Query 001573
Match_columns 1051
No_of_seqs 270 out of 2462
Neff 10.9
Searched_HMMs 29240
Date Tue Mar 26 15:51:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001573.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_873-876//hhsearch_pdb/001573hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ad8_A DNA repair protein RECN 1.0 1 1 207.9 39.7 139 19-175 36-175 (517)
2 3auy_A DNA double-strand break 1.0 1 1 201.7 24.5 151 19-176 1-158 (371)
3 3qks_A DNA double-strand break 1.0 1 1 198.6 20.1 162 21-188 1-175 (203)
4 1w1w_A Structural maintenance 1.0 1 1 198.1 18.5 155 20-177 1-176 (430)
5 3kta_A Chromosome segregation 1.0 1 1 197.7 19.6 164 20-184 1-177 (182)
6 1e69_A Chromosome segregation 1.0 1 1 180.3 16.3 150 21-173 1-157 (322)
7 1f2t_A RAD50 ABC-ATPase; DNA d 1.0 1 1 173.5 13.8 136 21-161 1-149 (149)
8 3qkt_A DNA double-strand break 1.0 1 1 172.3 17.0 155 21-180 1-167 (339)
9 3qf7_A RAD50; ABC-ATPase, ATPa 1.0 1 1 161.3 17.4 151 21-176 1-166 (365)
10 2o5v_A DNA replication and rep 1.0 1 1 152.7 16.9 139 19-175 2-140 (359)
No 1
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=1.00 E-value=1 Score=207.88 Aligned_cols=139 Identities=23% Similarity=0.297 Sum_probs=113.4
Q ss_pred CCCEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE-
Q ss_conf 8713899997403332106781599615998489998479999999983598755554343100000387246999999-
Q 001573 19 MPGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISL- 97 (1051)
Q Consensus 19 ~~m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~- 97 (1051)
+.|+|.+|+|.||++|.++.|+|++|+|+|+|+||||||||++||.|++||.+ ..++|++|...+.|+++|
T Consensus 36 ~~M~l~~L~i~nf~~~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~~llg~r~--------~~~~i~~g~~~a~v~~~f~ 107 (517)
T 4ad8_A 36 TGPRLSRLEIRNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLGGRA--------NHDLIRSGEKELLVTGFWG 107 (517)
T ss_dssp --CCCCEEEEESBTTBSCEEEECCCSEEEEEESHHHHHHHHTHHHHHHTCSCC--------CGGGBCTTCSEEEEEEEC-
T ss_pred CCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCC--------HHHHHCCCCCCEEEEEEEE
T ss_conf 56664236001616630179953898079985999878999999998736776--------8998218997389999998
Q ss_pred EECCCCCEEEEEEEEECCCCCEEEECCEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 825998528999998539960188879340587899999882864465323334210789861590678999998629
Q 001573 98 RGDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175 (1051)
Q Consensus 98 ~~~~~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~~~g 175 (1051)
... ++..+.|.|.+..+|.+.|++||.+++..++.++...+ ..+.+|... +...+|..++.++....+
T Consensus 108 ~~~-~~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~~~l-------i~i~~q~~~--~~l~~~~~rr~~LD~~~~ 175 (517)
T 4ad8_A 108 DGD-ESEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGR-------LTIHWQHSA--VSLLSPANQRGLLDRRVT 175 (517)
T ss_dssp --------CEEEEEEETTSCCEEESSSSBCCHHHHHHHHTTT-------EEEESGGGG--GTTTSHHHHHHHHHTSSH
T ss_pred ECC-CCCEEEEEEEEECCCCCEEEECCEECCHHHHHHHHHHH-------EEEECCCHH--HHCCCHHHHHHHHHHHHC
T ss_conf 548-99769999999638883899999988799999996310-------688688517--761798999999998747
No 2
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=1.00 E-value=1 Score=201.73 Aligned_cols=151 Identities=25% Similarity=0.382 Sum_probs=126.0
Q ss_pred CCCEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 87138999974033321067815996159984899984799999999835987555543431000003872469999998
Q 001573 19 MPGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLR 98 (1051)
Q Consensus 19 ~~m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~ 98 (1051)
|||+|.+|+|.||++|.+++|+|++|+|+|+||||||||||+|||+|+|+|.+ |+....++|++|...+.|+++|.
T Consensus 1 m~M~l~~L~l~nFr~~~~~~i~f~~gl~vi~G~NGaGKT~ileAI~~~l~g~~----r~~~~~~~ir~g~~~~~V~~~f~ 76 (371)
T 3auy_A 1 MSMILKEIRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALFGAG----SNFNYDTIITKGKKSVYVELDFE 76 (371)
T ss_dssp CCEEEEEEEEEEETTEEEEEEECCSEEEEEEECTTSSHHHHHHHHHHHHHCCC-----CCCTTTTBCTTCSEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCC----CCCCHHHHCCCCCCCEEEEEEEE
T ss_conf 98478699998611536659836998499999999988999999999982998----75556765118998389999999
Q ss_pred ECCCCCEEEEEEEEECCCC--CEEEECCEEECH--HHHHHHHH-HCCCCCCCC--CCCCCCCHHHHHHCCCCHHHHHHHH
Q ss_conf 2599852899999853996--018887934058--78999998-828644653--2333421078986159067899999
Q 001573 99 GDTKEEHLTIMRKIDTRNK--SEWFFNGKVVPK--GEVLEITK-RFNIQVNNL--TQFLPQDRVCEFAKLSPVKLLEETE 171 (1051)
Q Consensus 99 ~~~~~~~~~i~R~~~~~~~--~~~~~~~~~~~~--~~~~~~~~-~~~i~~~~~--~~~l~q~~~~~~~~~~~~~~~~~~~ 171 (1051)
. ++..+.|.|.+ .+|. ..+++||..++. .++...+. .+|++.+.+ +.+++||++..|...+|.+++.++.
T Consensus 77 ~--~~~~~~i~r~~-~~g~~~~~~~~ng~~~~~~~~~~~~~l~~i~gl~~~~f~~~v~~~qg~~~~~~~~~~~~Rr~~ld 153 (371)
T 3auy_A 77 V--NGNNYKIIREY-DSGRGGAKLYKNGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLKPSEKLETVA 153 (371)
T ss_dssp E--TTEEEEEEEEE-ETTEEEEEEEETTEEEECSHHHHHHHHHHHHCSCHHHHHHHHEECTTHHHHHHHSCHHHHHHHHH
T ss_pred E--CCEEEEEEEEE-CCCCCCEEEEECCEEECCCHHHHHHHHHHHHCCCHHHHCCEEEECCCCHHHHHHCCHHHHHHHHH
T ss_conf 8--99999999997-68998539998998611647899999999869598994743266173079987359899999999
Q ss_pred HHHCC
Q ss_conf 86299
Q 001573 172 KAVGD 176 (1051)
Q Consensus 172 ~~~g~ 176 (1051)
..+|.
T Consensus 154 ~~~~~ 158 (371)
T 3auy_A 154 KLLGI 158 (371)
T ss_dssp HHHTH
T ss_pred HHHCH
T ss_conf 98694
No 3
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=1.00 E-value=1 Score=198.55 Aligned_cols=162 Identities=18% Similarity=0.224 Sum_probs=132.3
Q ss_pred CEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
Q ss_conf 13899997403332106781599615998489998479999999983598755554343100000387246999999825
Q 001573 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1051)
Q Consensus 21 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1051)
|+|.+|+|.||++|.+.+|+|++|+|+|+||||||||||++||+|+|||.+ ..|+....++++.|...+.|+++|.+
T Consensus 1 M~i~~l~i~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~l~g~~--~~r~~~~~~~i~~~~~~~~v~l~f~~- 77 (203)
T 3qks_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPL--RIKDIKKDEFTKVGARDTYIDLIFEK- 77 (203)
T ss_dssp CEEEEEEEESBTTBSSEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHTTS--CCTTCCHHHHHTSCSSCEEEEEEEEE-
T ss_pred CEEEEEEEECCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCC--CCCCCCCHHHHCCCCCCEEEEEEEEE-
T ss_conf 979999998876715629981898189992899988999999999964985--56566612333068984899999998-
Q ss_pred CCCCEEEEEEEEECCC---CCE---EEECCEE--E---CHHHHHHHHHHCCCCCCC--CCCCCCCCHHHHHHCCCCHHHH
Q ss_conf 9985289999985399---601---8887934--0---587899999882864465--3233342107898615906789
Q 001573 101 TKEEHLTIMRKIDTRN---KSE---WFFNGKV--V---PKGEVLEITKRFNIQVNN--LTQFLPQDRVCEFAKLSPVKLL 167 (1051)
Q Consensus 101 ~~~~~~~i~R~~~~~~---~~~---~~~~~~~--~---~~~~~~~~~~~~~i~~~~--~~~~l~q~~~~~~~~~~~~~~~ 167 (1051)
++..|+|.|.+.+++ .+. |..+|.. + ..+++...+..+ ++.+. .+++++||.+..|+.++ .++.
T Consensus 78 -~~~~~~i~R~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~i~~l-l~~~~f~~~~~l~Qg~~~~~l~~~-~er~ 154 (203)
T 3qks_A 78 -DGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKL-IPYNIFLNAIYIRQGQIDAILESD-EARE 154 (203)
T ss_dssp -TTEEEEEEEEEECSSSCEEEEEEEEEETTEEEESSCSSHHHHHHHHHHH-SCHHHHHHTTEECTTHHHHHHHCH-HHHH
T ss_pred -CCEEEEEEEEEECCCCCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHH-CCHHHHHEEEEECCCCHHHHHHCC-HHHH
T ss_conf -9999999999976898776535999728966550347768999999997-398781278899587578787493-9999
Q ss_pred HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999986299990899999999
Q 001573 168 EETEKAVGDPQLPVQHCALVE 188 (1051)
Q Consensus 168 ~~~~~~~g~~~l~~~~~~l~~ 188 (1051)
.+|+.++|+..|....+.+.+
T Consensus 155 ~~l~~i~g~~~~~~~~~~l~~ 175 (203)
T 3qks_A 155 KVVREVLNLDKFETAYKKLSE 175 (203)
T ss_dssp HHHHHHTCCCTTHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999797899999999999
No 4
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=1.00 E-value=1 Score=198.07 Aligned_cols=155 Identities=28% Similarity=0.408 Sum_probs=134.3
Q ss_pred CCEEEEEEEECCCCCCCE-EEECC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---------
Q ss_conf 713899997403332106-78159-9615998489998479999999983598755554343100000387---------
Q 001573 20 PGNIIEIELHNFMTFDHL-ICKPG-SRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGE--------- 88 (1051)
Q Consensus 20 ~m~i~~l~l~nf~~~~~~-~i~f~-~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~--------- 88 (1051)
||+|.+|.+.||++|... .++|+ +++|+|+||||||||||++||+|++++.+. ..|+....++|++|.
T Consensus 1 mm~i~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~-~~R~~~~~~lI~~g~~~~~~~~~~ 79 (430)
T 1w1w_A 1 MGRLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN-HLRSNILKDLIYRGVLNDENSDDY 79 (430)
T ss_dssp -CCEEEEEEESCSSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC----------CGGGSCCC----------
T ss_pred CCEEEEEEEECEEEECCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 9715899995889989940577569978999999988899999999845342434-401445899996488664025872
Q ss_pred ----------CEEEEEEEEEECCCCCEEEEEEEEECCCCCEEEECCEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf ----------2469999998259985289999985399601888793405878999998828644653233342107898
Q 001573 89 ----------ESGYIKISLRGDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEF 158 (1051)
Q Consensus 89 ----------~~a~v~i~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~ 158 (1051)
..++|.+.|.. ++..+.|.|.+..++.+.|++||..++..++..++...++...++.++++||.+..|
T Consensus 80 ~~~~~~~~~~~~~~v~~~~~~--~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~~~~l 157 (430)
T 1w1w_A 80 DNEGAASSNPQSAYVKAFYQK--GNKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQI 157 (430)
T ss_dssp ---------CCEEEEEEEEEE--TTEEEEEEEEEETTSCEEEEETTEEECHHHHHHHHHHTTCCTTTCTTEECTTCTTHH
T ss_pred CCCCCCCCCCCCCCCEEEECC--CCCEEEEEEEEECCCCEEEEECCEECCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHH
T ss_conf 266665677631111034216--882799999996699569999998864999999998579587872004665759999
Q ss_pred HCCCCHHHHHHHHHHHCCC
Q ss_conf 6159067899999862999
Q 001573 159 AKLSPVKLLEETEKAVGDP 177 (1051)
Q Consensus 159 ~~~~~~~~~~~~~~~~g~~ 177 (1051)
+.++|.+++.+++.++|..
T Consensus 158 ~~~~p~eRr~~ld~~~g~~ 176 (430)
T 1w1w_A 158 AAQSPVELSRMFEEVSGSI 176 (430)
T ss_dssp HHSCHHHHHHTC-------
T ss_pred HHCCHHHHHHHHHHHHCCH
T ss_conf 8589999999999983964
No 5
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=1.00 E-value=1 Score=197.65 Aligned_cols=164 Identities=23% Similarity=0.383 Sum_probs=146.5
Q ss_pred CCEEEEEEEECCCCC--CCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC------CEE
Q ss_conf 713899997403332--106781599615998489998479999999983598755554343100000387------246
Q 001573 20 PGNIIEIELHNFMTF--DHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGE------ESG 91 (1051)
Q Consensus 20 ~m~i~~l~l~nf~~~--~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~------~~a 91 (1051)
||+|.+|+|.||++| .+++++|++|+|+|+||||||||||++||.|+|++.+....|+....++++.|. ..+
T Consensus 1 mM~i~~l~i~nf~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (182)
T 3kta_A 1 MPYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYA 80 (182)
T ss_dssp -CEEEEEEEESBGGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCE
T ss_pred CCEEEEEEEECEEEECCCCEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHEEECCCCCCCCCCEE
T ss_conf 95689999958486537628996589828999999997899999999997687422345432000366466667777359
Q ss_pred EEEEEEEECC-----CCCEEEEEEEEECCCCCEEEECCEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCHHH
Q ss_conf 9999998259-----98528999998539960188879340587899999882864465323334210789861590678
Q 001573 92 YIKISLRGDT-----KEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKL 166 (1051)
Q Consensus 92 ~v~i~~~~~~-----~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~~ 166 (1051)
.|.++|.+.. ++..++|.|.+..++...|++||..++..++.+++..++++.+++ .+++||++..|+.++|.++
T Consensus 81 ~v~~~f~~~~~~~~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~-~~~~qg~~~~l~~~~~~~r 159 (182)
T 3kta_A 81 EVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGY-NIVLQGDITKFIKMSPLER 159 (182)
T ss_dssp EEEEEEECTTCCSSSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCT-TEECTTCTTHHHHSCHHHH
T ss_pred EEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCEECCHHHHHHHHHHCCCCCCCC-EEEECCCHHHHHHCCHHHH
T ss_conf 999999578765456786899999999589579999995868999999999859997887-7997521889982799999
Q ss_pred HHHHHHHHCCCCCHHHHH
Q ss_conf 999998629999089999
Q 001573 167 LEETEKAVGDPQLPVQHC 184 (1051)
Q Consensus 167 ~~~~~~~~g~~~l~~~~~ 184 (1051)
+.++..++|...|.+..+
T Consensus 160 ~~~ld~~~g~~~~~~~~~ 177 (182)
T 3kta_A 160 RLLIDDISGIAEYDSKKE 177 (182)
T ss_dssp HHHHHHHHTC--------
T ss_pred HHHHHHHHCHHHHHHHHH
T ss_conf 999999878588999999
No 6
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=1.00 E-value=1 Score=180.32 Aligned_cols=150 Identities=22% Similarity=0.371 Sum_probs=130.8
Q ss_pred CEEEEEEEECCCCCC-CEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC------CEEEE
Q ss_conf 138999974033321-06781599615998489998479999999983598755554343100000387------24699
Q 001573 21 GNIIEIELHNFMTFD-HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGE------ESGYI 93 (1051)
Q Consensus 21 m~i~~l~l~nf~~~~-~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~------~~a~v 93 (1051)
|+|++|+|.||++|. .+.|+|++|+|+|+||||||||||++||.|+||+.+....|+....++|+.|. ..+.|
T Consensus 1 M~l~~L~i~nfr~~~~~~~l~~~~g~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v 80 (322)
T 1e69_A 1 MRLKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYV 80 (322)
T ss_dssp CEEEEEEEESBTTBCSCEEEECCSSEEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEE
T ss_pred CEEEEEEEECCEEECCCEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHCCCCCHHHHHCCCCCCCCCCCEEEE
T ss_conf 95759999493521697688569992899999999679999999998688840000202588760267667888861899
Q ss_pred EEEEEECCCCCEEEEEEEEECCCCCEEEECCEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99998259985289999985399601888793405878999998828644653233342107898615906789999986
Q 001573 94 KISLRGDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKA 173 (1051)
Q Consensus 94 ~i~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~~ 173 (1051)
+++|.+ ++..+.|.|.+..++...|++||.+++..++...+...++..+.+ .+++||.+.+++.++|.+++.+++..
T Consensus 81 ~~~f~~--~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~-~lv~qg~i~~~~~~~p~~rr~~ld~~ 157 (322)
T 1e69_A 81 ELVFEE--NGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFY-SIVGQGQIDRIVNASPEELRLESSKH 157 (322)
T ss_dssp EEEEES--SSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCC-SEEEHHHHHHHHTC------------
T ss_pred EEEEEE--CCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHE-EEEEHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 999993--992999999998699638999990834999999999839980460-66745649999866688899999986
No 7
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=1.00 E-value=1 Score=173.53 Aligned_cols=136 Identities=22% Similarity=0.323 Sum_probs=110.8
Q ss_pred CEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
Q ss_conf 13899997403332106781599615998489998479999999983598755554343100000387246999999825
Q 001573 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1051)
Q Consensus 21 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1051)
|+|.+|+|.||++|.+.+++|++|+|+|+||||||||||++||+|+|+|... .|+....+++++|...+.|+++|.+
T Consensus 1 M~i~~l~i~nf~~~~~~~i~f~~g~~~I~G~NGsGKStil~Ai~~~l~g~~~--~r~~~~~~~~~~~~~~~~v~~~f~~- 77 (149)
T 1f2t_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEK- 77 (149)
T ss_dssp CEEEEEEEESBTTBSSEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHCSSC--CTTSSCCCSCSTTCCCEEEEEEEEE-
T ss_pred CEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCHHHHEECCCCCEEEEEEEEE-
T ss_conf 9787999968534866599728976999988999889999999999759854--4558878850069974899999998-
Q ss_pred CCCCEEEEEEEEECCC-CCEEE--EC--CE---EE--CH-HHHHHHHHHCCCCCCCCC--CCCCCCHHHHHHCC
Q ss_conf 9985289999985399-60188--87--93---40--58-789999988286446532--33342107898615
Q 001573 101 TKEEHLTIMRKIDTRN-KSEWF--FN--GK---VV--PK-GEVLEITKRFNIQVNNLT--QFLPQDRVCEFAKL 161 (1051)
Q Consensus 101 ~~~~~~~i~R~~~~~~-~~~~~--~~--~~---~~--~~-~~~~~~~~~~~i~~~~~~--~~l~q~~~~~~~~~ 161 (1051)
++..|.|.|.+.+++ .+.++ ++ |. .+ +. +++.+.+..+ ++.+.|. .+++||++..|+.+
T Consensus 78 -~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l-l~~~~f~~~~~i~QG~~~~~l~~ 149 (149)
T 1f2t_A 78 -DGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKL-IPYNIFLNAIYIRQGQIDAILES 149 (149)
T ss_dssp -TTEEEEEEEEECCC----EEEEEEEEETTEEEESSCSSHHHHHHHHHHH-SCHHHHHHHTEECTTHHHHHTCC
T ss_pred -CCEEEEEEEEECCCCCCEEEEEEECCCCCCEEECCCCCHHHHHHHHHHH-CCHHHHHHEEEECCCCHHHHHHC
T ss_conf -9999999999867888438999752689733783447668999999997-69988531689807579879539
No 8
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=1.00 E-value=1 Score=172.32 Aligned_cols=155 Identities=16% Similarity=0.217 Sum_probs=117.6
Q ss_pred CEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
Q ss_conf 13899997403332106781599615998489998479999999983598755554343100000387246999999825
Q 001573 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1051)
Q Consensus 21 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1051)
|+|++|+|.||++|.+.+++|++|+|+|+||||||||||++||+|+|++.... ++....++++.|...++|.++|..
T Consensus 1 M~i~~l~l~nF~~~~~~~i~f~~~~~~i~G~NGsGKS~lleAi~~~l~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~- 77 (339)
T 3qkt_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRI--KDIKKDEFTKVGARDTYIDLIFEK- 77 (339)
T ss_dssp CEEEEEEEEEETTEEEEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHCSCCC--TTCCHHHHBCTTCSEEEEEEEEEE-
T ss_pred CEEEEEEEECCCCCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC--CCCCHHHHHCCCCCEEEEEEEEEE-
T ss_conf 96799999762175571772799838999999997899999999996487566--767777886178980899999998-
Q ss_pred CCCCEEEEEEEEECCC---CCEEE---ECCEEE-----CHHHHHHHHH-HCCCCCCCCCCCCCCCHHHHHHCCCCHHHHH
Q ss_conf 9985289999985399---60188---879340-----5878999998-8286446532333421078986159067899
Q 001573 101 TKEEHLTIMRKIDTRN---KSEWF---FNGKVV-----PKGEVLEITK-RFNIQVNNLTQFLPQDRVCEFAKLSPVKLLE 168 (1051)
Q Consensus 101 ~~~~~~~i~R~~~~~~---~~~~~---~~~~~~-----~~~~~~~~~~-~~~i~~~~~~~~l~q~~~~~~~~~~~~~~~~ 168 (1051)
++..|.|.|++.++. ...+. +++... ...++...+. .++.+......+++||.+..|+. +|.++..
T Consensus 78 -~~~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l~~~~~f~~~~~i~Qg~~~~il~-~~~eR~~ 155 (339)
T 3qkt_A 78 -DGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILE-SDEAREK 155 (339)
T ss_dssp -TTEEEEEEEEEETTCTTSCEEEEEEEETTEEEESSCSSHHHHHHHHHHHSCHHHHHHHTEECTTCTTGGGS-CTTHHHH
T ss_pred -CCEEEEEEEEEECCCCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHHHCCHHHHHHHEEECCHHHHHHHH-CHHHHHH
T ss_conf -99999999998547778864378994288255423331678999999863978765425861212999872-8699999
Q ss_pred HHHHHHCCCCCH
Q ss_conf 999862999908
Q 001573 169 ETEKAVGDPQLP 180 (1051)
Q Consensus 169 ~~~~~~g~~~l~ 180 (1051)
+++.++|...|.
T Consensus 156 ll~~l~~~~~~~ 167 (339)
T 3qkt_A 156 VVREVLNLDKFE 167 (339)
T ss_dssp HHHHHHTTCTTH
T ss_pred HHHHHHCCHHHH
T ss_conf 999996821689
No 9
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=1.00 E-value=1 Score=161.31 Aligned_cols=151 Identities=23% Similarity=0.269 Sum_probs=114.5
Q ss_pred CEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCCEEEEEEEEE
Q ss_conf 1389999740333210678159961599848999847999999998359875555434310--00003872469999998
Q 001573 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIG--AYVKRGEESGYIKISLR 98 (1051)
Q Consensus 21 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~--~~i~~g~~~a~v~i~~~ 98 (1051)
|++.+|++.||++|.+++|+|++|+++|+||||||||||++||+|+|+|..... .... ..++.+...+.|.++|.
T Consensus 1 M~~~~l~~~~f~~~~~~~i~~~~g~~~i~G~NGaGKTTll~ai~~al~g~~~r~---~~~~~~~~~~~~~~~~~v~~~f~ 77 (365)
T 3qf7_A 1 MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRY---PNSYDYVNRNAVDGTARLVFQFE 77 (365)
T ss_dssp CEEEEEEEEEETTEEEEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHSCCSSC---SSGGGGBCTTCTTCEEEEEEEEE
T ss_pred CEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC---CCCCHHHHCCCCCCCEEEEEEEE
T ss_conf 954899996766866617834898699999999978999999999966886555---67504554147887389999999
Q ss_pred ECCCCCEEEEEEEEECC-CCC---EEE--ECCEE----ECHHHHHHHH-HHCCCCCCCC--CCCCCCCHHHHHHCCCCHH
Q ss_conf 25998528999998539-960---188--87934----0587899999-8828644653--2333421078986159067
Q 001573 99 GDTKEEHLTIMRKIDTR-NKS---EWF--FNGKV----VPKGEVLEIT-KRFNIQVNNL--TQFLPQDRVCEFAKLSPVK 165 (1051)
Q Consensus 99 ~~~~~~~~~i~R~~~~~-~~~---~~~--~~~~~----~~~~~~~~~~-~~~~i~~~~~--~~~l~q~~~~~~~~~~~~~ 165 (1051)
.++..|.|.|.+.+. +.. .+. .+|.. ....++...+ ..+|++.+.| +.+++||.+..|+.+++.+
T Consensus 78 --~~g~~y~v~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~i~~~lgl~~~~f~~~v~l~Qg~~~~~l~~~~~~ 155 (365)
T 3qf7_A 78 --RGGKRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVKQEVEKILGIEHRTFIRTVFLPQGEIDKLLISPPSE 155 (365)
T ss_dssp --ETTEEEEEEEEEETTTTEEEEEEEEECTTSCEEEEEESHHHHHHHHHHHHTSCHHHHHHHTEECTTCTTTTTTSCHHH
T ss_pred --ECCEEEEEEEEEECCCCCCCCEEEEECCCCCEEECCCCHHHHHHHHHHHHCCCHHHHCEEEEECCCCHHHHHHCCHHH
T ss_conf --899899999998526788760799983799366513676889999999979999994568997332249898539266
Q ss_pred HHHHHHHHHCC
Q ss_conf 89999986299
Q 001573 166 LLEETEKAVGD 176 (1051)
Q Consensus 166 ~~~~~~~~~g~ 176 (1051)
+...+..+++.
T Consensus 156 r~~~l~~lf~~ 166 (365)
T 3qf7_A 156 ITEIISDVFQS 166 (365)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHHHH
T ss_conf 89999999835
No 10
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=1.00 E-value=1 Score=152.67 Aligned_cols=139 Identities=16% Similarity=0.200 Sum_probs=112.2
Q ss_pred CCCEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 87138999974033321067815996159984899984799999999835987555543431000003872469999998
Q 001573 19 MPGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLR 98 (1051)
Q Consensus 19 ~~m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~ 98 (1051)
.+|+|.+|.|.||++|...+++|++|+|+|+||||||||||++||.++++|. . |+....++|++|...+.|.+.|.
T Consensus 2 ~~M~i~~L~l~~~~~~~~~~~~~~~g~~~i~G~nG~GKttll~ai~~~~~g~-~---R~~~~~~lI~~g~~~~~V~~~~~ 77 (359)
T 2o5v_A 2 GDVRLSALSTLNYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLALTGQ-T---DAPRIEQLIQAGETEAYVRADLQ 77 (359)
T ss_dssp CCCCEEEEEEESBTTCCSEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHSC-C---CCSSGGGGBCTTCSCEEEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCC-C---CCCCHHHHHCCCCCCEEEEEEEE
T ss_conf 9868769998273334456999769859999999987559999998742488-7---88777987206998299999982
Q ss_pred ECCCCCEEEEEEEEECCCCCEEEECCEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 25998528999998539960188879340587899999882864465323334210789861590678999998629
Q 001573 99 GDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175 (1051)
Q Consensus 99 ~~~~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~~~g 175 (1051)
+ ++..+.|.+.+..++ ..+.+||..+... +++. + + +.+++++.+ .+...+|.+++.++..+++
T Consensus 78 ~--~~~~~~i~~~~~~~~-~~~~ing~~~~~~---~l~g-l-----~-~v~~~p~d~-~li~g~p~~RR~flD~~l~ 140 (359)
T 2o5v_A 78 Q--GGSLSIQEVGLGRGR-RQLKVDGVRARTG---DLPR-G-----G-AVWIRPEDS-ELVFGPPSGRRAYLDSLLS 140 (359)
T ss_dssp E--TTEEEEEEEEEETTE-EEEEETTEEECGG---GCCS-C-----C-EEEECTTTT-HHHHSCHHHHHHHHHHHHH
T ss_pred C--CCCEEEEEEEEECCC-EEEEECCEECCHH---HHHC-C-----H-HEEECCCCH-HHHCCCHHHHHHHHHHHHH
T ss_conf 4--896699999998796-6999999286799---9827-0-----2-338995537-6651899999999998665
Done!