Query 001573
Match_columns 1051
No_of_seqs 371 out of 2462
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 04:10:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0979 Structural maintenance 100.0 4E-118 9E-123 960.9 108.0 1022 7-1040 6-1062(1072)
2 COG1196 Smc Chromosome segrega 100.0 2.7E-98 6E-103 917.1 107.0 956 21-1005 1-1129(1163)
3 KOG0250 DNA repair protein RAD 100.0 3.1E-93 6.8E-98 781.9 91.4 979 20-1025 39-1073(1074)
4 KOG0933 Structural maintenance 100.0 1.1E-83 2.5E-88 689.9 94.4 966 21-1023 1-1171(1174)
5 KOG0964 Structural maintenance 100.0 4.7E-82 1E-86 673.7 91.2 964 21-1020 1-1183(1200)
6 TIGR02169 SMC_prok_A chromosom 100.0 1.8E-76 4E-81 755.7 106.7 948 22-1005 1-1137(1164)
7 KOG0996 Structural maintenance 100.0 8.7E-76 1.9E-80 641.1 93.0 982 17-1025 80-1286(1293)
8 KOG0018 Structural maintenance 100.0 2.1E-73 4.6E-78 618.4 86.3 943 20-1005 1-1112(1141)
9 TIGR02168 SMC_prok_B chromosom 100.0 1.1E-64 2.5E-69 650.8 108.6 953 22-1005 1-1152(1179)
10 PRK02224 chromosome segregatio 100.0 6.7E-49 1.5E-53 479.0 91.2 161 21-186 1-171 (880)
11 PRK03918 chromosome segregatio 100.0 1.4E-45 3E-50 451.9 95.9 166 21-190 1-171 (880)
12 PRK01156 chromosome segregatio 100.0 2.6E-43 5.7E-48 428.6 94.3 197 21-223 1-208 (895)
13 COG0419 SbcC ATPase involved i 100.0 3.3E-40 7.2E-45 397.0 91.4 161 21-184 1-174 (908)
14 TIGR00606 rad50 rad50. This fa 100.0 1.1E-36 2.4E-41 379.3 82.1 164 22-190 2-195 (1311)
15 PRK04863 mukB cell division pr 100.0 7.7E-33 1.7E-37 334.2 94.5 286 19-306 3-410 (1486)
16 PRK10246 exonuclease subunit S 100.0 1.2E-32 2.7E-37 333.2 94.7 164 21-186 1-189 (1047)
17 TIGR00618 sbcc exonuclease Sbc 100.0 2.3E-32 5E-37 334.7 92.5 164 21-186 1-185 (1042)
18 COG4717 Uncharacterized conser 100.0 3.6E-31 7.9E-36 283.1 76.5 187 813-1018 788-982 (984)
19 PF13514 AAA_27: AAA domain 100.0 6.2E-30 1.3E-34 314.8 80.6 189 813-1019 910-1110(1111)
20 TIGR02680 conserved hypothetic 100.0 1E-25 2.3E-30 278.0 103.5 86 937-1027 1245-1338(1353)
21 PRK10869 recombination and rep 100.0 1.3E-30 2.7E-35 291.2 54.2 184 22-225 1-198 (553)
22 COG0497 RecN ATPase involved i 100.0 6.6E-27 1.4E-31 248.0 53.5 188 813-1004 297-493 (557)
23 KOG0962 DNA repair protein RAD 100.0 2E-23 4.2E-28 238.4 82.3 164 20-188 1-192 (1294)
24 PF02463 SMC_N: RecF/RecN/SMC 100.0 1.1E-29 2.5E-34 255.3 22.3 123 22-144 1-135 (220)
25 PHA02562 46 endonuclease subun 100.0 1.4E-27 3E-32 277.7 42.0 263 20-305 1-274 (562)
26 TIGR03185 DNA_S_dndD DNA sulfu 100.0 1.1E-24 2.3E-29 252.7 63.5 157 21-178 1-183 (650)
27 COG4913 Uncharacterized protei 100.0 1.5E-21 3.3E-26 204.3 68.0 151 21-175 15-209 (1104)
28 TIGR00634 recN DNA repair prot 100.0 4.6E-25 9.9E-30 250.7 39.0 186 22-227 1-204 (563)
29 KOG0250 DNA repair protein RAD 99.9 5.6E-18 1.2E-22 189.4 60.6 583 164-767 184-800 (1074)
30 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.6E-22 3.6E-27 206.6 15.7 142 21-162 1-157 (251)
31 TIGR02168 SMC_prok_B chromosom 99.9 4.7E-17 1E-21 210.1 66.1 168 192-359 166-333 (1179)
32 COG1196 Smc Chromosome segrega 99.9 7.4E-17 1.6E-21 199.7 63.5 669 179-878 160-914 (1163)
33 KOG0996 Structural maintenance 99.9 2E-16 4.3E-21 176.5 56.0 192 528-720 615-877 (1293)
34 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.9E-21 6.3E-26 196.3 14.8 139 23-164 1-146 (247)
35 cd03242 ABC_RecF RecF is a rec 99.8 2.2E-20 4.8E-25 192.2 16.2 139 23-175 1-139 (270)
36 PRK00064 recF recombination pr 99.8 9.5E-20 2E-24 194.5 20.0 140 21-175 1-141 (361)
37 cd03241 ABC_RecN RecN ATPase i 99.8 3.4E-20 7.3E-25 191.5 14.6 133 23-172 1-147 (276)
38 PRK14079 recF recombination pr 99.8 3.3E-19 7.2E-24 189.0 21.7 138 21-175 1-138 (349)
39 PF12128 DUF3584: Protein of u 99.8 2.9E-12 6.2E-17 159.2 82.1 59 940-1004 1121-1184(1201)
40 cd03277 ABC_SMC5_euk Eukaryoti 99.8 6.1E-20 1.3E-24 180.0 11.1 111 21-168 1-111 (213)
41 TIGR00634 recN DNA repair prot 99.8 8.4E-17 1.8E-21 183.4 37.0 191 811-1005 299-503 (563)
42 KOG0964 Structural maintenance 99.8 1E-13 2.3E-18 151.5 55.5 197 187-383 166-370 (1200)
43 TIGR02169 SMC_prok_A chromosom 99.8 3E-13 6.5E-18 174.1 64.5 165 192-356 164-336 (1164)
44 cd03272 ABC_SMC3_euk Eukaryoti 99.8 3.7E-18 8E-23 174.8 14.1 138 23-162 1-149 (243)
45 COG1195 RecF Recombinational D 99.7 1.2E-16 2.5E-21 162.7 20.2 141 21-175 1-141 (363)
46 TIGR00611 recf recF protein. A 99.7 7.9E-17 1.7E-21 171.2 19.7 142 21-175 1-142 (365)
47 PHA02562 46 endonuclease subun 99.7 1.4E-13 2.9E-18 160.7 39.8 175 815-1005 353-537 (562)
48 cd03239 ABC_SMC_head The struc 99.7 4.1E-17 8.8E-22 154.9 8.3 77 23-99 1-81 (178)
49 COG3096 MukB Uncharacterized p 99.7 7.9E-09 1.7E-13 110.3 67.0 49 19-67 3-51 (1480)
50 PF13555 AAA_29: P-loop contai 99.7 1.8E-16 3.8E-21 115.4 5.8 49 23-71 1-51 (62)
51 KOG0933 Structural maintenance 99.6 1.8E-09 3.9E-14 119.8 61.4 164 197-360 175-354 (1174)
52 cd03276 ABC_SMC6_euk Eukaryoti 99.6 8.8E-16 1.9E-20 149.1 8.8 79 23-101 1-79 (198)
53 PF13476 AAA_23: AAA domain; P 99.6 1.1E-15 2.5E-20 153.0 9.4 75 25-99 1-81 (202)
54 PRK02224 chromosome segregatio 99.6 5.3E-09 1.1E-13 129.0 68.1 152 841-1005 691-854 (880)
55 cd03240 ABC_Rad50 The catalyti 99.5 1.6E-14 3.5E-19 141.3 10.2 91 23-114 1-93 (204)
56 cd03279 ABC_sbcCD SbcCD and ot 99.5 2.4E-14 5.3E-19 142.1 9.1 90 21-112 1-95 (213)
57 KOG0161 Myosin class II heavy 99.5 3.3E-07 7.1E-12 113.5 70.0 16 59-74 690-705 (1930)
58 KOG0018 Structural maintenance 99.5 1.9E-08 4.2E-13 113.1 53.4 136 181-316 150-285 (1141)
59 KOG0979 Structural maintenance 99.5 9.7E-09 2.1E-13 114.8 50.4 206 155-360 140-350 (1072)
60 KOG0161 Myosin class II heavy 99.4 3.5E-06 7.6E-11 104.7 69.9 51 370-420 1063-1113(1930)
61 cd03278 ABC_SMC_barmotin Barmo 99.4 1E-12 2.2E-17 127.6 8.0 78 23-100 1-85 (197)
62 PRK03918 chromosome segregatio 99.3 2.3E-05 5E-10 97.4 68.6 114 883-1005 739-854 (880)
63 cd03277 ABC_SMC5_euk Eukaryoti 99.3 1.9E-11 4.1E-16 120.2 10.4 107 920-1026 107-213 (213)
64 cd03274 ABC_SMC4_euk Eukaryoti 99.3 1.1E-11 2.4E-16 121.9 7.9 78 21-99 1-85 (212)
65 PRK04863 mukB cell division pr 99.2 4.5E-05 9.8E-10 95.1 68.0 144 161-310 276-421 (1486)
66 PRK04778 septation ring format 99.2 1.5E-05 3.3E-10 91.4 55.1 174 703-896 350-526 (569)
67 COG3950 Predicted ATP-binding 99.2 5E-10 1.1E-14 109.8 14.3 51 21-71 1-52 (440)
68 TIGR00606 rad50 rad50. This fa 99.2 0.00013 2.9E-09 93.1 65.9 181 814-1005 1076-1270(1311)
69 PF12128 DUF3584: Protein of u 99.1 8.1E-05 1.7E-09 93.7 61.8 36 38-74 13-48 (1201)
70 cd03227 ABC_Class2 ABC-type Cl 99.0 2.7E-10 5.9E-15 107.4 6.0 68 26-97 2-71 (162)
71 PF13166 AAA_13: AAA domain 98.9 1.2E-06 2.7E-11 105.5 31.7 146 845-1005 421-571 (712)
72 PRK01156 chromosome segregatio 98.9 0.00088 1.9E-08 83.1 68.2 71 935-1005 797-870 (895)
73 PF11398 DUF2813: Protein of u 98.8 1.2E-08 2.6E-13 106.6 8.8 61 21-84 1-61 (373)
74 cd03276 ABC_SMC6_euk Eukaryoti 98.8 2.3E-08 5.1E-13 97.3 10.3 91 936-1027 106-196 (198)
75 KOG4674 Uncharacterized conser 98.8 0.0018 3.9E-08 80.0 61.8 60 334-395 964-1023(1822)
76 PF04310 MukB: MukB N-terminal 98.7 1.4E-07 3E-12 85.7 9.4 89 20-110 4-105 (227)
77 PF10174 Cast: RIM-binding pro 98.6 0.0029 6.3E-08 73.3 59.8 44 843-886 673-716 (775)
78 COG3593 Predicted ATP-dependen 98.6 3.3E-08 7.2E-13 108.2 5.6 63 21-85 1-63 (581)
79 PF00261 Tropomyosin: Tropomyo 98.6 7.6E-05 1.7E-09 74.8 28.7 36 623-658 6-41 (237)
80 PF00261 Tropomyosin: Tropomyo 98.6 0.0002 4.3E-09 71.9 31.6 37 189-225 6-42 (237)
81 COG1106 Predicted ATPases [Gen 98.6 2.8E-08 6E-13 103.0 4.0 50 22-72 1-51 (371)
82 cd03239 ABC_SMC_head The struc 98.5 2.6E-07 5.5E-12 88.1 8.1 64 940-1005 95-158 (178)
83 PF13175 AAA_15: AAA ATPase do 98.5 7.3E-08 1.6E-12 108.8 5.2 70 934-1004 336-411 (415)
84 cd03278 ABC_SMC_barmotin Barmo 98.5 2.4E-07 5.1E-12 90.3 7.1 75 936-1014 110-184 (197)
85 COG4637 Predicted ATPase [Gene 98.5 6.7E-08 1.4E-12 94.4 2.6 46 21-67 1-46 (373)
86 PF13166 AAA_13: AAA domain 98.5 0.00032 7E-09 84.8 34.8 42 30-71 1-44 (712)
87 TIGR00611 recf recF protein. A 98.5 1E-05 2.2E-10 86.8 19.3 147 864-1020 179-358 (365)
88 COG5293 Predicted ATPase [Gene 98.4 0.0037 8E-08 64.5 35.5 35 38-72 20-65 (591)
89 COG3910 Predicted ATPase [Gene 98.4 2.3E-07 5.1E-12 83.3 4.1 39 38-76 32-70 (233)
90 COG1126 GlnQ ABC-type polar am 98.4 6.6E-07 1.4E-11 83.1 6.9 63 937-1005 134-196 (240)
91 cd03275 ABC_SMC1_euk Eukaryoti 98.3 7.7E-07 1.7E-11 90.8 7.0 76 937-1015 153-228 (247)
92 KOG4674 Uncharacterized conser 98.3 0.026 5.6E-07 70.3 70.9 30 845-874 841-870 (1822)
93 cd00267 ABC_ATPase ABC (ATP-bi 98.3 1.4E-06 2.9E-11 82.2 7.2 60 940-1005 81-140 (157)
94 KOG0994 Extracellular matrix g 98.3 0.0019 4.1E-08 74.1 32.0 61 367-427 1687-1747(1758)
95 cd03273 ABC_SMC2_euk Eukaryoti 98.3 1.6E-06 3.4E-11 89.0 7.4 65 937-1004 164-228 (251)
96 cd03241 ABC_RecN RecN ATPase i 98.3 3.1E-06 6.8E-11 87.8 9.3 80 922-1005 154-233 (276)
97 PF07888 CALCOCO1: Calcium bin 98.3 0.013 2.8E-07 64.1 37.0 15 960-974 498-512 (546)
98 COG3840 ThiQ ABC-type thiamine 98.3 2.3E-06 5E-11 76.7 6.7 63 937-1004 127-189 (231)
99 COG1121 ZnuC ABC-type Mn/Zn tr 98.2 2.3E-06 5.1E-11 83.7 7.4 73 936-1014 136-208 (254)
100 cd03227 ABC_Class2 ABC-type Cl 98.2 3.2E-06 6.8E-11 79.8 8.2 65 939-1005 77-141 (162)
101 PRK00064 recF recombination pr 98.2 3.8E-05 8.2E-10 82.8 17.4 132 864-1005 173-339 (361)
102 COG4604 CeuD ABC-type enteroch 98.2 1E-06 2.2E-11 80.1 4.1 34 36-69 19-53 (252)
103 COG4987 CydC ABC-type transpor 98.2 3.5E-06 7.5E-11 89.5 8.1 79 940-1028 475-553 (573)
104 cd03240 ABC_Rad50 The catalyti 98.2 3.2E-06 7E-11 83.0 7.5 68 937-1005 113-183 (204)
105 cd03272 ABC_SMC3_euk Eukaryoti 98.2 3.2E-06 6.9E-11 86.7 7.8 83 937-1023 156-238 (243)
106 COG1122 CbiO ABC-type cobalt t 98.2 1.6E-06 3.5E-11 85.6 5.1 66 935-1005 134-199 (235)
107 PF01576 Myosin_tail_1: Myosin 98.2 3E-07 6.4E-12 109.6 0.0 38 622-659 458-495 (859)
108 PF13558 SbcCD_C: Putative exo 98.2 1.4E-06 2.9E-11 71.8 3.8 52 936-987 29-89 (90)
109 cd03231 ABC_CcmA_heme_exporter 98.2 4E-06 8.8E-11 82.7 7.6 71 938-1014 124-194 (201)
110 PF07888 CALCOCO1: Calcium bin 98.2 0.012 2.6E-07 64.3 34.0 21 856-876 432-452 (546)
111 cd03235 ABC_Metallic_Cations A 98.2 3.8E-06 8.2E-11 84.0 7.2 62 938-1005 131-192 (213)
112 TIGR01166 cbiO cobalt transpor 98.2 3.8E-06 8.1E-11 82.2 6.9 62 938-1005 126-187 (190)
113 PF05557 MAD: Mitotic checkpoi 98.2 1.8E-05 3.9E-10 94.1 13.9 94 813-909 566-659 (722)
114 KOG1029 Endocytic adaptor prot 98.2 0.0073 1.6E-07 66.5 31.7 110 314-423 472-582 (1118)
115 TIGR02680 conserved hypothetic 98.2 0.071 1.5E-06 68.3 67.7 78 22-99 3-92 (1353)
116 cd03225 ABC_cobalt_CbiO_domain 98.1 4.3E-06 9.3E-11 83.6 7.2 62 938-1005 133-194 (211)
117 cd03274 ABC_SMC4_euk Eukaryoti 98.1 4.2E-06 9.1E-11 82.6 7.0 79 937-1019 125-203 (212)
118 COG4988 CydD ABC-type transpor 98.1 3.9E-06 8.5E-11 90.7 7.2 59 940-1005 457-515 (559)
119 cd03268 ABC_BcrA_bacitracin_re 98.1 3.9E-06 8.5E-11 83.6 6.8 62 938-1005 125-186 (208)
120 PRK04778 septation ring format 98.1 0.0041 8.9E-08 71.7 31.9 191 226-424 231-431 (569)
121 COG4674 Uncharacterized ABC-ty 98.1 9.3E-07 2E-11 80.1 1.8 40 25-64 12-52 (249)
122 cd03230 ABC_DR_subfamily_A Thi 98.1 5.6E-06 1.2E-10 79.3 7.3 60 940-1005 96-155 (173)
123 COG1136 SalX ABC-type antimicr 98.1 5.6E-06 1.2E-10 79.8 7.1 64 937-1005 140-203 (226)
124 COG0396 sufC Cysteine desulfur 98.1 6.9E-06 1.5E-10 77.3 7.2 83 940-1029 145-227 (251)
125 TIGR00960 3a0501s02 Type II (G 98.1 5.2E-06 1.1E-10 83.3 7.1 62 938-1005 137-198 (216)
126 cd03259 ABC_Carb_Solutes_like 98.1 4.5E-06 9.7E-11 83.5 6.5 63 938-1005 129-191 (213)
127 TIGR02673 FtsE cell division A 98.1 5.6E-06 1.2E-10 83.0 7.1 62 938-1005 136-197 (214)
128 PF01576 Myosin_tail_1: Myosin 98.1 6.1E-07 1.3E-11 107.0 0.0 9 938-946 736-744 (859)
129 COG4559 ABC-type hemin transpo 98.1 3.5E-06 7.5E-11 77.8 4.7 69 935-1005 131-201 (259)
130 cd03269 ABC_putative_ATPase Th 98.1 5.8E-06 1.3E-10 82.5 6.9 62 938-1005 127-188 (210)
131 COG4938 Uncharacterized conser 98.1 2.7E-06 5.8E-11 81.5 4.1 48 22-70 1-48 (374)
132 KOG0971 Microtubule-associated 98.1 0.018 4E-07 64.8 33.6 16 623-638 229-244 (1243)
133 cd03260 ABC_PstB_phosphate_tra 98.1 6.8E-06 1.5E-10 83.2 7.1 61 938-1005 140-200 (227)
134 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.1 7.6E-06 1.6E-10 82.2 7.1 62 938-1005 141-202 (224)
135 cd03293 ABC_NrtD_SsuB_transpor 98.1 6.7E-06 1.5E-10 82.7 6.8 63 938-1005 130-192 (220)
136 cd03237 ABC_RNaseL_inhibitor_d 98.1 7.1E-06 1.5E-10 83.3 6.9 63 938-1005 114-176 (246)
137 cd03229 ABC_Class3 This class 98.1 7.8E-06 1.7E-10 78.8 6.9 61 940-1005 101-161 (178)
138 TIGR02211 LolD_lipo_ex lipopro 98.1 7.6E-06 1.6E-10 82.5 7.0 63 938-1005 140-202 (221)
139 cd03246 ABCC_Protease_Secretio 98.1 9.2E-06 2E-10 77.9 7.2 60 940-1005 97-156 (173)
140 cd03216 ABC_Carb_Monos_I This 98.1 1E-05 2.2E-10 76.5 7.4 60 940-1005 83-142 (163)
141 cd03226 ABC_cobalt_CbiO_domain 98.1 9E-06 2E-10 80.7 7.3 62 938-1005 125-186 (205)
142 PRK13539 cytochrome c biogenes 98.1 1.3E-05 2.9E-10 79.4 8.5 62 938-1005 126-187 (207)
143 COG1120 FepC ABC-type cobalami 98.0 3.9E-06 8.4E-11 82.8 4.4 32 37-68 21-53 (258)
144 PRK14079 recF recombination pr 98.0 0.00041 8.8E-09 74.4 20.1 129 864-1003 170-326 (349)
145 TIGR01189 ccmA heme ABC export 98.0 9.3E-06 2E-10 80.0 7.0 62 938-1005 126-187 (198)
146 cd03232 ABC_PDR_domain2 The pl 98.0 9.7E-06 2.1E-10 79.2 7.0 61 939-1005 108-168 (192)
147 cd03266 ABC_NatA_sodium_export 98.0 8.7E-06 1.9E-10 81.8 6.9 62 938-1005 135-196 (218)
148 PRK11247 ssuB aliphatic sulfon 98.0 8.8E-06 1.9E-10 83.2 6.9 63 938-1005 132-194 (257)
149 TIGR01184 ntrCD nitrate transp 98.0 8.8E-06 1.9E-10 82.2 6.8 63 938-1005 113-175 (230)
150 cd03264 ABC_drug_resistance_li 98.0 9.9E-06 2.1E-10 80.9 7.1 61 938-1005 129-189 (211)
151 cd03214 ABC_Iron-Siderophores_ 98.0 1.1E-05 2.4E-10 77.9 7.1 64 937-1005 95-158 (180)
152 cd03262 ABC_HisP_GlnQ_permease 98.0 1.1E-05 2.3E-10 80.9 7.2 62 938-1005 134-195 (213)
153 PRK11629 lolD lipoprotein tran 98.0 9.4E-06 2E-10 82.4 6.9 63 938-1005 144-206 (233)
154 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.0 9E-06 2E-10 81.7 6.6 63 938-1005 139-201 (218)
155 PRK13543 cytochrome c biogenes 98.0 1.3E-05 2.7E-10 80.1 7.5 62 938-1005 136-197 (214)
156 cd03245 ABCC_bacteriocin_expor 98.0 1E-05 2.3E-10 81.4 7.0 77 938-1024 139-215 (220)
157 cd03263 ABC_subfamily_A The AB 98.0 1.1E-05 2.3E-10 81.4 7.0 61 938-1005 132-192 (220)
158 cd03215 ABC_Carb_Monos_II This 98.0 1.2E-05 2.5E-10 77.9 6.9 60 940-1005 105-164 (182)
159 PRK13538 cytochrome c biogenes 98.0 1.1E-05 2.4E-10 79.8 7.0 62 938-1005 128-189 (204)
160 PRK13540 cytochrome c biogenes 98.0 1.2E-05 2.6E-10 79.3 7.2 62 938-1005 126-187 (200)
161 cd03292 ABC_FtsE_transporter F 98.0 1.2E-05 2.5E-10 80.7 7.1 62 938-1005 135-196 (214)
162 PRK10619 histidine/lysine/argi 98.0 1.2E-05 2.6E-10 83.0 7.3 62 938-1005 151-212 (257)
163 TIGR01277 thiQ thiamine ABC tr 98.0 1.2E-05 2.5E-10 80.4 6.9 63 938-1005 127-189 (213)
164 cd03261 ABC_Org_Solvent_Resist 98.0 1E-05 2.2E-10 82.3 6.7 63 938-1005 135-197 (235)
165 PRK14245 phosphate ABC transpo 98.0 1.2E-05 2.6E-10 82.6 7.2 61 938-1005 145-205 (250)
166 KOG0994 Extracellular matrix g 98.0 0.066 1.4E-06 62.2 55.0 25 252-276 1233-1257(1758)
167 cd03224 ABC_TM1139_LivF_branch 98.0 1.2E-05 2.6E-10 81.2 7.0 62 938-1005 131-192 (222)
168 cd03256 ABC_PhnC_transporter A 98.0 1.2E-05 2.5E-10 82.5 7.0 63 938-1005 143-205 (241)
169 cd03213 ABCG_EPDR ABCG transpo 98.0 1.4E-05 3.1E-10 78.1 7.2 61 939-1005 111-171 (194)
170 TIGR03608 L_ocin_972_ABC putat 98.0 1.4E-05 2.9E-10 79.7 7.2 62 938-1005 133-194 (206)
171 COG1124 DppF ABC-type dipeptid 98.0 1.1E-05 2.4E-10 76.9 6.0 64 937-1005 139-202 (252)
172 cd03238 ABC_UvrA The excision 98.0 1.7E-05 3.6E-10 75.1 7.2 83 937-1026 85-167 (176)
173 cd03219 ABC_Mj1267_LivG_branch 98.0 1.2E-05 2.7E-10 81.9 6.9 62 938-1005 142-203 (236)
174 PRK10584 putative ABC transpor 98.0 1.3E-05 2.8E-10 81.2 7.0 63 938-1005 145-207 (228)
175 PRK11264 putative amino-acid A 98.0 1.5E-05 3.2E-10 82.2 7.4 62 938-1005 143-204 (250)
176 COG0444 DppD ABC-type dipeptid 98.0 1.1E-05 2.3E-10 81.0 6.0 64 937-1005 151-214 (316)
177 PRK11614 livF leucine/isoleuci 98.0 1.2E-05 2.7E-10 81.8 6.8 62 938-1005 136-197 (237)
178 cd03265 ABC_DrrA DrrA is the A 98.0 1.4E-05 3E-10 80.4 7.0 63 938-1005 130-192 (220)
179 cd03222 ABC_RNaseL_inhibitor T 98.0 1.8E-05 3.8E-10 75.0 7.2 61 940-1005 72-132 (177)
180 PRK14268 phosphate ABC transpo 98.0 1.4E-05 3E-10 82.5 7.1 61 938-1005 153-213 (258)
181 COG4694 Uncharacterized protei 98.0 0.028 6E-07 60.0 30.6 146 843-1004 447-596 (758)
182 PRK10908 cell division protein 98.0 1.5E-05 3.3E-10 80.2 7.2 62 938-1005 136-197 (222)
183 cd03297 ABC_ModC_molybdenum_tr 98.0 1.3E-05 2.9E-10 80.1 6.8 63 938-1005 130-192 (214)
184 TIGR03771 anch_rpt_ABC anchore 98.0 1.5E-05 3.2E-10 80.1 7.1 62 938-1005 112-173 (223)
185 PRK14269 phosphate ABC transpo 98.0 1.5E-05 3.2E-10 81.7 7.2 61 938-1005 141-201 (246)
186 TIGR03864 PQQ_ABC_ATP ABC tran 98.0 1.4E-05 3.1E-10 81.2 7.0 63 938-1005 131-193 (236)
187 cd03218 ABC_YhbG The ABC trans 98.0 1.4E-05 3.1E-10 81.2 7.0 62 938-1005 132-193 (232)
188 PRK14247 phosphate ABC transpo 98.0 1.5E-05 3.1E-10 82.1 7.1 61 938-1005 145-205 (250)
189 cd03248 ABCC_TAP TAP, the Tran 98.0 1.5E-05 3.3E-10 80.5 7.2 61 938-1005 149-209 (226)
190 PRK11248 tauB taurine transpor 98.0 1.4E-05 3E-10 82.1 6.8 63 938-1005 127-189 (255)
191 PRK14270 phosphate ABC transpo 98.0 1.6E-05 3.4E-10 81.8 7.3 62 937-1005 145-206 (251)
192 cd03298 ABC_ThiQ_thiamine_tran 98.0 1.5E-05 3.3E-10 79.6 6.9 63 938-1005 127-189 (211)
193 cd03233 ABC_PDR_domain1 The pl 98.0 1.5E-05 3.3E-10 78.5 6.8 81 937-1024 116-197 (202)
194 cd03217 ABC_FeS_Assembly ABC-t 98.0 1.8E-05 3.9E-10 77.9 7.3 62 938-1005 103-164 (200)
195 PRK14242 phosphate transporter 98.0 1.5E-05 3.3E-10 82.1 7.1 61 938-1005 148-208 (253)
196 TIGR03740 galliderm_ABC gallid 98.0 1.5E-05 3.2E-10 80.4 6.9 62 938-1005 123-184 (223)
197 TIGR00972 3a0107s01c2 phosphat 98.0 1.6E-05 3.4E-10 81.6 7.1 62 937-1005 142-203 (247)
198 TIGR01188 drrA daunorubicin re 98.0 1.6E-05 3.6E-10 83.9 7.4 62 938-1005 123-184 (302)
199 PRK09493 glnQ glutamine ABC tr 97.9 1.6E-05 3.5E-10 81.2 7.0 62 938-1005 135-196 (240)
200 PRK10771 thiQ thiamine transpo 97.9 1.7E-05 3.6E-10 80.5 7.1 63 938-1005 128-190 (232)
201 cd03228 ABCC_MRP_Like The MRP 97.9 1.8E-05 3.9E-10 75.7 6.9 59 940-1005 97-155 (171)
202 PRK14241 phosphate transporter 97.9 1.7E-05 3.6E-10 82.0 7.2 62 937-1005 146-207 (258)
203 cd03223 ABCD_peroxisomal_ALDP 97.9 2.8E-05 6E-10 73.7 8.1 60 937-1005 89-148 (166)
204 COG1131 CcmA ABC-type multidru 97.9 1.5E-05 3.3E-10 82.9 6.8 81 937-1024 134-214 (293)
205 TIGR02315 ABC_phnC phosphonate 97.9 1.4E-05 3E-10 82.0 6.5 63 938-1005 144-206 (243)
206 PF10174 Cast: RIM-binding pro 97.9 0.084 1.8E-06 61.7 64.9 36 842-877 563-598 (775)
207 cd03258 ABC_MetN_methionine_tr 97.9 1.5E-05 3.3E-10 81.0 6.7 63 938-1005 139-201 (233)
208 COG4598 HisP ABC-type histidin 97.9 1.9E-05 4.2E-10 70.5 6.3 76 938-1023 151-228 (256)
209 cd03296 ABC_CysA_sulfate_impor 97.9 1.5E-05 3.2E-10 81.3 6.6 63 938-1005 135-197 (239)
210 PRK11124 artP arginine transpo 97.9 1.7E-05 3.6E-10 81.2 6.9 62 938-1005 140-201 (242)
211 PRK14259 phosphate ABC transpo 97.9 1.8E-05 3.8E-10 82.1 7.2 61 938-1005 153-213 (269)
212 PRK14262 phosphate ABC transpo 97.9 1.8E-05 3.9E-10 81.5 7.2 62 937-1005 144-205 (250)
213 TIGR03411 urea_trans_UrtD urea 97.9 1.7E-05 3.8E-10 81.1 7.0 61 938-1005 142-202 (242)
214 cd03254 ABCC_Glucan_exporter_l 97.9 1.8E-05 4E-10 80.3 7.1 62 937-1005 137-198 (229)
215 PRK14273 phosphate ABC transpo 97.9 1.9E-05 4E-10 81.5 7.3 62 937-1005 148-209 (254)
216 PRK11231 fecE iron-dicitrate t 97.9 1.9E-05 4E-10 81.5 7.3 62 938-1005 137-198 (255)
217 TIGR01978 sufC FeS assembly AT 97.9 1.7E-05 3.6E-10 81.4 6.9 61 939-1005 144-204 (243)
218 PRK13546 teichoic acids export 97.9 2E-05 4.3E-10 80.9 7.3 62 938-1005 142-203 (264)
219 PRK13643 cbiO cobalt transport 97.9 2E-05 4.4E-10 82.4 7.5 62 938-1005 143-204 (288)
220 PRK13638 cbiO cobalt transport 97.9 2E-05 4.3E-10 82.0 7.3 62 938-1005 135-196 (271)
221 PRK11831 putative ABC transpor 97.9 1.7E-05 3.6E-10 82.3 6.8 63 938-1005 142-204 (269)
222 PRK14240 phosphate transporter 97.9 1.9E-05 4.2E-10 81.2 7.2 61 938-1005 145-205 (250)
223 PRK15056 manganese/iron transp 97.9 2E-05 4.4E-10 81.9 7.4 62 938-1005 141-202 (272)
224 TIGR02323 CP_lyasePhnK phospho 97.9 1.8E-05 3.8E-10 81.7 6.9 63 938-1005 147-209 (253)
225 PRK13631 cbiO cobalt transport 97.9 2.1E-05 4.6E-10 83.1 7.6 62 938-1005 175-236 (320)
226 cd03244 ABCC_MRP_domain2 Domai 97.9 2E-05 4.3E-10 79.5 7.1 61 938-1005 138-198 (221)
227 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.9 1.9E-05 4.1E-10 80.6 7.0 78 938-1025 138-215 (238)
228 KOG0971 Microtubule-associated 97.9 0.065 1.4E-06 60.7 33.9 19 619-637 232-250 (1243)
229 TIGR01288 nodI ATP-binding ABC 97.9 1.9E-05 4.1E-10 83.4 7.2 62 938-1005 134-195 (303)
230 COG1121 ZnuC ABC-type Mn/Zn tr 97.9 8.3E-06 1.8E-10 80.0 4.1 118 36-157 22-147 (254)
231 TIGR02324 CP_lyasePhnL phospho 97.9 2.1E-05 4.6E-10 79.4 7.2 63 937-1005 147-209 (224)
232 cd03252 ABCC_Hemolysin The ABC 97.9 2E-05 4.4E-10 80.4 7.2 79 937-1025 136-214 (237)
233 PRK14274 phosphate ABC transpo 97.9 1.9E-05 4.2E-10 81.6 7.1 62 937-1005 153-214 (259)
234 cd03257 ABC_NikE_OppD_transpor 97.9 1.8E-05 4E-10 80.3 6.8 63 938-1005 144-206 (228)
235 PRK13651 cobalt transporter AT 97.9 2E-05 4.4E-10 82.7 7.2 63 937-1005 163-225 (305)
236 PRK14239 phosphate transporter 97.9 2.1E-05 4.5E-10 81.2 7.2 62 937-1005 146-207 (252)
237 PRK14244 phosphate ABC transpo 97.9 2.1E-05 4.5E-10 80.9 7.2 61 938-1005 148-208 (251)
238 cd03267 ABC_NatA_like Similar 97.9 2E-05 4.3E-10 80.0 6.9 63 938-1005 152-214 (236)
239 PRK11637 AmiB activator; Provi 97.9 0.0083 1.8E-07 66.8 28.2 75 619-693 48-122 (428)
240 TIGR02770 nickel_nikD nickel i 97.9 2E-05 4.3E-10 79.8 6.9 63 938-1005 124-186 (230)
241 cd03247 ABCC_cytochrome_bd The 97.9 2.5E-05 5.4E-10 75.4 7.2 62 937-1005 96-157 (178)
242 PRK13649 cbiO cobalt transport 97.9 2.1E-05 4.5E-10 82.4 7.2 62 938-1005 144-205 (280)
243 cd03251 ABCC_MsbA MsbA is an e 97.9 2.2E-05 4.8E-10 79.9 7.2 79 938-1026 137-215 (234)
244 PRK10744 pstB phosphate transp 97.9 2.3E-05 4.9E-10 81.0 7.3 61 938-1005 155-215 (260)
245 PRK15079 oligopeptide ABC tran 97.9 1.4E-05 3.1E-10 84.8 5.8 63 938-1005 160-222 (331)
246 cd03270 ABC_UvrA_I The excisio 97.9 2.4E-05 5.3E-10 78.4 7.3 63 938-1005 136-199 (226)
247 PRK14271 phosphate ABC transpo 97.9 2.2E-05 4.8E-10 81.5 7.2 61 938-1005 162-222 (276)
248 COG1120 FepC ABC-type cobalami 97.9 1.7E-05 3.8E-10 78.3 5.9 74 936-1014 135-208 (258)
249 COG5293 Predicted ATPase [Gene 97.9 0.044 9.5E-07 56.9 30.8 131 863-1004 414-554 (591)
250 PRK14250 phosphate ABC transpo 97.9 2.5E-05 5.4E-10 79.7 7.2 63 938-1005 130-192 (241)
251 PRK13541 cytochrome c biogenes 97.9 2.7E-05 5.8E-10 76.4 7.2 62 938-1005 122-183 (195)
252 TIGR01186 proV glycine betaine 97.9 1.4E-05 3.1E-10 85.2 5.6 62 939-1005 129-190 (363)
253 PRK14254 phosphate ABC transpo 97.9 2.6E-05 5.6E-10 81.4 7.4 61 938-1005 179-239 (285)
254 PRK09580 sufC cysteine desulfu 97.9 2.6E-05 5.7E-10 80.2 7.4 61 939-1005 145-205 (248)
255 PRK14238 phosphate transporter 97.9 2.4E-05 5.3E-10 81.2 7.1 61 938-1005 166-226 (271)
256 PRK15112 antimicrobial peptide 97.9 2.1E-05 4.5E-10 81.6 6.6 63 938-1005 148-210 (267)
257 COG1340 Uncharacterized archae 97.9 0.035 7.6E-07 55.3 29.6 22 841-862 228-249 (294)
258 PRK14255 phosphate ABC transpo 97.9 2.7E-05 5.8E-10 80.3 7.3 62 937-1005 146-207 (252)
259 PRK13545 tagH teichoic acids e 97.9 2.6E-05 5.7E-10 85.3 7.4 62 938-1005 142-203 (549)
260 cd03294 ABC_Pro_Gly_Bertaine T 97.9 2.5E-05 5.5E-10 80.9 7.1 63 938-1005 159-221 (269)
261 cd03301 ABC_MalK_N The N-termi 97.9 2.4E-05 5.2E-10 78.3 6.7 63 938-1005 129-191 (213)
262 PRK14272 phosphate ABC transpo 97.9 2.7E-05 5.9E-10 80.3 7.3 62 937-1005 146-207 (252)
263 PRK14235 phosphate transporter 97.9 2.8E-05 6E-10 80.6 7.3 61 938-1005 162-222 (267)
264 PRK10575 iron-hydroxamate tran 97.9 2.6E-05 5.6E-10 80.8 7.0 63 938-1005 146-208 (265)
265 PRK14248 phosphate ABC transpo 97.9 2.7E-05 5.7E-10 81.0 7.1 62 937-1005 162-223 (268)
266 TIGR01187 potA spermidine/putr 97.9 2.4E-05 5.2E-10 83.3 6.9 63 938-1005 99-161 (325)
267 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 3.2E-05 6.9E-10 71.1 6.8 57 940-1005 71-127 (144)
268 PRK14253 phosphate ABC transpo 97.9 3E-05 6.5E-10 79.7 7.4 62 937-1005 143-204 (249)
269 PRK10247 putative ABC transpor 97.9 2.8E-05 6E-10 78.4 7.0 63 938-1005 136-198 (225)
270 PRK09544 znuC high-affinity zi 97.9 2.7E-05 5.8E-10 79.6 6.9 63 938-1005 119-181 (251)
271 PRK14261 phosphate ABC transpo 97.9 2.6E-05 5.7E-10 80.3 7.0 61 938-1005 148-208 (253)
272 TIGR03410 urea_trans_UrtE urea 97.9 2.7E-05 5.9E-10 79.0 6.9 63 938-1005 130-192 (230)
273 PRK14275 phosphate ABC transpo 97.9 2.8E-05 6E-10 81.3 7.2 61 938-1005 181-241 (286)
274 cd03234 ABCG_White The White s 97.9 3.1E-05 6.8E-10 78.2 7.3 63 937-1005 141-203 (226)
275 cd03295 ABC_OpuCA_Osmoprotecti 97.9 2.3E-05 5.1E-10 80.1 6.5 63 938-1005 134-196 (242)
276 TIGR02314 ABC_MetN D-methionin 97.9 2.5E-05 5.4E-10 82.9 6.8 63 938-1005 139-201 (343)
277 PRK13548 hmuV hemin importer A 97.9 3E-05 6.5E-10 79.9 7.3 67 938-1005 133-201 (258)
278 PRK14267 phosphate ABC transpo 97.9 2.7E-05 5.9E-10 80.3 6.9 62 937-1005 147-208 (253)
279 PRK14265 phosphate ABC transpo 97.9 3.1E-05 6.7E-10 80.5 7.3 61 938-1005 160-220 (274)
280 PRK14264 phosphate ABC transpo 97.9 3E-05 6.5E-10 81.9 7.3 61 938-1005 199-259 (305)
281 PRK13637 cbiO cobalt transport 97.9 3E-05 6.4E-10 81.1 7.2 63 938-1005 143-205 (287)
282 PRK11153 metN DL-methionine tr 97.9 2.7E-05 5.8E-10 83.5 7.0 63 938-1005 139-201 (343)
283 PRK14266 phosphate ABC transpo 97.9 2.6E-05 5.6E-10 80.3 6.6 62 937-1005 144-205 (250)
284 PRK11022 dppD dipeptide transp 97.8 2.8E-05 6.1E-10 82.5 7.0 64 937-1005 151-214 (326)
285 cd03369 ABCC_NFT1 Domain 2 of 97.8 3.4E-05 7.4E-10 76.7 7.2 61 938-1005 124-184 (207)
286 PRK14263 phosphate ABC transpo 97.8 3.4E-05 7.3E-10 79.5 7.3 61 938-1005 148-208 (261)
287 CHL00131 ycf16 sulfate ABC tra 97.8 3.2E-05 6.9E-10 79.8 7.2 60 940-1005 152-211 (252)
288 PRK13639 cbiO cobalt transport 97.8 3.2E-05 6.9E-10 80.5 7.2 62 938-1005 136-197 (275)
289 cd03253 ABCC_ATM1_transporter 97.8 3.3E-05 7.1E-10 78.8 7.1 61 938-1005 136-196 (236)
290 PRK14243 phosphate transporter 97.8 3.3E-05 7.2E-10 79.9 7.2 62 937-1005 149-210 (264)
291 TIGR03005 ectoine_ehuA ectoine 97.8 3.1E-05 6.6E-10 79.8 6.9 63 938-1005 145-207 (252)
292 PRK14258 phosphate ABC transpo 97.8 3.4E-05 7.3E-10 79.7 7.2 63 938-1005 149-211 (261)
293 COG4525 TauB ABC-type taurine 97.8 2.6E-05 5.7E-10 70.9 5.4 64 937-1005 130-193 (259)
294 PRK13645 cbiO cobalt transport 97.8 2.9E-05 6.4E-10 81.5 6.9 63 938-1005 149-211 (289)
295 PRK10895 lipopolysaccharide AB 97.8 3.3E-05 7.1E-10 79.0 7.0 62 938-1005 136-197 (241)
296 PRK10070 glycine betaine trans 97.8 3.1E-05 6.8E-10 83.7 7.1 63 938-1005 163-225 (400)
297 PRK11308 dppF dipeptide transp 97.8 3.2E-05 7E-10 82.0 7.1 64 937-1005 152-215 (327)
298 PRK11650 ugpC glycerol-3-phosp 97.8 2E-05 4.4E-10 84.4 5.6 63 938-1005 133-195 (356)
299 TIGR03873 F420-0_ABC_ATP propo 97.8 3.5E-05 7.7E-10 79.5 7.2 62 938-1005 136-197 (256)
300 PRK13641 cbiO cobalt transport 97.8 3.9E-05 8.5E-10 80.3 7.6 62 938-1005 144-205 (287)
301 PRK13646 cbiO cobalt transport 97.8 3.5E-05 7.5E-10 80.7 7.2 63 938-1005 144-206 (286)
302 PRK13647 cbiO cobalt transport 97.8 3.7E-05 8.1E-10 79.9 7.3 62 938-1005 137-198 (274)
303 PF09726 Macoilin: Transmembra 97.8 0.014 3.1E-07 67.6 28.4 91 629-725 422-512 (697)
304 PRK14251 phosphate ABC transpo 97.8 3.5E-05 7.5E-10 79.4 6.9 61 938-1005 146-206 (251)
305 PRK13632 cbiO cobalt transport 97.8 3.5E-05 7.7E-10 80.0 6.9 63 938-1005 141-203 (271)
306 PRK13536 nodulation factor exp 97.8 2.7E-05 5.9E-10 82.9 6.2 58 6-65 28-89 (340)
307 PRK11300 livG leucine/isoleuci 97.8 3.8E-05 8.3E-10 79.4 7.2 63 938-1005 152-214 (255)
308 PRK10418 nikD nickel transport 97.8 3.8E-05 8.2E-10 79.1 7.1 63 938-1005 139-201 (254)
309 COG4559 ABC-type hemin transpo 97.8 5.8E-05 1.3E-09 70.0 7.3 44 25-68 8-52 (259)
310 PRK15439 autoinducer 2 ABC tra 97.8 3.5E-05 7.5E-10 88.3 7.4 62 938-1005 402-463 (510)
311 PRK13648 cbiO cobalt transport 97.8 4.2E-05 9.2E-10 79.4 7.3 63 938-1005 141-203 (269)
312 PRK13536 nodulation factor exp 97.8 4.1E-05 8.9E-10 81.5 7.3 62 938-1005 171-232 (340)
313 PRK10253 iron-enterobactin tra 97.8 4.3E-05 9.3E-10 79.2 7.3 63 938-1005 142-204 (265)
314 PRK14260 phosphate ABC transpo 97.8 4.2E-05 9E-10 79.0 7.1 62 937-1005 148-209 (259)
315 PRK11701 phnK phosphonate C-P 97.8 4.2E-05 9.2E-10 79.0 7.2 63 938-1005 150-212 (258)
316 PRK03695 vitamin B12-transport 97.8 4.6E-05 1E-09 77.9 7.4 66 938-1005 125-193 (248)
317 COG1116 TauB ABC-type nitrate/ 97.8 3.2E-05 7E-10 74.7 5.7 64 937-1005 128-191 (248)
318 COG1125 OpuBA ABC-type proline 97.8 3.3E-05 7.2E-10 73.7 5.6 64 937-1005 133-196 (309)
319 PRK14256 phosphate ABC transpo 97.8 4.3E-05 9.3E-10 78.7 7.1 62 937-1005 146-207 (252)
320 PRK14236 phosphate transporter 97.8 4.4E-05 9.6E-10 79.4 7.2 61 938-1005 167-227 (272)
321 PRK13409 putative ATPase RIL; 97.8 2.6E-05 5.6E-10 89.7 5.9 64 937-1005 451-514 (590)
322 PRK13537 nodulation ABC transp 97.8 4.4E-05 9.5E-10 80.5 7.2 62 938-1005 137-198 (306)
323 PRK14237 phosphate transporter 97.8 4.7E-05 1E-09 78.9 7.4 61 938-1005 162-222 (267)
324 COG4133 CcmA ABC-type transpor 97.8 1.9E-05 4.1E-10 71.7 3.7 65 937-1007 128-192 (209)
325 KOG1029 Endocytic adaptor prot 97.8 0.087 1.9E-06 58.6 31.5 14 850-863 565-578 (1118)
326 PRK09473 oppD oligopeptide tra 97.8 3.2E-05 6.8E-10 82.2 6.0 64 937-1005 159-222 (330)
327 PRK15093 antimicrobial peptide 97.8 4.1E-05 8.9E-10 81.7 6.9 64 937-1005 156-219 (330)
328 PRK13634 cbiO cobalt transport 97.8 4.6E-05 1E-09 79.9 7.1 63 938-1005 144-206 (290)
329 PRK13644 cbiO cobalt transport 97.8 5E-05 1.1E-09 78.9 7.4 62 938-1005 135-196 (274)
330 TIGR03258 PhnT 2-aminoethylpho 97.8 2.9E-05 6.2E-10 83.3 5.6 65 937-1005 135-199 (362)
331 PRK14252 phosphate ABC transpo 97.8 4.8E-05 1.1E-09 78.9 7.1 61 938-1005 160-220 (265)
332 TIGR03269 met_CoM_red_A2 methy 97.8 3.6E-05 7.9E-10 88.7 6.8 64 937-1005 166-229 (520)
333 TIGR02633 xylG D-xylose ABC tr 97.8 4E-05 8.7E-10 87.9 7.2 62 938-1005 402-463 (500)
334 PRK10419 nikE nickel transport 97.8 5.3E-05 1.1E-09 78.5 7.3 63 938-1005 150-212 (268)
335 cd03271 ABC_UvrA_II The excisi 97.8 6.2E-05 1.4E-09 76.1 7.6 65 938-1005 168-232 (261)
336 PRK09452 potA putrescine/sperm 97.8 3.3E-05 7.1E-10 83.2 5.9 63 938-1005 143-205 (375)
337 PRK11000 maltose/maltodextrin 97.8 3.9E-05 8.5E-10 83.0 6.6 63 938-1005 132-194 (369)
338 cd03300 ABC_PotA_N PotA is an 97.8 4.7E-05 1E-09 77.2 6.8 63 938-1005 129-191 (232)
339 PRK10938 putative molybdenum t 97.8 3.7E-05 8E-10 87.9 6.8 63 937-1005 133-195 (490)
340 KOG0977 Nuclear envelope prote 97.8 0.063 1.4E-06 59.0 30.4 38 815-852 298-335 (546)
341 PRK13650 cbiO cobalt transport 97.8 5.2E-05 1.1E-09 79.1 7.2 63 938-1005 139-201 (279)
342 cd03279 ABC_sbcCD SbcCD and ot 97.8 6.2E-05 1.3E-09 74.9 7.4 67 937-1005 121-193 (213)
343 COG4619 ABC-type uncharacteriz 97.8 5.6E-05 1.2E-09 67.0 6.0 64 937-1005 131-194 (223)
344 TIGR02142 modC_ABC molybdenum 97.8 4.8E-05 1E-09 82.1 7.0 63 938-1005 130-192 (354)
345 PRK14249 phosphate ABC transpo 97.8 6.1E-05 1.3E-09 77.5 7.4 62 937-1005 145-206 (251)
346 PRK13642 cbiO cobalt transport 97.7 5.6E-05 1.2E-09 78.8 7.2 63 938-1005 139-201 (277)
347 PRK11637 AmiB activator; Provi 97.7 0.023 4.9E-07 63.4 28.0 69 621-689 57-125 (428)
348 PRK13547 hmuV hemin importer A 97.7 5.7E-05 1.2E-09 78.0 6.9 68 937-1005 143-215 (272)
349 PRK10762 D-ribose transporter 97.7 4.8E-05 1E-09 87.1 7.1 62 938-1005 394-455 (501)
350 COG4372 Uncharacterized protei 97.7 0.067 1.5E-06 54.2 28.0 13 133-145 29-41 (499)
351 KOG0057 Mitochondrial Fe/S clu 97.7 7.8E-05 1.7E-09 79.6 7.9 60 939-1005 487-546 (591)
352 PRK09984 phosphonate/organopho 97.7 5.5E-05 1.2E-09 78.4 6.8 63 938-1005 151-213 (262)
353 PRK11144 modC molybdate transp 97.7 5.4E-05 1.2E-09 81.5 7.0 63 938-1005 127-189 (352)
354 COG1117 PstB ABC-type phosphat 97.7 7.4E-05 1.6E-09 69.5 6.6 61 938-1005 148-208 (253)
355 PRK09700 D-allose transporter 97.7 4.4E-05 9.5E-10 87.8 6.5 62 938-1005 408-469 (510)
356 TIGR02769 nickel_nikE nickel i 97.7 6E-05 1.3E-09 78.1 6.9 63 938-1005 149-211 (265)
357 KOG0977 Nuclear envelope prote 97.7 0.095 2.1E-06 57.6 30.9 23 808-830 312-334 (546)
358 cd03238 ABC_UvrA The excision 97.7 2.8E-05 6.1E-10 73.6 4.0 29 35-63 12-41 (176)
359 PF06470 SMC_hinge: SMC protei 97.7 3.9E-05 8.5E-10 68.4 4.8 112 451-566 2-115 (120)
360 PRK15177 Vi polysaccharide exp 97.7 5.8E-05 1.3E-09 75.0 6.4 79 938-1026 103-182 (213)
361 PRK11174 cysteine/glutathione 97.7 5E-05 1.1E-09 89.3 7.0 59 940-1005 486-544 (588)
362 PRK13633 cobalt transporter AT 97.7 6.7E-05 1.4E-09 78.4 7.1 63 938-1005 143-205 (280)
363 PRK10938 putative molybdenum t 97.7 5.1E-05 1.1E-09 86.8 6.8 63 938-1005 400-462 (490)
364 PRK15134 microcin C ABC transp 97.7 5.4E-05 1.2E-09 87.4 7.0 64 937-1005 154-217 (529)
365 COG1119 ModF ABC-type molybden 97.7 9E-05 1.9E-09 71.0 7.1 65 937-1005 169-233 (257)
366 PRK13635 cbiO cobalt transport 97.7 7.5E-05 1.6E-09 77.8 7.3 63 938-1005 139-201 (279)
367 PRK14257 phosphate ABC transpo 97.7 7.1E-05 1.5E-09 79.4 7.2 60 939-1005 225-284 (329)
368 PRK10982 galactose/methyl gala 97.7 5.9E-05 1.3E-09 86.2 7.1 63 937-1005 132-194 (491)
369 PRK10851 sulfate/thiosulfate t 97.7 4.4E-05 9.6E-10 81.8 5.7 63 938-1005 135-197 (353)
370 COG1127 Ttg2A ABC-type transpo 97.7 6E-05 1.3E-09 71.7 5.8 74 936-1014 142-215 (263)
371 PRK13549 xylose transporter AT 97.7 6.2E-05 1.3E-09 86.3 7.2 62 938-1005 404-465 (506)
372 COG1579 Zn-ribbon protein, pos 97.7 0.0092 2E-07 58.0 20.5 97 320-420 44-140 (239)
373 PRK13636 cbiO cobalt transport 97.7 7.2E-05 1.6E-09 78.2 7.0 64 937-1005 139-202 (283)
374 cd03299 ABC_ModC_like Archeal 97.7 7.6E-05 1.7E-09 75.8 7.1 63 938-1005 128-190 (235)
375 cd03291 ABCC_CFTR1 The CFTR su 97.7 8.3E-05 1.8E-09 76.9 7.4 78 938-1024 158-235 (282)
376 PRK13640 cbiO cobalt transport 97.7 7.6E-05 1.6E-09 77.9 7.2 63 938-1005 142-204 (282)
377 cd03236 ABC_RNaseL_inhibitor_d 97.7 8.2E-05 1.8E-09 75.9 7.2 62 938-1005 138-199 (255)
378 TIGR02203 MsbA_lipidA lipid A 97.7 5.7E-05 1.2E-09 88.7 7.0 59 940-1005 470-528 (571)
379 COG1123 ATPase components of v 97.7 5.1E-05 1.1E-09 82.8 5.9 84 937-1027 427-510 (539)
380 TIGR02633 xylG D-xylose ABC tr 97.7 6.4E-05 1.4E-09 86.2 7.1 63 937-1005 139-201 (500)
381 TIGR00968 3a0106s01 sulfate AB 97.7 7.6E-05 1.7E-09 75.9 6.9 63 938-1005 129-191 (237)
382 PRK15134 microcin C ABC transp 97.7 4.6E-05 1E-09 87.9 5.9 63 938-1005 424-486 (529)
383 PRK14246 phosphate ABC transpo 97.7 8.2E-05 1.8E-09 76.4 7.1 61 938-1005 152-212 (257)
384 PRK10982 galactose/methyl gala 97.7 7.1E-05 1.5E-09 85.6 7.3 62 938-1005 390-451 (491)
385 COG1135 AbcC ABC-type metal io 97.7 7.7E-05 1.7E-09 73.8 6.3 64 937-1005 139-202 (339)
386 COG4181 Predicted ABC-type tra 97.7 0.00011 2.3E-09 65.5 6.6 62 937-1004 144-206 (228)
387 PRK11288 araG L-arabinose tran 97.7 5.6E-05 1.2E-09 86.6 6.4 62 938-1005 395-456 (501)
388 PRK11288 araG L-arabinose tran 97.7 6.8E-05 1.5E-09 85.9 7.1 63 937-1005 138-200 (501)
389 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.7 6.7E-05 1.4E-09 69.0 5.6 32 34-65 16-48 (144)
390 cd03250 ABCC_MRP_domain1 Domai 97.7 0.00012 2.5E-09 72.7 7.6 62 938-1005 126-188 (204)
391 TIGR03522 GldA_ABC_ATP gliding 97.7 8.6E-05 1.9E-09 78.3 6.9 61 938-1005 132-192 (301)
392 COG4175 ProV ABC-type proline/ 97.7 7.4E-05 1.6E-09 73.8 5.8 64 937-1005 162-225 (386)
393 PRK11432 fbpC ferric transport 97.6 5.7E-05 1.2E-09 80.8 5.5 63 938-1005 135-197 (351)
394 COG1340 Uncharacterized archae 97.6 0.083 1.8E-06 52.8 31.6 25 844-868 224-248 (294)
395 TIGR03415 ABC_choXWV_ATP choli 97.6 6.2E-05 1.3E-09 80.8 5.8 63 938-1005 163-225 (382)
396 cd03215 ABC_Carb_Monos_II This 97.6 5.5E-05 1.2E-09 73.2 5.0 45 21-67 5-50 (182)
397 PRK13652 cbiO cobalt transport 97.6 0.0001 2.3E-09 76.8 7.3 63 938-1005 136-198 (277)
398 PF00005 ABC_tran: ABC transpo 97.6 3.2E-05 6.9E-10 71.1 3.1 30 37-66 4-34 (137)
399 PRK15439 autoinducer 2 ABC tra 97.6 8.4E-05 1.8E-09 85.2 7.2 63 937-1005 138-200 (510)
400 PRK13549 xylose transporter AT 97.6 8E-05 1.7E-09 85.4 7.0 63 937-1005 141-203 (506)
401 TIGR02982 heterocyst_DevA ABC 97.6 9.5E-05 2.1E-09 74.3 6.7 62 939-1005 141-202 (220)
402 COG1119 ModF ABC-type molybden 97.6 0.00013 2.8E-09 70.0 6.9 30 36-66 51-80 (257)
403 cd03264 ABC_drug_resistance_li 97.6 5.4E-05 1.2E-09 75.6 4.7 32 34-65 16-47 (211)
404 TIGR03269 met_CoM_red_A2 methy 97.6 8.1E-05 1.8E-09 85.8 6.8 64 937-1005 425-488 (520)
405 PRK13538 cytochrome c biogenes 97.6 7.5E-05 1.6E-09 73.9 5.7 33 34-66 17-50 (204)
406 COG1579 Zn-ribbon protein, pos 97.6 0.033 7.1E-07 54.3 23.1 125 621-749 13-137 (239)
407 PRK13631 cbiO cobalt transport 97.6 0.0001 2.2E-09 78.0 6.9 63 2-66 3-75 (320)
408 PRK14247 phosphate ABC transpo 97.6 6.8E-05 1.5E-09 77.2 5.5 32 35-66 20-52 (250)
409 PRK13409 putative ATPase RIL; 97.6 9.8E-05 2.1E-09 85.0 7.3 62 937-1005 210-271 (590)
410 cd03288 ABCC_SUR2 The SUR doma 97.6 0.00012 2.5E-09 75.6 7.2 61 938-1005 155-215 (257)
411 TIGR03719 ABC_ABC_ChvD ATP-bin 97.6 6.7E-05 1.4E-09 86.9 6.0 60 937-1005 441-500 (552)
412 PRK10261 glutathione transport 97.6 5.9E-05 1.3E-09 88.3 5.6 64 937-1005 461-524 (623)
413 COG2274 SunT ABC-type bacterio 97.6 0.00011 2.5E-09 85.0 7.7 60 939-1005 609-668 (709)
414 TIGR03265 PhnT2 putative 2-ami 97.6 9.9E-05 2.2E-09 79.1 6.8 63 938-1005 133-195 (353)
415 PRK13539 cytochrome c biogenes 97.6 8.1E-05 1.8E-09 73.8 5.7 32 34-65 18-50 (207)
416 cd00267 ABC_ATPase ABC (ATP-bi 97.6 7E-05 1.5E-09 70.6 5.0 34 34-67 15-49 (157)
417 cd03290 ABCC_SUR1_N The SUR do 97.6 0.00012 2.7E-09 73.4 7.1 63 938-1005 139-202 (218)
418 COG1124 DppF ABC-type dipeptid 97.6 7.6E-05 1.6E-09 71.4 5.1 122 36-159 25-151 (252)
419 PRK09536 btuD corrinoid ABC tr 97.6 0.00012 2.5E-09 79.4 7.3 63 937-1005 137-199 (402)
420 PRK09700 D-allose transporter 97.6 9.9E-05 2.1E-09 84.9 7.2 63 937-1005 143-205 (510)
421 TIGR02868 CydC thiol reductant 97.6 9.7E-05 2.1E-09 85.6 7.1 58 940-1004 471-528 (529)
422 cd03289 ABCC_CFTR2 The CFTR su 97.6 0.00013 2.7E-09 75.3 7.0 60 939-1005 138-197 (275)
423 PRK13657 cyclic beta-1,2-gluca 97.6 0.0001 2.2E-09 86.6 7.2 59 940-1005 472-530 (588)
424 PF00038 Filament: Intermediat 97.6 0.15 3.3E-06 54.4 31.6 28 847-874 275-302 (312)
425 COG4942 Membrane-bound metallo 97.6 0.1 2.3E-06 55.1 28.0 68 620-687 40-107 (420)
426 TIGR02315 ABC_phnC phosphonate 97.6 7.8E-05 1.7E-09 76.5 5.5 32 34-65 18-50 (243)
427 TIGR00630 uvra excinuclease AB 97.6 0.00011 2.3E-09 87.7 7.3 64 937-1005 485-549 (924)
428 cd03262 ABC_HisP_GlnQ_permease 97.6 8.6E-05 1.9E-09 74.4 5.6 32 34-65 16-48 (213)
429 PF05667 DUF812: Protein of un 97.6 0.2 4.3E-06 57.1 32.4 35 632-666 328-362 (594)
430 cd03296 ABC_CysA_sulfate_impor 97.6 8.6E-05 1.9E-09 75.7 5.7 30 36-65 20-50 (239)
431 COG1137 YhbG ABC-type (unclass 97.6 0.00017 3.8E-09 66.2 6.8 60 939-1005 139-198 (243)
432 PRK10789 putative multidrug tr 97.6 0.00011 2.4E-09 85.6 7.1 60 939-1005 451-510 (569)
433 PRK10636 putative ABC transpor 97.6 8.3E-05 1.8E-09 87.1 6.1 59 938-1005 429-487 (638)
434 PRK11176 lipid transporter ATP 97.6 0.0001 2.2E-09 86.7 6.9 59 940-1005 481-539 (582)
435 COG1101 PhnK ABC-type uncharac 97.6 0.00012 2.6E-09 68.1 5.7 82 938-1026 147-228 (263)
436 TIGR01166 cbiO cobalt transpor 97.6 5.9E-05 1.3E-09 73.8 4.0 32 34-65 8-40 (190)
437 PRK11248 tauB taurine transpor 97.6 0.0001 2.2E-09 75.7 5.9 32 34-65 17-49 (255)
438 TIGR02673 FtsE cell division A 97.6 9.8E-05 2.1E-09 74.0 5.7 32 34-65 18-50 (214)
439 PRK10762 D-ribose transporter 97.6 0.00011 2.5E-09 84.0 7.0 63 937-1005 139-201 (501)
440 PRK11607 potG putrescine trans 97.6 8.9E-05 1.9E-09 80.0 5.6 64 937-1005 147-210 (377)
441 PRK10261 glutathione transport 97.6 0.0001 2.3E-09 86.3 6.7 64 937-1005 166-229 (623)
442 COG1132 MdlB ABC-type multidru 97.6 0.00011 2.3E-09 86.0 6.7 78 940-1027 466-543 (567)
443 TIGR03375 type_I_sec_LssB type 97.6 0.00011 2.5E-09 88.0 7.1 77 940-1026 602-678 (694)
444 COG1126 GlnQ ABC-type polar am 97.6 9E-05 1.9E-09 69.3 4.7 22 44-65 29-50 (240)
445 PRK14262 phosphate ABC transpo 97.6 0.00011 2.3E-09 75.7 5.8 33 34-66 19-52 (250)
446 PRK11264 putative amino-acid A 97.5 0.0001 2.2E-09 76.0 5.5 31 35-65 20-51 (250)
447 cd03224 ABC_TM1139_LivF_branch 97.5 0.0001 2.2E-09 74.4 5.5 31 34-64 16-47 (222)
448 PRK13638 cbiO cobalt transport 97.5 0.00011 2.4E-09 76.4 5.9 32 34-65 17-49 (271)
449 PRK14261 phosphate ABC transpo 97.5 0.00011 2.4E-09 75.8 5.6 34 34-67 22-56 (253)
450 PRK14266 phosphate ABC transpo 97.5 0.00012 2.5E-09 75.4 5.9 48 20-68 3-54 (250)
451 PRK14242 phosphate transporter 97.5 0.00011 2.3E-09 75.9 5.6 33 34-66 22-55 (253)
452 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.5 6.8E-05 1.5E-09 75.4 4.0 34 34-67 20-54 (218)
453 TIGR03185 DNA_S_dndD DNA sulfu 97.5 0.3 6.5E-06 57.9 34.9 104 886-1004 504-613 (650)
454 COG3839 MalK ABC-type sugar tr 97.5 0.00011 2.5E-09 75.8 5.6 30 37-66 22-52 (338)
455 cd03269 ABC_putative_ATPase Th 97.5 0.00012 2.7E-09 72.9 5.8 32 34-65 16-48 (210)
456 COG0411 LivG ABC-type branched 97.5 2.3E-05 5E-10 74.9 0.5 36 29-64 12-51 (250)
457 PRK13648 cbiO cobalt transport 97.5 0.0001 2.2E-09 76.6 5.2 33 34-66 25-58 (269)
458 cd03265 ABC_DrrA DrrA is the A 97.5 0.00012 2.7E-09 73.5 5.7 32 34-65 16-48 (220)
459 TIGR01192 chvA glucan exporter 97.5 0.00016 3.4E-09 84.4 7.3 60 939-1005 471-530 (585)
460 PRK10790 putative multidrug tr 97.5 0.00015 3.1E-09 85.4 7.1 59 940-1005 477-535 (592)
461 cd03219 ABC_Mj1267_LivG_branch 97.5 0.0001 2.2E-09 75.2 5.0 32 34-65 16-48 (236)
462 PF05667 DUF812: Protein of un 97.5 0.29 6.4E-06 55.8 32.9 38 625-662 328-365 (594)
463 PRK11160 cysteine/glutathione 97.5 0.00017 3.6E-09 84.1 7.5 79 939-1027 475-553 (574)
464 PRK11247 ssuB aliphatic sulfon 97.5 0.00014 3E-09 74.4 6.0 31 35-65 29-60 (257)
465 cd03263 ABC_subfamily_A The AB 97.5 8E-05 1.7E-09 75.0 4.1 33 34-66 18-51 (220)
466 PF12718 Tropomyosin_1: Tropom 97.5 0.047 1E-06 49.3 21.2 36 626-661 8-43 (143)
467 PRK13540 cytochrome c biogenes 97.5 0.00015 3.2E-09 71.6 5.9 32 34-65 17-49 (200)
468 PRK14250 phosphate ABC transpo 97.5 0.00014 3E-09 74.2 5.8 32 35-66 20-52 (241)
469 cd03226 ABC_cobalt_CbiO_domain 97.5 7.7E-05 1.7E-09 74.0 3.9 32 34-65 16-48 (205)
470 COG2884 FtsE Predicted ATPase 97.5 0.00031 6.7E-09 64.1 7.1 63 937-1005 135-197 (223)
471 PRK13541 cytochrome c biogenes 97.5 0.00015 3.4E-09 71.1 5.9 31 37-67 19-50 (195)
472 COG1123 ATPase components of v 97.5 0.0002 4.4E-09 78.2 7.1 64 937-1005 152-215 (539)
473 cd03256 ABC_PhnC_transporter A 97.5 0.00013 2.9E-09 74.7 5.5 34 34-67 17-51 (241)
474 cd03261 ABC_Org_Solvent_Resist 97.5 0.00011 2.4E-09 74.8 4.9 32 34-65 16-48 (235)
475 cd03268 ABC_BcrA_bacitracin_re 97.5 0.00015 3.3E-09 72.1 5.8 32 34-65 16-48 (208)
476 TIGR00960 3a0501s02 Type II (G 97.5 0.00015 3.3E-09 72.6 5.8 33 34-66 19-52 (216)
477 PRK15177 Vi polysaccharide exp 97.5 8.8E-05 1.9E-09 73.7 4.0 30 36-65 5-35 (213)
478 PRK13537 nodulation ABC transp 97.5 0.00011 2.3E-09 77.6 4.8 30 36-65 25-55 (306)
479 PRK14253 phosphate ABC transpo 97.5 0.00013 2.8E-09 75.1 5.3 31 36-66 21-52 (249)
480 TIGR01842 type_I_sec_PrtD type 97.5 0.00019 4.2E-09 83.3 7.4 79 939-1026 454-532 (544)
481 cd03223 ABCD_peroxisomal_ALDP 97.5 9E-05 1.9E-09 70.3 3.8 32 34-65 17-49 (166)
482 cd03230 ABC_DR_subfamily_A Thi 97.5 9.4E-05 2E-09 70.9 4.0 31 34-64 16-47 (173)
483 PRK14273 phosphate ABC transpo 97.5 0.00017 3.6E-09 74.4 6.1 46 21-66 8-56 (254)
484 PRK11231 fecE iron-dicitrate t 97.5 0.00014 3E-09 75.0 5.6 30 36-65 20-50 (255)
485 TIGR02211 LolD_lipo_ex lipopro 97.5 0.00015 3.3E-09 73.1 5.7 33 34-66 21-54 (221)
486 cd03248 ABCC_TAP TAP, the Tran 97.5 0.00019 4.2E-09 72.5 6.5 49 19-67 10-64 (226)
487 PRK11629 lolD lipoprotein tran 97.5 0.00015 3.3E-09 73.6 5.8 33 34-66 25-58 (233)
488 PRK09493 glnQ glutamine ABC tr 97.5 0.00015 3.3E-09 74.0 5.8 33 34-66 17-50 (240)
489 TIGR03864 PQQ_ABC_ATP ABC tran 97.5 0.00015 3.2E-09 73.8 5.7 31 34-64 17-48 (236)
490 PRK14236 phosphate transporter 97.5 0.00019 4.1E-09 74.6 6.5 32 34-65 41-73 (272)
491 PRK14274 phosphate ABC transpo 97.5 0.00015 3.3E-09 74.9 5.7 32 36-67 30-62 (259)
492 cd03293 ABC_NrtD_SsuB_transpor 97.5 8.6E-05 1.9E-09 74.7 3.8 31 35-65 21-52 (220)
493 KOG0995 Centromere-associated 97.5 0.25 5.3E-06 53.8 33.3 9 493-501 128-136 (581)
494 cd03229 ABC_Class3 This class 97.5 0.00018 3.9E-09 69.3 5.8 31 34-64 16-47 (178)
495 cd03259 ABC_Carb_Solutes_like 97.5 0.00015 3.3E-09 72.5 5.6 32 34-65 16-48 (213)
496 TIGR01978 sufC FeS assembly AT 97.5 0.00013 2.8E-09 74.9 5.1 32 34-65 16-48 (243)
497 cd03242 ABC_RecF RecF is a rec 97.5 0.00024 5.2E-09 73.6 7.1 80 938-1023 182-267 (270)
498 PRK14259 phosphate ABC transpo 97.5 0.00019 4E-09 74.5 6.3 46 20-66 13-62 (269)
499 cd03216 ABC_Carb_Monos_I This 97.5 0.00018 4E-09 67.9 5.7 31 34-64 16-47 (163)
500 cd03225 ABC_cobalt_CbiO_domain 97.5 0.00012 2.7E-09 73.1 4.8 32 34-65 17-49 (211)
No 1
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=4.3e-118 Score=960.92 Aligned_cols=1022 Identities=35% Similarity=0.538 Sum_probs=767.2
Q ss_pred cccccCCCCCCCCCceEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCccccccccccccccc
Q 001573 7 KRLKVSRGEDDYMPGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKR 86 (1051)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~ 86 (1051)
+.++....-++|++|.|.+|+|+||.+|..+++.|+|.+|+|+||||||||||+||||+||||.|...|||.++.+||++
T Consensus 6 ~~~~l~~~~~sf~~GsIvrI~l~NF~Ty~~~e~~pgpsLNmIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~ 85 (1072)
T KOG0979|consen 6 SDPALPLNYSSFPDGSIVRIELHNFLTYDHTEFLPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIKR 85 (1072)
T ss_pred cccccCCCcccCCCCceEEEEEeeeeeeeeeeecCCCceeeEECCCCCCchHHHHHHHHHcCCChhhccchhHHHHHHhc
Confidence 34444444577999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEEEEecCCCceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHhccCchHH
Q 001573 87 GEESGYIKISLRGDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKL 166 (1051)
Q Consensus 87 g~~~a~v~i~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~~~~~ 166 (1051)
|++.+.|+|++.+ .+..++|+|.|.+++.|.|+|||..++.+++.++...|+|+++|+|+||||++|.+|+..+|..+
T Consensus 86 G~~~g~IEI~l~~--~~e~~~ItR~I~~~k~S~y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~L 163 (1072)
T KOG0979|consen 86 GEDEGYIEIELKD--KDETLTITRLISRDKESKYFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIEL 163 (1072)
T ss_pred CCccceEEEEEec--CCCceEEEEEEeecCCcceeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHH
Confidence 9999999999995 58999999999998999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCcHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhch
Q 001573 167 LEETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKY 246 (1051)
Q Consensus 167 ~~~~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 246 (1051)
+..++.++|.+.+...+.+|.++..+...++..+......+..++++++.+++.++.+.+......+++-+..+..|+.|
T Consensus 164 L~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y 243 (1072)
T KOG0979|consen 164 LVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEY 243 (1072)
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 247 DMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLEKVDQVGVQVQGK 326 (1051)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (1051)
.....++...+.....++.++..+.+...++......++.+..+...++......+......+......+......+..+
T Consensus 244 ~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~ 323 (1072)
T KOG0979|consen 244 KKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEK 323 (1072)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 327 YKEMQELRRQEQSRQQRILKAREELAAAELDLQTVPAYEPPHDKIEKLGSQILELGVQANQKRLQKSEKEKILNQNKLTL 406 (1051)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (1051)
...++.++......+..+....+.+...+..+...+.......+.+++..++.+.......-..+..+.+.........+
T Consensus 324 ~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~l 403 (1072)
T KOG0979|consen 324 KNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDAEQLKSQKLRDL 403 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888888888877777766665544333333333333333333344
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhccCcccHHHHHHHHHHhhcccCCcccccceeEEeeCCcchHHHHHhhhcccccceEEE
Q 001573 407 RQCSDRLKDMEDKNNKLLHALRNSGAENIFEAYCWLQQHRHELNKEAYGPVLLEVNVSNRAHANYLEDHVGHYIWKSFIT 486 (1051)
Q Consensus 407 ~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~i~~~~~~~~~~ie~~l~~~~~~~~~v 486 (1051)
.+....+........+..-.....+++++..++.|+++++..|...+|+|+...+.++++.++.++|+++|-+.+.+|+|
T Consensus 404 ~~~kr~~~~~~~~~~~k~~~~l~~~~~d~~dAy~wlrenr~~FK~~vyeP~~m~l~~k~~~~A~~lEn~v~~~~~~~Fi~ 483 (1072)
T KOG0979|consen 404 ENKKRKLKQNSDLNRQKRYRVLRQGSSDAYDAYQWLRENRSEFKDEVYEPPIMTLNVKNAEFAKYLENFVGFNDLKAFIC 483 (1072)
T ss_pred HHHHHHHHHHhhhhhhhHHHHhccCchHHHHHHHHHHHCHHHhcccccCCceEEEecCChHHHHHHHcccCccccceeee
Confidence 44555554444433322122222344889999999999999999999999999999999999999999999999999999
Q ss_pred echhhHHHHHhhcCC--CCcceEeecCCCCC--CCCCCCChHHHHhcCcceeecccccCcHHHHHHHHhhhCCcccccCC
Q 001573 487 QDAGDRDFLAKNLKP--FDVPILNYVSNESS--RKEPFQISEEMRALGISARLDQVFDAPHAVKEVLISQFGLDSSYIGS 562 (1051)
Q Consensus 487 ~~~~~~~~l~~~l~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~l~~l~~~~~~~~~~l~~~~~~~~~~i~~ 562 (1051)
.+..|+..+...++. +++..+...+.+.. -..|...+..++..||.+++.+++.+|+++..+||...++|...|
T Consensus 484 ~~~eD~~lf~~~i~d~k~~vn~~~~~~~~~k~~d~~p~~sre~l~~lGF~gyls~f~~~p~~vm~~Lc~~~~ih~IPv-- 561 (1072)
T KOG0979|consen 484 CDSEDYLLFVKKIKDEKWRVNASEVIPREKKYADKIPAQSREELKRLGFEGYLSNFIEAPEPVMSYLCNVSKIHRIPV-- 561 (1072)
T ss_pred echHHHHHHHHHhhhcceeeeceeccccccccccCCCccCHHHHHhcChHHHhhhhhcCcHHHHHHHHHhcccccccc--
Confidence 999999999888776 33333322222211 111455566778899999999999999999999999999999544
Q ss_pred CcchhhhhHhhhcCcceEEeCCceEEEEeeccCC-------------cceeeeecccCCccccccCChhHHHHHHHHHHH
Q 001573 563 KETDQKADNVAKLGILDFWTPENHYRWSISRYGG-------------HVSASVEPVNQSRLLLCSVDGNEIERLRSKKKK 629 (1051)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------------~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 629 (1051)
...+....++.. ...+-+++|.+.+....||+ .+....+++....++.+... +......
T Consensus 562 s~~~~~e~~~~~--~~~~r~~~~~~~~~~~i~g~~~~~i~~S~ygs~~v~~~~~~lk~~~f~~~~~~------l~~~~~~ 633 (1072)
T KOG0979|consen 562 SKREVEEAIVEV--LQNIRQPNGSVFLKRNIAGGRSKSIKKSAYGSRQVITRNDPLKSRNFFSVSPV------LEELDNR 633 (1072)
T ss_pred CcccccHHHHHH--HhccccCCCchhHHHHhhcCchhhhhhhccccceeeecCCcchhhhhhccchH------HHHHHHH
Confidence 443333222221 11333444443333333332 12222222222233333321 1111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccHHHHHHHHHH
Q 001573 630 LEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESIEKE-DDINTALAKLVD 708 (1051)
Q Consensus 630 l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~~~~~l~~l~~~-~~~~~~~~~l~~ 708 (1051)
.++.+..+..+++.....++.++.+.+.....+......+..+......+...+...+.....++.. ..+...-+++..
T Consensus 634 ~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~qkee~~~ 713 (1072)
T KOG0979|consen 634 IEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENLVVDLDRQEEEYAA 713 (1072)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333333333333333333333333333333333333333333333222222222222211 000000000100
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 709 ----QAADLNIQQFKYAIEIKNLLVEIVS-------CKWSYAEKHMASIEFDAKIRELEFNLKQHEKLALQASLHYEDCK 777 (1051)
Q Consensus 709 ----~~~~l~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~ 777 (1051)
.+..............-++...+.. ....+.......-+++..+...+..+..+......++..+....
T Consensus 714 ~~~~~I~~~~~~~~~~~~~~~~~~~k~~e~~i~~~~~~~~~~~s~~~~iea~~~i~~~e~~i~~~~~~~~~lk~a~~~~k 793 (1072)
T KOG0979|consen 714 SEAKKILDTEDMRIQSIRWHLELTDKHKEIGIKEKNESSYMARSNKNNIEAERKIEKLEDNISFLEAREDLLKTALEDKK 793 (1072)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 0111111110000000000000000 00000111111112222223333333333333333333333322
Q ss_pred HHHHHHH--HHHHHHHHHHHHhhcCC----HHHHHHHhccCCCHHHHHHHHHHHHHhchhccCCCHHHHHHHHHHHHHHH
Q 001573 778 KEVEHCR--KHLSDAKRQAESIAFIT----PELEKEFLEMPTTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIE 851 (1051)
Q Consensus 778 ~~~~~~~--~~l~~~~~~~~~~~~~~----~e~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (1051)
....... ..+.............. ..+..++.+.|.+..++...|..-......+..+|..+.++|+....++.
T Consensus 794 ~~a~~~~~~~~~~t~~~~~~s~~~~~~ek~~~~~~e~~e~p~t~~eld~~I~~e~t~~~~~~n~ne~~vq~y~~r~~el~ 873 (1072)
T KOG0979|consen 794 KEAAEKRKEQSLQTLKREIMSPATNKIEKSLVLMKELAEEPTTMDELDQAITDELTRALKFENVNEDAVQQYEVREDELR 873 (1072)
T ss_pred HHHHhcccchhHHHhhhccccccccchhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 2222222 11111111111111111 12456778889999999999988888776777899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcceEEEEeccCCcccccceEEEEEecCCCc
Q 001573 852 DLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQ 931 (1051)
Q Consensus 852 ~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~F~~~f~~l~~~g~~~l~~~~~~~~~~gl~i~v~~~~~~~ 931 (1051)
.+...+......+..+.+.+....+.|.+.+.+++..|+.+|+.+|+.+|+.|++.|++++.|++.|||.|+|+|+++++
T Consensus 874 ~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~~Fs~~F~~mg~aGeV~L~~~~~DydkwgI~ImVkFR~s~~ 953 (1072)
T KOG0979|consen 874 ELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINERFSQLFSSMGCAGEVSLEVNPLDYDKWGIMIMVKFRDSEG 953 (1072)
T ss_pred HHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEeccCcccHhHhceEEEEEEccCcc
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred cccccccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC
Q 001573 932 LEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEY 1011 (1051)
Q Consensus 932 ~~~~~~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~ 1011 (1051)
++.|+.+.+||||||++|+.||+|||.++||||+|+|||++||||.|.+.||+.|+..+|..+++|||+|||++|++|+|
T Consensus 954 L~~L~sh~QSGGERSVSTiLYLlALQ~l~~~PFRvVDEINQGMDp~NER~Vh~~mV~~ac~entsQyFliTPKLLpgL~Y 1033 (1072)
T KOG0979|consen 954 LKVLDSHRQSGGERSVSTILYLLALQELTPAPFRVVDEINQGMDPRNERKVHDIMVNMACKENTSQYFLITPKLLPGLDY 1033 (1072)
T ss_pred cccccccccCCcchHHHHHHHHHHHhhccCCCeeehhhhhcCCCchhHHHHHHHHHHHhhcCCCcceEEecchhcCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred CCCeEEEEEecCCCCCCCCCCCChhhhHh
Q 001573 1012 SEACSILNIMNGPWIEQPSKVWSSGECWG 1040 (1051)
Q Consensus 1012 ~~~~~v~~~~~g~~~~~~~~~~~~~~~~~ 1040 (1051)
+..|+|+|+|||||+|.|++.|.++.+++
T Consensus 1034 senm~Il~v~ng~~~~~p~~~~~~~~f~~ 1062 (1072)
T KOG0979|consen 1034 SENMKILCVMNGPWIAEPSHTWTSAKFDA 1062 (1072)
T ss_pred hhcceEEEEecCCcCCCCccCchHHHHHH
Confidence 99999999999999999999999999886
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.7e-98 Score=917.09 Aligned_cols=956 Identities=20% Similarity=0.279 Sum_probs=546.2
Q ss_pred ceEEEEEEecccccc-ceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCce------eEE
Q 001573 21 GNIIEIELHNFMTFD-HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEES------GYI 93 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~-~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~------a~v 93 (1051)
|+|++|++.||+||. +++|+|+||+|+||||||||||||+|||+||||+.+++.+||+++.|+|+.|... |.|
T Consensus 1 m~lk~i~l~gFKSF~~~~~i~f~~~~t~IvGPNGSGKSNI~DAi~fVLG~~s~k~lRa~~~~DlIf~g~~~r~~~~~A~V 80 (1163)
T COG1196 1 MYLKRIELKGFKSFADPTEINFSPGFTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLRASKMSDLIFAGSGNRKPANYAEV 80 (1163)
T ss_pred CeeeEEEEECcccCCCCeeeecCCCCeEEECCCCCchHHHHHHHHHHhCcchhhhhhccCCcceeeCCCCCCCCCCceEE
Confidence 899999999999999 6889999999999999999999999999999999999999999999999999877 999
Q ss_pred EEEEEecCC-----CceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHhccCchHHHH
Q 001573 94 KISLRGDTK-----EEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLE 168 (1051)
Q Consensus 94 ~i~~~~~~~-----~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~~~~~~~ 168 (1051)
+|+|+|.++ ..+++|+|++.++|+|.|+|||+.|+.+||..+|..+||+.++| +|++||+|.+|++++|.+|+.
T Consensus 81 ~l~fdN~d~~~~~~~~ei~v~Rri~r~g~S~Y~INg~~~~~~dI~~l~~~~gi~~~~~-~iV~QG~V~~i~~~kp~err~ 159 (1163)
T COG1196 81 ELTFDNSDNTLPLEYEEISVTRRIYRDGESEYYINGEKVRLKDIQDLLADSGIGKESY-SIVSQGKVEEIINAKPEERRK 159 (1163)
T ss_pred EEEEeCCCCcCCcccceEEEEEEEEEcCCcEEEECCcEeeHHHHHHHHHhcCCCCCCC-ceeecccHHHHHcCCHHHHHH
Confidence 999998652 25899999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhchHH
Q 001573 169 ETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDM 248 (1051)
Q Consensus 169 ~~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 248 (1051)
+|++++|+..|..... +...++..+..++..+...+..++.+++.|+.+.+.+.+|..+..++..++..+.+..|..
T Consensus 160 iiEEaaGv~~y~~r~~---ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~ 236 (1163)
T COG1196 160 LIEEAAGVSKYKERKE---EAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKE 236 (1163)
T ss_pred HHHHHhchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999654443322 3344444445555555555555555555555555555566666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HH-----
Q 001573 249 KKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLE-------KV----- 316 (1051)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----- 316 (1051)
...++..+...+..+...+..+...+......+..+...+.++...+...+.....+...+..+.. .+
T Consensus 237 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~ 316 (1163)
T COG1196 237 LRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELEN 316 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555555555555555555555555554444444444444443333332211111111111110 00
Q ss_pred ---------HHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 001573 317 ---------DQVGVQVQGKYKEMQE--------------------------------LRRQEQSRQQRILKAREELAAAE 355 (1051)
Q Consensus 317 ---------~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~l~~~~ 355 (1051)
..+...+......+.. .......++.++..+..++..+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1163)
T COG1196 317 ELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIR 396 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000000 00000111111111111111111
Q ss_pred HHhhcCCC-CCCChH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Q 001573 356 LDLQTVPA-YEPPHD-------KIEKLGSQILELGVQANQKRLQKSEKEKILNQNKLTLRQCSDRLK------------- 414 (1051)
Q Consensus 356 ~~l~~~~~-~~~l~~-------~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~------------- 414 (1051)
.++..+.. +..+.. ++..+..++..+..++.....+...+..++..+...++.+..++.
T Consensus 397 ~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1163)
T COG1196 397 NELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEEL 476 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111110 111111 111111222222222211111122222222222222222222222
Q ss_pred -HHHhHHHHHHHHHhccCc--ccHHHHHHHHHH-hhcccCCcccccceeEEeeCCcchHHHHHhhhcccccceEEEechh
Q 001573 415 -DMEDKNNKLLHALRNSGA--ENIFEAYCWLQQ-HRHELNKEAYGPVLLEVNVSNRAHANYLEDHVGHYIWKSFITQDAG 490 (1051)
Q Consensus 415 -~l~~~~~~~~~~l~~~~~--~~~~~~~~~l~~-~~~~~~~~~~g~~~~~i~~~~~~~~~~ie~~l~~~~~~~~~v~~~~ 490 (1051)
.+...+......+..... .. ...+..+.. .... ..+++||++.++.+.. .|..||+.++|+.. .+++|++..
T Consensus 477 ~~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~-~~Gv~G~v~~li~v~~-~y~~Aie~alG~~l-~~vVV~~~~ 552 (1163)
T COG1196 477 QRLEKELSSLEARLDRLEAEQRA-SQGVRAVLEALESG-LPGVYGPVAELIKVKE-KYETALEAALGNRL-QAVVVENEE 552 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHhcc-CCCccchHHHhcCcCh-HHHHHHHHHccccc-CCeeeCChH
Confidence 222222211111110000 00 000111111 1222 3689999999999875 99999999999854 789999999
Q ss_pred hHHHHHhhcCCCCcceEeecCCCCCCCCCCCChHHHHhcCcceeecccccCcHHHHHHHHhhhCCcccccCCCcchhhhh
Q 001573 491 DRDFLAKNLKPFDVPILNYVSNESSRKEPFQISEEMRALGISARLDQVFDAPHAVKEVLISQFGLDSSYIGSKETDQKAD 570 (1051)
Q Consensus 491 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~ 570 (1051)
++..++.+++....+..++.|.+.....+..+... .+|+++++.+++.+||.|.+++..++| .++||. +...+..
T Consensus 553 ~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~--~~g~~~~a~dli~~d~~~~~~~~~~l~--~t~Iv~-~l~~A~~ 627 (1163)
T COG1196 553 VAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDA--APGFLGLASDLIDFDPKYEPAVRFVLG--DTLVVD-DLEQARR 627 (1163)
T ss_pred HHHHHHHHHhhcCCCccccCchhhhcccccccccc--ccchhHHHHHHhcCCHHHHHHHHHHhC--CeEEec-CHHHHHH
Confidence 99999999998888888887665432222111111 578888999999999999999999998 444544 4444445
Q ss_pred HhhhcC-cceEEeCCce-EEEEeeccCCcceeeeecccCCccccccCChhHHHHHHHHHHHHH-------HHHHHHHHHH
Q 001573 571 NVAKLG-ILDFWTPENH-YRWSISRYGGHVSASVEPVNQSRLLLCSVDGNEIERLRSKKKKLE-------ESVDELEESL 641 (1051)
Q Consensus 571 ~~~~~~-~~~~v~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-------~~~~~~~~~l 641 (1051)
+....+ ..++||++|. +... |.+|++.. -..++ +... .++..+..++..+. ..+..++..+
T Consensus 628 l~~~~~~~~riVTl~G~~~~~~-----G~~tGG~~-~~~~~-~~~~---~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (1163)
T COG1196 628 LARKLRIKYRIVTLDGDLVEPS-----GSITGGSR-NKRSS-LAQK---RELKELEEELAELEAQLEKLEEELKSLKNEL 697 (1163)
T ss_pred HHHhcCCCceEEecCCcEEeCC-----eeeecCCc-cccch-hhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555443 2388999884 3332 23332210 01111 0000 01111222222222 2222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH--------------HHHHHHHHHHHHHHHhhc-ccH
Q 001573 642 KSMQTEQRLIEDEAAKLQKEREEIINI-------VQIEKRKRRE--------------MENHINLRKRKLESIEKE-DDI 699 (1051)
Q Consensus 642 ~~l~~~~~~~~~~~~~l~~~~~~~~~~-------l~~~~~~~~~--------------l~~~i~~~~~~l~~l~~~-~~~ 699 (1051)
..+...+..+......+..++..+..+ ...+...+.. +..++..+...+..+... ..+
T Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 777 (1163)
T COG1196 698 RSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKL 777 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222221111111111111111 1111111111 111111111111111111 000
Q ss_pred H--------------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001573 700 N--------------TALAKLVDQAADLNIQQFKYA--------------IEIKNLLVEIVSCKWSYAEKHMASIEFDAK 751 (1051)
Q Consensus 700 ~--------------~~~~~l~~~~~~l~~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 751 (1051)
. ..+..+...+..+...+..+. .++..+..++..+...+..+...+..++..
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~ 857 (1163)
T COG1196 778 KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKE 857 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 0 111111112222211111111 111111111111222222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-------HHHhhcCCHHH----HH---HH-h
Q 001573 752 IRELEFNLKQHEKLALQASLHYEDCK-------KEVEHCRKHLSDAKRQ-------AESIAFITPEL----EK---EF-L 809 (1051)
Q Consensus 752 ~~~l~~~l~~~~~~~~~l~~~~~~~~-------~~~~~~~~~l~~~~~~-------~~~~~~~~~e~----~~---~~-~ 809 (1051)
+..+...+..+......+...+..+. .++..+...+..+... +..+......+ .. .. .
T Consensus 858 ~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 937 (1163)
T COG1196 858 LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEE 937 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 22222222222222222222222222 2222222222221111 11110000000 00 01 1
Q ss_pred ccCCCHH-HHHHHHHHHHHhchhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001573 810 EMPTTIE-ELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQ 888 (1051)
Q Consensus 810 ~~~~~~~-~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 888 (1051)
..+.... .+...+..++..+..++++|+.++++|+.+.++|+++..++.++..++..+.+.|..++..+...|.++|..
T Consensus 938 ~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~ 1017 (1163)
T COG1196 938 EYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDK 1017 (1163)
T ss_pred ccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222 688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcceEEEEe-ccCCcccccceEEEEEecCCCccccccccccCCchHHHHHHHHHHHhcccCCCCceEe
Q 001573 889 INETFSRNFQEMAVAGEVSLD-EHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVV 967 (1051)
Q Consensus 889 i~~~F~~~f~~l~~~g~~~l~-~~~~~~~~~gl~i~v~~~~~~~~~~~~~~~lSGGErs~~~lalllal~~~~~~Pf~vl 967 (1051)
|+.+|..+|..|++||.+.|. .+|+||...|++|.|+|| |++.+ +++.|||||||++||||+||||.++|||||||
T Consensus 1018 In~~F~~if~~L~~GG~a~L~l~~~dd~l~~Giei~a~pp-gK~~~--~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vL 1094 (1163)
T COG1196 1018 INENFSEIFKELFGGGTAELELTEPDDPLTAGIEISARPP-GKKLQ--SLSLLSGGEKSLTALALLFAIQKYRPAPFYVL 1094 (1163)
T ss_pred HHHHHHHHHHHhCCCCeeEEEeCCCCchhhcCcEEEEECC-CCCcc--chhhcCCcHHHHHHHHHHHHHHhhCCCCeeee
Confidence 999999999999998887777 577788899999999985 66544 56679999999999999999999999999999
Q ss_pred eccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 968 DEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 968 DEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
||||+|||++|+.++..+|.+.++ ++|||||||+.
T Consensus 1095 DEVDAaLD~~Nv~r~~~~i~e~s~---~sQFIvIThr~ 1129 (1163)
T COG1196 1095 DEVDAALDDANVERVARLIKEMSK---ETQFIVITHRK 1129 (1163)
T ss_pred ccchhhccHHHHHHHHHHHHHhCc---CCeEEEEEcCh
Confidence 999999999999999999998885 99999999995
No 3
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=100.00 E-value=3.1e-93 Score=781.94 Aligned_cols=979 Identities=20% Similarity=0.263 Sum_probs=621.6
Q ss_pred CceEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCceeEEEEEEEe
Q 001573 20 PGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRG 99 (1051)
Q Consensus 20 ~~~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~ 99 (1051)
.|+|.+|+|.|||||+++.|+|+|.+|+|+||||||||+||.||+.||||.++.+.||+++.|||+.|+++|.|.|++.|
T Consensus 39 sG~I~sI~L~NFMCHsnL~IeFg~~vNfI~G~NGSGKSAIltAl~lglG~rAs~tnRgsslK~lIK~G~~~A~IsItL~N 118 (1074)
T KOG0250|consen 39 SGKIESIHLTNFMCHSNLLIEFGPRVNFIVGNNGSGKSAILTALTLGLGGRASATNRGSSLKDLIKDGCSSAKISITLSN 118 (1074)
T ss_pred cceEEEEEEeeecccccceeccCCCceEeecCCCCcHHHHHHHHHHhhccccccccchhhHHHHHhCCCcceEEEEEEec
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC--------CceEEEEEEEecCCcceEEE---CCeeec--HHHHHHHHHHcCccccccccccccchHHHHhc-cCchH
Q 001573 100 DTK--------EEHLTIMRKIDTRNKSEWFF---NGKVVP--KGEVLEITKRFNIQVNNLTQFLPQDRVCEFAK-LSPVK 165 (1051)
Q Consensus 100 ~~~--------~~~~~i~R~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~-~~~~~ 165 (1051)
.+. |+.|+|.|+|.++|++.|.. +|+.|+ .+||..++.+|||+++|||+|++|+...+|+. ++|.+
T Consensus 119 ~G~~Afk~eiyG~~IiIER~I~~~~S~~~~~~~~~grvVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~~~~p~d 198 (1074)
T KOG0250|consen 119 SGLDAFKPEIYGNSIIIERTIRRSSSTYYLLRSANGRVVSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSFLANSNPKD 198 (1074)
T ss_pred CCcccCChhhcCCeeEEEEeeccccchHHHHhhccCccccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHHHhcCChHH
Confidence 653 58999999999988877765 466654 78999999999999999999999999999997 68999
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhc
Q 001573 166 LLEETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLK 245 (1051)
Q Consensus 166 ~~~~~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 245 (1051)
.+.+|.+++- |....+.+......+..+...+......+..++..+.+.+..+..++....+.+.+..++.++.|..
T Consensus 199 kYklfmkaT~---L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~ 275 (1074)
T KOG0250|consen 199 KYKLFMKATQ---LEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAW 275 (1074)
T ss_pred HHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999873 3444444455556666666666666667777777777777777777777888889999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 246 YDMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLEKVDQVGVQVQG 325 (1051)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (1051)
+.....++..+.+.+...+.....+++.+......+..+...+.+++..+..+....+....++..+.+.+..+......
T Consensus 276 V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~ 355 (1074)
T KOG0250|consen 276 VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVND 355 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888877777777777777777776666665555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCC--------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 326 KYKEMQELRRQEQSRQQRILKAREELAAAELDL-QTVPA--------YEPPHDKIEKLGSQILELGVQANQKRLQKSEKE 396 (1051)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~--------~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~ 396 (1051)
++.++......+...+..+..+++.|..++++. ..+.. ++.+..+++.++..+..+..+...+.+.+...+
T Consensus 356 ~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ 435 (1074)
T KOG0250|consen 356 LKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEE 435 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 555555555555555555555555555544444 11111 111222222222222222222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHhccCcccHHHHHHHHHHhhcccCCcccccceeEEeeCCcchHHHH
Q 001573 397 KILNQNKLTLRQCSDRLKDMEDKNNKLL----HALRNSGAENIFEAYCWLQQHRHELNKEAYGPVLLEVNVSNRAHANYL 472 (1051)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~----~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~i~~~~~~~~~~i 472 (1051)
.+...++..+..+...++.....+..+. ..+...+ +.+..++..|......|..+|.||+|.++.+.+|+|+.+|
T Consensus 436 ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG-~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aI 514 (1074)
T KOG0250|consen 436 EEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG-PNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAI 514 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc-hhhHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHH
Confidence 2222222222223333322222222221 1122236 8899999999998888889999999999999999999999
Q ss_pred HhhhcccccceEEEechhhHHHHHhhcCCC-----CcceEeecCCCCCCCCCCCChHHH-HhcCcceeecccccCcHHHH
Q 001573 473 EDHVGHYIWKSFITQDAGDRDFLAKNLKPF-----DVPILNYVSNESSRKEPFQISEEM-RALGISARLDQVFDAPHAVK 546 (1051)
Q Consensus 473 e~~l~~~~~~~~~v~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~l~~l~~~~~~~~ 546 (1051)
|.++|+ ++++|+|.++.|+..+.++++.. +++++++...+. .++... +...|++.+..+--.+|.|.
T Consensus 515 E~~L~n-~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~~------~y~~~~~p~~~~pTil~~le~ddp~V~ 587 (1074)
T KOG0250|consen 515 ERCLGN-LLNAFIVTSHKDARILRAIMRRLKIPGNRPTIVVSSFTPF------DYSVGRNPGYEFPTILDALEFDDPEVL 587 (1074)
T ss_pred HHHHHH-hhhhheeCCHhhHHHHHHHHHHcCCCCCCCcEEEecCCcc------ccccccCCCCCCCceeeeeecCChHHH
Confidence 999997 66899999999999988877643 344555442221 111110 11124555554444689999
Q ss_pred HHHHhhhCCcccccCCCcchhhhhHhhh---cCcceEEeCCceEEEEeec-cCCcceeeeecccCCccccccCChhHHHH
Q 001573 547 EVLISQFGLDSSYIGSKETDQKADNVAK---LGILDFWTPENHYRWSISR-YGGHVSASVEPVNQSRLLLCSVDGNEIER 622 (1051)
Q Consensus 547 ~~l~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 622 (1051)
++|.+..||+.++++.+..++..-+-.. .++..++|++|...+.++. |. ..++.+...+.++.... .
T Consensus 588 N~LID~s~iE~~lLiEdk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~~~~-~ySt~~~~~r~~~~~~~--------s 658 (1074)
T KOG0250|consen 588 NVLIDKSGIEQVLLIEDKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGPNYR-VYSTRGTRARRPGVDEF--------S 658 (1074)
T ss_pred HHhhhhccceeEEEecchHHHHHHHhcCCCCccceeeeccCccccccCCCCcc-eeccCCCCCCCccccch--------h
Confidence 9999999999988777655544222222 2234778888754322211 11 11111111111112211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhc--cc
Q 001573 623 LRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRK--LESIEKE--DD 698 (1051)
Q Consensus 623 l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~~~~~--l~~l~~~--~~ 698 (1051)
+...++.++.++..++.++..+..+..+++..+.+++..+..+...+......+.....++..+++. .....-. ..
T Consensus 659 ~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~ 738 (1074)
T KOG0250|consen 659 FDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLED 738 (1074)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHH
Confidence 2233444444444444444444444444444444444444444444444444444444444444442 0000000 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 699 INTALAKLVDQAADLNIQQFKYAIEIKNLLVEIVSCKWSYAEKHMASIEFDAKIRELEFNLKQHEKLALQASLHYEDCKK 778 (1051)
Q Consensus 699 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~ 778 (1051)
+...+.....++.+....+.++...+..+..+...+...+......+......++.+..++......+...+...-++..
T Consensus 739 l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~HyE~ 818 (1074)
T KOG0250|consen 739 LAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEKRHYED 818 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 11222222222222222233333333333333333333333333333333333333333333222222222222222222
Q ss_pred HHH-------HHHHHHHHHHHHHH-H---hhcCCHHHHHHHhccCCCHHHHHHHHHHHHHhchhccCCCHHHHHHHH---
Q 001573 779 EVE-------HCRKHLSDAKRQAE-S---IAFITPELEKEFLEMPTTIEELEAAIQDNISQANSIFFLNQNILQEYE--- 844 (1051)
Q Consensus 779 ~~~-------~~~~~l~~~~~~~~-~---~~~~~~e~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~--- 844 (1051)
.+. ..+..+...+.... . .....++...++..++...+++..++..++..++....+.....+.+.
T Consensus 819 ~~K~~l~~l~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ee~~~~~~e~~~~~~ 898 (1074)
T KOG0250|consen 819 KLKSRLEELKQKEVEKVNLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMCEESLGELEELHRGLH 898 (1074)
T ss_pred HHHHhhHHHHHHHHHHHhhhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 221 11111111111110 0 000011111233444556788899999999888877644332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcceEEEEeccCCcccccceEEEE
Q 001573 845 HRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLDEHESDFDKFGILIKV 924 (1051)
Q Consensus 845 ~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~F~~~f~~l~~~g~~~l~~~~~~~~~~gl~i~v 924 (1051)
.....+.........+...+..+...+..+...|......++-.....|..++...++.|.+.++ +. +..+.|.|
T Consensus 899 ~~~~~~~k~~~~k~~~~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~F~~~l~~R~~sg~l~~~-~e----~ktl~i~v 973 (1074)
T KOG0250|consen 899 EARKELKKEDELKVTLDELLKALGEALESREQKYQKFRKLLTRRATEEFDALLGKRGFSGKLEFD-HE----EKTLSISV 973 (1074)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcceeec-cc----ccccchhh
Confidence 22222222222233368888889999999999999888889999999999999999999999998 33 34566777
Q ss_pred -EecCCCccccccccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcC
Q 001573 925 -KFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTP 1003 (1051)
Q Consensus 925 -~~~~~~~~~~~~~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp 1003 (1051)
.|+++......|+..||||||||+|+||+||||..+.|||++|||||||||.+|++.++++|++.|.... +|||||||
T Consensus 974 ~~~~~~~~~~v~d~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRKi~~dlLv~~a~~~~-~Q~IfiTP 1052 (1074)
T KOG0250|consen 974 KLPTSGNEKAVRDTRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRKISMDLLVDFAKKKG-RQFIFITP 1052 (1074)
T ss_pred ccCCCCcccccccccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-ceEEEEcc
Confidence 4444443234578889999999999999999999999999999999999999999999999999998544 99999999
Q ss_pred CCCCCCCCCCCeEEEEEecCCC
Q 001573 1004 KLLPDLEYSEACSILNIMNGPW 1025 (1051)
Q Consensus 1004 ~~l~~~~~~~~~~v~~~~~g~~ 1025 (1051)
++|..|..+++++|+ .|+.|.
T Consensus 1053 qdi~~l~~~~~i~v~-rm~~pe 1073 (1074)
T KOG0250|consen 1053 QDISKLNSDDGIVVF-RMSDPE 1073 (1074)
T ss_pred ccHhhhccccceEEe-eccCCC
Confidence 999999999999999 488774
No 4
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.1e-83 Score=689.91 Aligned_cols=966 Identities=16% Similarity=0.208 Sum_probs=583.1
Q ss_pred ceEEEEEEecccccc-ceEE-ecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCC----ceeEEE
Q 001573 21 GNIIEIELHNFMTFD-HLIC-KPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGE----ESGYIK 94 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~-~~~i-~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~----~~a~v~ 94 (1051)
|+|++|.|.||+||. +++| .|+|.||+|+|-||||||||+|+|||+||-....+-||+++.|+|..+. +.|.|+
T Consensus 1 M~IkeiiLDGFKSYa~rTvI~~fDp~FNAITGlNGSGKSNILDsICFvLGI~nl~~VRA~nlqeLIyk~GQAGiTkAsVs 80 (1174)
T KOG0933|consen 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDSICFVLGITNLSQVRASNLQELIYKNGQAGITKASVS 80 (1174)
T ss_pred CchhhhhhcchhcceeeeeccCCCcccchhhcCCCCCchHHHHHHHHHHccchHHHHHHHHHHHHHHhcCcccceeEEEE
Confidence 899999999999999 5555 4999999999999999999999999999999999999999999997544 789999
Q ss_pred EEEEecCC---------CceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHhccCchH
Q 001573 95 ISLRGDTK---------EEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVK 165 (1051)
Q Consensus 95 i~~~~~~~---------~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~~~~ 165 (1051)
|+|+|.+. .++|+|+|.|..+|.+.|+|||+.+....++++|..+++++.||.|++.||+|...++|+|.+
T Consensus 81 VvFdNtdk~~SP~G~E~h~EIsVtRqIv~gG~~KylINGh~a~~~~vq~lF~SVqLNvNNP~FLIMQGrITkVLNMKp~E 160 (1174)
T KOG0933|consen 81 VVFDNTDKARSPLGYEHHDEISVTRQIVVGGTNKYLINGHLAQNSKVQDLFCSVQLNVNNPHFLIMQGRITKVLNMKPSE 160 (1174)
T ss_pred EEecCCCcccCCCCcccCCeeEEEEEEEecCceeEEEcCeeCchhHHHHHHHHhcccCCCCceEEecccchhhhcCCcHH
Confidence 99999643 378999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 166 LLEETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKA--------LNVEQEKDVERVRQRAELLEKVESM 237 (1051)
Q Consensus 166 ~~~~~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~l 237 (1051)
.+.++++++|+..|.. +.+.+...++.-+.++.++.. .+..|+.+...+-+|......+..+
T Consensus 161 ILsMvEEAAGTrmye~----------kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l 230 (1174)
T KOG0933|consen 161 ILSMVEEAAGTRMYEN----------KKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERL 230 (1174)
T ss_pred HHHHHHHhhcchhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999764443 334444444444444444433 4455667777777777777777777
Q ss_pred hcccchhchHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhchHhhHHHHHHHHHhhH--------HHHHHHHHHHHHHH
Q 001573 238 KKKLPWLKYDMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDC--------KKLSSLINENSKRR 309 (1051)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 309 (1051)
..-.-..+|-............+.+.+..+..+.+.......++..++.++.+++... ..+...+..+...+
T Consensus 231 ~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~ 310 (1174)
T KOG0933|consen 231 SRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEI 310 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHH
Confidence 6665555555555555555555555555555555555555555555555554444321 11111111111111
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhcCCC-----
Q 001573 310 --------------MDFLEKVDQVGVQVQGKYKEMQELRR-------QEQSRQQRILKAREELAAAELDLQTVPA----- 363 (1051)
Q Consensus 310 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~l~~~~~----- 363 (1051)
......+..+...+......+..... .....++...+....++..++.++.+..
T Consensus 311 tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~ 390 (1174)
T KOG0933|consen 311 TREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSN 390 (1174)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 11111222222222222222222222 2222333333344444444444444332
Q ss_pred ---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHhccCc-
Q 001573 364 ---YEPPHDKIEKLGSQILELGVQANQKRLQKSEKEKILNQNKLTLRQC-------SDRLKDMEDKNNKLLHALRNSGA- 432 (1051)
Q Consensus 364 ---~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~l~~l~~~~~~~~~~l~~~~~- 432 (1051)
-..+..++......+..+...+....-++..++.++...+.+.... ...+..++.+...+...++..++
T Consensus 391 ~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~ 470 (1174)
T KOG0933|consen 391 EDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYK 470 (1174)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2234556666666665555555555544444444444333332222 12223333333333333333221
Q ss_pred ------------------ccHHHHHHHHHHhh--cccC----------CcccccceeEEeeCCcchHHHHHhhhcccccc
Q 001573 433 ------------------ENIFEAYCWLQQHR--HELN----------KEAYGPVLLEVNVSNRAHANYLEDHVGHYIWK 482 (1051)
Q Consensus 433 ------------------~~~~~~~~~l~~~~--~~~~----------~~~~g~~~~~i~~~~~~~~~~ie~~l~~~~~~ 482 (1051)
..+...+..+...- -.|. ..|.|.++.++.++|..|..|++.+.|+.+ .
T Consensus 471 ~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V~G~Va~Li~vkd~~~~tAle~~aGgrL-y 549 (1174)
T KOG0933|consen 471 IGQEEALKQRRAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKVKGLVAKLIKVKDRSYATALETTAGGRL-Y 549 (1174)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccchHHHHHHHHHHHheeCcchHHHHHHHHhcCcc-e
Confidence 11112222222211 1121 236788899999999999999999999865 5
Q ss_pred eEEEechhhHHHHHhhcC-CCCcceEeecCCCCCCCCCCCChHHHH--hcCcceeecccccCcHHHHHHHHhhhCCcccc
Q 001573 483 SFITQDAGDRDFLAKNLK-PFDVPILNYVSNESSRKEPFQISEEMR--ALGISARLDQVFDAPHAVKEVLISQFGLDSSY 559 (1051)
Q Consensus 483 ~~~v~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~l~~l~~~~~~~~~~l~~~~~~~~~~ 559 (1051)
++||++......++.... ..++++++++....... ++......+ .++-...+.+|+.+|+.+.+++..++| .++
T Consensus 550 nvVv~te~tgkqLLq~g~l~rRvTiIPLnKI~s~~~-s~~v~~~ak~v~~~~v~~al~Li~yd~~l~~amefvFG--~tl 626 (1174)
T KOG0933|consen 550 NVVVDTEDTGKQLLQRGNLRRRVTIIPLNKIQSFVL-SPNVLQAAKNVGNDNVELALSLIGYDDELKKAMEFVFG--STL 626 (1174)
T ss_pred eEEeechHHHHHHhhcccccceeEEEechhhhhccC-CHhHHHHHHHhcCchHHHHHHHhcCCHHHHHHHHHHhC--ceE
Confidence 688988888887776433 35677777664321100 111111122 233344567899999999999999998 554
Q ss_pred cCCCcchhhhhHhhhcCcceEEeCCceEEEEeeccCCcceeeeecccCCccccccCChh---------HHHHHHHHHHHH
Q 001573 560 IGSKETDQKADNVAKLGILDFWTPENHYRWSISRYGGHVSASVEPVNQSRLLLCSVDGN---------EIERLRSKKKKL 630 (1051)
Q Consensus 560 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~l 630 (1051)
||. +.+.+..+.+...+. .+.||..|++++|+|.++||+... .+..++.++...
T Consensus 627 Vc~-~~d~AKkVaf~~~i~----------------~rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~ 689 (1174)
T KOG0933|consen 627 VCD-SLDVAKKVAFDPKIR----------------TRSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAI 689 (1174)
T ss_pred Eec-CHHHHHHhhcccccc----------------cceeeecCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 554 444443444322211 235677777788889988886421 122223333333
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 631 EESVDELEESLKSMQTEQ---RLIEDEAAKLQKERE-------------------EIINIVQIEKRKRREMENHINLRKR 688 (1051)
Q Consensus 631 ~~~~~~~~~~l~~l~~~~---~~~~~~~~~l~~~~~-------------------~~~~~l~~~~~~~~~l~~~i~~~~~ 688 (1051)
+.++..++.+|..++..- ..+.+++.-....+. .+...+.....++......+.....
T Consensus 690 q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~ 769 (1174)
T KOG0933|consen 690 QKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCED 769 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333211 111111111111111 1111111111222222122222222
Q ss_pred HHHHHhhc-----ccHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001573 689 KLESIEKE-----DDINTALAKLVDQAADLNIQQFK-------YAIEIKNLLVEIVSCKWSYAEKHMASIEFDAKIRELE 756 (1051)
Q Consensus 689 ~l~~l~~~-----~~~~~~~~~l~~~~~~l~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 756 (1051)
.+..++.. .....++.++..++..+..+.++ .......+..+...+..++...+..+......++.+.
T Consensus 770 ~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~ 849 (1174)
T KOG0933|consen 770 KISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLK 849 (1174)
T ss_pred HHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222211 11111222222222222222221 2222222222233333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H----------Hh------------------
Q 001573 757 FNLKQHEKLALQASLHYEDCKKEVEHCRKHLSDAKRQA-----------E----------SI------------------ 797 (1051)
Q Consensus 757 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~-----------~----------~~------------------ 797 (1051)
.++..+...+.........+..++......+......+ . .+
T Consensus 850 ~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v 929 (1174)
T KOG0933|consen 850 SELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEV 929 (1174)
T ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHH
Confidence 33333333332222222222222222222111111000 0 00
Q ss_pred ------hcCCHHHHHHHhc-------cCCCHHHHHHHHHHHHHhchhcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 798 ------AFITPELEKEFLE-------MPTTIEELEAAIQDNISQANSIF-FLNQNILQEYEHRQRQIEDLSTKQEADKKE 863 (1051)
Q Consensus 798 ------~~~~~e~~~~~~~-------~~~~~~~l~~~i~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 863 (1051)
..+..+....|.. -..++.+...++..++.....+. .+|+.+..-++..+..+..+...+..+...
T Consensus 930 ~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~D 1009 (1174)
T KOG0933|consen 930 EKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKD 1009 (1174)
T ss_pred HHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000011111110 01356777888888888888877 689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcceEEEEeccCCcccccceEEEEEecCCCccccccccccCCc
Q 001573 864 LKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGG 943 (1051)
Q Consensus 864 ~~~l~~~i~~l~~~~~~~~~~~~~~i~~~F~~~f~~l~~~g~~~l~~~~~~~~~~gl~i~v~~~~~~~~~~~~~~~lSGG 943 (1051)
...+...|..+++.....+..++..||..|..+|+.|-||..+.|.+++..-...|++|.|+|+ ..|.-+.+.||||
T Consensus 1010 k~kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IFs~LLPga~AkL~Ppeg~~~~dGLEvkV~~G---~iWKeSL~ELSGG 1086 (1174)
T KOG0933|consen 1010 KSKIKKTIEKLDEKKREELNKAWEKVNKDFGSIFSTLLPGAMAKLEPPEGKTVLDGLEVKVKFG---GIWKESLSELSGG 1086 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCccccccCCCCCccccceEEEEEeC---ccHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999322223356999999995 3466678889999
Q ss_pred hHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC--------CCCCCCCCCe
Q 001573 944 ERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL--------LPDLEYSEAC 1015 (1051)
Q Consensus 944 Ers~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~--------l~~~~~~~~~ 1015 (1051)
+||++||+|+||+..+.|+|||||||||++||-.++..++.+|... ++++|||||+.+. |+.+.|.+++
T Consensus 1087 QRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkth---F~~sQFIVVSLKeGMF~NANvLFrtrF~DG~ 1163 (1174)
T KOG0933|consen 1087 QRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTH---FTHSQFIVVSLKEGMFNNANVLFRTRFVDGV 1163 (1174)
T ss_pred hHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhh---CCCCeEEEEEchhhccccchhhheeeeecCc
Confidence 9999999999999999999999999999999999999999888654 4599999999883 7778899999
Q ss_pred EEEEEecC
Q 001573 1016 SILNIMNG 1023 (1051)
Q Consensus 1016 ~v~~~~~g 1023 (1051)
++++++++
T Consensus 1164 Stv~r~~~ 1171 (1174)
T KOG0933|consen 1164 STVQRTVT 1171 (1174)
T ss_pred eeeeeecc
Confidence 99998876
No 5
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.7e-82 Score=673.67 Aligned_cols=964 Identities=17% Similarity=0.238 Sum_probs=573.4
Q ss_pred ceEEEEEEecccccc-ceEEe-cCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCc----eeEEE
Q 001573 21 GNIIEIELHNFMTFD-HLICK-PGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEE----SGYIK 94 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~-~~~i~-f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~----~a~v~ 94 (1051)
|+|+.|.|.||+||. .+.|+ |+|..|+|||.|||||||++.||+|||.+..+...| .....++|.|+. .|+|+
T Consensus 1 MyIk~ViI~GFrSYrd~tvv~~fSph~NvIVGrNGSGKSNFF~AIrFVLSDey~hLk~-E~R~gLlHEGsG~~V~sA~VE 79 (1200)
T KOG0964|consen 1 MYIKQVIIKGFRSYRDETVVDPFSPHHNVIVGRNGSGKSNFFHAIRFVLSDEYSHLKR-EERQGLLHEGSGAMVMSASVE 79 (1200)
T ss_pred CceEEeeeccchhhccccccCCCCCCcceEecCCCCCchhhHHHhhhhcccchhhcCH-HHHhhhhhcCCCcceEEEEEE
Confidence 899999999999999 55566 999999999999999999999999999998876633 455789998875 69999
Q ss_pred EEEEecC-----CCceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHhccCchHHHHH
Q 001573 95 ISLRGDT-----KEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEE 169 (1051)
Q Consensus 95 i~~~~~~-----~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~~~~~~~~ 169 (1051)
|+|+|++ ++.+++|+|+++. .+..|+++++-|+..++-.+|...|+...||+++++||+|.+++++++.+|+.+
T Consensus 80 IvF~nsdnr~~~~k~Ev~lrRtVGl-KKDeY~lD~k~Vtk~evvnLLESAGFSrsNPYyIV~QGkI~~La~akD~eRL~L 158 (1200)
T KOG0964|consen 80 IVFDNSDNRLPRGKSEVSLRRTVGL-KKDEYFLDNKMVTKGEVVNLLESAGFSRSNPYYIVPQGKINELANAKDSERLEL 158 (1200)
T ss_pred EEEeCcccccCCCCCeEEEEEeecc-cchhhhcccccccHHHHHHHHHhcCcccCCCceEeechhhHHhhcCCcHHHHHH
Confidence 9999864 3589999999988 778999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCcHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhchHHH
Q 001573 170 TEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMK 249 (1051)
Q Consensus 170 ~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 249 (1051)
+.+.+|+..|....+ .-..-+.++...-+++..-+..+++++.+|+.+.++++.|.++....+.++-.++.-.....
T Consensus 159 LkeVaGtrvYeerre---eSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~ 235 (1200)
T KOG0964|consen 159 LKEVAGTRVYEERRE---ESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEI 235 (1200)
T ss_pred HHHhcccchhHHhHH---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHH
Confidence 999999877765554 33345566677777788888888888888888888888888777776666655544444333
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHhhhchhhchHhhHHHHHHHH---------------------HhhHHHHHHH
Q 001573 250 KAEYIAAKEQEKDAK-------KKLDEAANTLHEFSKPIEGKKQEKAIL---------------------DGDCKKLSSL 301 (1051)
Q Consensus 250 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~---------------------~~~~~~~~~~ 301 (1051)
..++..+.......- ..+......+..+..++.+++..+..+ +-++..++.+
T Consensus 236 ~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~ 315 (1200)
T KOG0964|consen 236 NGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQ 315 (1200)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 333333222211111 111111222222222222222222111 1222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-------C-----------
Q 001573 302 INENSKRRMDFLEKVDQVGVQVQGKYKEMQELRRQEQSRQQRILKAREELAAAELDLQTVP-------A----------- 363 (1051)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-------~----------- 363 (1051)
+.............+..+...+.....++..+.-....+..+-......|..++.+...+- .
T Consensus 316 i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwi 395 (1200)
T KOG0964|consen 316 ITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWI 395 (1200)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHH
Confidence 3333333333334445555556666666666655555555555556666665555332211 0
Q ss_pred ----------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Q 001573 364 ----------YEPPHDKIEKLGSQILELGVQANQKRLQKSEKEKILNQNKLTLRQC------------------------ 409 (1051)
Q Consensus 364 ----------~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------------ 409 (1051)
+.+.......++.++..++.++....+++..+...+.....++..+
T Consensus 396 r~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWRE 475 (1200)
T KOG0964|consen 396 RSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWRE 475 (1200)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222222333333333333333333333322222222222221
Q ss_pred ----HHHHHHHHhHHHHHHHHHhccCcccHHHHHHHHHHhhccc-CCcccccceeEEeeCCcchHHHHHhhhcccccceE
Q 001573 410 ----SDRLKDMEDKNNKLLHALRNSGAENIFEAYCWLQQHRHEL-NKEAYGPVLLEVNVSNRAHANYLEDHVGHYIWKSF 484 (1051)
Q Consensus 410 ----~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~g~~~~~i~~~~~~~~~~ie~~l~~~~~~~~ 484 (1051)
+..+..+...+......+.......+...+..+++....| ..+++||++.++.++ +.|..++|...|+ .++++
T Consensus 476 E~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~-~~f~tavEvtaGN-sLF~i 553 (1200)
T KOG0964|consen 476 EKKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVP-NKFKTAVEVTAGN-SLFNI 553 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCC-HHHHhHHhhhccc-ceEEE
Confidence 1112222222222222332222223334444444433333 368999999999985 7888999998876 56789
Q ss_pred EEechhhHHHHHhhcCCCCcceEeecCCCCCCCCCCCChHHHHhcCcceeecccccCcHHHHHHHHhhhCCcccccCCCc
Q 001573 485 ITQDAGDRDFLAKNLKPFDVPILNYVSNESSRKEPFQISEEMRALGISARLDQVFDAPHAVKEVLISQFGLDSSYIGSKE 564 (1051)
Q Consensus 485 ~v~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~~~~~~~~l~~~~~~~~~~i~~~~ 564 (1051)
||++.+.+..++..+...+.+.++|.|.+........++. ..-..++...+.++|.|..++..++| .++||.+.
T Consensus 554 VVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r~v~yp~----~sdaiPli~kl~y~p~fdka~k~Vfg--ktivcrdl 627 (1200)
T KOG0964|consen 554 VVDNDEVATKILRKLNKMKGGRVTFMPLNRLKARDVEYPK----DSDAIPLISKLRYEPQFDKALKHVFG--KTIVCRDL 627 (1200)
T ss_pred EecccHHHHHHHHHHHhccCCeeEEeecccCchhhccCCC----CCCccchHHHhCcchhhHHHHHHHhC--ceEEeccH
Confidence 9999999999998776544455555443321111111110 01113456678899999999999998 55555544
Q ss_pred chhhhhHhhhcCcceEEeCCceEEEEeeccCCcceeeeecccCCccccccCChhH---------HHHHHHHHHHHHHHHH
Q 001573 565 TDQKADNVAKLGILDFWTPENHYRWSISRYGGHVSASVEPVNQSRLLLCSVDGNE---------IERLRSKKKKLEESVD 635 (1051)
Q Consensus 565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~l~~~~~ 635 (1051)
.. +..+...+++ .+||++|.. ....|.++||..... +.....++.+++..+.
T Consensus 628 ~q-a~~~ak~~~l-n~ITl~GDq-----------------vskkG~lTgGy~D~krsrLe~~k~~~~~~~~~~~l~~~L~ 688 (1200)
T KOG0964|consen 628 EQ-ALRLAKKHEL-NCITLSGDQ-----------------VSKKGVLTGGYEDQKRSRLELLKNVNESRSELKELQESLD 688 (1200)
T ss_pred HH-HHHHHHhcCC-CeEEeccce-----------------ecccCCccccchhhhhhHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44 3355555444 455655543 233334444432111 1111223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh-------
Q 001573 636 ELEESLKSMQTEQRLIEDEAAKLQ-------KEREEIINIVQIEKRKRRE-------MENHINLRKRKLESIE------- 694 (1051)
Q Consensus 636 ~~~~~l~~l~~~~~~~~~~~~~l~-------~~~~~~~~~l~~~~~~~~~-------l~~~i~~~~~~l~~l~------- 694 (1051)
.++..+....+++..+...++..+ .....+..++..+..+... ....+..+...+..++
T Consensus 689 ~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e 768 (1200)
T KOG0964|consen 689 EVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFE 768 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333333333333333333332222 2222222222222222211 1122222222222222
Q ss_pred hc----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHH-----HHh
Q 001573 695 KE----------DDINTALAKLVDQAADLNIQQFKYAIEIKNLL---------------VEIVSCKWSYAEK-----HMA 744 (1051)
Q Consensus 695 ~~----------~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~---------------~~~~~~~~~~~~~-----~~~ 744 (1051)
.+ ......+..+..++..+..++..+..+...+. .....+..++..+ ...
T Consensus 769 ~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~e 848 (1200)
T KOG0964|consen 769 SELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQEIGDLNDSSRRSE 848 (1200)
T ss_pred HHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccchhh
Confidence 11 11112333333344444333332222111111 1111122222111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH-------hhcCCHHH
Q 001573 745 SIEFDAKIRELEFNLKQHEKLALQASLHYEDCKKEVEHCRKHLSDAKR-------------QAES-------IAFITPEL 804 (1051)
Q Consensus 745 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~-------~~~~~~e~ 804 (1051)
+.....++.....++.....++..++..+......+......+..+.. ..+. +-...+++
T Consensus 849 l~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~~~~~dKe~Ek~~~rk~~Ll~KreE~ 928 (1200)
T KOG0964|consen 849 LELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKDNINFDKELEKLVRRKHMLLKKREEC 928 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 122222222222222222222332222222222222222221111100 0000 00001122
Q ss_pred HHHH---hccC---------CCHHHHHHHHHHHHHhchhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 805 EKEF---LEMP---------TTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEID 872 (1051)
Q Consensus 805 ~~~~---~~~~---------~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~ 872 (1051)
.+.+ +.+| ....++..++..+..++..++.+|..|.++|....++-+.|....++|......+.+.|.
T Consensus 929 ~ekIr~lG~Lp~daf~ky~~~~~~el~kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~~R~eELd~s~~sI~eLi~ 1008 (1200)
T KOG0964|consen 929 CEKIRELGVLPEDAFEKYQDKKSKELMKKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLKKRQEELDRSKDSILELIT 1008 (1200)
T ss_pred HHHHHhcCCCchHHHHHhccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 2211 2222 368889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhcCCcceEEEEe----c----c---CCccc-----------c-cceEEEEEecCC
Q 001573 873 ALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLD----E----H---ESDFD-----------K-FGILIKVKFRQS 929 (1051)
Q Consensus 873 ~l~~~~~~~~~~~~~~i~~~F~~~f~~l~~~g~~~l~----~----~---~~~~~-----------~-~gl~i~v~~~~~ 929 (1051)
.++.+..+.+..+|..|+++|+.+|..|.|+|.+.+. . + +.+++ . .||.|.|+|+..
T Consensus 1009 vLdqrK~eai~~TFkqV~knFsevF~~LVp~G~a~iim~k~d~~~d~~e~d~~~~~~s~~~~~sv~~ytGIsI~VSFnsk 1088 (1200)
T KOG0964|consen 1009 VLDQRKYEAIDLTFKQVKKNFSEVFSRLVPGGTALIIMRKRDNANDHDEDDGDMDGESNEGKDSVEMYTGISIKVSFNSK 1088 (1200)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCCceeehhhccccccccccccccccccccccccchhhccceeEEEEeecC
Confidence 9999999999999999999999999999999999654 1 0 11121 1 479999999753
Q ss_pred CccccccccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEc--CCC--
Q 001573 930 GQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLT--PKL-- 1005 (1051)
Q Consensus 930 ~~~~~~~~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iT--p~~-- 1005 (1051)
....+.+..||||+||++||||+||||.++|||||+||||||+||+..+..|..++.+++. ++|||+-| |.+
T Consensus 1089 -q~E~~~m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~---~aQFI~TTFRpEll~ 1164 (1200)
T KOG0964|consen 1089 -QGETLEMEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSD---SAQFITTTFRPELLS 1164 (1200)
T ss_pred -ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhh---ccceEeecccHHHHH
Confidence 2346778899999999999999999999999999999999999999999999999888887 79999999 554
Q ss_pred ----CCCCCCCCCeEEEEE
Q 001573 1006 ----LPDLEYSEACSILNI 1020 (1051)
Q Consensus 1006 ----l~~~~~~~~~~v~~~ 1020 (1051)
..++.|.+.++++-+
T Consensus 1165 vAdKfygV~f~nKvS~V~~ 1183 (1200)
T KOG0964|consen 1165 VADKFYGVKFENKVSTVDE 1183 (1200)
T ss_pred HHHhhhceeecccccccee
Confidence 457777777765543
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=1.8e-76 Score=755.65 Aligned_cols=948 Identities=17% Similarity=0.249 Sum_probs=541.6
Q ss_pred eEEEEEEecccccc-ceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCccccccccccccccc-----CCceeEEEE
Q 001573 22 NIIEIELHNFMTFD-HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKR-----GEESGYIKI 95 (1051)
Q Consensus 22 ~i~~l~l~nf~~~~-~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~-----g~~~a~v~i 95 (1051)
+|++|.|.||+||. .++|+|+||+|+|+||||||||||+|||+|||||.+....|+.++.++|+. +...|.|.+
T Consensus 1 ~i~~l~l~nf~s~~~~~~i~f~~~~~~i~G~NGsGKS~ildAi~~~l~~~~~~~~r~~~~~~~i~~~~~~~~~~~~~v~~ 80 (1164)
T TIGR02169 1 YIERIELENFKSFGKKKVIPFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGNEAYVTV 80 (1164)
T ss_pred CeeEEEEeCeeeECCeeEEeecCCeEEEECCCCCCHHHHHHHHHHHhccchhhhhhhhhHHHhhcccccCCCCceEEEEE
Confidence 58999999999999 689999999999999999999999999999999998877888889999987 345799999
Q ss_pred EEEecCCC--ceEEEEEEEec--CCc-ceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHhccCchHHHHHH
Q 001573 96 SLRGDTKE--EHLTIMRKIDT--RNK-SEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEET 170 (1051)
Q Consensus 96 ~~~~~~~~--~~~~i~R~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~~~~~~~~~ 170 (1051)
+|.++++. ..+.|.|++.. +|. +.|++||.+++..++..++..+|+++++| .++.||++..|+.++|.+++.+|
T Consensus 81 ~f~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~~~~~-~~~~qg~~~~~~~~~~~~r~~~~ 159 (1164)
T TIGR02169 81 TFKNDDGKFPDELEVVRRLKVTDDGKYSYYYLNGQRVRLSEIHDFLAAAGIYPEGY-NVVLQGDVTDFISMSPVERRKII 159 (1164)
T ss_pred EEEcCCCCCCCcEEEEEEEEEcCCCCcceEEECCccccHHHHHHHHHHcCCCcCcc-eEEecchHHHHHCCCHHHHHHHH
Confidence 99874322 35888887765 555 78999999999999999999999999987 67889999999999999999999
Q ss_pred HHhhCCCCcHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhchHHHH
Q 001573 171 EKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKK 250 (1051)
Q Consensus 171 ~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 250 (1051)
+.++| +..+..++..+...+..+...+.++...+..++.+++.++++.+...++..+...+....+....
T Consensus 160 ~~~~g----------~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~ 229 (1164)
T TIGR02169 160 DEIAG----------VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELL 229 (1164)
T ss_pred HHHhC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 45667788888888888899999999999999999999999998888888888776666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhchHhhHHHHHHHHHhhHHHHHHHH---------------HHHHHHHHHHHHH
Q 001573 251 AEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLI---------------NENSKRRMDFLEK 315 (1051)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 315 (1051)
..+..+...+..+...+..+...+..+...+..+...+..+...+..+...+ ..+...+..+...
T Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 309 (1164)
T TIGR02169 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERS 309 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444444444444444444333333333333333322222222221 1122222222222
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhcC-------CC-CCCChHHHHH
Q 001573 316 VDQVGVQV-------QGKYKEMQELRRQEQSRQQRILKAR-------EELAAAELDLQTV-------PA-YEPPHDKIEK 373 (1051)
Q Consensus 316 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~l~~~-------~~-~~~l~~~~~~ 373 (1051)
+..+...+ ..+..++..+...+..+..++..+. ..+..++..+... .. +..+...+..
T Consensus 310 ~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 389 (1164)
T TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 2222222222222221222222211 1111111111111 00 0111111222
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----------------------
Q 001573 374 LGSQ-------ILELGVQANQKRLQKSEKEKILNQNKLTLRQCSDRLKDMEDKNNKL----------------------- 423 (1051)
Q Consensus 374 l~~~-------l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~----------------------- 423 (1051)
+..+ +..+..++..+..++..+..++..++..+..+..++..+...+...
T Consensus 390 ~~~~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 469 (1164)
T TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQ 469 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2222222333333333333333333333333222222211111110
Q ss_pred -----HHHHhccCc------c---cHH-------------HHHHHHHHhhcccCCcccccceeEEeeCCcchHHHHHhhh
Q 001573 424 -----LHALRNSGA------E---NIF-------------EAYCWLQQHRHELNKEAYGPVLLEVNVSNRAHANYLEDHV 476 (1051)
Q Consensus 424 -----~~~l~~~~~------~---~~~-------------~~~~~l~~~~~~~~~~~~g~~~~~i~~~~~~~~~~ie~~l 476 (1051)
...+..... . .+. ..+..+.. .. ..+++|+++..+.+. +.|..+|+.++
T Consensus 470 ~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~--~~-~~g~~g~l~dli~v~-~~y~~Aie~~l 545 (1164)
T TIGR02169 470 ELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLK--AS-IQGVHGTVAQLGSVG-ERYATAIEVAA 545 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHh--cC-CCCceecHHHhcCcC-HHHHHHHHHHh
Confidence 000000000 0 000 11111111 11 246788888888885 89999999999
Q ss_pred cccccceEEEechhhHHHHHhhcCCCCcceEeecCCCCCCCCCCCChHHHHhcCcceeecccccCcHHHHHHHHhhhCCc
Q 001573 477 GHYIWKSFITQDAGDRDFLAKNLKPFDVPILNYVSNESSRKEPFQISEEMRALGISARLDQVFDAPHAVKEVLISQFGLD 556 (1051)
Q Consensus 477 ~~~~~~~~~v~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~~~~~~~~l~~~~~~~ 556 (1051)
|+.. .++||++..++..++.+++..+.+..+|.|.+.....+... ......|+.+++.+++.+++.+.+++..++|
T Consensus 546 g~~l-~~ivv~~~~~a~~~i~~l~~~~~gr~tflpl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~lg-- 621 (1164)
T TIGR02169 546 GNRL-NNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDL-SILSEDGVIGFAVDLVEFDPKYEPAFKYVFG-- 621 (1164)
T ss_pred hhhh-CCEEECCHHHHHHHHHHHHhcCCCCeeeccHhhcCCCCCCc-ccccCCCchHHHHHHccCcHHHHHHHHHHCC--
Confidence 9864 67999999999999999987666666665543211110000 1111245556667889999999999999988
Q ss_pred ccccCCCcchhhhhHhhhcCcceEEeCCceEEEEeeccCCcceeeeecccCC-ccccccCChhHHHHHHHHHHHHHHHHH
Q 001573 557 SSYIGSKETDQKADNVAKLGILDFWTPENHYRWSISRYGGHVSASVEPVNQS-RLLLCSVDGNEIERLRSKKKKLEESVD 635 (1051)
Q Consensus 557 ~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~ 635 (1051)
.++||. +.+.+..+.. ..++||++|.+... +|.+++++.. ..+ .++.. .....+..+..++..+..++.
T Consensus 622 ~~~v~~-~l~~a~~~~~---~~~~vTldG~~~~~----~G~~tgG~~~-~~~~~~~~~-~~~~~l~~l~~~l~~l~~~l~ 691 (1164)
T TIGR02169 622 DTLVVE-DIEAARRLMG---KYRMVTLEGELFEK----SGAMTGGSRA-PRGGILFSR-SEPAELQRLRERLEGLKRELS 691 (1164)
T ss_pred CeEEEc-CHHHHHHHhc---CCcEEEeCceeEcC----CcCccCCCCC-CCCCccccc-ccHHHHHHHHHHHHHHHHHHH
Confidence 444444 4444434442 33789999865221 2334333210 111 11111 001233344444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-------HHHHHHHH--------------HHHHHHH
Q 001573 636 ELEESLKSMQTEQRLIEDE-------AAKLQKEREEIINIVQIE-------KRKRREME--------------NHINLRK 687 (1051)
Q Consensus 636 ~~~~~l~~l~~~~~~~~~~-------~~~l~~~~~~~~~~l~~~-------~~~~~~l~--------------~~i~~~~ 687 (1051)
.+...+..+..++..+... +..+..++..+...+..+ ...+..+. ..+..+.
T Consensus 692 ~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~el~~l~~~i~~l~ 771 (1164)
T TIGR02169 692 SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE 771 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333222222222 222222221111111111 11111111 1111111
Q ss_pred HHHHHHhhc-cc------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHH
Q 001573 688 RKLESIEKE-DD------------INTALAKLVDQAADLNIQQFKYAIEIKNLLVEIV-------SCKWSYAEKHMASIE 747 (1051)
Q Consensus 688 ~~l~~l~~~-~~------------~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~ 747 (1051)
..+..++.. .. ....+..+...+..+...+..+...+..+...+. .+...+..+...+..
T Consensus 772 ~~i~~l~~el~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~~~~~~ 851 (1164)
T TIGR02169 772 EDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS 851 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111100 00 0001111222222222222211111111111111 111111111111111
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhcCC-----
Q 001573 748 --------------FDAKIRELEFNLKQHEKLALQASLHYEDCKKEVEHCRKHL-------SDAKRQAESIAFIT----- 801 (1051)
Q Consensus 748 --------------~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~~~----- 801 (1051)
+...+..+...+..+...+..+...+..+...+..+...+ ..+...+..+....
T Consensus 852 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 931 (1164)
T TIGR02169 852 IEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE 931 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111112222222222212111221111111 11111111110000
Q ss_pred --HHHHHHH---hcc---CCCHHHHHHHHHHHHHhchhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 802 --PELEKEF---LEM---PTTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDA 873 (1051)
Q Consensus 802 --~e~~~~~---~~~---~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~ 873 (1051)
..+.... ... ..+...+..++..+..++..++++|..++.+|+.+.++|.++..++.++...+..+...|..
T Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~ 1011 (1164)
T TIGR02169 932 ELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEE 1011 (1164)
T ss_pred HHHHhhhhhhhhhhcccccCCHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0010000 011 23567888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhcCCcceEEEEe-ccCCcccccceEEEEEecCCCccccccccccCCchHHHHHHHH
Q 001573 874 LKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLD-EHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILY 952 (1051)
Q Consensus 874 l~~~~~~~~~~~~~~i~~~F~~~f~~l~~~g~~~l~-~~~~~~~~~gl~i~v~~~~~~~~~~~~~~~lSGGErs~~~lal 952 (1051)
++......|..+|..|+.+|..+|+.|+ ||.+.|. .+++++..+|+.|.|.|++. . ...+..|||||+++++||+
T Consensus 1012 l~~~~~~~f~~~f~~~~~~f~~~~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~lSgge~~~~~la~ 1087 (1164)
T TIGR02169 1012 YEKKKREVFMEAFEAINENFNEIFAELS-GGTGELILENPDDPFAGGLELSAKPKGK-P--VQRLEAMSGGEKSLTALSF 1087 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEecCCCCcccCCeEEEEEcCCC-C--CCcchhcCcchHHHHHHHH
Confidence 9999999999999999999999999998 7777776 46667778999999998643 2 2345679999999999999
Q ss_pred HHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 953 LVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 953 llal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+||+|.+.|+|||||||||+|||+.|+.+++.+|...+. ++|||||||+.
T Consensus 1088 ~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~---~~~~i~~t~~~ 1137 (1164)
T TIGR02169 1088 IFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG---EAQFIVVSLRS 1137 (1164)
T ss_pred HHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC---CCeEEEEECcH
Confidence 999999999999999999999999999999998877654 69999999995
No 7
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.7e-76 Score=641.09 Aligned_cols=982 Identities=17% Similarity=0.199 Sum_probs=532.5
Q ss_pred CCCCceEEEEEEecccccc-ceEE-ecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCc-----
Q 001573 17 DYMPGNIIEIELHNFMTFD-HLIC-KPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEE----- 89 (1051)
Q Consensus 17 ~~~~~~i~~l~l~nf~~~~-~~~i-~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~----- 89 (1051)
.-+-+.|..|.+.||+||+ .+.| +|++.|++|+|||||||||++||+.||||-.+.+. |..+++++||.+.+
T Consensus 80 ~~~RL~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~ki-R~~klS~LIh~S~~~~~l~ 158 (1293)
T KOG0996|consen 80 GGPRLMITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASKI-RSKKLSALIHKSDGHPNLQ 158 (1293)
T ss_pred CCCeeeehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhHH-hHHHHHHHHhccCCCCCCc
Confidence 3455889999999999999 5555 68999999999999999999999999999988776 88899999995542
Q ss_pred eeEEEEEEEecC----------CCceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHh
Q 001573 90 SGYIKISLRGDT----------KEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFA 159 (1051)
Q Consensus 90 ~a~v~i~~~~~~----------~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~ 159 (1051)
+|.|+|.|.--. ++..++|+|+.+++++|.|+|||++.+.+++..+|..-||+.++-.|+|-||.|..++
T Consensus 159 SCsV~vhFq~iiD~~~~~~E~vp~s~~~ItRtA~~~NsSkY~Ingk~as~~~V~~lLk~~gIDleHNRFLILQGEVE~IA 238 (1293)
T KOG0996|consen 159 SCSVEVHFQKIIDKPGGTYEVVPDSEFTITRTAFRDNSSKYYINGKEASFKDVTKLLKSHGIDLEHNRFLILQGEVEQIA 238 (1293)
T ss_pred ceeEEEeeeeeeccCCCceeecCCCeeEEEehhhhCCCceEeECCccccHHHHHHHHHhcCCCCccceeeeehhhHHHHH
Confidence 599999996421 2467999999999999999999999999999999999999999888999999999999
Q ss_pred ccCc-------hHHHHHHHHhhCCCCcHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 160 KLSP-------VKLLEETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLE 232 (1051)
Q Consensus 160 ~~~~-------~~~~~~~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 232 (1051)
.|+| .-++..++.++|+..|....+ ++..++..+..........+.........|+.-....-.|.....
T Consensus 239 ~MKPk~~~e~d~GmLEYLEDIIGT~ry~~~I~---~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~ken 315 (1293)
T KOG0996|consen 239 MMKPKAQTENDEGMLEYLEDIIGTNRYKEPIE---ELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKEN 315 (1293)
T ss_pred hcCCCCCCCCcchHHHHHHHHhcccccchhHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999 568999999999998887654 334444444545555555555555555555555555555555554
Q ss_pred HHHHHhcccchhchHHHHHHHHHHHHHHHHHHHHHHHHHhhhch----------------------hhchHhhHHHHHHH
Q 001573 233 KVESMKKKLPWLKYDMKKAEYIAAKEQEKDAKKKLDEAANTLHE----------------------FSKPIEGKKQEKAI 290 (1051)
Q Consensus 233 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------l~~~~~~~~~~~~~ 290 (1051)
++-.+...+....+.....++....+.+..+...+.+....... +......+..+...
T Consensus 316 el~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~ 395 (1293)
T KOG0996|consen 316 ELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQD 395 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333322222223322222222222222222221110 00011111111111
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----CC
Q 001573 291 LDGDCKKLSSLINENSKRRMDFLEKVDQVGVQVQGKYKEMQELRRQEQSRQQRILKAREELAAAELDLQTVPA-----YE 365 (1051)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-----~~ 365 (1051)
++.+-...++.+..+...+..+.+++......+..+....+.....+...+.++..+.......+..+.+... -.
T Consensus 396 ~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~ 475 (1293)
T KOG0996|consen 396 LEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETE 475 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 1111111111111111222222222222222111111111111222222222222222222222222221110 11
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHH
Q 001573 366 PPHDKIEKLGSQILELGVQANQKRLQ-----------------------------------KSEKEKILNQNKLTLRQCS 410 (1051)
Q Consensus 366 ~l~~~~~~l~~~l~~l~~~~~~~~~~-----------------------------------~~~l~~~~~~~~~~~~~~~ 410 (1051)
.+..++..++.++..+..++.....+ ..+....+..+...+..+.
T Consensus 476 ~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k 555 (1293)
T KOG0996|consen 476 GIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLK 555 (1293)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 22233333333333222222222221 1111222222222222222
Q ss_pred HHHHHHHhHHHHHHHHHh--------------ccC-----cccHHHHHHHHHHh--hcccCCcccccceeEEeeCCcchH
Q 001573 411 DRLKDMEDKNNKLLHALR--------------NSG-----AENIFEAYCWLQQH--RHELNKEAYGPVLLEVNVSNRAHA 469 (1051)
Q Consensus 411 ~~l~~l~~~~~~~~~~l~--------------~~~-----~~~~~~~~~~l~~~--~~~~~~~~~g~~~~~i~~~~~~~~ 469 (1051)
.++.+....+..+..... ++. ...-...+..|.+. .+.+ .+++|.++++-. .|+.|.
T Consensus 556 ~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i-~Gf~GRLGDLg~-Id~kYD 633 (1293)
T KOG0996|consen 556 QELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRI-PGFYGRLGDLGA-IDEKYD 633 (1293)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCC-Cccccccccccc-cchHHH
Confidence 222222222211111110 000 00111122222221 1223 588999886655 478999
Q ss_pred HHHHhhhcccccceEEEechhhHHHHHhhcCCCCcceEeecCCCCCC-----CCCCCChHHHHhcCcceeecccccCc-H
Q 001573 470 NYLEDHVGHYIWKSFITQDAGDRDFLAKNLKPFDVPILNYVSNESSR-----KEPFQISEEMRALGISARLDQVFDAP-H 543 (1051)
Q Consensus 470 ~~ie~~l~~~~~~~~~v~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~l~~l~~~~-~ 543 (1051)
.||.++.+. +.++||++..++..++.+++.+++++.+|...+... ..|... +-.+.++.|++.+. +
T Consensus 634 vAIsTac~~--LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~i~t------penvPRLfDLv~~~d~ 705 (1293)
T KOG0996|consen 634 VAISTACAR--LDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAPITT------PENVPRLFDLVKCKDE 705 (1293)
T ss_pred HHHHHhccc--cceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCCCCC------CCCcchHhhhhccCCH
Confidence 999996554 468999999999999999998888777776544221 112111 11233567888875 8
Q ss_pred HHHHHHHhhhCCcccccCCCcchhhhhHhhhcCc-ceEEeCCceEEEEeeccCCcceeeeecccCCc---cc-cccCChh
Q 001573 544 AVKEVLISQFGLDSSYIGSKETDQKADNVAKLGI-LDFWTPENHYRWSISRYGGHVSASVEPVNQSR---LL-LCSVDGN 618 (1051)
Q Consensus 544 ~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~-~~~~~~~ 618 (1051)
.+.+++-.+++ +++|+.+... +..+.....+ +++||++|.+.-. +|.+|++|.....++ .+ ..+....
T Consensus 706 ~~r~aFYfaLr--dtLV~d~LeQ-AtRiaygk~rr~RVvTL~G~lIe~----SGtmtGGG~~v~~g~mg~~~~~t~~s~~ 778 (1293)
T KOG0996|consen 706 KFRPAFYFALR--DTLVADNLEQ-ATRIAYGKDRRWRVVTLDGSLIEK----SGTMTGGGKKVKGGRMGTSIRVTGVSKE 778 (1293)
T ss_pred HHHHHHHHHHh--hhhhhcCHHH-HHHHhhcCCCceEEEEecceeecc----cccccCCCCcCCCCCCCCccccCCCCHH
Confidence 89998888875 5544444444 4355554444 6899999965322 244444443332221 11 1111112
Q ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 001573 619 EIERLRSKKKKLE--------------ESVDELEESLKSMQT-------EQRLIEDEAAKLQKEREEIINIVQIE---KR 674 (1051)
Q Consensus 619 ~~~~l~~~~~~l~--------------~~~~~~~~~l~~l~~-------~~~~~~~~~~~l~~~~~~~~~~l~~~---~~ 674 (1051)
....+...+.... ..+..++..+..++. ....+...+..+..++.+++...... ..
T Consensus 779 ~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~ 858 (1293)
T KOG0996|consen 779 SVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKK 858 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHH
Confidence 2233322222222 222222222222222 22222222222222222222211000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH--------------
Q 001573 675 KRREMENHINLRKRKLESIEKEDDINTALAKLVD---------------QAADLNIQQFKYAIEIK-------------- 725 (1051)
Q Consensus 675 ~~~~l~~~i~~~~~~l~~l~~~~~~~~~~~~l~~---------------~~~~l~~~~~~~~~~~~-------------- 725 (1051)
....++..+..++.+++.+.+......++.++.. .+.++..++..+...+.
T Consensus 859 ~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~ 938 (1293)
T KOG0996|consen 859 RLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIA 938 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHH
Confidence 1112222233333333333211000111111111 11122222222221111
Q ss_pred -------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 001573 726 -------NLLVEIVSCKWSYAEKHMASIEFDAKIRELEFNLKQHEKLALQASLHYEDCKKEVEHCRKHLSDAK------- 791 (1051)
Q Consensus 726 -------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~------- 791 (1051)
++...+.....++..+...+..+.....++..++.+....+.++...+..+...+........+++
T Consensus 939 k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~ 1018 (1293)
T KOG0996|consen 939 KAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIE 1018 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 111111122222222211111111111111222222222222222222222222222111111111
Q ss_pred -------HHHHHhhcCCHHHHHHH------------hcc---CCCHHH---------HHHHHHHHHHhchhccCCCHHHH
Q 001573 792 -------RQAESIAFITPELEKEF------------LEM---PTTIEE---------LEAAIQDNISQANSIFFLNQNIL 840 (1051)
Q Consensus 792 -------~~~~~~~~~~~e~~~~~------------~~~---~~~~~~---------l~~~i~~l~~~~~~~~~~~~~~~ 840 (1051)
..+.++......+.... ... ....++ +...+.-++.+++.++.++..++
T Consensus 1019 ~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~tE~~~~~~~~~~~~Eeleae~~~~~i~e~i~~lE~~~~~l~~vd~~~i 1098 (1293)
T KOG0996|consen 1019 NKLEAINGELNEIESKIKQPEKELKKLSLCNMTETRPQIELDVESPEELEAEMLEDNINEKIALLEKRVEELREVDLGVI 1098 (1293)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHhhCccccccchhhccccccccCChHHHHhhhcHhhHHHHHHHHHHHHHHhcCCChHHH
Confidence 11111100000000000 000 011222 33456667888888887888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcceEEEEe-ccCCcccccc
Q 001573 841 QEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLD-EHESDFDKFG 919 (1051)
Q Consensus 841 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~F~~~f~~l~~~g~~~l~-~~~~~~~~~g 919 (1051)
.+|......|......+...........+.++.++....+-|+..|.-|+.+...+|+.++.||.+.|. .+..||+..|
T Consensus 1099 ~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~RldEFm~gf~~Is~kLkemYQmIT~GGdAeLElVDslDPFseG 1178 (1293)
T KOG0996|consen 1099 AEYAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIISMKLKEMYQMITLGGDAELELVDSLDPFSEG 1178 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEeeccCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999888776 5777888999
Q ss_pred eEEEEEecCCCccccccccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEE
Q 001573 920 ILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCF 999 (1051)
Q Consensus 920 l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i 999 (1051)
+.|.|.|+. +.|. .+..||||||++++|||+|||+.|.|+||||||||||+||-.|+..|..++.+-.. +.|||
T Consensus 1179 V~FSVrPpK--KSWK-~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTk---NAQFI 1252 (1293)
T KOG0996|consen 1179 VMFSVRPPK--KSWK-NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTK---NAQFI 1252 (1293)
T ss_pred ceEEeeCch--hhhh-hcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhcc---CCeEE
Confidence 999999862 3344 47779999999999999999999999999999999999999999999999998776 99999
Q ss_pred EEcCCC--------CCCCCCCCCeEEEEEecCCC
Q 001573 1000 LLTPKL--------LPDLEYSEACSILNIMNGPW 1025 (1051)
Q Consensus 1000 ~iTp~~--------l~~~~~~~~~~v~~~~~g~~ 1025 (1051)
||+... |-|++..+++|-.+.+|.+.
T Consensus 1253 IISLRnnMFELa~rLvGIYKtdn~Tksvti~~~~ 1286 (1293)
T KOG0996|consen 1253 IISLRNNMFELANRLVGIYKTDNCTKSVTINPVE 1286 (1293)
T ss_pred EEEehhhHHHHHhhheeeEeecCccceeEechhh
Confidence 999772 55777788887776677433
No 8
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.1e-73 Score=618.36 Aligned_cols=943 Identities=17% Similarity=0.227 Sum_probs=536.8
Q ss_pred CceEEEEEEecccccc-ceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCceeEEEEEEE
Q 001573 20 PGNIIEIELHNFMTFD-HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLR 98 (1051)
Q Consensus 20 ~~~i~~l~l~nf~~~~-~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~ 98 (1051)
||+|..|+|.||+||. ++.|-|...||+|+|||||||||+||||.||||..++.. |+..+.|+|+.-...+.|++.|.
T Consensus 1 ~g~L~~lEieNFKSYkGh~~iGPF~~FTaIIGPNGSGKSNlMDAISFVLGekss~L-R~~~lkdLIyg~~i~~~v~l~Y~ 79 (1141)
T KOG0018|consen 1 MGRLLTLEIENFKSYKGHQVIGPFDRFTAIIGPNGSGKSNLMDAISFVLGEKSSHL-RVSHLKDLIYGKPIRKPVTLKYE 79 (1141)
T ss_pred CCceeeeehhccccccCceeecCchhceeeeCCCCCchHHHHHHHHHHhcCCCccc-ccchHHHHhcCCccCCchhheee
Confidence 6899999999999999 777877678999999999999999999999999988766 99999999985556778887776
Q ss_pred ecCCCceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHhccCchHHHHHHHHhhCCCC
Q 001573 99 GDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVGDPQ 178 (1051)
Q Consensus 99 ~~~~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~~~~~~~~~~~~~g~~~ 178 (1051)
- ++|....++|.|. +|+++|.|||..|+.+++..-+..+||-+....+.+.||.|..++..+|.++-.+|+++.|+-.
T Consensus 80 ~-~dg~~~~F~R~I~-~G~seY~IDne~VT~eeY~~eLekinIlVkARNFLVFQGdVE~IA~k~PkElt~LFEEISgSiE 157 (1141)
T KOG0018|consen 80 E-GDGETRRFTRAIN-GGTSEYMIDNEIVTREEYLEELEKINILVKARNFLVFQGDVEKIAGKNPKELTALFEEISGSIE 157 (1141)
T ss_pred c-CCchhhhhhhhhc-CCceeEEEcceeccHHHHHHHHhhcceeeeeeeEEEecChHHHHhccCHHHHHHHHHHHhhhhh
Confidence 5 5788999999998 8999999999999999999999999999888878889999999999999999999999999888
Q ss_pred cHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhchHHHHHHHHHHHH
Q 001573 179 LPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKKAEYIAAKE 258 (1051)
Q Consensus 179 l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 258 (1051)
+...++.+ +.+...+.......-.+...+.....+.+......+.|..+..+....+..+.....-..+........
T Consensus 158 lK~EYeel---K~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~ 234 (1141)
T KOG0018|consen 158 LKPEYEEL---KYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKAND 234 (1141)
T ss_pred hhHHHHHH---HHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhH
Confidence 87777644 445555565666666666666666666666666666666666666666554332222223333334444
Q ss_pred HHHHHHHHHHHHHhhhchhhchHhhHH-------HHHHHHHhhHHHHHHHHHH-------------HHHHHHHHHHHHHH
Q 001573 259 QEKDAKKKLDEAANTLHEFSKPIEGKK-------QEKAILDGDCKKLSSLINE-------------NSKRRMDFLEKVDQ 318 (1051)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 318 (1051)
.+...+.++..+...+..-..++.... ..+..+...+......+.+ ...++......+..
T Consensus 235 els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~ 314 (1141)
T KOG0018|consen 235 ELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDIET 314 (1141)
T ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHH
Confidence 444444444433333333332222222 2222222222222222222 11111112222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCC-------CCCC-----------------------
Q 001573 319 VGVQVQGKYKEMQELRRQEQSRQQRILKAREELAAAEL-DLQTVPA-------YEPP----------------------- 367 (1051)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~~~~-------~~~l----------------------- 367 (1051)
.+.........++.+++++...........++++...+ ....++- +..+
T Consensus 315 ~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~ 394 (1141)
T KOG0018|consen 315 AKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQ 394 (1141)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 22222222222222222222222222222222222222 0001110 0000
Q ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhHHHHHHHHH
Q 001573 368 ------HDKIEKLGSQILELGVQANQKRLQKSEKEKILNQNKLTLRQCSDRLK--------------DMEDKNNKLLHAL 427 (1051)
Q Consensus 368 ------~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~--------------~l~~~~~~~~~~l 427 (1051)
.....+++.++..+...+..+...+..+...+..+......+...+. .+..++...+..+
T Consensus 395 ~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql 474 (1141)
T KOG0018|consen 395 DTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQL 474 (1141)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 00011112222222222222222222221111111111111111111 1112222222222
Q ss_pred hccC---ccc--HHHHHHHHHHhhcccCCcccccceeEEeeCCcchHHHHHhhhcccccceEEEechhhHHHHHhhcCCC
Q 001573 428 RNSG---AEN--IFEAYCWLQQHRHELNKEAYGPVLLEVNVSNRAHANYLEDHVGHYIWKSFITQDAGDRDFLAKNLKPF 502 (1051)
Q Consensus 428 ~~~~---~~~--~~~~~~~l~~~~~~~~~~~~g~~~~~i~~~~~~~~~~ie~~l~~~~~~~~~v~~~~~~~~l~~~l~~~ 502 (1051)
..+. ..+ .......+......| .+|+|.+.++|..+...|..|+..++|.+. .+++|++...+..++.+++..
T Consensus 475 ~das~dr~e~sR~~~~~eave~lKr~f-Pgv~GrviDLc~pt~kkyeiAvt~~Lgk~~-daIiVdte~ta~~CI~ylKeq 552 (1141)
T KOG0018|consen 475 LDASADRHEGSRRSRKQEAVEALKRLF-PGVYGRVIDLCQPTQKKYEIAVTVVLGKNM-DAIIVDTEATARDCIQYLKEQ 552 (1141)
T ss_pred HhhhhhhcccHHHHHHHHHHHHHHHhC-CCccchhhhcccccHHHHHHHHHHHHhccc-ceEEeccHHHHHHHHHHHHHh
Confidence 1100 011 111111222222334 578898888898877889999999999865 789999999999999999999
Q ss_pred CcceEeecCCCCCCCCCCCChHHHHhcCcceeecccccCcHHHHHHHHhhhCCcccccCCCcchhhhhHhhhcCcc-eEE
Q 001573 503 DVPILNYVSNESSRKEPFQISEEMRALGISARLDQVFDAPHAVKEVLISQFGLDSSYIGSKETDQKADNVAKLGIL-DFW 581 (1051)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~v 581 (1051)
+.+..+|.|.+.....|..- .++.+|-...+.|++.+++.|..++..++| +. ++|+..+.+..+....++. ..|
T Consensus 553 r~~~~TFlPld~i~v~~~~e--~lr~~~g~rlv~Dvi~ye~e~eka~~~a~g--n~-Lvcds~e~Ar~l~y~~~~r~k~v 627 (1141)
T KOG0018|consen 553 RLEPMTFLPLDSIRVKPVNE--KLRELGGVRLVIDVINYEPEYEKAVQFACG--NA-LVCDSVEDARDLAYGGEIRFKVV 627 (1141)
T ss_pred ccCCccccchhhhhcCcccc--cccCcCCeEEEEEecCCCHHHHHHHHHHhc--cc-eecCCHHHHHHhhhcccccceEE
Confidence 88888887766443333221 112333355667899999999999999998 44 5566666665666554442 566
Q ss_pred eCCceEEEEeeccCCcceeeeecccCCccccccCC-----hhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Q 001573 582 TPENHYRWSISRYGGHVSASVEPVNQSRLLLCSVD-----GNEIERLRSKKKKLEESVDELEE----------SLKSMQT 646 (1051)
Q Consensus 582 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~l~~~~~~~~~----------~l~~l~~ 646 (1051)
+.+|.+. ..+|+++||+. ...+..|......+..++.++.. .+..++.
T Consensus 628 aldGtl~-----------------~ksGlmsGG~s~~~wdek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~ 690 (1141)
T KOG0018|consen 628 ALDGTLI-----------------HKSGLMSGGSSGAKWDEKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEM 690 (1141)
T ss_pred EeeeeEE-----------------eccceecCCccCCCcCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6666442 22333333321 12333333333333333332222 1222222
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhc----------------
Q 001573 647 EQRLIEDEAAK-------LQKEREEIINIVQ-------IEKRKRREMENHINLRKRKLESIEKE---------------- 696 (1051)
Q Consensus 647 ~~~~~~~~~~~-------l~~~~~~~~~~l~-------~~~~~~~~l~~~i~~~~~~l~~l~~~---------------- 696 (1051)
.+.....++.. ...++......+. .+..++...+..++.++......+..
T Consensus 691 ~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Y 770 (1141)
T KOG0018|consen 691 RLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREY 770 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehH
Confidence 22111111111 1111111111111 11112222222222222222222211
Q ss_pred ------ccHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHH
Q 001573 697 ------DDINTALAKLVDQAADLNIQ-------------------QFKYAIEIKNLLVEIVSCKWSYAEKHMASIE-FDA 750 (1051)
Q Consensus 697 ------~~~~~~~~~l~~~~~~l~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~ 750 (1051)
.....+..+++.++..+..+ ++.++.++..+......+...+.++ .++.. -..
T Consensus 771 ee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~k~ 849 (1141)
T KOG0018|consen 771 EERELQQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKNKS 849 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHHHH
Confidence 00000111111111111111 1111111111111111111111111 00000 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h-------cCCH--------HHHHHHhccC
Q 001573 751 KIRELEFNLKQHEKLALQASLHYEDCKKEVEHCRKHLSDAKRQAESI---A-------FITP--------ELEKEFLEMP 812 (1051)
Q Consensus 751 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~-------~~~~--------e~~~~~~~~~ 812 (1051)
.....+.++.+.+.....+...+..+...+..++..+.........+ + ++.. -..-.+..++
T Consensus 850 ~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d~~~~ieidy~~L~ 929 (1141)
T KOG0018|consen 850 KFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCKLEDIEVPLSSGSMDDIVIGIEIDYSGLP 929 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCccccceeccccccccc
Confidence 12222333333333333344444444444444444333322221110 0 0000 0011233444
Q ss_pred CCHHHHHHHHHHHHHhchhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001573 813 TTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINET 892 (1051)
Q Consensus 813 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~ 892 (1051)
..+. ++.+|++....++.+ ..|..+.+.|+.+. +......++..++.........+.+..+....|..+|+.|+.+
T Consensus 930 ~~y~-L~~kl~e~~~~l~~~-~Pn~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak~~F~~VK~~R~~~F~~~F~~va~~ 1005 (1141)
T KOG0018|consen 930 REYK-LQQKLEEKQSVLNRI-APNLKALERLDEVR--FQEINEEFEAARKEAKKAKNAFNKVKKKRYERFMACFEHVADN 1005 (1141)
T ss_pred HHHH-HHHHHHHHHHHHHHh-CcchHHHhhhhhHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 888899999999888 67889999999998 8999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCc-ceEEEEe-ccCCcccccceEEEEEecCCCccccccccccCCchHHHHHHHHHHHhcccCCCCceEeecc
Q 001573 893 FSRNFQEMAV-AGEVSLD-EHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEI 970 (1051)
Q Consensus 893 F~~~f~~l~~-~g~~~l~-~~~~~~~~~gl~i~v~~~~~~~~~~~~~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEi 970 (1051)
...+|..|++ .|.+.|. +++++|...||.+...|| |+.+++ +..||||||+++|||||||++.+.||||+|||||
T Consensus 1006 Id~IYK~Ltnt~g~AyL~~en~~EPyl~GIky~~~pP-~KRFr~--m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEi 1082 (1141)
T KOG0018|consen 1006 IDRIYKELTNTEGQAYLGLENPEEPYLDGIKYHCMPP-GKRFRP--MDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEI 1082 (1141)
T ss_pred HHHHHHHhcccccceeecCCCCCcchhcCccccccCC-ccccCc--hhhcCccHHHHHHHHHHHHhccCCCCCceehhhH
Confidence 9999999964 3666666 477777788999988874 665554 4569999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 971 NQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 971 d~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
|++||..|+.+|+.++. . ++.||||||.+.
T Consensus 1083 DAALDntNi~kvasyIr--~---~~~Q~IvISLK~ 1112 (1141)
T KOG0018|consen 1083 DAALDNTNIGKVASYIR--S---SNFQFIVISLKE 1112 (1141)
T ss_pred HHHhhhccHHHHHHHHh--c---CCceEEEEeccH
Confidence 99999999999999997 2 489999999883
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=100.00 E-value=1.1e-64 Score=650.77 Aligned_cols=953 Identities=18% Similarity=0.261 Sum_probs=506.9
Q ss_pred eEEEEEEecccccc-ceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCc------eeEEE
Q 001573 22 NIIEIELHNFMTFD-HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEE------SGYIK 94 (1051)
Q Consensus 22 ~i~~l~l~nf~~~~-~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~------~a~v~ 94 (1051)
+|.+|+|.||+||. .++|+|+||+|+|+||||||||||+|||+||||+.++...|+.++.++|+.|+. .+.|+
T Consensus 1 ~i~~l~~~nf~s~~~~~~i~f~~~~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~~~~~~~v~ 80 (1179)
T TIGR02168 1 RLKKLELAGFKSFADPTTINFDKGITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGSETRKPLSLAEVE 80 (1179)
T ss_pred CeeEEEEeCccccCCCeeEEecCCcEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCCcccCCCCeeEEE
Confidence 48999999999997 579999999999999999999999999999999998888899999999999873 68999
Q ss_pred EEEEecC------CCceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHhccCchHHHH
Q 001573 95 ISLRGDT------KEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLE 168 (1051)
Q Consensus 95 i~~~~~~------~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~~~~~~~ 168 (1051)
++|.+.+ +...++|.|++.++|.+.|++||.+++..++..++..+||+++++ +|++||+|..|+.++|.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~-~~~~q~~~~~~~~~~~~~~~~ 159 (1179)
T TIGR02168 81 LVFDNSDGLLPGADYSEISITRRLYRDGESEYFINGQPCRLKDIQDLFLDTGLGKRSY-SIIEQGKISEIIEAKPEERRA 159 (1179)
T ss_pred EEEecCCCCCCCCCCCeEEEEEEEeeCCCceeeECCCcccHHHHHHHHhccCCCcccc-hheecccHHHHHcCCHHHHHH
Confidence 9998642 135699999998888899999999999999999999999999887 799999999999999999999
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhchHH
Q 001573 169 ETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDM 248 (1051)
Q Consensus 169 ~~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 248 (1051)
+|+.++| +..+...+..+..++..+...+..+...+..|+.+.+.++.+..+..++..++..+....+..
T Consensus 160 ~~~~~~~----------~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~ 229 (1179)
T TIGR02168 160 IFEEAAG----------ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELAL 229 (1179)
T ss_pred HHHHHcc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 446667888888999999999999999999999999999999999999999988877777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Q 001573 249 KKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLEKVD-------QVGV 321 (1051)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 321 (1051)
+..++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+. .+..
T Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~ 309 (1179)
T TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 666666666666666555555555555554444444444444433333333333222222222222222 2222
Q ss_pred -------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhcCCC--------CCCChHHHHHHHHHHH
Q 001573 322 -------QVQGKYKEMQELRRQEQSR-------QQRILKAREELAAAELDLQTVPA--------YEPPHDKIEKLGSQIL 379 (1051)
Q Consensus 322 -------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~l~~~~~--------~~~l~~~~~~l~~~l~ 379 (1051)
.+..+..++..+...+... ..++..+...+..+...+..... ...+...+..+..++.
T Consensus 310 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (1179)
T TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222222 22222222222222222211110 1111112222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH-----HHHHhHHHHH-------HHHHhc-------cCc-
Q 001573 380 ELGVQANQKRLQKSEKEKILNQNKLT-------LRQCSDRL-----KDMEDKNNKL-------LHALRN-------SGA- 432 (1051)
Q Consensus 380 ~l~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~l-----~~l~~~~~~~-------~~~l~~-------~~~- 432 (1051)
.+..++..+...+..+..++..+... +..+...+ ..+...+..+ ...+.. ...
T Consensus 390 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 469 (1179)
T TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333 33332221 1111111110 000000 000
Q ss_pred --------ccHHHH-------HHHHH---Hh--------------hcccCCcccccceeEEeeCCcchHHHHHhhhcccc
Q 001573 433 --------ENIFEA-------YCWLQ---QH--------------RHELNKEAYGPVLLEVNVSNRAHANYLEDHVGHYI 480 (1051)
Q Consensus 433 --------~~~~~~-------~~~l~---~~--------------~~~~~~~~~g~~~~~i~~~~~~~~~~ie~~l~~~~ 480 (1051)
..+... ...+. .. ...+ .+++|+....+.+ ++.|..+++..+|...
T Consensus 470 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~v~~~i~v~~~~-~~~~g~~~~li~~-~~~~~~a~~~~~g~~~ 547 (1179)
T TIGR02168 470 LEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL-SGILGVLSELISV-DEGYEAAIEAALGGRL 547 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhccccc-CCCccchhceeee-ChhHHHHHHHHHHHHh
Confidence 000000 00000 00 0001 2355555566665 4789999998888643
Q ss_pred cceEEEechhhHHHHHhhcCCCCcceEeecCCCCCCCCCCC--C-hHHHHhcCcceeecccccCcHHHHHHHHhhhCCcc
Q 001573 481 WKSFITQDAGDRDFLAKNLKPFDVPILNYVSNESSRKEPFQ--I-SEEMRALGISARLDQVFDAPHAVKEVLISQFGLDS 557 (1051)
Q Consensus 481 ~~~~~v~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~g~~~~l~~l~~~~~~~~~~l~~~~~~~~ 557 (1051)
..++|++...+......++....+..++.|.+........ . .......|...++.+++.+++.+..++...++ .
T Consensus 548 -~~ivv~~~~~a~~~~~~l~~~~~g~~~~l~l~~i~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~--~ 624 (1179)
T TIGR02168 548 -QAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLG--G 624 (1179)
T ss_pred -cCeEECCHHHHHHHHHHhcccCCCcEEEeeccccccccccccchhhccccCchhHHHHHHhcccHhHHHHHHHHhC--C
Confidence 4478888777766666666444444444333221110000 0 00111234444555666777777665554444 2
Q ss_pred cccCCCcchhhhhHhhhcCc-ceEEeCCceEEEEeeccCCcceeeeecccCCccccccCChhHHHHHHHHHHHHHHHHHH
Q 001573 558 SYIGSKETDQKADNVAKLGI-LDFWTPENHYRWSISRYGGHVSASVEPVNQSRLLLCSVDGNEIERLRSKKKKLEESVDE 636 (1051)
Q Consensus 558 ~~i~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 636 (1051)
..+|.... .+..+....+. +.+++++|.... .||..+.... .....+.. ....+..+...+..++..+..
T Consensus 625 ~~ivt~l~-~a~~~~~~~~~~g~~v~~~G~~~~----~gg~~~~~~~-~~~~~~~~---l~~e~~~l~~~~~~l~~~l~~ 695 (1179)
T TIGR02168 625 VLVVDDLD-NALELAKKLRPGYRIVTLDGDLVR----PGGVITGGSA-KTNSSILE---RRREIEELEEKIEELEEKIAE 695 (1179)
T ss_pred ceEeCCHH-HHHHHHHHcCCCceEEecCCEEEc----CCceEecCcc-ccccchhh---HHHHHHHHHHHHHHHHHHHHH
Confidence 22333222 23233332222 256666653211 0121111100 00000000 001222333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhh
Q 001573 637 LEESLKSMQTEQRLIEDEAAKLQK-------EREEIINIVQIEKRKRREME--------------NHINLRKRKLESIEK 695 (1051)
Q Consensus 637 ~~~~l~~l~~~~~~~~~~~~~l~~-------~~~~~~~~l~~~~~~~~~l~--------------~~i~~~~~~l~~l~~ 695 (1051)
+...+..+..++..+...+..+.. .+..+...+..+...+..+. .++..+...+..+..
T Consensus 696 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~ 775 (1179)
T TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222222222222222221 11111111111111111111 111111111111110
Q ss_pred c--------cc-------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHH------
Q 001573 696 E--------DD-------INTALAKLVDQAADLNIQQFKYAI-------EIKNLLVEIVSCKWSYAEKHMASIE------ 747 (1051)
Q Consensus 696 ~--------~~-------~~~~~~~l~~~~~~l~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~------ 747 (1051)
. .. ....+..+...+..+..++..+.. .+..+..++..+...+..+...+..
T Consensus 776 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~ 855 (1179)
T TIGR02168 776 ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 000111111111111111111111 1111111111111111111111111
Q ss_pred --------HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhh
Q 001573 748 --------FDAKIRELEFNLK--------------QHEKLALQASLHYEDCKKEVEHCRKHLSDAKR-------QAESIA 798 (1051)
Q Consensus 748 --------~~~~~~~l~~~l~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~ 798 (1051)
+...+..+...+. .+...+..+...+..+...+..+...+..+.. ....+.
T Consensus 856 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~ 935 (1179)
T TIGR02168 856 SLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE 935 (1179)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111 11111111111111111111111111111111 000000
Q ss_pred cCCH----HHHH-------HHhc----cCCCHHHHHHHHHHHHHhchhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 799 FITP----ELEK-------EFLE----MPTTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKE 863 (1051)
Q Consensus 799 ~~~~----e~~~-------~~~~----~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 863 (1051)
.... .+.. .... ....+..+...+..+...++.+..++..+.++|..+..+++++...+..|...
T Consensus 936 ~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~ 1015 (1179)
T TIGR02168 936 VRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEA 1015 (1179)
T ss_pred HHHHHHHHHHHHHhccCHHHHHhhccccccCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000 0001 23345667777777777777777777777778888888888888888888877
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcceEEEEe-ccCCcccccceEEEEEecCCCccccccccccCC
Q 001573 864 LKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLD-EHESDFDKFGILIKVKFRQSGQLEVLSAHHQSG 942 (1051)
Q Consensus 864 ~~~l~~~i~~l~~~~~~~~~~~~~~i~~~F~~~f~~l~~~g~~~l~-~~~~~~~~~gl~i~v~~~~~~~~~~~~~~~lSG 942 (1051)
+..+...+..++.+....|..++..++..|..+|..+++||.+.|. .++++|...|+.|.|.|+ +.. ...+..|||
T Consensus 1016 i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~lS~ 1092 (1179)
T TIGR02168 1016 KETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKLFGGGEAELRLTDPEDLLEAGIEIFAQPP-GKK--NQNLSLLSG 1092 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcccccCceEEEeCC-CCc--cccccccCc
Confidence 7777777777777777777777777778888888888888887776 356678889999999985 332 234667999
Q ss_pred chHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 943 GERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 943 GErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
|++.+++|+++||++.+.|+||+||||+|++||+.+...++.+|...+. ..|||||||+.
T Consensus 1093 g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~---~~~~i~~sh~~ 1152 (1179)
T TIGR02168 1093 GEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK---NTQFIVITHNK 1152 (1179)
T ss_pred cHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc---CCEEEEEEcCh
Confidence 9999999999999999999999999999999999999999998887764 58999999994
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=100.00 E-value=6.7e-49 Score=478.97 Aligned_cols=161 Identities=17% Similarity=0.213 Sum_probs=126.3
Q ss_pred ceEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCceeEEEEEEEec
Q 001573 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1051)
|+|.+|+|.||++|..++|+|+||+|+|+||||||||||++||+|+|||.++. .....++|+.|...+.|+++|.+
T Consensus 1 M~i~~l~l~nf~~~~~~~~~f~~g~~~i~G~Ng~GKStil~ai~~~l~g~~~~---~~~~~~~~~~~~~~~~v~~~f~~- 76 (880)
T PRK02224 1 MRFDRVRLENFKCYADADLRLEDGVTVIHGVNGSGKSSLLEACFFALYGSKAL---DDTLDDVITIGAEEAEIELWFEH- 76 (880)
T ss_pred CeEEEEEEECcccccceEEecCCCeEEEECCCCCCHHHHHHHHHHHhCCCccc---cccHHHHHhCCCCcEEEEEEEEE-
Confidence 89999999999999999999999999999999999999999999999998763 23567899999999999999985
Q ss_pred CCCceEEEEEEEecCCc----ceEE-ECCee--ecHHHHHHHH-HHcCcccccc--ccccccchHHHHhccCchHHHHHH
Q 001573 101 TKEEHLTIMRKIDTRNK----SEWF-FNGKV--VPKGEVLEIT-KRFNIQVNNL--TQFLPQDRVCEFAKLSPVKLLEET 170 (1051)
Q Consensus 101 ~~~~~~~i~R~~~~~~~----~~~~-~~~~~--~~~~~~~~~~-~~~~i~~~~~--~~~l~Q~~~~~~~~~~~~~~~~~~ 170 (1051)
++..|.|.|++.+.|. ..|. .+|.. ....++...+ ..+|++.+.| +.+++||.+..|+.++|.+|..+|
T Consensus 77 -~~~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~llg~~~~~f~~~~~i~Qge~~~~l~~~p~~R~~ii 155 (880)
T PRK02224 77 -AGGEYHIERRVRLSGDRATTAKCVLETPEGTIDGARDVREEVTELLRMDAEAFVNCAYVRQGEVNKLINATPSDRQDMI 155 (880)
T ss_pred -CCEEEEEEEEEecCCCCcccceeEEeCCCccccChHHHHHHHHHHHCCCHHHhcceeEeeccChHHHHcCCHHHHHHHH
Confidence 6789999999876442 2333 23321 1223333332 3457664443 357899999999999999999999
Q ss_pred HHhhCCCCcHHHHHHH
Q 001573 171 EKAVGDPQLPVQHCAL 186 (1051)
Q Consensus 171 ~~~~g~~~l~~~~~~l 186 (1051)
.+++|...|......+
T Consensus 156 ~~l~~l~~~e~~~~~~ 171 (880)
T PRK02224 156 DDLLQLGKLEEYRERA 171 (880)
T ss_pred HHHhCCHHHHHHHHHH
Confidence 9999986655444433
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=100.00 E-value=1.4e-45 Score=451.89 Aligned_cols=166 Identities=20% Similarity=0.223 Sum_probs=130.3
Q ss_pred ceEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCceeEEEEEEEec
Q 001573 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1051)
|+|.+|+|.||+||...+|+|+||+|+|+||||||||||++||+|+|||..+...|+....+|++.|...+.|+++|..
T Consensus 1 m~i~~l~i~nf~~~~~~~i~f~~g~~~i~G~nG~GKStil~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~- 79 (880)
T PRK03918 1 MKIEELKIKNFRSHKSSVVEFDDGINLIIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKDDFTRIGGSGTEIELKFEK- 79 (880)
T ss_pred CeeEEEEEeCccCccCceEecCCCcEEEEcCCCCCHHHHHHHHHHHhcCCCCCCccccChhhcccCCCCCEEEEEEEEE-
Confidence 8999999999999998899999999999999999999999999999998655444555567899999999999999974
Q ss_pred CCCceEEEEEEEecCCcceEEE-CCe---eecHHHHHHHHHH-cCccccccccccccchHHHHhccCchHHHHHHHHhhC
Q 001573 101 TKEEHLTIMRKIDTRNKSEWFF-NGK---VVPKGEVLEITKR-FNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175 (1051)
Q Consensus 101 ~~~~~~~i~R~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~-~~i~~~~~~~~l~Q~~~~~~~~~~~~~~~~~~~~~~g 175 (1051)
+|..|+|.|.+.++ .+.+.+ +|. ..+.+++...+.. ++.+...-+.|++||.+..|+. +|.+|..+|..++|
T Consensus 80 -~~~~~~i~R~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~~~Qg~~~~~~~-~~~~r~~~~~~~~~ 156 (880)
T PRK03918 80 -NGRKYRIVRSFNRG-ESYLKYLDGSEVLEEGDSSVREWVERLIPYHVFLNAIYIRQGEIDAILE-SDESREKVVRQILG 156 (880)
T ss_pred -CCeEEEEEEEEcCC-ceEEEECCCCeeecccHHHHHHHHHHhcCHHHhceeEEEeccchHHHhc-CcHHHHHHHHHHhC
Confidence 68899999999773 333333 442 2344555555543 3333322235789999999986 78999999999999
Q ss_pred CCCcHHHHHHHHHHH
Q 001573 176 DPQLPVQHCALVEKS 190 (1051)
Q Consensus 176 ~~~l~~~~~~l~~~~ 190 (1051)
...|...+..+....
T Consensus 157 ~~~~~~~~~~~~~~~ 171 (880)
T PRK03918 157 LDDYENAYKNLGEVI 171 (880)
T ss_pred CHHHHHHHHHHHHHH
Confidence 888877666544333
No 12
>PRK01156 chromosome segregation protein; Provisional
Probab=100.00 E-value=2.6e-43 Score=428.61 Aligned_cols=197 Identities=20% Similarity=0.238 Sum_probs=149.7
Q ss_pred ceEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCceeEEEEEEEec
Q 001573 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1051)
|+|.+|+|.||+||..++|+|+||+|+|+||||||||||++||+|||||.+. +....++|+.|...++|+++|..
T Consensus 1 M~i~~l~l~NF~s~~~~~i~f~~gi~~I~G~NGsGKSsileAI~~aL~g~~~----~~~~~~~i~~~~~~~~V~l~f~~- 75 (895)
T PRK01156 1 MIIKRIRLKNFLSHDDSEIEFDTGINIITGKNGAGKSSIVDAIRFALFTDKR----TEKIEDMIKKGKNNLEVELEFRI- 75 (895)
T ss_pred CeEEEEEEeCccCCCCceEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc----cccHHHHhhCCCCeEEEEEEEEE-
Confidence 8999999999999999999999999999999999999999999999999753 33568999999999999999985
Q ss_pred CCCceEEEEEEEecCCc-----ceEEECCeeec--HHHHHHHHH--HcCcccccc--ccccccchHHHHhccCchHHHHH
Q 001573 101 TKEEHLTIMRKIDTRNK-----SEWFFNGKVVP--KGEVLEITK--RFNIQVNNL--TQFLPQDRVCEFAKLSPVKLLEE 169 (1051)
Q Consensus 101 ~~~~~~~i~R~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~--~~~i~~~~~--~~~l~Q~~~~~~~~~~~~~~~~~ 169 (1051)
+|..|+|.|.+.+.|. ..|+.||..++ ..++...+. .+|++.+.| +.|++||.+..|+.++|.+|+.+
T Consensus 76 -~g~~y~i~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~il~~~~~~f~~~i~~~Qg~~~~l~~~~~~~r~~~ 154 (895)
T PRK01156 76 -GGHVYQIRRSIERRGKGSRREAYIKKDGSIIAEGFDDTTKYIEKNILGISKDVFLNSIFVGQGEMDSLISGDPAQRKKI 154 (895)
T ss_pred -CCEEEEEEEEEecCCCCCCceEEEecCCeeccccHHHHHHHHHHHHcCCCHHHhceeEEEeccchHHHHhCCHHHHHHH
Confidence 6789999999976332 34667997665 356777664 567765544 35789999999999999999999
Q ss_pred HHHhhCCCCcHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 170 TEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVER 223 (1051)
Q Consensus 170 ~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~ 223 (1051)
|..++|...|...++.+......+..-...+......+..+...+..++.++..
T Consensus 155 ld~~~~~~~~~~~~~~~~~~~~~~~~ei~~le~~~~~l~~~e~eL~~~~~~i~e 208 (895)
T PRK01156 155 LDEILEINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIAD 208 (895)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887776666554444443333333333334444444444444444333
No 13
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.3e-40 Score=397.01 Aligned_cols=161 Identities=26% Similarity=0.393 Sum_probs=130.7
Q ss_pred ceEEEEEEeccccccceEEe--cCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCceeEEEEEEE
Q 001573 21 GNIIEIELHNFMTFDHLICK--PGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLR 98 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~~~~i~--f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~ 98 (1051)
|+|.+|.|.||+||.+.+|. |++|+|+|+||||||||||+|||+|+|||..+..+ +.+..++++.|...+.|+++|.
T Consensus 1 M~i~~L~L~Nf~S~~~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~-~~~~~~~i~~g~~~~~V~l~F~ 79 (908)
T COG0419 1 MKILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLG-AFSLDDLIRAGEKSASVELEFE 79 (908)
T ss_pred CCCeeeehcccccccccceeecCCCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc-chhhhHHHhcCCccEEEEEEEE
Confidence 89999999999999988888 99999999999999999999999999999998554 5577899999998999999999
Q ss_pred ecCCCceEEEEEEEecCCc------ceEEECCeee--cHHHHHHHHH-HcCcccccc--ccccccchHHHHhccCchHHH
Q 001573 99 GDTKEEHLTIMRKIDTRNK------SEWFFNGKVV--PKGEVLEITK-RFNIQVNNL--TQFLPQDRVCEFAKLSPVKLL 167 (1051)
Q Consensus 99 ~~~~~~~~~i~R~~~~~~~------~~~~~~~~~~--~~~~~~~~~~-~~~i~~~~~--~~~l~Q~~~~~~~~~~~~~~~ 167 (1051)
.+|..|.|.|.+.++++ +.-..+|..+ ...++...+. .+|++.+.| +.++|||.+..|+.++|.+|.
T Consensus 80 --~~g~~Y~i~R~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl~~~~~er~ 157 (908)
T COG0419 80 --VNGKKYRIEREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYLPQGEFDAFLKSKPKERK 157 (908)
T ss_pred --ECCEEEEEEeeeccccCCCccchhhcccCcchhhhhhhhHHHHHHHHhCCCHHHHhHHheeccHhHHHHHhcCcHHHH
Confidence 48999999999888444 1112344322 2335555544 678775544 568899999999999999999
Q ss_pred HHHHHhhCCCCcHHHHH
Q 001573 168 EETEKAVGDPQLPVQHC 184 (1051)
Q Consensus 168 ~~~~~~~g~~~l~~~~~ 184 (1051)
.++.+++|...|.....
T Consensus 158 ~il~~l~~l~~~e~~~~ 174 (908)
T COG0419 158 EILDELFGLEKYEKLSE 174 (908)
T ss_pred HHHHHHhCchhHHHHHH
Confidence 99999999776554443
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.1e-36 Score=379.31 Aligned_cols=164 Identities=16% Similarity=0.266 Sum_probs=124.3
Q ss_pred eEEEEEEecccccc-----ceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCccccccccccccccc------CCce
Q 001573 22 NIIEIELHNFMTFD-----HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKR------GEES 90 (1051)
Q Consensus 22 ~i~~l~l~nf~~~~-----~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~------g~~~ 90 (1051)
+|.+|.|.||+||+ .++|+|++|+|+|+||||||||||++||+|||||..+...+|. .||+. +...
T Consensus 2 ~~~kl~i~g~rSf~~~~~~~~~I~F~~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~---~~i~~~~~~~~~~~~ 78 (1311)
T TIGR00606 2 KFLKMSILGVRSFGIEDKDKQIIDFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGN---TFVHDPKVAQETDVR 78 (1311)
T ss_pred ccceeeeeceecCCCccccceeeecccceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCc---eEecCCCcCccHhhh
Confidence 58899999999995 5789999999999999999999999999999999876443432 34532 2347
Q ss_pred eEEEEEEEecCCCceEEEEEEEec--C-C---------cceEEECCeeec----HHHHH-HHHHHcCcccccc--ccccc
Q 001573 91 GYIKISLRGDTKEEHLTIMRKIDT--R-N---------KSEWFFNGKVVP----KGEVL-EITKRFNIQVNNL--TQFLP 151 (1051)
Q Consensus 91 a~v~i~~~~~~~~~~~~i~R~~~~--~-~---------~~~~~~~~~~~~----~~~~~-~~~~~~~i~~~~~--~~~l~ 151 (1051)
+.|.++|.+ .+|..|+|.|.+.. . + ...|+.+|..++ ..++. .+...+|++...| +.|++
T Consensus 79 a~V~l~F~~-~~g~~~~v~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~e~~~~i~~~lGv~~~~f~~vi~~~ 157 (1311)
T TIGR00606 79 AQIRLQFRD-VNGEECAVVRSMVCTQKTKKTEFKTLEGVITRYKHGEKVSLSSKCAEIDREMISHLGVSKAVLNNVIFCH 157 (1311)
T ss_pred heeEEEEEc-CCCCEEEEEeeeeeeeccCcccchhhhhhheecCCCceeeccccHHHHHHHHHHHhCCCHHHHhhceeeC
Confidence 899999964 56788999998843 1 1 134556775433 23554 4566788885544 45789
Q ss_pred cchHHHHhccCchHHHHHHHHhhCCCCcHHHHHHHHHHH
Q 001573 152 QDRVCEFAKLSPVKLLEETEKAVGDPQLPVQHCALVEKS 190 (1051)
Q Consensus 152 Q~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~l~~~~ 190 (1051)
||.+. ++.+.|.++...|++++|+..|....+.+....
T Consensus 158 Qge~~-~~~~~~~~rk~~~d~if~~~~y~k~~~~~~~~~ 195 (1311)
T TIGR00606 158 QEDSN-WPLSEGKALKQKFDEIFSATRYIKALETLRQVR 195 (1311)
T ss_pred Ccccc-cccCChHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 99995 566799999999999999999988776655443
No 15
>PRK04863 mukB cell division protein MukB; Provisional
Probab=100.00 E-value=7.7e-33 Score=334.17 Aligned_cols=286 Identities=13% Similarity=0.092 Sum_probs=161.0
Q ss_pred CCceEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCccc---cc-------ccccccccccC-
Q 001573 19 MPGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLL---GR-------ATSIGAYVKRG- 87 (1051)
Q Consensus 19 ~~~~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~---~r-------~~~~~~~i~~g- 87 (1051)
..++|++|.|.||++|...+|+|++|+++|+|||||||||+|+||+++|++..... +. +..-.++....
T Consensus 3 ~~~ki~~l~l~N~~~~~~~~~~f~~~~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~~~~~~~~~~~r~l~~~l~ 82 (1486)
T PRK04863 3 ERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLK 82 (1486)
T ss_pred CCceeeEEEEecccCccceEEEecCCeEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcccccccccccccchhcccC
Confidence 45899999999999999999999999999999999999999999999996554311 11 00011222111
Q ss_pred CceeEEEEEEEecCCC-ceEEEEEEEecC--Cc---ceEEECCe--------------------eecHHHHHHHHHH-cC
Q 001573 88 EESGYIKISLRGDTKE-EHLTIMRKIDTR--NK---SEWFFNGK--------------------VVPKGEVLEITKR-FN 140 (1051)
Q Consensus 88 ~~~a~v~i~~~~~~~~-~~~~i~R~~~~~--~~---~~~~~~~~--------------------~~~~~~~~~~~~~-~~ 140 (1051)
...+++.++|.++.+. ..+.|.+....+ +. ..|++.|. +.+..++...+.. +|
T Consensus 83 ~~~~Y~~lef~d~~~~~~~~GV~l~~~a~~~~~~~~~~F~i~~~~~~v~~~d~l~~~~~~~~~~~~ti~Elk~~i~e~~G 162 (1486)
T PRK04863 83 AGVCYAALDVVNSRGQRVLVGVRLQQVAGRDRKVDIKPFAIQGLPDSVQPTDLLTETVNERQARVLTLNELKDKAAALEG 162 (1486)
T ss_pred CCceEEEEEEEeCCceEEEEEEEEEeecCCCCCcCceeEEEecCccccChHHHHHHhhcccccccCCHHHHHHHHHHhcC
Confidence 2357778888764222 223333222222 11 12444321 2333455554433 35
Q ss_pred cccccccc-------ccccchHHHHhccCchHHHHHHHHhhCCCCcHHH-------------------------------
Q 001573 141 IQVNNLTQ-------FLPQDRVCEFAKLSPVKLLEETEKAVGDPQLPVQ------------------------------- 182 (1051)
Q Consensus 141 i~~~~~~~-------~l~Q~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~------------------------------- 182 (1051)
.....|+. +++||.+..|+.++ .++-. |..+++...+...
T Consensus 163 l~~~qF~ri~~Y~~~Ll~qG~f~~~L~a~-~dR~k-F~kLf~taiy~~i~~~i~~fl~~yll~e~~~v~~~i~~m~~~l~ 240 (1486)
T PRK04863 163 VQFKQFNSITDYHSLMFDLGIIPRRLRSS-SDRSK-FYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALR 240 (1486)
T ss_pred CceeeeccHHHHHHHHHHCCCchhhhhcc-chHHH-HHHHHHHHHHhhHHHhHHHHHHHHcCCCChhhhHHHHHHHHHHH
Confidence 55433322 56888888777654 33333 2333332211100
Q ss_pred --------------------------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 183 --------------------------------------------HCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQE 218 (1051)
Q Consensus 183 --------------------------------------------~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~ 218 (1051)
.++...++.++.++...+...+.++.++.+.+.+++
T Consensus 241 ~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe 320 (1486)
T PRK04863 241 ENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELN 320 (1486)
T ss_pred HHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011112235667777778888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc--hhchHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhchHhhHHHHHHHHHhhHH
Q 001573 219 KDVERVRQRAELLEKVESMKKKLP--WLKYDMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCK 296 (1051)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 296 (1051)
.++..+++..+...++..+..... ...+......+..+...+......+..+...+..+..++..++.++..+..++.
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777666666666655411 223334444455555555555555555544444444444444444444444444
Q ss_pred HHHHHHHHHH
Q 001573 297 KLSSLINENS 306 (1051)
Q Consensus 297 ~~~~~~~~~~ 306 (1051)
.+...+...+
T Consensus 401 elqqel~elQ 410 (1486)
T PRK04863 401 DYQQALDVQQ 410 (1486)
T ss_pred HHHHHHHHHH
Confidence 4433333333
No 16
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=100.00 E-value=1.2e-32 Score=333.18 Aligned_cols=164 Identities=20% Similarity=0.250 Sum_probs=127.0
Q ss_pred ceEEEEEEecccccc-ceEEecC------CceeEEEcCCCCChHHHHHHHHHHhcCCCcccccc-cccccccccCCceeE
Q 001573 21 GNIIEIELHNFMTFD-HLICKPG------SRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRA-TSIGAYVKRGEESGY 92 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~-~~~i~f~------~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~-~~~~~~i~~g~~~a~ 92 (1051)
|+|.+|+|.||++|. ..+|+|. .|+++|+||||||||||+|||||+|||.++..++. ..+.++++.|...++
T Consensus 1 Mk~~~l~~~nf~s~~~~~~idf~~~~l~~~~l~~I~G~tGaGKStildai~~aLyg~~~r~~~~~~~~~~~~~~~~~~~~ 80 (1047)
T PRK10246 1 MKILSLRLKNLNSLKGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRDTAECL 80 (1047)
T ss_pred CcceEEEeecceeEcCCceEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhcCCCCCccccccchhhhhhCCCcceE
Confidence 899999999999997 7788884 68999999999999999999999999998864443 356889999999999
Q ss_pred EEEEEEecCCCceEEEEEEEec-----CCc-----c-eEEE-CCeee--cHHHHHH-HHHHcCccccccc--cccccchH
Q 001573 93 IKISLRGDTKEEHLTIMRKIDT-----RNK-----S-EWFF-NGKVV--PKGEVLE-ITKRFNIQVNNLT--QFLPQDRV 155 (1051)
Q Consensus 93 v~i~~~~~~~~~~~~i~R~~~~-----~~~-----~-~~~~-~~~~~--~~~~~~~-~~~~~~i~~~~~~--~~l~Q~~~ 155 (1051)
|+++|.. ++..|.|.|.+.+ +|. . .|.+ +|..+ ...++.. +-..+|++.+.|+ .++|||.+
T Consensus 81 v~~~F~~--~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~i~~llgl~~~~F~~~v~l~QG~f 158 (1047)
T PRK10246 81 AEVEFEV--KGEAYRAFWSQNRARNQPDGNLQAPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQF 158 (1047)
T ss_pred EEEEEEE--CCeEEEEEeehhhcccCCCCccccccceeeEcCCCCeeccCchHHHHHHHHHhCCCHHHhhhheeeccccH
Confidence 9999974 5678999886532 221 0 1122 33222 2234444 3446788877764 47799999
Q ss_pred HHHhccCchHHHHHHHHhhCCCCcHHHHHHH
Q 001573 156 CEFAKLSPVKLLEETEKAVGDPQLPVQHCAL 186 (1051)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~l 186 (1051)
..|+.++|.+|..++++++|+..|......+
T Consensus 159 ~~fl~a~~~eR~~il~~l~g~~~y~~~~~~l 189 (1047)
T PRK10246 159 AAFLNAKPKERAELLEELTGTEIYGQISAMV 189 (1047)
T ss_pred HHHHhCChHHHHHHHHHHhCcHHHHHHHHHH
Confidence 9999999999999999999988876554433
No 17
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.3e-32 Score=334.70 Aligned_cols=164 Identities=17% Similarity=0.232 Sum_probs=124.9
Q ss_pred ceEEEEEEecccccc-ceEEecCC--ceeEEEcCCCCChHHHHHHHHHHhcCCCccccccc-ccccccccCCceeEEEEE
Q 001573 21 GNIIEIELHNFMTFD-HLICKPGS--RLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRAT-SIGAYVKRGEESGYIKIS 96 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~-~~~i~f~~--~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~-~~~~~i~~g~~~a~v~i~ 96 (1051)
|+|.+|+|.||+||. ..+|+|++ |+++|+||||||||||+|||||||||.++..++.. .+.++...|+..+.|+++
T Consensus 1 M~~~~L~l~nf~s~~~~~~idF~~~~gl~~I~G~nGaGKSTildAI~~aL~G~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 80 (1042)
T TIGR00618 1 MKPLRLTLKNFGSYKGTHTIDFTALGPIFLICGKTGAGKTTLLDAITYALYGKLPRRSEVIRSLNSLYAAPSEAAFAELE 80 (1042)
T ss_pred CeeeEEEEeCeeccCCCceeeecCCCCeEEEECCCCCCHHHHHHHHHHHhcCCCCCCCccccccchhhcCCCCCeEEEEE
Confidence 899999999999998 56899987 99999999999999999999999999987543322 234445556678899999
Q ss_pred EEecCCCceEEEEEEEec-----CCcceE---EE----CCeee--cHHHHHHHHH-HcCcccccc--ccccccchHHHHh
Q 001573 97 LRGDTKEEHLTIMRKIDT-----RNKSEW---FF----NGKVV--PKGEVLEITK-RFNIQVNNL--TQFLPQDRVCEFA 159 (1051)
Q Consensus 97 ~~~~~~~~~~~i~R~~~~-----~~~~~~---~~----~~~~~--~~~~~~~~~~-~~~i~~~~~--~~~l~Q~~~~~~~ 159 (1051)
|.. +|..|.|.|.+.+ +|...+ .+ +|..+ +..++...+. .+|++++.| +.+++||.+..|+
T Consensus 81 F~~--~g~~y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~llGld~~~F~~~~~l~Qg~~~~fl 158 (1042)
T TIGR00618 81 FSL--GTKIYRVHRTLRCTRSHRKTEQPEQLYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTFTRVVLLPQGEFAQFL 158 (1042)
T ss_pred EEE--CCEEEEEEEeeeeeccCCCCcchhhhhhhhcCCCCcccccchHHHHHHHHHHhCCCHHHHhhheeecccchHHHH
Confidence 974 6788888887653 122111 11 22222 2356666444 688887776 3578999999999
Q ss_pred ccCchHHHHHHHHhhCCCCcHHHHHHH
Q 001573 160 KLSPVKLLEETEKAVGDPQLPVQHCAL 186 (1051)
Q Consensus 160 ~~~~~~~~~~~~~~~g~~~l~~~~~~l 186 (1051)
.++|.+|..+|++++|+..|......+
T Consensus 159 ~a~~~eR~~il~~l~g~~~y~~~~~~~ 185 (1042)
T TIGR00618 159 KAKSKEKKELLMNLFPLDQYTQLALME 185 (1042)
T ss_pred hCCHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 999999999999999988877655433
No 18
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.6e-31 Score=283.11 Aligned_cols=187 Identities=18% Similarity=0.180 Sum_probs=153.6
Q ss_pred CCHHHHHHHHHHHHHhchhccCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001573 813 TTIEELEAAIQDNISQANSIFFLN--QNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQIN 890 (1051)
Q Consensus 813 ~~~~~l~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~ 890 (1051)
+++.++...+..+..+++.+.... ..+..++..++.++.+....|..+.-....+.+.|..+++...+.+...+..
T Consensus 788 ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~rlP~vi~~A~~-- 865 (984)
T COG4717 788 EEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERRLPAVIQEASE-- 865 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH--
Confidence 456677777788888888876433 4788899999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHhcCCcceEEEEeccCCcccccceEEEEEecCCCccccccccccCCchHHHHHHHHHHHhcc----cCCCCceE
Q 001573 891 ETFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQD----LTNCPFRV 966 (1051)
Q Consensus 891 ~~F~~~f~~l~~~g~~~l~~~~~~~~~~gl~i~v~~~~~~~~~~~~~~~lSGGErs~~~lalllal~~----~~~~Pf~v 966 (1051)
+|..++.|-+-.+.... ..-.|+|..+.|+ ...+..||.|.+-++.+|++||+.. ..|-|| |
T Consensus 866 -----~F~hlT~G~Yt~Iy~~e-----~~d~I~V~~~~G~---~~~~~ELSqgT~EQLYlAlRfali~~~~~~~~LP~-i 931 (984)
T COG4717 866 -----FFMHLTDGRYTGIYTQE-----DKDSIIVEHRAGG---SKLAEELSQGTKEQLYLALRFALIHEVRTREPLPF-I 931 (984)
T ss_pred -----HHhhccCCceeeeeccc-----CCceeEEEecccc---cccHHHHhhhHHHHHHHHHHHHHHhhhccCCCCCe-e
Confidence 99999999998887222 1245789988776 3456779999999999999999754 467788 8
Q ss_pred eeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC-CC-CCCCCCCeEEE
Q 001573 967 VDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL-LP-DLEYSEACSIL 1018 (1051)
Q Consensus 967 lDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~-l~-~~~~~~~~~v~ 1018 (1051)
+|++++++|+.+..+++.+|.+++. +.|+|+||+|. .- ..+-++.++++
T Consensus 932 ~DD~fVhFD~~R~~r~~e~l~dls~---~~QviYFTCHe~~~d~~~s~~vI~l~ 982 (984)
T COG4717 932 ADDIFVHFDDERAKRMLELLADLSE---GNQVIYFTCHEHTCDAFPSSEVITLH 982 (984)
T ss_pred eccchhccCHHHHHHHHHHHHHhcc---CCeEEEEEechhhhcccccccceeec
Confidence 8999999999999999999998876 99999999773 22 23444555554
No 19
>PF13514 AAA_27: AAA domain
Probab=100.00 E-value=6.2e-30 Score=314.78 Aligned_cols=189 Identities=15% Similarity=0.183 Sum_probs=142.4
Q ss_pred CCHHHHHHHHHHHHHhchhccCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001573 813 TTIEELEAAIQDNISQANSIFFLN--QNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQIN 890 (1051)
Q Consensus 813 ~~~~~l~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~ 890 (1051)
..+..+...+..++..+..+.... ..+..+++....++.....+|..+.....-+...+..++....+.+...+..
T Consensus 910 ~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r~~~~p~vl~~As~-- 987 (1111)
T PF13514_consen 910 EELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEELAEEWAALRLAAELLEEAIERYREERQPPVLARASE-- 987 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--
Confidence 344455555555666666665433 2567788888999999999999999999999999999988888877766665
Q ss_pred HHHHHHHhcCCcceEEEEeccCCcccccceEEEEEecCCCccccccccccCCchHHHHHHHHHHHhcc-----cCCCCce
Q 001573 891 ETFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQD-----LTNCPFR 965 (1051)
Q Consensus 891 ~~F~~~f~~l~~~g~~~l~~~~~~~~~~gl~i~v~~~~~~~~~~~~~~~lSGGErs~~~lalllal~~-----~~~~Pf~ 965 (1051)
+|..|++|.+..|..+ ++..+..+.|...+|. .+++..||+|.+..++|||+||+.. ..|.||
T Consensus 988 -----~f~~LT~G~Y~~l~~d---~d~~~~~l~~~~~~G~---~~~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~- 1055 (1111)
T PF13514_consen 988 -----YFSRLTGGRYSRLRVD---EDGDKPVLVVVRADGE---RVPVEELSRGTRDQLYLALRLALAELLAEQGEPLPF- 1055 (1111)
T ss_pred -----HHHHHhCCCCceeeec---cccCcccceEEecCCe---EeeHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcE-
Confidence 9999999988776622 2222333455555554 5677789999999999999999643 467777
Q ss_pred EeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC-----CCCCCCCCCeEEEE
Q 001573 966 VVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL-----LPDLEYSEACSILN 1019 (1051)
Q Consensus 966 vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~-----l~~~~~~~~~~v~~ 1019 (1051)
|+||+++++|+.+...++..|.+++. .+||||||||. ...+ +.+.+.||.
T Consensus 1056 IlDD~fvnfDd~R~~~~l~~L~~ls~---~~QVI~FTch~~l~~~a~~~-~~~~v~v~~ 1110 (1111)
T PF13514_consen 1056 ILDDIFVNFDDERARAALELLAELSR---RRQVIYFTCHEHLVELAREV-FGDRVNVHE 1110 (1111)
T ss_pred EeeCCccccCHHHHHHHHHHHHHhcc---CCeEEEEeccHHHHHHHHHh-cCCCCceee
Confidence 88999999999999999999999887 88999999992 2223 556677763
No 20
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=100.00 E-value=1e-25 Score=278.02 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=68.6
Q ss_pred ccccCCchHHHHHHHHHHH----hccc----CCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC
Q 001573 937 AHHQSGGERSVSTILYLVS----LQDL----TNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPD 1008 (1051)
Q Consensus 937 ~~~lSGGErs~~~lallla----l~~~----~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~ 1008 (1051)
++.|||||+.+++...+|| .|.. .+-++++|||+++++|+.+...++..|..+ +.|||++||.+--.
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l-----~~~~i~~s~~~Wg~ 1319 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL-----DLDFVMTSEREWGC 1319 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh-----CCCEEEEccchhcc
Confidence 5779999999998655555 3331 233478999999999999999999888765 78999999998777
Q ss_pred CCCCCCeEEEEEecCCCCC
Q 001573 1009 LEYSEACSILNIMNGPWIE 1027 (1051)
Q Consensus 1009 ~~~~~~~~v~~~~~g~~~~ 1027 (1051)
.+-+|++.|+.++-+|.++
T Consensus 1320 Y~tVp~laI~el~R~~~~~ 1338 (1353)
T TIGR02680 1320 YPEVPGLAICQLLRPDGVD 1338 (1353)
T ss_pred ccCCCcceEEEEecCCCCC
Confidence 7788999999877665544
No 21
>PRK10869 recombination and repair protein; Provisional
Probab=100.00 E-value=1.3e-30 Score=291.23 Aligned_cols=184 Identities=17% Similarity=0.207 Sum_probs=138.6
Q ss_pred eEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCceeEEEEEEEecC
Q 001573 22 NIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGDT 101 (1051)
Q Consensus 22 ~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~~ 101 (1051)
+|.+|+|.||++|..++|+|+||+|+|+||||||||+|++||.|+||+.+ ..++|++|...|.|+++|...+
T Consensus 1 ML~~L~I~nf~~i~~~~i~f~~glnvitGetGaGKS~ildAi~~llG~r~--------~~~~ir~g~~~a~Ve~~F~~~~ 72 (553)
T PRK10869 1 MLAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGRA--------EASMVRPGATRADLCARFSLKD 72 (553)
T ss_pred CccEEEEcccccceeeEEecCCCcEEEECCCCCChHHHHHHHHHHhCCCc--------ccccccCCCCcEEEEEEEecCC
Confidence 47899999999999999999999999999999999999999999998743 2588999999999999997522
Q ss_pred --------------CCceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHhccCchHHH
Q 001573 102 --------------KEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLL 167 (1051)
Q Consensus 102 --------------~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~~~~~~ 167 (1051)
++..++|+|.+.++|++.|+|||.+++...+..+...+ + .+.+|+. ...-++|...+
T Consensus 73 ~~~~~~~l~~~~~~~~~~~~i~R~i~~~g~s~~~INg~~v~~~~l~~l~~~l-i------~ihgQ~~--~~~ll~~~~~~ 143 (553)
T PRK10869 73 TPAALRWLEDNQLEDGNECLLRRVISSDGRSRGFINGTPVPLSQLRELGQLL-I------QIHGQHA--HQLLLKPEHQK 143 (553)
T ss_pred ChHHHHHHHhcCCCCCCeEEEEEEEecCCcceEEECCeeccHHHHHHHHHhh-h------heeCcCh--HHHhcCHHHHH
Confidence 23579999999999999999999999999999987654 3 3445553 33448999999
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 168 EETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVR 225 (1051)
Q Consensus 168 ~~~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~ 225 (1051)
.+++..+|.. .....+......|..+...+..+.........+++.++-++++++
T Consensus 144 ~lLD~~~~~~---~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~ 198 (553)
T PRK10869 144 TLLDAYANET---SLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELN 198 (553)
T ss_pred HHHHHhcccH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999988852 233333344455555555555554444444444444444444333
No 22
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.97 E-value=6.6e-27 Score=248.02 Aligned_cols=188 Identities=19% Similarity=0.224 Sum_probs=143.5
Q ss_pred CCHHHHHHHHHHHHHhchhccCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001573 813 TTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLST---KQEADKKELKRFLAEIDALKEKWLPTLRNLVAQI 889 (1051)
Q Consensus 813 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i 889 (1051)
..++.+..++..+..-..+|+...+.+.+..+++.+++..+.. ....|+.....+...+...-..+..........+
T Consensus 297 ~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L 376 (557)
T COG0497 297 NRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKEL 376 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665555666666666666665543 3455555666666666666666666667777777
Q ss_pred HHHHHHHHhcCCc-ceEEEEeccCC--cccccc---eEEEEEecCCCccccccccccCCchHHHHHHHHHHHhcccCCCC
Q 001573 890 NETFSRNFQEMAV-AGEVSLDEHES--DFDKFG---ILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCP 963 (1051)
Q Consensus 890 ~~~F~~~f~~l~~-~g~~~l~~~~~--~~~~~g---l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lalllal~~~~~~P 963 (1051)
.......++.|.+ .+.+.+...+. ++...| ++|.+++++|.+++|+ .+..||||-|+++|||..++......|
T Consensus 377 ~~~v~~eL~~L~Me~a~F~ve~~~~~~~~t~~G~d~VeF~istNpG~~~~PL-~KvASGGELSRimLAlk~i~~~~~~~p 455 (557)
T COG0497 377 EKEVTAELKALAMEKARFTVELKPLEESPTADGADKVEFLISTNPGEPLKPL-AKVASGGELSRIMLALKVILSRKDDTP 455 (557)
T ss_pred HHHHHHHHHhcCCCCceEEEEeccCCCCCCcCCcceEEEEEeCCCCCCCccH-HhhcchhHHHHHHHHHHHHHhccCCCC
Confidence 7777778999965 56666652222 134556 8899999999999999 677999999999999999999999999
Q ss_pred ceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCC
Q 001573 964 FRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPK 1004 (1051)
Q Consensus 964 f~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~ 1004 (1051)
.+||||||+|+.+.....|++.|.+++. ++|||||||.
T Consensus 456 tlIFDEVD~GIsG~~A~aVg~~L~~Ls~---~~QVl~VTHl 493 (557)
T COG0497 456 TLIFDEVDTGISGRVAQAVGKKLRRLSE---HHQVLCVTHL 493 (557)
T ss_pred eEEEecccCCCChHHHHHHHHHHHHHhc---CceEEEEecH
Confidence 9999999999999999999999999987 9999999987
No 23
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.97 E-value=2e-23 Score=238.39 Aligned_cols=164 Identities=17% Similarity=0.289 Sum_probs=122.9
Q ss_pred CceEEEEEEecccccc---ceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCC------ce
Q 001573 20 PGNIIEIELHNFMTFD---HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGE------ES 90 (1051)
Q Consensus 20 ~~~i~~l~l~nf~~~~---~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~------~~ 90 (1051)
|-.|.+|.|.|.+||+ ..+|.|..++|+|+||||||||||+.++.++..|..|.+.++ ..|||.+. ..
T Consensus 1 Ms~i~klsI~GIRSf~~~d~~~i~F~sPlTLIvG~NG~GKTTiIEcLKyatTG~lPpnsk~---~~FiHdpkIage~ev~ 77 (1294)
T KOG0962|consen 1 MSSIDKLSIRGIRSFDDKDRNTIEFFSPLTLIVGANGTGKTTIIECLKYATTGELPPNSKG---GSFIHDPKVAGETEVR 77 (1294)
T ss_pred CchhHhhHhhcccccCCcccceeeecCCeeeEecCCCCCchhHHHHHHHHhcCcCCCCCcC---CCCCCCccccchhhhh
Confidence 4578899999999999 567999877999999999999999999999999999887774 57887543 35
Q ss_pred eEEEEEEEecCCCceEEEEEEEecCC-----------cceEEEC-Ceeec----HHHHH-HHHHHcCcc--ccccccccc
Q 001573 91 GYIKISLRGDTKEEHLTIMRKIDTRN-----------KSEWFFN-GKVVP----KGEVL-EITKRFNIQ--VNNLTQFLP 151 (1051)
Q Consensus 91 a~v~i~~~~~~~~~~~~i~R~~~~~~-----------~~~~~~~-~~~~~----~~~~~-~~~~~~~i~--~~~~~~~l~ 151 (1051)
|.|.+.|.+ .+|..++++|++.-.. +.-+.++ |..++ -.++. .+...+|+. +-++|.|+.
T Consensus 78 AqvkL~f~~-~~G~~~~~~R~~qlt~k~~~~~~ktles~~~~~~~g~k~tlS~r~~d~d~~~~~~lGVskAIl~~VIFcH 156 (1294)
T KOG0962|consen 78 AQVKLAFTD-VNGETMICTRTIQLTQKRTKMEFKTLESVIWAINDGDRVTLSGRSADLDAEMPLHLGVSKAILENVIFCH 156 (1294)
T ss_pred heeeeeeec-CCCcEEEeehhhHHHHHHHHHHHHHHhhhheeeecCccccccchhhhhhHHHHHhcCCcHHHHhhhheec
Confidence 999999987 6789999999986421 1223333 43332 12333 455688887 567788999
Q ss_pred cchHHHHhccCchHHHHHHHHhhCCCCcHHHHHHHHH
Q 001573 152 QDRVCEFAKLSPVKLLEETEKAVGDPQLPVQHCALVE 188 (1051)
Q Consensus 152 Q~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~l~~ 188 (1051)
|+...+.+ ..|..+..-|..+++.+.|....+.+.+
T Consensus 157 QEdS~WPL-sEp~~LKkkfD~IF~~tky~KAld~~kk 192 (1294)
T KOG0962|consen 157 QEDSTWPL-SEPKNLKKKFDDIFSATKYTKALDSLKK 192 (1294)
T ss_pred ccCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98876655 5677777788888887777766555443
No 24
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.97 E-value=1.1e-29 Score=255.31 Aligned_cols=123 Identities=28% Similarity=0.479 Sum_probs=103.0
Q ss_pred eEEEEEEeccccc--cceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCccccccccccccccc-----CCceeEEE
Q 001573 22 NIIEIELHNFMTF--DHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKR-----GEESGYIK 94 (1051)
Q Consensus 22 ~i~~l~l~nf~~~--~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~-----g~~~a~v~ 94 (1051)
+|.+|+|.||++| ...+++|+|++|+|+||||||||||++||.||||+.+.+..|.....++|+. ....|.|+
T Consensus 1 ~I~~l~i~nFr~~~~~~~~~~~~~~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~ 80 (220)
T PF02463_consen 1 MIKSLEIENFRNFKGKNAELSFSPGLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVE 80 (220)
T ss_dssp EEEEEEEESBTTC-SCEEEEETTSSEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEE
T ss_pred CccEEEEcCceEEecCeEEEecCCCCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Confidence 5899999999999 5889999999999999999999999999999999988888898899999987 45679999
Q ss_pred EEEEecCC-----CceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCcccc
Q 001573 95 ISLRGDTK-----EEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVN 144 (1051)
Q Consensus 95 i~~~~~~~-----~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 144 (1051)
+.|.+.+. ...+.|.|.+.+++.+.|++|+.+++.+++..++...++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~ 135 (220)
T PF02463_consen 81 LIFDNSDEEFELDKKEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE 135 (220)
T ss_dssp EEEECTTEESSSSSSEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99986432 256999999999888999999999999999999888777544
No 25
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.97 E-value=1.4e-27 Score=277.69 Aligned_cols=263 Identities=17% Similarity=0.229 Sum_probs=173.7
Q ss_pred CceEEEEEEeccccccc--eEEecC-CceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccc-cCCceeEEEE
Q 001573 20 PGNIIEIELHNFMTFDH--LICKPG-SRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVK-RGEESGYIKI 95 (1051)
Q Consensus 20 ~~~i~~l~l~nf~~~~~--~~i~f~-~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~-~g~~~a~v~i 95 (1051)
||+|++|+|.||+||+. ++|+|+ +|+|+|+||||||||||++||+|||||.+... ....+++. .+...+.|++
T Consensus 1 ~~~~~~l~l~nf~s~~~~~~~i~f~~~g~~~i~G~NG~GKStll~aI~~~l~G~~~~~---~~~~~~~~~~~~~~~~v~l 77 (562)
T PHA02562 1 MLKFKKIRYKNILSVGNQPIEIQLDKVKKTLITGKNGAGKSTMLEALTFALFGKPFRD---IKKGQLINSINKKDLLVEL 77 (562)
T ss_pred CceEEEEEEEcccccCCCceEEEEcCCCEEEEECCCCCCHHHHHHHHHHHHcCCCcCc---CCHHHhhccCCCCcEEEEE
Confidence 79999999999999983 589998 69999999999999999999999999987633 23345664 4556789999
Q ss_pred EEEecCCCceEEEEEEEecCCcceEEECCeee----cHHHHHHHHH-HcCccccccc--cccccchHHHHhccCchHHHH
Q 001573 96 SLRGDTKEEHLTIMRKIDTRNKSEWFFNGKVV----PKGEVLEITK-RFNIQVNNLT--QFLPQDRVCEFAKLSPVKLLE 168 (1051)
Q Consensus 96 ~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~i~~~~~~--~~l~Q~~~~~~~~~~~~~~~~ 168 (1051)
+|.. ++..|.|.|.+.. +...++.||.++ +..++...+. .+|++...|. .++|||.+..|+.++|.++..
T Consensus 78 ~f~~--~~~~y~i~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~f~~~v~l~q~~f~~f~~~~~~er~~ 154 (562)
T PHA02562 78 WFEY--GEKEYYIKRGIKP-NVFEIYCNGKLLDESASSKDFQKYFEQMLGMNYKSFKQIVVLGTAGYVPFMQLSAPARRK 154 (562)
T ss_pred EEEE--CCEEEEEEEeccC-CeEEEecCCEEEeccccHHHHHHHHHHHHCCCHHHHhHHheeccCchhhHhcCChHhHHH
Confidence 9985 6789999998754 445567788764 3456766665 4677766653 357999999999999999999
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhchHH
Q 001573 169 ETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDM 248 (1051)
Q Consensus 169 ~~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 248 (1051)
++.+++|...|..... ..+..+.+.+..+..+...+..+...+..++..+..++.... .....
T Consensus 155 il~~l~~~~~~~~~~~---~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~--------------~~i~~ 217 (562)
T PHA02562 155 LVEDLLDISVLSEMDK---LNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG--------------ENIAR 217 (562)
T ss_pred HHHHHhCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--------------HHHHH
Confidence 9999999775544332 234445555666666666666665555555555554443221 11233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhchHhhHHHHHHHHHhhHHHHHHHHHHH
Q 001573 249 KKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINEN 305 (1051)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (1051)
+..++..+......++.++..++.++..+...+......+..++..+..+...+..+
T Consensus 218 l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~ 274 (562)
T PHA02562 218 KQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQF 274 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333333333443343333333333
No 26
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.97 E-value=1.1e-24 Score=252.66 Aligned_cols=157 Identities=23% Similarity=0.312 Sum_probs=105.8
Q ss_pred ceEEEEEEecccccc-ceEEecC----CceeEEEcCCCCChHHHHHHHHHHhcCCCcc-ccccc-ccccc----ccc---
Q 001573 21 GNIIEIELHNFMTFD-HLICKPG----SRLNLVIGPNGSGKSSLVCAIALALGGDTQL-LGRAT-SIGAY----VKR--- 86 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~-~~~i~f~----~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~-~~r~~-~~~~~----i~~--- 86 (1051)
|+|.+|+|.||++|. ...|+|+ +++++|+|||||||||+++||+|||||..+. .+|+. +..+| ++.
T Consensus 1 M~i~~l~l~nf~~~~~~~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~LyG~~~~~~~~~~~~y~~~l~~~~n~~~~ 80 (650)
T TIGR03185 1 MIILQLTLENFGPYRGRQTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQLALYGKRALCSGRGNKSYEQYLRGLINRQAG 80 (650)
T ss_pred CcccEEEEeceEEEcCCceeeeecCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccccccCCccCcHHHHHHHHhcccCC
Confidence 899999999999997 4456554 4699999999999999999999999998764 33433 23333 332
Q ss_pred CCceeEEEEEEEecCCC--ceEEEEEEEecCC---cceE--EECCeeec--HHHHHHHHHH-cCccccccccccccchHH
Q 001573 87 GEESGYIKISLRGDTKE--EHLTIMRKIDTRN---KSEW--FFNGKVVP--KGEVLEITKR-FNIQVNNLTQFLPQDRVC 156 (1051)
Q Consensus 87 g~~~a~v~i~~~~~~~~--~~~~i~R~~~~~~---~~~~--~~~~~~~~--~~~~~~~~~~-~~i~~~~~~~~l~Q~~~~ 156 (1051)
+...+.|+++|....++ ..|+|.|.|..++ +..+ +.+|.+.. .....+++.. ++..+.++ ||++..++.
T Consensus 81 ~~~~~~V~l~f~~~~~~~~~~y~i~R~w~~~~k~~~~~l~v~~~~~~~~~~~~~~~~~i~~ilp~~~~~~-FfFDGE~I~ 159 (650)
T TIGR03185 81 KTNPASITLTFSVVEGGKRHEYTLVRSWHINNKDVKEKLTVYKDDEEDDSLNDIWDEFINELLPLELADL-FFFDGEKIE 159 (650)
T ss_pred CCCCeEEEEEEEEccCCceEEEEEEEEecCCCCCCCCcEEEEECCcccchhhHHHHHHHHHhCCHhHHHH-hcccHHHHH
Confidence 23568999999864433 5688999986432 2222 34552211 1234445553 34445554 788888899
Q ss_pred HHhcc--CchHHHHHHHHhhCCCC
Q 001573 157 EFAKL--SPVKLLEETEKAVGDPQ 178 (1051)
Q Consensus 157 ~~~~~--~~~~~~~~~~~~~g~~~ 178 (1051)
.++.. ++..+...+..++|...
T Consensus 160 ~la~~~~~~~~l~~Ai~~LlGl~~ 183 (650)
T TIGR03185 160 ALANPDRLASLLKEAIEVLLGLDL 183 (650)
T ss_pred HHhccccchHHHHHHHHHHhCcHH
Confidence 98864 33446778888888543
No 27
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.96 E-value=1.5e-21 Score=204.26 Aligned_cols=151 Identities=17% Similarity=0.141 Sum_probs=95.6
Q ss_pred ceEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhc-------CCCcc-cccccccccccc-------
Q 001573 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALG-------GDTQL-LGRATSIGAYVK------- 85 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~-------g~~~~-~~r~~~~~~~i~------- 85 (1051)
-++.+|.+.||++|....++..-+-.+++|..||||||++|||+.+|- .+++. ..+-.++..||.
T Consensus 15 FRL~~iqliNWGTF~T~~~~~T~~G~LvTG~~GSGKSTLIDAITavLlP~~kl~~N~AA~A~t~~RSL~tYi~G~~raq~ 94 (1104)
T COG4913 15 FRLSRIQLINWGTFHTVDIPVTREGILVTGGSGSGKSTLIDAITAVLLPQGKLRFNSAAQANTPRRSLVTYIRGAWRAQE 94 (1104)
T ss_pred eeeeEEEEeeccccceeeeeEeccceEEecCCCCCchhHHHHHHHHhcccchhhcccccccCCchhHHHHHHHHHHhhcc
Confidence 578999999999998666665533359999999999999999999992 11110 011124444443
Q ss_pred -------------cCCceeEEEEEEEecCCCceEEEEEEEec--CCcceEEECCeeecHHHHHHHHHHcCcccc------
Q 001573 86 -------------RGEESGYIKISLRGDTKEEHLTIMRKIDT--RNKSEWFFNGKVVPKGEVLEITKRFNIQVN------ 144 (1051)
Q Consensus 86 -------------~g~~~a~v~i~~~~~~~~~~~~i~R~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------ 144 (1051)
...+++.|.++|.| +.|.++++.-.|+- +..+.|+. ..+-..++..+++.++.++|
T Consensus 95 ~~~~~~~~~~~LR~~a~YSlv~~~~~N-G~~~~~TL~~iF~LK~S~~~~~~~--~~~~d~~i~~~~DF~~~G~D~r~iR~ 171 (1104)
T COG4913 95 DPLQDQIVSTYLRPRATYSLVGLTYSN-GEGVEHTLVAIFYLKSSDISSYYG--VFPVDQDINALLDFLKEGIDKRQIRA 171 (1104)
T ss_pred CccccceeeeeeccccceEEEEEEeec-CCCeeEEEEEEEEeeccCCCceee--EEechhhHHHHHHHHHccCcHHHHHH
Confidence 22357889999998 77888888888876 33345552 22233455555543333222
Q ss_pred --------ccccccccchHHHHhccCchHHHHHHHHhhC
Q 001573 145 --------NLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175 (1051)
Q Consensus 145 --------~~~~~l~Q~~~~~~~~~~~~~~~~~~~~~~g 175 (1051)
-+.+| .-|.+..-+..+.++-+.+|-.+..
T Consensus 172 ~~k~A~~~~~~S~-~~~~FR~R~GI~~EeAL~L~H~a~S 209 (1104)
T COG4913 172 AFKEAIFSEQHSV-FSGRFRSRLGISSEEALLLLHRAQS 209 (1104)
T ss_pred HHHhcchhhhhhH-HHHHHHHhhCCChHHHHHHHHHHhh
Confidence 11122 3456666666677777777666553
No 28
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.95 E-value=4.6e-25 Score=250.71 Aligned_cols=186 Identities=18% Similarity=0.209 Sum_probs=152.5
Q ss_pred eEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCceeEEEEEEEecC
Q 001573 22 NIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGDT 101 (1051)
Q Consensus 22 ~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~~ 101 (1051)
+|.+|+|.||++|..++|+|+||+|+|+||||||||+|++||+|++||.. ..++|++|+..+.|+++|.+.+
T Consensus 1 Ml~~l~i~nf~~~~~~~i~f~~g~~vitG~nGaGKS~ll~al~~~~g~~~--------~~~~i~~~~~~~~v~~~f~~~~ 72 (563)
T TIGR00634 1 MLTELRINNFALIRVLTVEFERGLTVLTGETGAGKSMIIDALSLLGGQRA--------GASRVRSGENRAVVEGRFTTES 72 (563)
T ss_pred CceEEEEcceeeeeeeEEecCCCeEEEECCCCCCHHHHHHHHHHHhCcCc--------hHHHhcCCCCeEEEEEEEccCC
Confidence 47899999999999999999999999999999999999999999999852 3688999999999999997532
Q ss_pred C------------------CceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHhccCc
Q 001573 102 K------------------EEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSP 163 (1051)
Q Consensus 102 ~------------------~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~~ 163 (1051)
. ++.++|+|.+..+|.+.|+|||.+++...+.+++.. .+.-+|+......++|
T Consensus 73 ~~~~~~~~l~~~~~~~~~~~~~~ii~R~i~~~grs~~~iNg~~v~~~~l~~l~~~---------li~i~gQ~~~~~l~~~ 143 (563)
T TIGR00634 73 LDDADYPALQAIELEEEDEDGEVILRRSISRDGRSRAYLNGKPVSASSLLEFTSE---------LLDLHGQHDQQLLFRP 143 (563)
T ss_pred CchHHHHHHHhcCCCcCCCCCeEEEEEEEcCCCceEEEECCEEccHHHHHHHhcC---------eEEEECchHHHHhcCH
Confidence 1 357899999999999999999999999999998642 2334666777788899
Q ss_pred hHHHHHHHHhhCCCCcHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 164 VKLLEETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQR 227 (1051)
Q Consensus 164 ~~~~~~~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~ 227 (1051)
..++.+++..+|.. .....+......+..+...+............+++.++.++++++..
T Consensus 144 ~~~~~lLD~~~~~~---~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~ 204 (563)
T TIGR00634 144 DEQRQLLDTFAGAN---EKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEA 204 (563)
T ss_pred HHHHHHHHHhcCch---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999843 44444556667777777777777777777777777777777776643
No 29
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.90 E-value=5.6e-18 Score=189.36 Aligned_cols=583 Identities=13% Similarity=0.119 Sum_probs=386.1
Q ss_pred hHHHHHHHHhhCCCCcHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001573 164 VKLLEETEKAVGDPQLPVQ---HCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKK 240 (1051)
Q Consensus 164 ~~~~~~~~~~~g~~~l~~~---~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 240 (1051)
++.-.-|.........+.. ...|......+..+...+..+...+..+...+..+++++++++......+.+..+...
T Consensus 184 QD~aR~FL~~~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~ 263 (1074)
T KOG0250|consen 184 QDAARSFLANSNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKEN 263 (1074)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445444444444443 4568888899999999999999999999999999999999999999888999999999
Q ss_pred cchhchHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 241 LPWLKYDMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLEKVDQVG 320 (1051)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1051)
+..+....+|..+.....++..+...+...++.+..+...+......+..+...+.+.+..+..+.........++..+.
T Consensus 264 l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r 343 (1074)
T KOG0250|consen 264 LEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEAR 343 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 321 VQVQGKYKEMQELRRQEQSRQQRILKAREELAAAELDLQTVPA--YEPPHDKIEKLGSQILELGVQANQKRLQKSEKEKI 398 (1051)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~ 398 (1051)
..+..+..+...++..+......+..++..++.+++.+..+.. ...+..++.+.+.++..+..++..++..+..|..+
T Consensus 344 ~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e 423 (1074)
T KOG0250|consen 344 KDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREE 423 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987765 35666677777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcccHHHHHHHHHHhhcccCCcccccce-eEEeeCCcchHHHHHhhhc
Q 001573 399 LNQNKLTLRQCSDRLKDMEDKNNKLLHALRNSGAENIFEAYCWLQQHRHELNKEAYGPVL-LEVNVSNRAHANYLEDHVG 477 (1051)
Q Consensus 399 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~-~~i~~~~~~~~~~ie~~l~ 477 (1051)
...+..++..-..+...++..+.++...+ +.....++.+....... -..+||-. ..+...+..+...-..+.|
T Consensus 424 ~~~~~~~~~~~~ee~~~i~~~i~~l~k~i-----~~~~~~l~~lk~~k~dk-vs~FG~~m~~lL~~I~r~~~~f~~~P~G 497 (1074)
T KOG0250|consen 424 LNEVKEKAKEEEEEKEHIEGEILQLRKKI-----ENISEELKDLKKTKTDK-VSAFGPNMPQLLRAIERRKRRFQTPPKG 497 (1074)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhcccch-hhhcchhhHHHHHHHHHHHhcCCCCCCC
Confidence 77777666666666666666666655555 34445556666654433 24556532 2222222223222234567
Q ss_pred ccccceEEEechhhHHHHHhhcCCCCcceEeecCCCCCCCCCCCChHHHHhcCcc-----eeeccc--cc----CcHHH-
Q 001573 478 HYIWKSFITQDAGDRDFLAKNLKPFDVPILNYVSNESSRKEPFQISEEMRALGIS-----ARLDQV--FD----APHAV- 545 (1051)
Q Consensus 478 ~~~~~~~~v~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~l~~l--~~----~~~~~- 545 (1051)
|.. .++.+.+..|+..+..++.+..-+|++.++.+.... ....+..+++ .++..+ +. -+|.+
T Consensus 498 PlG-~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~L-----r~i~~~~~~~~~~ptIvvs~~~~~~y~~~~~p~~~ 571 (1074)
T KOG0250|consen 498 PLG-KYVTLKEPKWALAIERCLGNLLNAFIVTSHKDARIL-----RAIMRRLKIPGNRPTIVVSSFTPFDYSVGRNPGYE 571 (1074)
T ss_pred Ccc-ceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHHHH-----HHHHHHcCCCCCCCcEEEecCCccccccccCCCCC
Confidence 644 568888999999999999877778888776542100 0011111111 011100 00 11222
Q ss_pred HHHHHhhhCCcccccCCCcchhhhhHhhhcCcceEEeCCceEE-----EEe---eccCCcceeeeecccCCcc----ccc
Q 001573 546 KEVLISQFGLDSSYIGSKETDQKADNVAKLGILDFWTPENHYR-----WSI---SRYGGHVSASVEPVNQSRL----LLC 613 (1051)
Q Consensus 546 ~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~---~~~~~~~t~~~~~~~~~~~----~~~ 613 (1051)
.+.+..+ +-.+++....-++...++.+++....... ... ......+|.+++....+|. +++
T Consensus 572 ~pTil~~-------le~ddp~V~N~LID~s~iE~~lLiEdk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~~~~~ySt 644 (1074)
T KOG0250|consen 572 FPTILDA-------LEFDDPEVLNVLIDKSGIEQVLLIEDKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGPNYRVYST 644 (1074)
T ss_pred CCceeee-------eecCChHHHHHhhhhccceeEEEecchHHHHHHHhcCCCCccceeeeccCccccccCCCCcceecc
Confidence 2222222 22344455556777777765544322111 110 0001123444443322222 111
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 614 SVDGNEIERLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESI 693 (1051)
Q Consensus 614 ~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~~~~~l~~l 693 (1051)
..... ..-...-......+..++..+..++.++..+......++..+..++..+..+...+..++..+.....++..+
T Consensus 645 ~~~~~--r~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el 722 (1074)
T KOG0250|consen 645 RGTRA--RRPGVDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTEL 722 (1074)
T ss_pred CCCCC--CCccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 1001123456778888888999999888899999999999999998888888888888888888888888887
Q ss_pred hhc-ccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 694 EKE-DDIN---TALAKLVDQAADLNIQQFKYAIEIKNLLVEIVSCKWSYAEKHMASIEFDAKIRELEFNLKQHEKLAL 767 (1051)
Q Consensus 694 ~~~-~~~~---~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 767 (1051)
+.. .... ..++.+..++.+...++++....+..+...+..+..+..++..........+......+..+...+.
T Consensus 723 ~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~ 800 (1074)
T KOG0250|consen 723 KNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELK 800 (1074)
T ss_pred hhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 763 1112 2334444445555555555555555555555555544444444444444444444444444433333
No 30
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.89 E-value=1.6e-22 Score=206.56 Aligned_cols=142 Identities=23% Similarity=0.342 Sum_probs=121.9
Q ss_pred ceEEEEEEeccccccceEE--ecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccC----CceeEEE
Q 001573 21 GNIIEIELHNFMTFDHLIC--KPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRG----EESGYIK 94 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~~~~i--~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g----~~~a~v~ 94 (1051)
|+|++|+|.|||+|...++ +|+|++|+|+||||||||||++||+|+||+......|.....++|+.+ ...+.|+
T Consensus 1 m~i~~~~~~~f~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~ 80 (251)
T cd03273 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVT 80 (251)
T ss_pred CEeeEEEEeCccccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEE
Confidence 7999999999999997775 899999999999999999999999999997655555766667888754 3478999
Q ss_pred EEEEecCC---------CceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHhccC
Q 001573 95 ISLRGDTK---------EEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLS 162 (1051)
Q Consensus 95 i~~~~~~~---------~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~ 162 (1051)
++|.+.+. ++.++|.|.+..++...|++|++.....++.+++..+|+.+++++++++||+|.+|+++.
T Consensus 81 ~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~ 157 (251)
T cd03273 81 IVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMG 157 (251)
T ss_pred EEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhH
Confidence 99997421 358999999987666678889888778999999999999999998999999999998774
No 31
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.88 E-value=4.7e-17 Score=210.13 Aligned_cols=168 Identities=14% Similarity=0.163 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 192 KLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKKAEYIAAKEQEKDAKKKLDEAA 271 (1051)
Q Consensus 192 ~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (1051)
........+..+..++.++.+.+.++..++..++...+...++..+..++..+.......++..+...+..+...+..+.
T Consensus 166 ~~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~ 245 (1179)
T TIGR02168 166 GISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQ 245 (1179)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566678889999999999999999999999999999999999988888877777777788888888888999999888
Q ss_pred hhhchhhchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 272 NTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLEKVDQVGVQVQGKYKEMQELRRQEQSRQQRILKAREEL 351 (1051)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 351 (1051)
..+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+..++..+...+..+...+..+..++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 325 (1179)
T TIGR02168 246 EELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQL 325 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888777777776666666666665555
Q ss_pred HHHHHHhh
Q 001573 352 AAAELDLQ 359 (1051)
Q Consensus 352 ~~~~~~l~ 359 (1051)
..+...+.
T Consensus 326 ~~~~~~~~ 333 (1179)
T TIGR02168 326 EELESKLD 333 (1179)
T ss_pred HHHHHHHH
Confidence 55554443
No 32
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.88 E-value=7.4e-17 Score=199.70 Aligned_cols=669 Identities=17% Similarity=0.228 Sum_probs=352.3
Q ss_pred cHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhchHHHHHHHHHHHH
Q 001573 179 LPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKKAEYIAAKE 258 (1051)
Q Consensus 179 l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 258 (1051)
+.+....+.+++.++.++...++.+..++.++...+.+++.+++.++...+...++..++..+.++.......++..+..
T Consensus 160 iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~ 239 (1163)
T COG1196 160 LIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRK 239 (1163)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445557889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhchhhchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 259 QEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLEKVDQVGVQVQGKYKEMQELRRQEQ 338 (1051)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1051)
++..+...+..+...+..+...+......+..+..++.++...+.........+...+..+..++..+...+..+.....
T Consensus 240 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~ 319 (1163)
T COG1196 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELE 319 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888888888899999988888888877777766
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC--------------------------CCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 339 SRQQRILKAREELAAAELDLQTVPA--------------------------YEPPHDKIEKLGSQILELGVQANQKRLQK 392 (1051)
Q Consensus 339 ~~~~~~~~~~~~l~~~~~~l~~~~~--------------------------~~~l~~~~~~l~~~l~~l~~~~~~~~~~~ 392 (1051)
.....+..+...+......+..... .+.....+..+..++..+..+......++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 399 (1163)
T COG1196 320 ELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555555555555544433210 00111112222222222222222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcccHH---HHHHHHHHhhcccCCcccccceeEEeeCCcchH
Q 001573 393 SEKEKILNQNKLTLRQCSDRLKDMEDKNNKLLHALRNSGAENIF---EAYCWLQQHRHELNKEAYGPVLLEVNVSNRAHA 469 (1051)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~---~~~~~l~~~~~~~~~~~~g~~~~~i~~~~~~~~ 469 (1051)
..++.++..+...+..+..++..+..++..+...+.... ..+. ..+..+............ .+.-.-....
T Consensus 400 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~ 473 (1163)
T COG1196 400 EELKREIESLEERLERLSERLEDLKEELKELEAELEELQ-TELEELNEELEELEEQLEELRDRLK-----ELERELAELQ 473 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 333333333333333333333333222222222221100 0000 000000000000000000 0000000000
Q ss_pred HHHHhhhcccccceEEEechhhHHHHHhhcCCCCcceEeecCCCCCCCCCCCChHHHHhcCcceeecccccCcHHHHHHH
Q 001573 470 NYLEDHVGHYIWKSFITQDAGDRDFLAKNLKPFDVPILNYVSNESSRKEPFQISEEMRALGISARLDQVFDAPHAVKEVL 549 (1051)
Q Consensus 470 ~~ie~~l~~~~~~~~~v~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~~~~~~~~l 549 (1051)
..+..+... +.........+...... +.+. .+.........+|+.|++.+++.+++.|..++
T Consensus 474 ~~~~~~~~~------l~~~~~~~~~l~~~~~~-------~~~~-----~~~~~~~~~~~~Gv~G~v~~li~v~~~y~~Ai 535 (1163)
T COG1196 474 EELQRLEKE------LSSLEARLDRLEAEQRA-------SQGV-----RAVLEALESGLPGVYGPVAELIKVKEKYETAL 535 (1163)
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHhhh-------hhhH-----HHHHHHHhccCCCccchHHHhcCcChHHHHHH
Confidence 000000000 00000000000000000 0000 00000000014678889999999999999999
Q ss_pred HhhhCCcccccCCCcchhhhhHhh---h--cCcceEEeCCceEEEE----------------------------------
Q 001573 550 ISQFGLDSSYIGSKETDQKADNVA---K--LGILDFWTPENHYRWS---------------------------------- 590 (1051)
Q Consensus 550 ~~~~~~~~~~i~~~~~~~~~~~~~---~--~~~~~~v~~~~~~~~~---------------------------------- 590 (1051)
..++|-+...+++++...+..++. . .|..+|++++......
T Consensus 536 e~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~~~g~~~~a~dli~~d~~~~~~~~~~l~~ 615 (1163)
T COG1196 536 EAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGD 615 (1163)
T ss_pred HHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhccccccccccccchhHHHHHHhcCCHHHHHHHHHHhCC
Confidence 999998777788777555444443 2 2333555544322000
Q ss_pred ---------------eeccC-CcceeeeecccCCccccccCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 591 ---------------ISRYG-GHVSASVEPVNQSRLLLCSVDGNE-IERLRSKKKKLEESVDELEESLKSMQTEQRLIED 653 (1051)
Q Consensus 591 ---------------~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~ 653 (1051)
...++ ..||.+|+.+.++|.++||+.... ......++..+..++..+...+.....++..+..
T Consensus 616 t~Iv~~l~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tGG~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 695 (1163)
T COG1196 616 TLVVDDLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKN 695 (1163)
T ss_pred eEEecCHHHHHHHHHhcCCCceEEecCCcEEeCCeeeecCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 237888999999999999932211 1111225556777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 654 EAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESIEKE-DDINTALAKLVDQAADLNIQQFKYAIEIKNLLVEIV 732 (1051)
Q Consensus 654 ~~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~~~~~l~~l~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~ 732 (1051)
.+..+...+..+...+..+..++..+...+..+......+... ..+...+..+...+..+..++..+...+..+.....
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 775 (1163)
T COG1196 696 ELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666666666655555555555555444444443332 222233333333333344344444333333333333
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHhccC
Q 001573 733 SCKWSYAEKHMASIEFDAKIRELEFNLKQHEKLALQASLHYEDCKKEVEHCRKHLSDAKRQAESIAFITPELEKEFLEMP 812 (1051)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~ 812 (1051)
.+...+..+..........+..+...+......+..+...+.........+..++..+......+ ...+..+.
T Consensus 776 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~-------~~~~~~l~ 848 (1163)
T COG1196 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEEL-------EEKLDELE 848 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 33333333332222222333333333333333333333333333333333333332222222111 11111122
Q ss_pred CCHHHHHHHHHHHHHhchhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001573 813 TTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKW 878 (1051)
Q Consensus 813 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~ 878 (1051)
..+..+...+..+...+..+......+...+.....+..++..++..+...+..+...+......+
T Consensus 849 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 914 (1163)
T COG1196 849 EELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914 (1163)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334444444444333333222233344445555555555555555555555555555444443
No 33
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2e-16 Score=176.50 Aligned_cols=192 Identities=15% Similarity=0.176 Sum_probs=126.6
Q ss_pred hcCcceeecccccCcHHHHHHHHhhhCCcccccCCCcchhhhhHhh---h--cCcceEEeCCceE---------------
Q 001573 528 ALGISARLDQVFDAPHAVKEVLISQFGLDSSYIGSKETDQKADNVA---K--LGILDFWTPENHY--------------- 587 (1051)
Q Consensus 528 ~~g~~~~l~~l~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~---~--~~~~~~v~~~~~~--------------- 587 (1051)
-+||.|.++||-..|+.|..+++.+|+ ...+||++..+.+..++. . .|+.+|+.++...
T Consensus 615 i~Gf~GRLGDLg~Id~kYDvAIsTac~-~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~i~tpenv 693 (1293)
T KOG0996|consen 615 IPGFYGRLGDLGAIDEKYDVAISTACA-RLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAPITTPENV 693 (1293)
T ss_pred CCccccccccccccchHHHHHHHHhcc-ccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCCCCCCCCc
Confidence 378999999999999999999999665 455677766555544443 3 3445788776532
Q ss_pred --------------------------------EEEeeccC-----CcceeeeecccCCccccccCChh-------HH---
Q 001573 588 --------------------------------RWSISRYG-----GHVSASVEPVNQSRLLLCSVDGN-------EI--- 620 (1051)
Q Consensus 588 --------------------------------~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~~~-------~~--- 620 (1051)
.+.+..|| .++|+.|..+.++|.++||...- .+
T Consensus 694 PRLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~rr~RVvTL~G~lIe~SGtmtGGG~~v~~g~mg~~~~~t 773 (1293)
T KOG0996|consen 694 PRLFDLVKCKDEKFRPAFYFALRDTLVADNLEQATRIAYGKDRRWRVVTLDGSLIEKSGTMTGGGKKVKGGRMGTSIRVT 773 (1293)
T ss_pred chHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHHHHhhcCCCceEEEEecceeecccccccCCCCcCCCCCCCCccccC
Confidence 01122333 25799999999999999874211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----
Q 001573 621 ERLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESIEKE---- 696 (1051)
Q Consensus 621 ~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~~~~~l~~l~~~---- 696 (1051)
..-......++..+.........+..++..++.....+......++..+..+......+...+..++..+.+++..
T Consensus 774 ~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~ 853 (1293)
T KOG0996|consen 774 GVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKK 853 (1293)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1113456777888888888888887777778888888888888887777777777777777777777777766655
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Q 001573 697 DDINTALAKLVDQAADLNIQQFKY 720 (1051)
Q Consensus 697 ~~~~~~~~~l~~~~~~l~~~~~~~ 720 (1051)
..-...+..++..+..+..++.++
T Consensus 854 ~~d~~~l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 854 VVDKKRLKELEEQIEELKKEVEEL 877 (1293)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 111223334444444444444444
No 34
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=2.9e-21 Score=196.27 Aligned_cols=139 Identities=32% Similarity=0.436 Sum_probs=117.6
Q ss_pred EEEEEEecccccc-ceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCc------eeEEEE
Q 001573 23 IIEIELHNFMTFD-HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEE------SGYIKI 95 (1051)
Q Consensus 23 i~~l~l~nf~~~~-~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~------~a~v~i 95 (1051)
|++|+|.||++|. .++|+|.+++|+|+||||||||||++||+|+|++.+. ..|+....++|+.|.. .+.|.+
T Consensus 1 i~~i~l~nf~~~~~~~~~~~~~~~~~i~G~NGsGKStll~ai~~~l~~~~~-~~r~~~~~~~i~~~~~~~~~~~~~~v~~ 79 (247)
T cd03275 1 LKRLELENFKSYKGRHVIGPFDRFTCIIGPNGSGKSNLMDAISFVLGEKSS-HLRSKNLKDLIYRARVGKPDSNSAYVTA 79 (247)
T ss_pred CcEEEEECccccCCCeeecCCCCeEEEECCCCCCHHHHHHHHHHHhCCCcc-cccccchhhhcccCccccCCCceEEEEE
Confidence 6799999999998 5679999999999999999999999999999987643 3366677889988865 799999
Q ss_pred EEEecCCCceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHhccCch
Q 001573 96 SLRGDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPV 164 (1051)
Q Consensus 96 ~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~~~ 164 (1051)
+|.+ .++..+.+.|.+ +.|...|++||+.++..++.+++..+|++++....+++||++..|+.++|.
T Consensus 80 ~f~~-~~~~~~~~~~~~-~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~ 146 (247)
T cd03275 80 VYED-DDGEEKTFRRII-TGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPP 146 (247)
T ss_pred EEEc-CCCcEEEEEEEE-ECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCc
Confidence 9986 334555666655 557788999999999999999999999998876677899999999999873
No 35
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2.2e-20 Score=192.17 Aligned_cols=139 Identities=22% Similarity=0.303 Sum_probs=115.7
Q ss_pred EEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCceeEEEEEEEecCC
Q 001573 23 IIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGDTK 102 (1051)
Q Consensus 23 i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~~~ 102 (1051)
|.+|+|.||++|.+.+++|++|+|+|+||||||||||++||.|++||.+. |.....++|+.|...+.|+++|.+ +
T Consensus 1 l~~l~i~nfr~~~~~~~~~~~~~~~i~G~NGsGKS~ll~Ai~~~~~~~~~---r~~~~~~~i~~~~~~~~v~~~f~~--~ 75 (270)
T cd03242 1 LKSLELRNFRNYAELELEFEPGVTVLVGENAQGKTNLLEAISLLATGKSH---RTSRDKELIRWGAEEAKISAVLER--Q 75 (270)
T ss_pred CcEEEEeCCcCcceeEEecCCCeEEEECCCCCCHHHHHHHHHHhccCCCC---CCCCHHHHHhcCCCCEEEEEEEEe--C
Confidence 57899999999999999999999999999999999999999999998754 555678999999999999999986 3
Q ss_pred CceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHhccCchHHHHHHHHhhC
Q 001573 103 EEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175 (1051)
Q Consensus 103 ~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~~~~~~~~~~~~~g 175 (1051)
+..+.|.|.+.++|++.|++||..++. +.++...+. .+..|+....++..+|..++.+++...+
T Consensus 76 ~~~~~i~~~~~~~~~~~~~ing~~~~~--l~~l~~~l~-------~i~~~~~~~~l~~~~p~~rr~~lD~~~~ 139 (270)
T cd03242 76 GGELALELTIRSGGGRKARLNGIKVRR--LSDLLGVLN-------AVWFAPEDLELVKGSPADRRRFLDRLLG 139 (270)
T ss_pred CCeEEEEEEEEcCCceEEEECCeeccC--HHHHhCcCc-------EEEEecchhhhhcCCHHHHHHHHHHHHH
Confidence 456889999877788899999998875 444433221 2334455556778899999999999887
No 36
>PRK00064 recF recombination protein F; Reviewed
Probab=99.84 E-value=9.5e-20 Score=194.50 Aligned_cols=140 Identities=21% Similarity=0.302 Sum_probs=118.5
Q ss_pred ceEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCceeEEEEEEEec
Q 001573 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1051)
|+|.+|+|.||++|.+.+++|+||+|+|+||||||||||++||.++++|.+. |+....++|++|...+.|+++|.+
T Consensus 1 M~i~~l~i~nfr~~~~~~l~~~~~~~~i~G~NgsGKT~lleai~~l~~~~s~---r~~~~~~li~~g~~~~~v~~~~~~- 76 (361)
T PRK00064 1 MYLTRLSLTDFRNYEELDLELSPGVNVLVGENGQGKTNLLEAIYLLAPGRSH---RTARDKELIRFGAEAAVIHGRVEK- 76 (361)
T ss_pred CEEEEEEEeCCCcccceEEEecCCeEEEECCCCCCHHHHHHHHHHhCCCCCc---cCCChhHHHhcCCCcEEEEEEEEe-
Confidence 8999999999999999999999999999999999999999999999988765 767788999999999999999974
Q ss_pred CCCceEEEEEEEecCCcceEEECCeee-cHHHHHHHHHHcCccccccccccccchHHHHhccCchHHHHHHHHhhC
Q 001573 101 TKEEHLTIMRKIDTRNKSEWFFNGKVV-PKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175 (1051)
Q Consensus 101 ~~~~~~~i~R~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~~~~~~~~~~~~~g 175 (1051)
++..+.|.|.+.++|.+.|++||+++ +..++..++... .|-||+ ..++..+|..|+.+++..++
T Consensus 77 -~~~~~~i~~~~~~~~~~~~~ing~~~~~~~~l~~~~~~v--------~~~p~~--~~l~~~~p~~RR~fLD~~~~ 141 (361)
T PRK00064 77 -GGRELPLGLEIDKKGGRKVRINGEPQRKLAELAGLLNVV--------LFTPED--LRLVKGGPSERRRFLDRLLF 141 (361)
T ss_pred -CCcEEEEEEEEEcCCceEEEECCccccCHHHHhhhccEE--------EEccch--hhhhcCCHHHHHHHHHHHHh
Confidence 45567899988776778899999988 666666655422 333443 35777899999999999886
No 37
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=3.4e-20 Score=191.51 Aligned_cols=133 Identities=23% Similarity=0.378 Sum_probs=110.3
Q ss_pred EEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCceeEEEEEEEecCC
Q 001573 23 IIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGDTK 102 (1051)
Q Consensus 23 i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~~~ 102 (1051)
|.+|+|.||++|...+|+|+||+|+|+||||||||||++||+|++|+.+ ..++++.|...+.|+++|.+.+.
T Consensus 1 l~~l~i~nf~~~~~~~i~~~~~~~~i~G~nGsGKS~il~ai~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~ 72 (276)
T cd03241 1 LLELSIKNFALIEELELDFEEGLTVLTGETGAGKSILLDALSLLLGGRA--------SADLIRSGAEKAVVEGVFDISDE 72 (276)
T ss_pred CcEEEEeCccceeeeEEEeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCC--------hHHHhhCCCCeEEEEEEEecCCc
Confidence 5789999999999999999999999999999999999999999999863 35889999999999999986321
Q ss_pred --------------CceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHhccCchHHHH
Q 001573 103 --------------EEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLE 168 (1051)
Q Consensus 103 --------------~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~~~~~~~ 168 (1051)
+..++|+|.+..+|++.|+|||++++.+.+..+... .+..+++...+..++|..++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~i~R~i~~~~~s~~~Ing~~vsl~~l~~i~~~---------li~i~gq~~~~~l~~~~~~~~ 143 (276)
T cd03241 73 EEAKALLLELGIEDDDDLIIRREISRKGRSRYFINGQSVTLKLLRELGSL---------LVDIHGQHDHQNLLNPERQLD 143 (276)
T ss_pred hHHHHHHHHcCCCCCCeEEEEEEEecCCceEEEECCEEECHHHHHHHHHh---------heEEECcHHHHHhcChHHhHh
Confidence 357999999998899999999999999999887632 222344455555567777777
Q ss_pred HHHH
Q 001573 169 ETEK 172 (1051)
Q Consensus 169 ~~~~ 172 (1051)
++++
T Consensus 144 lLD~ 147 (276)
T cd03241 144 LLDG 147 (276)
T ss_pred hhhC
Confidence 7766
No 38
>PRK14079 recF recombination protein F; Provisional
Probab=99.83 E-value=3.3e-19 Score=189.00 Aligned_cols=138 Identities=15% Similarity=0.213 Sum_probs=111.8
Q ss_pred ceEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCceeEEEEEEEec
Q 001573 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1051)
|+|.+|+|.||++|.+.+++|+||+|+|+||||||||||++||+|++||.. |..+..++|+.|...+.|.++|...
T Consensus 1 M~i~~l~l~nfRn~~~~~l~f~~g~nvi~G~NGsGKT~lLeAI~~~~~gs~----r~~~~~~lI~~g~~~~~v~~~~~~~ 76 (349)
T PRK14079 1 MRLLSLRQLNYRNLAPPTLAFPPGVTAVVGENAAGKTNLLEAIYLALTGEL----PNGRLADLVRFGEGEAWVHAEVETG 76 (349)
T ss_pred CEEEEEEEeccCCcccceEEeCCCeEEEECCCCCCHHHHHHHHHHHhcCCC----CCCcHHhheecCCCcEEEEEEEEeC
Confidence 899999999999999999999999999999999999999999999999833 6667889999999999999999752
Q ss_pred CCCceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHhccCchHHHHHHHHhhC
Q 001573 101 TKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175 (1051)
Q Consensus 101 ~~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~~~~~~~~~~~~~g 175 (1051)
+....+...+.. +++.|++||++++..++..++. +.++.|+...-+. .+|..++.+++..++
T Consensus 77 --~~~~~~~~~~~~-~~~~~~ing~~~~~~~l~~~~~---------~v~~~p~d~~li~-~~p~~RR~fLD~~l~ 138 (349)
T PRK14079 77 --GGLSRLEVGLGP-GRRELKLDGVRVSLRELARLPG---------AVLIRPEDLELVL-GPPEGRRAYLDRLLS 138 (349)
T ss_pred --CCeEEEEEEEEc-CceEEEECCeecCHHHHHhhhc---------EEEEecCchHhhh-CCHHHHHHHHHHHHH
Confidence 334455555544 4567999999998777666531 2345677765544 589999999988875
No 39
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.82 E-value=2.9e-12 Score=159.19 Aligned_cols=59 Identities=20% Similarity=0.357 Sum_probs=42.7
Q ss_pred cCCchHHHHHHHHHHHhccc--CCCCc---eEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCC
Q 001573 940 QSGGERSVSTILYLVSLQDL--TNCPF---RVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPK 1004 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~--~~~Pf---~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~ 1004 (1051)
-|-|.=-++.+.|.+||..+ ..+|| |.+||| .-||+.|+..+++++- .++-.+|.-+|.
T Consensus 1121 sS~G~syLi~~~~~i~l~~~lr~~~~~~ihwpiDEi-G~L~~~Nv~~l~~~~~-----~nnI~li~A~P~ 1184 (1201)
T PF12128_consen 1121 SSHGTSYLILCMFFIALTRMLRGDADFRIHWPIDEI-GKLHPNNVKKLLDMCN-----SNNISLISAFPN 1184 (1201)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCCCeEEEeeehhh-ccCChHHHHHHHHHHH-----hCCceEEEeCCC
Confidence 57787777777777787553 45687 789999 6899999999888763 235555555565
No 40
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.81 E-value=6.1e-20 Score=179.96 Aligned_cols=111 Identities=60% Similarity=1.030 Sum_probs=101.0
Q ss_pred ceEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCceeEEEEEEEec
Q 001573 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1051)
|.|.+|+|.||++|.+..|+|+||+|+|+||||||||||++||+++|||.+....|+....++++.|...+.|+++|.+.
T Consensus 1 ~~i~~i~i~nfr~~~~~~i~~~~g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~ 80 (213)
T cd03277 1 GSIVRIKLENFVTYDETEFRPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGN 80 (213)
T ss_pred CeeEEEEEeCCCCcceeEEecCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeC
Confidence 57999999999999999999999999999999999999999999999999877678778899999999999999999863
Q ss_pred CCCceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHhccCchHHHH
Q 001573 101 TKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLE 168 (1051)
Q Consensus 101 ~~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~~~~~~~ 168 (1051)
+. . +.++|+|++++||++.+|+.++|.+++.
T Consensus 81 ~~-~------------------------------------~~~~n~~~~~~q~~~~~~~~~~~~e~l~ 111 (213)
T cd03277 81 PG-N------------------------------------IQVDNLCQFLPQDRVGEFAKLSPIELLV 111 (213)
T ss_pred CC-c------------------------------------cccCCceEEEchHHHHHHHhCChHhHhe
Confidence 32 1 7889999999999999999999998773
No 41
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.81 E-value=8.4e-17 Score=183.40 Aligned_cols=191 Identities=16% Similarity=0.216 Sum_probs=151.0
Q ss_pred cCCCHHHHHHHHHHHHHhchhccCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001573 811 MPTTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDL---STKQEADKKELKRFLAEIDALKEKWLPTLRNLVA 887 (1051)
Q Consensus 811 ~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~ 887 (1051)
.|..++.++.++..+......++.....+...++.+..++..+ ...+..+...+..+...+..+-..+.........
T Consensus 299 dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~ 378 (563)
T TIGR00634 299 DPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAE 378 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888866667777777777777665 3467777778888888888888888888888888
Q ss_pred HHHHHHHHHHhcCCc-ceEEEEe-ccCCcc------cccc---eEEEEEecCCCccccccccccCCchHHHHHHHHHHHh
Q 001573 888 QINETFSRNFQEMAV-AGEVSLD-EHESDF------DKFG---ILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSL 956 (1051)
Q Consensus 888 ~i~~~F~~~f~~l~~-~g~~~l~-~~~~~~------~~~g---l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lalllal 956 (1051)
.+...+...+..|++ ++.+.+. .....+ ...| ++|.+.+++|.+.+|+ ...+||||+++++||+.+++
T Consensus 379 ~l~~~v~~~l~~L~m~~~~f~v~~~~~~~~~~~~~~~~~G~d~v~f~~~~n~g~~~~pl-~~~lSgGe~~rv~la~~l~~ 457 (563)
T TIGR00634 379 RLAKRVEQELKALAMEKAEFTVEIKTSLPSGAKARAGAYGADQVEFLFSANTGEPVKPL-AKVASGGELSRVMLALKVVL 457 (563)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEEeecCccccccCCCCCCceEEEEEEecCCCCCCCCh-hhhcCHhHHHHHHHHHHHhh
Confidence 888888889999966 4555544 111111 2345 8899999989887777 45699999999999999998
Q ss_pred cccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 957 QDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 957 ~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
....+.|++||||+|+|||+.....++..|.+++. +.|+|+|||..
T Consensus 458 ~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~---~~~vi~iTH~~ 503 (563)
T TIGR00634 458 SSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE---RHQVLCVTHLP 503 (563)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc---CCEEEEEEChH
Confidence 76667899999999999999999999999988764 79999999993
No 42
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1e-13 Score=151.51 Aligned_cols=197 Identities=11% Similarity=0.182 Sum_probs=135.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhchHHHHHHHHHHHHHHHHHHHH
Q 001573 187 VEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKKAEYIAAKEQEKDAKKK 266 (1051)
Q Consensus 187 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (1051)
.-|..++++....++.+..+-..+...+..++..+..+++..+-.+.|..+......+.|..+..++.+...++..+...
T Consensus 166 rvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~ 245 (1200)
T KOG0964|consen 166 RVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEED 245 (1200)
T ss_pred chhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 34678888888999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHhhhchhhchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 267 LDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLEK-------VDQVGVQVQGKYKEMQELRRQEQS 339 (1051)
Q Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1051)
....-++-.....++......+..+..++.++...+..+....+++..+ ...+.-++..++.++.........
T Consensus 246 r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~ 325 (1200)
T KOG0964|consen 246 RSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNL 325 (1200)
T ss_pred HhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhh
Confidence 7776666555555666666666666666666666655555544444443 444444555555555554444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC-CCCChHHHHHHHHHHHHHHH
Q 001573 340 RQQRILKAREELAAAELDLQTVPA-YEPPHDKIEKLGSQILELGV 383 (1051)
Q Consensus 340 ~~~~~~~~~~~l~~~~~~l~~~~~-~~~l~~~~~~l~~~l~~l~~ 383 (1051)
....+..+...+.+.+.++..+.. +..+..+-..+..++..++.
T Consensus 326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~ 370 (1200)
T KOG0964|consen 326 ALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQ 370 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 445555555666666666555433 44443333333344443333
No 43
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.77 E-value=3e-13 Score=174.08 Aligned_cols=165 Identities=13% Similarity=0.198 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 192 KLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKKAEYIAAKEQEKDAKKKLDEAA 271 (1051)
Q Consensus 192 ~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (1051)
........+..+...+.++.+.+.+++..+..++...+...++..+..++..+.......++......+..+...+..+.
T Consensus 164 g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1164)
T TIGR02169 164 GVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIE 243 (1164)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788888899999999999999999999998888888888888777777666666677777778888888888888
Q ss_pred hhhchhhchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 272 NTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMD--------FLEKVDQVGVQVQGKYKEMQELRRQEQSRQQR 343 (1051)
Q Consensus 272 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1051)
.++..+...+..+...+..+...+..+...+..+...+.. +..++..+...+..+...+..+...+..+..+
T Consensus 244 ~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 323 (1164)
T TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEER 323 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888887776666 44444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHH
Q 001573 344 ILKAREELAAAEL 356 (1051)
Q Consensus 344 ~~~~~~~l~~~~~ 356 (1051)
+..+..++..+..
T Consensus 324 ~~~~~~~~~~l~~ 336 (1164)
T TIGR02169 324 LAKLEAEIDKLLA 336 (1164)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444433333
No 44
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.77 E-value=3.7e-18 Score=174.84 Aligned_cols=138 Identities=24% Similarity=0.437 Sum_probs=114.1
Q ss_pred EEEEEEeccccccceEE--ecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCc----eeEEEEE
Q 001573 23 IIEIELHNFMTFDHLIC--KPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEE----SGYIKIS 96 (1051)
Q Consensus 23 i~~l~l~nf~~~~~~~i--~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~----~a~v~i~ 96 (1051)
|++|+|.||++|....+ +|++++|+|+||||||||||++||+++|+...+. .|.....++|+.|.. .++|+++
T Consensus 1 i~~i~~~nfksy~~~~~~~~~~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~-~~~~~~~~li~~~~~~~~~~~~v~i~ 79 (243)
T cd03272 1 IKQVIIQGFKSYKDQTVIEPFSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTH-LREEQRQALLHEGSGPSVMSAYVEII 79 (243)
T ss_pred CcEEEEeCccCcccCcccccCCCCcEEEECCCCCCHHHHHHHHHHHHcCchhh-hhhhhHHHhEeCCCCCCCceEEEEEE
Confidence 67999999999996655 7899999999999999999999999999877665 565566788887754 5899999
Q ss_pred EEecCC-----CceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHhccC
Q 001573 97 LRGDTK-----EEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLS 162 (1051)
Q Consensus 97 ~~~~~~-----~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~ 162 (1051)
|.+.+. ...+.|.|++.. ....|.+++...+..++..++..+|+...+++++++||++..++.+.
T Consensus 80 ~~~~~~~~~~~~~~~~i~r~ig~-~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~ 149 (243)
T cd03272 80 FDNSDNRFPIDKEEVRLRRTIGL-KKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMK 149 (243)
T ss_pred EEcCCCccCCCCCEEEEEEEEEC-CCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhcc
Confidence 986422 257889998876 56788999988888999999999999887776778999988886653
No 45
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=99.74 E-value=1.2e-16 Score=162.68 Aligned_cols=141 Identities=21% Similarity=0.282 Sum_probs=117.0
Q ss_pred ceEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCceeEEEEEEEec
Q 001573 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1051)
|+|.+|.|.||++|.+++++|+||+|+++|+||+|||||+.||.+.-.|.+. |.....++|++|+..+.|...+..
T Consensus 1 M~l~~L~L~nFRNy~~~~l~~~p~~nvl~G~NgqGKTNlLEAI~~l~~grS~---Rt~~~~~lir~~~~~~~i~~~v~~- 76 (363)
T COG1195 1 MYLLSLLLRNFRNYAELDLDLSPGVNVLVGENGQGKTNLLEAIYLLALGRSH---RTSRDKELIRTGADEAEISARVQR- 76 (363)
T ss_pred CceeeeehhhcCCcccceeccCCCcEEEECCCCCchHHHHHHHHHHccccCc---cccchhHHHhcCCccEEEEEEEee-
Confidence 8899999999999999999999999999999999999999999998888887 666789999999999999999986
Q ss_pred CCCceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHhccCchHHHHHHHHhhC
Q 001573 101 TKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175 (1051)
Q Consensus 101 ~~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~~~~~~~~~~~~~g 175 (1051)
.+...++.=.+.+.|.....+||.++.. +.+++..+++....| .+- .+++.+|..|+.+++..++
T Consensus 77 -~~~~~~~~~~~~~~g~~~vring~~~~~--~~el~g~l~~vlf~P-----edl--~Lv~G~P~~RRrFLD~~l~ 141 (363)
T COG1195 77 -KGREGTLGLQISKKGRRRVRINGTKARK--LAELAGHLNVVLFTP-----EDL--GLVKGSPSDRRRFLDWLLF 141 (363)
T ss_pred -ccceeeeEEEeccCcceEEEECCccccc--HHHHhhhCceEEecc-----ccc--ccccCCHHHHHHHHHHHHh
Confidence 3556666666667777889999988764 566666666633332 221 4677899999999988876
No 46
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=7.9e-17 Score=171.21 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=104.0
Q ss_pred ceEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCceeEEEEEEEec
Q 001573 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1051)
|+|.+|+|.||++|.+.+++|+||+|+|+||||||||||++||+++++|.+. |+....++|++|...+.|.++|.++
T Consensus 1 M~l~~L~i~nFR~~~~~~l~~~~~~nvi~G~NGsGKT~lLeAi~~l~~~~s~---R~~~~~~li~~g~~~~~v~~~~~~~ 77 (365)
T TIGR00611 1 MYLSRLELTDFRNYDAVDLELSPGVNVIVGPNGQGKTNLLEAIYYLALGRSH---RTSRDKPLIRFGAEAFVIEGRVSKG 77 (365)
T ss_pred CEEEEEEEeCCcceeeeEEEECCCeEEEECCCCCCHHHHHHHHHHHcccCCc---cccchhhHHhCCCCeEEEEEEEEeC
Confidence 8999999999999999999999999999999999999999999998888765 6667889999999999999999863
Q ss_pred CCCceEEEEEEEecCCcceEEECCeeecHHHHHHHHHHcCccccccccccccchHHHHhccCchHHHHHHHHhhC
Q 001573 101 TKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175 (1051)
Q Consensus 101 ~~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~Q~~~~~~~~~~~~~~~~~~~~~~g 175 (1051)
+....+.+...+.+.+ ....+||..+. -..++...+.. ++.+..--.++..+|..|+.+++..++
T Consensus 78 ~~~~~i~~~~~~~~~~-~~~~~~~~~~~--~~~~l~~~l~~-------v~~~p~~~~L~~g~p~~RR~fLD~~~~ 142 (365)
T TIGR00611 78 DREVTIPLEGLLKKKG-KKAKVNIDGQD--KLSDLAGLLPM-------QLFAPEDLTLVKGSPKYRRRFLDWGLF 142 (365)
T ss_pred CceEEEeEEEEEccCC-CeEEECCCCCc--CHHHHHhhccE-------EEecCCCHHHhcCChHHHHHHHHHHHH
Confidence 3222223333333322 34666665554 12444444432 222222234777899999999986654
No 47
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.69 E-value=1.4e-13 Score=160.66 Aligned_cols=175 Identities=14% Similarity=0.160 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHhchhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-hH-HHHHHHHHHHHH
Q 001573 815 IEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDAL-KEK-WL-PTLRNLVAQINE 891 (1051)
Q Consensus 815 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l-~~~-~~-~~~~~~~~~i~~ 891 (1051)
+..+..+...++.++..+.........++..+..++.++.....++......... +..+ ... .. .........++.
T Consensus 353 i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~-i~~~~~~~g~~~~i~~~~l~~~n~ 431 (562)
T PHA02562 353 LITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGI-VTDLLKDSGIKASIIKKYIPYFNK 431 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4445555555566666655445556667777777777777777777666554433 2222 221 11 122334556666
Q ss_pred HHHHHHhcCCcceEEEEeccCCcccccceEEEEEecCCCccccccccccCCchHHHHHHHHHHHhcc------cCCCCce
Q 001573 892 TFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQD------LTNCPFR 965 (1051)
Q Consensus 892 ~F~~~f~~l~~~g~~~l~~~~~~~~~~gl~i~v~~~~~~~~~~~~~~~lSGGErs~~~lalllal~~------~~~~Pf~ 965 (1051)
.+..++..++ +...+. .++ ++...+...+.. ...+..|||||+.+++||+.|++.. ..+.|++
T Consensus 432 ~~~~~L~~l~--~~~~~~-~~~-----~~~~~~~~~g~~---~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~l 500 (562)
T PHA02562 432 QINHYLQIME--ADYNFT-LDE-----EFNETIKSRGRE---DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLL 500 (562)
T ss_pred HHHHHHHHhh--eeEEEE-ech-----hhhhHHhcCCCC---ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeE
Confidence 6777777664 344443 121 222334433221 2245679999999999999987422 2467899
Q ss_pred Eeeccc-cCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 966 VVDEIN-QGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 966 vlDEid-~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
||||++ ++||+.....++..|... . +.++|+|||..
T Consensus 501 ilDEp~~~~ld~~~~~~~~~~l~~~-~---~~~iiiish~~ 537 (562)
T PHA02562 501 ILDEVFDGALDAEGTKALLSILDSL-K---DTNVFVISHKD 537 (562)
T ss_pred EEecccCcccchhHHHHHHHHHHhC-C---CCeEEEEECch
Confidence 999996 789999999998888765 3 78999999993
No 48
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.69 E-value=4.1e-17 Score=154.88 Aligned_cols=77 Identities=39% Similarity=0.626 Sum_probs=69.1
Q ss_pred EEEEEEeccccccceEEecCCc-eeEEEcCCCCChHHHHHHHHHHhcCCCccccccccc---ccccccCCceeEEEEEEE
Q 001573 23 IIEIELHNFMTFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSI---GAYVKRGEESGYIKISLR 98 (1051)
Q Consensus 23 i~~l~l~nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~---~~~i~~g~~~a~v~i~~~ 98 (1051)
|++|+|.||+||...++.|.++ +|+|+||||||||||++||+|+|||.+....|...+ .++++.|...++|+|+|.
T Consensus 1 i~~i~l~nf~~~~~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~ 80 (178)
T cd03239 1 IKQITLKNFKSYRDETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFD 80 (178)
T ss_pred CcEEEEECccCCCCCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEE
Confidence 5789999999999878777655 999999999999999999999999999877666655 788999999999999998
Q ss_pred e
Q 001573 99 G 99 (1051)
Q Consensus 99 ~ 99 (1051)
+
T Consensus 81 ~ 81 (178)
T cd03239 81 K 81 (178)
T ss_pred C
Confidence 6
No 49
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.66 E-value=7.9e-09 Score=110.26 Aligned_cols=49 Identities=27% Similarity=0.319 Sum_probs=45.5
Q ss_pred CCceEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHh
Q 001573 19 MPGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALAL 67 (1051)
Q Consensus 19 ~~~~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L 67 (1051)
..|+..+|+|.||-.|-..+|+++.-+|.+.|.||+||||.|.|+..+|
T Consensus 3 eRGKfrSLTliNWNGFFARTFDlDeLVTTLSGGNGAGKSTTMA~FvTAL 51 (1480)
T COG3096 3 ERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTAL 51 (1480)
T ss_pred cccccceeeEeeccchhhhhccHHHHHHhccCCCCCcccchHHHHHHHH
Confidence 4588999999999999888899999999999999999999999999988
No 50
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=99.65 E-value=1.8e-16 Score=115.44 Aligned_cols=49 Identities=39% Similarity=0.575 Sum_probs=45.3
Q ss_pred EEEEEEeccccccceEEecCC-c-eeEEEcCCCCChHHHHHHHHHHhcCCC
Q 001573 23 IIEIELHNFMTFDHLICKPGS-R-LNLVIGPNGSGKSSLVCAIALALGGDT 71 (1051)
Q Consensus 23 i~~l~l~nf~~~~~~~i~f~~-~-~~~I~G~NGsGKSti~~Ai~~~L~g~~ 71 (1051)
+.+|.|.||++|...+++|++ | +++|+||||||||||+|||.|+|+|..
T Consensus 1 L~rl~L~Nw~~f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 1 LTRLQLVNWGSFDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CcEEEEeccCccCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 468999999999999999984 3 899999999999999999999999976
No 51
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=1.8e-09 Score=119.80 Aligned_cols=164 Identities=12% Similarity=0.192 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhcccchhchHHHHHHHHHHHHHHHHHHHHHH
Q 001573 197 ECTVKRNGDTLNQLKALNVEQEKDVE--------RVRQRAELLEKVESMKKKLPWLKYDMKKAEYIAAKEQEKDAKKKLD 268 (1051)
Q Consensus 197 ~~~l~~~~~~l~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (1051)
+.+.+.+...+...+..+++...-+. .+++.....-++......+..+..-....+|-............+.
T Consensus 175 e~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~ 254 (1174)
T KOG0933|consen 175 ENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIE 254 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666665443332 2333333333333333334444333344455566667777777778
Q ss_pred HHHhhhchhhchHhhHHHHHHHHHhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 269 EAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLI--------NENSKRRMDFLEKVDQVGVQVQGKYKEMQELRRQEQSR 340 (1051)
Q Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1051)
+....+..+.+.+.....++..++.++.++..+. ..+..++..+...+......+......+.........+
T Consensus 255 e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i 334 (1174)
T KOG0933|consen 255 EMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEI 334 (1174)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 8888888888888888888888888888777643 23333334444444444444444444444444444445
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 001573 341 QQRILKAREELAAAELDLQT 360 (1051)
Q Consensus 341 ~~~~~~~~~~l~~~~~~l~~ 360 (1051)
...+.+.+..+..-+..+..
T Consensus 335 ~~~i~e~~~~l~~k~~~~~~ 354 (1174)
T KOG0933|consen 335 RKNIEEDRKKLKEKEKAMAK 354 (1174)
T ss_pred HHhHHHHHHHHHHHHHHHhh
Confidence 55555555444444444433
No 52
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.62 E-value=8.8e-16 Score=149.13 Aligned_cols=79 Identities=38% Similarity=0.655 Sum_probs=73.1
Q ss_pred EEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCceeEEEEEEEecC
Q 001573 23 IIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGDT 101 (1051)
Q Consensus 23 i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~~ 101 (1051)
|.+|+|.||++|.+..|+|++|+|+|+||||||||||++||+++|+|......|+..+.++++.|...+.|.++|.+.+
T Consensus 1 i~~l~l~nfr~~~~~~l~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~ 79 (198)
T cd03276 1 IESITLKNFMCHRHLQIEFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQG 79 (198)
T ss_pred CeEEEEeCccceeeeEEecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCC
Confidence 5799999999999999999999999999999999999999999999988777788788999999999999999998743
No 53
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=99.62 E-value=1.1e-15 Score=152.95 Aligned_cols=75 Identities=36% Similarity=0.598 Sum_probs=54.6
Q ss_pred EEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccc----cccc-c-ccCCceeEEEEEEE
Q 001573 25 EIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATS----IGAY-V-KRGEESGYIKISLR 98 (1051)
Q Consensus 25 ~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~----~~~~-i-~~g~~~a~v~i~~~ 98 (1051)
+|+|.||++|.+.+|+|+||+|+|+||||+|||||++||.|||||.++....... ..++ + ..+...+.++++|.
T Consensus 1 ~i~i~nf~~~~~~~i~f~~g~~vi~G~Ng~GKStil~ai~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (202)
T PF13476_consen 1 KIHIKNFRSFKDLEIDFSPGLNVIYGPNGSGKSTILEAIRYALGGQSSRLKDDESQNIAKDEVEIEFEGNKESYIEIEFE 80 (202)
T ss_dssp EEEEEEETTEEEEEEE--SEEEEEEESTTSSHHHHHHHHHHHHHSS-TTSSCGCGCTTTSSCEEEEEEESSCEEEEEECE
T ss_pred CEEEEEeCCCcceEEEcCCCcEEEECCCCCCHHHHHHHHHHHHcCCCCCCCccccccccceeEEEEecCCCcEEEEEEEE
Confidence 6899999999999999999999999999999999999999999998754322110 0111 1 22445566777776
Q ss_pred e
Q 001573 99 G 99 (1051)
Q Consensus 99 ~ 99 (1051)
.
T Consensus 81 ~ 81 (202)
T PF13476_consen 81 D 81 (202)
T ss_dssp E
T ss_pred E
Confidence 5
No 54
>PRK02224 chromosome segregation protein; Provisional
Probab=99.60 E-value=5.3e-09 Score=128.98 Aligned_cols=152 Identities=15% Similarity=0.189 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCc-ceEEEEeccCCccc
Q 001573 841 QEYEHRQRQIEDLSTKQEADKK---ELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAV-AGEVSLDEHESDFD 916 (1051)
Q Consensus 841 ~~~~~~~~~~~~l~~~~~~l~~---~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~F~~~f~~l~~-~g~~~l~~~~~~~~ 916 (1051)
+++.....++..+...+..+.. ....+...+..+.......+ ...+...|..+|+.+++ +++..|..+ +
T Consensus 691 e~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~-~--- 763 (880)
T PRK02224 691 EELEELRERREALENRVEALEALYDEAEELESMYGDLRAELRQRN---VETLERMLNETFDLVYQNDAYSHIELD-G--- 763 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCCCCeeEEEec-C---
Confidence 3344444445444444444443 33445555555544443333 34555578888888764 344454411 1
Q ss_pred ccceEEEEEecCCCccccccccccCCchHHHHHHHHHHHhccc--------CCCCceEeeccccCCChHHHHHHHHHHHH
Q 001573 917 KFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDL--------TNCPFRVVDEINQGMDPINERKMFQQLVR 988 (1051)
Q Consensus 917 ~~gl~i~v~~~~~~~~~~~~~~~lSGGErs~~~lalllal~~~--------~~~Pf~vlDEid~~lD~~n~~~~~~~l~~ 988 (1051)
++++. +..++|. .+++..||||++..++|||++|+... .|.|++||||++++||+.++..++.+|..
T Consensus 764 ~~~i~--~~~~~g~---~~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~ 838 (880)
T PRK02224 764 EYELT--VYQKDGE---PLEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVES 838 (880)
T ss_pred Cccee--eeCCCCC---ccChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHH
Confidence 34553 3333454 45567799999999999999987542 35678999999999999999999988877
Q ss_pred HhcCCCCCeEEEEcCCC
Q 001573 989 AASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 989 ~~~~~~~~Q~i~iTp~~ 1005 (1051)
+.. ...+|||||||+.
T Consensus 839 ~~~-~~~~qviiish~~ 854 (880)
T PRK02224 839 MRR-LGVEQIVVVSHDD 854 (880)
T ss_pred HHh-cCCCeEEEEECCh
Confidence 653 2346999999995
No 55
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.55 E-value=1.6e-14 Score=141.32 Aligned_cols=91 Identities=23% Similarity=0.393 Sum_probs=75.7
Q ss_pred EEEEEEecccccc-ceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCccccc-ccccccccccCCceeEEEEEEEec
Q 001573 23 IIEIELHNFMTFD-HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGR-ATSIGAYVKRGEESGYIKISLRGD 100 (1051)
Q Consensus 23 i~~l~l~nf~~~~-~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r-~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1051)
|++|+|.||++|. ..+++|++|+++|+|||||||||+++||+|+|+|....... .....+.+..+...+.|.+.|.+.
T Consensus 1 ~~~l~l~nfr~~~~~~~l~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~ 80 (204)
T cd03240 1 IDKLSIRNIRSFHERSEIEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENA 80 (204)
T ss_pred CcEEEEECcccccCceEEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeC
Confidence 5789999999965 77899999999999999999999999999999998764321 112457788888899999999974
Q ss_pred CCCceEEEEEEEec
Q 001573 101 TKEEHLTIMRKIDT 114 (1051)
Q Consensus 101 ~~~~~~~i~R~~~~ 114 (1051)
. +..++|.|.+..
T Consensus 81 ~-~~~~~v~r~~~~ 93 (204)
T cd03240 81 N-GKKYTITRSLAI 93 (204)
T ss_pred C-CCEEEEEEEhhH
Confidence 3 789999997744
No 56
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.52 E-value=2.4e-14 Score=142.08 Aligned_cols=90 Identities=27% Similarity=0.416 Sum_probs=74.4
Q ss_pred ceEEEEEEecccccc-ceEEecCCc----eeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCceeEEEE
Q 001573 21 GNIIEIELHNFMTFD-HLICKPGSR----LNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKI 95 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~-~~~i~f~~~----~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i 95 (1051)
|++.+|+|.||++|. ...|+|.++ +++|+||||||||||++||.|+|+|.+....+.....+.+..+...+.|.+
T Consensus 1 m~~~~i~l~nf~~y~~~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (213)
T cd03279 1 MKPLKLELKNFGPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSF 80 (213)
T ss_pred CEEEEEEEECCcCcCCceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEE
Confidence 889999999999987 788998765 999999999999999999999999988654443234567777778899999
Q ss_pred EEEecCCCceEEEEEEE
Q 001573 96 SLRGDTKEEHLTIMRKI 112 (1051)
Q Consensus 96 ~~~~~~~~~~~~i~R~~ 112 (1051)
+|.+ .+..+.+.|.+
T Consensus 81 ~f~~--~~~~~~~~r~~ 95 (213)
T cd03279 81 TFQL--GGKKYRVERSR 95 (213)
T ss_pred EEEE--CCeEEEEEEec
Confidence 9985 46777777754
No 57
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.51 E-value=3.3e-07 Score=113.50 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=9.6
Q ss_pred HHHHHHHHhcCCCccc
Q 001573 59 LVCAIALALGGDTQLL 74 (1051)
Q Consensus 59 i~~Ai~~~L~g~~~~~ 74 (1051)
++.+|+.|=-|.|...
T Consensus 690 VLEgIRicR~GfPnr~ 705 (1930)
T KOG0161|consen 690 VLEGIRICRQGFPNRM 705 (1930)
T ss_pred cHHHHHHHHhhCcccc
Confidence 4556666666777633
No 58
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.9e-08 Score=113.09 Aligned_cols=136 Identities=11% Similarity=0.113 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhchHHHHHHHHHHHHHH
Q 001573 181 VQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKKAEYIAAKEQE 260 (1051)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 260 (1051)
+....-.+++..|.+....+..+.......-.....+..+...++......+++..+..+.........-.++-..+..+
T Consensus 150 EEISgSiElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i 229 (1141)
T KOG0018|consen 150 EEISGSIELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACI 229 (1141)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 33333457788888888888888888877777777788888788888888899999998888887777777888888899
Q ss_pred HHHHHHHHHHHhhhchhhchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001573 261 KDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLEKV 316 (1051)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1051)
.....++....+++..+....+....++.....+......++......+......+
T Consensus 230 ~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l 285 (1141)
T KOG0018|consen 230 EKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKL 285 (1141)
T ss_pred hhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888777777777666555555555555544444333
No 59
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.49 E-value=9.7e-09 Score=114.76 Aligned_cols=206 Identities=17% Similarity=0.183 Sum_probs=167.8
Q ss_pred HHHHhccCchHHHHHHHHhhCCCCcHHH-----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 155 VCEFAKLSPVKLLEETEKAVGDPQLPVQ-----HCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAE 229 (1051)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~g~~~l~~~-----~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 229 (1051)
+++++.+-|+++...|.+.....-|.+. ...|..++.++.+.......+...+.....-+..|+...+.+++-.+
T Consensus 140 i~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE 219 (1072)
T KOG0979|consen 140 IDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVE 219 (1072)
T ss_pred cCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4466677899999999887754444433 23477888999999999999999999999999999999999998887
Q ss_pred HHHHHHHHhcccchhchHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhchHhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001573 230 LLEKVESMKKKLPWLKYDMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRR 309 (1051)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1051)
...+.......+..+.....|..|.....++..+......+..++..+.+.+..+.....+++.+..+....+......+
T Consensus 220 ~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~ 299 (1072)
T KOG0979|consen 220 RVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQREL 299 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHH
Confidence 77777777777777777778888999999999999999999999999999999999999888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001573 310 MDFLEKVDQVGVQVQGKYKEMQELRRQEQSRQQRILKAREELAAAELDLQT 360 (1051)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 360 (1051)
......+......+.....++..+......++......+..+....+.+..
T Consensus 300 ~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~ 350 (1072)
T KOG0979|consen 300 NEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILD 350 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777777777777777777777777777777777777777666665543
No 60
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.42 E-value=3.5e-06 Score=104.70 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001573 370 KIEKLGSQILELGVQANQKRLQKSEKEKILNQNKLTLRQCSDRLKDMEDKN 420 (1051)
Q Consensus 370 ~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~ 420 (1051)
+..++...+...+.++..+..++......+..++..+..+..++..+...+
T Consensus 1063 ~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1063 QKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444433
No 61
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.37 E-value=1e-12 Score=127.60 Aligned_cols=78 Identities=27% Similarity=0.450 Sum_probs=63.9
Q ss_pred EEEEEEeccccc-cceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCc------eeEEEE
Q 001573 23 IIEIELHNFMTF-DHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEE------SGYIKI 95 (1051)
Q Consensus 23 i~~l~l~nf~~~-~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~------~a~v~i 95 (1051)
|++|.+.||++| ....++|.+|+++|+|||||||||+++||.|+++.......|+....++++.|.. .+.|.+
T Consensus 1 ~~~~~~~~fr~~~~~~~l~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (197)
T cd03278 1 LKKLELKGFKSFADKTTIPFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTL 80 (197)
T ss_pred CcEEEEeCCcCcCCCeeeecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEE
Confidence 568999999999 5889999999999999999999999999999997654444466666778776654 478888
Q ss_pred EEEec
Q 001573 96 SLRGD 100 (1051)
Q Consensus 96 ~~~~~ 100 (1051)
+|.+.
T Consensus 81 vfq~~ 85 (197)
T cd03278 81 TFDNS 85 (197)
T ss_pred EEEcC
Confidence 88863
No 62
>PRK03918 chromosome segregation protein; Provisional
Probab=99.29 E-value=2.3e-05 Score=97.37 Aligned_cols=114 Identities=19% Similarity=0.270 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEEeccCCcccccceEEEEEecCCCccccccccccCCchHHHHHHHHHHHhc--ccC
Q 001573 883 RNLVAQINETFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQ--DLT 960 (1051)
Q Consensus 883 ~~~~~~i~~~F~~~f~~l~~~g~~~l~~~~~~~~~~gl~i~v~~~~~~~~~~~~~~~lSGGErs~~~lalllal~--~~~ 960 (1051)
..++..++..|..+|+.++.+++-.+.... ....+.+.+.. +|. ...+..||||++.+++||+.+||. -..
T Consensus 739 ~~~~~~l~~~~~~if~~l~~~~~~~~~l~~---~~~~~~i~~l~-~g~---~~~~~~lS~G~~~~~~la~rlal~~~l~~ 811 (880)
T PRK03918 739 ERALSKVGEIASEIFEELTEGKYSGVRVKA---EENKVKLFVVY-QGK---ERPLTFLSGGERIALGLAFRLALSLYLAG 811 (880)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEEEec---CCCceEEEEeC-CCC---cCChhhCCHhHHHHHHHHHHHHHHHHhcC
Confidence 344667777788888888655543322111 12234555443 343 234566999999999999887764 346
Q ss_pred CCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 961 NCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 961 ~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
++||+||||++++||+.++..++..|...+.. ..|+|+|||+.
T Consensus 812 ~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~--~~~iiiith~~ 854 (880)
T PRK03918 812 NIPLLILDEPTPFLDEERRRKLVDIMERYLRK--IPQVIIVSHDE 854 (880)
T ss_pred CCCeEEEeCCCcccCHHHHHHHHHHHHHHHhc--CCEEEEEECCH
Confidence 78999999999999999999999988776542 57999999994
No 63
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.27 E-value=1.9e-11 Score=120.19 Aligned_cols=107 Identities=64% Similarity=1.023 Sum_probs=89.9
Q ss_pred eEEEEEecCCCccccccccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEE
Q 001573 920 ILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCF 999 (1051)
Q Consensus 920 l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i 999 (1051)
.++.++++.+.+....++..|||||+.++.++.+||++...+.|++++||++++||+.+...+++.|.........+++|
T Consensus 107 ~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~vi 186 (213)
T cd03277 107 IELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYF 186 (213)
T ss_pred HhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEE
Confidence 34556766555556677888999999999999999988888899999999999999999999999888876521246899
Q ss_pred EEcCCCCCCCCCCCCeEEEEEecCCCC
Q 001573 1000 LLTPKLLPDLEYSEACSILNIMNGPWI 1026 (1051)
Q Consensus 1000 ~iTp~~l~~~~~~~~~~v~~~~~g~~~ 1026 (1051)
++||++...+.+.+.++|+++.+|+++
T Consensus 187 iith~~~~~~~~~~~~~v~~l~~g~~~ 213 (213)
T cd03277 187 LITPKLLPGLNYHEKMTVLCVYNGPHI 213 (213)
T ss_pred EEchhhccCCcccCceEEEEEecCccC
Confidence 999999888888888999998899875
No 64
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.26 E-value=1.1e-11 Score=121.89 Aligned_cols=78 Identities=19% Similarity=0.344 Sum_probs=59.2
Q ss_pred ceEEEEEEeccccccceE-E-ecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCC-----ceeEE
Q 001573 21 GNIIEIELHNFMTFDHLI-C-KPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGE-----ESGYI 93 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~~~~-i-~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~-----~~a~v 93 (1051)
|.|++|+|.||++|.... + ++++.+++|+|||||||||+++||+|++|.... ..|...+.+++..+. +.+.+
T Consensus 1 ~~~~~l~l~nfk~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~~~~G~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~ 79 (212)
T cd03274 1 LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGFRAS-KMRQKKLSDLIHNSAGHPNLDSCSV 79 (212)
T ss_pred CeEEEEEEECcccCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHHHHhccCHH-HhhhhhHHHHhcCCCCCCCCceEEE
Confidence 789999999999998443 3 466789999999999999999999999886532 224445666665543 35677
Q ss_pred EEEEEe
Q 001573 94 KISLRG 99 (1051)
Q Consensus 94 ~i~~~~ 99 (1051)
...|..
T Consensus 80 ~~~~~~ 85 (212)
T cd03274 80 EVHFQE 85 (212)
T ss_pred EEEEEe
Confidence 777754
No 65
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.23 E-value=4.5e-05 Score=95.14 Aligned_cols=144 Identities=10% Similarity=0.071 Sum_probs=104.2
Q ss_pred cCchHHHHHHHHhhCCCCcHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001573 161 LSPVKLLEETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKK 240 (1051)
Q Consensus 161 ~~~~~~~~~~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 240 (1051)
-.|.+|+.+|++++|.. ....+...++...+.++..+...+..+...+..|+.+.+.+.++..+..++..+...
T Consensus 276 r~~eERR~liEEAag~r------~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~e 349 (1486)
T PRK04863 276 RHANERRVHLEEALELR------RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEK 349 (1486)
T ss_pred hCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999998722 556788889999999999999999999999999999999999988887774443333
Q ss_pred cch--hchHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001573 241 LPW--LKYDMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRM 310 (1051)
Q Consensus 241 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1051)
+.. ..+..+...+......+......+..+..++..++.++..+...+..+...+...+..+......+.
T Consensus 350 i~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~ 421 (1486)
T PRK04863 350 IERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQ 421 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 3455566666667777777777777776666666666666666666666666665555544444443
No 66
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=99.20 E-value=1.5e-05 Score=91.41 Aligned_cols=174 Identities=15% Similarity=0.139 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 703 LAKLVDQAADLNIQQFKYAIEIKNLLVEIVSCKWSYAEKHMASIEFDAKIRELEFNLKQHEKLALQASLHYEDCKKEVEH 782 (1051)
Q Consensus 703 ~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~ 782 (1051)
...+..++..+..........+. .....+..+...+..+..++..+......+...+..+......++..+..
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~-------~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~ 422 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIA-------EQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLER 422 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333 33333444444444444444445555555555555555555555555666
Q ss_pred HHHHHHHHHHHHHH--hhcCCHHHHHHHhccCCCHHHHHHHHHHHHHhchhccCCCHHHHH-HHHHHHHHHHHHHHHHHH
Q 001573 783 CRKHLSDAKRQAES--IAFITPELEKEFLEMPTTIEELEAAIQDNISQANSIFFLNQNILQ-EYEHRQRQIEDLSTKQEA 859 (1051)
Q Consensus 783 ~~~~l~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 859 (1051)
+...+...++.+.. +..+...+.. ....+..++..+...++. +++|+.++. +|+.+..++..+..+..+
T Consensus 423 ~~~~L~~ikr~l~k~~lpgip~~y~~-------~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~d 494 (569)
T PRK04778 423 YRNKLHEIKRYLEKSNLPGLPEDYLE-------MFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEE 494 (569)
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHH-------HHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555554432 2233332222 345677888999999999 999998888 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001573 860 DKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRN 896 (1051)
Q Consensus 860 l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~F~~~ 896 (1051)
+......+...|.. .++|+..|..|+..|...
T Consensus 495 L~~~a~~lE~~Iqy-----~nRfr~~~~~V~~~f~~A 526 (569)
T PRK04778 495 LVENATLTEQLIQY-----ANRYRSDNEEVAEALNEA 526 (569)
T ss_pred HHHHHHHHHHHHHH-----HhccCCCCHHHHHHHHHH
Confidence 99999999999987 677778888888888764
No 67
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=99.17 E-value=5e-10 Score=109.77 Aligned_cols=51 Identities=35% Similarity=0.486 Sum_probs=47.8
Q ss_pred ceEEEEEEeccccccceEEecCCc-eeEEEcCCCCChHHHHHHHHHHhcCCC
Q 001573 21 GNIIEIELHNFMTFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALALGGDT 71 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L~g~~ 71 (1051)
|+|.+|.|.||+||.+..|.|+++ .|+|||||||||||++|||+.||.-..
T Consensus 1 mrLrkiSl~nfr~f~~lditf~e~~ttIivgpNGsGKTtvLdair~aL~~fi 52 (440)
T COG3950 1 MRLRKISLNNFRCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKFI 52 (440)
T ss_pred CccchhhhhhhhhhhhceeecCCCceEEEECCCCCChhhHHHHHHHHHHhhc
Confidence 789999999999999999999988 999999999999999999999996443
No 68
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=0.00013 Score=93.09 Aligned_cols=181 Identities=13% Similarity=0.177 Sum_probs=120.7
Q ss_pred CHHHHHHHHHHHHHhchhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001573 814 TIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETF 893 (1051)
Q Consensus 814 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~F 893 (1051)
....++..+..+...++. .+|..+..+|....-+.......+.+|......++..+......-...||...
T Consensus 1076 ~~k~le~qi~~l~~eL~e---------~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~n~~~ 1146 (1311)
T TIGR00606 1076 RQKGYEKEIKHFKKELRE---------PQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEINKII 1146 (1311)
T ss_pred HHHHHHHHHHHHHHHHcc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554432 46777777888777777777888888888888887777777777788888888
Q ss_pred HHHHhcCCcceE---EEEeccCCc-cc---ccc-eEEEEEecCCCcccccc-ccccCCchHHHHHHHHHHHhcc--cCCC
Q 001573 894 SRNFQEMAVAGE---VSLDEHESD-FD---KFG-ILIKVKFRQSGQLEVLS-AHHQSGGERSVSTILYLVSLQD--LTNC 962 (1051)
Q Consensus 894 ~~~f~~l~~~g~---~~l~~~~~~-~~---~~g-l~i~v~~~~~~~~~~~~-~~~lSGGErs~~~lalllal~~--~~~~ 962 (1051)
..+|+..+.|.- +.+..+.++ .. ..+ ..+.|..+.|.. .++ ...||||++.++.|.+++||.. +.++
T Consensus 1147 ~~~w~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~ 1224 (1311)
T TIGR00606 1147 RDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDT--ALDMRGRCSAGQKVLASLIIRLALAETFCLNC 1224 (1311)
T ss_pred HHHHHHHcCccHHHHhhcCCCCChHHHHHHHcCchHHHhccCCCCe--ecCCCCCCchhhhhHhhHhHHHHHHHHHhcCC
Confidence 889888876532 444311110 00 011 223333333421 232 3569999999777666666543 3678
Q ss_pred CceEeeccccCCChHHHHHHHHHHHHHhc---CCCCCeEEEEcCCC
Q 001573 963 PFRVVDEINQGMDPINERKMFQQLVRAAS---QPNTPQCFLLTPKL 1005 (1051)
Q Consensus 963 Pf~vlDEid~~lD~~n~~~~~~~l~~~~~---~~~~~Q~i~iTp~~ 1005 (1051)
|+++|||++++||+.+...+...|..+.. ...+.++|||||..
T Consensus 1225 ~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~ 1270 (1311)
T TIGR00606 1225 GIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE 1270 (1311)
T ss_pred CEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH
Confidence 89999999999999999988887776532 12367999999993
No 69
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.13 E-value=8.1e-05 Score=93.69 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=28.9
Q ss_pred EEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCccc
Q 001573 38 ICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLL 74 (1051)
Q Consensus 38 ~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~ 74 (1051)
+|.++ |-|-|+|-||+||||++.||.+--|..|...
T Consensus 13 El~lD-G~t~i~GTNG~GKTTlLRlip~FYGa~p~rl 48 (1201)
T PF12128_consen 13 ELKLD-GHTHICGTNGVGKTTLLRLIPFFYGADPSRL 48 (1201)
T ss_pred EEecC-CceeeecCCCCcHHHHHHHHHHhcCCCcccc
Confidence 56665 5679999999999999999987666666654
No 70
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.03 E-value=2.7e-10 Score=107.36 Aligned_cols=68 Identities=37% Similarity=0.475 Sum_probs=55.7
Q ss_pred EEEecccccc-ceEEecCC-ceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccccCCceeEEEEEE
Q 001573 26 IELHNFMTFD-HLICKPGS-RLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISL 97 (1051)
Q Consensus 26 l~l~nf~~~~-~~~i~f~~-~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~ 97 (1051)
|.+.||++|. +..|.|.+ ++++|+|||||||||+++||.|+++.......| .+.++.|...+.++++|
T Consensus 2 i~~~~~~~~~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~ 71 (162)
T cd03227 2 IVLGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRR----RSGVKAGCIVAAVSAEL 71 (162)
T ss_pred ceeCCCCEEEeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc----cCcccCCCcceeeEEEE
Confidence 6788999987 77888764 599999999999999999999999998876656 34446676677777766
No 71
>PF13166 AAA_13: AAA domain
Probab=98.89 E-value=1.2e-06 Score=105.49 Aligned_cols=146 Identities=18% Similarity=0.272 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcceEEEEeccCCcccccceEEEE
Q 001573 845 HRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLDEHESDFDKFGILIKV 924 (1051)
Q Consensus 845 ~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~F~~~f~~l~~~g~~~l~~~~~~~~~~gl~i~v 924 (1051)
.+...+..+...+..+...+..+...+..+...... . ......|...+..+|. ..+.|.... + ..|..|..
T Consensus 421 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~----~~~~~~iN~~L~~~g~-~~~~l~~~~-~--~~~y~l~~ 491 (712)
T PF13166_consen 421 ELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKN-T----EPAADRINEELKRLGF-SNFSLEIVD-D--DKGYKLQR 491 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h----HHHHHHHHHHHHHhCC-CCeEEEEec-C--CCeEEEEE
Confidence 333444444445555555555555555555443331 1 2333344455666633 344554111 1 23433333
Q ss_pred EecCCCccccccccccCCchHHHHHHHHHHHhcc-----cCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEE
Q 001573 925 KFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQD-----LTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCF 999 (1051)
Q Consensus 925 ~~~~~~~~~~~~~~~lSGGErs~~~lalllal~~-----~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i 999 (1051)
+++.+ + ...||-|||..+|+||-||... +...+++|||++=.-||..++..++.+|++........|+|
T Consensus 492 --~~~~~--~--~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~Qvi 565 (712)
T PF13166_consen 492 --KGGSK--P--AKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVI 565 (712)
T ss_pred --CCCCc--c--cCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEE
Confidence 22221 2 3569999999999999999654 12457889999999999999999999999986222489999
Q ss_pred EEcCCC
Q 001573 1000 LLTPKL 1005 (1051)
Q Consensus 1000 ~iTp~~ 1005 (1051)
|+||..
T Consensus 566 IlTHn~ 571 (712)
T PF13166_consen 566 ILTHNL 571 (712)
T ss_pred EEeCcH
Confidence 999983
No 72
>PRK01156 chromosome segregation protein; Provisional
Probab=98.89 E-value=0.00088 Score=83.06 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=57.4
Q ss_pred ccccccCCchHHHHHHHHHHHhcc--cCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCC-CCeEEEEcCCC
Q 001573 935 LSAHHQSGGERSVSTILYLVSLQD--LTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPN-TPQCFLLTPKL 1005 (1051)
Q Consensus 935 ~~~~~lSGGErs~~~lalllal~~--~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~-~~Q~i~iTp~~ 1005 (1051)
.++..||||++.+++||++||+.. +.++||++|||+++|||+.+...++.+|...+...+ .+|+|||||+.
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~ 870 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR 870 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch
Confidence 345569999999999999988744 467899999999999999999998887765433222 36999999995
No 73
>PF11398 DUF2813: Protein of unknown function (DUF2813); InterPro: IPR022602 This entry contains YbjD from Escherichia coli (strain K12), which is a conserved protein with a nucleotide triphosphate binding domain.
Probab=98.81 E-value=1.2e-08 Score=106.62 Aligned_cols=61 Identities=26% Similarity=0.288 Sum_probs=51.7
Q ss_pred ceEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCccccccccccccc
Q 001573 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYV 84 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i 84 (1051)
|+|.+|+|.||+++....|.|++ +|+++|+|++||||+++||+++|+.... .|.=+..||=
T Consensus 1 M~l~~i~i~~FRgi~~~~~~l~~-~t~liG~N~~GKss~l~Al~~~l~~~~~--~~~f~~~DFh 61 (373)
T PF11398_consen 1 MKLERIEISNFRGIKRLSLPLDD-NTVLIGENNWGKSSLLDALSLLLSPSRR--LYQFTESDFH 61 (373)
T ss_pred CeEEEEEEeccCccceEEEEecC-ceEEEcCCCccHhHHHHHHHHHhCCCcc--ccccCHHHhC
Confidence 89999999999999999999987 8999999999999999999999987643 1322445654
No 74
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.80 E-value=2.3e-08 Score=97.35 Aligned_cols=91 Identities=32% Similarity=0.477 Sum_probs=72.7
Q ss_pred cccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCe
Q 001573 936 SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEAC 1015 (1051)
Q Consensus 936 ~~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~ 1015 (1051)
.+..|||||+.++++|..+++|.+.++||++|||++++||..++..++++|.+......+.++|+||.|.+..+...+.+
T Consensus 106 ~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v 185 (198)
T cd03276 106 DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDV 185 (198)
T ss_pred cccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccce
Confidence 45679999999999999999998899999999999999999999999998887654212467788887776766555777
Q ss_pred EEEEEecCCCCC
Q 001573 1016 SILNIMNGPWIE 1027 (1051)
Q Consensus 1016 ~v~~~~~g~~~~ 1027 (1051)
.|+- +..|.-|
T Consensus 186 ~~~~-~~~~~~~ 196 (198)
T cd03276 186 KVFR-MKDPRGP 196 (198)
T ss_pred eEEE-ecCCCCC
Confidence 7774 5555544
No 75
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.78 E-value=0.0018 Score=79.96 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 334 RRQEQSRQQRILKAREELAAAELDLQTVPAYEPPHDKIEKLGSQILELGVQANQKRLQKSEK 395 (1051)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l 395 (1051)
...+..++.++..+..++..+...+... ......+...+..++..+..++..+.......
T Consensus 964 ~~k~tslE~~ls~L~~~~~~l~~e~~~~--~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~ 1023 (1822)
T KOG4674|consen 964 HKKITSLEEELSELEKEIENLREELELS--TKGKEDKLLDLSREISSLQNELKSLLKAASQA 1023 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccchhhhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444333221 22233334444444444444444444333333
No 76
>PF04310 MukB: MukB N-terminal; InterPro: IPR007406 This is the N-terminal region of MukB. MukB is involved in the segregation and condensation of prokaryotic chromosomes. MukE (IPR007385 from INTERPRO) along with MukF (IPR005582 from INTERPRO) interact with MukB in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side []. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif. In other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0007059 chromosome segregation, 0030261 chromosome condensation, 0009295 nucleoid; PDB: 1QHL_A 3EUK_H 3EUJ_A.
Probab=98.65 E-value=1.4e-07 Score=85.68 Aligned_cols=89 Identities=22% Similarity=0.228 Sum_probs=62.0
Q ss_pred CceEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHh--------cCCCcc-----ccccccccccccc
Q 001573 20 PGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALAL--------GGDTQL-----LGRATSIGAYVKR 86 (1051)
Q Consensus 20 ~~~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L--------~g~~~~-----~~r~~~~~~~i~~ 86 (1051)
.|++.+|.|.||.-|-..++++..-+|.+.|.||+||||+|.|+..+| ++...- ..|...+...+..
T Consensus 4 r~k~~SLtlVNwNG~fartfdLd~lvTtL~G~NGAGKsT~m~Af~taLIPD~~~l~f~ntteag~ts~srDkgl~gkL~~ 83 (227)
T PF04310_consen 4 RGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFITALIPDQTLLHFRNTTEAGATSGSRDKGLFGKLGP 83 (227)
T ss_dssp B-EEEEEEEECETTECEEEEEHHCCCCCCCCSTTCCHHHHHHHHHHHHS--TTT-----TTTSS-S-TSS--STCCCC-S
T ss_pred ccccceEEEEeecCeeeeEeehhhheEeeecCCCCcchhhHHHHHHHhcccceEEeecccccccccccccchhhhhhcCC
Confidence 489999999999999999999999999999999999999999999999 222211 1132233334444
Q ss_pred CCceeEEEEEEEecCCCceEEEEE
Q 001573 87 GEESGYIKISLRGDTKEEHLTIMR 110 (1051)
Q Consensus 87 g~~~a~v~i~~~~~~~~~~~~i~R 110 (1051)
| .|++.+.+.|+.+...+...|
T Consensus 84 g--~~ya~ldv~ns~~qR~l~gVr 105 (227)
T PF04310_consen 84 G--SCYAALDVVNSRGQRLLFGVR 105 (227)
T ss_dssp S--EEEEEEEEEETTTEEEEEEEE
T ss_pred C--ceEEeeeecccCCcEEEEEEE
Confidence 3 677777777754444444444
No 77
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.62 E-value=0.0029 Score=73.32 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001573 843 YEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLV 886 (1051)
Q Consensus 843 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~ 886 (1051)
++.+..+++.+..++......+.+....+..+.......+.+++
T Consensus 673 l~k~~~Eld~l~~qL~ssq~~L~e~d~~L~~le~Errk~lEE~l 716 (775)
T PF10174_consen 673 LEKLRQELDQLKAQLESSQQSLMERDQELNALEAERRKQLEEVL 716 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444445555555555554444444433
No 78
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=98.62 E-value=3.3e-08 Score=108.15 Aligned_cols=63 Identities=29% Similarity=0.419 Sum_probs=54.1
Q ss_pred ceEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcccccccccccccc
Q 001573 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVK 85 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~ 85 (1051)
|.|.+|+|.||+||..+++.|..|+|+|+|+|-+|||+|+|||+.+|...+. . ..-..+|+.+
T Consensus 1 M~L~~v~I~nFR~i~~lsl~~~~g~~vlIGeN~~GKsslLdAL~l~l~~~~~-~-~~f~~~d~~~ 63 (581)
T COG3593 1 MHLERVKIKNFRGINRLSLEFEEGLNVLIGENNSGKSSLLDALRLLLDPESD-L-YSFTLDDFHF 63 (581)
T ss_pred CcceeEEecccceeeeeeeeecCCceEEEcCCCcchHHHHHHHHHHcCCccc-c-cceeeccCcc
Confidence 8999999999999999999999999999999999999999999999987532 1 2234556654
No 79
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.61 E-value=7.6e-05 Score=74.81 Aligned_cols=36 Identities=33% Similarity=0.443 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 623 LRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKL 658 (1051)
Q Consensus 623 l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l 658 (1051)
+..+++.....+..+...+.........++..+..+
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l 41 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASL 41 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444333333333333333333333
No 80
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.61 E-value=0.0002 Score=71.86 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=16.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 189 KSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVR 225 (1051)
Q Consensus 189 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~ 225 (1051)
+...+..+...+..+...+..........+.++..+.
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~ 42 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQ 42 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433
No 81
>COG1106 Predicted ATPases [General function prediction only]
Probab=98.60 E-value=2.8e-08 Score=102.95 Aligned_cols=50 Identities=32% Similarity=0.516 Sum_probs=43.5
Q ss_pred eEEEEEEeccccccceEEe-cCCceeEEEcCCCCChHHHHHHHHHHhcCCCc
Q 001573 22 NIIEIELHNFMTFDHLICK-PGSRLNLVIGPNGSGKSSLVCAIALALGGDTQ 72 (1051)
Q Consensus 22 ~i~~l~l~nf~~~~~~~i~-f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~ 72 (1051)
+|.++++.||+||.+..+. |+ ++|+|+|+|||||||+++||.+..+--.+
T Consensus 1 MI~~~~IkNFkSf~e~~~~~~~-~in~I~G~N~sGKSNlleAl~f~~~~~~~ 51 (371)
T COG1106 1 MIKSFKIKNFKSFRELELEDFG-KINIIYGANGAGKSNLLEALYFLKGLISP 51 (371)
T ss_pred CceEEEecccccHHHhhhcccc-ceEEEEcCCCCchhHHHHHHHHHHHhccC
Confidence 4899999999999988776 64 49999999999999999999998765443
No 82
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.53 E-value=2.6e-07 Score=88.10 Aligned_cols=64 Identities=36% Similarity=0.614 Sum_probs=58.1
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+||||+.+++++..++.+.+.+.|+++|||++++||+.+...+++.|.+.+.. +.++|++||..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~--g~tiIiiSH~~ 158 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH--TSQFIVITLKK 158 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEECCH
Confidence 89999999999999998878888999999999999999999999988877652 58999999984
No 83
>PF13175 AAA_15: AAA ATPase domain
Probab=98.52 E-value=7.3e-08 Score=108.75 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=57.0
Q ss_pred cccccccCCchHHHHHHHHHHHhccc--CCCC----ceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCC
Q 001573 934 VLSAHHQSGGERSVSTILYLVSLQDL--TNCP----FRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPK 1004 (1051)
Q Consensus 934 ~~~~~~lSGGErs~~~lalllal~~~--~~~P----f~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~ 1004 (1051)
++....+|.|++.+..++++++.... ...+ ++++||+.++|-|...+.+++.|.+.+. ..+.|||+-||-
T Consensus 336 ~~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~-~~~~QiiitTHS 411 (415)
T PF13175_consen 336 SIPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSK-NNNIQIIITTHS 411 (415)
T ss_pred cCChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhc-cCCCEEEEECCC
Confidence 45566799999999999988875432 2223 8999999999999999999999998876 357899999986
No 84
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.49 E-value=2.4e-07 Score=90.26 Aligned_cols=75 Identities=21% Similarity=0.391 Sum_probs=61.4
Q ss_pred cccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCC
Q 001573 936 SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEA 1014 (1051)
Q Consensus 936 ~~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~ 1014 (1051)
.+..|||||+.++++|..+++....|.++++|||++++||+.+...+.+.|.+... +.++|++||.. .-+.+.+.
T Consensus 110 ~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~---~~tiIiitH~~-~~~~~~d~ 184 (197)
T cd03278 110 RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK---ETQFIVITHRK-GTMEAADR 184 (197)
T ss_pred chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc---CCEEEEEECCH-HHHhhcce
Confidence 35679999999999999988655677889999999999999999999998887754 58899999995 22344444
No 85
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.47 E-value=6.7e-08 Score=94.37 Aligned_cols=46 Identities=33% Similarity=0.542 Sum_probs=40.9
Q ss_pred ceEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHh
Q 001573 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALAL 67 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L 67 (1051)
|+|.+|.++||++|....++. +++|+|+|.||+||||+++|+.++=
T Consensus 1 ~~l~si~vknyRs~r~l~lei-~~~nviIGANGaGKSn~~~~l~~l~ 46 (373)
T COG4637 1 MMLVSIKVKNYRSFRSLDLEI-RRVNVIIGANGAGKSNFYDALRLLA 46 (373)
T ss_pred CccchhhhhcchhHHhccccc-cceEEEEcCCCCchhHHHHHHHHHH
Confidence 789999999999999877755 6699999999999999999998754
No 86
>PF13166 AAA_13: AAA domain
Probab=98.47 E-value=0.00032 Score=84.81 Aligned_cols=42 Identities=33% Similarity=0.468 Sum_probs=35.6
Q ss_pred cccccc--ceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCC
Q 001573 30 NFMTFD--HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDT 71 (1051)
Q Consensus 30 nf~~~~--~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~ 71 (1051)
||++|. ..++++.+++|+|+|.|||||||+...|.-+-++..
T Consensus 1 n~~~~~~~~~~~~~~~~~n~IYG~NGsGKStlsr~l~~~~~~~~ 44 (712)
T PF13166_consen 1 NYASFDNWDNELDEFKKINLIYGRNGSGKSTLSRILKSLCRGRG 44 (712)
T ss_pred CeeeecCCCccCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC
Confidence 788887 567777788999999999999999999998765543
No 87
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.47 E-value=1e-05 Score=86.84 Aligned_cols=147 Identities=14% Similarity=0.159 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcce-EEEEe-ccC-C---c-c----------------cccc-
Q 001573 864 LKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAG-EVSLD-EHE-S---D-F----------------DKFG- 919 (1051)
Q Consensus 864 ~~~l~~~i~~l~~~~~~~~~~~~~~i~~~F~~~f~~l~~~g-~~~l~-~~~-~---~-~----------------~~~g- 919 (1051)
+..++..+..+-..+.......+..++..|..++..+.++. .+.+. ... . + + ...|
T Consensus 179 l~~w~~~L~~~g~~i~~~R~~~~~~l~~~~~~~~~~l~~~~~~~~l~y~~~~~~~~~~~~~~L~~~~~~d~~~g~T~~GP 258 (365)
T TIGR00611 179 LEVWDSQLAELGAKVSAWRAEFIEKLEPEAQKAHQLLLPELESLSLFYRGELWDKETDYAEALARNFERDLERGYTLVGP 258 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEeCchHHHHHHHHHHHHHhHHHHHHcCCCCCCc
Confidence 55666666666666667777777888888888888875432 34443 110 0 0 0 0112
Q ss_pred --eEEEEEecCCCccccccccccCCchHHHHHHHHHHHhc-----ccCCCCceEeeccccCCChHHHHHHHHHHHHHhcC
Q 001573 920 --ILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQ-----DLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQ 992 (1051)
Q Consensus 920 --l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lalllal~-----~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~ 992 (1051)
-++.+..+ |.+. ...+|+||+-.+++|+.||.. .....|+++|||+.++||+.++..+++.|...
T Consensus 259 HRdDl~~~~~-g~~~----~~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--- 330 (365)
T TIGR00611 259 HRDDLRFRLN-GLPV----EDFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--- 330 (365)
T ss_pred chhceEEEEC-CEEH----HHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---
Confidence 11223322 3221 223899999999999999952 23467999999999999999999988877532
Q ss_pred CCCCeEEEEcCCC--CCCCCCCCCeEEEEE
Q 001573 993 PNTPQCFLLTPKL--LPDLEYSEACSILNI 1020 (1051)
Q Consensus 993 ~~~~Q~i~iTp~~--l~~~~~~~~~~v~~~ 1020 (1051)
+.|+|+.||.. ++.+.+.....++.+
T Consensus 331 --~~qv~it~~~~~~~~~~~~~~~~~~~~~ 358 (365)
T TIGR00611 331 --GVQVFVTAISLDHLKEMWDPNRVTIALV 358 (365)
T ss_pred --CCEEEEEecChhhccchhcccceEEEEE
Confidence 46999999873 444544455555544
No 88
>COG5293 Predicted ATPase [General function prediction only]
Probab=98.42 E-value=0.0037 Score=64.47 Aligned_cols=35 Identities=37% Similarity=0.536 Sum_probs=31.5
Q ss_pred EEecCCceeEEEc-----------CCCCChHHHHHHHHHHhcCCCc
Q 001573 38 ICKPGSRLNLVIG-----------PNGSGKSSLVCAIALALGGDTQ 72 (1051)
Q Consensus 38 ~i~f~~~~~~I~G-----------~NGsGKSti~~Ai~~~L~g~~~ 72 (1051)
++.|.||+|+|.| .||-||||++..|.||||+.-.
T Consensus 20 ~vkFnpGlNIVlae~red~~~~~~tnglGKSTlie~i~Fclg~ti~ 65 (591)
T COG5293 20 PVKFNPGLNIVLAEIREDENRKKDTNGLGKSTLIELIDFCLGSTID 65 (591)
T ss_pred eeeeCCCceEEeeeccCcccccccccCcchhhHHHHHHHHhccccc
Confidence 4678999999998 4999999999999999999765
No 89
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.40 E-value=2.3e-07 Score=83.26 Aligned_cols=39 Identities=33% Similarity=0.436 Sum_probs=33.2
Q ss_pred EEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCccccc
Q 001573 38 ICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGR 76 (1051)
Q Consensus 38 ~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r 76 (1051)
.++|.+.+|+|+|.||||||||+.||..+.|-.+...++
T Consensus 32 ~LeF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~ 70 (233)
T COG3910 32 RLEFRAPITFITGENGSGKSTLLEAIAAGMGFNAAGGGK 70 (233)
T ss_pred hccccCceEEEEcCCCccHHHHHHHHHhhccccccCCCc
Confidence 578998999999999999999999999988666554444
No 90
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.39 E-value=6.6e-07 Score=83.06 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=55.5
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..||||+++++|||=.||+. =...+|||++++|||.-+..|++.|.++|.. +.=.||+||.+
T Consensus 134 P~qLSGGQqQRVAIARALaM~----P~vmLFDEPTSALDPElv~EVL~vm~~LA~e--GmTMivVTHEM 196 (240)
T COG1126 134 PAQLSGGQQQRVAIARALAMD----PKVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMIIVTHEM 196 (240)
T ss_pred ccccCcHHHHHHHHHHHHcCC----CCEEeecCCcccCCHHHHHHHHHHHHHHHHc--CCeEEEEechh
Confidence 456999999999999999863 2367999999999999999999999999975 78889999995
No 91
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.35 E-value=7.7e-07 Score=90.81 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=62.3
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCe
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEAC 1015 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~ 1015 (1051)
+..|||||+.+++||..+++..+.|.|+++|||++++||...+..+.+.|.+.+. .+.++|+|||.. .-+.+.+.+
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~--~g~~vi~isH~~-~~~~~~d~i 228 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG--PNFQFIVISLKE-EFFSKADAL 228 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc--CCcEEEEEECCH-HHHhhCCeE
Confidence 4569999999999999999766678889999999999999999999998887754 278999999982 223444543
No 92
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.33 E-value=0.026 Score=70.34 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 845 HRQRQIEDLSTKQEADKKELKRFLAEIDAL 874 (1051)
Q Consensus 845 ~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l 874 (1051)
.+...++.+...+..+...+......+..+
T Consensus 841 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~l 870 (1822)
T KOG4674|consen 841 NAQNLVDELESELKSLLTSLDSVSTNIAKL 870 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443333
No 93
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.31 E-value=1.4e-06 Score=82.24 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=53.0
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
|||||+.+++++..++.. .|+++|||++.+||..+...+.+.|.+.... +.++|++||+.
T Consensus 81 lS~G~~~r~~l~~~l~~~----~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~--~~tii~~sh~~ 140 (157)
T cd00267 81 LSGGQRQRVALARALLLN----PDLLLLDEPTSGLDPASRERLLELLRELAEE--GRTVIIVTHDP 140 (157)
T ss_pred CCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 899999999999998863 7999999999999999999998888876652 57999999984
No 94
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.30 E-value=0.0019 Score=74.08 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=32.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001573 367 PHDKIEKLGSQILELGVQANQKRLQKSEKEKILNQNKLTLRQCSDRLKDMEDKNNKLLHAL 427 (1051)
Q Consensus 367 l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 427 (1051)
.+.+.+.++.+...|-.+.......+.+|+......+..+.....+|..|+.++...+..+
T Consensus 1687 ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1687 ARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344445555555555444444455555555555555555555555555555555554444
No 95
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.28 E-value=1.6e-06 Score=88.97 Aligned_cols=65 Identities=18% Similarity=0.340 Sum_probs=57.5
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPK 1004 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~ 1004 (1051)
+..||||++.++++|..|+..-..|.++++|||++++||+.....+++.|.+... +.++|+|||.
T Consensus 164 ~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~---g~~ii~iSH~ 228 (251)
T cd03273 164 LTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK---GSQFIVVSLK 228 (251)
T ss_pred ccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC---CCEEEEEECC
Confidence 4568999999999999888655667889999999999999999999998887753 7899999999
No 96
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.26 E-value=3.1e-06 Score=87.84 Aligned_cols=80 Identities=20% Similarity=0.176 Sum_probs=62.8
Q ss_pred EEEEecCCCccccccccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEE
Q 001573 922 IKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLL 1001 (1051)
Q Consensus 922 i~v~~~~~~~~~~~~~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~i 1001 (1051)
..+.+.++..... ....||||++.++++|..+++..+.+.|++++||++++||+.....+.+.|.+... ..++|++
T Consensus 154 ~~~~~~p~e~~~~-~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~---~~tii~i 229 (276)
T cd03241 154 FLFSTNPGEPLKP-LAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR---SHQVLCI 229 (276)
T ss_pred EEeecCCCCccch-hhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC---CCEEEEE
Confidence 3444444443222 24569999999999998877655568899999999999999999999998887754 6899999
Q ss_pred cCCC
Q 001573 1002 TPKL 1005 (1051)
Q Consensus 1002 Tp~~ 1005 (1051)
||+.
T Consensus 230 sH~~ 233 (276)
T cd03241 230 THLP 233 (276)
T ss_pred echH
Confidence 9984
No 97
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.26 E-value=0.013 Score=64.06 Aligned_cols=15 Identities=13% Similarity=-0.188 Sum_probs=8.8
Q ss_pred CCCCceEeeccccCC
Q 001573 960 TNCPFRVVDEINQGM 974 (1051)
Q Consensus 960 ~~~Pf~vlDEid~~l 974 (1051)
.|-|-|-|||=+.+.
T Consensus 498 ~~l~~~~l~~~~~~~ 512 (546)
T PF07888_consen 498 QPLGHYSLCEQGQPG 512 (546)
T ss_pred CCCCCcCcccCCCCC
Confidence 444457777766554
No 98
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.25 E-value=2.3e-06 Score=76.69 Aligned_cols=63 Identities=17% Similarity=0.274 Sum_probs=53.0
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPK 1004 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~ 1004 (1051)
+..||||||.++|||=-|. .+-|+.+|||.+++||+.=+..+..++.++.. ....=+++|||+
T Consensus 127 P~~LSGGqRQRvALARclv----R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~-E~~~TllmVTH~ 189 (231)
T COG3840 127 PGELSGGQRQRVALARCLV----REQPILLLDEPFSALDPALRAEMLALVSQLCD-ERKMTLLMVTHH 189 (231)
T ss_pred ccccCchHHHHHHHHHHHh----ccCCeEEecCchhhcCHHHHHHHHHHHHHHHH-hhCCEEEEEeCC
Confidence 5679999999999987553 67899999999999999999888876666544 456779999999
No 99
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.25 E-value=2.3e-06 Score=83.74 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=57.8
Q ss_pred cccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCC
Q 001573 936 SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEA 1014 (1051)
Q Consensus 936 ~~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~ 1014 (1051)
.+..|||||++++.||-.|| .+..+++|||.++|+|+.....++++|.++... +.=+++|||.+-.-..|.|.
T Consensus 136 ~i~~LSGGQ~QRV~lARAL~----~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~ 208 (254)
T COG1121 136 QIGELSGGQKQRVLLARALA----QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDR 208 (254)
T ss_pred cccccCcHHHHHHHHHHHhc----cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCE
Confidence 46789999999999998777 457799999999999999999999999887763 66677777775322344444
No 100
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.25 E-value=3.2e-06 Score=79.81 Aligned_cols=65 Identities=25% Similarity=0.509 Sum_probs=57.6
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 939 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 939 ~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
.+|||++.+++++..++.....+.|++++||++.++|+.....+...|.+.... ++++|++||..
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~--~~~vii~TH~~ 141 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK--GAQVIVITHLP 141 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEcCCH
Confidence 489999999999999997666688999999999999999999999888887653 68999999983
No 101
>PRK00064 recF recombination protein F; Reviewed
Probab=98.24 E-value=3.8e-05 Score=82.81 Aligned_cols=132 Identities=14% Similarity=0.225 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcc-eEEEEe--cc-C---Cc----c----------------c
Q 001573 864 LKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVA-GEVSLD--EH-E---SD----F----------------D 916 (1051)
Q Consensus 864 ~~~l~~~i~~l~~~~~~~~~~~~~~i~~~F~~~f~~l~~~-g~~~l~--~~-~---~~----~----------------~ 916 (1051)
+..++..+..+-..+.......+..++..|..+++.+..+ ..+.+. .. + ++ + .
T Consensus 173 l~~w~~~l~~~g~~I~~~R~~~~~~L~~~~~~~~~~l~~~~~~~~l~y~~~~~~~~~~~~~~~~~~l~~~~~~d~~~g~T 252 (361)
T PRK00064 173 LDVWDEQLAELGAAIAAARLEYLERLAPLAAKTHQEISPEFELASLSYQSSVEDDAEKIEEDLLEALAKNRERDRARGRT 252 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCcchhHHHHHHHHHHHHhHHHHHhcCCC
Confidence 5566677777777777777778888888888888887433 234443 11 0 00 0 0
Q ss_pred ccc---eEEEEEecCCCccccccccccCCchHHHHHHHHHHHhcc-----cCCCCceEeeccccCCChHHHHHHHHHHHH
Q 001573 917 KFG---ILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQD-----LTNCPFRVVDEINQGMDPINERKMFQQLVR 988 (1051)
Q Consensus 917 ~~g---l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lalllal~~-----~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~ 988 (1051)
..| -+|.+..+ |.+ + ...+|+||+..+++|+.+|-.. ..+.|+++|||+.++||+.++..+++.|..
T Consensus 253 ~~GpHrdDl~~~~~-g~~--~--~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~ 327 (361)
T PRK00064 253 LVGPHRDDLRFRIN-GLP--A--ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKG 327 (361)
T ss_pred CCCcchhceEEEEC-CCC--H--HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhc
Confidence 112 12333333 221 1 3448999999999999998432 467899999999999999999998887753
Q ss_pred HhcCCCCCeEEEEcCCC
Q 001573 989 AASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 989 ~~~~~~~~Q~i~iTp~~ 1005 (1051)
. ..|+|+.||+.
T Consensus 328 ~-----~~qv~it~~~~ 339 (361)
T PRK00064 328 L-----GAQVFITTTDL 339 (361)
T ss_pred c-----CCEEEEEcCCh
Confidence 2 45999888873
No 102
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.23 E-value=1e-06 Score=80.06 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=27.7
Q ss_pred ceEEecC-CceeEEEcCCCCChHHHHHHHHHHhcC
Q 001573 36 HLICKPG-SRLNLVIGPNGSGKSSLVCAIALALGG 69 (1051)
Q Consensus 36 ~~~i~f~-~~~~~I~G~NGsGKSti~~Ai~~~L~g 69 (1051)
+.+++|+ .|+|.|+||||+||||++..++-.+.-
T Consensus 19 ~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~ 53 (252)
T COG4604 19 DVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK 53 (252)
T ss_pred cceeeecCCceeEEECCCCccHHHHHHHHHHhccc
Confidence 3445655 679999999999999999999987753
No 103
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.5e-06 Score=89.49 Aligned_cols=79 Identities=32% Similarity=0.516 Sum_probs=61.5
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeEEEE
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSILN 1019 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~~v~~ 1019 (1051)
|||||+.+++||=++= .++|..+|||++.|||+.+++.++..|.+.+. +.=+|+|||++ .++..-| +|++
T Consensus 475 LSGGE~rRLAlAR~LL----~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~---~kTll~vTHrL-~~le~~d--rIiv 544 (573)
T COG4987 475 LSGGERRRLALARALL----HDAPLWLLDEPTEGLDPITERQVLALLFEHAE---GKTLLMVTHRL-RGLERMD--RIIV 544 (573)
T ss_pred CCchHHHHHHHHHHHH----cCCCeEEecCCcccCChhhHHHHHHHHHHHhc---CCeEEEEeccc-ccHhhcC--EEEE
Confidence 7999999999986542 38999999999999999999999999988776 77899999996 3333222 3444
Q ss_pred EecCCCCCC
Q 001573 1020 IMNGPWIEQ 1028 (1051)
Q Consensus 1020 ~~~g~~~~~ 1028 (1051)
+-||.-+..
T Consensus 545 l~~Gkiie~ 553 (573)
T COG4987 545 LDNGKIIEE 553 (573)
T ss_pred EECCeeeec
Confidence 447755543
No 104
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.20 E-value=3.2e-06 Score=82.96 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=55.4
Q ss_pred ccccCCchHHHHHHHHHHHhcc--cCCCCceEeeccccCCChHHHH-HHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQD--LTNCPFRVVDEINQGMDPINER-KMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~--~~~~Pf~vlDEid~~lD~~n~~-~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.++++|+.+|+.. ..+.|+++|||++.+||+..+. .+.+.|.+... ..+.++|++||+.
T Consensus 113 ~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~-~~~~~iiiitH~~ 183 (204)
T cd03240 113 RGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKS-QKNFQLIVITHDE 183 (204)
T ss_pred ccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-ccCCEEEEEEecH
Confidence 4679999999998887766533 4677999999999999999999 88888877654 2257999999983
No 105
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.20 E-value=3.2e-06 Score=86.70 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=63.9
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeE
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACS 1016 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~~ 1016 (1051)
...+|||++.+++||..++++...|.|+++|||++++||+.....+.+.|.+... ++++|++||.. .-+.+.+.+-
T Consensus 156 ~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~---~~~ii~~~h~~-~~~~~~d~i~ 231 (243)
T cd03272 156 MQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD---GAQFITTTFRP-ELLEVADKFY 231 (243)
T ss_pred ccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC---CCEEEEEecCH-HHHhhCCEEE
Confidence 4569999999999999998765667889999999999999999999998887654 67877777762 3334556555
Q ss_pred EEEEecC
Q 001573 1017 ILNIMNG 1023 (1051)
Q Consensus 1017 v~~~~~g 1023 (1051)
++.+-||
T Consensus 232 ~l~~~~~ 238 (243)
T cd03272 232 GVKFRNK 238 (243)
T ss_pred EEEEECC
Confidence 5543343
No 106
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.20 E-value=1.6e-06 Score=85.59 Aligned_cols=66 Identities=20% Similarity=0.361 Sum_probs=55.1
Q ss_pred ccccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 935 LSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 935 ~~~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..+..||||||.++|||-++|+. .-++||||.+++||+.+++.+++.|.++... .+.=+|++||..
T Consensus 134 r~p~~LSGGqkqRvaIA~vLa~~----P~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~ 199 (235)
T COG1122 134 RPPFNLSGGQKQRVAIAGVLAMG----PEILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDL 199 (235)
T ss_pred CCccccCCcceeeHHhhHHHHcC----CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcH
Confidence 45677999999999999999975 3388999999999999999999999887651 223488899984
No 107
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.20 E-value=3e-07 Score=109.60 Aligned_cols=38 Identities=29% Similarity=0.453 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 622 RLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQ 659 (1051)
Q Consensus 622 ~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~ 659 (1051)
.+......++.++..++..++++...+...+.....+.
T Consensus 458 eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~ 495 (859)
T PF01576_consen 458 ELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQ 495 (859)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433333333
No 108
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.19 E-value=1.4e-06 Score=71.82 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=40.2
Q ss_pred cccccCCchH-HHHHHHHHHHhcc---c-----CCCCceEeeccccCCChHHHHHHHHHHH
Q 001573 936 SAHHQSGGER-SVSTILYLVSLQD---L-----TNCPFRVVDEINQGMDPINERKMFQQLV 987 (1051)
Q Consensus 936 ~~~~lSGGEr-s~~~lalllal~~---~-----~~~Pf~vlDEid~~lD~~n~~~~~~~l~ 987 (1051)
....+||||+ ..++++|.+|+.. . ....+++|||.+.+||+.|...++..|.
T Consensus 29 ~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~ 89 (90)
T PF13558_consen 29 SFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLR 89 (90)
T ss_dssp EGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHH
T ss_pred cCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHh
Confidence 4667999999 7788888887532 1 1234789999999999999999988774
No 109
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.18 E-value=4e-06 Score=82.66 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=57.4
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEA 1014 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~ 1014 (1051)
..|||||+.++++|..|+. +.|+++|||++.+||+.+...+.+.|.+.... +.-+|++||+.+.-..+...
T Consensus 124 ~~LS~G~~qrl~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiii~sH~~~~~~~~~~~ 194 (201)
T cd03231 124 AQLSAGQQRRVALARLLLS----GRPLWILDEPTTALDKAGVARFAEAMAGHCAR--GGMVVLTTHQDLGLSEAGAR 194 (201)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCchhhhhccce
Confidence 4589999999999988874 56899999999999999999999988876542 56799999986554444333
No 110
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.17 E-value=0.012 Score=64.35 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001573 856 KQEADKKELKRFLAEIDALKE 876 (1051)
Q Consensus 856 ~~~~l~~~~~~l~~~i~~l~~ 876 (1051)
....+......|...|..++.
T Consensus 432 EKEql~~EkQeL~~yi~~Le~ 452 (546)
T PF07888_consen 432 EKEQLQEEKQELLEYIERLEQ 452 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444433
No 111
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.17 E-value=3.8e-06 Score=84.05 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=53.8
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..|+. +.++++|||++++||+.++..+.+.|.+.+. .+.-+|++||+.
T Consensus 131 ~~LSgG~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sH~~ 192 (213)
T cd03235 131 GELSGGQQQRVLLARALVQ----DPDLLLLDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDL 192 (213)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCH
Confidence 4589999999999988873 6789999999999999999999999988764 266799999984
No 112
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.16 E-value=3.8e-06 Score=82.22 Aligned_cols=62 Identities=26% Similarity=0.366 Sum_probs=53.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..|+. +.|+++|||.+++||+.+...+.+.|.+.... +.-+|++||..
T Consensus 126 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tili~sH~~ 187 (190)
T TIGR01166 126 HCLSGGEKKRVAIAGAVAM----RPDVLLLDEPTAGLDPAGREQMLAILRRLRAE--GMTVVISTHDV 187 (190)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeecc
Confidence 4589999999999987763 56899999999999999999999998887642 67899999973
No 113
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.16 E-value=1.8e-05 Score=94.13 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHhchhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001573 813 TTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINET 892 (1051)
Q Consensus 813 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~ 892 (1051)
.+++.|+.+...+...+..+...+.....-. -...+......+..++..+..+...+.++.+.|.....++-+.|..-
T Consensus 566 ~~l~~L~~En~~L~~~l~~le~~~~~~~~~~--p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~l 643 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLEEGNSQPVDAV--PTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSL 643 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcccc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777755542221110000 01112233334555666666666667777777766666665555544
Q ss_pred HHHHHhcCCcceEEEEe
Q 001573 893 FSRNFQEMAVAGEVSLD 909 (1051)
Q Consensus 893 F~~~f~~l~~~g~~~l~ 909 (1051)
|+.-. .+.++|.++|.
T Consensus 644 lGyki-~~~~~~~~rl~ 659 (722)
T PF05557_consen 644 LGYKI-DFMPNGRVRLT 659 (722)
T ss_dssp HSEEE-EEETTTEEEEE
T ss_pred hccee-eecCCCeEEEE
Confidence 43211 23677888887
No 114
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.0073 Score=66.54 Aligned_cols=110 Identities=14% Similarity=0.144 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 314 EKVDQVGVQVQGKYKEMQELRRQEQSRQQRILKAREELAAAELDLQTVPA-YEPPHDKIEKLGSQILELGVQANQKRLQK 392 (1051)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~l~~~~~~l~~~l~~l~~~~~~~~~~~ 392 (1051)
..+..+...+.....++..++.++...+..+..+.-+-..+..++..... ...-..+...|+.....-+.-+..++.++
T Consensus 472 t~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdql 551 (1118)
T KOG1029|consen 472 TEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQL 551 (1118)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444444433322 11222233344444443333444555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001573 393 SEKEKILNQNKLTLRQCSDRLKDMEDKNNKL 423 (1051)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 423 (1051)
..++.+....-.+++.+..++.++.......
T Consensus 552 delskE~esk~~eidi~n~qlkelk~~~~~q 582 (1118)
T KOG1029|consen 552 DELSKETESKLNEIDIFNNQLKELKEDVNSQ 582 (1118)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 6666666666666666666666665555443
No 115
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.15 E-value=0.071 Score=68.28 Aligned_cols=78 Identities=18% Similarity=0.121 Sum_probs=60.9
Q ss_pred eEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCCCcc-------cccccccccccccCC-----c
Q 001573 22 NIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQL-------LGRATSIGAYVKRGE-----E 89 (1051)
Q Consensus 22 ~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~-------~~r~~~~~~~i~~g~-----~ 89 (1051)
++.++-|.||-.|.+.+|+|++|+|+|+||||||||||||||.|+|+..... ..|+.+|.++++.|. .
T Consensus 3 ~~~R~gliN~~~~~~~~~~f~~g~~~~~G~NGsGKS~~lda~~~~ll~~~~~~~rln~~~~~~r~~~~~l~~g~~~~~~~ 82 (1353)
T TIGR02680 3 RPHRAGLVNLWYYDEQEFWFRDGRLLLRGNNGAGKSKVLELLLPFLLDGKLRPSRLEPDGDSRKRMAWNLLLGGVNHDER 82 (1353)
T ss_pred eeeeEEEEEeccccceEEecCCCeEEEECCCCCcHHHHHHHHHHHHhcCCCCccccCCCCCccccHHHHHcCCCCCCCCc
Confidence 4679999999999999999999999999999999999999988776433221 245668889998765 2
Q ss_pred eeEEEEEEEe
Q 001573 90 SGYIKISLRG 99 (1051)
Q Consensus 90 ~a~v~i~~~~ 99 (1051)
.+++.|+|..
T Consensus 83 ~~y~~~e~~~ 92 (1353)
T TIGR02680 83 VGYLWLEFGR 92 (1353)
T ss_pred ceeEEEEeec
Confidence 3444555543
No 116
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.15 E-value=4.3e-06 Score=83.57 Aligned_cols=62 Identities=21% Similarity=0.410 Sum_probs=53.4
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||+.++..+.+.|.+.... +.-+|++||..
T Consensus 133 ~~LSgG~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tvi~~sH~~ 194 (211)
T cd03225 133 FTLSGGQKQRVAIAGVLAM----DPDILLLDEPTAGLDPAGRRELLELLKKLKAE--GKTIIIVTHDL 194 (211)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCH
Confidence 4589999999999987763 56899999999999999999999999887652 67799999984
No 117
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.15 E-value=4.2e-06 Score=82.56 Aligned_cols=79 Identities=19% Similarity=0.301 Sum_probs=62.8
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeE
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACS 1016 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~~ 1016 (1051)
+..+|||++.++++|..+++..+.|.|+++|||++++||+..+..+.+.|.+.+. ..++|+|||.. .-..+.+.+-
T Consensus 125 ~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~---~~~~iivs~~~-~~~~~~d~v~ 200 (212)
T cd03274 125 ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK---NAQFIVISLRN-NMFELADRLV 200 (212)
T ss_pred hhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC---CCEEEEEECcH-HHHHhCCEEE
Confidence 4569999999999999998765677889999999999999999999988887654 78999999873 1123445544
Q ss_pred EEE
Q 001573 1017 ILN 1019 (1051)
Q Consensus 1017 v~~ 1019 (1051)
+++
T Consensus 201 ~~~ 203 (212)
T cd03274 201 GIY 203 (212)
T ss_pred EEE
Confidence 444
No 118
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=3.9e-06 Score=90.70 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=53.8
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
|||||+.+++||=.|. .|+|+++|||+++++|..++..+.+.|.+.++ +.=+|+|||.+
T Consensus 457 LSgGQ~QRlaLARAll----~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~---~ktvl~itHrl 515 (559)
T COG4988 457 LSGGQAQRLALARALL----SPASLLLLDEPTAHLDAETEQIILQALQELAK---QKTVLVITHRL 515 (559)
T ss_pred CCHHHHHHHHHHHHhc----CCCCEEEecCCccCCCHhHHHHHHHHHHHHHh---CCeEEEEEcCh
Confidence 8999999999997553 67999999999999999999999999999987 77899999995
No 119
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.14 E-value=3.9e-06 Score=83.56 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=53.4
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||+.+...+.+.|.+... .+.-+|++||+.
T Consensus 125 ~~LS~G~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~ 186 (208)
T cd03268 125 KGFSLGMKQRLGIALALLG----NPDLLILDEPTNGLDPDGIKELRELILSLRD--QGITVLISSHLL 186 (208)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCH
Confidence 4589999999999988773 5689999999999999999999998887764 267899999984
No 120
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.13 E-value=0.0041 Score=71.74 Aligned_cols=191 Identities=12% Similarity=0.072 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhcccchhchHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhchHhhHHHHHHHHHhhHHHHHHHHHHH
Q 001573 226 QRAELLEKVESMKKKLPWLKYDMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINEN 305 (1051)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (1051)
+..++..-++.+...-..+.......++..+++++......+..+ ++......+..+...+..+-..+..-.......
T Consensus 231 ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~v 308 (569)
T PRK04778 231 QLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYV 308 (569)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777776666655556677777777777766655544 333444444444444444444444333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHH
Q 001573 306 SKRRMDFLEKVDQVGVQVQGKYKEMQELRRQ----------EQSRQQRILKAREELAAAELDLQTVPAYEPPHDKIEKLG 375 (1051)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~l~ 375 (1051)
......+...+..+......+..++..+... ...+.+++..+...+..+...+..... ....+.
T Consensus 309 ek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~------~ysel~ 382 (569)
T PRK04778 309 EKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEI------AYSELQ 382 (569)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CHHHHH
Confidence 4444444455555555555555555555544 445555666666666655555544322 233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001573 376 SQILELGVQANQKRLQKSEKEKILNQNKLTLRQCSDRLKDMEDKNNKLL 424 (1051)
Q Consensus 376 ~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 424 (1051)
.++..+..++..+......+...+..+......++..+..+...+....
T Consensus 383 e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 383 EELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444433
No 121
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.13 E-value=9.3e-07 Score=80.10 Aligned_cols=40 Identities=30% Similarity=0.600 Sum_probs=30.1
Q ss_pred EEEEeccccccceEEecCCc-eeEEEcCCCCChHHHHHHHH
Q 001573 25 EIELHNFMTFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIA 64 (1051)
Q Consensus 25 ~l~l~nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~ 64 (1051)
++..-||+...+.++..+|| +.+|+||||+||||+||+|+
T Consensus 12 sVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~It 52 (249)
T COG4674 12 SVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVIT 52 (249)
T ss_pred EEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeec
Confidence 34445555555666655544 99999999999999999986
No 122
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.13 E-value=5.6e-06 Score=79.32 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=53.5
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
|||||+.++++|..++. +.|++++||++++||..+...+.+.|.+...+ ++.+|++||+.
T Consensus 96 LS~G~~qrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiii~th~~ 155 (173)
T cd03230 96 LSGGMKQRLALAQALLH----DPELLILDEPTSGLDPESRREFWELLRELKKE--GKTILLSSHIL 155 (173)
T ss_pred cCHHHHHHHHHHHHHHc----CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEECCCH
Confidence 89999999999998884 56899999999999999999999999887653 57899999984
No 123
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.13 E-value=5.6e-06 Score=79.83 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=53.1
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||++++|+|=.|+- .| ++++.||.+.+||..+...++++|.+... ..+.=+|++||..
T Consensus 140 p~eLSGGqqQRVAIARAL~~---~P-~iilADEPTgnLD~~t~~~V~~ll~~~~~-~~g~tii~VTHd~ 203 (226)
T COG1136 140 PSELSGGQQQRVAIARALIN---NP-KIILADEPTGNLDSKTAKEVLELLRELNK-ERGKTIIMVTHDP 203 (226)
T ss_pred chhcCHHHHHHHHHHHHHhc---CC-CeEEeeCccccCChHHHHHHHHHHHHHHH-hcCCEEEEEcCCH
Confidence 45699999999999987772 33 45688999999999999999999988865 2356799999993
No 124
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=6.9e-06 Score=77.28 Aligned_cols=83 Identities=19% Similarity=0.268 Sum_probs=62.0
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeEEEE
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSILN 1019 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~~v~~ 1019 (1051)
+|||||-+.=++=++.| .|. |+||||+|+|+|-...+.+.+-+-.+.. .++=+++|||.. .-+.|..--.||+
T Consensus 145 FSGGEkKR~EilQ~~~l---ePk-l~ILDE~DSGLDIdalk~V~~~i~~lr~--~~~~~liITHy~-rll~~i~pD~vhv 217 (251)
T COG0396 145 FSGGEKKRNEILQLLLL---EPK-LAILDEPDSGLDIDALKIVAEGINALRE--EGRGVLIITHYQ-RLLDYIKPDKVHV 217 (251)
T ss_pred cCcchHHHHHHHHHHhc---CCC-EEEecCCCcCccHHHHHHHHHHHHHHhc--CCCeEEEEecHH-HHHhhcCCCEEEE
Confidence 79999999998876665 333 8999999999999999998887766655 488999999982 0013432226777
Q ss_pred EecCCCCCCC
Q 001573 1020 IMNGPWIEQP 1029 (1051)
Q Consensus 1020 ~~~g~~~~~~ 1029 (1051)
.++|.-+...
T Consensus 218 l~~GrIv~sG 227 (251)
T COG0396 218 LYDGRIVKSG 227 (251)
T ss_pred EECCEEEecC
Confidence 7888765543
No 125
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.12 E-value=5.2e-06 Score=83.27 Aligned_cols=62 Identities=19% Similarity=0.289 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||+.+...+.+.|.+.... +.-+|++||+.
T Consensus 137 ~~LSgG~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~vsH~~ 198 (216)
T TIGR00960 137 MQLSGGEQQRVAIARAIVH----KPPLLLADEPTGNLDPELSRDIMRLFEEFNRR--GTTVLVATHDI 198 (216)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 3589999999999988874 56899999999999999999999988877542 56799999984
No 126
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.11 E-value=4.5e-06 Score=83.53 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=53.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+++.|.+.+. ..+.-+|++||..
T Consensus 129 ~~LSgG~~qrl~la~al~~----~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~ 191 (213)
T cd03259 129 HELSGGQQQRVALARALAR----EPSLLLLDEPLSALDAKLREELREELKELQR-ELGITTIYVTHDQ 191 (213)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEecCH
Confidence 3589999999999988773 5789999999999999999999998887754 1256799999984
No 127
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.11 E-value=5.6e-06 Score=82.96 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+.... +.-+|++||..
T Consensus 136 ~~LS~G~~qrl~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~tH~~ 197 (214)
T TIGR02673 136 EQLSGGEQQRVAIARAIVN----SPPLLLADEPTGNLDPDLSERILDLLKRLNKR--GTTVIVATHDL 197 (214)
T ss_pred hhCCHHHHHHHHHHHHHhC----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCH
Confidence 3589999999999998873 56899999999999999999999988876542 67799999984
No 128
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.10 E-value=6.1e-07 Score=107.01 Aligned_cols=9 Identities=22% Similarity=0.549 Sum_probs=0.0
Q ss_pred cccCCchHH
Q 001573 938 HHQSGGERS 946 (1051)
Q Consensus 938 ~~lSGGErs 946 (1051)
..++||-+.
T Consensus 736 ~~~~~~k~~ 744 (859)
T PF01576_consen 736 SALKGGKKQ 744 (859)
T ss_dssp ---------
T ss_pred hhhcccccH
Confidence 346677554
No 129
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.10 E-value=3.5e-06 Score=77.77 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=51.3
Q ss_pred ccccccCCchHHHHHHHHHHH-hcccCCCC-ceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 935 LSAHHQSGGERSVSTILYLVS-LQDLTNCP-FRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 935 ~~~~~lSGGErs~~~lallla-l~~~~~~P-f~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
.+...|||||+.++.+|=.|| +|...|.| ..+|||.++.||-..-..++....+++.. +.=+++|-|++
T Consensus 131 R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~--g~~V~~VLHDL 201 (259)
T COG4559 131 RDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE--GGAVLAVLHDL 201 (259)
T ss_pred cchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc--CCcEEEEEccc
Confidence 345567888888888887777 67777777 66788888888888877777777777764 56677777774
No 130
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.10 E-value=5.8e-06 Score=82.49 Aligned_cols=62 Identities=19% Similarity=0.248 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..|+. +.|+++|||++++||+.+...+.+.|.+.... +.-+|++||+.
T Consensus 127 ~~LS~G~~qrl~la~al~~----~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~--~~tii~~sH~~ 188 (210)
T cd03269 127 EELSKGNQQKVQFIAAVIH----DPELLILDEPFSGLDPVNVELLKDVIRELARA--GKTVILSTHQM 188 (210)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEECCCH
Confidence 3589999999999988874 56899999999999999999999988877642 57899999984
No 131
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=2.7e-06 Score=81.52 Aligned_cols=48 Identities=31% Similarity=0.442 Sum_probs=43.8
Q ss_pred eEEEEEEeccccccceEEecCCceeEEEcCCCCChHHHHHHHHHHhcCC
Q 001573 22 NIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGD 70 (1051)
Q Consensus 22 ~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~ 70 (1051)
.|.+++|.||+||.+..|.+.| +|+++|||-|||||.+.+|.+.+.|-
T Consensus 1 mi~sl~l~nfk~y~n~~i~l~~-ltVF~G~NssGKSt~iqsl~li~s~l 48 (374)
T COG4938 1 MILSLSLKNFKPYINGKIILKP-LTVFIGPNSSGKSTTIQSLYLIYSGL 48 (374)
T ss_pred CcceeeecCccceecceEEEec-ceEEEcCCCCchhHHHHHHHHHHHhh
Confidence 3779999999999999998887 99999999999999999999888763
No 132
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.09 E-value=0.018 Score=64.78 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 001573 623 LRSKKKKLEESVDELE 638 (1051)
Q Consensus 623 l~~~~~~l~~~~~~~~ 638 (1051)
|..++.++.+++..++
T Consensus 229 Lr~QvrdLtEkLetlR 244 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLR 244 (1243)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555443
No 133
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.08 E-value=6.8e-06 Score=83.18 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=52.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+++.|.+... ..-+|++||..
T Consensus 140 ~~LSgG~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~ 200 (227)
T cd03260 140 LGLSGGQQQRLCLARALAN----EPEVLLLDEPTSALDPISTAKIEELIAELKK---EYTIVIVTHNM 200 (227)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhh---CcEEEEEeccH
Confidence 4589999999999987774 5689999999999999999999999988765 36799999984
No 134
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.07 E-value=7.6e-06 Score=82.21 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++.+||+.++..+.+.|.+.... +..+|++||+.
T Consensus 141 ~~LSgG~~qrv~laral~~----~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~--~~tiii~sH~~ 202 (224)
T cd03220 141 KTYSSGMKARLAFAIATAL----EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ--GKTVILVSHDP 202 (224)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence 4589999999999987774 56899999999999999999999988877642 57899999984
No 135
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.07 E-value=6.7e-06 Score=82.69 Aligned_cols=63 Identities=17% Similarity=0.313 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||+.++..+++.|.+.... .+.-+|++||+.
T Consensus 130 ~~LSgG~~qrl~la~al~~----~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~ 192 (220)
T cd03293 130 HQLSGGMRQRVALARALAV----DPDVLLLDEPFSALDALTREQLQEELLDIWRE-TGKTVLLVTHDI 192 (220)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCH
Confidence 3589999999999988874 56899999999999999999999988876431 256789999984
No 136
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.07 E-value=7.1e-06 Score=83.25 Aligned_cols=63 Identities=21% Similarity=0.215 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||.+++||..++..+.+.|.+.... .+.-+|++||..
T Consensus 114 ~~LSgGe~qrv~iaraL~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsHd~ 176 (246)
T cd03237 114 PELSGGELQRVAIAACLSK----DADIYLLDEPSAYLDVEQRLMASKVIRRFAEN-NEKTAFVVEHDI 176 (246)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 4589999999999987773 57899999999999999999999888877542 256799999984
No 137
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.06 E-value=7.8e-06 Score=78.80 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=52.6
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
|||||+.++++|..++. +.|+++|||.+++||..+...+++.|.+.+. ..++-+|++||..
T Consensus 101 lS~G~~qr~~la~al~~----~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~ 161 (178)
T cd03229 101 LSGGQQQRVALARALAM----DPDVLLLDEPTSALDPITRREVRALLKSLQA-QLGITVVLVTHDL 161 (178)
T ss_pred CCHHHHHHHHHHHHHHC----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 99999999999988874 5689999999999999999999998887765 1247899999984
No 138
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.06 E-value=7.6e-06 Score=82.49 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..|+. +.|+++|||++++||+.+...+.+.|.+... ..+.-+|++||+.
T Consensus 140 ~~LS~G~~qrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~tH~~ 202 (221)
T TIGR02211 140 SELSGGERQRVAIARALVN----QPSLVLADEPTGNLDNNNAKIIFDLMLELNR-ELNTSFLVVTHDL 202 (221)
T ss_pred hhCCHHHHHHHHHHHHHhC----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4589999999999988874 5689999999999999999999998887754 1256789999984
No 139
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.06 E-value=9.2e-06 Score=77.86 Aligned_cols=60 Identities=22% Similarity=0.218 Sum_probs=52.5
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
|||||+.+++||..++. +.++++|||++++||+..+..+.+.|.+.... +.-+|++||+.
T Consensus 97 LS~G~~qrv~la~al~~----~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~sh~~ 156 (173)
T cd03246 97 LSGGQRQRLGLARALYG----NPRILVLDEPNSHLDVEGERALNQAIAALKAA--GATRIVIAHRP 156 (173)
T ss_pred cCHHHHHHHHHHHHHhc----CCCEEEEECCccccCHHHHHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence 89999999999987773 67899999999999999999999988877542 67899999985
No 140
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.06 E-value=1e-05 Score=76.48 Aligned_cols=60 Identities=22% Similarity=0.372 Sum_probs=51.8
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
|||||+.++++|..++. +.|+++|||++.+||..++..+.+.|.+...+ +.-+|++||+.
T Consensus 83 LS~G~~qrl~laral~~----~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~ 142 (163)
T cd03216 83 LSVGERQMVEIARALAR----NARLLILDEPTAALTPAEVERLFKVIRRLRAQ--GVAVIFISHRL 142 (163)
T ss_pred cCHHHHHHHHHHHHHhc----CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 99999999999987763 46899999999999999999999998877542 67788899884
No 141
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.06 E-value=9e-06 Score=80.70 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=52.8
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||+..+..+.+.|.+.... +.-+|++||..
T Consensus 125 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~sH~~ 186 (205)
T cd03226 125 LSLSGGQKQRLAIAAALLS----GKDLLIFDEPTSGLDYKNMERVGELIRELAAQ--GKAVIVITHDY 186 (205)
T ss_pred hhCCHHHHHHHHHHHHHHh----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 3589999999999987774 56899999999999999999999988877542 56789999884
No 142
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.05 E-value=1.3e-05 Score=79.43 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..++. +.++++|||.+.+||......+.+.|.+...+ +.-+|++||+.
T Consensus 126 ~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~ 187 (207)
T PRK13539 126 GYLSAGQKRRVALARLLVS----NRPIWILDEPTAALDAAAVALFAELIRAHLAQ--GGIVIAATHIP 187 (207)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 3589999999999887774 46899999999999999999999999877653 67899999984
No 143
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.05 E-value=3.9e-06 Score=82.79 Aligned_cols=32 Identities=38% Similarity=0.513 Sum_probs=24.6
Q ss_pred eEEecC-CceeEEEcCCCCChHHHHHHHHHHhc
Q 001573 37 LICKPG-SRLNLVIGPNGSGKSSLVCAIALALG 68 (1051)
Q Consensus 37 ~~i~f~-~~~~~I~G~NGsGKSti~~Ai~~~L~ 68 (1051)
.++.+. ..+++|+|||||||||++.+|.-.|-
T Consensus 21 ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 21 LSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 344433 45999999999999999999887774
No 144
>PRK14079 recF recombination protein F; Provisional
Probab=98.04 E-value=0.00041 Score=74.41 Aligned_cols=129 Identities=15% Similarity=0.271 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcceEEEEec-cC--Cc-c----------------cccc---e
Q 001573 864 LKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLDE-HE--SD-F----------------DKFG---I 920 (1051)
Q Consensus 864 ~~~l~~~i~~l~~~~~~~~~~~~~~i~~~F~~~f~~l~~~g~~~l~~-~~--~~-~----------------~~~g---l 920 (1051)
+..+...+..+-..+.......+..++..|..++..++++..+.+.- .. .+ + ...| -
T Consensus 170 l~~w~~~l~~~g~~i~~~R~~~~~~l~~~~~~~~~~l~~~~~l~l~y~~~~~~~~~~~~l~~~~~~d~~~g~T~~GpHRd 249 (349)
T PRK14079 170 LHVWDDELVKLGDEIMALRRRALTRLSELAREAYAELGSRKPLRLELSESTAPEGYLAALEARRAEELARGATVVGPHRD 249 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEecCcCHHHHHHHHHHhhHHHHHcCCCCCCCchh
Confidence 55566666666666677777777888888888888884333455541 11 00 0 0112 1
Q ss_pred EEEEEecCCCccccccccccCCchHHHHHHHHHHH----hcc-cCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCC
Q 001573 921 LIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVS----LQD-LTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNT 995 (1051)
Q Consensus 921 ~i~v~~~~~~~~~~~~~~~lSGGErs~~~lallla----l~~-~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~ 995 (1051)
+|.+..+ |.+.. ..+|+||+-.+++++.|| +.. ....|+++|||++++||..+...+++.|.. .
T Consensus 250 D~~~~~~-g~~~~----~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~------~ 318 (349)
T PRK14079 250 DLVLTLE-GRPAH----RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAAS------L 318 (349)
T ss_pred ceEEEEC-CEehH----HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhc------C
Confidence 2333332 32222 238999999999999998 332 356899999999999999999988876642 3
Q ss_pred CeEEEEcC
Q 001573 996 PQCFLLTP 1003 (1051)
Q Consensus 996 ~Q~i~iTp 1003 (1051)
.|+|+.|.
T Consensus 319 ~q~~it~t 326 (349)
T PRK14079 319 PQAIVAGT 326 (349)
T ss_pred CcEEEEcC
Confidence 48754443
No 145
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.04 E-value=9.3e-06 Score=80.01 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||......+.+.|.+.... +.-+|++||+.
T Consensus 126 ~~LS~G~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~sH~~ 187 (198)
T TIGR01189 126 AQLSAGQQRRLALARLWLS----RAPLWILDEPTTALDKAGVALLAGLLRAHLAR--GGIVLLTTHQD 187 (198)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEEccc
Confidence 4589999999999987773 56899999999999999999999888876542 66799999985
No 146
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.04 E-value=9.7e-06 Score=79.19 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=53.1
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 939 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 939 ~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
.|||||+.++++|-.++. +.|++++||++++||..+...+.+.|.+.+. .+.-+|++||..
T Consensus 108 ~LSgGe~qrv~la~al~~----~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiiivtH~~ 168 (192)
T cd03232 108 GLSVEQRKRLTIGVELAA----KPSILFLDEPTSGLDSQAAYNIVRFLKKLAD--SGQAILCTIHQP 168 (192)
T ss_pred cCCHHHhHHHHHHHHHhc----CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH--cCCEEEEEEcCC
Confidence 699999999999987774 5689999999999999999999998887764 267899999984
No 147
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.04 E-value=8.7e-06 Score=81.84 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=53.4
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||+.+...+.+.|.+.... +.-+|++||..
T Consensus 135 ~~LS~G~~qrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~tH~~ 196 (218)
T cd03266 135 GGFSTGMRQKVAIARALVH----DPPVLLLDEPTTGLDVMATRALREFIRQLRAL--GKCILFSTHIM 196 (218)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 4589999999999988873 56899999999999999999999999887542 67899999985
No 148
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.03 E-value=8.8e-06 Score=83.18 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=53.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||+.+...+.+.|.+.... .+.-+|++||+.
T Consensus 132 ~~LSgGqkqrl~laraL~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tviivsHd~ 194 (257)
T PRK11247 132 AALSGGQKQRVALARALIH----RPGLLLLDEPLGALDALTRIEMQDLIESLWQQ-HGFTVLLVTHDV 194 (257)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 4589999999999988874 56899999999999999999999988876531 256799999984
No 149
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.03 E-value=8.8e-06 Score=82.22 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||+.++..+.+.|.+.+.. .+.-+|++||..
T Consensus 113 ~~LSgG~~qrv~la~al~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~ 175 (230)
T TIGR01184 113 GQLSGGMKQRVAIARALSI----RPKVLLLDEPFGALDALTRGNLQEELMQIWEE-HRVTVLMVTHDV 175 (230)
T ss_pred hhCCHHHHHHHHHHHHHHc----CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 4589999999999988874 56899999999999999999999988877541 255789999984
No 150
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=9.9e-06 Score=80.90 Aligned_cols=61 Identities=23% Similarity=0.220 Sum_probs=52.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..|+. +.++++|||.+++||..+...+.+.|.+... +.-+|++||..
T Consensus 129 ~~LS~G~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~vsH~~ 189 (211)
T cd03264 129 GSLSGGMRRRVGIAQALVG----DPSILIVDEPTAGLDPEERIRFRNLLSELGE---DRIVILSTHIV 189 (211)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEcCCH
Confidence 4589999999999988773 5689999999999999999999999988764 46799999884
No 151
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.03 E-value=1.1e-05 Score=77.93 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=53.5
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||..|+. +.++++|||++.+||+.++..+.+.|.+... ..+.-+|++||+.
T Consensus 95 ~~~LS~G~~qrl~laral~~----~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~ 158 (180)
T cd03214 95 FNELSGGERQRVLLARALAQ----EPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDL 158 (180)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 45699999999999987774 5689999999999999999999988877654 1256889999984
No 152
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.02 E-value=1.1e-05 Score=80.94 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.++++|||.+++||+.+...+.+.|.+.... +.-+|++||..
T Consensus 134 ~~LS~G~~qrv~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tvi~~sh~~ 195 (213)
T cd03262 134 AQLSGGQQQRVAIARALAM----NPKVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMVVVTHEM 195 (213)
T ss_pred cccCHHHHHHHHHHHHHhc----CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCH
Confidence 4589999999999987774 46899999999999999999999999887642 56799999984
No 153
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=9.4e-06 Score=82.40 Aligned_cols=63 Identities=25% Similarity=0.276 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..++. +.|+++|||++++||+.++..+.+.|.+... ..+.-+|++||+.
T Consensus 144 ~~LSgG~~qrl~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tvii~sH~~ 206 (233)
T PRK11629 144 SELSGGERQRVAIARALVN----NPRLVLADEPTGNLDARNADSIFQLLGELNR-LQGTAFLVVTHDL 206 (233)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCH
Confidence 3589999999999988874 5689999999999999999999998887653 1267899999984
No 154
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.02 E-value=9e-06 Score=81.75 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=52.8
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+... ..+.-+|++||..
T Consensus 139 ~~LS~G~~qrv~la~al~~----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~ 201 (218)
T cd03255 139 SELSGGQQQRVAIARALAN----DPKIILADEPTGNLDSETGKEVMELLRELNK-EAGTTIVVVTHDP 201 (218)
T ss_pred hhcCHHHHHHHHHHHHHcc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCeEEEEECCH
Confidence 3589999999999987763 5689999999999999999999998888754 1256789999984
No 155
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.02 E-value=1.3e-05 Score=80.09 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=53.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..++. +.|+++|||.+.+||..+...+.+.|.+.... +.-+|++||+.
T Consensus 136 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~ 197 (214)
T PRK13543 136 RQLSAGQKKRLALARLWLS----PAPLWLLDEPYANLDLEGITLVNRMISAHLRG--GGAALVTTHGA 197 (214)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEecCh
Confidence 4589999999999988874 56899999999999999999999888877653 57799999985
No 156
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.02 E-value=1e-05 Score=81.42 Aligned_cols=77 Identities=19% Similarity=0.284 Sum_probs=59.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeEE
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSI 1017 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~~v 1017 (1051)
..|||||+.+++||..++. +.|+++|||++++||+.+...+.+.|.+.+. ..-+|++||..- -+.+.+ ++
T Consensus 139 ~~LSgG~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~~-~~~~~d--~v 208 (220)
T cd03245 139 RGLSGGQRQAVALARALLN----DPPILLLDEPTSAMDMNSEERLKERLRQLLG---DKTLIIITHRPS-LLDLVD--RI 208 (220)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHhcC---CCEEEEEeCCHH-HHHhCC--EE
Confidence 4589999999999988874 5689999999999999999999998887754 367999999852 223333 34
Q ss_pred EEEecCC
Q 001573 1018 LNIMNGP 1024 (1051)
Q Consensus 1018 ~~~~~g~ 1024 (1051)
+.+.+|.
T Consensus 209 ~~l~~g~ 215 (220)
T cd03245 209 IVMDSGR 215 (220)
T ss_pred EEEeCCe
Confidence 4444553
No 157
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.01 E-value=1.1e-05 Score=81.40 Aligned_cols=61 Identities=18% Similarity=0.301 Sum_probs=52.7
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||+.+...+.+.|.+.+. +.-+|++||+.
T Consensus 132 ~~LS~G~~qrv~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~ 192 (220)
T cd03263 132 RTLSGGMKRKLSLAIALIG----GPSVLLLDEPTSGLDPASRRAIWDLILEVRK---GRSIILTTHSM 192 (220)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEECCCCCCCCHHHHHHHHHHHHHHhc---CCEEEEEcCCH
Confidence 3589999999999988773 6789999999999999999999998888764 46788999884
No 158
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.01 E-value=1.2e-05 Score=77.94 Aligned_cols=60 Identities=17% Similarity=0.304 Sum_probs=52.1
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
|||||+.+++||..++. +.|+++|||.+++||+.++..+.+.|.+.... +..+|++||..
T Consensus 105 LS~G~~qrl~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~ 164 (182)
T cd03215 105 LSGGNQQKVVLARWLAR----DPRVLILDEPTRGVDVGAKAEIYRLIRELADA--GKAVLLISSEL 164 (182)
T ss_pred cCHHHHHHHHHHHHHcc----CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 99999999999987764 56899999999999999999999988877542 67899999984
No 159
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.01 E-value=1.1e-05 Score=79.82 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=52.8
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+- +.++++|||.+.+||..+...+.+.|.+.... +.-+|++||+.
T Consensus 128 ~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~ 189 (204)
T PRK13538 128 RQLSAGQQRRVALARLWLT----RAPLWILDEPFTAIDKQGVARLEALLAQHAEQ--GGMVILTTHQD 189 (204)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC--CCEEEEEecCh
Confidence 4589999999999887773 56899999999999999999999988877542 56799999984
No 160
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.01 E-value=1.2e-05 Score=79.30 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=53.4
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.|+++|||.+.+||..+...+.+.|.+... .+..+|++||..
T Consensus 126 ~~LS~G~~~rv~laral~~----~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~sh~~ 187 (200)
T PRK13540 126 GLLSSGQKRQVALLRLWMS----KAKLWLLDEPLVALDELSLLTIITKIQEHRA--KGGAVLLTSHQD 187 (200)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEEeCCCcccCHHHHHHHHHHHHHHHH--cCCEEEEEeCCc
Confidence 3489999999999988874 4689999999999999999999999988654 267899999984
No 161
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.00 E-value=1.2e-05 Score=80.73 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||+.+...+.+.|.+.... +.-+|++||+.
T Consensus 135 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tiiivtH~~ 196 (214)
T cd03292 135 AELSGGEQQRVAIARAIVN----SPTILIADEPTGNLDPDTTWEIMNLLKKINKA--GTTVVVATHAK 196 (214)
T ss_pred hhcCHHHHHHHHHHHHHHc----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCH
Confidence 3589999999999988873 56899999999999999999999999887542 56799999984
No 162
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.00 E-value=1.2e-05 Score=83.05 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=53.7
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||.+++||+.+...+++.|.+... .+..+|++||..
T Consensus 151 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~g~tiiivsH~~ 212 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAM----EPEVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEM 212 (257)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCH
Confidence 4589999999999987774 4689999999999999999999999888764 278899999984
No 163
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.00 E-value=1.2e-05 Score=80.43 Aligned_cols=63 Identities=21% Similarity=0.327 Sum_probs=53.7
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||..+...+++.|.+... ..++.+|++||+.
T Consensus 127 ~~LS~G~~qrl~laral~~----~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tii~vsh~~ 189 (213)
T TIGR01277 127 EQLSGGQRQRVALARCLVR----PNPILLLDEPFSALDPLLREEMLALVKQLCS-ERQRTLLMVTHHL 189 (213)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 3589999999999998874 5689999999999999999999998887753 2267899999994
No 164
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=1e-05 Score=82.35 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+++.|.+.+.. .+.=+|++||..
T Consensus 135 ~~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsH~~ 197 (235)
T cd03261 135 AELSGGMKKRVALARALAL----DPELLLYDEPTAGLDPIASGVIDDLIRSLKKE-LGLTSIMVTHDL 197 (235)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEecCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCH
Confidence 3589999999999988773 57899999999999999999999998887541 256789999984
No 165
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.00 E-value=1.2e-05 Score=82.63 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||+.+...+.+.|.+... +..+|++||+.
T Consensus 145 ~~LS~G~~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivtH~~ 205 (250)
T PRK14245 145 FALSGGQQQRLCIARAMAV----SPSVLLMDEPASALDPISTAKVEELIHELKK---DYTIVIVTHNM 205 (250)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCH
Confidence 4589999999999988763 5689999999999999999999999988743 57899999984
No 166
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.99 E-value=0.066 Score=62.18 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhch
Q 001573 252 EYIAAKEQEKDAKKKLDEAANTLHE 276 (1051)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (1051)
....++.++......+...+..+..
T Consensus 1233 ~~~~lr~~l~~~~e~L~~~E~~Lsd 1257 (1758)
T KOG0994|consen 1233 ATESLRRQLQALTEDLPQEEETLSD 1257 (1758)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 3334444444444444444433333
No 167
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.99 E-value=1.2e-05 Score=81.23 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..|+ .+.|+++|||++++||+.++..+++.|.+... .+.-+|++||..
T Consensus 131 ~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~ 192 (222)
T cd03224 131 GTLSGGEQQMLAIARALM----SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD--EGVTILLVEQNA 192 (222)
T ss_pred hhCCHHHHHHHHHHHHHh----cCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 348999999999998776 35689999999999999999999999988764 267899999984
No 168
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.99 E-value=1.2e-05 Score=82.48 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=53.4
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.|+++|||++++||+.++..+.+.|.+.+. ..+.-+|++||+.
T Consensus 143 ~~LS~G~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~tH~~ 205 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQ----QPKLILADEPVASLDPASSRQVMDLLKRINR-EEGITVIVSLHQV 205 (241)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4589999999999988873 5689999999999999999999999988753 1256799999984
No 169
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.99 E-value=1.4e-05 Score=78.10 Aligned_cols=61 Identities=23% Similarity=0.232 Sum_probs=53.1
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 939 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 939 ~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
.|||||+.+++||..|+. +.|+++|||++.+||..+...+.+.|.+.... +.-+|++||..
T Consensus 111 ~LS~G~~qrv~laral~~----~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~ 171 (194)
T cd03213 111 GLSGGERKRVSIALELVS----NPSLLFLDEPTSGLDSSSALQVMSLLRRLADT--GRTIICSIHQP 171 (194)
T ss_pred cCCHHHHHHHHHHHHHHc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCc
Confidence 699999999999988774 56899999999999999999999988877542 67899999984
No 170
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.99 E-value=1.4e-05 Score=79.68 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..|+. +.++++|||++++||+.+...+.+.|.+... .+.-+|++||+.
T Consensus 133 ~~lS~G~~qr~~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~ 194 (206)
T TIGR03608 133 YELSGGEQQRVALARAILK----DPPLILADEPTGSLDPKNRDEVLDLLLELND--EGKTIIIVTHDP 194 (206)
T ss_pred hhCCHHHHHHHHHHHHHHc----CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCH
Confidence 3589999999999987773 5689999999999999999999998887764 267889999984
No 171
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.98 E-value=1.1e-05 Score=76.91 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=54.2
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
++.|||||++++|+|=.+++ .-.+.|+||..++||..+-..+.++|.++-. ..+.=||||||..
T Consensus 139 P~eLSGGQ~QRiaIARAL~~----~PklLIlDEptSaLD~siQa~IlnlL~~l~~-~~~lt~l~IsHdl 202 (252)
T COG1124 139 PHELSGGQRQRIAIARALIP----EPKLLILDEPTSALDVSVQAQILNLLLELKK-ERGLTYLFISHDL 202 (252)
T ss_pred chhcChhHHHHHHHHHHhcc----CCCEEEecCchhhhcHHHHHHHHHHHHHHHH-hcCceEEEEeCcH
Confidence 56799999999999987774 2348899999999999999999999988765 3466799999994
No 172
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.98 E-value=1.7e-05 Score=75.07 Aligned_cols=83 Identities=14% Similarity=0.126 Sum_probs=61.8
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeE
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACS 1016 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~~ 1016 (1051)
+..||||++.++++|..++. -.|.++++|||++.+||+.++..+.+.|.+... .+.-+|++||..- .+.+.+ .
T Consensus 85 ~~~LSgGq~qrl~laral~~--~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~--~g~tvIivSH~~~-~~~~~d--~ 157 (176)
T cd03238 85 LSTLSGGELQRVKLASELFS--EPPGTLFILDEPSTGLHQQDINQLLEVIKGLID--LGNTVILIEHNLD-VLSSAD--W 157 (176)
T ss_pred cCcCCHHHHHHHHHHHHHhh--CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHH-HHHhCC--E
Confidence 45699999999999886663 223789999999999999999999998887653 3678999999952 233333 4
Q ss_pred EEEEecCCCC
Q 001573 1017 ILNIMNGPWI 1026 (1051)
Q Consensus 1017 v~~~~~g~~~ 1026 (1051)
++++-+||..
T Consensus 158 i~~l~~g~~~ 167 (176)
T cd03238 158 IIDFGPGSGK 167 (176)
T ss_pred EEEECCCCCC
Confidence 4444566653
No 173
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.98 E-value=1.2e-05 Score=81.92 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||..++..+.+.|.+... .+.-+|++||+.
T Consensus 142 ~~LSgG~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~vsH~~ 203 (236)
T cd03219 142 GELSYGQQRRLEIARALAT----DPKLLLLDEPAAGLNPEETEELAELIRELRE--RGITVLLVEHDM 203 (236)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCH
Confidence 4589999999999988773 5689999999999999999999998887764 266799999984
No 174
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.98 E-value=1.3e-05 Score=81.23 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=53.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++.+||+.+...+.+.|.+.+. ..+.-+|++||+.
T Consensus 145 ~~LS~Ge~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~ 207 (228)
T PRK10584 145 AQLSGGEQQRVALARAFNG----RPDVLFADEPTGNLDRQTGDKIADLLFSLNR-EHGTTLILVTHDL 207 (228)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCH
Confidence 3589999999999987774 5689999999999999999999998888754 1256899999994
No 175
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.98 E-value=1.5e-05 Score=82.16 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||..++..+.+.|.+.... +.-+|++||..
T Consensus 143 ~~LS~Gq~qrv~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tvi~~tH~~ 204 (250)
T PRK11264 143 RRLSGGQQQRVAIARALAM----RPEVILFDEPTSALDPELVGEVLNTIRQLAQE--KRTMVIVTHEM 204 (250)
T ss_pred hhCChHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCH
Confidence 4589999999999988873 46899999999999999999999988877642 56799999984
No 176
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.97 E-value=1.1e-05 Score=81.00 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=56.0
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
.+.||||.|+++++|+.+|+ . -.+.|.||.+.+||..+-..++++|.++.. ..++=+|||||.+
T Consensus 151 PhelSGGMrQRV~IAmala~---~-P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl 214 (316)
T COG0444 151 PHELSGGMRQRVMIAMALAL---N-PKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDL 214 (316)
T ss_pred CcccCCcHHHHHHHHHHHhC---C-CCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 56799999999999998885 2 347899999999999999999999988876 4688999999995
No 177
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.97 E-value=1.2e-05 Score=81.83 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.|+++|||.+++||..+...+.+.|.+.... +.-+|++||+.
T Consensus 136 ~~LS~G~~qrl~la~al~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~ 197 (237)
T PRK11614 136 GTMSGGEQQMLAIGRALMS----QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ--GMTIFLVEQNA 197 (237)
T ss_pred hhCCHHHHHHHHHHHHHHh----CCCEEEEcCccccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCcH
Confidence 3489999999999988874 56899999999999999999999988887642 66789999984
No 178
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.97 E-value=1.4e-05 Score=80.40 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=52.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.+++++||++++||+.+...+.+.|.+...+ .+.-+|++||..
T Consensus 130 ~~LS~G~~qr~~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~tH~~ 192 (220)
T cd03265 130 KTYSGGMRRRLEIARSLVH----RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYM 192 (220)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 3589999999999987773 56899999999999999999999988887642 256789999984
No 179
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.97 E-value=1.8e-05 Score=75.02 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=51.7
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
|||||+.++++|..++. +.++++|||.+++||..+...+.+.|.+.... .+.-+|++||..
T Consensus 72 LSgGq~qrv~laral~~----~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~ 132 (177)
T cd03222 72 LSGGELQRVAIAAALLR----NATFYLFDEPSAYLDIEQRLNAARAIRRLSEE-GKKTALVVEHDL 132 (177)
T ss_pred CCHHHHHHHHHHHHHhc----CCCEEEEECCcccCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCH
Confidence 89999999999988874 45899999999999999999999988877542 226789999984
No 180
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.97 E-value=1.4e-05 Score=82.47 Aligned_cols=61 Identities=16% Similarity=0.264 Sum_probs=53.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++.+||..+...+.+.|.+... +..+|++||+.
T Consensus 153 ~~LSgG~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~l~~---~~tiiivsH~~ 213 (258)
T PRK14268 153 LSLSGGQQQRLCIARTLAV----KPKIILFDEPTSALDPISTARIEDLIMNLKK---DYTIVIVTHNM 213 (258)
T ss_pred hhCCHHHHHHHHHHHHHHc----CCCEEEEeCCCcccCHHHHHHHHHHHHHHhh---CCEEEEEECCH
Confidence 4589999999999988874 4589999999999999999999998887753 58899999984
No 181
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.97 E-value=0.028 Score=60.05 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcceEEEEeccCCcccccceEE
Q 001573 843 YEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLDEHESDFDKFGILI 922 (1051)
Q Consensus 843 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~F~~~f~~l~~~g~~~l~~~~~~~~~~gl~i 922 (1051)
|.-++...+.|.........+++.|.+.+..+..-+ --..-+-..|+..+..-.+.++..|. ... .+.+..|
T Consensus 447 Y~g~ekk~n~LE~e~kn~~~ev~kls~ei~~ie~~l-----~~~~~~vke~nq~l~~g~gra~~~L~-~~~--kek~y~i 518 (758)
T COG4694 447 YCGLEKKINNLEKEIKNNQEEVKKLSNEIKEIEKFL-----VSIKPIVKEINQTLLKGYGRANFSLA-CTE--KEKFYRI 518 (758)
T ss_pred HHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHH-----hhchhhHHHHHHHHHhhcchheeeee-ecc--chhhhee
Confidence 344445555555555555555555555555443332 11122334555555544444555554 111 1223333
Q ss_pred EEEecCCCccccccccccCCchHHHHHHHHHHHhcccCCC----CceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeE
Q 001573 923 KVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNC----PFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQC 998 (1051)
Q Consensus 923 ~v~~~~~~~~~~~~~~~lSGGErs~~~lalllal~~~~~~----Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~ 998 (1051)
+...| ++....||-||+..+|++|-+|=...+|- -.+|+|+.=.-+|....-+++..+..... ..-|+
T Consensus 519 --~r~~g----~~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t--~~kQv 590 (758)
T COG4694 519 --QREDG----QLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKT--NIKQV 590 (758)
T ss_pred --ecccC----ccccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHh--CceEE
Confidence 22233 34455699999999999999884433332 35899999999999999888877766554 47899
Q ss_pred EEEcCC
Q 001573 999 FLLTPK 1004 (1051)
Q Consensus 999 i~iTp~ 1004 (1051)
||+||.
T Consensus 591 iVLtHn 596 (758)
T COG4694 591 IVLTHN 596 (758)
T ss_pred EEEecc
Confidence 999999
No 182
>PRK10908 cell division protein FtsE; Provisional
Probab=97.97 E-value=1.5e-05 Score=80.21 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||.+.+||+.+...+.+.|.+.... +.-+|++||..
T Consensus 136 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~ 197 (222)
T PRK10908 136 IQLSGGEQQRVGIARAVVN----KPAVLLADEPTGNLDDALSEGILRLFEEFNRV--GVTVLMATHDI 197 (222)
T ss_pred hhCCHHHHHHHHHHHHHHc----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 4589999999999988773 45899999999999999999999988887542 67899999984
No 183
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.97 E-value=1.3e-05 Score=80.08 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=52.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||..+...+.+.|.+.+.. .+.-+|++||+.
T Consensus 130 ~~LS~G~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~ 192 (214)
T cd03297 130 AQLSGGEKQRVALARALAA----QPELLLLDEPFSALDRALRLQLLPELKQIKKN-LNIPVIFVTHDL 192 (214)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEecCH
Confidence 3489999999999988873 56899999999999999999999988887641 245699999984
No 184
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.97 E-value=1.5e-05 Score=80.11 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=53.7
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..++. +.|+++|||.+.+||..+...+.+.|.+... .+.-+|++||+.
T Consensus 112 ~~LS~G~~qrv~laral~~----~p~llilDEP~~~LD~~~~~~l~~~l~~~~~--~~~tvii~sH~~ 173 (223)
T TIGR03771 112 GELSGGQRQRVLVARALAT----RPSVLLLDEPFTGLDMPTQELLTELFIELAG--AGTAILMTTHDL 173 (223)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCH
Confidence 3489999999999987774 5689999999999999999999999887764 277899999984
No 185
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.97 E-value=1.5e-05 Score=81.70 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. +.|+++|||++++||..++..+.+.|.+... +.-+|++||+.
T Consensus 141 ~~LS~G~~qrv~laral~~----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~ 201 (246)
T PRK14269 141 LALSGGQQQRLCIARALAI----KPKLLLLDEPTSALDPISSGVIEELLKELSH---NLSMIMVTHNM 201 (246)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEecCH
Confidence 3589999999999987773 5689999999999999999999998888753 67899999984
No 186
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.97 E-value=1.4e-05 Score=81.23 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=53.7
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..|+. +.|+++|||++++||+.+...+.+.|.+.+.. .+.-+|++||..
T Consensus 131 ~~LS~G~~qrl~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~ 193 (236)
T TIGR03864 131 RELNGGHRRRVEIARALLH----RPALLLLDEPTVGLDPASRAAIVAHVRALCRD-QGLSVLWATHLV 193 (236)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCh
Confidence 3589999999999998884 56899999999999999999999999887631 256799999884
No 187
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.96 E-value=1.4e-05 Score=81.19 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=52.8
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..|+. +.|+++|||++++||..++..+.+.|.+.... +.-+|++||..
T Consensus 132 ~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tii~~sH~~ 193 (232)
T cd03218 132 SSLSGGERRRVEIARALAT----NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR--GIGVLITDHNV 193 (232)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 4589999999999988874 56899999999999999999999988877642 56688999984
No 188
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.96 E-value=1.5e-05 Score=82.13 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..|+. +.++++|||.+++||+.++..+.+.|.+... +.-+|++||..
T Consensus 145 ~~LSgG~~qrv~laral~~----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~ 205 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAF----QPEVLLADEPTANLDPENTAKIESLFLELKK---DMTIVLVTHFP 205 (250)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 4589999999999988873 5689999999999999999999999988753 57899999984
No 189
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.96 E-value=1.5e-05 Score=80.52 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=52.6
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++ .+.++++|||++++||+.+...+.+.|.+... +.-+|++||+.
T Consensus 149 ~~LSgG~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~ 209 (226)
T cd03248 149 SQLSGGQKQRVAIARALI----RNPQVLILDEATSALDAESEQQVQQALYDWPE---RRTVLVIAHRL 209 (226)
T ss_pred CcCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC---CCEEEEEECCH
Confidence 458999999999998776 35689999999999999999999998887654 57899999984
No 190
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.96 E-value=1.4e-05 Score=82.07 Aligned_cols=63 Identities=22% Similarity=0.300 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||+.+...+.+.|.+.... .+.-+|++||+.
T Consensus 127 ~~LSgGq~qrl~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tviivsH~~ 189 (255)
T PRK11248 127 WQLSGGQRQRVGIARALAA----NPQLLLLDEPFGALDAFTREQMQTLLLKLWQE-TGKQVLLITHDI 189 (255)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 4589999999999988873 56899999999999999999999988876431 256799999984
No 191
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.96 E-value=1.6e-05 Score=81.83 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=53.5
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+... ...+|++||+.
T Consensus 145 ~~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~L~~~~~---~~tiiivsH~~ 206 (251)
T PRK14270 145 ALKLSGGQQQRLCIARTIAV----KPDVILMDEPTSALDPISTLKIEDLMVELKK---EYTIVIVTHNM 206 (251)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCeEEEEEcCH
Confidence 34589999999999988873 5689999999999999999999998888764 47899999984
No 192
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.96 E-value=1.5e-05 Score=79.55 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..|+ .+.++++|||++++||+.++..+.+.|.+... ..+.-+|++||+.
T Consensus 127 ~~LS~G~~qrv~ia~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~ 189 (211)
T cd03298 127 GELSGGERQRVALARVLV----RDKPVLLLDEPFAALDPALRAEMLDLVLDLHA-ETKMTVLMVTHQP 189 (211)
T ss_pred ccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCH
Confidence 358999999999999887 35689999999999999999999998887754 1256789999984
No 193
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.96 E-value=1.5e-05 Score=78.48 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=59.6
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCC-CCCCe
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLE-YSEAC 1015 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~-~~~~~ 1015 (1051)
+..|||||+.+++||..|+. +.|+++|||.+++||...+..+.+.|.+... ..+.-+|++|||....+. +.+
T Consensus 116 ~~~LS~Ge~qrl~laral~~----~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~~t~ii~~~h~~~~~~~~~d-- 188 (202)
T cd03233 116 VRGISGGERKRVSIAEALVS----RASVLCWDNSTRGLDSSTALEILKCIRTMAD-VLKTTTFVSLYQASDEIYDLFD-- 188 (202)
T ss_pred hhhCCHHHHHHHHHHHHHhh----CCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hCCCEEEEEEcCCHHHHHHhCC--
Confidence 45699999999999988874 4689999999999999999999998887754 124567888887543332 223
Q ss_pred EEEEEecCC
Q 001573 1016 SILNIMNGP 1024 (1051)
Q Consensus 1016 ~v~~~~~g~ 1024 (1051)
.++++.+|.
T Consensus 189 ~i~~l~~G~ 197 (202)
T cd03233 189 KVLVLYEGR 197 (202)
T ss_pred eEEEEECCE
Confidence 444444553
No 194
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.96 E-value=1.8e-05 Score=77.94 Aligned_cols=62 Identities=23% Similarity=0.305 Sum_probs=53.7
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.|+++|||.+.+||..+...+.+.|.+.+.. +.-+|++||+.
T Consensus 103 ~~LS~G~~qrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~--~~tiii~sh~~ 164 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLL----EPDLAILDEPDSGLDIDALRLVAEVINKLREE--GKSVLIITHYQ 164 (200)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC--CCEEEEEecCH
Confidence 4699999999999988773 56899999999999999999999999887642 67899999984
No 195
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.96 E-value=1.5e-05 Score=82.13 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=52.5
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||+.+...+.+.|.+... +.-+|++||+.
T Consensus 148 ~~LSgGq~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tvii~tH~~ 208 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAV----EPEVLLMDEPASALDPIATQKIEELIHELKA---RYTIIIVTHNM 208 (253)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCeEEEEEecH
Confidence 4589999999999987764 5689999999999999999999998887743 57899999984
No 196
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.96 E-value=1.5e-05 Score=80.38 Aligned_cols=62 Identities=19% Similarity=0.189 Sum_probs=53.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..++. +.|+++|||++.+||+.+...+.+.|.+.... +..+|++||+.
T Consensus 123 ~~LS~G~~~rv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~--~~tiii~sH~~ 184 (223)
T TIGR03740 123 KQFSLGMKQRLGIAIALLN----HPKLLILDEPTNGLDPIGIQELRELIRSFPEQ--GITVILSSHIL 184 (223)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEECCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEcCCH
Confidence 4589999999999987774 56899999999999999999999999887542 67899999984
No 197
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.95 E-value=1.6e-05 Score=81.61 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=53.2
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||..|+. +.++++|||.+++||+.+...+++.|.+... ..-+|++||..
T Consensus 142 ~~~LSgG~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivsH~~ 203 (247)
T TIGR00972 142 ALGLSGGQQQRLCIARALAV----EPEVLLLDEPTSALDPIATGKIEELIQELKK---KYTIVIVTHNM 203 (247)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCeEEEEecCH
Confidence 34589999999999988873 5689999999999999999999998887765 46799999984
No 198
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.95 E-value=1.6e-05 Score=83.86 Aligned_cols=62 Identities=21% Similarity=0.233 Sum_probs=52.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||||.+++||..|+. +.++++|||+++|||+.++..+.+.|.+.... +.-+|++||..
T Consensus 123 ~~LSgG~~qrv~la~al~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~--g~tvi~~sH~~ 184 (302)
T TIGR01188 123 GTYSGGMRRRLDIAASLIH----QPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE--GVTILLTTHYM 184 (302)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEECCCH
Confidence 4589999999999987763 56899999999999999999999988887642 67799999984
No 199
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.95 E-value=1.6e-05 Score=81.23 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||..++..+.+.|.+.... +.-+|++||+.
T Consensus 135 ~~LS~G~~qrv~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~ 196 (240)
T PRK09493 135 SELSGGQQQRVAIARALAV----KPKLMLFDEPTSALDPELRHEVLKVMQDLAEE--GMTMVIVTHEI 196 (240)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCH
Confidence 3589999999999988873 56899999999999999999999988877542 67799999984
No 200
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.95 E-value=1.7e-05 Score=80.53 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.|+++|||++++||...+..+.+.|.+... ..+.-+|++||+.
T Consensus 128 ~~LS~G~~qrv~laral~~----~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~-~~~~tiii~sH~~ 190 (232)
T PRK10771 128 GQLSGGQRQRVALARCLVR----EQPILLLDEPFSALDPALRQEMLTLVSQVCQ-ERQLTLLMVSHSL 190 (232)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCH
Confidence 3589999999999987774 5689999999999999999999998887654 1256899999984
No 201
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.95 E-value=1.8e-05 Score=75.71 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=51.0
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
|||||+.+++||..++. +.++++|||.+++||...+..+.+.|.+... +.-+|++||..
T Consensus 97 LS~G~~~rl~la~al~~----~p~llllDEP~~gLD~~~~~~l~~~l~~~~~---~~tii~~sh~~ 155 (171)
T cd03228 97 LSGGQRQRIAIARALLR----DPPILILDEATSALDPETEALILEALRALAK---GKTVIVIAHRL 155 (171)
T ss_pred hCHHHHHHHHHHHHHhc----CCCEEEEECCCcCCCHHHHHHHHHHHHHhcC---CCEEEEEecCH
Confidence 99999999999987763 5579999999999999999999988887643 57888899884
No 202
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.95 E-value=1.7e-05 Score=82.00 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=53.2
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||..|+. +.|+++|||.+++||+.+...+.+.|.+.+. ...+|++||+.
T Consensus 146 ~~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tviivsH~~ 207 (258)
T PRK14241 146 GGGLSGGQQQRLCIARAIAV----EPDVLLMDEPCSALDPISTLAIEDLINELKQ---DYTIVIVTHNM 207 (258)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEecCH
Confidence 34589999999999987773 5689999999999999999999998887753 47899999984
No 203
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.95 E-value=2.8e-05 Score=73.75 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=51.2
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
...|||||+.++++|-.++ .+.|+++|||.+++||+.+...+.+.|.+. ..-+|++||..
T Consensus 89 ~~~LS~G~~~rv~laral~----~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~ 148 (166)
T cd03223 89 DDVLSGGEQQRLAFARLLL----HKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRP 148 (166)
T ss_pred CCCCCHHHHHHHHHHHHHH----cCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCCh
Confidence 4669999999999998776 356899999999999999999988888754 35699999994
No 204
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.95 E-value=1.5e-05 Score=82.89 Aligned_cols=81 Identities=21% Similarity=0.334 Sum_probs=57.7
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeE
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACS 1016 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~~ 1016 (1051)
+..+|||+|.+++||..|+ ..| +++||||+++|||+..+..+.+.|.+++.. +.--|+||.|.+..+...-+ .
T Consensus 134 ~~~lS~G~kqrl~ia~aL~---~~P-~lliLDEPt~GLDp~~~~~~~~~l~~l~~~--g~~tvlissH~l~e~~~~~d-~ 206 (293)
T COG1131 134 VRTLSGGMKQRLSIALALL---HDP-ELLILDEPTSGLDPESRREIWELLRELAKE--GGVTILLSTHILEEAEELCD-R 206 (293)
T ss_pred hhhcCHHHHHHHHHHHHHh---cCC-CEEEECCCCcCCCHHHHHHHHHHHHHHHhC--CCcEEEEeCCcHHHHHHhCC-E
Confidence 4558999999999998776 344 899999999999999999999999988862 21355555554444432212 4
Q ss_pred EEEEecCC
Q 001573 1017 ILNIMNGP 1024 (1051)
Q Consensus 1017 v~~~~~g~ 1024 (1051)
|..+.+|-
T Consensus 207 v~il~~G~ 214 (293)
T COG1131 207 VIILNDGK 214 (293)
T ss_pred EEEEeCCE
Confidence 44445554
No 205
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.94 E-value=1.4e-05 Score=82.01 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=52.8
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+.... .+.-+|++||..
T Consensus 144 ~~LSgG~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~tH~~ 206 (243)
T TIGR02315 144 DQLSGGQQQRVAIARALAQ----QPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQV 206 (243)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 4589999999999988773 56899999999999999999999988876531 256789999984
No 206
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.94 E-value=0.084 Score=61.67 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001573 842 EYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEK 877 (1051)
Q Consensus 842 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~ 877 (1051)
+......+++.|...+..+..........|..+...
T Consensus 563 e~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~Leke 598 (775)
T PF10174_consen 563 ESEKAQAEVERLLDILREAENEKNDKEKKIGELEKE 598 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 334445555556666666666666666666655554
No 207
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.94 E-value=1.5e-05 Score=81.01 Aligned_cols=63 Identities=19% Similarity=0.257 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+ .+.|+++|||++++||+.++..+.+.|.+... ..++-+|++||+.
T Consensus 139 ~~LS~G~~qrv~la~al~----~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tvii~sH~~ 201 (233)
T cd03258 139 AQLSGGQKQRVGIARALA----NNPKVLLCDEATSALDPETTQSILALLRDINR-ELGLTIVLITHEM 201 (233)
T ss_pred hhCCHHHHHHHHHHHHHh----cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCH
Confidence 458999999999998776 35689999999999999999999998887754 1256799999984
No 208
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.94 E-value=1.9e-05 Score=70.52 Aligned_cols=76 Identities=16% Similarity=0.304 Sum_probs=61.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCe--
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEAC-- 1015 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~-- 1015 (1051)
..||||++.++++|-.||+. |. ..+|||.+.+|||.-+..+++.|-++|.. ++=.+++||.+ .|..++
T Consensus 151 ~~LSGGQQQR~aIARaLame---P~-vmLFDEPTSALDPElVgEVLkv~~~LAeE--grTMv~VTHEM----~FAR~Vss 220 (256)
T COG4598 151 AHLSGGQQQRVAIARALAME---PE-VMLFDEPTSALDPELVGEVLKVMQDLAEE--GRTMVVVTHEM----GFARDVSS 220 (256)
T ss_pred cccCchHHHHHHHHHHHhcC---Cc-eEeecCCcccCCHHHHHHHHHHHHHHHHh--CCeEEEEeeeh----hHHHhhhh
Confidence 45899999999999999974 33 46899999999999999999999999975 78899999997 455554
Q ss_pred EEEEEecC
Q 001573 1016 SILNIMNG 1023 (1051)
Q Consensus 1016 ~v~~~~~g 1023 (1051)
.|++.++|
T Consensus 221 ~v~fLh~G 228 (256)
T COG4598 221 HVIFLHQG 228 (256)
T ss_pred heEEeecc
Confidence 45555666
No 209
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.94 E-value=1.5e-05 Score=81.31 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+.... .+.-+|++||+.
T Consensus 135 ~~LS~G~~qrl~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~ 197 (239)
T cd03296 135 AQLSGGQRQRVALARALAV----EPKVLLLDEPFGALDAKVRKELRRWLRRLHDE-LHVTTVFVTHDQ 197 (239)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 4589999999999988874 56899999999999999999999988877541 245699999984
No 210
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.94 E-value=1.7e-05 Score=81.25 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=52.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+... .+.-+|++||+.
T Consensus 140 ~~LS~G~~qrv~laral~~----~p~llilDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~ 201 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMM----EPQVLLFDEPTAALDPEITAQIVSIIRELAE--TGITQVIVTHEV 201 (242)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCH
Confidence 3589999999999988874 4689999999999999999999998887754 256799999984
No 211
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.94 E-value=1.8e-05 Score=82.08 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=52.4
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||+.+...+.+.|.+... +.-+|++||+.
T Consensus 153 ~~LS~G~~qrl~laral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~~tiiivtH~~ 213 (269)
T PRK14259 153 YSLSGGQQQRLCIARTIAI----EPEVILMDEPCSALDPISTLKIEETMHELKK---NFTIVIVTHNM 213 (269)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 4589999999999987774 5689999999999999999999998887753 46789999984
No 212
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.94 E-value=1.8e-05 Score=81.47 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=53.5
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
...|||||+.+++||..|+. +.++++|||++++||..+...+.+.|.+... +..+|++||..
T Consensus 144 ~~~LS~Gq~qr~~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tili~sH~~ 205 (250)
T PRK14262 144 GTRLSGGQQQRLCIARALAV----EPEVILLDEPTSALDPIATQRIEKLLEELSE---NYTIVIVTHNI 205 (250)
T ss_pred hhhcCHHHHHHHHHHHHHhC----CCCEEEEeCCccccCHHHHHHHHHHHHHHhc---CcEEEEEeCCH
Confidence 34589999999999988874 5689999999999999999999998888754 57899999984
No 213
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.93 E-value=1.7e-05 Score=81.13 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=52.5
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..|+. +.++++|||++++||+.+...+.+.|.+... +.-+|++||+.
T Consensus 142 ~~LS~Ge~qrv~laral~~----~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~ 202 (242)
T TIGR03411 142 GLLSHGQKQWLEIGMLLMQ----DPKLLLLDEPVAGMTDEETEKTAELLKSLAG---KHSVVVVEHDM 202 (242)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEecCCccCCCHHHHHHHHHHHHHHhc---CCEEEEEECCH
Confidence 4589999999999987764 5689999999999999999999998887764 56899999984
No 214
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.93 E-value=1.8e-05 Score=80.25 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=53.4
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
...|||||+.+++||..|+ .+.|+++|||.+.+||+..+..+++.|..... +..+|++||+.
T Consensus 137 ~~~LS~G~~~rv~la~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~ 198 (229)
T cd03254 137 GGNLSQGERQLLAIARAML----RDPKILILDEATSNIDTETEKLIQEALEKLMK---GRTSIIIAHRL 198 (229)
T ss_pred CCcCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHhcC---CCEEEEEecCH
Confidence 3458999999999998876 35689999999999999999999998887642 67899999984
No 215
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.93 E-value=1.9e-05 Score=81.50 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=52.9
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||-.|+ .+.++++|||++++||..+...+++.|.+... +.-+|++||+.
T Consensus 148 ~~~LSgG~~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tvii~sH~~ 209 (254)
T PRK14273 148 ALSLSGGQQQRLCIARTLA----IEPNVILMDEPTSALDPISTGKIEELIINLKE---SYTIIIVTHNM 209 (254)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 3458999999999998776 34589999999999999999999998888753 57789999984
No 216
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.93 E-value=1.9e-05 Score=81.48 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.|+++|||++.+||+.+...+.+.|.+.... +.-+|++||+.
T Consensus 137 ~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~--~~tiii~tH~~ 198 (255)
T PRK11231 137 TDLSGGQRQRAFLAMVLAQ----DTPVVLLDEPTTYLDINHQVELMRLMRELNTQ--GKTVVTVLHDL 198 (255)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEECCH
Confidence 4589999999999988874 45899999999999999999999988877542 67899999984
No 217
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.93 E-value=1.7e-05 Score=81.43 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=52.8
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 939 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 939 ~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
.||||||.+++||..|+. +.++++|||++++||..++..+.+.|.+... .+.-+|++||+.
T Consensus 144 ~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~vsH~~ 204 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALL----EPKLAILDEIDSGLDIDALKIVAEGINRLRE--PDRSFLIITHYQ 204 (243)
T ss_pred CcCHHHHHHHHHHHHHhc----CCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCcEEEEEEecH
Confidence 389999999999988874 5689999999999999999999999988754 256799999984
No 218
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.93 E-value=2e-05 Score=80.92 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=52.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.|+++|||++.+||+.....+++.|.+... .+..+|++||+.
T Consensus 142 ~~LS~Gq~qrv~Laral~~----~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~--~g~tiIiisH~~ 203 (264)
T PRK13546 142 KKYSSGMRAKLGFSINITV----NPDILVIDEALSVGDQTFAQKCLDKIYEFKE--QNKTIFFVSHNL 203 (264)
T ss_pred ccCCHHHHHHHHHHHHHhh----CCCEEEEeCccccCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCH
Confidence 4589999999999877663 5689999999999999999999988877654 378999999984
No 219
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.93 E-value=2e-05 Score=82.40 Aligned_cols=62 Identities=23% Similarity=0.303 Sum_probs=53.5
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||||.+++||-.|+. +.|+++|||++++||+..+..+.+.|.++... +.-+|++||+.
T Consensus 143 ~~LSgGqkqrvaiA~aL~~----~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~--g~til~vtHd~ 204 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAM----EPEVLVLDEPTAGLDPKARIEMMQLFESIHQS--GQTVVLVTHLM 204 (288)
T ss_pred ccCCHHHHHHHHHHHHHHh----CCCEEEEECCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCH
Confidence 4589999999999998885 45899999999999999999999888776542 67899999984
No 220
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.93 E-value=2e-05 Score=82.01 Aligned_cols=62 Identities=19% Similarity=0.337 Sum_probs=52.8
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+.... +.=+|++||..
T Consensus 135 ~~LSgG~~qrl~laraL~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tii~vtH~~ 196 (271)
T PRK13638 135 QCLSHGQKKRVAIAGALVL----QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ--GNHVIISSHDI 196 (271)
T ss_pred hhCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 4589999999999988874 56899999999999999999999988887642 55688999884
No 221
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.93 E-value=1.7e-05 Score=82.33 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=53.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.|+++|||.+++||..+...+.+.|.+... ..+.-+|++||..
T Consensus 142 ~~LSgGq~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tiiivsH~~ 204 (269)
T PRK11831 142 SELSGGMARRAALARAIAL----EPDLIMFDEPFVGQDPITMGVLVKLISELNS-ALGVTCVVVSHDV 204 (269)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCcEEEEEecCH
Confidence 4589999999999988773 4689999999999999999999998887754 1257899999983
No 222
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.93 E-value=1.9e-05 Score=81.20 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=52.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||..++..+.+.|.+... +..+|++||+.
T Consensus 145 ~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~ 205 (250)
T PRK14240 145 LGLSGGQQQRLCIARALAV----EPEVLLMDEPTSALDPISTLKIEELIQELKK---DYTIVIVTHNM 205 (250)
T ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEEeCH
Confidence 4589999999999988774 5689999999999999999999998887743 57899999984
No 223
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.92 E-value=2e-05 Score=81.85 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=53.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.|+++|||++++||+.+...+.+.|.+.... +.-+|++||+.
T Consensus 141 ~~LSgG~~qrv~laraL~~----~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--g~tviivsH~~ 202 (272)
T PRK15056 141 GELSGGQKKRVFLARAIAQ----QGQVILLDEPFTGVDVKTEARIISLLRELRDE--GKTMLVSTHNL 202 (272)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence 4589999999999988773 56899999999999999999999998877542 56799999984
No 224
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.92 E-value=1.8e-05 Score=81.68 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=53.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+ .+.|+++|||++.+||+.++..+.+.|.+.+. ..+.-+|++||+.
T Consensus 147 ~~LSgG~~qrv~laral~----~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~vsH~~ 209 (253)
T TIGR02323 147 RAFSGGMQQRLQIARNLV----TRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR-DLGLAVIIVTHDL 209 (253)
T ss_pred hhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 458999999999998876 35689999999999999999999998887654 2367899999984
No 225
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.92 E-value=2.1e-05 Score=83.10 Aligned_cols=62 Identities=24% Similarity=0.446 Sum_probs=54.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. +.++++|||.+++||+..+..+++.|.+...+ +.-+|++||+.
T Consensus 175 ~~LSgGqkqRvaiAraL~~----~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~--g~TiiivtHd~ 236 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAI----QPEILIFDEPTAGLDPKGEHEMMQLILDAKAN--NKTVFVITHTM 236 (320)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEECCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCH
Confidence 3489999999999998875 57899999999999999999999988877542 67899999994
No 226
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.92 E-value=2e-05 Score=79.46 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=52.5
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.|+++|||.+++||+.++..+.+.|.+... +..+|++||..
T Consensus 138 ~~LS~G~~qr~~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~ 198 (221)
T cd03244 138 ENLSVGQRQLLCLARALLR----KSKILVLDEATASVDPETDALIQKTIREAFK---DCTVLTIAHRL 198 (221)
T ss_pred CcCCHHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHhcC---CCEEEEEeCCH
Confidence 4589999999999988873 4689999999999999999999998887653 57899999984
No 227
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.92 E-value=1.9e-05 Score=80.65 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=59.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeEE
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSI 1017 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~~v 1017 (1051)
..|||||+.+++||..++. +.++++|||++++||+.++..+.+.|.+.. .+..+|++||+. ..+.+.+ ++
T Consensus 138 ~~LS~G~~qrv~la~al~~----~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~g~~vi~~sh~~-~~~~~~d--~v 207 (238)
T cd03249 138 SQLSGGQKQRIAIARALLR----NPKILLLDEATSALDAESEKLVQEALDRAM---KGRTTIVIAHRL-STIRNAD--LI 207 (238)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHhc---CCCEEEEEeCCH-HHHhhCC--EE
Confidence 4589999999999987763 568999999999999999999999887764 267899999984 2223322 34
Q ss_pred EEEecCCC
Q 001573 1018 LNIMNGPW 1025 (1051)
Q Consensus 1018 ~~~~~g~~ 1025 (1051)
+.+.+|--
T Consensus 208 ~~l~~G~i 215 (238)
T cd03249 208 AVLQNGQV 215 (238)
T ss_pred EEEECCEE
Confidence 44456643
No 228
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.92 E-value=0.065 Score=60.66 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001573 619 EIERLRSKKKKLEESVDEL 637 (1051)
Q Consensus 619 ~~~~l~~~~~~l~~~~~~~ 637 (1051)
.+..|..+++.+..+..+=
T Consensus 232 QvrdLtEkLetlR~kR~ED 250 (1243)
T KOG0971|consen 232 QVRDLTEKLETLRLKRAED 250 (1243)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 3455555555554444433
No 229
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.92 E-value=1.9e-05 Score=83.42 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=53.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||||.+++||..|+. +.++++|||+++|||+.++..+.+.|.+.+.. +.-+|++||..
T Consensus 134 ~~LSgG~~qrv~la~al~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~--g~til~~sH~~ 195 (303)
T TIGR01288 134 ALLSGGMKRRLTLARALIN----DPQLLILDEPTTGLDPHARHLIWERLRSLLAR--GKTILLTTHFM 195 (303)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEECCCH
Confidence 4589999999999988773 56899999999999999999999999887642 66799999984
No 230
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.92 E-value=8.3e-06 Score=79.96 Aligned_cols=118 Identities=22% Similarity=0.259 Sum_probs=58.4
Q ss_pred ceEEecC-CceeEEEcCCCCChHHHHHHHHHHhcCCCccccccccccccc---ccCCceeEEEEEEEecCCCceEEEEEE
Q 001573 36 HLICKPG-SRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYV---KRGEESGYIKISLRGDTKEEHLTIMRK 111 (1051)
Q Consensus 36 ~~~i~f~-~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i---~~g~~~a~v~i~~~~~~~~~~~~i~R~ 111 (1051)
+.++.+. ..++.|+|||||||||++.+|.-.|- +..|+-.-...-+ +.+..-++|-=.+.. +.+-.++|.+.
T Consensus 22 ~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~-d~~fP~tV~d~ 97 (254)
T COG1121 22 DISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSV-DRSFPITVKDV 97 (254)
T ss_pred ccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEccccccccccCCeEEEcCccccc-CCCCCcCHHHH
Confidence 3444444 35999999999999999988854442 1111100000000 011122444332211 23345555554
Q ss_pred EecC--CcceEEECCeeecHHHHHHHHHHcCcc--ccccccccccchHHH
Q 001573 112 IDTR--NKSEWFFNGKVVPKGEVLEITKRFNIQ--VNNLTQFLPQDRVCE 157 (1051)
Q Consensus 112 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~l~Q~~~~~ 157 (1051)
+..+ +...|+---.+.....+.+.|...|+. .+.+..-|+.|+...
T Consensus 98 V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QR 147 (254)
T COG1121 98 VLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQR 147 (254)
T ss_pred HHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHH
Confidence 4332 111122111223356788888888875 344555666666543
No 231
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.92 E-value=2.1e-05 Score=79.42 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=53.3
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||..|+ .+.++++|||++.+||+.....+.+.|.+.... +.-+|++||..
T Consensus 147 ~~~LS~G~~qrl~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--g~tii~vsH~~ 209 (224)
T TIGR02324 147 PATFSGGEQQRVNIARGFI----ADYPILLLDEPTASLDAANRQVVVELIAEAKAR--GAALIGIFHDE 209 (224)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCH
Confidence 3458999999999998776 356899999999999999999999988887542 67899999993
No 232
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.92 E-value=2e-05 Score=80.38 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=59.8
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeE
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACS 1016 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~~ 1016 (1051)
+..|||||+.+++||..++. +.++++|||.+++||+.+...+.+.|.+.+. +.-+|++||+.- .+...+ .
T Consensus 136 ~~~LSgG~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~-~~~~~d--~ 205 (237)
T cd03252 136 GAGLSGGQRQRIAIARALIH----NPRILIFDEATSALDYESEHAIMRNMHDICA---GRTVIIIAHRLS-TVKNAD--R 205 (237)
T ss_pred CCcCCHHHHHHHHHHHHHhh----CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC---CCEEEEEeCCHH-HHHhCC--E
Confidence 34589999999999988773 4679999999999999999999999887753 667999999842 222222 4
Q ss_pred EEEEecCCC
Q 001573 1017 ILNIMNGPW 1025 (1051)
Q Consensus 1017 v~~~~~g~~ 1025 (1051)
++.+.+|--
T Consensus 206 v~~l~~G~i 214 (237)
T cd03252 206 IIVMEKGRI 214 (237)
T ss_pred EEEEECCEE
Confidence 454456643
No 233
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.92 E-value=1.9e-05 Score=81.55 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=53.3
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
...|||||+.+++||..|+. +.++++|||++++||..++..+.+.|.+... +..+|++||+.
T Consensus 153 ~~~LS~Gq~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivtH~~ 214 (259)
T PRK14274 153 ALSLSGGQQQRLCIARALAT----NPDVLLMDEPTSALDPVSTRKIEELILKLKE---KYTIVIVTHNM 214 (259)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcCH
Confidence 34589999999999987774 5689999999999999999999998888753 57899999984
No 234
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.92 E-value=1.8e-05 Score=80.26 Aligned_cols=63 Identities=22% Similarity=0.305 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. +.|+++|||++++||+.++..+.+.|.+.+. ..+.-+|++||..
T Consensus 144 ~~LS~G~~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~ 206 (228)
T cd03257 144 HELSGGQRQRVAIARALAL----NPKLLIADEPTSALDVSVQAQILDLLKKLQE-ELGLTLLFITHDL 206 (228)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEecCCCCCCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCH
Confidence 4589999999999987763 6789999999999999999999998887764 1256799999984
No 235
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.91 E-value=2e-05 Score=82.74 Aligned_cols=63 Identities=21% Similarity=0.365 Sum_probs=53.9
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||-.|+. +.++++|||++++||+.++..+.+.|.+... .+.-+|+|||+.
T Consensus 163 ~~~LSgGqkqrvalA~aL~~----~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tiiivtHd~ 225 (305)
T PRK13651 163 PFELSGGQKRRVALAGILAM----EPDFLVFDEPTAGLDPQGVKEILEIFDNLNK--QGKTIILVTHDL 225 (305)
T ss_pred hhhCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeeCH
Confidence 34589999999999998885 4589999999999999999999998887764 266799999994
No 236
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.91 E-value=2.1e-05 Score=81.20 Aligned_cols=62 Identities=23% Similarity=0.313 Sum_probs=53.1
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||..++. +.|+++|||++++||..+...+++.|.+... +..+|++||+.
T Consensus 146 ~~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~ 207 (252)
T PRK14239 146 ALGLSGGQQQRVCIARVLAT----SPKIILLDEPTSALDPISAGKIEETLLGLKD---DYTMLLVTRSM 207 (252)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEcCCccccCHHHHHHHHHHHHHHhh---CCeEEEEECCH
Confidence 34589999999999987773 5689999999999999999999998887754 47899999984
No 237
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.91 E-value=2.1e-05 Score=80.94 Aligned_cols=61 Identities=15% Similarity=0.235 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||.+++||..+...+.+.|.+... +..+|++||..
T Consensus 148 ~~LS~Gq~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiiisH~~ 208 (251)
T PRK14244 148 FELSGGQQQRLCIARAIAV----KPTMLLMDEPCSALDPVATNVIENLIQELKK---NFTIIVVTHSM 208 (251)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCH
Confidence 4589999999999987773 5689999999999999999999998887743 68899999984
No 238
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.91 E-value=2e-05 Score=80.03 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..|+. +.++++|||++++||+.+...+.+.|.+.+. ..+.-+|++||..
T Consensus 152 ~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~ 214 (236)
T cd03267 152 RQLSLGQRMRAEIAAALLH----EPEILFLDEPTIGLDVVAQENIRNFLKEYNR-ERGTTVLLTSHYM 214 (236)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCEEEEEecCH
Confidence 3489999999999988874 4689999999999999999999998887754 2256788999984
No 239
>PRK11637 AmiB activator; Provisional
Probab=97.91 E-value=0.0083 Score=66.85 Aligned_cols=75 Identities=12% Similarity=0.185 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 619 EIERLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESI 693 (1051)
Q Consensus 619 ~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~~~~~l~~l 693 (1051)
.+..+..++..+..++..++.++..+..++..+..++..+..++..+..++..+..++..++.+|..++..+...
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666655555555555555555555555555555555555555555555555554443
No 240
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.91 E-value=2e-05 Score=79.77 Aligned_cols=63 Identities=24% Similarity=0.315 Sum_probs=52.6
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.++++|||++++||..+...+++.|.+... ..+.-+|++||..
T Consensus 124 ~~LS~G~~qrv~laral~~----~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~ 186 (230)
T TIGR02770 124 FQLSGGMLQRVMIALALLL----EPPFLIADEPTTDLDVVNQARVLKLLRELRQ-LFGTGILLITHDL 186 (230)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEEcCCccccCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4589999999999988873 4589999999999999999999998887753 1256788888883
No 241
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.91 E-value=2.5e-05 Score=75.37 Aligned_cols=62 Identities=26% Similarity=0.466 Sum_probs=53.0
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
...|||||+.+++||..++. +.|+++|||++++||......+++.|.+... +.=+|++||+.
T Consensus 96 ~~~LS~G~~qrv~laral~~----~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~ 157 (178)
T cd03247 96 GRRFSGGERQRLALARILLQ----DAPIVLLDEPTVGLDPITERQLLSLIFEVLK---DKTLIWITHHL 157 (178)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEECCcccCCHHHHHHHHHHHHHHcC---CCEEEEEecCH
Confidence 45699999999999988773 4589999999999999999999998877642 67789999884
No 242
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.91 E-value=2.1e-05 Score=82.38 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=52.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||+.++..+.+.|.+.... +.=+|++||..
T Consensus 144 ~~LSgG~~qrv~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiiivsH~~ 205 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAM----EPKILVLDEPTAGLDPKGRKELMTLFKKLHQS--GMTIVLVTHLM 205 (280)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeccH
Confidence 4589999999999988874 46899999999999999999999998877542 56788999984
No 243
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.91 E-value=2.2e-05 Score=79.93 Aligned_cols=79 Identities=24% Similarity=0.352 Sum_probs=60.6
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeEE
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSI 1017 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~~v 1017 (1051)
..|||||+.+++||..|+. +.++++|||++.+||+.+...+.+.|.+... +..+|++||+. ..+.. .-.+
T Consensus 137 ~~LS~G~~qrv~la~al~~----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~-~~~~~--~d~v 206 (234)
T cd03251 137 VKLSGGQRQRIAIARALLK----DPPILILDEATSALDTESERLVQAALERLMK---NRTTFVIAHRL-STIEN--ADRI 206 (234)
T ss_pred CcCCHHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHhcC---CCEEEEEecCH-HHHhh--CCEE
Confidence 4589999999999988874 4679999999999999999999998887753 67899999985 22222 2245
Q ss_pred EEEecCCCC
Q 001573 1018 LNIMNGPWI 1026 (1051)
Q Consensus 1018 ~~~~~g~~~ 1026 (1051)
+.+.+|.-+
T Consensus 207 ~~l~~G~i~ 215 (234)
T cd03251 207 VVLEDGKIV 215 (234)
T ss_pred EEecCCeEe
Confidence 545566543
No 244
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.91 E-value=2.3e-05 Score=81.04 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=52.8
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||.+++||..+...+.+.|.+... +.-+|++||+.
T Consensus 155 ~~LS~Gq~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tiii~sH~~ 215 (260)
T PRK10744 155 YSLSGGQQQRLCIARGIAI----RPEVLLLDEPCSALDPISTGRIEELITELKQ---DYTVVIVTHNM 215 (260)
T ss_pred CCCCHHHHHHHHHHHHHHC----CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCH
Confidence 4589999999999988874 5689999999999999999999998888753 56799999984
No 245
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.90 E-value=1.4e-05 Score=84.79 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=53.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+.|||||+.+++||..|+. ..+++|+||.+++||..+...+++.|.++.. ..+.-+|+|||+.
T Consensus 160 ~~LSgG~~QRv~iArAL~~----~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~~~til~iTHdl 222 (331)
T PRK15079 160 HEFSGGQCQRIGIARALIL----EPKLIICDEPVSALDVSIQAQVVNLLQQLQR-EMGLSLIFIAHDL 222 (331)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCH
Confidence 4589999999999998874 3579999999999999999999998887754 2367899999994
No 246
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.90 E-value=2.4e-05 Score=78.42 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCC-CCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTN-CPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~-~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..++. .| .++++|||++.+||+.+...+++.|.+.... +.-+|+|||+.
T Consensus 136 ~~LSgG~~qrv~laral~~---~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~--g~tii~itH~~ 199 (226)
T cd03270 136 PTLSGGEAQRIRLATQIGS---GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDL--GNTVLVVEHDE 199 (226)
T ss_pred CcCCHHHHHHHHHHHHHHh---CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhC--CCEEEEEEeCH
Confidence 4589999999999988873 33 2599999999999999999999998877542 56799999995
No 247
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.90 E-value=2.2e-05 Score=81.51 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. +.|+++|||++.+||..+...+++.|.+... ...+|++||+.
T Consensus 162 ~~LSgGq~qrl~LAral~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tiiivsH~~ 222 (276)
T PRK14271 162 FRLSGGQQQLLCLARTLAV----NPEVLLLDEPTSALDPTTTEKIEEFIRSLAD---RLTVIIVTHNL 222 (276)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 4589999999999988873 4589999999999999999999998887764 47999999984
No 248
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.90 E-value=1.7e-05 Score=78.27 Aligned_cols=74 Identities=18% Similarity=0.259 Sum_probs=59.5
Q ss_pred cccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCC
Q 001573 936 SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEA 1014 (1051)
Q Consensus 936 ~~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~ 1014 (1051)
.+..||||||+++.+|-.|| ..+|+.+|||.+.+||..|--.+++.+.++... .+.=+|+++|..=.-..|.+.
T Consensus 135 ~~~~LSGGerQrv~iArALa----Q~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~-~~~tvv~vlHDlN~A~ryad~ 208 (258)
T COG1120 135 PVDELSGGERQRVLIARALA----QETPILLLDEPTSHLDIAHQIEVLELLRDLNRE-KGLTVVMVLHDLNLAARYADH 208 (258)
T ss_pred cccccChhHHHHHHHHHHHh----cCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCE
Confidence 46789999999999998887 568999999999999999999999999988751 345578888885233456554
No 249
>COG5293 Predicted ATPase [General function prediction only]
Probab=97.90 E-value=0.044 Score=56.92 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHhcC-CcceEEEEeccCCcccccceEEEEEecCCCcccccccc
Q 001573 863 ELKRFLAEIDALKEKWLPTLRNL---VAQINETFSRNFQEM-AVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAH 938 (1051)
Q Consensus 863 ~~~~l~~~i~~l~~~~~~~~~~~---~~~i~~~F~~~f~~l-~~~g~~~l~~~~~~~~~~gl~i~v~~~~~~~~~~~~~~ 938 (1051)
.+..+...+-++.+.....+..- |+.+...|..+...+ .+.|.+.++.+.......|++|.-..|++.
T Consensus 414 ~i~~lkhe~l~~~~r~y~e~q~q~~~~~~~~~lF~~~~r~~yd~~G~L~~~~~kng~~tfg~eI~~~~pd~~-------- 485 (591)
T COG5293 414 YIGTLKHECLDLEERIYTEVQQQCSLFASIGRLFKEMIREVYDCYGSLRVTTNKNGHLTFGAEITDAAPDSA-------- 485 (591)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCceeeeeeeeccCCCch--------
Confidence 34444444445555544444443 777777777777666 567998888333223567888777654442
Q ss_pred ccCCch--HHHHHHHHHHHhcc--cCCCC-ceEeec-cccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCC
Q 001573 939 HQSGGE--RSVSTILYLVSLQD--LTNCP-FRVVDE-INQGMDPINERKMFQQLVRAASQPNTPQCFLLTPK 1004 (1051)
Q Consensus 939 ~lSGGE--rs~~~lalllal~~--~~~~P-f~vlDE-id~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~ 1004 (1051)
|-|- .-.-.+.|.+|++. -+|+| |.+=|- ++-++|+.-...+.......|. +...|||+---+
T Consensus 486 --s~G~~~mki~c~dl~la~lr~~ndpspriliHDgs~f~~~d~rk~~lll~v~~~~ae-srg~Qy~~Tln~ 554 (591)
T COG5293 486 --SLGNTYMKIMCIDLDLAVLRALNDPSPRILIHDGSVFESLDDRKKELLLRVIRQYAE-SRGIQYVMTLND 554 (591)
T ss_pred --hhccceeeeehHHHHHHHHHHccCCCccEEEecCcccCCCcHHHHHHHHHHHHHHHH-hcCCeEEEEecc
Confidence 3331 11223444455433 36777 566777 8889998877766655555553 358899865543
No 250
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.89 E-value=2.5e-05 Score=79.68 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||..+...+.+.|..... ..+.-+|++||..
T Consensus 130 ~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tii~~sH~~ 192 (241)
T PRK14250 130 KNLSGGEAQRVSIARTLAN----NPEVLLLDEPTSALDPTSTEIIEELIVKLKN-KMNLTVIWITHNM 192 (241)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hCCCEEEEEeccH
Confidence 4589999999999988873 5689999999999999999999998887654 1256899999984
No 251
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.89 E-value=2.7e-05 Score=76.45 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=51.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..++. +.|+++|||.+++||+..+..+.+.|..... .+.-+|++||+.
T Consensus 122 ~~LS~G~~~rl~la~al~~----~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~sh~~ 183 (195)
T PRK13541 122 YSLSSGMQKIVAIARLIAC----QSDLWLLDEVETNLSKENRDLLNNLIVMKAN--SGGIVLLSSHLE 183 (195)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCc
Confidence 3489999999999987773 5689999999999999999998888865543 266788888884
No 252
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.89 E-value=1.4e-05 Score=85.19 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=53.3
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 939 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 939 ~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
.|||||+.+++||-.|+ .+.|+++|||.+++||+..+..+.+.|.++.. ..+.-+|++||..
T Consensus 129 ~LSGGq~QRV~lARAL~----~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~-~~~~Tii~vTHd~ 190 (363)
T TIGR01186 129 ELSGGMQQRVGLARALA----AEPDILLMDEAFSALDPLIRDSMQDELKKLQA-TLQKTIVFITHDL 190 (363)
T ss_pred hCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 58999999999999887 35689999999999999999999998887753 2256799999994
No 253
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.89 E-value=2.6e-05 Score=81.41 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=52.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||.+++||..+...+.+.|.+.+. ..-+|++||..
T Consensus 179 ~~LSgGe~qrv~LAraL~~----~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~---~~tiii~tH~~ 239 (285)
T PRK14254 179 LDLSGGQQQRLCIARAIAP----DPEVILMDEPASALDPVATSKIEDLIEELAE---EYTVVIVTHNM 239 (285)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 3589999999999988863 4689999999999999999999998888764 35799999983
No 254
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.89 E-value=2.6e-05 Score=80.22 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=52.1
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 939 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 939 ~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
.|||||+.+++||..++. +.++++|||++++||......+.+.|.+.... +.-+|++||+.
T Consensus 145 ~LS~G~~qrv~laral~~----~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~--~~tiii~sH~~ 205 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVL----EPELCILDESDSGLDIDALKIVADGVNSLRDG--KRSFIIVTHYQ 205 (248)
T ss_pred CCCHHHHHHHHHHHHHHc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence 489999999999987773 46899999999999999999998888776542 56799999984
No 255
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.89 E-value=2.4e-05 Score=81.17 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=52.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||+.+...+.+.|.+.+. +.-+|++||+.
T Consensus 166 ~~LSgGe~qrv~laraL~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivsH~~ 226 (271)
T PRK14238 166 YGLSGGQQQRLCIARCLAI----EPDVILMDEPTSALDPISTLKVEELVQELKK---DYSIIIVTHNM 226 (271)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc---CCEEEEEEcCH
Confidence 3589999999999988773 5689999999999999999999998887764 57899999984
No 256
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.88 E-value=2.1e-05 Score=81.56 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=53.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||.+++||+.+...+.+.|.+... ..+.-+|++||+.
T Consensus 148 ~~LS~G~~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tviivsH~~ 210 (267)
T PRK15112 148 HMLAPGQKQRLGLARALIL----RPKVIIADEALASLDMSMRSQLINLMLELQE-KQGISYIYVTQHL 210 (267)
T ss_pred hhcCHHHHHHHHHHHHHHh----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCcEEEEEeCCH
Confidence 4589999999999988874 5689999999999999999999998888754 1256799999984
No 257
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.88 E-value=0.035 Score=55.35 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001573 841 QEYEHRQRQIEDLSTKQEADKK 862 (1051)
Q Consensus 841 ~~~~~~~~~~~~l~~~~~~l~~ 862 (1051)
+++..+...+.++...+..+..
T Consensus 228 ee~~~~~~elre~~k~ik~l~~ 249 (294)
T COG1340 228 EEFRNLQNELRELEKKIKALRA 249 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 258
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.88 E-value=2.7e-05 Score=80.31 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=53.4
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||..++. +.++++|||++++||..+...+.+.|.+... +.-+|++||+.
T Consensus 146 ~~~LS~Gq~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~vsH~~ 207 (252)
T PRK14255 146 ALSLSGGQQQRVCIARVLAV----KPDVILLDEPTSALDPISSTQIENMLLELRD---QYTIILVTHSM 207 (252)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHHh---CCEEEEEECCH
Confidence 34589999999999987774 5679999999999999999999998888764 46899999984
No 259
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.88 E-value=2.6e-05 Score=85.34 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=52.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||||.+++||..|+. +.++++|||++++||+..+..+++.|.+... .+.-+|++||..
T Consensus 142 ~~LSGGQrQRVaLArAL~~----~P~LLLLDEPTsgLD~~sr~~LlelL~el~~--~G~TIIIVSHdl 203 (549)
T PRK13545 142 KTYSSGMKSRLGFAISVHI----NPDILVIDEALSVGDQTFTKKCLDKMNEFKE--QGKTIFFISHSL 203 (549)
T ss_pred ccCCHHHHHHHHHHHHHHh----CCCEEEEECCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEECCH
Confidence 4589999999999998884 5689999999999999999999998887654 256788999984
No 260
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.88 E-value=2.5e-05 Score=80.93 Aligned_cols=63 Identities=21% Similarity=0.325 Sum_probs=52.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+ .+.++++|||.+++||..++..+.+.|.+.... .+.-+|++||..
T Consensus 159 ~~LS~Gq~qrv~lAral~----~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiii~tH~~ 221 (269)
T cd03294 159 DELSGGMQQRVGLARALA----VDPDILLMDEAFSALDPLIRREMQDELLRLQAE-LQKTIVFITHDL 221 (269)
T ss_pred ccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 358999999999998877 356899999999999999999999988877541 256788999984
No 261
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.87 E-value=2.4e-05 Score=78.30 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..++. +.++++|||++++||+.+...+++.|.+.+.+ .+.-+|++||+.
T Consensus 129 ~~LS~G~~qr~~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~sH~~ 191 (213)
T cd03301 129 KQLSGGQRQRVALGRAIVR----EPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR-LGTTTIYVTHDQ 191 (213)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 3589999999999988773 56899999999999999999999988887641 256799999984
No 262
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.87 E-value=2.7e-05 Score=80.28 Aligned_cols=62 Identities=16% Similarity=0.270 Sum_probs=53.2
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||..|+. +.|+++|||++++||..++..+.+.|.+... +.-+|++||..
T Consensus 146 ~~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~ 207 (252)
T PRK14272 146 ATGLSGGQQQRLCIARALAV----EPEILLMDEPTSALDPASTARIEDLMTDLKK---VTTIIIVTHNM 207 (252)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCH
Confidence 34589999999999987774 4589999999999999999999998887753 57899999984
No 263
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.87 E-value=2.8e-05 Score=80.63 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=52.4
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++.+||+.+...+.+.|.+.+. +.-+|++||+.
T Consensus 162 ~~LSgGq~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~---~~tiiivtH~~ 222 (267)
T PRK14235 162 TGLSGGQQQRLCIARAIAV----SPEVILMDEPCSALDPIATAKVEELIDELRQ---NYTIVIVTHSM 222 (267)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc---CCeEEEEEcCH
Confidence 4589999999999988874 5689999999999999999999999987754 46788899983
No 264
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=2.6e-05 Score=80.83 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=53.5
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||.+++||..+...+.+.|.+.+.. .+.-+|++||+.
T Consensus 146 ~~LSgG~~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-~~~tiii~sH~~ 208 (265)
T PRK10575 146 DSLSGGERQRAWIAMLVAQ----DSRCLLLDEPTSALDIAHQVDVLALVHRLSQE-RGLTVIAVLHDI 208 (265)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 3589999999999988874 56899999999999999999999988887541 256799999984
No 265
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.87 E-value=2.7e-05 Score=80.97 Aligned_cols=62 Identities=19% Similarity=0.294 Sum_probs=53.1
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||..|+. +.++++|||++++||+..+..+.+.|.+... ..-+|++||+.
T Consensus 162 ~~~LSgGq~qrl~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~ 223 (268)
T PRK14248 162 ALSLSGGQQQRLCIARTLAM----KPAVLLLDEPASALDPISNAKIEELITELKE---EYSIIIVTHNM 223 (268)
T ss_pred cccCCHHHHHHHHHHHHHhC----CCCEEEEcCCCcccCHHHHHHHHHHHHHHhc---CCEEEEEEeCH
Confidence 34589999999999988873 5689999999999999999999998888754 46799999994
No 266
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=97.87 E-value=2.4e-05 Score=83.26 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=53.7
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||.+++||+.++..+.+.|.+... ..+.-+|++||..
T Consensus 99 ~~LSgGq~qRvalaraL~~----~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~-~~g~tiiivTHd~ 161 (325)
T TIGR01187 99 HQLSGGQQQRVALARALVF----KPKILLLDEPLSALDKKLRDQMQLELKTIQE-QLGITFVFVTHDQ 161 (325)
T ss_pred hhCCHHHHHHHHHHHHHHh----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4589999999999998874 5689999999999999999999998887754 2357899999984
No 267
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.87 E-value=3.2e-05 Score=71.15 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=48.9
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
|||||+.+++||..++. +.|+++|||.+.+||..+...+.+.|.+. ...+|++||..
T Consensus 71 lS~G~~~rv~laral~~----~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~ 127 (144)
T cd03221 71 LSGGEKMRLALAKLLLE----NPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDR 127 (144)
T ss_pred CCHHHHHHHHHHHHHhc----CCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCH
Confidence 89999999999887763 56899999999999999999988888654 34789999984
No 268
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.87 E-value=3e-05 Score=79.75 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=53.1
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
...|||||+.+++||..++. +.++++|||.+++||+.+...+.+.|.+.+. ..-+|++||+.
T Consensus 143 ~~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~ 204 (249)
T PRK14253 143 AFGLSGGQQQRLCIARTIAM----EPDVILMDEPTSALDPIATHKIEELMEELKK---NYTIVIVTHSM 204 (249)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEecCH
Confidence 34589999999999987763 4579999999999999999999998888764 47899999984
No 269
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.87 E-value=2.8e-05 Score=78.35 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.++++|||++++||+.+...+...|.+.... .+.-+|++||+.
T Consensus 136 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sh~~ 198 (225)
T PRK10247 136 AELSGGEKQRISLIRNLQF----MPKVLLLDEITSALDESNKHNVNEIIHRYVRE-QNIAVLWVTHDK 198 (225)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCh
Confidence 4589999999999987773 56899999999999999999999988877541 256799999884
No 270
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.87 E-value=2.7e-05 Score=79.55 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=52.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.|+++|||++.+||+.+...+++.|.+.... .+.-+|++||+.
T Consensus 119 ~~LSgGq~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tiiivsH~~ 181 (251)
T PRK09544 119 QKLSGGETQRVLLARALLN----RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRE-LDCAVLMVSHDL 181 (251)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCH
Confidence 4589999999999988774 56899999999999999999999888876541 256799999984
No 271
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.87 E-value=2.6e-05 Score=80.33 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=52.8
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.++++|||++.+||+.++..+.+.|...+. ...+|++||+.
T Consensus 148 ~~LS~G~~qrv~laral~~----~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~---~~tvii~sh~~ 208 (253)
T PRK14261 148 LSLSGGQQQRLCIARTLAV----NPEVILMDEPCSALDPIATAKIEDLIEDLKK---EYTVIIVTHNM 208 (253)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHhh---CceEEEEEcCH
Confidence 3589999999999987774 4689999999999999999999988887764 47899999984
No 272
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.86 E-value=2.7e-05 Score=79.00 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.++++|||++.+||+.+...+.+.|.+... ..+.-+|++||+.
T Consensus 130 ~~LS~G~~qrv~la~al~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~ 192 (230)
T TIGR03410 130 GDLSGGQQQQLAIARALVT----RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA-EGGMAILLVEQYL 192 (230)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEecCCcccCCHHHHHHHHHHHHHHHH-cCCcEEEEEeCCH
Confidence 3589999999999987774 5689999999999999999999998887654 1257899999984
No 273
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.86 E-value=2.8e-05 Score=81.30 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=52.5
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||.+.+||......+.+.|.+... ..-+|++||+.
T Consensus 181 ~~LSgGq~qrv~LAraL~~----~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~---~~tvIivsH~~ 241 (286)
T PRK14275 181 LGLSGGQQQRLCVARTLAV----EPEILLLDEPTSALDPKATAKIEDLIQELRG---SYTIMIVTHNM 241 (286)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCH
Confidence 3589999999999987774 4589999999999999999999998887754 46899999984
No 274
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.86 E-value=3.1e-05 Score=78.18 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=53.5
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.++++|..++. +.++++|||++++||+.+...+.+.|.+.... +.-+|++||+.
T Consensus 141 ~~~LS~G~~qrl~laral~~----~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~--~~tiii~sh~~ 203 (226)
T cd03234 141 VKGISGGERRRVSIAVQLLW----DPKVLILDEPTSGLDSFTALNLVSTLSQLARR--NRIVILTIHQP 203 (226)
T ss_pred ccCcCHHHHHHHHHHHHHHh----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCC
Confidence 34589999999999988874 46899999999999999999999988876542 67888899985
No 275
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.86 E-value=2.3e-05 Score=80.07 Aligned_cols=63 Identities=19% Similarity=0.344 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+ .+.|+++|||++.+||..+...+.+.|.+... ..+.-+|++||+.
T Consensus 134 ~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~g~tvii~sH~~ 196 (242)
T cd03295 134 HELSGGQQQRVGVARALA----ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQ-ELGKTIVFVTHDI 196 (242)
T ss_pred hhCCHHHHHHHHHHHHHh----cCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEecCH
Confidence 458999999999998776 35689999999999999999999998888764 1256799999984
No 276
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.86 E-value=2.5e-05 Score=82.93 Aligned_cols=63 Identities=19% Similarity=0.288 Sum_probs=53.5
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||||.+++||-.|+. +.+++++||.+++||+.++..+++.|.+... ..+.-+|+|||..
T Consensus 139 ~~LSgGqkQRV~IARAL~~----~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~-~~g~tiiliTH~~ 201 (343)
T TIGR02314 139 SNLSGGQKQRVAIARALAS----NPKVLLCDEATSALDPATTQSILELLKEINR-RLGLTILLITHEM 201 (343)
T ss_pred hhCCHHHHHHHHHHHHHHh----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4589999999999998884 4579999999999999999999999988764 1256799999984
No 277
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.86 E-value=3e-05 Score=79.89 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHHHHHHhcc--cCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQD--LTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~--~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+..- -.+.++++|||++++||+.+...+.+.|.+.++. .+.-+|++||..
T Consensus 133 ~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~ 201 (258)
T PRK13548 133 PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE-RGLAVIVVLHDL 201 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCH
Confidence 458999999999998877310 0245799999999999999999999999887621 256789999883
No 278
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.86 E-value=2.7e-05 Score=80.31 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=53.3
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||..|+. +.++++|||.+++||+.+...+.+.|.+.+. +.-+|++||..
T Consensus 147 ~~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~ 208 (253)
T PRK14267 147 PSNLSGGQRQRLVIARALAM----KPKILLMDEPTANIDPVGTAKIEELLFELKK---EYTIVLVTHSP 208 (253)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHhh---CCEEEEEECCH
Confidence 34589999999999987763 5689999999999999999999999988754 47899999984
No 279
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.85 E-value=3.1e-05 Score=80.46 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=52.8
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||..+...+.+.|.+... ..-+|++||+.
T Consensus 160 ~~LSgGq~qrv~LAraL~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tiii~sH~~ 220 (274)
T PRK14265 160 TALSGGQQQRLCIARAIAM----KPDVLLMDEPCSALDPISTRQVEELCLELKE---QYTIIMVTHNM 220 (274)
T ss_pred ccCCHHHHHHHHHHHHHhh----CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 4589999999999988763 5689999999999999999999999988753 46799999994
No 280
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.85 E-value=3e-05 Score=81.85 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++.|||..+...+.+.|.+... ...+|++||+.
T Consensus 199 ~~LSgGq~qrv~LAraL~~----~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~---~~tiiivtH~~ 259 (305)
T PRK14264 199 LGLSGGQQQRLCIARCLAV----DPEVILMDEPASALDPIATSKIEDLIEELAE---EYTVVVVTHNM 259 (305)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcCH
Confidence 3489999999999988874 5689999999999999999999998887765 46799999984
No 281
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.85 E-value=3e-05 Score=81.15 Aligned_cols=63 Identities=17% Similarity=0.337 Sum_probs=54.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. +.|+++|||++++||+.++..+.+.|.+.+. ..+.-+|++||..
T Consensus 143 ~~LSgGq~qrv~iAraL~~----~P~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tvi~vtHd~ 205 (287)
T PRK13637 143 FELSGGQKRRVAIAGVVAM----EPKILILDEPTAGLDPKGRDEILNKIKELHK-EYNMTIILVSHSM 205 (287)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEECCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4589999999999988874 4589999999999999999999998888764 2367899999994
No 282
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.85 E-value=2.7e-05 Score=83.48 Aligned_cols=63 Identities=21% Similarity=0.290 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||||.+++||..|+. +.++++|||++++||+.++..+.+.|.+... ..+.-+|++||..
T Consensus 139 ~~LSgGq~qRv~lAraL~~----~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~-~~g~tiilvtH~~ 201 (343)
T PRK11153 139 AQLSGGQKQRVAIARALAS----NPKVLLCDEATSALDPATTRSILELLKDINR-ELGLTIVLITHEM 201 (343)
T ss_pred hhCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4589999999999987773 5689999999999999999999999988754 1256789999984
No 283
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.85 E-value=2.6e-05 Score=80.28 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=53.5
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
...|||||+.+++||..++. +.|+++|||.+++||..+...+.+.|.+... +.-+|++||+.
T Consensus 144 ~~~LS~Gq~qrv~laral~~----~p~llllDEP~~gLD~~~~~~l~~~l~~~~~---~~tiii~sh~~ 205 (250)
T PRK14266 144 ALGLSGGQQQRLCIARTIAV----SPEVILMDEPCSALDPISTTKIEDLIHKLKE---DYTIVIVTHNM 205 (250)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEECCH
Confidence 34589999999999988873 5689999999999999999999998887753 67899999985
No 284
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.85 E-value=2.8e-05 Score=82.52 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=54.4
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
.+.|||||+.+++||..|+. ..+++|+||.+.+||..+...+++.|.++.. ..+.-+|+|||+.
T Consensus 151 p~~LSgGq~QRv~iArAL~~----~P~llilDEPts~LD~~~~~~il~lL~~l~~-~~g~til~iTHdl 214 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIAC----RPKLLIADEPTTALDVTIQAQIIELLLELQQ-KENMALVLITHDL 214 (326)
T ss_pred chhCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 34689999999999998885 3478999999999999999999999988754 2356899999994
No 285
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.85 E-value=3.4e-05 Score=76.72 Aligned_cols=61 Identities=13% Similarity=0.167 Sum_probs=52.7
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||.+.+||+.....+.++|.+... +.-+|++||+.
T Consensus 124 ~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~th~~ 184 (207)
T cd03369 124 LNLSQGQRQLLCLARALLK----RPRVLVLDEATASIDYATDALIQKTIREEFT---NSTILTIAHRL 184 (207)
T ss_pred CcCCHHHHHHHHHHHHHhh----CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC---CCEEEEEeCCH
Confidence 4589999999999988863 5689999999999999999999998887642 67899999984
No 286
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.85 E-value=3.4e-05 Score=79.50 Aligned_cols=61 Identities=23% Similarity=0.295 Sum_probs=52.5
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+ .+.++++|||.+++||+.+...+.+.|.+... ++.+|++||+.
T Consensus 148 ~~LS~G~~qrv~laral~----~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~---~~tii~isH~~ 208 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIA----TEPEVLLLDEPCSALDPIATRRVEELMVELKK---DYTIALVTHNM 208 (261)
T ss_pred ccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCH
Confidence 458999999999998776 35689999999999999999999999987743 57899999984
No 287
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.85 E-value=3.2e-05 Score=79.79 Aligned_cols=60 Identities=22% Similarity=0.339 Sum_probs=52.4
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
|||||+.+++||..++. +.++++|||.+++||..+...+.+.|.+... .+.-+|++||+.
T Consensus 152 LSgG~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tii~~tH~~ 211 (252)
T CHL00131 152 FSGGEKKRNEILQMALL----DSELAILDETDSGLDIDALKIIAEGINKLMT--SENSIILITHYQ 211 (252)
T ss_pred CCHHHHHHHHHHHHHHc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCH
Confidence 89999999999988873 4689999999999999999999998888764 267899999983
No 288
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=3.2e-05 Score=80.51 Aligned_cols=62 Identities=23% Similarity=0.410 Sum_probs=53.4
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.|+++|||++++||..+...+++.|.+.... +.-+|++||..
T Consensus 136 ~~LS~Gq~qrv~laral~~----~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~~til~vtH~~ 197 (275)
T PRK13639 136 HHLSGGQKKRVAIAGILAM----KPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE--GITIIISTHDV 197 (275)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCH
Confidence 3589999999999987764 56899999999999999999999999887642 67799999984
No 289
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=3.3e-05 Score=78.83 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=52.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. +.++++|||++.+||+.+...+.+.|.+... +.-+|++||+.
T Consensus 136 ~~LS~G~~~rl~la~aL~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sh~~ 196 (236)
T cd03253 136 LKLSGGEKQRVAIARAILK----NPPILLLDEATSALDTHTEREIQAALRDVSK---GRTTIVIAHRL 196 (236)
T ss_pred CcCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC---CCEEEEEcCCH
Confidence 4589999999999987774 4689999999999999999999988877643 66789999884
No 290
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.84 E-value=3.3e-05 Score=79.89 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=53.1
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||..|+. +.++++|||.+++||..+...+.+.|.+.+. ..-+|++||+.
T Consensus 149 ~~~LSgGq~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tvi~vtH~~ 210 (264)
T PRK14243 149 GLSLSGGQQQRLCIARAIAV----QPEVILMDEPCSALDPISTLRIEELMHELKE---QYTIIIVTHNM 210 (264)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEecCH
Confidence 34589999999999988873 4579999999999999999999999888764 46899999984
No 291
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.84 E-value=3.1e-05 Score=79.78 Aligned_cols=63 Identities=21% Similarity=0.320 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||..+...+++.|.+... ..+..+|++||..
T Consensus 145 ~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~ 207 (252)
T TIGR03005 145 AQLSGGQQQRVAIARALAM----RPKVMLFDEVTSALDPELVGEVLNVIRRLAS-EHDLTMLLVTHEM 207 (252)
T ss_pred hhcCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCH
Confidence 3589999999999988873 4579999999999999999999988887654 1267899999984
No 292
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.84 E-value=3.4e-05 Score=79.75 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=53.6
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+ .+.|+++|||++++||..+...+.+.|.+.+. ..+.-+|++||+.
T Consensus 149 ~~LSgGq~qrv~laral~----~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~-~~~~tiiivsH~~ 211 (261)
T PRK14258 149 LDLSGGQQQRLCIARALA----VKPKVLLMDEPCFGLDPIASMKVESLIQSLRL-RSELTMVIVSHNL 211 (261)
T ss_pred ccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-hCCCEEEEEECCH
Confidence 458999999999999887 35689999999999999999999998887653 1267899999984
No 293
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.84 E-value=2.6e-05 Score=70.94 Aligned_cols=64 Identities=20% Similarity=0.270 Sum_probs=55.1
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+-.||||.|+++-+|=.+|. .| .|.+|||.+.++|.-.++.+-.+|++... ..+.|+++|||..
T Consensus 130 i~qLSGGmrQRvGiARALa~---eP-~~LlLDEPfgAlDa~tRe~mQelLldlw~-~tgk~~lliTH~i 193 (259)
T COG4525 130 IWQLSGGMRQRVGIARALAV---EP-QLLLLDEPFGALDALTREQMQELLLDLWQ-ETGKQVLLITHDI 193 (259)
T ss_pred eEeecchHHHHHHHHHHhhc---Cc-ceEeecCchhhHHHHHHHHHHHHHHHHHH-HhCCeEEEEeccH
Confidence 45699999999999998884 34 38899999999999999999889998875 3588999999994
No 294
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=2.9e-05 Score=81.52 Aligned_cols=63 Identities=19% Similarity=0.355 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||+.++..+++.|.+... ..+.-+|++||..
T Consensus 149 ~~LS~Gq~qrv~laral~~----~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiiiisH~~ 211 (289)
T PRK13645 149 FELSGGQKRRVALAGIIAM----DGNTLVLDEPTGGLDPKGEEDFINLFERLNK-EYKKRIIMVTHNM 211 (289)
T ss_pred hhCCHHHHHHHHHHHHHHh----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCH
Confidence 4589999999999987774 4679999999999999999999998887754 1257899999984
No 295
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.84 E-value=3.3e-05 Score=79.02 Aligned_cols=62 Identities=23% Similarity=0.292 Sum_probs=52.4
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..++. +.++++|||++++||+.....+.+.|..... .+.-+|++||..
T Consensus 136 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiii~sH~~ 197 (241)
T PRK10895 136 QSLSGGERRRVEIARALAA----NPKFILLDEPFAGVDPISVIDIKRIIEHLRD--SGLGVLITDHNV 197 (241)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEEcCH
Confidence 4589999999999987763 5689999999999999999998888877654 267799999984
No 296
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=3.1e-05 Score=83.73 Aligned_cols=63 Identities=21% Similarity=0.351 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+.... .+.-+|++||..
T Consensus 163 ~~LSgGq~QRv~LArAL~~----~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~-~g~TIIivTHd~ 225 (400)
T PRK10070 163 DELSGGMRQRVGLARALAI----NPDILLMDEAFSALDPLIRTEMQDELVKLQAK-HQRTIVFISHDL 225 (400)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCH
Confidence 3589999999999988874 46899999999999999999999988876531 256789999984
No 297
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=3.2e-05 Score=82.03 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=54.1
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
++.|||||+.+++||..|+. ..+++|+||.+.+||..+...++++|.++.. ..+.-+|+|||..
T Consensus 152 p~~LSgGq~QRv~iArAL~~----~P~lLilDEPts~LD~~~~~~i~~lL~~l~~-~~g~til~iTHdl 215 (327)
T PRK11308 152 PHMFSGGQRQRIAIARALML----DPDVVVADEPVSALDVSVQAQVLNLMMDLQQ-ELGLSYVFISHDL 215 (327)
T ss_pred CccCCHHHHHHHHHHHHHHc----CCCEEEEECCCccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCH
Confidence 34689999999999998885 3479999999999999999999998887754 2367899999994
No 298
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=2e-05 Score=84.43 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=53.4
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. +.++++|||.+++||...+..+...|.++.. ..+.-+|++||+.
T Consensus 133 ~~LSgGq~QRvalARAL~~----~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tii~vTHd~ 195 (356)
T PRK11650 133 RELSGGQRQRVAMGRAIVR----EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR-RLKTTSLYVTHDQ 195 (356)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4589999999999988773 4678999999999999999999988887654 2357899999984
No 299
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.83 E-value=3.5e-05 Score=79.46 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++++||..+...+.+.|.+.... +.-+|++||+.
T Consensus 136 ~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~ 197 (256)
T TIGR03873 136 STLSGGERQRVHVARALAQ----EPKLLLLDEPTNHLDVRAQLETLALVRELAAT--GVTVVAALHDL 197 (256)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCccccCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCH
Confidence 3589999999999988875 46899999999999999999999988877542 56799999984
No 300
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=3.9e-05 Score=80.32 Aligned_cols=62 Identities=21% Similarity=0.300 Sum_probs=53.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||||.+++||..|+. +.|+++|||.+++||+.+...+.+.|.+... .+.-+|++||..
T Consensus 144 ~~LSgGq~qrl~laral~~----~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvlivsH~~ 205 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAY----EPEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVILVTHNM 205 (287)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 4589999999999998885 3489999999999999999999998887754 267899999984
No 301
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=3.5e-05 Score=80.67 Aligned_cols=63 Identities=22% Similarity=0.411 Sum_probs=54.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. +.++++|||++++||+.+...+.+.|.++.. ..+..+|++||..
T Consensus 144 ~~LSgGq~qrv~laraL~~----~p~illlDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tvl~vtH~~ 206 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAM----NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT-DENKTIILVSHDM 206 (286)
T ss_pred ccCCHHHHHHHHHHHHHHh----CCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hCCCEEEEEecCH
Confidence 4589999999999998885 4589999999999999999999998887753 1368999999994
No 302
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.82 E-value=3.7e-05 Score=79.85 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=53.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. +.++++|||++++||+.+...+++.|.+.+.. +.-+|++||..
T Consensus 137 ~~LSgG~~qrv~laraL~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--g~tili~tH~~ 198 (274)
T PRK13647 137 YHLSYGQKKRVAIAGVLAM----DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ--GKTVIVATHDV 198 (274)
T ss_pred hhCCHHHHHHHHHHHHHHc----CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 3589999999999998874 46799999999999999999999999887653 67899999994
No 303
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.82 E-value=0.014 Score=67.60 Aligned_cols=91 Identities=13% Similarity=0.239 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHH
Q 001573 629 KLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESIEKEDDINTALAKLVD 708 (1051)
Q Consensus 629 ~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~~~~~l~~l~~~~~~~~~~~~l~~ 708 (1051)
.++.++..++.++...++.-++++.++..+...-..++.++..++.+.+.++.++..+..... .....+..++.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq------~DKq~l~~LEk 495 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQ------QDKQSLQQLEK 495 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 344444444444443333333333333333322223333344444444444444443333221 11123344444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001573 709 QAADLNIQQFKYAIEIK 725 (1051)
Q Consensus 709 ~~~~l~~~~~~~~~~~~ 725 (1051)
++.+.......++.++.
T Consensus 496 rL~eE~~~R~~lEkQL~ 512 (697)
T PF09726_consen 496 RLAEERRQRASLEKQLQ 512 (697)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 304
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.82 E-value=3.5e-05 Score=79.39 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=52.7
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||.+.+||+.+...+.+.|.+... +.-+|++||+.
T Consensus 146 ~~LS~Gq~qr~~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiiiisH~~ 206 (251)
T PRK14251 146 QAFSGGQQQRICIARALAV----RPKVVLLDEPTSALDPISSSEIEETLMELKH---QYTFIMVTHNL 206 (251)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEecCCCccCCHHHHHHHHHHHHHHHc---CCeEEEEECCH
Confidence 4589999999999987763 5689999999999999999999998887753 56799999984
No 305
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.81 E-value=3.5e-05 Score=80.04 Aligned_cols=63 Identities=19% Similarity=0.301 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+ .+.|+++|||.+++||+.++..+++.|.+.... .+.-+|++||..
T Consensus 141 ~~LS~G~~qrl~laral~----~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~ 203 (271)
T PRK13632 141 QNLSGGQKQRVAIASVLA----LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDM 203 (271)
T ss_pred ccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEech
Confidence 458999999999998777 356899999999999999999999999887642 247899999985
No 306
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.81 E-value=2.7e-05 Score=82.87 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=35.6
Q ss_pred ccccccCCCCCCCCCceEEEEEEeccccc---cceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 6 VKRLKVSRGEDDYMPGNIIEIELHNFMTF---DHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~~l~l~nf~~~---~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
-|+.|++.+. .+.+..+..|... |+.+ .+.++.+.+| +.+|+|||||||||++..|+-
T Consensus 28 ~~~~~~~~~~-~~~~i~i~nl~k~-y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~G 89 (340)
T PRK13536 28 EAKASIPGSM-STVAIDLAGVSKS-YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILG 89 (340)
T ss_pred cCchhhcccC-CceeEEEEEEEEE-ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 3566666642 2233333334322 2222 2445555554 999999999999999999864
No 307
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.81 E-value=3.8e-05 Score=79.36 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.++++|||++.+||+.++..+.+.|.+... ..+.-+|++||+.
T Consensus 152 ~~LS~G~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tii~~sH~~ 214 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVT----QPEILMLDEPAAGLNPKETKELDELIAELRN-EHNVTVLLIEHDM 214 (255)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCccCCCHHHHHHHHHHHHHHHh-hcCCEEEEEeCCH
Confidence 4589999999999987774 4689999999999999999999998887754 1257899999984
No 308
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.81 E-value=3.8e-05 Score=79.06 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.++. +.|+++|||.+++||..+...+.+.|.+.+. ..+.-+|++||+.
T Consensus 139 ~~LS~Gq~qrv~laral~~----~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~-~~g~til~~sH~~ 201 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLC----EAPFIIADEPTTDLDVVAQARILDLLESIVQ-KRALGMLLVTHDM 201 (254)
T ss_pred cccCHHHHHHHHHHHHHhc----CCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-hcCcEEEEEecCH
Confidence 4589999999999987773 4589999999999999999999998887754 1257899999984
No 309
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.81 E-value=5.8e-05 Score=69.96 Aligned_cols=44 Identities=27% Similarity=0.376 Sum_probs=33.0
Q ss_pred EEEEeccccccceEEecCCc-eeEEEcCCCCChHHHHHHHHHHhc
Q 001573 25 EIELHNFMTFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALALG 68 (1051)
Q Consensus 25 ~l~l~nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L~ 68 (1051)
++.+.|=+-.....+++.|| +++|+|||||||||++.+|+--|.
T Consensus 8 s~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 8 SYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred EEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC
Confidence 34455555555666776655 999999999999999999986664
No 310
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.81 E-value=3.5e-05 Score=88.28 Aligned_cols=62 Identities=21% Similarity=0.329 Sum_probs=53.8
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||||.+++||..++. +.++++|||+++|||+.+...+.+.|.+.+.. +.-+|++||+.
T Consensus 402 ~~LSgG~kqrl~la~al~~----~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~--g~tiIivsHd~ 463 (510)
T PRK15439 402 RTLSGGNQQKVLIAKCLEA----SPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ--NVAVLFISSDL 463 (510)
T ss_pred ccCCcHHHHHHHHHHHHhh----CCCEEEECCCCcCcChhHHHHHHHHHHHHHhC--CCEEEEECCCH
Confidence 4589999999999998874 57899999999999999999999988887653 56799999984
No 311
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=4.2e-05 Score=79.43 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+++.|.+... ..+.-+|++||..
T Consensus 141 ~~LS~G~~qrl~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tiiivtH~~ 203 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLAL----NPSVIILDEATSMLDPDARQNLLDLVRKVKS-EHNITIISITHDL 203 (269)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCc
Confidence 3589999999999987774 5789999999999999999999998887654 2256789999984
No 312
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.80 E-value=4.1e-05 Score=81.54 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=52.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||+|.+++||..|+. ..++++|||+++|||+.++..+.+.|.+... .+.-+|++||.+
T Consensus 171 ~~LS~G~kqrv~lA~aL~~----~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~--~g~tilisSH~l 232 (340)
T PRK13536 171 SDLSGGMKRRLTLARALIN----DPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFM 232 (340)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCH
Confidence 4589999999999987774 3589999999999999999999999988764 267788888884
No 313
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.80 E-value=4.3e-05 Score=79.18 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=53.5
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||++.+||+.++..+.+.|.+... ..+.-+|++||+.
T Consensus 142 ~~LS~Gq~qrv~laral~~----~p~llllDEPt~gLD~~~~~~l~~~L~~l~~-~~~~tiii~tH~~ 204 (265)
T PRK10253 142 DTLSGGQRQRAWIAMVLAQ----ETAIMLLDEPTTWLDISHQIDLLELLSELNR-EKGYTLAAVLHDL 204 (265)
T ss_pred ccCChHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4589999999999988874 5689999999999999999999998887754 1256899999984
No 314
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.80 E-value=4.2e-05 Score=79.03 Aligned_cols=62 Identities=21% Similarity=0.215 Sum_probs=52.6
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||..|+ .+.|+++|||++++||..+...+.+.|.+... ..-+|++||+.
T Consensus 148 ~~~LS~G~~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~ 209 (259)
T PRK14260 148 ALGLSGGQQQRLCIARALA----IKPKVLLMDEPCSALDPIATMKVEELIHSLRS---ELTIAIVTHNM 209 (259)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 3458999999999998776 35689999999999999999999998888754 46789999984
No 315
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.80 E-value=4.2e-05 Score=78.99 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=52.8
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..|+. +.++++|||++.+||+.+...+.+.|.+... ..+.-+|++||+.
T Consensus 150 ~~LS~Gq~qrl~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~isH~~ 212 (258)
T PRK11701 150 TTFSGGMQQRLQIARNLVT----HPRLVFMDEPTGGLDVSVQARLLDLLRGLVR-ELGLAVVIVTHDL 212 (258)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCH
Confidence 3589999999999988763 5689999999999999999999988877654 2256789999984
No 316
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.80 E-value=4.6e-05 Score=77.94 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=53.3
Q ss_pred cccCCchHHHHHHHHHHHhc-c-cC-CCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQ-D-LT-NCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~-~-~~-~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..|+.. - .. +.++++|||++.+||+.++..+.+.|.+.... +.-+|++||+.
T Consensus 125 ~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--~~tvi~~sH~~ 193 (248)
T PRK03695 125 NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ--GIAVVMSSHDL 193 (248)
T ss_pred ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEecCH
Confidence 45899999999999877731 0 12 35799999999999999999999888877642 56799999984
No 317
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.80 E-value=3.2e-05 Score=74.69 Aligned_cols=64 Identities=20% Similarity=0.314 Sum_probs=54.4
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
++.||||+|+++|||=.++. .-+..+|||.+.+||...+..+.+.|.++-.. ...=+++|||..
T Consensus 128 P~qLSGGMrQRVaiARAL~~----~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~-~~~TvllVTHdi 191 (248)
T COG1116 128 PHQLSGGMRQRVAIARALAT----RPKLLLLDEPFGALDALTREELQDELLRLWEE-TRKTVLLVTHDV 191 (248)
T ss_pred ccccChHHHHHHHHHHHHhc----CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh-hCCEEEEEeCCH
Confidence 57899999999999988874 24578999999999999999999988887653 457799999993
No 318
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.79 E-value=3.3e-05 Score=73.73 Aligned_cols=64 Identities=17% Similarity=0.323 Sum_probs=52.4
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
++.|||||++++-++=.+|- .-|.++|||.+.++|+.++..+-+.+..+-+ .-+.=+|||||..
T Consensus 133 P~eLSGGQQQRVGv~RALAa----dP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~-~l~kTivfVTHDi 196 (309)
T COG1125 133 PHELSGGQQQRVGVARALAA----DPPILLMDEPFGALDPITRKQLQEEIKELQK-ELGKTIVFVTHDI 196 (309)
T ss_pred chhcCcchhhHHHHHHHHhc----CCCeEeecCCccccChhhHHHHHHHHHHHHH-HhCCEEEEEecCH
Confidence 56799999999999988874 3578999999999999999887766666543 2366799999994
No 319
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.79 E-value=4.3e-05 Score=78.69 Aligned_cols=62 Identities=19% Similarity=0.271 Sum_probs=53.1
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||-.|+. +.|+++|||.+.+||..+...+.+.|.+... ...+|++||+.
T Consensus 146 ~~~LS~G~~qrl~laral~~----~p~llllDEP~~gLD~~~~~~l~~~l~~~~~---~~tiiivsH~~ 207 (252)
T PRK14256 146 AMELSGGQQQRLCIARTIAV----KPEVILMDEPASALDPISTLKIEELIEELKE---KYTIIIVTHNM 207 (252)
T ss_pred cCcCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCcEEEEECCH
Confidence 34589999999999987763 4489999999999999999999998888764 57899999984
No 320
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.79 E-value=4.4e-05 Score=79.37 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=52.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+ .+.++++|||.+.+||+.+...+.+.|.+.+. +.-+|++||+.
T Consensus 167 ~~LS~Gq~qrv~laral~----~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~---~~tiiivtH~~ 227 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIA----IEPEVLLLDEPTSALDPISTLKIEELITELKS---KYTIVIVTHNM 227 (272)
T ss_pred ccCCHHHHHHHHHHHHHH----CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCeEEEEeCCH
Confidence 348999999999998876 36689999999999999999999999988764 56799999994
No 321
>PRK13409 putative ATPase RIL; Provisional
Probab=97.79 E-value=2.6e-05 Score=89.72 Aligned_cols=64 Identities=17% Similarity=0.250 Sum_probs=54.2
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||..|+ .+.++++|||.+++||..++..+.+.|.+++.+ .+.=+|+|||+.
T Consensus 451 ~~~LSGGe~QRvaiAraL~----~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tviivsHD~ 514 (590)
T PRK13409 451 VKDLSGGELQRVAIAACLS----RDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEE-REATALVVDHDI 514 (590)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCH
Confidence 3458999999999998777 467899999999999999999999988887652 245689999994
No 322
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.79 E-value=4.4e-05 Score=80.46 Aligned_cols=62 Identities=23% Similarity=0.271 Sum_probs=52.6
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+.||||+|.+++||..|+. ..++++|||.++|||+.++..+.+.|.+.... +.-+|++||.+
T Consensus 137 ~~LS~G~~qrl~la~aL~~----~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~--g~till~sH~l 198 (306)
T PRK13537 137 GELSGGMKRRLTLARALVN----DPDVLVLDEPTTGLDPQARHLMWERLRSLLAR--GKTILLTTHFM 198 (306)
T ss_pred hhCCHHHHHHHHHHHHHhC----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEECCCH
Confidence 4589999999999987763 45799999999999999999999988887542 67788889884
No 323
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.79 E-value=4.7e-05 Score=78.89 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=52.4
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.++. +.++++|||++++||+.+...+++.|.+... +..+|++||..
T Consensus 162 ~~LS~G~~qrl~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~ 222 (267)
T PRK14237 162 LTLSGGQQQRLCIARAIAV----KPDILLMDEPASALDPISTMQLEETMFELKK---NYTIIIVTHNM 222 (267)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEecCH
Confidence 3589999999999987774 4579999999999999999999998887753 57899999984
No 324
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.9e-05 Score=71.73 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=44.0
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLP 1007 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~ 1007 (1051)
...||-|++-++|||=+.. .++|.-||||+++++|..++..+...|..-+.. +-=+|+-||+.++
T Consensus 128 ~~~LSAGQqRRvAlArL~l----s~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~--GGiVllttHq~l~ 192 (209)
T COG4133 128 VGQLSAGQQRRVALARLWL----SPAPLWILDEPFTALDKEGVALLTALMAAHAAQ--GGIVLLTTHQPLP 192 (209)
T ss_pred hhhcchhHHHHHHHHHHHc----CCCCceeecCcccccCHHHHHHHHHHHHHHhcC--CCEEEEecCCccC
Confidence 4457888888888775543 567888888888888888877766666655532 4456666677543
No 325
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.087 Score=58.56 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 001573 850 IEDLSTKQEADKKE 863 (1051)
Q Consensus 850 ~~~l~~~~~~l~~~ 863 (1051)
++-+..++.+|+..
T Consensus 565 idi~n~qlkelk~~ 578 (1118)
T KOG1029|consen 565 IDIFNNQLKELKED 578 (1118)
T ss_pred hhhHHHHHHHHHHH
Confidence 33333344433333
No 326
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.78 E-value=3.2e-05 Score=82.23 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=53.9
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
++.|||||+.+++||..++. .-+++|+||.+.+||..+...+++.|.++.. ..+.=+|||||+.
T Consensus 159 p~~LSgG~~QRv~IArAL~~----~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~g~til~iTHdl 222 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLC----RPKLLIADEPTTALDVTVQAQIMTLLNELKR-EFNTAIIMITHDL 222 (330)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-HcCCEEEEEECCH
Confidence 34589999999999998884 3479999999999999999999998887754 2356799999994
No 327
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.78 E-value=4.1e-05 Score=81.68 Aligned_cols=64 Identities=20% Similarity=0.316 Sum_probs=54.1
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
++.|||||+.+++||..|+. +.+++|+||.+++||......++++|.++.. ..+.-+|+|||++
T Consensus 156 p~~LSgG~~QRv~iArAL~~----~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~g~tii~itHdl 219 (330)
T PRK15093 156 PYELTEGECQKVMIAIALAN----QPRLLIADEPTNAMEPTTQAQIFRLLTRLNQ-NNNTTILLISHDL 219 (330)
T ss_pred chhCCHHHHHHHHHHHHHHC----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCH
Confidence 34689999999999988874 3579999999999999999999999988754 2356799999994
No 328
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.78 E-value=4.6e-05 Score=79.85 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=53.6
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. ..++++|||++++||+.....+++.|.+.+. ..+.-+|++||..
T Consensus 144 ~~LSgGq~qrv~lAraL~~----~P~llllDEPt~~LD~~~~~~l~~~L~~l~~-~~g~tviiitHd~ 206 (290)
T PRK13634 144 FELSGGQMRRVAIAGVLAM----EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK-EKGLTTVLVTHSM 206 (290)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4589999999999998874 4689999999999999999999998887754 1256799999994
No 329
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.78 E-value=5e-05 Score=78.89 Aligned_cols=62 Identities=15% Similarity=0.280 Sum_probs=52.8
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||.+++||+.++..+.+.|.+... .+.-+|++||..
T Consensus 135 ~~LS~G~~qrv~laral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~~tH~~ 196 (274)
T PRK13644 135 KTLSGGQGQCVALAGILTM----EPECLIFDEVTSMLDPDSGIAVLERIKKLHE--KGKTIVYITHNL 196 (274)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCH
Confidence 3589999999999987773 4589999999999999999999998887654 267899999984
No 330
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.78 E-value=2.9e-05 Score=83.27 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=54.2
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||-.|+. +.++++|||.+++||...+..+...|.++.....+.-+|++||..
T Consensus 135 ~~~LSgGq~QRvaLARAL~~----~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~ 199 (362)
T TIGR03258 135 PAQLSGGMQQRIAIARAIAI----EPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ 199 (362)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 34589999999999998874 567899999999999999999998888776521256799999994
No 331
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.77 E-value=4.8e-05 Score=78.86 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=52.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||.+.+||..+...+.+.|.+.+. ..-+|++||+.
T Consensus 160 ~~LS~G~~qrv~laral~~----~p~llllDEPt~gLD~~~~~~l~~~l~~l~~---~~tiiivth~~ 220 (265)
T PRK14252 160 FNLSGGQQQRLCIARALAT----DPEILLFDEPTSALDPIATASIEELISDLKN---KVTILIVTHNM 220 (265)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCEEEEEecCH
Confidence 4589999999999987774 5689999999999999999999998887754 57899999984
No 332
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.77 E-value=3.6e-05 Score=88.66 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=53.8
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..||||||.+++||..|+. +.++++|||.+++||+.+...+++.|.+.+.. .+.=+|+|||..
T Consensus 166 ~~~LSgGq~qrv~iA~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tviivtHd~ 229 (520)
T TIGR03269 166 ARDLSGGEKQRVVLARQLAK----EPFLFLADEPTGTLDPQTAKLVHNALEEAVKA-SGISMVLTSHWP 229 (520)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCH
Confidence 34589999999999998874 56799999999999999999999988887542 245699999984
No 333
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.77 E-value=4e-05 Score=87.92 Aligned_cols=62 Identities=16% Similarity=0.287 Sum_probs=53.4
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||||.+++||..|+. +.++++|||++++||+.++..+++.|...+.. +.-+|++||+.
T Consensus 402 ~~LSgGqkqrv~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tviivsHd~ 463 (500)
T TIGR02633 402 GRLSGGNQQKAVLAKMLLT----NPRVLILDEPTRGVDVGAKYEIYKLINQLAQE--GVAIIVVSSEL 463 (500)
T ss_pred ccCCHHHHHHHHHHHHHhh----CCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC--CCEEEEECCCH
Confidence 3489999999999998883 46899999999999999999999888877653 56699999984
No 334
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.77 E-value=5.3e-05 Score=78.52 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||.+++||..+...+.+.|.+... ..+.-+|++||+.
T Consensus 150 ~~LS~Ge~qrl~laral~~----~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tiiivsH~~ 212 (268)
T PRK10419 150 PQLSGGQLQRVCLARALAV----EPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ-QFGTACLFITHDL 212 (268)
T ss_pred ccCChHHHHHHHHHHHHhc----CCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-HcCcEEEEEECCH
Confidence 3589999999999998874 4579999999999999999999988887654 2267899999993
No 335
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.77 E-value=6.2e-05 Score=76.08 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=52.8
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+... .+.++++|||.+++||+.....+.+.|.++... +.-+|++||+.
T Consensus 168 ~~LSgGe~QRl~LAraL~~~~-~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~--g~tvIiitH~~ 232 (261)
T cd03271 168 TTLSGGEAQRIKLAKELSKRS-TGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK--GNTVVVIEHNL 232 (261)
T ss_pred ccCCHHHHHHHHHHHHHhcCC-CCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence 458999999999998887421 124689999999999999999999988877642 55699999984
No 336
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.77 E-value=3.3e-05 Score=83.18 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=53.6
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. ..++++|||.+++||...+..+...|..+.. ..+.-+|+|||..
T Consensus 143 ~~LSgGq~QRVaLARaL~~----~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~g~tiI~vTHd~ 205 (375)
T PRK09452 143 HQLSGGQQQRVAIARAVVN----KPKVLLLDESLSALDYKLRKQMQNELKALQR-KLGITFVFVTHDQ 205 (375)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4589999999999998874 3478999999999999999998888887764 2367899999994
No 337
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.77 E-value=3.9e-05 Score=82.96 Aligned_cols=63 Identities=17% Similarity=0.116 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. +.++++|||.+++||...+..+.+.|.+... ..+.-+|++||+.
T Consensus 132 ~~LSgGq~QRvaLAraL~~----~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~-~~g~tvI~vTHd~ 194 (369)
T PRK11000 132 KALSGGQRQRVAIGRTLVA----EPSVFLLDEPLSNLDAALRVQMRIEISRLHK-RLGRTMIYVTHDQ 194 (369)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-HhCCEEEEEeCCH
Confidence 4589999999999998873 4679999999999999999999888887654 1256799999994
No 338
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.77 E-value=4.7e-05 Score=77.19 Aligned_cols=63 Identities=17% Similarity=0.117 Sum_probs=53.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+... ..+..+|++||+.
T Consensus 129 ~~lS~G~~qrl~laral~~----~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~~~tiii~sh~~ 191 (232)
T cd03300 129 SQLSGGQQQRVAIARALVN----EPKVLLLDEPLGALDLKLRKDMQLELKRLQK-ELGITFVFVTHDQ 191 (232)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCH
Confidence 3589999999999987774 5689999999999999999999888887654 1267999999984
No 339
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.77 E-value=3.7e-05 Score=87.94 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=54.2
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..||||||.+++||..|+. +.|+++|||++++||+.++..+.+.|.+.+.. +.=+|++||..
T Consensus 133 ~~~LSgG~~qrv~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tvii~tH~~ 195 (490)
T PRK10938 133 FKYLSTGETRKTLLCQALMS----EPDLLILDEPFDGLDVASRQQLAELLASLHQS--GITLVLVLNRF 195 (490)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc--CCeEEEEeCCH
Confidence 44589999999999998874 57899999999999999999999999887652 56689999984
No 340
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.76 E-value=0.063 Score=58.95 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhchhccCCCHHHHHHHHHHHHHHHH
Q 001573 815 IEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIED 852 (1051)
Q Consensus 815 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (1051)
+..+...+..++.++..+...|.....+.+.+.-++.+
T Consensus 298 l~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e 335 (546)
T KOG0977|consen 298 LRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDE 335 (546)
T ss_pred HHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhh
Confidence 33344444555555555555565555555555555443
No 341
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.76 E-value=5.2e-05 Score=79.05 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=54.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. +.|.++|||++++||+.++..+++.|.+.+. ..+.-+|++||+.
T Consensus 139 ~~LSgGq~qrv~lAral~~----~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tilivtH~~ 201 (279)
T PRK13650 139 ARLSGGQKQRVAIAGAVAM----RPKIIILDEATSMLDPEGRLELIKTIKGIRD-DYQMTVISITHDL 201 (279)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCH
Confidence 4589999999999988874 4689999999999999999999998888764 1267899999994
No 342
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.76 E-value=6.2e-05 Score=74.92 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=54.2
Q ss_pred ccccCCchHHHHHHHHHHHhcc----c--CCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQD----L--TNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~----~--~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..+||||+.++++|..|+... . .+.++++|||++++||+.....+.+.|.+.... +.=+|+|||..
T Consensus 121 ~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~--~~tii~itH~~ 193 (213)
T cd03279 121 VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE--NRMVGVISHVE 193 (213)
T ss_pred ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEECch
Confidence 5569999999999999998532 1 234589999999999999999988888776542 56799999974
No 343
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.76 E-value=5.6e-05 Score=66.96 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=50.3
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+.||+=-| .++|. +++|||++++||+.|.+.+-.+|..... ..+.=++-|||..
T Consensus 131 it~lSGGE~QriAliR~L---q~~P~-ILLLDE~TsALD~~nkr~ie~mi~~~v~-~q~vAv~WiTHd~ 194 (223)
T COG4619 131 ITELSGGEKQRIALIRNL---QFMPK-ILLLDEITSALDESNKRNIEEMIHRYVR-EQNVAVLWITHDK 194 (223)
T ss_pred hhhccchHHHHHHHHHHh---hcCCc-eEEecCchhhcChhhHHHHHHHHHHHhh-hhceEEEEEecCh
Confidence 566999999999887433 24554 5689999999999999998888877653 2466788999984
No 344
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.75 E-value=4.8e-05 Score=82.06 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||||.+++||..|+. +.++++|||.+++||+.++..+.+.|.+.... .+.-+|++||..
T Consensus 130 ~~LSgGqkqRvalAraL~~----~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiiivtH~~ 192 (354)
T TIGR02142 130 GRLSGGEKQRVAIGRALLS----SPRLLLMDEPLAALDDPRKYEILPYLERLHAE-FGIPILYVSHSL 192 (354)
T ss_pred hhCCHHHHHHHHHHHHHHc----CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCH
Confidence 4589999999999998874 45899999999999999999999988887642 245699999984
No 345
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.75 E-value=6.1e-05 Score=77.52 Aligned_cols=62 Identities=15% Similarity=0.241 Sum_probs=52.8
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||..|+. +.++++|||.+++||..+...+.+.|.+... +.-+|++||+.
T Consensus 145 ~~~LS~Gq~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tilivsh~~ 206 (251)
T PRK14249 145 GLALSGGQQQRLCIARVLAI----EPEVILMDEPCSALDPVSTMRIEELMQELKQ---NYTIAIVTHNM 206 (251)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 34589999999999998873 4589999999999999999999988877642 67899999984
No 346
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.75 E-value=5.6e-05 Score=78.76 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=53.8
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. +.|+++|||.+.+||+.+...+.+.|.+... ..+.-+|++||..
T Consensus 139 ~~LS~G~~qrv~lAraL~~----~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tiil~sH~~ 201 (277)
T PRK13642 139 ARLSGGQKQRVAVAGIIAL----RPEIIILDESTSMLDPTGRQEIMRVIHEIKE-KYQLTVLSITHDL 201 (277)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4589999999999998874 4589999999999999999999998887754 2367899999994
No 347
>PRK11637 AmiB activator; Provisional
Probab=97.74 E-value=0.023 Score=63.41 Aligned_cols=69 Identities=9% Similarity=0.071 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 621 ERLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRK 689 (1051)
Q Consensus 621 ~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~~~~~ 689 (1051)
..+..++..+..++..+..++..+..++..+..++..+..++..++.++..+..++..++.++...+..
T Consensus 57 ~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 57 AAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444444444444444433
No 348
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.74 E-value=5.7e-05 Score=78.04 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=54.3
Q ss_pred ccccCCchHHHHHHHHHHHh-cc----cCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSL-QD----LTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal-~~----~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.++++|..|+. |. ..+.++++|||.+.+||+.++..+.+.|.+... ..+.-+|++||..
T Consensus 143 ~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tviiisH~~ 215 (272)
T PRK13547 143 VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLAR-DWNLGVLAIVHDP 215 (272)
T ss_pred cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCH
Confidence 34589999999999988874 11 134589999999999999999999998887754 1256799999984
No 349
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.74 E-value=4.8e-05 Score=87.08 Aligned_cols=62 Identities=16% Similarity=0.241 Sum_probs=53.6
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||||.+++||..++. +.++++|||++++||+.+...+.+.|.+.+.. +.-+|++||..
T Consensus 394 ~~LSgGekqrv~lA~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tviivtHd~ 455 (501)
T PRK10762 394 GLLSGGNQQKVAIARGLMT----RPKVLILDEPTRGVDVGAKKEIYQLINQFKAE--GLSIILVSSEM 455 (501)
T ss_pred hhCCHHHHHHHHHHHHHhh----CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC--CCEEEEEcCCH
Confidence 4589999999999998874 56899999999999999999999999887653 56699999984
No 350
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.74 E-value=0.067 Score=54.22 Aligned_cols=13 Identities=8% Similarity=0.158 Sum_probs=7.2
Q ss_pred HHHHHHcCccccc
Q 001573 133 LEITKRFNIQVNN 145 (1051)
Q Consensus 133 ~~~~~~~~i~~~~ 145 (1051)
..-|..||+.+.+
T Consensus 29 karLrlF~LRPkq 41 (499)
T COG4372 29 KARLRLFGLRPKQ 41 (499)
T ss_pred HHHHhHhccCccc
Confidence 3445566666544
No 351
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=7.8e-05 Score=79.63 Aligned_cols=60 Identities=22% Similarity=0.430 Sum_probs=53.0
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 939 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 939 ~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
.||||||++++++=.| .+++|+++|||++.+||...++.+++++++.++ +.=+|+|-|.+
T Consensus 487 ~LSGGekQrvslaRa~----lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~---~rTvI~IvH~l 546 (591)
T KOG0057|consen 487 MLSGGEKQRVSLARAF----LKDAPILLLDEATSALDSETEREILDMIMDVMS---GRTVIMIVHRL 546 (591)
T ss_pred ccccchHHHHHHHHHH----hcCCCeEEecCcccccchhhHHHHHHHHHHhcC---CCeEEEEEecc
Confidence 3899999999988644 478999999999999999999999999999665 78889999884
No 352
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.73 E-value=5.5e-05 Score=78.37 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=53.4
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.+.++|||.+.+||......+.+.|.+.... .+.-+|++||+.
T Consensus 151 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~tH~~ 213 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQ----QAKVILADEPIASLDPESARIVMDTLRDINQN-DGITVVVTLHQV 213 (262)
T ss_pred cccCHHHHHHHHHHHHHhc----CCCEEEecCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 4589999999999988874 45789999999999999999999988887641 257899999994
No 353
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.73 E-value=5.4e-05 Score=81.48 Aligned_cols=63 Identities=21% Similarity=0.203 Sum_probs=53.1
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. +.++++|||.+++||+.++..+.+.|.+.... .+.-+|++||..
T Consensus 127 ~~LSgGq~qRvalaraL~~----~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tii~vTHd~ 189 (352)
T PRK11144 127 GSLSGGEKQRVAIGRALLT----APELLLMDEPLASLDLPRKRELLPYLERLARE-INIPILYVSHSL 189 (352)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEecCH
Confidence 4589999999999988874 45799999999999999999999988877642 246799999984
No 354
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.73 E-value=7.4e-05 Score=69.47 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=51.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||+++++.+|=.+|+. |- .++|||+.++|||..+.++=++|.++.. ..=+++|||.+
T Consensus 148 ~~LSGGQQQRLcIARalAv~---Pe-VlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnm 208 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVK---PE-VLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNM 208 (253)
T ss_pred cCCChhHHHHHHHHHHHhcC---Cc-EEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCH
Confidence 34899999999999999962 32 5789999999999999998777777664 78899999985
No 355
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.73 E-value=4.4e-05 Score=87.77 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||||.+++||..|+. +.++++|||++++||..+...+++.|.+.+.. +.-+|++||+.
T Consensus 408 ~~LSgGq~qrv~lAral~~----~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tvi~vsHd~ 469 (510)
T PRK09700 408 TELSGGNQQKVLISKWLCC----CPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD--GKVILMVSSEL 469 (510)
T ss_pred ccCChHHHHHHHHHHHHhc----CCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEcCCH
Confidence 4589999999999988873 56899999999999999999999988877642 55699999984
No 356
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.72 E-value=6e-05 Score=78.11 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=52.5
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.++. +.++++|||.+++||+.....+.+.|.+.... .+.=+|++||..
T Consensus 149 ~~LSgGe~qrv~laral~~----~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~ 211 (265)
T TIGR02769 149 RQLSGGQLQRINIARALAV----KPKLIVLDEAVSNLDMVLQAVILELLRKLQQA-FGTAYLFITHDL 211 (265)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCH
Confidence 3589999999999987763 56899999999999999999999988877641 245689999984
No 357
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.72 E-value=0.095 Score=57.62 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=10.4
Q ss_pred HhccCCCHHHHHHHHHHHHHhch
Q 001573 808 FLEMPTTIEELEAAIQDNISQAN 830 (1051)
Q Consensus 808 ~~~~~~~~~~l~~~i~~l~~~~~ 830 (1051)
+.+++..-..+..+|..++..++
T Consensus 312 lselE~~n~~L~~~I~dL~~ql~ 334 (546)
T KOG0977|consen 312 LSELESRNSALEKRIEDLEYQLD 334 (546)
T ss_pred hccccccChhHHHHHHHHHhhhh
Confidence 33333333444555555554443
No 358
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.72 E-value=2.8e-05 Score=73.57 Aligned_cols=29 Identities=38% Similarity=0.368 Sum_probs=23.6
Q ss_pred cceEEecCCc-eeEEEcCCCCChHHHHHHH
Q 001573 35 DHLICKPGSR-LNLVIGPNGSGKSSLVCAI 63 (1051)
Q Consensus 35 ~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai 63 (1051)
.+..+.+.+| +.+|+|||||||||++.+|
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3555666554 8899999999999999987
No 359
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=97.72 E-value=3.9e-05 Score=68.43 Aligned_cols=112 Identities=12% Similarity=0.171 Sum_probs=78.0
Q ss_pred CcccccceeEEeeCCcchHHHHHhhhcccccceEEEechhhHHHHHhhcCCCCcceEeecCCCCCCCCC-CCChHHHHhc
Q 001573 451 KEAYGPVLLEVNVSNRAHANYLEDHVGHYIWKSFITQDAGDRDFLAKNLKPFDVPILNYVSNESSRKEP-FQISEEMRAL 529 (1051)
Q Consensus 451 ~~~~g~~~~~i~~~~~~~~~~ie~~l~~~~~~~~~v~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 529 (1051)
.+++|++++.+.+ ++.|..+|+.++|+.. .+++|++.+++..+++.++....+..++.+.+.....+ .........+
T Consensus 2 ~gv~G~l~dli~v-~~~~~~Ave~~LG~~l-~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~~~~~~~~~~~~ 79 (120)
T PF06470_consen 2 PGVLGRLADLIEV-DPKYEKAVEAALGGRL-QAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRSSASSADQIRPP 79 (120)
T ss_dssp TTEEEEGGGSEEE-SGGGHHHHHHHHGGGG-GSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGTTSCCCGGHHST
T ss_pred CCeeeeHHhceec-CHHHHHHHHHHHHHhh-ceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccccccchhhccCC
Confidence 4789999999999 8999999999999965 68999999999999988874444444443332211001 1111111134
Q ss_pred CcceeecccccC-cHHHHHHHHhhhCCcccccCCCcch
Q 001573 530 GISARLDQVFDA-PHAVKEVLISQFGLDSSYIGSKETD 566 (1051)
Q Consensus 530 g~~~~l~~l~~~-~~~~~~~l~~~~~~~~~~i~~~~~~ 566 (1051)
+...++.+++.+ ++.+.+++...+| .++++.+.+.
T Consensus 80 ~~~~~l~d~i~~~d~~~~~~~~~llg--~~~vv~~l~~ 115 (120)
T PF06470_consen 80 GGAGPLIDLIEFPDEEYRPALEFLLG--DVVVVDDLEE 115 (120)
T ss_dssp TSEEEGGGGEEESCGGGHHHHHHHHT--TEEEESSHHH
T ss_pred cchHHHHHhcccCcHHHHHHHHHHcC--CEEEECCHHH
Confidence 667788899999 8899999999998 5555554443
No 360
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.72 E-value=5.8e-05 Score=74.98 Aligned_cols=79 Identities=15% Similarity=0.087 Sum_probs=57.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC-CCCCCeE
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDL-EYSEACS 1016 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~-~~~~~~~ 1016 (1051)
..+|||||.++++|..|+. +.|+++|||+.+++|+.+...+...|.+.... .+ +|++||.. ..+ .+.+ .
T Consensus 103 ~~lS~G~~qrv~la~al~~----~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~--~~-ii~vsH~~-~~~~~~~d--~ 172 (213)
T PRK15177 103 SEYSVTMKTHLAFAINLLL----PCRLYIADGKLYTGDNATQLRMQAALACQLQQ--KG-LIVLTHNP-RLIKEHCH--A 172 (213)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEECCCCccCCHHHHHHHHHHHHHHhhC--Cc-EEEEECCH-HHHHHhcC--e
Confidence 4589999999999988763 67899999999999999999988877665542 33 78888884 222 2333 3
Q ss_pred EEEEecCCCC
Q 001573 1017 ILNIMNGPWI 1026 (1051)
Q Consensus 1017 v~~~~~g~~~ 1026 (1051)
++++.+|.-+
T Consensus 173 i~~l~~G~i~ 182 (213)
T PRK15177 173 FGVLLHGKIT 182 (213)
T ss_pred eEEEECCeEE
Confidence 4444566544
No 361
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.72 E-value=5e-05 Score=89.32 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=51.8
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
||||||.+++||=.|. .+.|+++|||++++||..+++.+.+.|.+... +.=+|+|||+.
T Consensus 486 LSGGQrQRialARAll----~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~---~~TvIiItHrl 544 (588)
T PRK11174 486 LSVGQAQRLALARALL----QPCQLLLLDEPTASLDAHSEQLVMQALNAASR---RQTTLMVTHQL 544 (588)
T ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC---CCEEEEEecCh
Confidence 8999999999987554 46799999999999999999999998877654 67899999996
No 362
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=6.7e-05 Score=78.35 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=53.4
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||.+++||+.++..+.+.|.+... ..+.-+|++||..
T Consensus 143 ~~LS~G~~qrv~laral~~----~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tillvtH~~ 205 (280)
T PRK13633 143 HLLSGGQKQRVAIAGILAM----RPECIIFDEPTAMLDPSGRREVVNTIKELNK-KYGITIILITHYM 205 (280)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCh
Confidence 4589999999999988874 4589999999999999999999998887754 1367899999985
No 363
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.71 E-value=5.1e-05 Score=86.78 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=53.6
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||||.+++||..++ .+.++++|||+++|||+.+...+.+.|.+.+.. ..+.+|++||..
T Consensus 400 ~~LSgGq~qrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tviivsHd~ 462 (490)
T PRK10938 400 HSLSWGQQRLALIVRALV----KHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE-GETQLLFVSHHA 462 (490)
T ss_pred hhCCHHHHHHHHHHHHHh----cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc-CCcEEEEEecch
Confidence 458999999999998777 367899999999999999999999999887652 235699999984
No 364
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.71 E-value=5.4e-05 Score=87.37 Aligned_cols=64 Identities=22% Similarity=0.266 Sum_probs=54.2
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..||||||.+++||..|+. +.++++|||++++||+.+...++++|.+++.. .+.-+|+|||..
T Consensus 154 ~~~LSgGe~qrv~iAraL~~----~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~ 217 (529)
T PRK15134 154 PHQLSGGERQRVMIAMALLT----RPELLIADEPTTALDVSVQAQILQLLRELQQE-LNMGLLFITHNL 217 (529)
T ss_pred CcccCHHHHHHHHHHHHHhc----CCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh-cCCeEEEEcCcH
Confidence 45589999999999998873 56799999999999999999999988887541 246799999994
No 365
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.71 E-value=9e-05 Score=70.98 Aligned_cols=65 Identities=23% Similarity=0.328 Sum_probs=54.9
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
...||-||+.++-+|=.+-. +| +.+||||..+|||..++..+++.|.+.+...+..++|+|||+.
T Consensus 169 ~~~LS~Ge~rrvLiaRALv~---~P-~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~ 233 (257)
T COG1119 169 FGSLSQGEQRRVLIARALVK---DP-ELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA 233 (257)
T ss_pred hhhcCHhHHHHHHHHHHHhc---CC-CEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch
Confidence 45699999999888765442 22 3689999999999999999999999998867789999999994
No 366
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=7.5e-05 Score=77.76 Aligned_cols=63 Identities=21% Similarity=0.347 Sum_probs=53.6
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||++.+++||-.|+. +.++++|||+++|||+.++..+++.|.+.+. ..++-+|++||..
T Consensus 139 ~~LS~G~~qrv~laral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~~~~tilivsH~~ 201 (279)
T PRK13635 139 HRLSGGQKQRVAIAGVLAL----QPDIIILDEATSMLDPRGRREVLETVRQLKE-QKGITVLSITHDL 201 (279)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEecCH
Confidence 3589999999999988874 4579999999999999999999999988764 2367899999984
No 367
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.70 E-value=7.1e-05 Score=79.42 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=52.1
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 939 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 939 ~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
.||||||.+++||-.++ ...++++|||++++||+.+...+.+.|..... +.-+|+|||..
T Consensus 225 ~LSgGqkqRl~LARAl~----~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~---~~Tii~iTH~l 284 (329)
T PRK14257 225 ALSGGQQQRLCIARAIA----LEPEVLLMDEPTSALDPIATAKIEELILELKK---KYSIIIVTHSM 284 (329)
T ss_pred cCCHHHHHHHHHHHHHH----hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 48999999999998776 46789999999999999999998888877764 57899999995
No 368
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.70 E-value=5.9e-05 Score=86.23 Aligned_cols=63 Identities=13% Similarity=0.146 Sum_probs=53.9
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..||||||.+++||-.|+. +.++++|||++++||+.+...+.+.|.+.+.. +.-+|++||+.
T Consensus 132 ~~~LSgGq~qrv~lA~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tvii~tH~~ 194 (491)
T PRK10982 132 VATLSVSQMQMIEIAKAFSY----NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER--GCGIVYISHKM 194 (491)
T ss_pred hhhCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCH
Confidence 34589999999999988874 56899999999999999999999988887642 66799999984
No 369
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.70 E-value=4.4e-05 Score=81.76 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=53.4
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. +.++++|||.+++||..++..+.+.|.++.. ..+.-+|++||..
T Consensus 135 ~~LSgGq~QRvalArAL~~----~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~g~tii~vTHd~ 197 (353)
T PRK10851 135 AQLSGGQKQRVALARALAV----EPQILLLDEPFGALDAQVRKELRRWLRQLHE-ELKFTSVFVTHDQ 197 (353)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4589999999999987763 4579999999999999999999998888764 2356799999994
No 370
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.70 E-value=6e-05 Score=71.67 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=55.5
Q ss_pred cccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCC
Q 001573 936 SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEA 1014 (1051)
Q Consensus 936 ~~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~ 1014 (1051)
-++.||||.+-++|||=.+|+ +| ++.++||.++|+||.....+-+++.++ ...-..=+|+|||++-+-....+.
T Consensus 142 ~PsELSGGM~KRvaLARAial---dP-ell~~DEPtsGLDPI~a~~~~~LI~~L-~~~lg~T~i~VTHDl~s~~~i~Dr 215 (263)
T COG1127 142 YPSELSGGMRKRVALARAIAL---DP-ELLFLDEPTSGLDPISAGVIDELIREL-NDALGLTVIMVTHDLDSLLTIADR 215 (263)
T ss_pred CchhhcchHHHHHHHHHHHhc---CC-CEEEecCCCCCCCcchHHHHHHHHHHH-HHhhCCEEEEEECChHHHHhhhce
Confidence 367899999999999999996 34 688999999999999987755444443 334577899999996433333333
No 371
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=6.2e-05 Score=86.34 Aligned_cols=62 Identities=18% Similarity=0.305 Sum_probs=53.5
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||||.+++||..|+. +.++++|||++++||+.+...+++.|.+.+.. +.=+|++||..
T Consensus 404 ~~LSgG~kqrv~lA~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tvi~~sHd~ 465 (506)
T PRK13549 404 ARLSGGNQQKAVLAKCLLL----NPKILILDEPTRGIDVGAKYEIYKLINQLVQQ--GVAIIVISSEL 465 (506)
T ss_pred ccCCHHHHHHHHHHHHHhh----CCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC--CCEEEEECCCH
Confidence 4589999999999998873 56899999999999999999999988877653 55699999984
No 372
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.70 E-value=0.0092 Score=58.00 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 320 GVQVQGKYKEMQELRRQEQSRQQRILKAREELAAAELDLQTVPAYEPPHDKIEKLGSQILELGVQANQKRLQKSEKEKIL 399 (1051)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~ 399 (1051)
...+..++.+++.+..+....+.++..+...++..+..+..... ..++..+..++..++.....+..++..+..++
T Consensus 44 ~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~----~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~ 119 (239)
T COG1579 44 NKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD----ERELRALNIEIQIAKERINSLEDELAELMEEI 119 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444444444422221 22333333333333333333333333344444
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 001573 400 NQNKLTLRQCSDRLKDMEDKN 420 (1051)
Q Consensus 400 ~~~~~~~~~~~~~l~~l~~~~ 420 (1051)
..++..+..+..++...+..+
T Consensus 120 ~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 120 EKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443333333
No 373
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=7.2e-05 Score=78.18 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=53.3
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||-.++. +.|+++|||++.|||+.++..+++.|.+.+.. .+.-+|++||+.
T Consensus 139 ~~~LS~G~~qrl~laraL~~----~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvsH~~ 202 (283)
T PRK13636 139 THCLSFGQKKRVAIAGVLVM----EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE-LGLTIIIATHDI 202 (283)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCH
Confidence 34589999999999987763 46899999999999999999999988877641 256788999984
No 374
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=7.6e-05 Score=75.76 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=52.8
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. ..++++|||.+++||..+...+...|.+.+. ..+.-+|++||+.
T Consensus 128 ~~LS~G~~qrl~laral~~----~p~llllDEPt~gLD~~~~~~l~~~l~~~~~-~~~~tili~tH~~ 190 (235)
T cd03299 128 ETLSGGEQQRVAIARALVV----NPKILLLDEPFSALDVRTKEKLREELKKIRK-EFGVTVLHVTHDF 190 (235)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEECCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCH
Confidence 3489999999999987774 4689999999999999999999988887654 2256799999984
No 375
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.69 E-value=8.3e-05 Score=76.92 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=56.5
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeEE
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSI 1017 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~~v 1017 (1051)
..|||||+.++++|..++. +.|+++|||.+.+||+.....+++.+...... +.-+|++||+. ..+...+ .+
T Consensus 158 ~~LSgGq~qrv~lAraL~~----~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~--~~tIiiisH~~-~~~~~~d--~i 228 (282)
T cd03291 158 ITLSGGQRARISLARAVYK----DADLYLLDSPFGYLDVFTEKEIFESCVCKLMA--NKTRILVTSKM-EHLKKAD--KI 228 (282)
T ss_pred CcCCHHHHHHHHHHHHHhc----CCCEEEEECCCccCCHHHHHHHHHHHHHHhhC--CCEEEEEeCCh-HHHHhCC--EE
Confidence 3589999999999987773 56899999999999999998888765443332 57899999884 2233322 34
Q ss_pred EEEecCC
Q 001573 1018 LNIMNGP 1024 (1051)
Q Consensus 1018 ~~~~~g~ 1024 (1051)
+++.+|.
T Consensus 229 ~~l~~G~ 235 (282)
T cd03291 229 LILHEGS 235 (282)
T ss_pred EEEECCE
Confidence 4444564
No 376
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=7.6e-05 Score=77.94 Aligned_cols=63 Identities=16% Similarity=0.314 Sum_probs=54.0
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.++++|||.++|||..++..+.+.|.+.+. ..+..+|++||+.
T Consensus 142 ~~LS~G~~qrv~laral~~----~P~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tvli~tH~~ 204 (282)
T PRK13640 142 ANLSGGQKQRVAIAGILAV----EPKIIILDESTSMLDPAGKEQILKLIRKLKK-KNNLTVISITHDI 204 (282)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCH
Confidence 4589999999999988874 4689999999999999999999998887754 2367999999994
No 377
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.69 E-value=8.2e-05 Score=75.85 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=52.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.|+++|||.+++||..+...+...|.+.... +.=+|++||+.
T Consensus 138 ~~LS~G~~qrv~laral~~----~p~illlDEPts~LD~~~~~~l~~~l~~l~~~--~~tIIiiSHd~ 199 (255)
T cd03236 138 DQLSGGELQRVAIAAALAR----DADFYFFDEPSSYLDIKQRLNAARLIRELAED--DNYVLVVEHDL 199 (255)
T ss_pred hhCCHHHHHHHHHHHHHHh----CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEECCH
Confidence 3489999999999998874 45899999999999999999999888877642 45688888884
No 378
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.69 E-value=5.7e-05 Score=88.73 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=52.3
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
||||||.+++||=.+. .+.|+++|||++++||..+...+++.|..... +.=+|+|||+.
T Consensus 470 LSgGqrQRiaLARall----~~~~illLDEpts~LD~~~~~~i~~~L~~~~~---~~tiIiitH~~ 528 (571)
T TIGR02203 470 LSGGQRQRLAIARALL----KDAPILILDEATSALDNESERLVQAALERLMQ---GRTTLVIAHRL 528 (571)
T ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHHhC---CCEEEEEehhh
Confidence 8999999999997655 46799999999999999999999998887654 68899999995
No 379
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.69 E-value=5.1e-05 Score=82.77 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=61.9
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeE
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACS 1016 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~~ 1016 (1051)
++.||||||.++++|-.||+ .|- +.|+||+.++||+.....++++|.++-. .-+.=|+||||++-.--...+ .
T Consensus 427 P~elSGGQrQRvaIARALa~---~P~-lli~DEp~SaLDvsvqa~VlnLl~~lq~-e~g~t~lfISHDl~vV~~i~d--r 499 (539)
T COG1123 427 PHELSGGQRQRVAIARALAL---EPK-LLILDEPVSALDVSVQAQVLNLLKDLQE-ELGLTYLFISHDLAVVRYIAD--R 499 (539)
T ss_pred chhcCcchhHHHHHHHHHhc---CCC-EEEecCCccccCHHHHHHHHHHHHHHHH-HhCCEEEEEeCCHHHHHhhCc--e
Confidence 45689999999999999996 232 7899999999999999999999988754 346789999999511112223 3
Q ss_pred EEEEecCCCCC
Q 001573 1017 ILNIMNGPWIE 1027 (1051)
Q Consensus 1017 v~~~~~g~~~~ 1027 (1051)
|.+...|--|.
T Consensus 500 v~vm~~G~iVE 510 (539)
T COG1123 500 VAVMYDGRIVE 510 (539)
T ss_pred EEEEECCeEEE
Confidence 33335665554
No 380
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.69 E-value=6.4e-05 Score=86.23 Aligned_cols=63 Identities=13% Similarity=0.269 Sum_probs=54.0
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..||||||.+++||..|+. +.++++|||++++||+.+...+.+.|.+.+.. +.-+|++||..
T Consensus 139 ~~~LSgG~~qrv~iA~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tviiitHd~ 201 (500)
T TIGR02633 139 VGDYGGGQQQLVEIAKALNK----QARLLILDEPSSSLTEKETEILLDIIRDLKAH--GVACVYISHKL 201 (500)
T ss_pred hhhCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCcH
Confidence 34589999999999988874 46799999999999999999999998887642 66799999983
No 381
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.68 E-value=7.6e-05 Score=75.88 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=53.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..|+. +.|+++|||++.+||..+...+.+.|.+... ..+..+|++||..
T Consensus 129 ~~lS~G~~qrl~laral~~----~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tvli~sH~~ 191 (237)
T TIGR00968 129 NQLSGGQRQRVALARALAV----EPQVLLLDEPFGALDAKVRKELRSWLRKLHD-EVHVTTVFVTHDQ 191 (237)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 3489999999999988874 5689999999999999999999998887654 1257899999984
No 382
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.68 E-value=4.6e-05 Score=87.93 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=53.6
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||||.+++||..|+. +.++++|||++++||+.+...+++.|.+.+.. .+.-+|+|||..
T Consensus 424 ~~LSgG~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsHd~ 486 (529)
T PRK15134 424 AEFSGGQRQRIAIARALIL----KPSLIILDEPTSSLDKTVQAQILALLKSLQQK-HQLAYLFISHDL 486 (529)
T ss_pred ccCCHHHHHHHHHHHHHhC----CCCEEEeeCCccccCHHHHHHHHHHHHHHHHh-hCCEEEEEeCCH
Confidence 4589999999999998873 56899999999999999999999999887641 256799999984
No 383
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.68 E-value=8.2e-05 Score=76.44 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=52.5
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. +.++++|||.+.+||..+...+.+.|.+... ...+|++||+.
T Consensus 152 ~~LS~G~~qrl~laral~~----~P~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiilvsh~~ 212 (257)
T PRK14246 152 SQLSGGQQQRLTIARALAL----KPKVLLMDEPTSMIDIVNSQAIEKLITELKN---EIAIVIVSHNP 212 (257)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CcEEEEEECCH
Confidence 3589999999999987773 4578999999999999999999988877643 58999999993
No 384
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.68 E-value=7.1e-05 Score=85.57 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=52.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||||.+++||..|+ .+.++++|||+++|||..++..+++.|.++... +.-+|++||+.
T Consensus 390 ~~LSgGq~qrv~la~al~----~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~--~~tvi~vsHd~ 451 (491)
T PRK10982 390 GSLSGGNQQKVIIGRWLL----TQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK--DKGIIIISSEM 451 (491)
T ss_pred ccCCcHHHHHHHHHHHHh----cCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC--CCEEEEECCCh
Confidence 458999999999998777 357899999999999999999999988776542 56699999984
No 385
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.68 E-value=7.7e-05 Score=73.85 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=53.6
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..||||+|+++++|=.+|. .|. ..+.||.+++|||..+..++++|.++-+ ..+.=+++|||.+
T Consensus 139 P~qLSGGQKQRVaIARALa~---~P~-iLL~DEaTSALDP~TT~sIL~LL~~In~-~lglTIvlITHEm 202 (339)
T COG1135 139 PAQLSGGQKQRVAIARALAN---NPK-ILLCDEATSALDPETTQSILELLKDINR-ELGLTIVLITHEM 202 (339)
T ss_pred chhcCcchhhHHHHHHHHhc---CCC-EEEecCccccCChHHHHHHHHHHHHHHH-HcCCEEEEEechH
Confidence 45699999999999998884 233 4678999999999999999999988654 3577899999995
No 386
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.68 E-value=0.00011 Score=65.45 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=53.2
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCC-ceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCP-FRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPK 1004 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~P-f~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~ 1004 (1051)
+..|||||++++|||=.|| +.| ..+-||.+-+||......+.++|..+.. ...+=.+++||.
T Consensus 144 P~qLSGGEQQRVAiARAfa-----~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr-e~G~TlVlVTHD 206 (228)
T COG4181 144 PAQLSGGEQQRVALARAFA-----GRPDVLFADEPTGNLDRATGDKIADLLFALNR-ERGTTLVLVTHD 206 (228)
T ss_pred ccccCchHHHHHHHHHHhc-----CCCCEEeccCCCCCcchhHHHHHHHHHHHHhh-hcCceEEEEeCC
Confidence 5679999999999998887 355 4678999999999999999999987655 457889999998
No 387
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.68 E-value=5.6e-05 Score=86.56 Aligned_cols=62 Identities=18% Similarity=0.312 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||||.+++||..|+ .+.++++|||++.|||..++..+++.|.+++.. +.=+|++||+.
T Consensus 395 ~~LSgGq~qrl~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tviivsHd~ 456 (501)
T PRK11288 395 MNLSGGNQQKAILGRWLS----EDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ--GVAVLFVSSDL 456 (501)
T ss_pred ccCCHHHHHHHHHHHHHc----cCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC--CCEEEEECCCH
Confidence 458999999999999777 356899999999999999999999988887653 55699999984
No 388
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.67 E-value=6.8e-05 Score=85.89 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=54.0
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..||||||.+++||..|+. +.++++|||++++||+.++..+.+.|.+.... +.=+|+|||+.
T Consensus 138 ~~~LSgGq~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiiiitHd~ 200 (501)
T PRK11288 138 LKYLSIGQRQMVEIAKALAR----NARVIAFDEPTSSLSAREIEQLFRVIRELRAE--GRVILYVSHRM 200 (501)
T ss_pred hhhCCHHHHHHHHHHHHHHh----CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence 34589999999999988774 57899999999999999999999999887642 56799999984
No 389
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.67 E-value=6.7e-05 Score=69.04 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=25.6
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|+-
T Consensus 16 l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 16 LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 34566676655 889999999999999999843
No 390
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.66 E-value=0.00012 Score=72.70 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=50.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHH-HHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLV-RAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~-~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..++. +.++++|||.+++||+.+...++..++ .... .+.=+|++||+.
T Consensus 126 ~~lS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~--~~~tvi~~sh~~ 188 (204)
T cd03250 126 INLSGGQKQRISLARAVYS----DADIYLLDDPLSAVDAHVGRHIFENCILGLLL--NNKTRILVTHQL 188 (204)
T ss_pred CcCCHHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHHhcc--CCCEEEEEeCCH
Confidence 3489999999999988774 568999999999999999988887554 3433 257788999983
No 391
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.65 E-value=8.6e-05 Score=78.31 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=51.5
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||++.++++|..++- ..|+++|||++.|||+..+..+.+.|..... +.-+|++||..
T Consensus 132 ~~LS~G~~qrv~la~al~~----~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~---~~tiii~sH~l 192 (301)
T TIGR03522 132 GQLSKGYRQRVGLAQALIH----DPKVLILDEPTTGLDPNQLVEIRNVIKNIGK---DKTIILSTHIM 192 (301)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHhcC---CCEEEEEcCCH
Confidence 4589999999999987763 4579999999999999999999988877653 57788888884
No 392
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.65 E-value=7.4e-05 Score=73.81 Aligned_cols=64 Identities=17% Similarity=0.280 Sum_probs=55.4
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
++.||||.++++-||=.|| ...|+.+|||.+++|||--+..+-+.|+++-.. -+.=++||||.+
T Consensus 162 p~eLSGGMqQRVGLARAla----~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~-l~KTIvFitHDL 225 (386)
T COG4175 162 PNELSGGMQQRVGLARALA----NDPDILLMDEAFSALDPLIRTEMQDELLELQAK-LKKTIVFITHDL 225 (386)
T ss_pred cccccchHHHHHHHHHHHc----cCCCEEEecCchhhcChHHHHHHHHHHHHHHHH-hCCeEEEEecCH
Confidence 6789999999999998887 467899999999999999999999999887552 355688999995
No 393
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.65 E-value=5.7e-05 Score=80.78 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=53.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. ..++++|||.+++||...+..+...|.+... ..+.-+|++||..
T Consensus 135 ~~LSgGq~QRVaLARaL~~----~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tii~vTHd~ 197 (351)
T PRK11432 135 DQISGGQQQRVALARALIL----KPKVLLFDEPLSNLDANLRRSMREKIRELQQ-QFNITSLYVTHDQ 197 (351)
T ss_pred hhCCHHHHHHHHHHHHHHc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEcCCH
Confidence 4589999999999998874 3578999999999999999998888877654 2357899999994
No 394
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.65 E-value=0.083 Score=52.79 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 844 EHRQRQIEDLSTKQEADKKELKRFL 868 (1051)
Q Consensus 844 ~~~~~~~~~l~~~~~~l~~~~~~l~ 868 (1051)
..+...+..+...+.++...+..+.
T Consensus 224 ~e~~ee~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 224 DELHEEFRNLQNELRELEKKIKALR 248 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 395
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.65 E-value=6.2e-05 Score=80.79 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=53.7
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||++.+++||-.|+ .+.++++|||.+++||+..+..+.+.|.++.. ..+.=+|||||+.
T Consensus 163 ~~LSgGq~QRV~LARALa----~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~-~~~~TII~iTHdl 225 (382)
T TIGR03415 163 GELSGGMQQRVGLARAFA----MDADILLMDEPFSALDPLIRTQLQDELLELQA-KLNKTIIFVSHDL 225 (382)
T ss_pred hhCCHHHHHHHHHHHHHh----cCCCEEEEECCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 358999999999999887 35689999999999999999999999988754 2256799999984
No 396
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.65 E-value=5.5e-05 Score=73.22 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=31.7
Q ss_pred ceEEEEEEeccccccceEEecCCc-eeEEEcCCCCChHHHHHHHHHHh
Q 001573 21 GNIIEIELHNFMTFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1051)
Q Consensus 21 ~~i~~l~l~nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1051)
+.+..+... | -+.+.++.+.+| +.+|+|||||||||++..|.-.+
T Consensus 5 l~~~~l~~~-~-~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 5 LEVRGLSVK-G-AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEeccEEE-e-eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444433 2 455667777666 88999999999999999886443
No 397
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.65 E-value=0.0001 Score=76.76 Aligned_cols=63 Identities=25% Similarity=0.383 Sum_probs=52.9
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||..|+. +.++++|||.+.+||+.+...+.+.|.+.... .+.-+|++||+.
T Consensus 136 ~~LS~Gq~qrl~laraL~~----~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~ 198 (277)
T PRK13652 136 HHLSGGEKKRVAIAGVIAM----EPQVLVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQL 198 (277)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCH
Confidence 3589999999999988874 46899999999999999999999888877541 256789999984
No 398
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.64 E-value=3.2e-05 Score=71.14 Aligned_cols=30 Identities=37% Similarity=0.515 Sum_probs=23.1
Q ss_pred eEEecCCc-eeEEEcCCCCChHHHHHHHHHH
Q 001573 37 LICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1051)
Q Consensus 37 ~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1051)
+++.+.+| +.+|+|||||||||++.+|+-.
T Consensus 4 v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 4 VSLEIKPGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEETTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEEccCCCccccceeeeccc
Confidence 44555443 8999999999999999877543
No 399
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.64 E-value=8.4e-05 Score=85.16 Aligned_cols=63 Identities=17% Similarity=0.281 Sum_probs=54.0
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..||||||.+++||..|+. +.++++|||++++||+.++..+.+.|.+.+.. +.=+|++||+.
T Consensus 138 ~~~LSgG~~qrv~la~aL~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiiivtHd~ 200 (510)
T PRK15439 138 AGSLEVADRQIVEILRGLMR----DSRILILDEPTASLTPAETERLFSRIRELLAQ--GVGIVFISHKL 200 (510)
T ss_pred hhhCCHHHHHHHHHHHHHHc----CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 34589999999999998874 57899999999999999999999999887653 56799999983
No 400
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=8e-05 Score=85.44 Aligned_cols=63 Identities=11% Similarity=0.211 Sum_probs=53.5
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..||||||.+++||..|+. +.++++|||++++||+.++..+++.|.+.... +.=+|++||+.
T Consensus 141 ~~~LSgGqkqrv~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~~tvi~~tH~~ 203 (506)
T PRK13549 141 VGNLGLGQQQLVEIAKALNK----QARLLILDEPTASLTESETAVLLDIIRDLKAH--GIACIYISHKL 203 (506)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCcH
Confidence 34589999999999998873 56799999999999999999999999887642 55689999983
No 401
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.64 E-value=9.5e-05 Score=74.29 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=52.9
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 939 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 939 ~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
.|||||+.+++||..++. +.|+++|||++++||......+.+.|.+... ..+.-+|++||..
T Consensus 141 ~lS~G~~qrv~laral~~----~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sh~~ 202 (220)
T TIGR02982 141 NLSGGQKQRVAIARALVH----RPKLVLADEPTAALDSKSGRDVVELMQKLAR-EQGCTILIVTHDN 202 (220)
T ss_pred hCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCH
Confidence 589999999999987763 4589999999999999999999988887764 2368999999995
No 402
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.63 E-value=0.00013 Score=69.97 Aligned_cols=30 Identities=30% Similarity=0.661 Sum_probs=22.7
Q ss_pred ceEEecCCceeEEEcCCCCChHHHHHHHHHH
Q 001573 36 HLICKPGSRLNLVIGPNGSGKSSLVCAIALA 66 (1051)
Q Consensus 36 ~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~ 66 (1051)
+.+|.++..- +|+|||||||||++.-++--
T Consensus 51 sW~V~~ge~W-~I~G~NGsGKTTLL~ll~~~ 80 (257)
T COG1119 51 SWQVNPGEHW-AIVGPNGAGKTTLLSLLTGE 80 (257)
T ss_pred ceeecCCCcE-EEECCCCCCHHHHHHHHhcc
Confidence 3456666655 99999999999997766543
No 403
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=5.4e-05 Score=75.62 Aligned_cols=32 Identities=31% Similarity=0.565 Sum_probs=27.1
Q ss_pred ccceEEecCCceeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSRLNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+..+.+.+|+.+|+|||||||||++.+|+-
T Consensus 16 l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 16 LDGVSLTLGPGMYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred EcceeEEEcCCcEEEECCCCCCHHHHHHHHhC
Confidence 44666777778999999999999999999974
No 404
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.63 E-value=8.1e-05 Score=85.82 Aligned_cols=64 Identities=17% Similarity=0.295 Sum_probs=53.6
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..||||||.+++||..|+. +.++++|||.+++||+.+...+.+.|.+.+.. .+.-+|+|||..
T Consensus 425 ~~~LSgGq~qrv~laral~~----~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvi~vsHd~ 488 (520)
T TIGR03269 425 PDELSEGERHRVALAQVLIK----EPRIVILDEPTGTMDPITKVDVTHSILKAREE-MEQTFIIVSHDM 488 (520)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEeCCH
Confidence 34589999999999987763 56899999999999999999999988877541 256799999994
No 405
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.63 E-value=7.5e-05 Score=73.94 Aligned_cols=33 Identities=36% Similarity=0.486 Sum_probs=26.1
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1051)
+.+.++.+.+| +.+|+|||||||||++..|+-.
T Consensus 17 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 17 FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred EecceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33556666655 9999999999999999987643
No 406
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.63 E-value=0.033 Score=54.30 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHH
Q 001573 621 ERLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESIEKEDDIN 700 (1051)
Q Consensus 621 ~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~~~~~l~~l~~~~~~~ 700 (1051)
..+-.++..+...+......+..++.++..+...+.+++..+..++.+...+..++..+..+++..+..+.... -.
T Consensus 13 q~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~----~~ 88 (239)
T COG1579 13 QKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK----DE 88 (239)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cH
Confidence 34444455555555555555666666666666666666666666555555555555555555555554442222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001573 701 TALAKLVDQAADLNIQQFKYAIEIKNLLVEIVSCKWSYAEKHMASIEFD 749 (1051)
Q Consensus 701 ~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 749 (1051)
.++..|..++..+..+...+..++..+...+..+...+..+...+...+
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444443333333
No 407
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=0.0001 Score=78.05 Aligned_cols=63 Identities=27% Similarity=0.324 Sum_probs=42.6
Q ss_pred CcccccccccCCCC-CCCCCceEEEEEEeccc--------cccceEEecCCc-eeEEEcCCCCChHHHHHHHHHH
Q 001573 2 DLPRVKRLKVSRGE-DDYMPGNIIEIELHNFM--------TFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1051)
Q Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~i~~l~l~nf~--------~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1051)
|---+||+|+..-. ++ .+..+..+... |. .+.+.++.+.+| +.+|+|||||||||++.+|+-.
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~l~~~nl~~~-y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl 75 (320)
T PRK13631 3 DYFMKKKLKVPNPLSDD-IILRVKNLYCV-FDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred hhhhhcCCCCCCCCCCC-ceEEEEeEEEE-eCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33446788765443 33 44566666653 21 344666666655 8999999999999999999743
No 408
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.62 E-value=6.8e-05 Score=77.16 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=25.4
Q ss_pred cceEEecCCc-eeEEEcCCCCChHHHHHHHHHH
Q 001573 35 DHLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1051)
Q Consensus 35 ~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1051)
.+.++.+.+| +.+|+|||||||||++.+|.-.
T Consensus 20 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 20 DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3555666555 8899999999999999998643
No 409
>PRK13409 putative ATPase RIL; Provisional
Probab=97.62 E-value=9.8e-05 Score=85.04 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=53.3
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||..|+ .+.++++|||++++||+..+..+++.|.++.. +.-+|+|||..
T Consensus 210 ~~~LSgGe~qrv~ia~al~----~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~---g~tvIivsHd~ 271 (590)
T PRK13409 210 ISELSGGELQRVAIAAALL----RDADFYFFDEPTSYLDIRQRLNVARLIRELAE---GKYVLVVEHDL 271 (590)
T ss_pred hhhCCHHHHHHHHHHHHHh----cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC---CCEEEEEeCCH
Confidence 3458999999999998776 35789999999999999999999998887754 66799999984
No 410
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.62 E-value=0.00012 Score=75.57 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=51.2
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.++++|..|+- +.++++|||.+.+||+.+...+++.|..... +.-+|++||+.
T Consensus 155 ~~LS~G~~qrl~laral~~----~p~llllDEPt~gLD~~~~~~l~~~l~~~~~---~~tiii~sh~~ 215 (257)
T cd03288 155 ENFSVGQRQLFCLARAFVR----KSSILIMDEATASIDMATENILQKVVMTAFA---DRTVVTIAHRV 215 (257)
T ss_pred CcCCHHHHHHHHHHHHHhc----CCCEEEEeCCccCCCHHHHHHHHHHHHHhcC---CCEEEEEecCh
Confidence 3489999999999987763 4589999999999999999998888876532 67899999984
No 411
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.62 E-value=6.7e-05 Score=86.92 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=51.0
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..||||||.+++||..++ .+.|+++|||++++||+.+...+.+.|.+.. .+ +|++||+.
T Consensus 441 ~~~LSgGe~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~-viivsHd~ 500 (552)
T TIGR03719 441 VGQLSGGERNRVHLAKTLK----SGGNVLLLDEPTNDLDVETLRALEEALLEFA----GC-AVVISHDR 500 (552)
T ss_pred hhhCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC----Ce-EEEEeCCH
Confidence 3458999999999998776 3678999999999999999999998887652 44 89999984
No 412
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.62 E-value=5.9e-05 Score=88.34 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=54.4
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
++.||||||.+++||..|+. ..+++++||.+++||..+...+++.|.++... .+.=+|+|||..
T Consensus 461 ~~~LSgGqrQRv~iAraL~~----~p~llllDEPts~LD~~~~~~i~~ll~~l~~~-~g~tvi~isHdl 524 (623)
T PRK10261 461 PHEFSGGQRQRICIARALAL----NPKVIIADEAVSALDVSIRGQIINLLLDLQRD-FGIAYLFISHDM 524 (623)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 34589999999999998874 46899999999999999999999999887542 256799999984
No 413
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.62 E-value=0.00011 Score=85.04 Aligned_cols=60 Identities=20% Similarity=0.357 Sum_probs=52.9
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 939 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 939 ~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
.||||+|++++||-.+- .+-|..+|||.+++||+.+++.+.+.|.+... ++=+|+|||.+
T Consensus 609 ~LSGGQrQrlalARaLl----~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~---~~T~I~IaHRl 668 (709)
T COG2274 609 NLSGGQRQRLALARALL----SKPKILLLDEATSALDPETEAIILQNLLQILQ---GRTVIIIAHRL 668 (709)
T ss_pred CCCHHHHHHHHHHHHhc----cCCCEEEEeCcccccCHhHHHHHHHHHHHHhc---CCeEEEEEccc
Confidence 38999999999987554 45678999999999999999999999998875 67899999995
No 414
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.62 E-value=9.9e-05 Score=79.10 Aligned_cols=63 Identities=11% Similarity=0.124 Sum_probs=53.3
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. ..++++|||.+++||...+..+...|.+... ..+.-+|++||..
T Consensus 133 ~~LSgGq~QRvaLARaL~~----~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~~~tvi~vTHd~ 195 (353)
T TIGR03265 133 GQLSGGQQQRVALARALAT----SPGLLLLDEPLSALDARVREHLRTEIRQLQR-RLGVTTIMVTHDQ 195 (353)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEcCCH
Confidence 4589999999999998884 4579999999999999999998888877654 2357899999994
No 415
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.62 E-value=8.1e-05 Score=73.83 Aligned_cols=32 Identities=38% Similarity=0.508 Sum_probs=25.2
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+.++.+.+| +.+|+|||||||||++..|+-
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (207)
T PRK13539 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAG 50 (207)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 33555666554 889999999999999998764
No 416
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=7e-05 Score=70.59 Aligned_cols=34 Identities=41% Similarity=0.575 Sum_probs=26.9
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHHHh
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1051)
|.+..+.|.+| +++|+|||||||||++++|+..+
T Consensus 15 l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34555666654 99999999999999999997544
No 417
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.61 E-value=0.00012 Score=73.39 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=49.8
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHH-HHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQ-LVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~-l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..|||||+.+++||-.|+. +.++++|||.+++||+.+...+++. ++..... .+.-+|++||..
T Consensus 139 ~~LS~G~~qrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~-~~~tii~~sH~~ 202 (218)
T cd03290 139 INLSGGQRQRICVARALYQ----NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD-DKRTLVLVTHKL 202 (218)
T ss_pred CcCCHHHHHHHHHHHHHhh----CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc-CCCEEEEEeCCh
Confidence 4589999999999987774 4589999999999999999988772 4444332 256788899885
No 418
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.61 E-value=7.6e-05 Score=71.41 Aligned_cols=122 Identities=11% Similarity=0.070 Sum_probs=66.2
Q ss_pred ceEEecCCc-eeEEEcCCCCChHHHHHHHHHHhcCCCccc-ccccccccccccCCceeEEEEEEEecCCCceEEEEEEEe
Q 001573 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIALALGGDTQLL-GRATSIGAYVKRGEESGYIKISLRGDTKEEHLTIMRKID 113 (1051)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~-~r~~~~~~~i~~g~~~a~v~i~~~~~~~~~~~~i~R~~~ 113 (1051)
+..+++.+| ...|+|+.||||||+..+|.-..-...... -.|..+..--+.......|.++|.+ +...+.=.+.+.
T Consensus 25 ~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQD--p~~SLnP~~tv~ 102 (252)
T COG1124 25 NVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQD--PYSSLNPRRTVG 102 (252)
T ss_pred ceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecC--CccccCcchhHH
Confidence 455555544 669999999999999998864331111000 0010111111111235678999984 443333333332
Q ss_pred cCCcceEEECCeeecHHHHHHHHHHcCccc---cccccccccchHHHHh
Q 001573 114 TRNKSEWFFNGKVVPKGEVLEITKRFNIQV---NNLTQFLPQDRVCEFA 159 (1051)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~l~Q~~~~~~~ 159 (1051)
..=..-+.++|-.-....+.+++..+|++. +.+..-++.|+...++
T Consensus 103 ~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRia 151 (252)
T COG1124 103 RILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIA 151 (252)
T ss_pred HHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHH
Confidence 211223455666666666999999999983 2222346667665543
No 419
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.61 E-value=0.00012 Score=79.43 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=52.8
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..||||||.+++||-.|+- ..|+++|||.+.+||......++..|.++... +.-+|++||..
T Consensus 137 ~~~LSgGerQRv~IArAL~~----~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~--g~TIIivsHdl 199 (402)
T PRK09536 137 VTSLSGGERQRVLLARALAQ----ATPVLLLDEPTASLDINHQVRTLELVRRLVDD--GKTAVAAIHDL 199 (402)
T ss_pred hhhCCHHHHHHHHHHHHHHc----CCCEEEEECCcccCCHHHHHHHHHHHHHHHhc--CCEEEEEECCH
Confidence 45689999999999988873 45899999999999999999999988887642 56688888883
No 420
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.61 E-value=9.9e-05 Score=84.86 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=53.4
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..||||||.+++||..|+. +.++++|||++++||+.+...+++.|.+.+.. +.=+|++||..
T Consensus 143 ~~~LSgG~~qrv~ia~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tiiivsHd~ 205 (510)
T PRK09700 143 VANLSISHKQMLEIAKTLML----DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE--GTAIVYISHKL 205 (510)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence 34589999999999988874 56899999999999999999999999887652 45688999883
No 421
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.61 E-value=9.7e-05 Score=85.63 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=50.5
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCC
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPK 1004 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~ 1004 (1051)
||||||.++++|=.|. .+.|+++|||++++||+.++..+.+.|.+... +.=+|+|||+
T Consensus 471 LSGGQrQRiaiARall----~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~---~~TvIiItHr 528 (529)
T TIGR02868 471 LSGGERQRLALARALL----ADAPILLLDEPTEHLDAGTESELLEDLLAALS---GKTVVVITHH 528 (529)
T ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC---CCEEEEEecC
Confidence 8999999999987554 58899999999999999999999998876543 6778999997
No 422
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.60 E-value=0.00013 Score=75.26 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=51.7
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 939 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 939 ~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
.|||||+.+++||-.++. +.++++|||.+++||+.....+.+.|.+... ++-+|+|||..
T Consensus 138 ~LS~G~~qrl~LaRall~----~p~illlDEpts~LD~~~~~~l~~~l~~~~~---~~tii~isH~~ 197 (275)
T cd03289 138 VLSHGHKQLMCLARSVLS----KAKILLLDEPSAHLDPITYQVIRKTLKQAFA---DCTVILSEHRI 197 (275)
T ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEECccccCCHHHHHHHHHHHHHhcC---CCEEEEEECCH
Confidence 389999999999987763 5689999999999999999998888876543 67899999995
No 423
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.60 E-value=0.0001 Score=86.61 Aligned_cols=59 Identities=25% Similarity=0.347 Sum_probs=51.8
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
||||||.+++||=.|. .+.|+++|||++++||+.++..+++.|..... +.-+|+|||+.
T Consensus 472 LSgGq~QRialARall----~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~---~~tvIiitHr~ 530 (588)
T PRK13657 472 LSGGERQRLAIARALL----KDPPILILDEATSALDVETEAKVKAALDELMK---GRTTFIIAHRL 530 (588)
T ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc---CCEEEEEEecH
Confidence 8999999999886544 58899999999999999999999998877643 78899999995
No 424
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.60 E-value=0.15 Score=54.44 Aligned_cols=28 Identities=11% Similarity=-0.008 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 847 QRQIEDLSTKQEADKKELKRFLAEIDAL 874 (1051)
Q Consensus 847 ~~~~~~l~~~~~~l~~~~~~l~~~i~~l 874 (1051)
..++......+.+|...+-.|...|..+
T Consensus 275 ~~~~~~~~~ey~~Ll~~K~~Ld~EIatY 302 (312)
T PF00038_consen 275 REEMARQLREYQELLDVKLALDAEIATY 302 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333333334444444444444444444
No 425
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.60 E-value=0.1 Score=55.15 Aligned_cols=68 Identities=13% Similarity=0.282 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 620 IERLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRK 687 (1051)
Q Consensus 620 ~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~i~~~~ 687 (1051)
+.....+++.++..+.....+...++.++.+++.++..+..++.+....+..+...+..+...+..++
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555444444444444
No 426
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.60 E-value=7.8e-05 Score=76.48 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=25.9
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|+-
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34556666655 999999999999999999863
No 427
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.59 E-value=0.00011 Score=87.71 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=54.0
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCC-CceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNC-PFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~-Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||-.|+. .|. .++||||..+|||+.....+++.|.++... +.-+|+|||+.
T Consensus 485 ~~tLSGGE~QRv~LA~aL~~---~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~--G~TVIvVeHd~ 549 (924)
T TIGR00630 485 AGTLSGGEAQRIRLATQIGS---GLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDL--GNTVIVVEHDE 549 (924)
T ss_pred cCcCCHHHHHHHHHHHHHhh---CCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhC--CCEEEEEECCH
Confidence 34589999999999987773 232 589999999999999999999999887653 77899999993
No 428
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.59 E-value=8.6e-05 Score=74.39 Aligned_cols=32 Identities=34% Similarity=0.549 Sum_probs=25.8
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+..+.+.|| +.+|+|||||||||++.+|+-
T Consensus 16 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34555666655 899999999999999999973
No 429
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.59 E-value=0.2 Score=57.10 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 632 ESVDELEESLKSMQTEQRLIEDEAAKLQKEREEII 666 (1051)
Q Consensus 632 ~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~ 666 (1051)
.++..++.+++.+..++..+...+..+...+..+.
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~ 362 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLE 362 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333333333
No 430
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=8.6e-05 Score=75.73 Aligned_cols=30 Identities=37% Similarity=0.475 Sum_probs=24.6
Q ss_pred ceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.++.|.+| +.+|+|||||||||++.+|+-
T Consensus 20 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (239)
T cd03296 20 DVSLDIPSGELVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 555666544 899999999999999999864
No 431
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=97.59 E-value=0.00017 Score=66.22 Aligned_cols=60 Identities=25% Similarity=0.272 Sum_probs=45.4
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 939 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 939 ~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+||||||-++-+|-.||. .|. |.+|||.++|.||-.+.-+-..+..+.. .-==|+||-|.
T Consensus 139 sLSGGERRR~EIARaLa~---~P~-fiLLDEPFAGVDPiaV~dIq~iI~~L~~---rgiGvLITDHN 198 (243)
T COG1137 139 SLSGGERRRVEIARALAA---NPK-FILLDEPFAGVDPIAVIDIQRIIKHLKD---RGIGVLITDHN 198 (243)
T ss_pred ccccchHHHHHHHHHHhc---CCC-EEEecCCccCCCchhHHHHHHHHHHHHh---CCceEEEcccc
Confidence 489999999999999986 343 8999999999999998775443333333 33457888774
No 432
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.58 E-value=0.00011 Score=85.64 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=52.6
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 939 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 939 ~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
.||||||.+++||-.+. .+.|+++|||++++||+.++..+.+.|.+... +.-+|+|||+.
T Consensus 451 ~LSgGq~qRi~lARall----~~~~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tii~itH~~ 510 (569)
T PRK10789 451 MLSGGQKQRISIARALL----LNAEILILDDALSAVDGRTEHQILHNLRQWGE---GRTVIISAHRL 510 (569)
T ss_pred cCCHHHHHHHHHHHHHh----cCCCEEEEECccccCCHHHHHHHHHHHHHHhC---CCEEEEEecch
Confidence 38999999999998665 57899999999999999999999998877653 67799999995
No 433
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.58 E-value=8.3e-05 Score=87.15 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=50.4
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
..||||||.+++||..|+. +.++++|||++.+||......+.+.|.+. . . =+|+|||+.
T Consensus 429 ~~LSgGekqRl~La~~l~~----~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~---g-tvi~vSHd~ 487 (638)
T PRK10636 429 RRFSGGEKARLVLALIVWQ----RPNLLLLDEPTNHLDLDMRQALTEALIDF-E---G-ALVVVSHDR 487 (638)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C---C-eEEEEeCCH
Confidence 4589999999999988873 67899999999999999999999888764 1 4 488999984
No 434
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.58 E-value=0.0001 Score=86.67 Aligned_cols=59 Identities=22% Similarity=0.367 Sum_probs=51.6
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
||||||.+++||=.+. .+.|+++|||++++||+.++..+++.|..... +.=+|+|||..
T Consensus 481 LSGGqrQRi~LARall----~~~~ililDEptsaLD~~t~~~i~~~l~~~~~---~~tvI~VtHr~ 539 (582)
T PRK11176 481 LSGGQRQRIAIARALL----RDSPILILDEATSALDTESERAIQAALDELQK---NRTSLVIAHRL 539 (582)
T ss_pred CCHHHHHHHHHHHHHH----hCCCEEEEECccccCCHHHHHHHHHHHHHHhC---CCEEEEEecch
Confidence 8999999999886544 46799999999999999999999999987654 68899999995
No 435
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.57 E-value=0.00012 Score=68.09 Aligned_cols=82 Identities=17% Similarity=0.314 Sum_probs=60.4
Q ss_pred cccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeEE
Q 001573 938 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSI 1017 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~~v 1017 (1051)
..||||||+ +++|+||. ..|.-+.+|||=+++|||.....+++.=.++-. ..+-=-+.|||.+-.-+.|++..
T Consensus 147 glLSGGQRQ--alsL~MAt--l~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~-~~klTtlMVTHnm~~Al~yG~Rl-- 219 (263)
T COG1101 147 GLLSGGQRQ--ALSLLMAT--LHPPKILLLDEHTAALDPKTAEFVMELTAKIVE-EHKLTTLMVTHNMEDALDYGNRL-- 219 (263)
T ss_pred hhccchHHH--HHHHHHHh--cCCCcEEEecchhhcCCcchHHHHHHHHHHHHH-hcCCceEEEeccHHHHHhhCCeE--
Confidence 348999998 55666675 356668899999999999999988876666544 23556789999987778887763
Q ss_pred EEEecCCCC
Q 001573 1018 LNIMNGPWI 1026 (1051)
Q Consensus 1018 ~~~~~g~~~ 1026 (1051)
++.++|.-|
T Consensus 220 ImLh~G~Iv 228 (263)
T COG1101 220 IMLHSGKIV 228 (263)
T ss_pred EEEeCCeEE
Confidence 334666533
No 436
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.57 E-value=5.9e-05 Score=73.77 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=25.8
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|.-
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44566666655 899999999999999998863
No 437
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.0001 Score=75.66 Aligned_cols=32 Identities=34% Similarity=0.524 Sum_probs=25.9
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|+-
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (255)
T PRK11248 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAG 49 (255)
T ss_pred EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34566666654 899999999999999999873
No 438
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.57 E-value=9.8e-05 Score=73.97 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=25.5
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 18 l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34555666655 889999999999999998863
No 439
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.57 E-value=0.00011 Score=84.04 Aligned_cols=63 Identities=17% Similarity=0.264 Sum_probs=53.3
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..||||||.+++||..|+. +.++++|||.+++||+.+...+.+.|.+.... +.=+|++||+.
T Consensus 139 ~~~LSgG~~qrv~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~~tvii~sHd~ 201 (501)
T PRK10762 139 VGELSIGEQQMVEIAKVLSF----ESKVIIMDEPTDALTDTETESLFRVIRELKSQ--GRGIVYISHRL 201 (501)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 34589999999999988874 57799999999999999999999888887542 55689999883
No 440
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=8.9e-05 Score=80.04 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=53.1
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||+.+++||-.|+. +.++++|||.+++||...+..+...|.+.... .+.-+|++||..
T Consensus 147 ~~~LSgGq~QRVaLARAL~~----~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~ 210 (377)
T PRK11607 147 PHQLSGGQRQRVALARSLAK----RPKLLLLDEPMGALDKKLRDRMQLEVVDILER-VGVTCVMVTHDQ 210 (377)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCH
Confidence 34589999999999998884 34789999999999999999888877776542 357899999994
No 441
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.56 E-value=0.0001 Score=86.29 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=53.8
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..||||||.+++||..|+. ..++++|||.+++||+.....+.++|.++... .+.=+|+|||..
T Consensus 166 ~~~LSgGq~QRv~iA~AL~~----~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~-~g~tvi~itHdl 229 (623)
T PRK10261 166 PHQLSGGMRQRVMIAMALSC----RPAVLIADEPTTALDVTIQAQILQLIKVLQKE-MSMGVIFITHDM 229 (623)
T ss_pred CccCCHHHHHHHHHHHHHhC----CCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCH
Confidence 45689999999999998874 46799999999999999999999988887641 245699999994
No 442
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.56 E-value=0.00011 Score=85.97 Aligned_cols=78 Identities=22% Similarity=0.357 Sum_probs=59.7
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeEEEE
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSILN 1019 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~~v~~ 1019 (1051)
||||||+++++|=.|- .++|++||||.++++|..++..+.+.|..... ++..|+|+|.+ +.+...| +|++
T Consensus 466 LSgGQrQrlaiARall----~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~---~rT~iiIaHRl-sti~~aD--~IiV 535 (567)
T COG1132 466 LSGGQRQRLAIARALL----RNPPILILDEATSALDTETEALIQDALKKLLK---GRTTLIIAHRL-STIKNAD--RIIV 535 (567)
T ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeccccccCHHhHHHHHHHHHHHhc---CCEEEEEeccH-hHHHhCC--EEEE
Confidence 7999999999997554 45699999999999999999999998876664 56888899996 3333322 4554
Q ss_pred EecCCCCC
Q 001573 1020 IMNGPWIE 1027 (1051)
Q Consensus 1020 ~~~g~~~~ 1027 (1051)
.-+|.=+.
T Consensus 536 l~~G~i~e 543 (567)
T COG1132 536 LDNGRIVE 543 (567)
T ss_pred EECCEEEE
Confidence 45665333
No 443
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.56 E-value=0.00011 Score=87.96 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=59.6
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeEEEE
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSILN 1019 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~~v~~ 1019 (1051)
||||||.+++||=.|. .+.|+++|||++++||+.++..+.+.|.+... +.-+|+|||+. +.+...+ .|++
T Consensus 602 LSgGQrQRlalARall----~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~---~~T~iiItHrl-~~~~~~D--~iiv 671 (694)
T TIGR03375 602 LSGGQRQAVALARALL----RDPPILLLDEPTSAMDNRSEERFKDRLKRWLA---GKTLVLVTHRT-SLLDLVD--RIIV 671 (694)
T ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC---CCEEEEEecCH-HHHHhCC--EEEE
Confidence 8999999999997654 56799999999999999999999998877654 78899999995 2233333 3444
Q ss_pred EecCCCC
Q 001573 1020 IMNGPWI 1026 (1051)
Q Consensus 1020 ~~~g~~~ 1026 (1051)
+-+|.-+
T Consensus 672 l~~G~i~ 678 (694)
T TIGR03375 672 MDNGRIV 678 (694)
T ss_pred EeCCEEE
Confidence 3455443
No 444
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.56 E-value=9e-05 Score=69.30 Aligned_cols=22 Identities=41% Similarity=0.735 Sum_probs=19.8
Q ss_pred ceeEEEcCCCCChHHHHHHHHH
Q 001573 44 RLNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 44 ~~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
-+.+|+||.||||||++.+|..
T Consensus 29 evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 3889999999999999998864
No 445
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=0.00011 Score=75.72 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=25.8
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1051)
+.+..+.+.+| +.+|+|||||||||++.+|.-.
T Consensus 19 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 33555665555 8899999999999999998743
No 446
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.55 E-value=0.0001 Score=75.97 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=25.1
Q ss_pred cceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 35 DHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 35 ~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
.+.++.+.+| +.+|+|||||||||++.+|+-
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK11264 20 HGIDLEVKPGEVVAIIGPSGSGKTTLLRCINL 51 (250)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3555666655 889999999999999998863
No 447
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.54 E-value=0.0001 Score=74.38 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=25.1
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIA 64 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~ 64 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (222)
T cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIM 47 (222)
T ss_pred eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence 44556666655 89999999999999999875
No 448
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00011 Score=76.38 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=26.2
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|+-
T Consensus 17 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 44666777666 899999999999999998864
No 449
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.54 E-value=0.00011 Score=75.77 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=27.2
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHHHh
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1051)
+.+..+.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 22 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred eeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 33566677766 89999999999999999997433
No 450
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.54 E-value=0.00012 Score=75.42 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=33.1
Q ss_pred CceEEEEEEeccc---cccceEEecCCc-eeEEEcCCCCChHHHHHHHHHHhc
Q 001573 20 PGNIIEIELHNFM---TFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALALG 68 (1051)
Q Consensus 20 ~~~i~~l~l~nf~---~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L~ 68 (1051)
+..+..|.+. |. -+.+.++.+.+| +.+|+|||||||||++.+|+-.++
T Consensus 3 ~l~~~~v~~~-~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (250)
T PRK14266 3 RIEVENLNTY-FDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMND 54 (250)
T ss_pred EEEEEeEEEE-eCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3445555542 22 234566666655 889999999999999999975443
No 451
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.54 E-value=0.00011 Score=75.89 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=26.2
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1051)
+.+..+.+.+| +.+|+|||||||||++.+|+-.
T Consensus 22 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 33555666555 8999999999999999999754
No 452
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.54 E-value=6.8e-05 Score=75.39 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=26.7
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHHHh
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 20 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 33555666655 99999999999999999997433
No 453
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.53 E-value=0.3 Score=57.92 Aligned_cols=104 Identities=18% Similarity=0.368 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCCc----ceEEEEeccCCcccccceEEEEEecCCCccccccccccCCchHHHHHHHHHHHhcccC-
Q 001573 886 VAQINETFSRNFQEMAV----AGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLT- 960 (1051)
Q Consensus 886 ~~~i~~~F~~~f~~l~~----~g~~~l~~~~~~~~~~gl~i~v~~~~~~~~~~~~~~~lSGGErs~~~lalllal~~~~- 960 (1051)
...+...+..+|..|.. ...+.++ + .++.+ .+..++|. .+++..|||||+..++|||++||+...
T Consensus 504 ~~~le~~~~~~f~~l~~k~~~~~~v~id--~---~~~~~--~l~~~~g~---~~~~~~lS~Ge~~~~~la~~~al~~~~~ 573 (650)
T TIGR03185 504 LQQLEEEITKSFKKLMRKHNLISRLKID--P---ETFAV--SLYDNNGK---HIDKERLSAGERQILAIALLWGLAKVSG 573 (650)
T ss_pred HHHHHHHHHHHHHHHhcccCceeEEEEc--C---CceeE--EEEcCCCC---CcCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34455555556666643 2445554 1 13444 33333343 556777999999999999999998754
Q ss_pred -CCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCC
Q 001573 961 -NCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPK 1004 (1051)
Q Consensus 961 -~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~ 1004 (1051)
+.|| |||++++.+|+.++..++..+...+ ..|+||+||+
T Consensus 574 ~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~----~~QvIils~d 613 (650)
T TIGR03185 574 RRLPV-IIDTPLGRLDSSHRENLVVNYFPKA----SHQVLLLSTD 613 (650)
T ss_pred CCCCE-EEcCCccccChHHHHHHHHHHhhcc----CCeEEEEech
Confidence 4788 6799999999999988876443322 5799999988
No 454
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.00011 Score=75.82 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=24.0
Q ss_pred eEEecCC-ceeEEEcCCCCChHHHHHHHHHH
Q 001573 37 LICKPGS-RLNLVIGPNGSGKSSLVCAIALA 66 (1051)
Q Consensus 37 ~~i~f~~-~~~~I~G~NGsGKSti~~Ai~~~ 66 (1051)
..+++.+ .+.+|+|||||||||+|..|.-.
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4455554 49999999999999999999743
No 455
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=0.00012 Score=72.94 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=26.0
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|.-
T Consensus 16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34566666665 889999999999999999974
No 456
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.53 E-value=2.3e-05 Score=74.88 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=0.0
Q ss_pred ecccccc---ceEEecCCc-eeEEEcCCCCChHHHHHHHH
Q 001573 29 HNFMTFD---HLICKPGSR-LNLVIGPNGSGKSSLVCAIA 64 (1051)
Q Consensus 29 ~nf~~~~---~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~ 64 (1051)
..|+.+. +++++..+| +++|+|||||||||+++-|+
T Consensus 12 k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlit 51 (250)
T COG0411 12 KRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLIT 51 (250)
T ss_pred eecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeec
No 457
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=0.0001 Score=76.62 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=26.4
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|+-.
T Consensus 25 l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34556666655 8899999999999999999643
No 458
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.00012 Score=73.49 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=25.6
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+.++.|.+| +.+|+|||||||||++.+|+-
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34556666654 889999999999999999874
No 459
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.52 E-value=0.00016 Score=84.42 Aligned_cols=60 Identities=25% Similarity=0.381 Sum_probs=52.2
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 939 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 939 ~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
.||||||.+++||-.|. .+.|+++|||++++||+.+++.+.+.|.+... +.=+|+|||+.
T Consensus 471 ~LSgGq~qrl~lARall----~~p~ililDEpts~LD~~~~~~i~~~l~~~~~---~~tvI~isH~~ 530 (585)
T TIGR01192 471 RLSGGERQRLAIARAIL----KNAPILVLDEATSALDVETEARVKNAIDALRK---NRTTFIIAHRL 530 (585)
T ss_pred CCCHHHHHHHHHHHHHh----cCCCEEEEECCccCCCHHHHHHHHHHHHHHhC---CCEEEEEEcCh
Confidence 48999999999998766 47889999999999999999999888876643 67799999995
No 460
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.52 E-value=0.00015 Score=85.45 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=52.1
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 940 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 940 lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
||||||.+.+||=.+. .++|.++|||++++||+.+.+.+.+.|..... +.=+|+|||..
T Consensus 477 LSGGqrQRialARaLl----~~~~illlDEpts~LD~~t~~~i~~~l~~~~~---~~tvIivtHr~ 535 (592)
T PRK10790 477 LSVGQKQLLALARVLV----QTPQILILDEATANIDSGTEQAIQQALAAVRE---HTTLVVIAHRL 535 (592)
T ss_pred CCHHHHHHHHHHHHHH----hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEecch
Confidence 8999999999987554 57799999999999999999999998877654 68899999995
No 461
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.52 E-value=0.0001 Score=75.25 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=25.9
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|+-
T Consensus 16 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred ecCceEEecCCcEEEEECCCCCCHHHHHHHHcC
Confidence 44556666655 889999999999999998864
No 462
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.52 E-value=0.29 Score=55.77 Aligned_cols=38 Identities=24% Similarity=0.516 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 625 SKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKER 662 (1051)
Q Consensus 625 ~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~ 662 (1051)
.++.++..++..+..++..+..++..+...+..+..+.
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~ 365 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEEL 365 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433333333
No 463
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.52 E-value=0.00017 Score=84.11 Aligned_cols=79 Identities=29% Similarity=0.447 Sum_probs=59.7
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeEEE
Q 001573 939 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSIL 1018 (1051)
Q Consensus 939 ~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~~v~ 1018 (1051)
.||||||.+++||=.+. .+.|+++|||.++++|+.++..+.+.|.+... +.-+|+|||.. +.+...+ +|+
T Consensus 475 ~LSgGqrqRialARall----~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~---~~tviiitHr~-~~~~~~d--~i~ 544 (574)
T PRK11160 475 QLSGGEQRRLGIARALL----HDAPLLLLDEPTEGLDAETERQILELLAEHAQ---NKTVLMITHRL-TGLEQFD--RIC 544 (574)
T ss_pred CCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC---CCEEEEEecCh-hHHHhCC--EEE
Confidence 38999999999997655 46799999999999999999999998877653 78899999995 2233222 344
Q ss_pred EEecCCCCC
Q 001573 1019 NIMNGPWIE 1027 (1051)
Q Consensus 1019 ~~~~g~~~~ 1027 (1051)
..-+|.-+.
T Consensus 545 ~l~~G~i~~ 553 (574)
T PRK11160 545 VMDNGQIIE 553 (574)
T ss_pred EEeCCeEEE
Confidence 334554433
No 464
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.52 E-value=0.00014 Score=74.42 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=25.6
Q ss_pred cceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 35 DHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 35 ~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
.+.++.+.+| +.+|+|||||||||++..|.-
T Consensus 29 ~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 29 NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3566666665 999999999999999998874
No 465
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.51 E-value=8e-05 Score=75.02 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=26.6
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|+-.
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33566666666 8999999999999999998743
No 466
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.51 E-value=0.047 Score=49.26 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001573 626 KKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKE 661 (1051)
Q Consensus 626 ~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~ 661 (1051)
+...+......++.++..+.......+.++..+..+
T Consensus 8 E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K 43 (143)
T PF12718_consen 8 EADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKK 43 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444333333333333333
No 467
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.51 E-value=0.00015 Score=71.61 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=25.2
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|+-
T Consensus 17 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 33556666544 889999999999999998863
No 468
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.51 E-value=0.00014 Score=74.24 Aligned_cols=32 Identities=28% Similarity=0.479 Sum_probs=25.5
Q ss_pred cceEEecCCc-eeEEEcCCCCChHHHHHHHHHH
Q 001573 35 DHLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1051)
Q Consensus 35 ~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1051)
.+.++.+.+| +.+|+|||||||||++.+|+-.
T Consensus 20 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 20 KDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3556666554 8899999999999999988743
No 469
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.51 E-value=7.7e-05 Score=74.04 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=25.5
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|+-
T Consensus 16 l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 44555666554 899999999999999998864
No 470
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.50 E-value=0.00031 Score=64.13 Aligned_cols=63 Identities=17% Similarity=0.224 Sum_probs=52.2
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
+..|||||++++++|=.+. ..=+..+-||.+.++||.....++.+|.++-.. ++=+++-||..
T Consensus 135 P~~LSGGEQQRvaIARAiV----~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~--GtTVl~ATHd~ 197 (223)
T COG2884 135 PSQLSGGEQQRVAIARAIV----NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRL--GTTVLMATHDL 197 (223)
T ss_pred ccccCchHHHHHHHHHHHc----cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhc--CcEEEEEeccH
Confidence 4579999999999997554 222367889999999999999999999887653 88999999983
No 471
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.50 E-value=0.00015 Score=71.08 Aligned_cols=31 Identities=35% Similarity=0.388 Sum_probs=24.5
Q ss_pred eEEecCCc-eeEEEcCCCCChHHHHHHHHHHh
Q 001573 37 LICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1051)
Q Consensus 37 ~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1051)
.++++.+| +.+|+|||||||||++.+|+-.+
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44555544 88999999999999999996443
No 472
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.49 E-value=0.0002 Score=78.22 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=54.7
Q ss_pred ccccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001573 937 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005 (1051)
Q Consensus 937 ~~~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1005 (1051)
++.||||+|+++++|..+|. .|. .+|+||.+.+||......+++.|.++.. ..+.=+|+|||.+
T Consensus 152 PheLSGG~rQRv~iAmALa~---~P~-LLIaDEPTTaLDvt~q~qIL~llk~l~~-e~g~a~l~ITHDl 215 (539)
T COG1123 152 PHQLSGGMRQRVMIAMALAL---KPK-LLIADEPTTALDVTTQAQILDLLKDLQR-ELGMAVLFITHDL 215 (539)
T ss_pred CcccCchHHHHHHHHHHHhC---CCC-EEEECCCccccCHHHHHHHHHHHHHHHH-HcCcEEEEEcCCH
Confidence 56799999999999998884 343 6799999999999999999998887764 4688999999994
No 473
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.00013 Score=74.71 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=27.2
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHHHh
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44566666665 99999999999999999997433
No 474
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.00011 Score=74.81 Aligned_cols=32 Identities=31% Similarity=0.410 Sum_probs=26.1
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|+-
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (235)
T cd03261 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG 48 (235)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34566666655 899999999999999999973
No 475
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.49 E-value=0.00015 Score=72.13 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=25.6
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+.++.+.+| +.+|+|||||||||++..|.-
T Consensus 16 l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 33566666655 889999999999999999863
No 476
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.49 E-value=0.00015 Score=72.65 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=26.0
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|+-.
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 19 LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33555666554 8999999999999999998743
No 477
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.48 E-value=8.8e-05 Score=73.71 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=24.5
Q ss_pred ceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.++.|.+| +.+|+|||||||||++..|+-
T Consensus 5 ~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 5 KTDFVMGYHEHIGILAAPGSGKTTLTRLLCG 35 (213)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 455666644 899999999999999988764
No 478
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.48 E-value=0.00011 Score=77.56 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=24.1
Q ss_pred ceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.++.+.+| +.+|+|||||||||++..|+-
T Consensus 25 ~vsl~i~~Gei~gllGpNGaGKSTLl~~l~G 55 (306)
T PRK13537 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLG 55 (306)
T ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence 444555555 899999999999999999863
No 479
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.48 E-value=0.00013 Score=75.08 Aligned_cols=31 Identities=29% Similarity=0.487 Sum_probs=25.3
Q ss_pred ceEEecCCc-eeEEEcCCCCChHHHHHHHHHH
Q 001573 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1051)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1051)
+..+.+.+| +.+|+|||||||||++.+|+-.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 21 SINLPIPARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred cceEEecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 555666655 9999999999999999999643
No 480
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.48 E-value=0.00019 Score=83.26 Aligned_cols=79 Identities=19% Similarity=0.235 Sum_probs=59.3
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeEEE
Q 001573 939 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSIL 1018 (1051)
Q Consensus 939 ~lSGGErs~~~lalllal~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~~~~~v~ 1018 (1051)
.||||||.+++||=.+. .+.|+++|||++++||+.++..+.+.|.+... .+..+|+|||+. ..+...+ .|+
T Consensus 454 ~LSgGq~qrl~lARall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~~tvi~ith~~-~~~~~~d--~i~ 524 (544)
T TIGR01842 454 TLSGGQRQRIALARALY----GDPKLVVLDEPNSNLDEEGEQALANAIKALKA--RGITVVVITHRP-SLLGCVD--KIL 524 (544)
T ss_pred CCCHHHHHHHHHHHHHh----cCCCEEEEeCCccccCHHHHHHHHHHHHHHhh--CCCEEEEEeCCH-HHHHhCC--EEE
Confidence 38999999999987553 56899999999999999999999998877642 267899999995 2222222 444
Q ss_pred EEecCCCC
Q 001573 1019 NIMNGPWI 1026 (1051)
Q Consensus 1019 ~~~~g~~~ 1026 (1051)
+..+|--+
T Consensus 525 ~l~~G~i~ 532 (544)
T TIGR01842 525 VLQDGRIA 532 (544)
T ss_pred EEECCEEE
Confidence 44456443
No 481
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.48 E-value=9e-05 Score=70.28 Aligned_cols=32 Identities=38% Similarity=0.470 Sum_probs=25.5
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|.-
T Consensus 17 l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (166)
T cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG 49 (166)
T ss_pred eecCeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34555666655 899999999999999998863
No 482
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=9.4e-05 Score=70.89 Aligned_cols=31 Identities=29% Similarity=0.534 Sum_probs=25.3
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIA 64 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~ 64 (1051)
+.+..+.+.+| +.+|+|||||||||++..|+
T Consensus 16 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~ 47 (173)
T cd03230 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIIL 47 (173)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 44566666665 88999999999999999875
No 483
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.48 E-value=0.00017 Score=74.43 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=31.4
Q ss_pred ceEEEEEEe--ccccccceEEecCCc-eeEEEcCCCCChHHHHHHHHHH
Q 001573 21 GNIIEIELH--NFMTFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1051)
Q Consensus 21 ~~i~~l~l~--nf~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1051)
..+..+... +..-+.+.++.+.+| +.+|+|||||||||++.+|+-.
T Consensus 8 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 8 IETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred EEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 344444442 222344556666655 9999999999999999998643
No 484
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00014 Score=75.00 Aligned_cols=30 Identities=37% Similarity=0.541 Sum_probs=24.4
Q ss_pred ceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+..+.+.+| +.+|+|||||||||++.+|+-
T Consensus 20 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (255)
T PRK11231 20 DLSLSLPTGKITALIGPNGCGKSTLLKCFAR 50 (255)
T ss_pred eeeeEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 445555555 889999999999999999964
No 485
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.48 E-value=0.00015 Score=73.08 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=25.9
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1051)
+.+..+.+.+| +.+|+|||||||||++.+|+-.
T Consensus 21 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34555666554 8899999999999999998643
No 486
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.48 E-value=0.00019 Score=72.55 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=34.2
Q ss_pred CCceEEEEEEe--c---cccccceEEecCCc-eeEEEcCCCCChHHHHHHHHHHh
Q 001573 19 MPGNIIEIELH--N---FMTFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1051)
Q Consensus 19 ~~~~i~~l~l~--n---f~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1051)
.++.+..+... + ...+.+.++.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34556666654 1 12445666776644 89999999999999999986443
No 487
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00015 Score=73.57 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=26.5
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|+-.
T Consensus 25 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 44556666655 8999999999999999999743
No 488
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.48 E-value=0.00015 Score=74.02 Aligned_cols=33 Identities=30% Similarity=0.496 Sum_probs=26.1
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|.-.
T Consensus 17 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34556666655 8999999999999999988743
No 489
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.48 E-value=0.00015 Score=73.81 Aligned_cols=31 Identities=29% Similarity=0.558 Sum_probs=25.1
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIA 64 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~ 64 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|+
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (236)
T TIGR03864 17 LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLT 48 (236)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34556666654 88999999999999999986
No 490
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.48 E-value=0.00019 Score=74.65 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=25.9
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
|.+.++.|.+| +.+|+|||||||||++.+|.-
T Consensus 41 l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laG 73 (272)
T PRK14236 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNR 73 (272)
T ss_pred eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33556666655 999999999999999999864
No 491
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.47 E-value=0.00015 Score=74.95 Aligned_cols=32 Identities=25% Similarity=0.533 Sum_probs=26.0
Q ss_pred ceEEecCCc-eeEEEcCCCCChHHHHHHHHHHh
Q 001573 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1051)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1051)
+.++.+.+| +.+|+|||||||||++..|+-.+
T Consensus 30 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 30 NINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 555666655 89999999999999999998544
No 492
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=8.6e-05 Score=74.66 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=25.2
Q ss_pred cceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 35 DHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 35 ~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
.+.++.+.+| +.+|+|||||||||++.+|+-
T Consensus 21 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G 52 (220)
T cd03293 21 EDISLSVEEGEFVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred eceeEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3555666655 899999999999999999863
No 493
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.25 Score=53.82 Aligned_cols=9 Identities=22% Similarity=0.213 Sum_probs=3.7
Q ss_pred HHHHhhcCC
Q 001573 493 DFLAKNLKP 501 (1051)
Q Consensus 493 ~~l~~~l~~ 501 (1051)
..+..+++.
T Consensus 128 eEV~~ilK~ 136 (581)
T KOG0995|consen 128 EEVVQILKN 136 (581)
T ss_pred HHHHHHHHh
Confidence 334444443
No 494
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00018 Score=69.33 Aligned_cols=31 Identities=32% Similarity=0.565 Sum_probs=24.6
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIA 64 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~ 64 (1051)
+.+..+.+.+| +.+|+|||||||||++.+|.
T Consensus 16 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~ 47 (178)
T cd03229 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIA 47 (178)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 33455665544 88999999999999999986
No 495
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00015 Score=72.47 Aligned_cols=32 Identities=31% Similarity=0.481 Sum_probs=25.4
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 16 LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34556666654 889999999999999999863
No 496
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.47 E-value=0.00013 Score=74.91 Aligned_cols=32 Identities=34% Similarity=0.484 Sum_probs=25.6
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+..+.+.+| +.+|+|||||||||++.+|.-
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (243)
T TIGR01978 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG 48 (243)
T ss_pred EeccceEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 33555666666 899999999999999999864
No 497
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00024 Score=73.56 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=57.3
Q ss_pred cccCCchHHHHHHHHHHHhc-----ccCCCCceEeeccccCCChHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 001573 938 HHQSGGERSVSTILYLVSLQ-----DLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYS 1012 (1051)
Q Consensus 938 ~~lSGGErs~~~lalllal~-----~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~~~~~ 1012 (1051)
..+|+|++..+++++.+|.. .....|+++|||++++||+.+...++..|.. ..|+|++||+.-.-..+.
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~------~~q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEG------RVQTFVTTTDLADFDALW 255 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhc------CCCEEEEeCCchhccchh
Confidence 34899999999999988731 2346689999999999999999998887753 238888888742211222
Q ss_pred -CCeEEEEEecC
Q 001573 1013 -EACSILNIMNG 1023 (1051)
Q Consensus 1013 -~~~~v~~~~~g 1023 (1051)
+..+++.+.+|
T Consensus 256 ~~~~~i~~l~~g 267 (270)
T cd03242 256 LRRAQIFRVDAG 267 (270)
T ss_pred ccCccEEEEeCc
Confidence 34456655555
No 498
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.47 E-value=0.00019 Score=74.51 Aligned_cols=46 Identities=17% Similarity=0.428 Sum_probs=31.5
Q ss_pred CceEEEEEEeccc---cccceEEecCCc-eeEEEcCCCCChHHHHHHHHHH
Q 001573 20 PGNIIEIELHNFM---TFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1051)
Q Consensus 20 ~~~i~~l~l~nf~---~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1051)
+..+..|... |. .+.+.++.+.+| +.+|+|||||||||++..|+-.
T Consensus 13 ~l~i~nl~~~-~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 13 IISLQNVTIS-YGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred eEEEEeEEEE-ECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3445555432 32 233556666655 8899999999999999998743
No 499
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.46 E-value=0.00018 Score=67.92 Aligned_cols=31 Identities=26% Similarity=0.467 Sum_probs=24.3
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIA 64 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~ 64 (1051)
+.+.++.+.|| +.+|+|||||||||++..|.
T Consensus 16 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 47 (163)
T cd03216 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILS 47 (163)
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 34555555554 88999999999999999885
No 500
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.46 E-value=0.00012 Score=73.06 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=26.1
Q ss_pred ccceEEecCCc-eeEEEcCCCCChHHHHHHHHH
Q 001573 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1051)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1051)
+.+.++.+.+| +.+|+|||||||||++.+|+-
T Consensus 17 l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 44666666655 889999999999999999863
Done!