++ + A+ KL EA L I+GK K + G K
Sbjct: 328 WAQVVEVEKELLLAEKEFQHAEVKLSEAKENLESIVTNQSDIDGKISSKEEVIGRAK 384
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 935 LSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPN 994
+S SGGE+S +TI L+S+ + +CP R +DE + MD +N + +V +A +
Sbjct: 1039 VSVQGLSGGEKSFATICMLLSIWEAMSCPLRCLDEFDVFMDAVNRLVSIKMMVDSAKDSS 1098
Query: 995 TPQCFLLTPK 1004
Q +TP+
Sbjct: 1099 DKQFIFITPQ 1108
>sp|Q12749|SMC6_YEAST Structural maintenance of chromosomes protein 6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC6 PE=1
SV=1
Length = 1114
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 13/157 (8%)
Query: 20 PGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATS 79
G I ++ L NFM +H + GSRLN ++G NGSGKS+++ AI + LG R +S
Sbjct: 79 SGYIKKVILRNFMCHEHFELELGSRLNFIVGNNGSGKSAILTAITIGLGAKASETNRGSS 138
Query: 80 IGAYVKRGEESGYIKISLRGDTKEEHL-------TIMRKIDTRNKSEWFF----NGKVVP 128
+ ++ G S I + L + I+ +I R+ F NGK +
Sbjct: 139 LKDLIREGCYSAKIILHLDNSKYGAYQQGIFGNEIIVERIIKRDGPASFSLRSENGKEIS 198
Query: 129 --KGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSP 163
K ++ + F++ V+N FL QD F S
Sbjct: 199 NKKKDIQTVVDYFSVPVSNPMCFLSQDAARSFLTAST 235
>sp|Q59037|SMC_METJA Chromosome partition protein Smc OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=smc PE=3 SV=2
Length = 1169
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 105/193 (54%), Gaps = 11/193 (5%)
Query: 800 ITPELEKEFLEMPTTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEA 859
++ ELEK+ IEELE I + ++ S+ +N +++Y + + ++L K++
Sbjct: 951 VSKELEKK------DIEELEIYIGELENEIKSLEPVNMRAIEDYNYVAERYKELIEKRKE 1004
Query: 860 DKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLDEHESDFDKFG 919
+++ K++L ++ L+ K + ++ + F ++E+ G++SL+ ++ F+ G
Sbjct: 1005 YERDEKKYLQLMEELENKKKEVFMEVFNKVAKNFEEVYKEIGGIGKLSLENEKNPFEG-G 1063
Query: 920 ILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINE 979
ILI R ++LS SGGE+S++ + +L ++Q L PF V+DE++ +D N
Sbjct: 1064 ILIDASPRGK---KLLSLDAMSGGEKSLTALAFLFAIQRLNPSPFYVLDEVDAALDVKN- 1119
Query: 980 RKMFQQLVRAASQ 992
+ +++ AS+
Sbjct: 1120 VSLIADMIKNASK 1132
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 26 IELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVK 85
IEL NF +F L ++GPNGSGKS++V AI LG + RA +
Sbjct: 7 IELKNFKSFKKLSLDIPKGFTAIVGPNGSGKSNIVDAILFVLGKTSAKKLRANRFSGLIT 66
Query: 86 --RGEESGYIKISL-------RGDTKEEHLTIMRKIDTRNKSEWFF--------NGKVVP 128
G+ + + ++ L + + + I+R+I + +++++ K +
Sbjct: 67 YHNGKRADFAEVCLYFTNENNAFNVNADKVGILRRIKSSGETDYYLVWKENDKEKRKKMT 126
Query: 129 KGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPV 164
K E++++ +R + +N+ + Q + + +SP+
Sbjct: 127 KHEIIDLFRRLGLLGDNV---ISQGDLLKIINISPI 159
>sp|Q96SB8|SMC6_HUMAN Structural maintenance of chromosomes protein 6 OS=Homo sapiens
GN=SMC6 PE=1 SV=2
Length = 1091
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 20/253 (7%)
Query: 777 KKEVEHCRKHLSDAKRQAESIAFITPELEKEFLEMPTTIEELEAAIQ-DNISQANSIFFL 835
K+E++ K L + QA I E+EK + I L IQ ++ S +
Sbjct: 833 KRELDMKEKELEEKMSQARQICPERIEVEKSASILDKEINRLRQKIQAEHASHGD----- 887
Query: 836 NQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTL----RNLVAQINE 891
+ I+++Y+ + DL +K + LK+F+ + + E T R L +
Sbjct: 888 REEIMRQYQEARETYLDLDSKV----RTLKKFIKLLGEIMEHRFKTYQQFRRCLTLRCKL 943
Query: 892 TFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTIL 951
F + A G+++ D H+++ + I V+ + + SGGERS ST+
Sbjct: 944 YFDNLLSQRAYCGKMNFD-HKNE----TLSISVQPGEGNKAAFNDMRALSGGERSFSTVC 998
Query: 952 YLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEY 1011
+++SL + PFR +DE + MD +N R +++ A Q LLTP+ + L
Sbjct: 999 FILSLWSIAESPFRCLDEFDVYMDMVNRRIAMDLILKMADSQRFRQFILLTPQSMSSLPS 1058
Query: 1012 SEACSILNIMNGP 1024
S+ IL M+ P
Sbjct: 1059 SKLIRILR-MSDP 1070
>sp|Q6Q1P4|SMC1_ARATH Structural maintenance of chromosomes protein 1 OS=Arabidopsis
thaliana GN=SMC1 PE=2 SV=2
Length = 1218
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 110/237 (46%), Gaps = 13/237 (5%)
Query: 21 GNIIEIELHNFMTF-DHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDT-QLLGRAT 78
G I+++E+ NF ++ H + P +IGPNGSGKS+L+ AI+ LG T QL G
Sbjct: 9 GKILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQL 68
Query: 79 S--IGAYVKRGEE----SGYIKISLRGDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEV 132
I A+ R +E ++++ + D E L R I + SE+ + +VV E
Sbjct: 69 KDLIYAFDDRDKEQRGRKAFVRLVYQMDDGVE-LRFTRSITSAGGSEYRIDNRVVNLDEY 127
Query: 133 LEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVGDPQLPVQHCALVEKSSK 192
+ I V + Q V A +P +L E+ G +L ++ L EK +
Sbjct: 128 NGKLRSLGILVKARNFLVFQGDVESIASKNPKELTGLLEEISGSEELKKEYEGLEEKKAS 187
Query: 193 LKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKK-KLPWLKYDM 248
+ + + T+ K L Q+++ E+ L E+++++K+ + W Y++
Sbjct: 188 AEEKAALIYQKKKTIGNEKKLKKAQKEEAEK---HLRLQEELKALKRERFLWQLYNI 241
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 119/251 (47%), Gaps = 31/251 (12%)
Query: 761 QHEKLALQASLHYEDCKKEVEHCR-KHLSDAKRQAESIA--FITPELEKEFLE--MPTTI 815
Q E+L Q E C E+EH LSDA + +S F EL + +L+ P+
Sbjct: 920 QIEQLISQKQEITEKC--ELEHITLPVLSDAMEEDDSDGPQFDFSELGRAYLQERRPSAR 977
Query: 816 EELEAAIQDNI-SQANSIFFLNQNI--LQEYEHRQRQIEDLSTKQEADKKELKRFLAEID 872
E++EA + I S+ + I N+ L +YE Q + + +S + EA +KE K+ +
Sbjct: 978 EKVEAEFRQKIESKTSEIERTAPNLRALDQYEAIQEKEKQVSQEFEAARKEEKQVADAFN 1037
Query: 873 ALKEK----WLPTLRNLVAQINETFSR----NFQEMAVAGEVSLDEHESDF---DKFGIL 921
+K+K ++ ++ + I++ + + N + ++L+ + F K+ +
Sbjct: 1038 TVKQKRYELFMEAFNHIASNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGIKYTTM 1097
Query: 922 IKVK-FRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINER 980
K FR QL SGGE++V+ + L S+ PF ++DE++ +D +N
Sbjct: 1098 PPTKRFRDMEQL--------SGGEKTVAALALLFSIHSYRPSPFFILDEVDAALDNLNVA 1149
Query: 981 KMFQQLVRAAS 991
K+ + +R+ S
Sbjct: 1150 KV-AKFIRSKS 1159
>sp|P38989|SMC2_YEAST Structural maintenance of chromosomes protein 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC2 PE=1
SV=1
Length = 1170
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 44 RLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLR----- 98
+ N + G NGSGKS+++ AI LG + RA+S+ + + ++G K S+
Sbjct: 26 QFNAITGLNGSGKSNILDAICFVLGIASMSTVRASSLQDLIYKRGQAGVTKASVTIVFDN 85
Query: 99 --------GDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFL 150
G T +++ R++ S++ NG P+ VL++ + + +NN +
Sbjct: 86 TDKSNSPIGFTNSPQISVTRQVVLGGTSKYLINGHRAPQQSVLQLFQSVQLNINNPNFLI 145
Query: 151 PQDRVCEFAKLSPVKLLEETEKAVG 175
Q ++ + + P ++L E+A G
Sbjct: 146 MQGKITKVLNMKPSEILSLIEEAAG 170
>sp|Q9SN90|SMC22_ARATH Structural maintenance of chromosomes protein 2-2 OS=Arabidopsis
thaliana GN=SMC2-2 PE=2 SV=1
Length = 1171
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 22 NIIEIELHNFMTFDHLICKPG--SRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATS 79
+I EI L F ++ PG N + G NGSGKS+++ +I LG RA +
Sbjct: 2 HIKEICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAAN 61
Query: 80 IGAYVKRGEESGYIK--ISLRGDTKEEH-----------LTIMRKIDTRNKSEWFFNGKV 126
+ V + ++G + +S+ D E + +T+ R+I K+++ NGK+
Sbjct: 62 LQELVYKQGQAGITRATVSVTFDNSERNRSPLGHEDHSEITVTRQIVVGGKNKYLINGKL 121
Query: 127 VPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175
+V + + VNN + Q R+ + + P+++L E+A G
Sbjct: 122 AQPNQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPMEILSMLEEAAG 170
>sp|Q9C5Y4|SMC21_ARATH Structural maintenance of chromosomes protein 2-1 OS=Arabidopsis
thaliana GN=SMC2-1 PE=2 SV=2
Length = 1175
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 15/169 (8%)
Query: 22 NIIEIELHNFMTFDHLICKPG--SRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATS 79
+I EI L F ++ G N + G NGSGKS+++ +I LG RA +
Sbjct: 2 HIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAAN 61
Query: 80 IGAYVKRGEESGYIK--ISLRGDTKEEH-----------LTIMRKIDTRNKSEWFFNGKV 126
+ V + ++G K +S+ D E H +T+ R+I ++++ NGK+
Sbjct: 62 LQELVYKQGQAGITKATVSVTFDNSERHRSPLGYEEHPEITVTRQIVVGGRNKYLINGKL 121
Query: 127 VPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175
+V + + VNN + Q R+ + + P ++L E+A G
Sbjct: 122 AQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAG 170
>sp|O94383|SMC1_SCHPO Structural maintenance of chromosomes protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=psm1 PE=1 SV=2
Length = 1228
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 21 GNIIEIELHNFMTF-DHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATS 79
G ++ +E+ NF ++ H I P +IGPNG+GKS+L+ AI+ LG + L R+T+
Sbjct: 2 GRLLRLEVENFKSYRGHQIIGPFEDFTSIIGPNGAGKSNLMDAISFVLGVKSSHL-RSTN 60
Query: 80 IGAYVKRGE---------------ESGYIKISLRGDTKEEHLTIMRKIDTRNKSEWFFNG 124
+ + RG+ + Y+K+ D E+ R I +E+ +
Sbjct: 61 VKELIYRGKILQRDNTDFTDSSNPTTAYVKLMYELDNGEQR-EYKRAITPSGATEYKIDE 119
Query: 125 KVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175
++V E ++ NI V + Q V A SP++L + E+ G
Sbjct: 120 EIVTFSEYCGSLQKENILVRARNFLVFQGDVETIASQSPLELSKLVEQISG 170
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 925 KFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQ 984
+FR QL SGGE++++ + L ++ PF V+DEI+ +D N K+
Sbjct: 1125 RFRDMDQL--------SGGEKTMAALALLFAIHSYQPSPFFVLDEIDAALDQTNVTKIAN 1176
Query: 985 QLVRAAS 991
+ + AS
Sbjct: 1177 YIRQHAS 1183
>sp|Q8TZY2|SMC_PYRFU Chromosome partition protein Smc OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=smc PE=1 SV=2
Length = 1177
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 15/159 (9%)
Query: 19 MPGNIIEIELHNFMTF-DHLICKPGSR-LNLVIGPNGSGKSSLVCAIALALGGDTQLLGR 76
MP I ++EL F ++ + + P S+ ++G NGSGKS++ AI LGG + R
Sbjct: 1 MP-YIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMR 59
Query: 77 ATSIGAYVKRGEE----SGYIKISL------RG-DTKEEHLTIMRKIDTRNKSEWFFNGK 125
A+ I + G + + Y ++++ RG E+ + I R++ +S ++ NG+
Sbjct: 60 ASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGR 119
Query: 126 VVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPV 164
+ E+L+I I + L D + +F K+SP+
Sbjct: 120 RATRSEILDILTAAMISPDGYNIVLQGD-ITKFIKMSPL 157
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 835 LNQNILQEYEHRQRQIEDLSTKQE---ADKKELKRFLAEIDALKEKWLPTLRNLVAQINE 891
+N ++++E +R+ +L +K+E A+K+ + F+ EI+ KEK +R A I+
Sbjct: 966 VNMKAIEDFEIVERRYLELKSKREKLEAEKESIIEFINEIE--KEKKNVFMRTFEA-ISR 1022
Query: 892 TFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTIL 951
FS F +++ G L E+ D F ++++ + +G+ +V SGGE++++ +
Sbjct: 1023 NFSEIFAKLSPGGSARLI-LENPEDPFSGGLEIEAKPAGK-DVKRIEAMSGGEKALTALA 1080
Query: 952 YLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEY 1011
++ ++Q PF + DEI+ +D N +++ L++ +S+ + Q ++T L D+
Sbjct: 1081 FVFAIQKFKPAPFYLFDEIDAHLDDANVKRV-ADLIKESSKES--QFIVIT---LRDVMM 1134
Query: 1012 SEACSILNI 1020
+ A I+ +
Sbjct: 1135 ANADKIIGV 1143
>sp|P47037|SMC3_YEAST Structural maintenance of chromosomes protein 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC3 PE=1
SV=1
Length = 1230
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 117/276 (42%), Gaps = 39/276 (14%)
Query: 46 NLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISL-------- 97
N++IG NGSGKS+ AI L D L R G + +G + S+
Sbjct: 28 NVIIGSNGSGKSNFFAAIRFVLSDDYSNLKREERQG-LIHQGSGGSVMSASVEIVFHDPD 86
Query: 98 -----------RGDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNL 146
RGD + +TI R + + K ++ N + V KG+++ + + +NN
Sbjct: 87 HSMILPSGVLSRGD---DEVTIRRTVGLK-KDDYQLNDRNVTKGDIVRMLETAGFSMNNP 142
Query: 147 TQFLPQDRVCEFAKLSPVKLLEETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDT 206
+PQ ++ + L+ E VG V+ A ++K + + + + +
Sbjct: 143 YNIVPQGKIVALTNAKDKERLQLLEDVVGAKSFEVKLKASLKKMEETEQKKIQINKEMGE 202
Query: 207 LNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKKAEYIAAKEQEKDAKKK 266
LN K +EQE R+ E ++E +K + YD + E I E +
Sbjct: 203 LNS-KLSEMEQE------RKELEKYNELERNRKIYQFTLYDRELNEVINQME-------R 248
Query: 267 LD-EAANTLHEFSKPIEGKKQEKAILDGDCKKLSSL 301
LD + NT++ + I+ + + ++D KKLSS+
Sbjct: 249 LDGDYNNTVYSSEQYIQELDKREDMIDQVSKKLSSI 284
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 919 GILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMD 975
G+ I V F S Q E L SGG+++V I ++++Q + F + DEI+ +D
Sbjct: 1106 GVSISVSF-NSKQNEQLHVEQLSGGQKTVCAIALILAIQMVDPASFYLFDEIDAALD 1161
>sp|Q54I56|SMC6_DICDI Structural maintenance of chromosomes protein 6 OS=Dictyostelium
discoideum GN=smc6 PE=3 SV=1
Length = 1185
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 941 SGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFL 1000
SGGERS ST+ L++ + CPFR +DE + MD +N L+ A + + Q
Sbjct: 1091 SGGERSFSTVSLLLAFWENMECPFRAMDEFDVFMDEVNRSISINLLMSKAEENRSKQYIF 1150
Query: 1001 LTPKLLPDLEYSEACSILNI 1020
+TP L ++ SE + +
Sbjct: 1151 VTPLALNHIKTSEYVKVFRV 1170
>sp|Q69GZ5|SMC_METVO Chromosome partition protein Smc OS=Methanococcus voltae GN=smc PE=3
SV=1
Length = 1199
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Query: 835 LNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFS 894
+N +++Y+ + E+L K++ ++E ++L I ++++ T ++ E +
Sbjct: 1010 VNMRAIEDYDFINERYEELFGKRKEYEQEEGKYLQLISEVQKRKKETFMKTYDRVAENYE 1069
Query: 895 RNFQEMAVAGEVSLDEHESDFDKFGILIKVK--FRQSGQLEVLSAHHQSGGERSVSTILY 952
+ + E+ G++SL+ E F G+LI +Q L+V+S GGE+S++ + +
Sbjct: 1070 QIYGEIGGNGKLSLENEEDPFSG-GLLIDASPMNKQLQNLDVMS-----GGEKSLTALAF 1123
Query: 953 LVSLQDLTNCPFRVVDEINQGMDPIN 978
L ++Q L PF V+DE++ +D N
Sbjct: 1124 LFAIQRLNPSPFYVLDEVDAALDTKN 1149
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 23 IIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGA 82
I EI L NF +F + K ++GPNGSGKS+ + I LG + RA
Sbjct: 4 ISEIHLKNFKSFKNTKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQ 63
Query: 83 YVK--RGEESGYIKISLRGDT 101
+ G+ + Y +++L D
Sbjct: 64 LITYHNGKRADYAEVTLFFDN 84
>sp|P73340|SMC_SYNY3 Chromosome partition protein Smc OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=smc PE=3 SV=1
Length = 1200
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 9/206 (4%)
Query: 809 LEMPTTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFL 868
L+ +EELE +I++ + ++ +N LQEYE + ++ +LS K + E L
Sbjct: 983 LDFANILEELERSIRNGQKRLEAMEPVNMLALQEYEKTEARLGELSEKLQTIAGERTELL 1042
Query: 869 AEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVA-GEVSLDEHESDFDKFGILIKVKFR 927
I+ + ++ +N+ F F E++ G + LD+ E F+ G L V
Sbjct: 1043 LRIENFTTLRRRSFQDAFDAVNKNFQIIFAELSDGDGYLQLDDAEDPFN--GGLNLVAHP 1100
Query: 928 QSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLV 987
+ + LS+ SGGE+S++ + ++ +LQ PF DE++ +D N K+ + +
Sbjct: 1101 KGKPVRRLSSM--SGGEKSLTALSFIFALQRYRPSPFYGFDEVDMFLDGANVEKLSKMVR 1158
Query: 988 RAASQPNTPQCFLLTPKLLPDLEYSE 1013
+ A Q F++ P +E +E
Sbjct: 1159 KQAQQAQ----FIVVSLRRPMIEAAE 1180
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 26 IELHNFMTFDHLICKPG-SRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYV 84
IEL +F +F P +V GPNGSGKS+++ A+ LG ATS G
Sbjct: 7 IELSHFKSFGGTTAIPFLPGFTVVSGPNGSGKSNILDALLFC-------LGLATSKGMRA 59
Query: 85 KR 86
+R
Sbjct: 60 ER 61
>sp|O93308|SMC1A_XENLA Structural maintenance of chromosomes protein 1A OS=Xenopus laevis
GN=smc1a PE=1 SV=1
Length = 1232
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 26 IELHNFMTF-DHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSI---- 80
IE+ NF ++ I P R +IGPNGSGKS+L+ AI+ LG T L R ++
Sbjct: 7 IEIENFKSYKGRQIIGPFHRFTAIIGPNGSGKSNLMDAISFVLGEKTSNL-RVKTLRDLI 65
Query: 81 -GAYV-KRGEESGYIKISLRGDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKR 138
GA V K ++ + D+ EE + ++ SE+ N KVV E + ++
Sbjct: 66 HGAPVGKPAANRAFVSMVYSEDSGEE--KVFSRVIVGGSSEYKINNKVVQLSEYSDSLEK 123
Query: 139 FNIQVNNLTQFLPQDRVCEFAKLSP 163
I + + Q V A +P
Sbjct: 124 LGILIKARNFLVFQGAVESIAMKNP 148
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 941 SGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPIN 978
SGGE++V+ + L ++ PF V+DEI+ +D N
Sbjct: 1129 SGGEKTVAALALLFAIHSYKPSPFFVLDEIDAALDNTN 1166
>sp|Q81ZL2|SMC_COXBU Chromosome partition protein Smc OS=Coxiella burnetii (strain RSA 493
/ Nine Mile phase I) GN=smc PE=3 SV=1
Length = 1169
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 95/196 (48%), Gaps = 14/196 (7%)
Query: 803 ELEKEFLEMP--TTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEAD 860
+LE+ E+P TIE + + + + + +N ++EYE + L KQ AD
Sbjct: 935 DLEQVMAELPEEATIESWQEKLDQLVERIQRMGPINLAAIEEYESVNERKNYLD-KQHAD 993
Query: 861 KKE----LKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLDEHESDFD 916
E LK + +ID + + Q+N+ F F + G +L+ ++D
Sbjct: 994 LTEALEILKNAIHKID---RETRAKFQETYDQVNQQFQSLFPRIFGGGRATLEMTDTDLL 1050
Query: 917 KFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDP 976
G++++ + G+ V + H SGGE++++ + + SL L PF ++DE++ +D
Sbjct: 1051 TAGVIVRAQ--PPGKRNV-TIHMLSGGEKALTAVALVFSLFQLNPAPFCILDEVDAPLDD 1107
Query: 977 INERKMFQQLVRAASQ 992
IN + F QLV+ S+
Sbjct: 1108 INVGR-FCQLVKEMSK 1122
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 26 IELHNFMTF-DHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYV 84
I+L F +F D + +N ++GPNG GKS++V A+ +G + R S+ +
Sbjct: 6 IKLAGFKSFVDPTLIPIRGSMNAIVGPNGCGKSNVVDAVRWVIGETSAKQLRGQSMSDVI 65
Query: 85 KRGEES----GYIKISLRGDTKEEH----------LTIMRKIDTRNKSEWFFNGKVVPKG 130
G S G I L D E + I R+++ +S +F NG V +
Sbjct: 66 FNGTTSRKPVGKASIELHFDNSEGRIGGEYAKYGEIAIRREVERDGQSNYFINGAHVRRR 125
Query: 131 EVLEI 135
+V+++
Sbjct: 126 DVVDV 130
>sp|B9E1H0|SMC_CLOK1 Chromosome partition protein Smc OS=Clostridium kluyveri (strain NBRC
12016) GN=smc PE=3 SV=1
Length = 1185
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 9/167 (5%)
Query: 815 IEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQE---ADKKELKRFLAEI 871
+EE ++ I S + + +N ++EY++ Q++I LS+++E K+ELK+ I
Sbjct: 974 LEEYKSKIVHLKSSISKLGVVNLGAIEEYKNLQKKITFLSSQKEDLIKSKQELKKV---I 1030
Query: 872 DALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQ 931
DA+ EK + ++ + F+ F+E+ G L + D I I V Q
Sbjct: 1031 DAMTEKMKGVFKENFVKLKKNFNDTFRELFKGGSADLVLTKGDELTGNIDITV---QPPG 1087
Query: 932 LEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPIN 978
++ + + SGGE+ +S I L ++ + PF ++DEI +D N
Sbjct: 1088 KKLQNINLMSGGEKGLSAIALLFAMLKIKPTPFCILDEIEASLDDAN 1134
Score = 37.0 bits (84), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 26 IELHNFMTF---DHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGA 82
IE+ F +F LI G + ++GPNGSGKS++ A+ LG + R +
Sbjct: 8 IEIKGFKSFADKTELIFTGG--ITSIVGPNGSGKSNISDAVRWVLGEQSVKTLRGGKMED 65
Query: 83 YVKRGEES----GYIKISLRGDTKEEHL-------TIMRKIDTRNKSEWFFN 123
+ G + G ++SL D +++ L T+ R++ +SE++ N
Sbjct: 66 VIFAGTQFRKPLGLCQVSLTLDNEDKKLSLEYSNITVSRRLYRSGESEYYIN 117
>sp|Q54PK4|SMC2_DICDI Structural maintenance of chromosomes protein 2 OS=Dictyostelium
discoideum GN=smc2 PE=3 SV=1
Length = 1184
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 19/166 (11%)
Query: 45 LNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISL-----RG 99
N + G NGSGKS+++ +I LG R S+ V + ++G K S+
Sbjct: 27 FNAITGLNGSGKSNILDSICFVLGISNLSQVRVDSLQELVYKKGQAGITKASVTITFNNS 86
Query: 100 DTKE-----EHL---TIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLP 151
D K+ EHL T+ R++ ++++ NG V ++ + VNN +
Sbjct: 87 DKKQSPAGYEHLDKITVTRQVAIGGRNKYLINGHNAQLSRVQDLFHSVQLNVNNPHFLIM 146
Query: 152 QDRVCEFAKLSPVKLLEETEKAVGDPQLPVQHCALVEKSSKLKTIE 197
Q R+ + + P ++L E+A G ++ K+S L TIE
Sbjct: 147 QGRITKVLNMKPPEILAMIEEAAGTRMFEMK------KNSALNTIE 186
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 835 LNQNILQEYEHRQRQIEDLSTKQ---EADKKELKRFLAEIDALKEKWLPTLRNLVAQINE 891
+N+ ++ +E +++ ++L K+ E DK +++ + E+D EK +LR ++N+
Sbjct: 983 INRKVMSMFEKAEQEYQELMEKKKIIENDKSKIEHVIRELD---EKKNESLRTTWKKVNK 1039
Query: 892 TFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTIL 951
F F + L+ E + FG+ +KV F G + + SGG++S+ +
Sbjct: 1040 DFGSIFSTLLPGTSAKLEPPEGQNELFGLEVKVAF---GDVWKETLSELSGGQKSLLALS 1096
Query: 952 YLVSLQDLTNCPFRVVDEINQGMD 975
++SL P ++DEI+ +D
Sbjct: 1097 LILSLLLFKPAPMYILDEIDAALD 1120
>sp|O42649|SMC3_SCHPO Structural maintenance of chromosomes protein 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=psm3 PE=1 SV=1
Length = 1194
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 19/167 (11%)
Query: 23 IIEIELHNFMTF-DHLICKPGS-RLNLVIGPNGSGKSSLVCAIALALGGDTQLLGR---- 76
I +I + F ++ D+ + +P S N+++G NGSGKS+ AI L L R
Sbjct: 3 ITKIVIQGFKSYKDYTVIEPLSPHHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLSREERQ 62
Query: 77 --------ATSIGAYVKRGEESGYIKISLRGDTKEEHLTIMRKIDTRNKSEWFFNGKVVP 128
AT + AYV E + R T + + + R I + K E+ + K V
Sbjct: 63 ALLHEGPGATVMSAYV----EVTFANADNRFPTGKSEVVLRRTIGLK-KDEYSLDKKTVS 117
Query: 129 KGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175
K EV+ + + +N +PQ RV + LE ++ G
Sbjct: 118 KTEVINLLESAGFSRSNPYYIVPQGRVTSLTNAKDSERLELLKEVAG 164
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 10/173 (5%)
Query: 841 QEYEHRQRQIEDLST-----KQEADKKELKRFLAEIDALKEKWLPTLRN-LVAQINETFS 894
+E Q I +L+T K EA ++ K+ + K +P R LV S
Sbjct: 993 EELRRSQESISELTTVLDQRKDEAIERTFKQVAKSFSEIFVKLVPAGRGELVMNRRSELS 1052
Query: 895 RNFQEMAVAGEVSLDEHESDFDKF-GILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYL 953
++ E ++ ++ +S D + GI I+V F S E L+ + SGG++S+ + +
Sbjct: 1053 QSI-EQDISMDIDTPSQKSSIDNYTGISIRVSF-NSKDDEQLNINQLSGGQKSLCALTLI 1110
Query: 954 VSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLL 1006
++Q PF ++DE + +D R +V+ S+ + C P+++
Sbjct: 1111 FAIQRCDPAPFNILDECDANLDA-QYRSAIAAMVKEMSKTSQFICTTFRPEMV 1162
>sp|Q6N1B7|SMC_RHOPA Chromosome partition protein Smc OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=smc PE=3 SV=2
Length = 1154
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 115/280 (41%), Gaps = 35/280 (12%)
Query: 23 IIEIELHNFMTF---DHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATS 79
+ + LH F +F + +PG L V+GPNG GKS+LV A+ A+G + RAT
Sbjct: 3 LTRLRLHGFKSFVEPTDFMIEPG--LTGVVGPNGCGKSNLVEALRWAMGETSHKSLRATD 60
Query: 80 IGAYVKRGEESG------YIKISLRGDTKE----------EHLTIMRKIDTRNKSEWFFN 123
+ A + G SG + ++ + D + + L I R+I+ S + N
Sbjct: 61 MDAVIFAG--SGNRPARNHAEVVMSIDNSDRTAPAALNDADTLDISRRIEREAGSVYRIN 118
Query: 124 GKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVGDPQLPVQH 183
G+ V +V + + + Q ++ E + P + E A G L H
Sbjct: 119 GREVRARDVQLLFADAATGARS-PALVHQGKIGEIIQAKPEQRRRVLEDAAGVAGL---H 174
Query: 184 CALVEKSSKLKTIECTVKRNGDTLNQLKALNVE----QEKDVERVRQRAELLEKVESMKK 239
E +LK E + R D + QL + V+ Q + R R+ A + K E+M
Sbjct: 175 ARRHEAELRLKAAETNLTRVEDVIGQL-STQVDGLKKQARQAIRFREVAAKVRKTEAMLY 233
Query: 240 KLPWLKYDMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSK 279
L W +AE AA E ++L E E S+
Sbjct: 234 HLRWRDA---QAEVGAAAEVHDLGVRQLAECTRVQAEASR 270
>sp|Q90988|SMC2_CHICK Structural maintenance of chromosomes protein 2 OS=Gallus gallus
GN=SMC2 PE=2 SV=1
Length = 1189
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 17/169 (10%)
Query: 45 LNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLR------ 98
N + G NGSGKS+++ +I LG RA+S+ V + ++G K ++
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASSLQDLVYKNGQAGVNKATVSITFDNS 86
Query: 99 -------GDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLP 151
G + +TI R++ ++++ NG V ++ + VNN +
Sbjct: 87 DKKNSPLGFENNDEITITRQVIVGGRNKYLINGMNASNNRVQDLFGSVGLNVNNPHFLIM 146
Query: 152 QDRVCEFAKLSPVKLLEETEKAVGDPQLPVQ----HCALVEKSSKLKTI 196
Q ++ + + P ++L E+A G + H + +K SKL I
Sbjct: 147 QGQITKVLNMKPTEILAMIEEAAGTRMYECKKITAHKTIEKKESKLDEI 195
>sp|O66878|SMC_AQUAE Chromosome partition protein Smc OS=Aquifex aeolicus (strain VF5)
GN=smc PE=3 SV=1
Length = 1156
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 71/133 (53%), Gaps = 12/133 (9%)
Query: 48 VIGPNGSGKSSLVCAIALALGGDTQLLGRATSIG--AYVKRGEES--GYIKISLRG---- 99
V+GPNG+GKS++ AI+ ALG + RA ++ + K G+++ Y+++ +
Sbjct: 34 VVGPNGAGKSNIGDAISFALGLSSAKALRAKNLSYLIFSKNGQKADHAYVEVHFKNLGAF 93
Query: 100 DTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFA 159
++E + I RK+ +S + NG+VV + ++ + + I + Q + +F
Sbjct: 94 PVEDEEVVISRKVSKDGRSIFKINGQVVRERDLKDFLAKAGI-YETAYNVVYQGDIVKFL 152
Query: 160 KLSPV---KLLEE 169
K++PV K++EE
Sbjct: 153 KMTPVERRKIIEE 165
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 10/173 (5%)
Query: 822 IQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPT 881
+ + I + S+ F + ++Y ++ D KQ+ K+E K I+ + K
Sbjct: 945 VTEEIQKLGSVNFRAE---EDYAEELKRFNDYKEKQQKLKEESKAIKKLIEETENKKRKV 1001
Query: 882 LRNLVAQINETFSRNFQEMAVAG--EVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHH 939
QIN++ R F ++ G ++ LD E F G+ + VK R +V
Sbjct: 1002 FLEAFNQINKSLKRIFSFLSPGGKAQMFLDNPEDPFSG-GVQLTVKPRGK---DVQYLEA 1057
Query: 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQ 992
SGGE++++ + + +LQ+ PF DE++ +D +N +K+ +L+R S+
Sbjct: 1058 MSGGEKTLAALSLIFALQEYKPSPFYYFDEVDAHLDEVNAKKV-GELIREKSK 1109
>sp|Q5N0D2|SMC_SYNP6 Chromosome partition protein Smc OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=smc PE=3 SV=2
Length = 1195
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 19/185 (10%)
Query: 835 LNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFS 894
+N L+EYE Q ++E+LS K + E L I E + R + E
Sbjct: 1003 VNMLALEEYERTQARLEELSEKLTTIEAERTELLLRI----ENFTTLRRRAFMESFEAID 1058
Query: 895 RNFQEMAVA-----GEVSLDEHESDFDK-FGILIKVKFRQSGQLEVLSAHHQSGGERSVS 948
RNFQE+ G + LD E F ++ K + +L +S GGE+S++
Sbjct: 1059 RNFQEIFAHLSDGDGSLQLDNPEDPFSSGLNLIAHPKGKPVRRLASMS-----GGEKSLT 1113
Query: 949 TILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPD 1008
+ ++ +LQ PF +DE++ +D N ++L R Q F++ P
Sbjct: 1114 ALSFIFALQRYRPSPFYALDEVDSFLDGAN----VERLARVIRQQAQAAQFIVVSHRRPM 1169
Query: 1009 LEYSE 1013
+E +E
Sbjct: 1170 IEAAE 1174
Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 23 IIEIELHNFMTFDHLICKPG-SRLNLVIGPNGSGKSSLVCAIALALG 68
I +IEL +F +F P +V GPNGSGKS+++ A+ ALG
Sbjct: 4 IKQIELSHFKSFGGTTSLPLLPEFTVVTGPNGSGKSNILDALLFALG 50
>sp|Q58718|RAD50_METJA DNA double-strand break repair Rad50 ATPase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rad50 PE=1 SV=1
Length = 1005
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 110/460 (23%), Positives = 211/460 (45%), Gaps = 65/460 (14%)
Query: 25 EIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYV 84
EI ++NF + + K + +IG NGSGKSS+ A+ AL G G + +
Sbjct: 7 EIRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALFG----AGSNFNYDTII 62
Query: 85 KRGEESGYIKISLRGDTKEEHLTIMRKIDT-RNKSEWFFNGK-------VVPKG--EVLE 134
+G++S Y+++ + + I+R+ D+ R ++ + NGK V K E+L
Sbjct: 63 TKGKKSVYVELDF--EVNGNNYKIIREYDSGRGGAKLYKNGKPYATTISAVNKAVNEILG 120
Query: 135 ITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVGDPQLPVQHC------ALVE 188
+ + N+ +N++ ++ Q + +F L P + LE K +G + + C + E
Sbjct: 121 VDR--NMFLNSI--YIKQGEIAKFLSLKPSEKLETVAKLLGIDEF--EKCYQKMGEIVKE 174
Query: 189 KSSKLKTI--ECTVKRN-----GDTLNQLKALN---VEQEKDVERVRQRAELLEKV--ES 236
+L+ I E K N + ++QL+ N +E + ++++ E +EK+ E
Sbjct: 175 YEKRLERIEGELNYKENYEKELKNKMSQLEEKNKKLMEINDKLNKIKKEFEDIEKLFNEW 234
Query: 237 MKKKLPWLKYDMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQE----KAILD 292
KKL + K+ K E A E + K L+ NT+ E + + K E K+++D
Sbjct: 235 ENKKLLYEKFINKLEERKRALELKNQELKILEYDLNTVVEARETLNRHKDEYEKYKSLVD 294
Query: 293 GDCKKLSSLINENSKRRMDFLEKVDQVGVQVQGKYKEMQELRRQEQSRQQ------RILK 346
+ +K+ S + E D+L+ Q+ + ++G ++++E + + R + K
Sbjct: 295 -EIRKIESRLRELKSHYEDYLKLTKQLEI-IKGDIEKLKEFINKSKYRDDIDNLDTLLNK 352
Query: 347 AREELAAAELDLQTVPAYEPPHDKIEKLG--SQILELGVQANQKRLQKSEKEKILNQNKL 404
++E+ E + + +++IEK+ +I E + +K L+ EK + NKL
Sbjct: 353 IKDEIERVETIKDLLEELKNLNEEIEKIEKYKRICEECKEYYEKYLELE--EKAVEYNKL 410
Query: 405 TL---------RQCSDRLKDMEDKNNKLLHALRNSGAENI 435
TL + + D+E + NKLL +N E+I
Sbjct: 411 TLEYITLLQEKKSIEKNINDLETRINKLLEETKNIDIESI 450
>sp|P32908|SMC1_YEAST Structural maintenance of chromosomes protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC1 PE=1
SV=1
Length = 1225
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 21 GNIIEIELHNFMTFDHLICKPG---SRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRA 77
G ++ +EL NF ++ + K G S +IGPNGSGKS+++ AI+ LG + L R+
Sbjct: 2 GRLVGLELSNFKSY-RGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHL-RS 59
Query: 78 TSIGAYVKRG-------------------EESGYIKISLRGDTKEEHLTIMRKIDTRNKS 118
+ + RG +S Y+K + K + +MR I +
Sbjct: 60 NILKDLIYRGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNK--LVELMRIISRNGDT 117
Query: 119 EWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVGDPQ 178
+ +GK V + + NI + + Q V + A SPV+L E+ G Q
Sbjct: 118 SYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQ 177
Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 941 SGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKM 982
SGGE++V+ + L ++ PF V+DE++ +D N +++
Sbjct: 1130 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRI 1171
>sp|O33600|RAD50_SULAC DNA double-strand break repair Rad50 ATPase OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=rad50 PE=3 SV=1
Length = 886
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 23 IIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQL-LGRATSIG 81
I EI L NF++ + K +N++IG NG+GKSS++ I L T +G+ +
Sbjct: 3 IREIRLQNFLSHEDTTVKFEGSINVIIGNNGAGKSSIIDGILFGLFKRTNRDIGKNEEL- 61
Query: 82 AYVKRGEESG--YIKISLRGDT 101
+K+G++SG IK + GDT
Sbjct: 62 --IKKGKKSGQVSIKFEINGDT 81
>sp|O95347|SMC2_HUMAN Structural maintenance of chromosomes protein 2 OS=Homo sapiens
GN=SMC2 PE=1 SV=2
Length = 1197
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 17/173 (9%)
Query: 45 LNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISL-----RG 99
N + G NGSGKS+++ +I LG RA+++ V + ++G K S+
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNGQAGITKASVSITFDNS 86
Query: 100 DTKE--------EHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLP 151
D K+ + +T+ R++ ++++ NG V ++ + VNN +
Sbjct: 87 DKKQSPLGFEVHDEITVTRQVVIGGRNKYLINGVNANNTRVQDLFCSVGLNVNNPHFLIM 146
Query: 152 QDRVCEFAKLSPVKLLEETEKAVGDPQLPVQHCA----LVEKSSKLKTIECTV 200
Q R+ + + P ++L E+A G + A + +K +KLK I+ +
Sbjct: 147 QGRITKVLNMKPPEILSMIEEAAGTRMYEYKKIAAQKTIEKKEAKLKEIKTIL 199
Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 108/259 (41%), Gaps = 18/259 (6%)
Query: 731 IVSCKWSYAEKHM-ASIEFDAKIRELEFNLKQHEKLALQASLHYEDCKKEVE--HCRKHL 787
++ K++ KH + + KI+EL+ N+ +H++ A + K+ + + +HL
Sbjct: 888 VIKAKYAEVAKHKEQNNDSQLKIKELDHNISKHKREAEDGAAKVSKMLKDYDWINAERHL 947
Query: 788 SDAKRQAESIAFITPELEKEFLEMPTTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQ 847
A P KE + ++E++ + N++ N+L E E R
Sbjct: 948 FGQPNSAYDFKTNNP---KEAGQRLQKLQEMKEKLGRNVN------MRAMNVLTEAEER- 997
Query: 848 RQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVS 907
DL K+ + + + L I+ L +K L ++N+ F F +
Sbjct: 998 --YNDLMKKKRIVENDKSKILTTIEDLDQKKNQALNIAWQKVNKDFGSIFSTLLPGANAM 1055
Query: 908 LDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVV 967
L E G+ KV + + E L+ SGG+RS+ + ++S+ P ++
Sbjct: 1056 LAPPEGQTVLDGLEFKVALGNTWK-ENLT--ELSGGQRSLVALSLILSMLLFKPAPIYIL 1112
Query: 968 DEINQGMDPINERKMFQQL 986
DE++ +D + + + Q L
Sbjct: 1113 DEVDAALDLSHTQNIGQML 1131
>sp|Q8CG48|SMC2_MOUSE Structural maintenance of chromosomes protein 2 OS=Mus musculus
GN=Smc2 PE=1 SV=2
Length = 1191
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 45 LNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLR------ 98
N + G NGSGKS+++ +I LG RA+++ V + ++G K S+
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNGQAGITKASVSITFDNS 86
Query: 99 -------GDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLP 151
G + +T+ R++ ++++ NG V ++ + VNN +
Sbjct: 87 DKKQSPLGFEAHDEITVTRQVVIGGRNKYLINGVNANNTRVQDLFCSVGLNVNNPHFLIM 146
Query: 152 QDRVCEFAKLSPVKLLEETEKAVGDPQLPVQHCA----LVEKSSKLKTIECTV 200
Q R+ + + P ++L E+A G + A + +K +KLK I+ +
Sbjct: 147 QGRITKVLNMKPPEILSMIEEAAGTRMYEYKKIAAQKTIEKKEAKLKEIKTIL 199
Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 109/259 (42%), Gaps = 18/259 (6%)
Query: 731 IVSCKWSYAEKH-MASIEFDAKIRELEFNLKQHEKLALQASLHYEDCKKEVE--HCRKHL 787
I+ K + KH + + E KI+EL+ ++ +H++ A A+ + + + KHL
Sbjct: 888 IIKDKCAEVAKHNLQNNESQLKIKELDHSISKHKREADDAAAKVSKMLSDYDWINAEKHL 947
Query: 788 SDAKRQAESIAFITPELEKEFLEMPTTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQ 847
A P KE + ++E++ + N++ N+L E E R
Sbjct: 948 FGQPNSAYDFKTNNP---KEAGQRLQKLQEVKEKLGRNVN------LRAMNVLTEAEER- 997
Query: 848 RQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVS 907
DL K+ + + + LA I+ L +K L ++N+ F F +
Sbjct: 998 --YNDLMKKKRIVENDKSKILATIEDLDQKKNQALNIAWQKVNKDFGSIFSTLLPGANAM 1055
Query: 908 LDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVV 967
L E G+ KV + + E L+ SGG+RS+ + ++S+ P ++
Sbjct: 1056 LAPPEGQTVLDGLEFKVALGNTWK-ENLT--ELSGGQRSLVALSLILSMLLFKPAPIYIL 1112
Query: 968 DEINQGMDPINERKMFQQL 986
DE++ +D + + + Q L
Sbjct: 1113 DEVDAALDLSHTQNIGQML 1131
>sp|Q14683|SMC1A_HUMAN Structural maintenance of chromosomes protein 1A OS=Homo sapiens
GN=SMC1A PE=1 SV=2
Length = 1233
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Query: 26 IELHNFMTF-DHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSI---- 80
IE+ NF ++ I P R +IGPNGSGKS+L+ AI+ LG T L R ++
Sbjct: 7 IEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNL-RVKTLRDLI 65
Query: 81 -GAYVKRGEESGYIKISLRGDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRF 139
GA V + + + + E T R I SE+ N KVV E E ++
Sbjct: 66 HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVI-VGGSSEYKINNKVVQLHEYSEELEKL 124
Query: 140 NIQVNNLTQFLPQDRVCEFAKLSP 163
I + + Q V A +P
Sbjct: 125 GILIKARNFLVFQGAVESIAMKNP 148
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 941 SGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPIN 978
SGGE++V+ + L ++ PF V+DEI+ +D N
Sbjct: 1129 SGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTN 1166
>sp|Q9CU62|SMC1A_MOUSE Structural maintenance of chromosomes protein 1A OS=Mus musculus
GN=Smc1a PE=1 SV=4
Length = 1233
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Query: 26 IELHNFMTF-DHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSI---- 80
IE+ NF ++ I P R +IGPNGSGKS+L+ AI+ LG T L R ++
Sbjct: 7 IEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNL-RVKTLRDLI 65
Query: 81 -GAYVKRGEESGYIKISLRGDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRF 139
GA V + + + + E T R I SE+ N KVV E E ++
Sbjct: 66 HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVI-VGGSSEYKINNKVVQLHEYSEELEKL 124
Query: 140 NIQVNNLTQFLPQDRVCEFAKLSP 163
I + + Q V A +P
Sbjct: 125 GILIKARNFLVFQGAVESIAMKNP 148
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 941 SGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPIN 978
SGGE++V+ + L ++ PF V+DEI+ +D N
Sbjct: 1129 SGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTN 1166
>sp|Q9Z1M9|SMC1A_RAT Structural maintenance of chromosomes protein 1A OS=Rattus
norvegicus GN=Smc1a PE=1 SV=1
Length = 1233
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Query: 26 IELHNFMTF-DHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSI---- 80
IE+ NF ++ I P R +IGPNGSGKS+L+ AI+ LG T L R ++
Sbjct: 7 IEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNL-RVKTLRDLI 65
Query: 81 -GAYVKRGEESGYIKISLRGDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRF 139
GA V + + + + E T R I SE+ N KVV E E ++
Sbjct: 66 HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVI-VGGSSEYKINNKVVQLHEYSEELEKL 124
Query: 140 NIQVNNLTQFLPQDRVCEFAKLSP 163
I + + Q V A +P
Sbjct: 125 GILIKARNFLVFQGAVESIAMKNP 148
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 941 SGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPIN 978
SGGE++V+ + L ++ PF V+DEI+ +D N
Sbjct: 1129 SGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTN 1166
>sp|O97593|SMC1A_BOVIN Structural maintenance of chromosomes protein 1A OS=Bos taurus
GN=SMC1A PE=1 SV=1
Length = 1233
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Query: 26 IELHNFMTF-DHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSI---- 80
IE+ NF ++ I P R +IGPNGSGKS+L+ AI+ LG T L R ++
Sbjct: 7 IEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNL-RVKTLRDLI 65
Query: 81 -GAYVKRGEESGYIKISLRGDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRF 139
GA V + + + + E T R I SE+ N KVV E E ++
Sbjct: 66 HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVI-VGGSSEYKINNKVVQLHEYSEELEKL 124
Query: 140 NIQVNNLTQFLPQDRVCEFAKLSP 163
I + + Q V A +P
Sbjct: 125 GILIKARNFLVFQGAVESIAMKNP 148
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 941 SGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPIN 978
SGGE++V+ + L ++ PF V+DEI+ +D N
Sbjct: 1129 SGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTN 1166
>sp|P50533|SMC2_XENLA Structural maintenance of chromosomes protein 2 OS=Xenopus laevis
GN=smc2 PE=1 SV=1
Length = 1203
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 45 LNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLR------ 98
N + G NGSGKS+++ +I LG RA+++ V + ++G K ++
Sbjct: 27 FNAITGLNGSGKSNILDSICFLLGISNLTQVRASNLQDLVYKNGQAGITKATVSITFDNY 86
Query: 99 -------GDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLP 151
G + +T+ R++ ++++ NG V ++ + VNN +
Sbjct: 87 DKKQSPLGFEAHDEITVTRQVVIGGRNKYLINGVNANNTRVQDLFCSVGLNVNNPHFLIM 146
Query: 152 QDRVCEFAKLSPVKLLEETEKAVGDPQLPVQHCA----LVEKSSKLKTIECTV 200
Q R+ + + P ++L E+A G + A + +K +KLK I+ +
Sbjct: 147 QGRITKVLNMKPPEILAMIEEAAGTRMYECKKIAAQKTIEKKEAKLKEIQTIL 199
>sp|O93309|SMC3_XENLA Structural maintenance of chromosomes protein 3 OS=Xenopus laevis
GN=smc3 PE=1 SV=2
Length = 1209
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 91/414 (21%), Positives = 183/414 (44%), Gaps = 79/414 (19%)
Query: 643 SMQTEQRL--IEDEAAKLQKEREEIIN-IVQIEKRKRREMENHIN--LRKRKLESIEKE- 696
S++ ++R+ + DE +LQ+E +++N +++E R +E ++N LRKR L+ +E+E
Sbjct: 790 SLEDQKRVDALNDEIRQLQQENRQLLNERIKLEGTITR-VETYLNENLRKR-LDQVEQEL 847
Query: 697 -------------------DDINTALAKLVDQAADLNIQQFKYAIEIKNLLVEIVSCKWS 737
+ IN + + ++ L+I K +E K+L+ + +W
Sbjct: 848 NELRETEGGTVLTATTSELEAINKRVKDTLARSEGLDITIDKTEVESKDLVKSM--DRWK 905
Query: 738 YAEK-HMASIEFDAKIRELEFNLKQHEKLALQASLHYEDCKKEVEHCRKHLSDAKRQAES 796
EK HM +I D K ELE + + + L+ E+C K++ +A + ++
Sbjct: 906 NMEKDHMDAINHDTK--ELE-KMTNRQGMLLKKK---EECMKKIRELGSLPQEAFEKYQT 959
Query: 797 IAFITPELEKEFLEMPTTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTK 856
++ L++ F ++ EL+ +N+ L ++ + Q E L +
Sbjct: 960 LS-----LKQLFRKLEQCNTELK-----------KYSHVNKKALDQFVNFSEQKEKLIKR 1003
Query: 857 QEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSL-------- 908
QE + K + ++ L+ + ++ Q+++ FS FQ++ G+ +L
Sbjct: 1004 QEELDRGHKSIMELMNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVE 1063
Query: 909 -----DEHESD-------FDKF-GILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVS 955
DE E D+F G+ I+V F Q E+ SGG++S+ + + +
Sbjct: 1064 GSQSQDEGEGSTQSSVPSVDQFTGVGIRVSF-TGKQAEMREMQQLSGGQKSLVALALIFA 1122
Query: 956 LQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDL 1009
+Q PF + DEI+Q +D + + + ++ AS +T P+L
Sbjct: 1123 IQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELASHAQ-----FITTTFRPEL 1171
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/377 (21%), Positives = 160/377 (42%), Gaps = 55/377 (14%)
Query: 23 IIEIELHNFMTF-DHLICKP-GSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSI 80
I ++ + F ++ D I P S+ N+++G NGSGKS+ AI L + L R
Sbjct: 3 IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHL-RPEQR 61
Query: 81 GAYVKRGEE----SGYIKISLRGDTKEEHLTI------MRKIDTRNKSEWFFNGKVVPKG 130
A + G S +++I D + L I +R++ K ++F + K+V K
Sbjct: 62 LALLHEGTGPRVISAFVEIIF--DNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKN 119
Query: 131 EVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSP----VKLLEETEKAVGDPQLPVQHCAL 186
+V+ + + +N + Q ++ + A +P +KLL E + + +L
Sbjct: 120 DVMNLLESAGFSRSNPYYIVKQGKINQMA-TAPDSQRLKLLREVAGTRVYDERKEESISL 178
Query: 187 VEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKY 246
++ E KR D +N+L E+ +E ++ +K + M++ L + Y
Sbjct: 179 MK--------ETEGKR--DKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIY 228
Query: 247 DMKKAEYIAA------------------KEQEKDAKKKLDEAANTLHEFSKPIEGKKQEK 288
+ + E A ++ ++DA+ K++E + E I K+EK
Sbjct: 229 NQELNETRAKLDELSSKRETSGEKSRQLRDAQQDARDKMEEIERQVRELKSKISAMKEEK 288
Query: 289 AILDGDCKKLSSLINENSKRRMDFLEKVDQVGVQVQGKYKEMQELRRQEQSRQQRILKAR 348
++LSS E K+R K + ++ G ++ + L ++ Q ++I + +
Sbjct: 289 -------EQLSSERQEQIKQRTKLELKTKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQ 341
Query: 349 EELAAAELDLQTVPAYE 365
+ELA E +V E
Sbjct: 342 KELAETEPKFSSVKQKE 358
>sp|Q9HK21|SMC_THEAC Chromosome partition protein Smc OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=smc PE=3 SV=1
Length = 1140
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 10/150 (6%)
Query: 19 MPGNIIEIELHNFMTFDHL-ICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRA 77
M I IE HNF +F + LN++ GPNGSGKS++ + LG + RA
Sbjct: 1 MSSYIERIEAHNFKSFRRKKVINFTKGLNVISGPNGSGKSNIGDMLLFVLGTKSIHAVRA 60
Query: 78 TSIGAYVKRGEESG---YIKISLRGDTKEEHLTIMRK--IDTRNKSEWFFNGKVVPKGEV 132
+ V +G SG + ++ R D L I R+ I+ KS ++ NG E+
Sbjct: 61 DRLSDLVSKG--SGNECSVSVTFRSDDG-RSLVIERRLVIEDEPKSYYYVNGVRSRLSEI 117
Query: 133 LEITKRFNIQVNNLTQFLPQDRVCEFAKLS 162
E I + F+ Q + +F S
Sbjct: 118 DETLASMGINFGTYS-FVLQGDINDFISYS 146
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 88/416 (21%), Positives = 175/416 (42%), Gaps = 69/416 (16%)
Query: 627 KKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRRE-------- 678
KK+ E S +EL++ + + + R I D+ ++ E E++I ++ K +E
Sbjct: 706 KKEAERSREELKQVMDDISSTDRAIADKK-RMIDENEKVIEQKTLDLHKYQEALNDLYDR 764
Query: 679 -----------MENHINLRKRKLESIEKE--------DDINTALAKLVDQAADLNIQQFK 719
+ N IN + +++++ E D +++ L DQ D +Q+
Sbjct: 765 IDPEFFKNIGDLSNEINEVRSEIDAVASELNQITSRRDILSSERKHLEDQMIDTKLQENS 824
Query: 720 YAIEIKNL-----LVEIVSCKWSYA----EKHMASI-----EFDAKIRELEFNLKQHE-K 764
A EI +L +E + K+ YA E ++ E D +IRE+E + +
Sbjct: 825 IAAEIDDLNGKKRELEEKAKKYQYALNDLEGRYGNLSAQVREADKQIREMENGINDAKAS 884
Query: 765 LALQASLHYEDCKKEVEHCRKHLSDAKRQAESIAFITPELEKEFLEMPTTIEELEAAIQD 824
+ L+ L D K + +LS +R+ S + E ++ +E+E AI D
Sbjct: 885 IDLKNDLM-NDLKVKAGILEGNLSSIERELSSYSG----CEAVIGDLQAMRQEIERAIMD 939
Query: 825 NISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDAL-----KEKWL 879
+ +N Q+YE + ++D K E +E K+ L E A+ +E ++
Sbjct: 940 -------LGEINNAAPQQYEDALKDLDDYEKKHEKLMEE-KKALEETTAMLNEKKREVFV 991
Query: 880 PTLRNLVAQINETFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHH 939
T ++ ++N + + G L SD + + V + +++
Sbjct: 992 KTFTDISEKMNYVYG-----IINGGTAKLIMIGSDPLTSSVEVSVTPKDKATVKI---QA 1043
Query: 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNT 995
SGGE+SV+ + ++ ++Q L +DE++ +D N M + + + A + T
Sbjct: 1044 LSGGEKSVAALSFITAVQILMPSSIYFLDEVDMYLDAYNAENMIKMISQNAGEAQT 1099
>sp|Q8IED2|SMC2_PLAF7 Structural maintenance of chromosomes protein 2 OS=Plasmodium
falciparum (isolate 3D7) GN=MAL13P1.96 PE=3 SV=1
Length = 1218
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 115/263 (43%), Gaps = 24/263 (9%)
Query: 44 RLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIK--ISLRGDT 101
+ N + G NGSGKS+++ AI +G + L R + + + ++G K ++++ +
Sbjct: 26 QFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVNRLDELIYKQGQAGITKGSVTIKFNN 85
Query: 102 KEE------------HLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQF 149
+E+ ++TI R+I ++ + N ++ + + + +NN
Sbjct: 86 EEKPSPLQEPYRDMKNITITRQIVLGGRNRYLLNSHNAKPKDISDFFQSLKLNINNPHFL 145
Query: 150 LPQDRVCEFAKLSPVKLLEETEKAVGDPQLPVQHCA----LVEKSSKLKTIECTVKRNGD 205
+ Q ++ + + P++LL E++ G V+ +V+K KL I N
Sbjct: 146 IMQGKITKVINMKPIELLGLIEESSGTKLYEVKRTNAIKLMVKKDQKLGEI------NKV 199
Query: 206 TLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKKAEYIAAKEQEKDAKK 265
+++ V+ +K+ E + E++E +K KY + K +E+ +DAK
Sbjct: 200 LFEEIEPTLVKLKKEKEEYNKFVSNNEEIEKYEKVEIAYKYYVAKKMMTKCEEKIEDAKS 259
Query: 266 KLDEAANTLHEFSKPIEGKKQEK 288
+ + E K IE K EK
Sbjct: 260 EEKILEKGIKEIDKDIEKYKIEK 282
Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 97/434 (22%), Positives = 192/434 (44%), Gaps = 65/434 (14%)
Query: 588 RWSISRYGGHVSASVEP----VNQSRLLLCSVDGNEIERLRSKKKKLEESVDELEESLKS 643
R S+YG V+ +E +++ R NE+ L ++KKL E + +LE+ +
Sbjct: 749 RMETSKYGS-VNKKIEEHKNEIDKGR--------NELSELYKEQKKLTEVIRKLEKDISE 799
Query: 644 MQTEQ-RLIEDEAAKLQKEREEIINIVQIEKRKRR-------EMENHINLRKRKLESIEK 695
+ + + ED ++K + +I + E +K+ ++EN+ ++++ +
Sbjct: 800 YEANKDKKEEDLKETIKKLKNKIKQLETEEHKKKEEIDDVLLQIENYKKQKEKETNDLSS 859
Query: 696 EDD-INTALAKLVDQAADLNIQQFKYAIEIKNLLVEIVSCKWSYAEKHMASIEFDAKIRE 754
D+ IN K+ D ++NI + E++N + E+ S SY E
Sbjct: 860 TDEIINEIEKKIEDIEKNINITKENLK-ELENKITELQSSFSSYE-------------NE 905
Query: 755 LEFNLKQHEKLALQASLHYEDCKKEVEHCRKHLSDAKRQAESIAFIT----------PEL 804
++ +K+ E L + S + D KK D K ++++ ++ P
Sbjct: 906 MKHVVKKIEDLEKKKSENILDLKKLENTLLDLQKDLKTSSDTVKYLYKTHVWIESYEPLF 965
Query: 805 EKEFLEMPTTIEE-----LEAAIQDNISQANSIFF-LNQNILQEYEHRQRQIEDLSTKQ- 857
K++ P E ++ IQ ++ N + +N+ +Q YE Q +DL TK+
Sbjct: 966 NKKY--TPYDFENFRHDVIQKKIQALQNEQNKLSININRKAVQMYEQVQVDYKDLVTKKS 1023
Query: 858 --EADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLDEHESDF 915
E DKK+++ +A++D K + +L + QINE F F + + L + D
Sbjct: 1024 QVEEDKKKIQEVIADLDVKKSE---SLLAMYQQINEYFQAIFSTLLNNAQAKLSIVDGDL 1080
Query: 916 DKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMD 975
GI +K+ F + + S SGG+RS+ + +++L + P ++DEI+ +D
Sbjct: 1081 AN-GIEMKIAFNNNWK---ESLTELSGGQRSLLALSLILALLKVRTVPMYILDEIDAALD 1136
Query: 976 PINERKMFQQLVRA 989
+N + ++R
Sbjct: 1137 -LNHTQNIGDMIRT 1149
>sp|P62135|RAD50_NANEQ DNA double-strand break repair Rad50 ATPase OS=Nanoarchaeum
equitans (strain Kin4-M) GN=rad50 PE=3 SV=1
Length = 786
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 7/59 (11%)
Query: 45 LNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISL--RGDT 101
+NL++GPNGSGK++LV +I LAL G G + Y K+GE++ I + L +G T
Sbjct: 26 INLILGPNGSGKTTLVESIFLALFG-----GDFARVIDYFKKGEKTMAITLILEDKGKT 79
>sp|Q8I1U7|SMC3_PLAF7 Structural maintenance of chromosomes protein 3 homolog
OS=Plasmodium falciparum (isolate 3D7) GN=PFD0685c PE=3
SV=1
Length = 1193
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 79/163 (48%), Gaps = 16/163 (9%)
Query: 23 IIEIELHNFMTFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALALGG--DTQLLGRATS 79
I +I L F T+ + +R +N ++G NGSGKS+++ AI L + + +
Sbjct: 3 IKQIRLKGFRTYKNETTIDFTRGINCIVGFNGSGKSNILLAIEFILSDVCEYKQIYLHEG 62
Query: 80 IGAYVKRGEESGYIKISLRGDTKEEHLTI-------MRKIDTRNKSEWFFNGKVVPKGEV 132
IG V+ + Y++I D E++ ++ ++K+ K E F N K + K +
Sbjct: 63 IGNAVR----NCYVEIIF--DNSEKYFSMFKESEIKIKKVLENMKCEIFVNDKNISKNQY 116
Query: 133 LEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175
+E+ + + +NNL + Q ++ + + + ++L + +G
Sbjct: 117 VELLESCGLCINNLYNIIKQGQIIKLSNMKDEEILNYLKSILG 159
Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 941 SGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFL 1000
SGGERS+ I + L + N F DEI+ +D I+ R L++ + T F+
Sbjct: 1088 SGGERSIVAICLFLCLNKIDNFSFFFFDEIDAALDTIH-RDNLSLLLKELAHRGTQ--FI 1144
Query: 1001 LTPKLLPDLEYSEACSILNIMNG-PWIEQPSK 1031
+T LEYS+ I+ I++ +I + +K
Sbjct: 1145 ITTFRKELLEYSDNMYIVKIVDRESYISKGTK 1176
>sp|Q9HLR8|RAD50_THEAC DNA double-strand break repair Rad50 ATPase OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=rad50 PE=3 SV=1
Length = 896
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 23 IIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGA 82
I I L NF++ + + +N+++G NG+GKSS++ AI AL GD R I
Sbjct: 3 IDRIRLINFLSHEDSEIFFDTGVNIIVGHNGAGKSSIIDAIRFALFGDK----RTKKIED 58
Query: 83 YVKRGEESGYIKISLRGDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVL 133
+++G +S +++ R H I+R+ TR N ++ G L
Sbjct: 59 MIRKGAKSLEVEMEFRHGG---HTYIIRRSITRRSKNPESNAMIMVDGSAL 106
>sp|Q00737|SUDA_EMENI Chromosome segregation protein sudA OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=sudA PE=2 SV=3
Length = 1215
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 13/150 (8%)
Query: 23 IIEIELHNFMTF-DHLICKPGS-RLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSI 80
+ +I + F ++ D + +P S + N+++G NGSGKS+ AI L LGR
Sbjct: 3 VKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLGREER- 61
Query: 81 GAYVKRGEE----SGYIKISL-----RGDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGE 131
A + G S Y++I R T + L + R I + K E+ + K K +
Sbjct: 62 QALLHEGSGSAVMSAYVEIIFDNSDERFPTGKPELVLRRTIGLK-KDEYTLDRKNATKND 120
Query: 132 VLEITKRFNIQVNNLTQFLPQDRVCEFAKL 161
V+ + + +N +PQ RV +
Sbjct: 121 VMNLLESAGFSRSNPYYIVPQGRVTALTNM 150
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 10/173 (5%)
Query: 841 QEYEHRQRQIEDLST-----KQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSR 895
+E + Q+ I+DL + K EA ++ K+ E + EK +P R + I R
Sbjct: 1011 EELDASQKSIDDLISVLDHRKDEAIERTFKQVSREFATIFEKLVPAGRGRLI-IQRKTDR 1069
Query: 896 NFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVS 955
+ + S + G+ I V F S + SGG++S+ + + +
Sbjct: 1070 TQRAEDDLESEDEEAKHSVENYVGVGISVSF-NSKHDDQQRIQQLSGGQKSLCALALVFA 1128
Query: 956 LQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQ--CFLLTPKLL 1006
+Q PF + DEI+ +D R Q+++ S Q C P++L
Sbjct: 1129 IQACDPAPFYLFDEIDANLDA-QYRTAVAQMLKTISDSTNGQFICTTFRPEML 1180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,137,435
Number of Sequences: 539616
Number of extensions: 16662760
Number of successful extensions: 118032
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 2570
Number of HSP's that attempted gapping in prelim test: 95045
Number of HSP's gapped (non-prelim): 17363
length of query: 1051
length of database: 191,569,459
effective HSP length: 128
effective length of query: 923
effective length of database: 122,498,611
effective search space: 113066217953
effective search space used: 113066217953
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 67 (30.4 bits)