Query 001574
Match_columns 1051
No_of_seqs 425 out of 1861
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 04:11:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02400 cellulose synthase 100.0 2E-314 4E-319 2782.0 81.4 1025 4-1051 2-1085(1085)
2 PLN02436 cellulose synthase A 100.0 6E-314 1E-318 2767.2 80.7 1030 4-1051 2-1093(1094)
3 PLN02915 cellulose synthase A 100.0 5E-305 1E-309 2693.8 79.6 1016 32-1051 10-1044(1044)
4 PLN02638 cellulose synthase A 100.0 9E-303 2E-307 2679.8 80.8 1008 25-1051 4-1079(1079)
5 PLN02189 cellulose synthase 100.0 2E-298 4E-303 2636.7 81.6 999 4-1051 2-1040(1040)
6 PLN02195 cellulose synthase A 100.0 4E-286 9E-291 2519.1 79.5 968 33-1051 2-977 (977)
7 PLN02248 cellulose synthase-li 100.0 6E-255 1E-259 2261.7 71.5 949 5-1038 88-1125(1135)
8 PF03552 Cellulose_synt: Cellu 100.0 1E-221 2E-226 1927.9 48.0 718 308-1045 1-720 (720)
9 PLN02190 cellulose synthase-li 100.0 5E-204 1E-208 1782.2 58.3 725 210-1030 7-756 (756)
10 PLN02893 Cellulose synthase-li 100.0 2E-195 5E-200 1716.8 63.4 706 209-1028 9-728 (734)
11 TIGR03030 CelA cellulose synth 100.0 4.3E-65 9.3E-70 620.1 47.5 491 229-1004 57-561 (713)
12 PRK11498 bcsA cellulose syntha 100.0 3.2E-65 6.9E-70 622.4 44.4 472 231-1003 189-673 (852)
13 PF14569 zf-UDP: Zinc-binding 100.0 4.2E-43 9.2E-48 308.4 4.2 80 29-108 1-80 (80)
14 PRK05454 glucosyltransferase M 100.0 7.9E-35 1.7E-39 351.9 42.2 356 227-844 40-415 (691)
15 cd04191 Glucan_BSP_ModH Glucan 100.0 1.2E-32 2.6E-37 298.7 21.7 182 473-800 67-253 (254)
16 COG1215 Glycosyltransferases, 100.0 1.4E-29 2.9E-34 289.2 28.3 233 305-804 53-290 (439)
17 PRK14583 hmsR N-glycosyltransf 100.0 5.9E-28 1.3E-32 280.4 29.9 231 303-805 72-307 (444)
18 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 1.3E-26 2.8E-31 269.1 31.1 124 695-856 217-341 (439)
19 PRK11204 N-glycosyltransferase 100.0 4.5E-26 9.7E-31 261.3 31.7 235 303-805 51-286 (420)
20 PRK14716 bacteriophage N4 adso 99.9 4.1E-24 8.9E-29 251.4 29.6 265 304-830 64-355 (504)
21 cd06421 CESA_CelA_like CESA_Ce 99.9 3.8E-24 8.1E-29 222.6 20.0 229 306-802 1-234 (234)
22 PRK11234 nfrB bacteriophage N4 99.9 1.6E-23 3.4E-28 255.4 26.3 200 489-835 132-365 (727)
23 cd06437 CESA_CaSu_A2 Cellulose 99.9 1.5E-23 3.2E-28 220.5 20.6 227 306-798 1-232 (232)
24 cd06427 CESA_like_2 CESA_like_ 99.9 2.6E-22 5.6E-27 213.1 19.2 233 306-804 1-236 (241)
25 cd06435 CESA_NdvC_like NdvC_li 99.9 1.2E-21 2.7E-26 205.5 22.7 173 475-804 58-234 (236)
26 PF13641 Glyco_tranf_2_3: Glyc 99.9 1.4E-22 3E-27 211.2 6.0 224 306-797 1-228 (228)
27 PRK15489 nfrB bacteriophage N4 99.8 2.2E-18 4.9E-23 208.7 28.8 172 488-803 139-342 (703)
28 cd04190 Chitin_synth_C C-termi 99.8 6.3E-20 1.4E-24 196.6 11.6 52 747-800 190-243 (244)
29 TIGR03472 HpnI hopanoid biosyn 99.8 2.1E-18 4.6E-23 196.4 24.7 234 304-798 39-272 (373)
30 cd04192 GT_2_like_e Subfamily 99.8 2E-18 4.4E-23 178.4 16.6 122 310-552 1-122 (229)
31 cd02520 Glucosylceramide_synth 99.8 7E-18 1.5E-22 173.9 16.5 48 748-797 148-195 (196)
32 cd06434 GT2_HAS Hyaluronan syn 99.7 8.5E-17 1.8E-21 168.2 18.5 59 488-555 62-120 (235)
33 cd06439 CESA_like_1 CESA_like_ 99.7 2E-16 4.4E-21 167.6 18.5 126 302-553 25-150 (251)
34 TIGR03469 HonB hopene-associat 99.7 3E-15 6.5E-20 171.5 24.6 133 302-548 36-169 (384)
35 PF13632 Glyco_trans_2_3: Glyc 99.6 2.9E-15 6.2E-20 153.4 13.3 50 747-798 94-143 (193)
36 cd02525 Succinoglycan_BP_ExoA 99.6 2.1E-14 4.6E-19 150.4 18.5 76 695-804 158-233 (249)
37 COG2943 MdoH Membrane glycosyl 99.6 3E-12 6.5E-17 147.1 36.6 228 475-851 214-442 (736)
38 cd06436 GlcNAc-1-P_transferase 99.4 1.2E-12 2.6E-17 135.2 13.4 115 474-595 51-175 (191)
39 cd06438 EpsO_like EpsO protein 99.3 7.9E-12 1.7E-16 127.5 11.4 61 488-554 61-122 (183)
40 cd04184 GT2_RfbC_Mx_like Myxoc 99.3 7.9E-11 1.7E-15 120.3 15.8 121 306-550 1-122 (202)
41 cd04195 GT2_AmsE_like GT2_AmsE 99.2 2.8E-10 6.1E-15 116.4 15.7 64 475-552 57-121 (201)
42 PF14570 zf-RING_4: RING/Ubox 99.1 1.8E-11 3.8E-16 101.0 2.6 48 40-90 1-48 (48)
43 PF13506 Glyco_transf_21: Glyc 99.1 4.3E-10 9.4E-15 116.4 11.3 60 488-555 15-74 (175)
44 cd06433 GT_2_WfgS_like WfgS an 99.1 2.3E-09 4.9E-14 108.0 14.4 54 490-552 62-116 (202)
45 cd02522 GT_2_like_a GT_2_like_ 99.0 1.4E-08 3E-13 105.3 16.0 40 308-353 1-40 (221)
46 cd06420 GT2_Chondriotin_Pol_N 98.9 1.9E-08 4.1E-13 101.2 15.8 42 489-536 65-106 (182)
47 cd04196 GT_2_like_d Subfamily 98.9 8E-09 1.7E-13 105.9 13.4 64 475-552 56-120 (214)
48 cd02510 pp-GalNAc-T pp-GalNAc- 98.9 1.3E-08 2.9E-13 112.3 15.9 109 310-535 2-110 (299)
49 cd04186 GT_2_like_c Subfamily 98.9 2.5E-08 5.5E-13 97.5 14.3 52 489-548 60-111 (166)
50 PF03142 Chitin_synth_2: Chiti 98.8 8.3E-07 1.8E-11 105.9 26.9 53 748-802 324-378 (527)
51 PLN02726 dolichyl-phosphate be 98.8 9.5E-08 2.1E-12 102.3 16.8 59 475-547 70-128 (243)
52 cd02526 GT2_RfbF_like RfbF is 98.8 5.3E-08 1.1E-12 102.3 14.6 49 475-530 49-97 (237)
53 cd04185 GT_2_like_b Subfamily 98.8 1E-07 2.2E-12 98.1 16.0 66 475-552 53-118 (202)
54 PF00535 Glycos_transf_2: Glyc 98.8 7.4E-09 1.6E-13 100.4 6.8 110 474-595 54-165 (169)
55 cd06913 beta3GnTL1_like Beta 1 98.8 8E-08 1.7E-12 100.6 14.8 40 310-354 1-40 (219)
56 cd06442 DPM1_like DPM1_like re 98.7 1.7E-07 3.6E-12 97.5 14.1 60 475-548 55-114 (224)
57 cd06423 CESA_like CESA_like is 98.7 1.2E-07 2.7E-12 91.6 10.9 108 475-596 55-167 (180)
58 cd04188 DPG_synthase DPG_synth 98.5 1.4E-06 3.1E-11 90.7 12.9 52 490-550 69-120 (211)
59 cd04179 DPM_DPG-synthase_like 98.5 9.5E-07 2.1E-11 88.9 11.1 109 475-597 56-165 (185)
60 TIGR01556 rhamnosyltran L-rham 98.4 4.6E-06 1E-10 91.2 15.3 69 474-552 46-114 (281)
61 PRK10073 putative glycosyl tra 98.4 5.8E-06 1.3E-10 93.7 15.0 44 304-353 4-47 (328)
62 cd04187 DPM1_like_bac Bacteria 98.2 1.2E-05 2.7E-10 81.4 12.2 104 474-596 56-160 (181)
63 PRK10063 putative glycosyl tra 98.2 3.5E-05 7.5E-10 84.1 15.8 45 306-354 1-46 (248)
64 cd00761 Glyco_tranf_GTA_type G 98.1 3.5E-05 7.6E-10 72.7 12.8 52 488-548 62-114 (156)
65 KOG2571 Chitin synthase/hyalur 98.1 4.3E-05 9.4E-10 94.8 16.5 49 748-798 549-597 (862)
66 PTZ00260 dolichyl-phosphate be 98.1 8.7E-05 1.9E-09 84.5 16.2 42 489-535 148-189 (333)
67 PRK10018 putative glycosyl tra 98.0 3.3E-05 7.2E-10 86.0 11.9 51 474-534 61-111 (279)
68 PF10111 Glyco_tranf_2_2: Glyc 98.0 0.00011 2.4E-09 81.4 16.0 61 489-555 74-134 (281)
69 COG1216 Predicted glycosyltran 98.0 0.00025 5.5E-09 79.3 17.3 69 473-553 56-126 (305)
70 PRK13915 putative glucosyl-3-p 97.8 8.2E-05 1.8E-09 83.9 10.8 51 489-547 101-152 (306)
71 PRK10714 undecaprenyl phosphat 97.0 0.0044 9.6E-08 70.5 11.6 41 489-534 76-116 (325)
72 COG5175 MOT2 Transcriptional r 96.7 0.00067 1.5E-08 75.8 1.6 48 39-89 16-63 (480)
73 COG0463 WcaA Glycosyltransfera 96.7 0.011 2.3E-07 56.7 9.7 43 305-353 2-44 (291)
74 KOG2547 Ceramide glucosyltrans 96.6 0.03 6.6E-07 64.3 13.7 157 488-795 155-313 (431)
75 cd02511 Beta4Glucosyltransfera 96.2 0.035 7.5E-07 59.3 10.7 42 490-536 58-99 (229)
76 PF14446 Prok-RING_1: Prokaryo 95.4 0.01 2.2E-07 50.9 2.3 45 37-89 5-51 (54)
77 TIGR00570 cdk7 CDK-activating 95.2 0.019 4.1E-07 65.0 4.4 59 36-96 2-60 (309)
78 cd02514 GT13_GLCNAC-TI GT13_GL 94.0 0.62 1.3E-05 53.9 12.9 41 309-353 3-43 (334)
79 PF02364 Glucan_synthase: 1,3- 91.0 2.9 6.2E-05 53.2 13.9 103 689-826 379-482 (817)
80 PF05290 Baculo_IE-1: Baculovi 89.0 0.24 5.2E-06 49.8 2.1 51 38-92 81-134 (140)
81 cd00162 RING RING-finger (Real 87.5 0.5 1.1E-05 36.7 2.7 44 39-88 1-44 (45)
82 smart00504 Ubox Modified RING 81.1 1.5 3.2E-05 37.7 3.0 44 39-90 3-46 (63)
83 PHA02929 N1R/p28-like protein; 74.5 3.2 6.9E-05 46.0 3.9 55 35-90 172-227 (238)
84 KOG2068 MOT2 transcription fac 73.2 2.8 6.1E-05 48.1 3.1 52 37-92 249-300 (327)
85 KOG2932 E3 ubiquitin ligase in 73.0 1.8 3.8E-05 49.1 1.5 44 50-93 84-137 (389)
86 PLN03208 E3 ubiquitin-protein 71.6 3.8 8.2E-05 44.1 3.5 63 22-91 3-80 (193)
87 PF14447 Prok-RING_4: Prokaryo 70.6 2.2 4.8E-05 37.0 1.2 47 36-92 6-52 (55)
88 PRK14559 putative protein seri 70.2 2.5 5.5E-05 52.9 2.1 23 67-90 30-52 (645)
89 KOG2978 Dolichol-phosphate man 70.1 30 0.00064 37.5 9.5 52 474-535 64-115 (238)
90 PF13639 zf-RING_2: Ring finge 67.2 3.5 7.5E-05 33.3 1.7 43 39-86 2-44 (44)
91 smart00659 RPOLCX RNA polymera 65.8 3.7 8E-05 34.1 1.6 26 39-66 4-29 (44)
92 PF02318 FYVE_2: FYVE-type zin 65.6 1.5 3.3E-05 43.2 -0.8 48 35-85 52-100 (118)
93 PF03604 DNA_RNApol_7kD: DNA d 64.8 4.8 0.0001 31.3 1.9 26 39-66 2-27 (32)
94 PHA02825 LAP/PHD finger-like p 64.6 5 0.00011 41.9 2.6 51 36-92 7-61 (162)
95 PHA02862 5L protein; Provision 63.9 4.3 9.3E-05 41.7 1.9 49 37-91 2-54 (156)
96 KOG0006 E3 ubiquitin-protein l 63.7 5.6 0.00012 45.3 2.9 40 32-72 310-352 (446)
97 KOG1734 Predicted RING-contain 62.3 3.1 6.7E-05 46.5 0.7 58 30-90 217-281 (328)
98 PF03966 Trm112p: Trm112p-like 62.2 2.3 4.9E-05 38.0 -0.3 25 68-92 42-66 (68)
99 KOG3800 Predicted E3 ubiquitin 61.2 6 0.00013 44.8 2.6 53 38-92 1-53 (300)
100 KOG2977 Glycosyltransferase [G 60.4 1.2E+02 0.0027 34.8 12.5 41 490-534 144-186 (323)
101 smart00184 RING Ring finger. E 59.5 8.4 0.00018 28.6 2.5 39 40-85 1-39 (39)
102 PF14471 DUF4428: Domain of un 54.3 7.3 0.00016 33.3 1.5 28 39-72 1-28 (51)
103 PF13923 zf-C3HC4_2: Zinc fing 53.4 12 0.00026 29.6 2.4 39 40-85 1-39 (39)
104 PF13920 zf-C3HC4_3: Zinc fing 53.1 12 0.00027 31.0 2.6 46 38-91 3-49 (50)
105 PRK00420 hypothetical protein; 52.3 6.8 0.00015 38.8 1.1 29 57-91 24-52 (112)
106 PF00097 zf-C3HC4: Zinc finger 51.7 11 0.00024 29.7 2.0 40 40-85 1-41 (41)
107 smart00291 ZnF_ZZ Zinc-binding 50.1 16 0.00034 30.0 2.7 38 36-78 3-41 (44)
108 KOG0823 Predicted E3 ubiquitin 49.7 14 0.00031 40.7 3.1 50 35-92 45-97 (230)
109 PRK15103 paraquat-inducible me 49.1 13 0.00028 44.5 3.0 31 54-93 219-249 (419)
110 PRK12495 hypothetical protein; 48.9 10 0.00023 41.4 1.9 29 56-91 42-70 (226)
111 COG5114 Histone acetyltransfer 47.9 6.2 0.00014 45.0 0.1 36 39-78 7-43 (432)
112 COG4858 Uncharacterized membra 47.9 99 0.0021 33.5 8.7 60 953-1012 99-161 (226)
113 smart00249 PHD PHD zinc finger 47.8 13 0.00028 29.2 1.9 43 39-85 1-47 (47)
114 COG0068 HypF Hydrogenase matur 46.4 15 0.00032 46.4 2.9 55 36-90 100-184 (750)
115 PHA02926 zinc finger-like prot 45.6 21 0.00045 39.4 3.5 62 34-95 167-235 (242)
116 KOG3737 Predicted polypeptide 45.5 1E+02 0.0022 36.8 9.0 47 301-350 150-196 (603)
117 TIGR00155 pqiA_fam integral me 45.1 14 0.0003 44.1 2.3 30 55-92 214-243 (403)
118 KOG2068 MOT2 transcription fac 43.7 10 0.00022 43.8 0.9 29 63-91 1-31 (327)
119 PRK04023 DNA polymerase II lar 43.4 17 0.00036 47.4 2.8 47 35-91 624-675 (1121)
120 PRK12380 hydrogenase nickel in 42.0 11 0.00023 37.2 0.7 26 57-89 71-96 (113)
121 PF07282 OrfB_Zn_ribbon: Putat 41.1 20 0.00043 31.7 2.2 33 36-69 27-59 (69)
122 PRK00398 rpoP DNA-directed RNA 40.5 17 0.00037 30.0 1.6 27 39-66 5-31 (46)
123 PF13712 Glyco_tranf_2_5: Glyc 39.8 34 0.00074 37.2 4.2 49 489-545 40-89 (217)
124 PRK07220 DNA topoisomerase I; 39.7 18 0.00038 46.4 2.3 48 38-87 590-643 (740)
125 TIGR02443 conserved hypothetic 39.5 20 0.00043 31.8 1.8 31 35-65 7-40 (59)
126 PF07851 TMPIT: TMPIT-like pro 39.5 5E+02 0.011 30.6 13.5 19 883-901 173-191 (330)
127 COG2191 Formylmethanofuran deh 38.7 21 0.00046 38.7 2.3 30 33-72 168-201 (206)
128 cd02335 ZZ_ADA2 Zinc finger, Z 38.3 25 0.00054 29.6 2.2 32 39-74 2-34 (49)
129 PRK11827 hypothetical protein; 38.2 21 0.00046 31.7 1.9 32 65-96 12-43 (60)
130 cd00350 rubredoxin_like Rubred 38.1 15 0.00032 28.5 0.8 20 72-91 10-29 (33)
131 KOG2824 Glutaredoxin-related p 37.9 20 0.00044 40.5 2.1 22 34-63 226-247 (281)
132 PF06906 DUF1272: Protein of u 37.7 32 0.00069 30.2 2.8 47 39-91 7-53 (57)
133 KOG0457 Histone acetyltransfer 37.0 17 0.00038 43.2 1.5 50 37-93 14-64 (438)
134 COG4818 Predicted membrane pro 36.6 3.3E+02 0.0072 26.7 9.5 88 901-1013 5-92 (105)
135 COG1996 RPC10 DNA-directed RNA 35.5 18 0.0004 30.9 1.0 28 38-66 7-34 (49)
136 PRK00564 hypA hydrogenase nick 35.1 16 0.00034 36.3 0.7 13 80-92 89-101 (117)
137 TIGR00599 rad18 DNA repair pro 34.7 32 0.00069 41.0 3.2 53 30-90 18-71 (397)
138 COG0551 TopA Zn-finger domain 34.2 30 0.00064 35.0 2.5 49 35-87 15-68 (140)
139 PF01155 HypA: Hydrogenase exp 33.5 10 0.00022 37.3 -1.0 29 57-92 71-99 (113)
140 PF14634 zf-RING_5: zinc-RING 33.5 39 0.00085 27.4 2.6 43 40-87 2-44 (44)
141 KOG0311 Predicted E3 ubiquitin 33.4 6.2 0.00013 45.7 -2.8 45 39-89 45-89 (381)
142 KOG1941 Acetylcholine receptor 33.1 16 0.00036 42.8 0.5 67 37-106 365-437 (518)
143 PF07649 C1_3: C1-like domain; 32.8 23 0.0005 26.7 1.1 28 39-70 2-29 (30)
144 PRK03681 hypA hydrogenase nick 32.4 19 0.0004 35.6 0.7 28 57-91 71-99 (114)
145 KOG0916 1,3-beta-glucan syntha 32.1 4.2E+02 0.0091 36.6 12.4 84 748-837 1173-1258(1679)
146 PRK14503 mannosyl-3-phosphogly 31.9 99 0.0021 36.6 6.3 41 488-531 142-182 (393)
147 TIGR00100 hypA hydrogenase nic 31.7 22 0.00047 35.2 1.0 29 57-92 71-99 (115)
148 PRK11595 DNA utilization prote 31.7 31 0.00066 37.7 2.3 40 37-89 5-44 (227)
149 PRK14973 DNA topoisomerase I; 31.2 35 0.00076 44.9 3.0 48 38-88 589-644 (936)
150 PF11238 DUF3039: Protein of u 31.0 14 0.0003 32.6 -0.5 13 79-91 44-56 (58)
151 cd02249 ZZ Zinc finger, ZZ typ 30.9 35 0.00075 28.2 1.9 31 39-74 2-33 (46)
152 TIGR01562 FdhE formate dehydro 30.8 51 0.0011 38.0 3.9 44 36-88 183-233 (305)
153 COG2888 Predicted Zn-ribbon RN 30.5 45 0.00098 29.7 2.6 48 37-86 9-57 (61)
154 PF04564 U-box: U-box domain; 30.5 44 0.00096 30.2 2.7 45 39-90 6-50 (73)
155 COG4707 Uncharacterized protei 30.4 18 0.00038 34.9 0.1 44 410-464 20-70 (107)
156 COG1813 Predicted transcriptio 29.9 33 0.00071 36.3 2.0 35 40-78 6-40 (165)
157 cd03031 GRX_GRX_like Glutaredo 29.5 29 0.00062 35.9 1.5 43 36-87 98-141 (147)
158 PRK14890 putative Zn-ribbon RN 29.4 64 0.0014 28.7 3.3 49 37-87 7-56 (59)
159 PRK07219 DNA topoisomerase I; 29.3 33 0.00072 44.5 2.3 53 37-92 688-746 (822)
160 TIGR00143 hypF [NiFe] hydrogen 29.2 23 0.00049 45.3 0.8 55 36-91 67-152 (711)
161 PF09484 Cas_TM1802: CRISPR-as 28.7 27 0.00057 43.6 1.3 44 34-78 195-254 (593)
162 PF00628 PHD: PHD-finger; Int 28.4 40 0.00087 27.8 1.9 44 39-86 1-49 (51)
163 KOG3736 Polypeptide N-acetylga 28.2 67 0.0015 40.1 4.5 49 302-353 138-186 (578)
164 cd02336 ZZ_RSC8 Zinc finger, Z 27.6 46 0.001 27.9 2.1 35 39-78 2-37 (45)
165 PF03884 DUF329: Domain of unk 26.9 40 0.00086 29.8 1.7 33 76-108 15-53 (57)
166 PF00265 TK: Thymidine kinase; 26.8 23 0.00051 37.4 0.3 34 38-71 138-176 (176)
167 PF13704 Glyco_tranf_2_4: Glyc 26.7 2E+02 0.0043 26.5 6.4 27 491-520 58-84 (97)
168 PF13896 Glyco_transf_49: Glyc 26.7 63 0.0014 37.3 3.7 40 505-545 125-164 (317)
169 PRK14873 primosome assembly pr 26.4 44 0.00095 42.5 2.6 11 79-89 422-432 (665)
170 KOG0828 Predicted E3 ubiquitin 26.3 6.9E+02 0.015 31.0 12.0 11 982-992 456-466 (636)
171 KOG3507 DNA-directed RNA polym 26.0 28 0.00061 30.8 0.6 28 37-66 20-47 (62)
172 KOG3088 Secretory carrier memb 26.0 8E+02 0.017 28.5 11.8 67 786-852 81-159 (313)
173 PF09526 DUF2387: Probable met 25.4 46 0.00099 30.5 1.8 30 36-65 7-39 (71)
174 cd00899 b4GalT Beta-4-Galactos 24.7 60 0.0013 35.8 3.0 81 692-802 110-200 (219)
175 PRK04296 thymidine kinase; Pro 24.7 35 0.00076 36.0 1.2 35 38-72 141-186 (190)
176 PRK03824 hypA hydrogenase nick 24.7 29 0.00063 35.3 0.5 11 78-88 106-116 (135)
177 TIGR02460 osmo_MPGsynth mannos 24.5 1.6E+02 0.0035 34.7 6.4 42 487-531 140-181 (381)
178 PF13248 zf-ribbon_3: zinc-rib 24.4 26 0.00055 25.8 0.0 21 67-88 5-25 (26)
179 TIGR03830 CxxCG_CxxCG_HTH puta 24.2 35 0.00075 33.3 1.0 41 40-90 1-42 (127)
180 PF13240 zinc_ribbon_2: zinc-r 24.2 27 0.00058 25.2 0.1 13 76-88 10-22 (23)
181 COG3813 Uncharacterized protei 24.1 66 0.0014 29.7 2.5 48 39-92 7-54 (84)
182 PRK08359 transcription factor; 24.0 30 0.00065 36.9 0.5 31 37-75 6-42 (176)
183 TIGR00595 priA primosomal prot 23.9 41 0.00089 41.2 1.7 49 49-97 205-258 (505)
184 PF02709 Glyco_transf_7C: N-te 23.6 32 0.0007 31.7 0.6 48 693-770 19-66 (78)
185 TIGR01206 lysW lysine biosynth 23.5 53 0.0011 28.6 1.8 12 39-50 4-15 (54)
186 PRK14714 DNA polymerase II lar 23.2 47 0.001 44.5 2.1 48 38-92 668-722 (1337)
187 PF06570 DUF1129: Protein of u 23.1 4.3E+02 0.0094 28.5 9.1 25 950-974 81-105 (206)
188 COG4391 Uncharacterized protei 22.7 35 0.00075 30.5 0.5 17 75-91 44-60 (62)
189 PF04641 Rtf2: Rtf2 RING-finge 22.6 67 0.0015 35.9 2.9 52 35-92 111-163 (260)
190 PRK12438 hypothetical protein; 22.5 9.2E+02 0.02 32.5 13.1 46 984-1029 259-304 (991)
191 PF00643 zf-B_box: B-box zinc 22.5 52 0.0011 26.1 1.5 31 37-74 3-33 (42)
192 TIGR00155 pqiA_fam integral me 22.4 57 0.0012 39.0 2.4 35 55-93 12-47 (403)
193 cd00065 FYVE FYVE domain; Zinc 22.3 47 0.001 28.0 1.3 38 37-77 2-39 (57)
194 PRK06319 DNA topoisomerase I/S 22.1 58 0.0013 42.6 2.6 54 36-92 591-658 (860)
195 smart00744 RINGv The RING-vari 21.3 1E+02 0.0023 26.0 3.1 45 39-86 1-49 (49)
196 cd00729 rubredoxin_SM Rubredox 20.9 36 0.00078 26.7 0.3 11 79-89 18-28 (34)
197 PTZ00293 thymidine kinase; Pro 20.9 45 0.00098 36.5 1.1 35 38-72 138-177 (211)
198 PF03452 Anp1: Anp1; InterPro 20.7 5.6E+02 0.012 29.3 9.6 139 310-462 27-168 (269)
199 PF09623 Cas_NE0113: CRISPR-as 20.7 5.9E+02 0.013 28.4 9.5 60 310-378 4-63 (224)
200 PF12773 DZR: Double zinc ribb 20.6 72 0.0016 26.4 2.0 12 37-48 12-23 (50)
201 COG4739 Uncharacterized protei 20.3 47 0.001 34.5 1.0 46 46-91 77-122 (182)
202 PRK15103 paraquat-inducible me 20.2 52 0.0011 39.5 1.5 33 57-92 11-43 (419)
203 COG2835 Uncharacterized conser 20.2 42 0.00091 29.9 0.5 42 56-102 8-49 (60)
204 KOG2177 Predicted E3 ubiquitin 20.0 51 0.0011 35.2 1.2 44 36-87 12-55 (386)
205 PRK06393 rpoE DNA-directed RNA 20.0 52 0.0011 29.7 1.1 23 55-88 4-26 (64)
No 1
>PLN02400 cellulose synthase
Probab=100.00 E-value=2e-314 Score=2781.98 Aligned_cols=1025 Identities=68% Similarity=1.251 Sum_probs=941.6
Q ss_pred CCCccccccccCCceEEEeecCc-CCCCCCCccCCCcccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCC
Q 001574 4 NPMGSFVAGSHSRNELHVMHANE-EQRPPTRQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCC 82 (1051)
Q Consensus 4 ~~~~~~~~g~~~r~~~~~~~~~~-~~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~C 82 (1051)
|+++|||||||||||||+|++|+ +++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|
T Consensus 2 ~~~~glvaGSh~Rnelv~i~~d~~~g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~C 81 (1085)
T PLN02400 2 EANAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCC 81 (1085)
T ss_pred CCccccccccccccceeeecccccccCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccC
Confidence 68999999999999999999886 44689999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccCccccCCCCcCCCCccchhhhccCCCCCCCCccccccccCCCC-----C-CCCCCcccCCCC-------
Q 001574 83 PGCNTRYKRHKGCARVAGDEEDNFDDDFEDEFKNHYDNQDHDQHHHVTTTRSEN-----G-DNNQNQFLNGPG------- 149 (1051)
Q Consensus 83 PqCkt~Ykr~kgsprv~gd~ee~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~------- 149 (1051)
||||||||||||||||+|||||||+||+||||++++.|++..++ +. +++.+ + .++++|+|++++
T Consensus 82 PQCkTrYkR~KgsprV~GDeeedd~DDlenEf~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~p~lt~g~~~s~ei~ 158 (1085)
T PLN02400 82 PQCKTRYRRHKGSPRVEGDEDEDDVDDLENEFNYAQGNGKARHQ--WQ-GEDIELSSSSRHESQPIPLLTHGQPVSGEIP 158 (1085)
T ss_pred cccCCccccccCCCCCCcccccccchhhhhhhcccccccccccc--cc-ccCccccCcccccCCCCccccCCcccCCCCC
Confidence 99999999999999999999999999999999997554432211 11 11111 0 024567776643
Q ss_pred -----Cc-ccCCC------C-----------------CcccCCCC----CCcchhhhHhHHHHHHHhhhccc-ccc-C--
Q 001574 150 -----SF-AGSVA------G-----------------KDFEGDKE----GYSSAEWQERVEKWKIRQEKRGL-VTK-D-- 192 (1051)
Q Consensus 150 -----~~-~~~~~------~-----------------~~~~~~~~----~~g~~~~~~~~~~wk~~~~~~~~-~~~-~-- 192 (1051)
+| +.++. + ..+|++|| |||||+||||||+||+||+|++. +.+ .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~vh~~p~~d~~~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~k~~~~~~~~~~~ 238 (1085)
T PLN02400 159 CATPDNQSVRTTSGPLGPAERNANSSPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNMMQMTNKYHE 238 (1085)
T ss_pred CCCCccccccCCcccccccCCcccccCccCcccCCCccccCccccccccccCcHHHHHHHHHHHhhhhhhcccccccccc
Confidence 11 11110 1 13889999 99999999999999999965433 222 1
Q ss_pred C--CC--CCCCCCCchhhhhhhcCCCeeEeecCCCCcchhHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHH
Q 001574 193 D--GG--NDQGDGDDDFLMAEARQPLWRKVPIPSSKINPYRIVIILRLFILAFFLRFRILTPAYDAFPLWIISVICEVWF 268 (1051)
Q Consensus 193 ~--~~--~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~v~~l~~l~~yl~~Ri~~~~~~~~~lw~~~~~~Ei~f 268 (1051)
| ++ +++.+++|.++|+++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||
T Consensus 239 ~~~g~~~~~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wF 318 (1085)
T PLN02400 239 GKGGDMEGTGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGLWLTSVICEIWF 318 (1085)
T ss_pred ccccCCCCCCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHH
Confidence 1 11 1123356888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccccchhhhhhhhhhcCCCCCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEec
Q 001574 269 AFSWILDQFPKWFPITRETYLDRLSIRFEREGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSD 348 (1051)
Q Consensus 269 ~~~wil~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsD 348 (1051)
+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||
T Consensus 319 af~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSD 398 (1085)
T PLN02400 319 ALSWLLDQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSD 398 (1085)
T ss_pred HHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEec
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001574 349 DGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQ 428 (1051)
Q Consensus 349 DG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~ 428 (1051)
||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+|+++++
T Consensus 399 DGgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~~~~ 478 (1085)
T PLN02400 399 DGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQ 478 (1085)
T ss_pred CCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCCCCCCCCCCCCCchhhHhhccCCCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCC
Q 001574 429 KKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNA 508 (1051)
Q Consensus 429 ~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tng 508 (1051)
++|+++|.|+|||+|||+++||||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+||||
T Consensus 479 ~~~~~~~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNa 558 (1085)
T PLN02400 479 KIPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNG 558 (1085)
T ss_pred cCCccccccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCccccCCCCCCcccchhhhHHHhhcccccCCCCceeeccCc
Q 001574 509 PFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGC 588 (1051)
Q Consensus 509 p~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~nid~~D~y~n~~~vffdi~~~glDg~qgp~yvGTgc 588 (1051)
|||||||||||+|||+++|+||||||||+.|+++|||||||+|||+|++|||+|||+||||++|+|+||+|||+||||||
T Consensus 559 P~ILNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~~GldGlqGP~YvGTGC 638 (1085)
T PLN02400 559 AYLLNVDCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGC 638 (1085)
T ss_pred ceEEecccccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCcccceeEEeeccccccccCCCccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhhhhcCCCCCCCCC--CCCCCCCCCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccch
Q 001574 589 VFNRQALYGYDPPVSEK--RPKMTCDCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDL 666 (1051)
Q Consensus 589 vfRR~ALyg~~p~~~~~--~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1051)
+|||+||||++||..+. .+.+ .||+||++|+++|+.+... .+.++.. ...+++.+++++
T Consensus 639 ~frR~aLYG~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~~~~~~~ 699 (1085)
T PLN02400 639 CFNRQALYGYDPVLTEEDLEPNI-------IVKSCCGSRKKGKGSKKYN---------IDKKRAM---KRTESNVPIFNM 699 (1085)
T ss_pred ceeeeeeccCCCccccccccccc-------ccccccccccccccccccc---------ccccccc---cccccccccccc
Confidence 99999999999976533 2222 1355777776654322110 0111111 114567789999
Q ss_pred hHHhhhccchhhhhhhhhhhhhhhhhhcCCcHHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceec
Q 001574 667 EEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIY 746 (1051)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~y 746 (1051)
+++++|++++++ |++.++++++++++||+|.+|++|++++.||.+...+++++++||+|||||+||++|+||+||||+|
T Consensus 700 ~~~~~~~~~~~~-~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiY 778 (1085)
T PLN02400 700 EDIEEGVEGYDD-ERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIY 778 (1085)
T ss_pred cccccccccccc-hhhhhhhhhhhhhhccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCeec
Confidence 999999999887 8888999999999999999999999999999998899999999999999999999999999999999
Q ss_pred ccccchHHHHHHHhhCCcEEEEecCCCCcccccCCCCHHHHHHHhhhhhccchhhhhhccCccccccCCCCCcccchhhh
Q 001574 747 GSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYT 826 (1051)
Q Consensus 747 gsvTED~~Tg~rL~~rGWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWa~G~iQil~sk~~Pl~~g~~~~Lt~~QRL~Yl 826 (1051)
||+|||+.||++||++||||+|++|++++|.|+||+|+.+++.||+|||+|++||+++++||+++|+.++|+++|||+|+
T Consensus 779 GSvTED~~TG~~LH~rGWrSvY~~p~r~af~GlAP~~l~d~L~Qr~RWA~G~lqI~~sr~nPl~~G~~~~L~l~QRL~Yl 858 (1085)
T PLN02400 779 GSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYI 858 (1085)
T ss_pred cceechHHHHHHHHccCCceEecCCCcHhhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877899999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCcchhccchHHHHHHHHHHHHHHHHHHhhheecCcccccccccchhHHHHHHHH
Q 001574 827 NTIVYPFTSIPLLAYCTLPAICLLTGKFIIPTLNNLASIWFLALFLSIIVTGVLELRWSGVSIEDWWRNEQFWVIGGVSA 906 (1051)
Q Consensus 827 ~~~ly~l~sl~~liylllPil~LltG~~iip~~s~~~~~~fi~lfls~~~~~lLe~~wsG~sl~~wWr~e~~W~I~~vsa 906 (1051)
++++||++++++++|+++|++||++|++++|.++++++++|+++|++++++++||++|+|+++++||||||||+|.++|+
T Consensus 859 ~~~~y~~~slp~liY~llP~l~LltG~~i~P~vs~~~~~~fi~lf~~~~~~~lLE~~~sG~si~~WWrnQq~w~I~~~Sa 938 (1085)
T PLN02400 859 NTIVYPITSIPLLAYCVLPAFCLITNKFIIPEISNYASMWFILLFISIFATGILELRWSGVGIEDWWRNEQFWVIGGTSA 938 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCccchHHHHHHHHHHHHHHHHHHHHHhhcCccHHHhhhccceeeehhhHH
Confidence 99999999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCeeeCcCCCCc-ccccceeeeccccchHHHHHHHHHHHHHHHHHHHHhHhcCCCCCcchHHH
Q 001574 907 HLFAVFQGLLKVLAGVDTNFTVTSKSAED-EEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGK 985 (1051)
Q Consensus 907 ~lfav~~aLlk~L~g~~~~F~VTpKg~~~-~~~~~ly~f~ws~l~iP~~tLlllnlvaiv~Gi~r~i~~~~~~~~~l~g~ 985 (1051)
++||++++++|+|++++++|.||+|..++ +.++++|+|+||++++|+++++++|++|+++|++++++++++.|++++++
T Consensus 939 ~Lfavl~~ilKvLgg~~~~F~VTsK~~d~~~~~~ely~f~~s~L~iP~ttl~llNlvaiv~Gv~~~i~~g~~~~g~l~~~ 1018 (1085)
T PLN02400 939 HLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLLVNLVGIVAGVSYAINSGYQSWGPLFGK 1018 (1085)
T ss_pred HHHHHHHHHHHHhcCCcccceecCCcccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHH
Confidence 99999999999999999999999998764 35789999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhheeecCCCCCCCCC-cccccCCCC
Q 001574 986 LFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLLWVRIDPFLPKQKGP-LLKQCGVEC 1051 (1051)
Q Consensus 986 l~~~~Wvlvnl~Pflkgl~gR~~r~P~~v~~~s~lla~~f~~l~v~i~~~~~~~~~~-~~~~~~~~~ 1051 (1051)
+|+++|+++|+|||++|||||++|+|+||++||++||++||||||+|+||+++++|| ++++|||+|
T Consensus 1019 ~~~~~wvvv~l~Pf~kgL~gR~~r~P~~v~~~s~lla~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~ 1085 (1085)
T PLN02400 1019 LFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFVSDTTKAAANGQCGVNC 1085 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHheeccccccCCCCchhHhhcCcCC
Confidence 999999999999999999999999999999999999999999999999999999999 899999999
No 2
>PLN02436 cellulose synthase A
Probab=100.00 E-value=5.6e-314 Score=2767.17 Aligned_cols=1030 Identities=69% Similarity=1.278 Sum_probs=955.4
Q ss_pred CCCccccccccCCceEEEeecCc-CCCCCCCccCCCcccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCC
Q 001574 4 NPMGSFVAGSHSRNELHVMHANE-EQRPPTRQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCC 82 (1051)
Q Consensus 4 ~~~~~~~~g~~~r~~~~~~~~~~-~~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~C 82 (1051)
|+++|||||||||||||++++|+ +++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||+|+|
T Consensus 2 ~~~~~~~~gs~~r~e~~~~~~d~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~C 81 (1094)
T PLN02436 2 NTGGRLIAGSHNRNEFVLINADEIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQAC 81 (1094)
T ss_pred CcccccccccccccceeEeccccccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccC
Confidence 67999999999999999999986 44689999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccCccccCCCCcCCCCccchhhhccCCCCCCCCc-------cccccccCCCCCC-------------CCCC
Q 001574 83 PGCNTRYKRHKGCARVAGDEEDNFDDDFEDEFKNHYDNQDHDQ-------HHHVTTTRSENGD-------------NNQN 142 (1051)
Q Consensus 83 PqCkt~Ykr~kgsprv~gd~ee~~~dd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-------------~~~~ 142 (1051)
|||||+||||||||||+||||||++||+||||+++ .++++.+ +++++++++.+.. ++++
T Consensus 82 pqckt~Y~r~kgs~~~~~d~ee~~~dd~e~ef~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1094)
T PLN02436 82 PQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDYG-NNGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPGSQI 160 (1094)
T ss_pred cccCCchhhccCCCCcCCccccccchhhhhhhcCc-ccccchHHHHHHHhhhhcccCccccccccccccccccCCCcCCC
Confidence 99999999999999999999999999999999986 3332211 2567766543310 2456
Q ss_pred cccCCCCC--------c-c-cCCC---CC-----------------cccCCCC----CCcchhhhHhHHHHHHHhhhccc
Q 001574 143 QFLNGPGS--------F-A-GSVA---GK-----------------DFEGDKE----GYSSAEWQERVEKWKIRQEKRGL 188 (1051)
Q Consensus 143 ~~~~~~~~--------~-~-~~~~---~~-----------------~~~~~~~----~~g~~~~~~~~~~wk~~~~~~~~ 188 (1051)
|++++++. | + .++. || .+||+|| |||||+||||||+||+||+|+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~~~~~ 240 (1094)
T PLN02436 161 PLLTYGEEDVEISSDRHALIVPPSTGHGNRVHPMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQNEKLQ 240 (1094)
T ss_pred cccccCcccCccCCcccccccCCcccccccccccccccccccCCCccCCccccccccccCcHHHHHHHHHHHhhhhhccc
Confidence 77766541 1 1 1111 12 3789999 99999999999999999974443
Q ss_pred cccCC-----CC--CCCCCCCchhhhhhhcCCCeeEeecCCCCcchhHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHH
Q 001574 189 VTKDD-----GG--NDQGDGDDDFLMAEARQPLWRKVPIPSSKINPYRIVIILRLFILAFFLRFRILTPAYDAFPLWIIS 261 (1051)
Q Consensus 189 ~~~~~-----~~--~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~v~~l~~l~~yl~~Ri~~~~~~~~~lw~~~ 261 (1051)
+++.. ++ +++.+++|.++++++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s 320 (1094)
T PLN02436 241 VVKHEGGNDGGNNDGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLWLTS 320 (1094)
T ss_pred ccccccccccCCCCCCCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHH
Confidence 33321 11 122234677888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccchhhhhhhhhhcCCCCCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCC
Q 001574 262 VICEVWFAFSWILDQFPKWFPITRETYLDRLSIRFEREGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDK 341 (1051)
Q Consensus 262 ~~~Ei~f~~~wil~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~k 341 (1051)
++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+||
T Consensus 321 ~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eK 400 (1094)
T PLN02436 321 VICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDK 400 (1094)
T ss_pred HHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHH
Q 001574 342 VSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRIN 421 (1051)
Q Consensus 342 l~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~ 421 (1051)
|+|||||||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||
T Consensus 401 lscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe 480 (1094)
T PLN02436 401 VACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKIN 480 (1094)
T ss_pred eEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccCCCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHh
Q 001574 422 ALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRV 501 (1051)
Q Consensus 422 ~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrv 501 (1051)
+|+++++++|+++|.|+|||+|||++++|||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||
T Consensus 481 ~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNaLlRV 560 (1094)
T PLN02436 481 ALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSLIRV 560 (1094)
T ss_pred HHHhhcccCchhhhhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhhhhhh
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCccccCCCCCCcccchhhhHHHhhcccccCCCCc
Q 001574 502 SAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGP 581 (1051)
Q Consensus 502 Sa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~nid~~D~y~n~~~vffdi~~~glDg~qgp 581 (1051)
||+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|||+|+||||+|||+||||++|+|+||+|||
T Consensus 561 SavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDGlqGP 640 (1094)
T PLN02436 561 SAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGP 640 (1094)
T ss_pred heeecCCceEEecccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeeccccccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCC
Q 001574 582 VYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSA 661 (1051)
Q Consensus 582 ~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1051)
+||||||+|||+||||++||...+.+...++||+.|||+|||.|+++++.++.. +++ .++ .+...
T Consensus 641 ~YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~---~~~~~ 705 (1094)
T PLN02436 641 IYVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKE-----------KKK-KKN---REASK 705 (1094)
T ss_pred cccccCceeeeeeeeccCCccccccccccccccccccccccccccccccccccc-----------ccc-ccc---ccccc
Confidence 999999999999999999998776666678899999999999887754332211 000 111 23455
Q ss_pred CccchhHHhhhccchhhhhhhhhhhhhhhhhhcCCcHHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccc
Q 001574 662 PVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKE 741 (1051)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGke 741 (1051)
+++++++++++++++++ |++..++++.++++||+|.+|++|++++.||.+...+++++++||++||||+||++|+||+|
T Consensus 706 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~e 784 (1094)
T PLN02436 706 QIHALENIEEGIEGSNN-EKSSETPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKE 784 (1094)
T ss_pred ccccccccccccccccc-hhhhhhhhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHh
Confidence 78889999999988776 77888999999999999999999999999999988899999999999999999999999999
Q ss_pred cceecccccchHHHHHHHhhCCcEEEEecCCCCcccccCCCCHHHHHHHhhhhhccchhhhhhccCccccccCCCCCccc
Q 001574 742 IGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLE 821 (1051)
Q Consensus 742 vGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWa~G~iQil~sk~~Pl~~g~~~~Lt~~Q 821 (1051)
|||+|||+|||+.||++||++||||+|++|+++||.|+||+|+.+++.||+|||+|++||+++|++|+|+|+.++|+|+|
T Consensus 785 vGwiYGSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~~~L~l~Q 864 (1094)
T PLN02436 785 IGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLE 864 (1094)
T ss_pred hCeeccceecHHHHHHHHHcCCCceEeCCCCchhhcCcCCCCHHHHHHHHHHHhhcceeeeeccCCcchhcccccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988778999999
Q ss_pred chhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcchhccchHHHHHHHHHHHHHHHHHHhhheecCcccccccccchhHHH
Q 001574 822 RLAYTNTIVYPFTSIPLLAYCTLPAICLLTGKFIIPTLNNLASIWFLALFLSIIVTGVLELRWSGVSIEDWWRNEQFWVI 901 (1051)
Q Consensus 822 RL~Yl~~~ly~l~sl~~liylllPil~LltG~~iip~~s~~~~~~fi~lfls~~~~~lLe~~wsG~sl~~wWr~e~~W~I 901 (1051)
|++|+++++||+++++.++|+++|++||++|++++|.++.+++++|+++|++++++++||++|+|+++++||||||||+|
T Consensus 865 RL~Yl~~~ly~l~Slp~liY~~lP~l~LL~G~~i~P~vs~~~~~~fi~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I 944 (1094)
T PLN02436 865 RFSYINSVVYPWTSIPLIVYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVI 944 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCccchHHHHHHHHHHHHHHHHHHHHHHhccccHHHhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeeeCcCCCCcccccceeeeccccchHHHHHHHHHHHHHHHHHHHHhHhcCCCCCcc
Q 001574 902 GGVSAHLFAVFQGLLKVLAGVDTNFTVTSKSAEDEEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGP 981 (1051)
Q Consensus 902 ~~vsa~lfav~~aLlk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~l~iP~~tLlllnlvaiv~Gi~r~i~~~~~~~~~ 981 (1051)
.++|+++||++++++|+|++++++|.||+|..+++.++++|+|+||++++|+++++++|++|+++|++++++++++.|++
T Consensus 945 ~~tSa~Lfavl~~iLKvLggs~~~F~VTsK~~d~~~~a~ly~f~~S~L~iP~tti~ilNlvaiv~Gi~~~i~~g~~~~g~ 1024 (1094)
T PLN02436 945 GGVSSHLFALFQGLLKVLAGVNTNFTVTSKAADDGEFSELYLFKWTSLLIPPTTLLIINIIGVIVGVSDAINNGYDSWGP 1024 (1094)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccceecccccccccccceeeecceeHhHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence 99999999999999999999999999999998776778999999999999999999999999999999999988889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhheeecCCCCCCCCCcccccCCCC
Q 001574 982 LFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLLWVRIDPFLPKQKGPLLKQCGVEC 1051 (1051)
Q Consensus 982 l~g~l~~~~Wvlvnl~Pflkgl~gR~~r~P~~v~~~s~lla~~f~~l~v~i~~~~~~~~~~~~~~~~~~~ 1051 (1051)
+++++|+++|+++|+|||++|||||++|+||||++||++||++||||||+||||+++ +||++++|||+|
T Consensus 1025 l~~~l~~~~wvvv~lyPf~kgL~gr~~r~P~~v~v~s~lla~~~~l~~v~~~~~~~~-~~~~~~~~~~~~ 1093 (1094)
T PLN02436 1025 LFGRLFFALWVIVHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVSK-GGPVLEICGLDC 1093 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHeeeccccCC-CCccccccCccC
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999
No 3
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=5e-305 Score=2693.81 Aligned_cols=1016 Identities=86% Similarity=1.478 Sum_probs=937.8
Q ss_pred CCccCCCcccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCccccccccCccccCCC-CcCCCCccc
Q 001574 32 TRQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRHKGCARVAGD-EEDNFDDDF 110 (1051)
Q Consensus 32 ~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd-~ee~~~dd~ 110 (1051)
-++.++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |||+++||+
T Consensus 10 ~~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd~ 89 (1044)
T PLN02915 10 RQSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDDF 89 (1044)
T ss_pred ccCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchhh
Confidence 3677999999999999999999999999999999999999999999999999999999999999999999 567888999
Q ss_pred hhhhccCCCCCCCC-ccccccccCCCCCC----CCCCcccCCCCCcccCCCCCcccCCCCCCcchhhhHhHHHHHHHhhh
Q 001574 111 EDEFKNHYDNQDHD-QHHHVTTTRSENGD----NNQNQFLNGPGSFAGSVAGKDFEGDKEGYSSAEWQERVEKWKIRQEK 185 (1051)
Q Consensus 111 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~wk~~~~~ 185 (1051)
|+||+++..+++.+ .+++++++++.+.. ++++|++++. ++..++.+|++||||||++||||||+||+||+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~wk~r~~~wk~~~~~ 165 (1044)
T PLN02915 90 EDEFQIKSPQDHEPVHQNVFAGSENGDYNAQQWRPGGPAFSST----GSVAGKDLEAEREGYGNAEWKDRVDKWKTRQEK 165 (1044)
T ss_pred hhhhccccccccchhhhhhccCCCCccccccccCCCCccccCC----CCcCCCCcCccccCcCCHHHHHHHHHHHhhhhh
Confidence 99999864433322 24667776654311 3455666552 333456799999999999999999999999987
Q ss_pred ccccccCCC-CCCCCCCCchhhhhhhcCCCeeEeecCCCCcchhHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHH
Q 001574 186 RGLVTKDDG-GNDQGDGDDDFLMAEARQPLWRKVPIPSSKINPYRIVIILRLFILAFFLRFRILTPAYDAFPLWIISVIC 264 (1051)
Q Consensus 186 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~v~~l~~l~~yl~~Ri~~~~~~~~~lw~~~~~~ 264 (1051)
++.+.++.+ ..++..++|.++|+++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~c 245 (1044)
T PLN02915 166 RGLVNKDDSDDGDDKGDEEEYLLAEARQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVIC 245 (1044)
T ss_pred hccccccccCCCCCCCCcccccccccCCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHH
Confidence 766665422 1122234678889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccccccchhhhhhhhhhcCCCCCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEE
Q 001574 265 EVWFAFSWILDQFPKWFPITRETYLDRLSIRFEREGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSC 344 (1051)
Q Consensus 265 Ei~f~~~wil~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~ 344 (1051)
|+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|
T Consensus 246 E~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlsc 325 (1044)
T PLN02915 246 EIWFALSWILDQFPKWFPINRETYLDRLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSC 325 (1044)
T ss_pred HHHHHHHHHHccCccccccccccCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeE
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred EEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 001574 345 YVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALV 424 (1051)
Q Consensus 345 yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~ 424 (1051)
||||||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+
T Consensus 326 YvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~ 405 (1044)
T PLN02915 326 YVSDDGASMLLFDTLSETAEFARRWVPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALV 405 (1044)
T ss_pred EEecCCchHhHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccCCCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhcc
Q 001574 425 SKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAV 504 (1051)
Q Consensus 425 ~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~ 504 (1051)
++++++|+++|.|+|||+|||+++||||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+
T Consensus 406 ~~~~~~~~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSav 485 (1044)
T PLN02915 406 AKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAV 485 (1044)
T ss_pred hhhccCCcccccccCCccCCCCCCCCCccceEEeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCccccCCCCCCcccchhhhHHHhhcccccCCCCceee
Q 001574 505 LTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYV 584 (1051)
Q Consensus 505 ~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~nid~~D~y~n~~~vffdi~~~glDg~qgp~yv 584 (1051)
|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|+||||+|||+||||++|+|+||+|||+||
T Consensus 486 mTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~Yv 565 (1044)
T PLN02915 486 LTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYV 565 (1044)
T ss_pred eecCcEEEeeccccccCcchhhHhhceeeecCCCCCeeEEEeCCcccCCCCCCCCcCccceEEEeeecccccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccccccC----CCCcccccc-hhhhh-----hccccc
Q 001574 585 GTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKG----DKRGFFSGL-YTKKK-----KMMGKN 654 (1051)
Q Consensus 585 GTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~----~~~~~~~~~-~~~~~-----~~~~~~ 654 (1051)
||||+|||+||||++||..++.++++++||+.|||+||+.++|+++.+.. +.+..+... ...++ .+....
T Consensus 566 GTGCffrR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (1044)
T PLN02915 566 GTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKK 645 (1044)
T ss_pred cCCceeeeeeecCcCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999887788889999999999999887765432111 111111000 00000 000001
Q ss_pred cccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhcCCcHHHHhhhhhhcCCCCCCCCchhHHHHHHHhhcccccc
Q 001574 655 YVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEE 734 (1051)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~ 734 (1051)
...+++.+++++++|++|+++++++|++++++++.++++||+|.+|++|++.+.+|.+..++++++++||++||||+||+
T Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~ 725 (1044)
T PLN02915 646 YGRKKSQAVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEE 725 (1044)
T ss_pred cccccccccccccccccccccccchhhhhhhhhhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCc
Confidence 23446778899999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred ccccccccceecccccchHHHHHHHhhCCcEEEEecCCCCcccccCCCCHHHHHHHhhhhhccchhhhhhccCccccccC
Q 001574 735 KTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYG 814 (1051)
Q Consensus 735 ~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWa~G~iQil~sk~~Pl~~g~~ 814 (1051)
+|+||+||||+|||+|||+.||++||++||||+|++|+++||.|+||+|+.++++||+|||+|++||++++++|+|+++.
T Consensus 726 ~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~~ 805 (1044)
T PLN02915 726 KTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYG 805 (1044)
T ss_pred cCchhHhhCccccccccHHHHHHHHHccCCcEEeeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred CCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcchhccchHHHHHHHHHHHHHHHHHHhhheecCcccccccc
Q 001574 815 GKLKWLERLAYTNTIVYPFTSIPLLAYCTLPAICLLTGKFIIPTLNNLASIWFLALFLSIIVTGVLELRWSGVSIEDWWR 894 (1051)
Q Consensus 815 ~~Lt~~QRL~Yl~~~ly~l~sl~~liylllPil~LltG~~iip~~s~~~~~~fi~lfls~~~~~lLe~~wsG~sl~~wWr 894 (1051)
++|+++||++|+++++||++++++++|+++|++||++|++++|.++.+++++|+++|+++++++++|++|+|+++++|||
T Consensus 806 ~~L~l~QRL~Yl~~~~yp~~slp~liY~llP~l~LLtG~~i~P~~s~~~~~~f~~lfls~~~~~lLE~~wsG~si~~WWr 885 (1044)
T PLN02915 806 GKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLNNLASIWFLALFLSIIATSVLELRWSGVSIEDLWR 885 (1044)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHh
Confidence 89999999999999999999999999999999999999999998888777888999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCcCCCCcc--cccceeeeccccchHHHHHHHHHHHHHHHHHHHHhH
Q 001574 895 NEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKSAEDE--EFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAI 972 (1051)
Q Consensus 895 ~e~~W~I~~vsa~lfav~~aLlk~L~g~~~~F~VTpKg~~~~--~~~~ly~f~ws~l~iP~~tLlllnlvaiv~Gi~r~i 972 (1051)
|||||+|+++++++||++++++|+|++++++|+||+|..+++ +++++|+|+||++++|+++++++|++|+++|+++++
T Consensus 886 nQq~w~I~~tSa~Lfavl~~iLKvLg~se~~F~VTsK~~d~~~d~~~ely~F~~S~l~iP~ttllllNlvalv~Gi~~~i 965 (1044)
T PLN02915 886 NEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTSKAADDEADEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAI 965 (1044)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccCCcceecCCccccchhhhccceeecceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987633 567999999999999999999999999999999999
Q ss_pred hcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhheeecCCCCCCCCCcccccCCCC
Q 001574 973 NNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLLWVRIDPFLPKQKGPLLKQCGVEC 1051 (1051)
Q Consensus 973 ~~~~~~~~~l~g~l~~~~Wvlvnl~Pflkgl~gR~~r~P~~v~~~s~lla~~f~~l~v~i~~~~~~~~~~~~~~~~~~~ 1051 (1051)
+++++.||++++++|+++|+++|+|||++|||||++|+||||++||++||++||||||+|+||+++++||++++|||+|
T Consensus 966 ~~~~~~~g~l~~~l~~~~wvvv~lyPf~kgLmgR~~r~P~~v~v~s~lla~~~~ll~v~~~~~~~~~~~~~~~~~~~~~ 1044 (1044)
T PLN02915 966 NNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPILKQCGVEC 1044 (1044)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeehHHHHHHHHHHHHHHheeccccCCCCCccccccCCCC
Confidence 8888899999999999999999999999999999999999999999999999999999999999999999999999999
No 4
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=9.1e-303 Score=2679.81 Aligned_cols=1008 Identities=71% Similarity=1.284 Sum_probs=916.7
Q ss_pred CcCC-CCCCCccCCCcccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCccccccccCccccCCCCc
Q 001574 25 NEEQ-RPPTRQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRHKGCARVAGDEE 103 (1051)
Q Consensus 25 ~~~~-~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~e 103 (1051)
|+|. +||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||||
T Consensus 4 ~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gDee 83 (1079)
T PLN02638 4 EGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGDEE 83 (1079)
T ss_pred CCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCcccc
Confidence 4444 489999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC-CccchhhhccCCCCCCCCc-------cccccccCCCCC---------CCCCCcccCCCC------------Cc-cc
Q 001574 104 DNF-DDDFEDEFKNHYDNQDHDQ-------HHHVTTTRSENG---------DNNQNQFLNGPG------------SF-AG 153 (1051)
Q Consensus 104 e~~-~dd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---------~~~~~~~~~~~~------------~~-~~ 153 (1051)
||+ +||+||||++++.+++..+ +++|++|++.+- .++++|++++++ +| +.
T Consensus 84 ed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 163 (1079)
T PLN02638 84 EDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERLSMA 163 (1079)
T ss_pred ccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCcccccCccccCccCCCCCcccccc
Confidence 886 8999999998654433222 367887776431 135678887754 11 11
Q ss_pred CC--CC---------------CcccCCCC----CCcchhhhHhHHHHHHHhhhccc--cccC------CC-C---CCCCC
Q 001574 154 SV--AG---------------KDFEGDKE----GYSSAEWQERVEKWKIRQEKRGL--VTKD------DG-G---NDQGD 200 (1051)
Q Consensus 154 ~~--~~---------------~~~~~~~~----~~g~~~~~~~~~~wk~~~~~~~~--~~~~------~~-~---~~~~~ 200 (1051)
++ .| ..+||+|| ||||++||||||+||.||+|++. +.+. |+ + +++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1079)
T PLN02638 164 SPGAGGKRIPYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDASTDVL 243 (1079)
T ss_pred CccccCCcccccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCccccc
Confidence 11 01 13889999 99999999999999999964432 2221 11 1 11122
Q ss_pred CCchhhhhhhcCCCeeEeecCCCCcchhHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHhhcccc
Q 001574 201 GDDDFLMAEARQPLWRKVPIPSSKINPYRIVIILRLFILAFFLRFRILTPAYDAFPLWIISVICEVWFAFSWILDQFPKW 280 (1051)
Q Consensus 201 ~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~v~~l~~l~~yl~~Ri~~~~~~~~~lw~~~~~~Ei~f~~~wil~q~~kw 280 (1051)
++|+++|+++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||
T Consensus 244 ~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q~~Kw 323 (1079)
T PLN02638 244 MDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQFPKW 323 (1079)
T ss_pred cccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 46888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhhhhcCCCCCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhH
Q 001574 281 FPITRETYLDRLSIRFEREGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALS 360 (1051)
Q Consensus 281 ~Pv~R~t~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~ 360 (1051)
+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.
T Consensus 324 ~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~ 403 (1079)
T PLN02638 324 LPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALS 403 (1079)
T ss_pred cccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHH
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhccCCCCCcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCC
Q 001574 361 ETAEFARRWVPFCKKYIIEPRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDG 440 (1051)
Q Consensus 361 E~a~fA~~WvPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg 440 (1051)
|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+++++++++|+++|+|+||
T Consensus 404 EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~m~dg 483 (1079)
T PLN02638 404 ETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWIMQDG 483 (1079)
T ss_pred HHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCchhhHhhccCCCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCC
Q 001574 441 TPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYL 520 (1051)
Q Consensus 441 ~~w~g~~~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~ 520 (1051)
++|||++++|||+||||+++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+
T Consensus 484 t~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYi 563 (1079)
T PLN02638 484 TPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYI 563 (1079)
T ss_pred ccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhhhcCCCCCCcEEEEecCccccCCCCCCcccchhhhHHHhhcccccCCCCceeeccCceehhhhhcCCCC
Q 001574 521 NNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDP 600 (1051)
Q Consensus 521 ~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~nid~~D~y~n~~~vffdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p 600 (1051)
|||++||+||||||||+.|+++|||||||+|||+|++|||+||++||||++|+|+||+|||+||||||+|||+||||++|
T Consensus 564 Nns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALYG~~p 643 (1079)
T PLN02638 564 NNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEP 643 (1079)
T ss_pred CchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcceeehhhcCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcccCCCCccccccc-cCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccc--hh
Q 001574 601 PVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKK-KGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEG--YD 677 (1051)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 677 (1051)
|...+. +.+..+++||++.++++++. ++. ..|++..++ ...+.+++++++++++.+. ++
T Consensus 644 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 705 (1079)
T PLN02638 644 PIKPKH------KKPGFLSSLCGGSRKKSSKSSKKG---------SDKKKSGKH---VDPTVPVFNLEDIEEGVEGAGFD 705 (1079)
T ss_pred cccccc------cccccccccccccccccccccchh---------hcccccccc---ccccccccccccccccccccccc
Confidence 864321 11122334666643332111 100 000100011 2344567788888877664 33
Q ss_pred hhhhhhhhhhhhhhhhcCCcHHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHH
Q 001574 678 ELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGF 757 (1051)
Q Consensus 678 ~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~ 757 (1051)
+ +++.+++++.++++||+|.+|++|++++.+|.+...+++++++||++|+||+||++|+||+||||+|||+|||+.||+
T Consensus 706 ~-~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~ 784 (1079)
T PLN02638 706 D-EKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGF 784 (1079)
T ss_pred h-hhhhhhhhhhhhhhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHH
Confidence 3 677789999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHhhCCcEEEEecCCCCcccccCCCCHHHHHHHhhhhhccchhhhhhccCccccccCCCCCcccchhhhhhhhhhhhHHH
Q 001574 758 KMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIP 837 (1051)
Q Consensus 758 rL~~rGWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWa~G~iQil~sk~~Pl~~g~~~~Lt~~QRL~Yl~~~ly~l~sl~ 837 (1051)
+||++||||+|++|+++||.|+||+|+.+++.||+|||+|++||+++|++|+++|+.++|+++||++|+++++||+++++
T Consensus 785 rLH~rGWrSvY~~P~r~AF~GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl~~~~yp~~sip 864 (1079)
T PLN02638 785 KMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPITSIP 864 (1079)
T ss_pred HHHcCCCcEEecCCCchHhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999899999999999999999999999999999999999999887789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcchhccchHHHHHHHHHHHHHHHHHHhhheecCcccccccccchhHHHHHHHHHHHHHHHHHHH
Q 001574 838 LLAYCTLPAICLLTGKFIIPTLNNLASIWFLALFLSIIVTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLK 917 (1051)
Q Consensus 838 ~liylllPil~LltG~~iip~~s~~~~~~fi~lfls~~~~~lLe~~wsG~sl~~wWr~e~~W~I~~vsa~lfav~~aLlk 917 (1051)
+++|+++|++||++|++++|.++++++++|+++|++++++++||++|+|+++++||||||||+|.++|+++||++++++|
T Consensus 865 ~liY~llP~l~Ll~G~~i~P~vs~~~~~~f~~lfl~~~~~~llE~~wsG~si~~WWrnQr~w~I~~tSa~lfavl~~iLK 944 (1079)
T PLN02638 865 LLLYCTLPAVCLLTGKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLK 944 (1079)
T ss_pred HHHHHHHHHHHHHcCCccCCCccchHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhhheehhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCeeeCcCCCCcc-cccceeeeccccchHHHHHHHHHHHHHHHHHHHHhHhcCCCCCcchHHHHHHHHHHHHHH
Q 001574 918 VLAGVDTNFTVTSKSAEDE-EFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHL 996 (1051)
Q Consensus 918 ~L~g~~~~F~VTpKg~~~~-~~~~ly~f~ws~l~iP~~tLlllnlvaiv~Gi~r~i~~~~~~~~~l~g~l~~~~Wvlvnl 996 (1051)
+|++++++|.||+|..+++ .++++|+|+||++++|++||+++|++|+++|++++++++++.|+++++++|+++|+++|+
T Consensus 945 ~Lggs~~~F~VTsK~~d~~~~~~ely~f~wS~l~iP~ttl~iiNlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~l 1024 (1079)
T PLN02638 945 VLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHL 1024 (1079)
T ss_pred HHccCcccceeccccccccccccceeEecceehhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHH
Confidence 9999999999999988643 578999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhheeecCCCCCCCCCcccccCCCC
Q 001574 997 YPFLKGLMGRQNRTPTIVVLWSVLLASIFSLLWVRIDPFLPKQKGPLLKQCGVEC 1051 (1051)
Q Consensus 997 ~Pflkgl~gR~~r~P~~v~~~s~lla~~f~~l~v~i~~~~~~~~~~~~~~~~~~~ 1051 (1051)
|||+||||||++|+||||++||++|+++||||||+|+||+++++||.+++||++|
T Consensus 1025 ~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1079 (1079)
T PLN02638 1025 YPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1079 (1079)
T ss_pred HHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 9999999999999999999999999999999999999999999999999999999
No 5
>PLN02189 cellulose synthase
Probab=100.00 E-value=1.6e-298 Score=2636.71 Aligned_cols=999 Identities=73% Similarity=1.294 Sum_probs=914.7
Q ss_pred CCCccccccccCCceEEEeecCcCCCCCCCccCCCcccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCC
Q 001574 4 NPMGSFVAGSHSRNELHVMHANEEQRPPTRQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCP 83 (1051)
Q Consensus 4 ~~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CP 83 (1051)
|+++||+||||||||||++++| +++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+||
T Consensus 2 ~~~~g~~~gs~~r~~~~~~~~~-~~~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~Cp 80 (1040)
T PLN02189 2 EASAGLVAGSHNRNELVVIHGH-EEPKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCP 80 (1040)
T ss_pred Ccccccccccccccceeeeccc-cCCCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCc
Confidence 6899999999999999999987 567899999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccCccccCCCCcCCCCccchhhhccCCCCCCCCc------cccccccCCCCCC--CCCCcccCCCCC-----
Q 001574 84 GCNTRYKRHKGCARVAGDEEDNFDDDFEDEFKNHYDNQDHDQ------HHHVTTTRSENGD--NNQNQFLNGPGS----- 150 (1051)
Q Consensus 84 qCkt~Ykr~kgsprv~gd~ee~~~dd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~~----- 150 (1051)
|||||||||||||||+||||||++||+||||+++..+++.++ +++++++++.+.. ++++|++++++.
T Consensus 81 qCkt~Y~r~kgs~~v~gd~ee~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1040)
T PLN02189 81 QCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDEQDKNKHITEAMLHGKMSYGRGPDDDENNQFPPVITGVRSRPVSG 160 (1040)
T ss_pred ccCCchhhccCCCCcCCccccccchhhhhhccccccccchhHHHHHHhhhhcccCCCcccCCCcCCCcccccCccccccC
Confidence 999999999999999999999999999999998542211111 2567776654411 356677766541
Q ss_pred -----------c-c-cCCCCCc-------------ccCCCCCCcchhhhHhHHHHHHHhhhccccccCCCCCCCCCCCch
Q 001574 151 -----------F-A-GSVAGKD-------------FEGDKEGYSSAEWQERVEKWKIRQEKRGLVTKDDGGNDQGDGDDD 204 (1051)
Q Consensus 151 -----------~-~-~~~~~~~-------------~~~~~~~~g~~~~~~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1051)
| + .+..|++ +||+|| .+||||||+||+||++. ++ +++ .+++|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~wk~rv~~wk~~~~~~-----~~-~~~-~~~~d~ 229 (1040)
T PLN02189 161 EFPIGSGYGHGEQMLSSSLHKRVHPYPVSEPGSAKWDEKKE----GGWKERMDDWKMQQGNL-----GP-DPD-DYDADM 229 (1040)
T ss_pred CcCccccccccccccCCcccCccCcccccCCCcccCCcccc----ccHHHHHHHHHhhcccC-----CC-CCC-CCchhh
Confidence 1 1 1112233 566666 33999999999999611 11 122 224677
Q ss_pred hhhhhhcCCCeeEeecCCCCcchhHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 001574 205 FLMAEARQPLWRKVPIPSSKINPYRIVIILRLFILAFFLRFRILTPAYDAFPLWIISVICEVWFAFSWILDQFPKWFPIT 284 (1051)
Q Consensus 205 ~~~~~~~~pl~~~~~~~~~~~~~yR~~~v~~l~~l~~yl~~Ri~~~~~~~~~lw~~~~~~Ei~f~~~wil~q~~kw~Pv~ 284 (1051)
++++++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+
T Consensus 230 ~~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~~s~~~E~wFaf~Wll~q~~kw~Pv~ 309 (1040)
T PLN02189 230 ALIDEARQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGLWLTSIICEIWFAVSWILDQFPKWFPID 309 (1040)
T ss_pred hhcccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHHHHHHHHHHHHHHHHHHHccCccccccc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhhhcCCCCCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHH
Q 001574 285 RETYLDRLSIRFEREGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAE 364 (1051)
Q Consensus 285 R~t~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~ 364 (1051)
|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.|||+
T Consensus 310 R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~ 389 (1040)
T PLN02189 310 RETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLTFEALSETAE 389 (1040)
T ss_pred ceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHH
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhccCCCCCcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCC
Q 001574 365 FARRWVPFCKKYIIEPRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWP 444 (1051)
Q Consensus 365 fA~~WvPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~ 444 (1051)
|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+++++++++|+++|.|+||++||
T Consensus 390 FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~~m~dGt~W~ 469 (1040)
T PLN02189 390 FARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGWIMQDGTPWP 469 (1040)
T ss_pred HHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccceeccCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchhhHhhccCCCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHH
Q 001574 445 GNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSK 524 (1051)
Q Consensus 445 g~~~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~ 524 (1051)
|++++|||+||||+++++|+.|.+|++||+|||||||||||++||+||||||+|+||||+|||||||||||||||+|||+
T Consensus 470 g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~ 549 (1040)
T PLN02189 470 GNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSK 549 (1040)
T ss_pred CCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCCcEEEEecCccccCCCCCCcccchhhhHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCC
Q 001574 525 AVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSE 604 (1051)
Q Consensus 525 ~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~nid~~D~y~n~~~vffdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~ 604 (1051)
+||+||||||||+.|+++|||||||+|||+|++|||+||++||||++|+|+||+|||+||||||+|||+||||++|++..
T Consensus 550 alr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALyG~~p~~~~ 629 (1040)
T PLN02189 550 AVREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYDPPKGP 629 (1040)
T ss_pred HHHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeeecccccCCCccccccCceeeeeeeeccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998665
Q ss_pred CCCCCCCCCCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhh
Q 001574 605 KRPKMTCDCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSL 684 (1051)
Q Consensus 605 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1051)
+.+..++. +|+||+.+++++..+... +.. .++++++++ +++..
T Consensus 630 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~------------------------~~~-------~~~~~~~~~-~~~~~ 672 (1040)
T PLN02189 630 KRPKMVTC-----DCCPCFGRRKKKHAKNGL------------------------NGE-------VAALGGMES-DKEML 672 (1040)
T ss_pred cccccccc-----chhhhccccccccccccc------------------------ccc-------cccccccch-hhhhh
Confidence 44433321 234555544332111000 000 011222222 45567
Q ss_pred hhhhhhhhhcCCcHHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCc
Q 001574 685 MSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGW 764 (1051)
Q Consensus 685 ~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGW 764 (1051)
+++++++++||+|.+|++|++.+.+|.+..++++++++||++|+||+||++|+||+||||+|||+|||+.||++||++||
T Consensus 673 ~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTED~~TG~rlH~rGW 752 (1040)
T PLN02189 673 MSQMNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDILTGFKMHCRGW 752 (1040)
T ss_pred hhhhhhHhhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccccCCchhhccCeeccccccHHHHHHHHHccCC
Confidence 78899999999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcccccCCCCHHHHHHHhhhhhccchhhhhhccCccccccC-CCCCcccchhhhhhhhhhhhHHHHHHHHH
Q 001574 765 KSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYG-GKLKWLERLAYTNTIVYPFTSIPLLAYCT 843 (1051)
Q Consensus 765 rsvY~~p~~~af~G~aP~tl~~~l~QR~RWa~G~iQil~sk~~Pl~~g~~-~~Lt~~QRL~Yl~~~ly~l~sl~~liyll 843 (1051)
||+|++|++++|.|+||+|+.+++.||+|||+|++||+++++||+++|+. ++|+++||++|+++++||++++++++|++
T Consensus 753 rSvY~~p~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~l~QRL~Yl~~~ly~~~sip~liY~~ 832 (1040)
T PLN02189 753 RSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKGGNLKWLERFAYVNTTIYPFTSLPLLAYCT 832 (1040)
T ss_pred ceEecCCCcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998763 67999999999999999999999999999
Q ss_pred HHHHHHHhCCcchhccchHHHHHHHHHHHHHHHHHHhhheecCcccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 001574 844 LPAICLLTGKFIIPTLNNLASIWFLALFLSIIVTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVD 923 (1051)
Q Consensus 844 lPil~LltG~~iip~~s~~~~~~fi~lfls~~~~~lLe~~wsG~sl~~wWr~e~~W~I~~vsa~lfav~~aLlk~L~g~~ 923 (1051)
+|++||++|++++|.++++++++|+++|+++++++++|++|+|+++++||||||||+|.++|+++||++++++|+|++++
T Consensus 833 lP~l~Ll~g~~i~p~vs~~~~~~fi~lf~~~~~~~llE~~~sG~s~~~WWrnQq~w~I~~~Sa~Lfavl~~ilKvlggs~ 912 (1040)
T PLN02189 833 LPAICLLTGKFIMPPISTFASLFFIALFMSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGID 912 (1040)
T ss_pred HHHHHHhcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeCcCCCCcccccceeeeccccchHHHHHHHHHHHHHHHHHHHHhHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 001574 924 TNFTVTSKSAEDEEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGL 1003 (1051)
Q Consensus 924 ~~F~VTpKg~~~~~~~~ly~f~ws~l~iP~~tLlllnlvaiv~Gi~r~i~~~~~~~~~l~g~l~~~~Wvlvnl~Pflkgl 1003 (1051)
++|.||+|..+++.++++|+|+||++++|+++++++|++|+++|++++++++++.|+++++++|+++|+++|+|||+|||
T Consensus 913 ~~F~VTsK~~~d~~~~~ly~f~~s~l~iP~ttl~i~Nlvaiv~g~~~~~~~~~~~~~~~~~~~~~~~wvv~~~~Pf~kgl 992 (1040)
T PLN02189 913 TNFTVTSKATDDDEFGELYAFKWTTLLIPPTTLLIINIVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 992 (1040)
T ss_pred ccceeccccccccccccceeecceeHhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888889999999999999999999999999999999998888899999999999999999999999999
Q ss_pred hcCCCCCcchHHHHHHHHHHHHHhhheeecCCCCCCCCCcccccCCCC
Q 001574 1004 MGRQNRTPTIVVLWSVLLASIFSLLWVRIDPFLPKQKGPLLKQCGVEC 1051 (1051)
Q Consensus 1004 ~gR~~r~P~~v~~~s~lla~~f~~l~v~i~~~~~~~~~~~~~~~~~~~ 1051 (1051)
|||++|+||||++||++|+++||||||+|+||+++++||.+++||++|
T Consensus 993 ~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1040 (1040)
T PLN02189 993 MGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDVKQCGINC 1040 (1040)
T ss_pred hccCCCCCeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 999999999999999999999999999999999999999999999999
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=4.1e-286 Score=2519.07 Aligned_cols=968 Identities=70% Similarity=1.254 Sum_probs=878.9
Q ss_pred CccCCCcccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCccccccccCccccCCCCcCCCCccchh
Q 001574 33 RQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRHKGCARVAGDEEDNFDDDFED 112 (1051)
Q Consensus 33 ~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~ee~~~dd~~~ 112 (1051)
-.+++|+||||||+||+|+|||+|||||||+|||||||||||||||||+||||||||| ||++.||+|+
T Consensus 2 ~~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk------------~~~~~~d~~~ 69 (977)
T PLN02195 2 MESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD------------AENVFDDVET 69 (977)
T ss_pred CcCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc------------cccccchhhh
Confidence 3578999999999999999999999999999999999999999999999999999998 5677899999
Q ss_pred hhccCCCCCCCCccccccccCCCCCCCCCCcccCCCCCcccCCCCCcccCCCCCCcchhhhHhHHHHHHHhhhccc-ccc
Q 001574 113 EFKNHYDNQDHDQHHHVTTTRSENGDNNQNQFLNGPGSFAGSVAGKDFEGDKEGYSSAEWQERVEKWKIRQEKRGL-VTK 191 (1051)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~wk~~~~~~~~-~~~ 191 (1051)
||+- ++ ++..++++++++.+..++++|++++- ++ .+. ++|||++||||||+||.||+|++. +.+
T Consensus 70 ~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~---~~~~~~~wk~r~~~wk~~~~~~~~~~~~ 134 (977)
T PLN02195 70 KHSR---NQ-STMASHLNDTQDVGIHARHISSVSTV-------DS-ELN---DEYGNPIWKNRVESWKDKKNKKKKSAKK 134 (977)
T ss_pred hhcc---ch-hhhhhhcccCcCCCCCCccccccccC-------CC-ccc---CccCCHHHHHHHHHHHHhhhhhcccccc
Confidence 9943 21 12346777765533212334444331 01 111 469999999999999999965443 222
Q ss_pred C----CCCCCCCCCCchhhhhhhcCCCeeEeecCCCCcchhHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHH
Q 001574 192 D----DGGNDQGDGDDDFLMAEARQPLWRKVPIPSSKINPYRIVIILRLFILAFFLRFRILTPAYDAFPLWIISVICEVW 267 (1051)
Q Consensus 192 ~----~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~v~~l~~l~~yl~~Ri~~~~~~~~~lw~~~~~~Ei~ 267 (1051)
+ |+.++++.++|.++ ||.++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~-~~~~~pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~w 213 (977)
T PLN02195 135 KEAHKAQIPPEQQMEEKPS-ADAYEPLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIW 213 (977)
T ss_pred ccccccCCCCccCCccccc-ccccCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence 2 22122223456664 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccccchhhhhhhhhhcCCCCCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 001574 268 FAFSWILDQFPKWFPITRETYLDRLSIRFEREGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVS 347 (1051)
Q Consensus 268 f~~~wil~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvs 347 (1051)
|+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+||||
T Consensus 214 Faf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvS 293 (977)
T PLN02195 214 FAFSWVLDQFPKWSPINRETYIDRLSARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVS 293 (977)
T ss_pred HHHHHHHhcccccccccceECHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEe
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred cCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001574 348 DDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKA 427 (1051)
Q Consensus 348 DDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~ 427 (1051)
|||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+|++++
T Consensus 294 DDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~ 373 (977)
T PLN02195 294 DDGAAMLSFESLVETAEFARKWVPFCKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKA 373 (977)
T ss_pred cCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccCCCCCCCCCCCCCchhhHhhccCCCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCC
Q 001574 428 QKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTN 507 (1051)
Q Consensus 428 ~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tn 507 (1051)
+++|+++|.|+|||+|||+++||||+||||+++++|+.|.+|++||+|||||||||||++||+||||||+|+||||+|||
T Consensus 374 ~~~~~~~~~m~d~t~W~g~~~~dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTN 453 (977)
T PLN02195 374 QKTPEEGWTMQDGTPWPGNNTRDHPGMIQVFLGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTN 453 (977)
T ss_pred ccCCcccccccCCccCCCCCCCCCcchhhhhccCCCCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCccccCCCCCCcccchhhhHHHhhcccccCCCCceeeccC
Q 001574 508 APFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTG 587 (1051)
Q Consensus 508 gp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~nid~~D~y~n~~~vffdi~~~glDg~qgp~yvGTg 587 (1051)
||||||||||||+|||++||+|||||+||+.|+++|||||||+|+|+|++|+|+|++++|||++|+|+||+|||+|||||
T Consensus 454 ap~il~lDcDmy~n~s~~lr~AMCf~~D~~~g~~va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTG 533 (977)
T PLN02195 454 APYILNLDCDHYVNNSKAVREAMCFLMDPVVGRDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTG 533 (977)
T ss_pred CCeEEEecCccccCcHHHHHHHHhhccCcccCCeeEEEcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchh
Q 001574 588 CVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLE 667 (1051)
Q Consensus 588 cvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1051)
|+|||+||||++|+..++.++..+.+| | +||+++++....++.. ++..++ .+.+..+.+++
T Consensus 534 C~fRR~ALyG~~p~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~------------~~~~~~---~~~~~~~~~~~ 594 (977)
T PLN02195 534 CVFNRQALYGYGPPSLPRLPKSSSSSS---S-CCCPTKKKPEQDPSEI------------YRDAKR---EDLNAAIFNLR 594 (977)
T ss_pred ceeeehhhhccCccccccccccccccc---c-ccccccccccccchhh------------cccccc---ccccccccccc
Confidence 999999999999887655444444433 3 4666544432111010 000111 11222333444
Q ss_pred HHhhhccchhhhhhhhhhhhhhhhhhcCCcHHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecc
Q 001574 668 EIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYG 747 (1051)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~yg 747 (1051)
++++ +++.|++..+++++++++||+|.+|++|++.+.+|.+...+++++++||++|+||+||++|+||+||||+||
T Consensus 595 ~~~~----~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YG 670 (977)
T PLN02195 595 EIDN----YDEYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYG 670 (977)
T ss_pred cccc----cchhhhhhhhhhhHHHHhhcccHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhhcccCccccchhhhcCeecc
Confidence 4332 444577888999999999999999999999999999988889999999999999999999999999999999
Q ss_pred cccchHHHHHHHhhCCcEEEEecCCCCcccccCCCCHHHHHHHhhhhhccchhhhhhccCccccccC-CCCCcccchhhh
Q 001574 748 SITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYG-GKLKWLERLAYT 826 (1051)
Q Consensus 748 svTED~~Tg~rL~~rGWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWa~G~iQil~sk~~Pl~~g~~-~~Lt~~QRL~Yl 826 (1051)
|+|||+.||++||++||||+|++|.+++|.|+||+|+.+++.||+|||+|++||+++++||+|+|+. ++|+++||++|+
T Consensus 671 SvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~~~QRL~Yl 750 (977)
T PLN02195 671 SVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLAYI 750 (977)
T ss_pred ceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHHHHHHHHHHHHhchhhhhhccCCccccccCCCCCCHHHHHHHH
Confidence 9999999999999999999999998889999999999999999999999999999999999998764 789999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCcchhccchHHHHHHHHHHHHHHHHHHhhheecCcccccccccchhHHHHHHHH
Q 001574 827 NTIVYPFTSIPLLAYCTLPAICLLTGKFIIPTLNNLASIWFLALFLSIIVTGVLELRWSGVSIEDWWRNEQFWVIGGVSA 906 (1051)
Q Consensus 827 ~~~ly~l~sl~~liylllPil~LltG~~iip~~s~~~~~~fi~lfls~~~~~lLe~~wsG~sl~~wWr~e~~W~I~~vsa 906 (1051)
++++||++++++++|+++|++||++|++++|.++.+++++|+++|+++++++++|++|+|+++++||||||||+|+++|+
T Consensus 751 ~~~ly~~~slp~liY~~lP~l~Ll~G~~i~P~vs~~~~~~f~~lfl~~~~~~~lE~~~sG~si~~WWrnqq~w~I~~tSa 830 (977)
T PLN02195 751 NTIVYPFTSLPLIAYCTLPAICLLTGKFIIPTLSNLASMLFLGLFISIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSA 830 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCeecccchHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhhhhhhhhhhhhHH
Confidence 99999999999999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCeeeCcCCCCcccccceeeeccccchHHHHHHHHHHHHHHHHHHHHhHhcCCCCCcchHHHH
Q 001574 907 HLFAVFQGLLKVLAGVDTNFTVTSKSAEDEEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKL 986 (1051)
Q Consensus 907 ~lfav~~aLlk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~l~iP~~tLlllnlvaiv~Gi~r~i~~~~~~~~~l~g~l 986 (1051)
+|||++++++|+|++++++|.||+|..++++++++|+|+||++++|+++++++|++|+++|++++++++++.||++++++
T Consensus 831 ~Lfavl~~llKvLggs~~~F~VTsK~~dd~~~~~~Y~f~~S~l~iP~ttl~ilNlvaiv~g~~~~i~~~~~~~g~l~~~~ 910 (977)
T PLN02195 831 HLFAVFQGFLKMLAGLDTNFTVTAKAADDTEFGELYMVKWTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKV 910 (977)
T ss_pred HHHHHHHHHHHHHcCCCccceeccccccccchhcceeccceehhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHH
Confidence 99999999999999999999999999887788999999999999999999999999999999999998888999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhheeecCCCCCCCCCc-cccc-CCCC
Q 001574 987 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLLWVRIDPFLPKQKGPL-LKQC-GVEC 1051 (1051)
Q Consensus 987 ~~~~Wvlvnl~Pflkgl~gR~~r~P~~v~~~s~lla~~f~~l~v~i~~~~~~~~~~~-~~~~-~~~~ 1051 (1051)
|+++|+++|+|||+||||||++|+|+||++||++||++||||||+||||+++++||+ +++| |++|
T Consensus 911 ~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~ 977 (977)
T PLN02195 911 FFAFWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVGKTDTTTLSNNCISIDC 977 (977)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHeeccccccCCCCCchhhccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999 9999 9999
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=6.2e-255 Score=2261.66 Aligned_cols=949 Identities=50% Similarity=0.929 Sum_probs=825.1
Q ss_pred CCccccccccC---CceEEEeecCcCCC-CCCCccCCCcccc--cCCcccccCCCCeeecccCCCCcccchhhhhhhhcC
Q 001574 5 PMGSFVAGSHS---RNELHVMHANEEQR-PPTRQSGSKLCRV--CGDEIGLKENGELFVACHECGFPVCRPCYEYERSEG 78 (1051)
Q Consensus 5 ~~~~~~~g~~~---r~~~~~~~~~~~~~-~~~~~~~~~~C~i--Cgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG 78 (1051)
.+++||||||| |+|+|++..|+++. +++++.+++.|.+ |+.+++.||+|++..+| ||+|+|||+||-++.++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 166 (1135)
T PLN02248 88 VSNSIFTGGFNSVTRAHLMDKVIESEVSHPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG 166 (1135)
T ss_pred cccceecCCCCccchhhhhhcccccccCCcccCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC
Confidence 57899999999 99999999999886 8999999999999 99999999999999999 999999999999999996
Q ss_pred CCCCCCCccccccccCccccCCCCcCCCCccchhhhccCCCCCCCCccccccccCCCCCCCCCCcccCCCCCcccCCCCC
Q 001574 79 SQCCPGCNTRYKRHKGCARVAGDEEDNFDDDFEDEFKNHYDNQDHDQHHHVTTTRSENGDNNQNQFLNGPGSFAGSVAGK 158 (1051)
Q Consensus 79 ~~~CPqCkt~Ykr~kgsprv~gd~ee~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1051)
+.||+||++||.+ |+++++.|.....+.++... .+.+.+ +-.. .....++.. .+.++++|+
T Consensus 167 -~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~--~~~~~~~~~--~~~~~~~~~ 227 (1135)
T PLN02248 167 -GICPGCKEPYKVT--------DLDDEVPDESSGALPLPPPG-----GSKMDR-RLSL--MKSNSLLMR--SQTGDFDHN 227 (1135)
T ss_pred -CCCCCCccccccc--------cccccccccccccccCCCCC-----Cccccc-cccc--ccccchhcc--CCCCCCCCc
Confidence 7999999999875 43333322111222221100 011110 0000 000011111 224788999
Q ss_pred c--ccCCCC-CCcchhhhHhHHHHHHHhhhccccccCCCCCCCCCCCchhhhhhhcCCCeeEeecCCCCcchhHHHHHHH
Q 001574 159 D--FEGDKE-GYSSAEWQERVEKWKIRQEKRGLVTKDDGGNDQGDGDDDFLMAEARQPLWRKVPIPSSKINPYRIVIILR 235 (1051)
Q Consensus 159 ~--~~~~~~-~~g~~~~~~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~v~~ 235 (1051)
+ ++++++ ||||+.|+++.. .|+++++ . ....+|+++++||+||+++++++|+|||++++++
T Consensus 228 ~w~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~-~-~~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~r 291 (1135)
T PLN02248 228 RWLFETKGTYGYGNAVWPKDDG--------------YGDDGGG-G-GPGEFMDKPWRPLTRKVKISAAILSPYRLLILIR 291 (1135)
T ss_pred eeeeecccccccccccCccccc--------------cCCCCCc-c-ccccccccCCCCceeeeecCcccccHHHHHHHHH
Confidence 9 899998 999999998632 1211111 1 1125799999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhhhhhhcCC-----CCCCCCCeeE
Q 001574 236 LFILAFFLRFRILTPAYDAFPLWIISVICEVWFAFSWILDQFPKWFPITRETYLDRLSIRFEREG-----EPNRLAPVDV 310 (1051)
Q Consensus 236 l~~l~~yl~~Ri~~~~~~~~~lw~~~~~~Ei~f~~~wil~q~~kw~Pv~R~t~~drL~~r~~~~~-----~~~~lp~VDv 310 (1051)
|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|.||+|||++|||.|+ ++++||+|||
T Consensus 292 lv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDv 371 (1135)
T PLN02248 292 LVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLCPINRATDLAVLKEKFETPSPSNPTGRSDLPGIDV 371 (1135)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhccccccccccccCHHHHHHHhccccccCCCCcccCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999998654 3678999999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCcccccccc
Q 001574 311 FVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEFYFSQK 390 (1051)
Q Consensus 311 fV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~YFs~k 390 (1051)
||||+||.||||++|+||||||||+|||+|||+|||||||+++||||||.|||+|||+||||||||+|||||||+||++|
T Consensus 372 FV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf~AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~ 451 (1135)
T PLN02248 372 FVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLTFEAMAEAASFARIWVPFCRKHDIEPRNPESYFSLK 451 (1135)
T ss_pred EeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhh------------------------------hcCCCcccccccCC
Q 001574 391 IDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSK------------------------------AQKKPEEGWVMQDG 440 (1051)
Q Consensus 391 ~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k------------------------------~~~vp~~~w~m~dg 440 (1051)
.|+++++.+|+|++|||+|||||||||+|||+|++. .+|+|+++| |+||
T Consensus 452 ~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~~~~~rs~~~n~~~e~~~~~~~~~~~~~~~~e~~~~~~~~w-m~dg 530 (1135)
T PLN02248 452 RDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYNAREEIKAKKKQRESGGGDPSEPLKVPKATW-MADG 530 (1135)
T ss_pred CCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhhhccccccccchhHHHHhhhhhhhhccccccccccccccee-eccC
Confidence 999999999999999999999999999999999641 256789999 9999
Q ss_pred CCCCCCC--------CCCCchhhHhhccCCC------------Cccc--cCCCCCcEEEEeccCCCCCCCCCccchhhHH
Q 001574 441 TPWPGNN--------TRDHPGMIQVYLGSEG------------ALDV--EGKELPRLVYVSREKRPGYNHHKKAGAMNAL 498 (1051)
Q Consensus 441 ~~w~g~~--------~rdHp~iiqv~l~~~g------------~~d~--~~~~lP~lvYvsRekrpg~~hh~KAGalNal 498 (1051)
|+|||+| ++|||+||||||++++ ..|. .+++||+||||||||||||+||+||||||+|
T Consensus 531 t~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~e~~~g~~~~~~~~d~~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNAL 610 (1135)
T PLN02248 531 THWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMGSADDENLIDFTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNAL 610 (1135)
T ss_pred CcCCCcccCcccCCCCCCCcceeEEeccCCCcccccCcccccccccccccccccceeEEEecccCCCCCcccccchhhhH
Confidence 9999984 4699999999998654 1232 3448999999999999999999999999999
Q ss_pred HHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCccccCCCCCCcccchhhhHHHhhcccccCC
Q 001574 499 VRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGI 578 (1051)
Q Consensus 499 lrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~nid~~D~y~n~~~vffdi~~~glDg~ 578 (1051)
+||||+|||||||||||||||+|||++||+||||||||+ |+++|||||||+|||+|++|||+||++||||++|+|+||+
T Consensus 611 lRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~-g~~vAfVQFPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGl 689 (1135)
T PLN02248 611 VRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRG-GDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGL 689 (1135)
T ss_pred HHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCC-CCceEEEcCCcccCCCCCCCccCCcceeeeeeeecccccc
Confidence 999999999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred CCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccC
Q 001574 579 QGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRK 658 (1051)
Q Consensus 579 qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1051)
|||+||||||+|||+||||++||+.++.+. +|++||+.++++++.+..
T Consensus 690 qGP~YvGTGCffRR~ALYG~~pp~~~~~~~--------~~~~~~~~~~~~~~~~~~------------------------ 737 (1135)
T PLN02248 690 QGPVYVGTGCLFRRIALYGFDPPRAKEHSG--------CFGSCKFTKKKKKETSAS------------------------ 737 (1135)
T ss_pred CCccccccCceeeehhhcCcCCcccccccc--------cccccccccccccccccc------------------------
Confidence 999999999999999999999986543321 244566655443321100
Q ss_pred CCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhcCCcHHHHhhhhhhc-CCCC-------------------CCCCch
Q 001574 659 GSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKED-GGLP-------------------EGTNST 718 (1051)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~-GG~~-------------------~~~~~~ 718 (1051)
...+ ++++++ + ..++.+.++++||+|..|++|+.... .|-+ ....++
T Consensus 738 ~~~~---~~~~~~-----~-----~~~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1135)
T PLN02248 738 EPEE---QPDLED-----D-----DDLELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPSVKNGRPPGALTVPREPLDA 804 (1135)
T ss_pred cccc---cccccc-----c-----chhhhhhhhhhhccchhhhhhhHHHhhcccccccccccccccccccccccccCCcH
Confidence 0000 111110 1 01345678899999999999985322 2211 122356
Q ss_pred hHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCCCCcccccCCCCHHHHHHHhhhhhccc
Q 001574 719 SLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGS 798 (1051)
Q Consensus 719 ~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWa~G~ 798 (1051)
++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|++.+|.|+||+|+.++++||+|||+|+
T Consensus 805 ~~l~eA~~V~sC~YE~~T~WG~evG~~YGSvTEDv~TGlrLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~ 884 (1135)
T PLN02248 805 ATVAEAISVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGS 884 (1135)
T ss_pred HHHHHHHhhcccccccCCchhhhcCeeecceechHHHHHHHHhcCCceEeCCCChHhhcCCCCCCHHHHHHHHHHHhhch
Confidence 89999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred hhhhhhccCccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcchhccchHHHHHHHHHHHHHHHHH
Q 001574 799 VEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTLPAICLLTGKFIIPTLNNLASIWFLALFLSIIVTG 878 (1051)
Q Consensus 799 iQil~sk~~Pl~~g~~~~Lt~~QRL~Yl~~~ly~l~sl~~liylllPil~LltG~~iip~~s~~~~~~fi~lfls~~~~~ 878 (1051)
+||++++++|+++ .++|+++|||+|+++++||++++++++|+++|++||++|++++|..+..++++++.+++++++++
T Consensus 885 lQIf~sr~~Pll~--~~~Lsl~QRL~Yl~~~lypf~Slp~liY~llP~l~LLtGi~~~p~~~~~fl~yll~l~l~~~~~s 962 (1135)
T PLN02248 885 VEIFFSRNNALLA--SRRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIITITLCLLA 962 (1135)
T ss_pred HHHHhccCCcccc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999985 47999999999999999999999999999999999999999999876555555556678889999
Q ss_pred HhhheecCcccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCcCCCCcc---cccceeeeccccchHHHHH
Q 001574 879 VLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKSAEDE---EFGELYLFKWTTLLIPPTT 955 (1051)
Q Consensus 879 lLe~~wsG~sl~~wWr~e~~W~I~~vsa~lfav~~aLlk~L~g~~~~F~VTpKg~~~~---~~~~ly~f~ws~l~iP~~t 955 (1051)
++|++|+|+++++|||+||||+|.+++++++|++++++|+|++++++|+||+|..+++ +++++|+|+||++++|+++
T Consensus 963 llE~~wsGvsl~~WWrnQq~W~I~~tSA~L~A~l~aiLKvLggs~~~F~VTsK~~~~d~~~~~a~ly~f~wS~L~iP~tt 1042 (1135)
T PLN02248 963 VLEIKWSGITLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSAGDDEDDEFADLYIVKWTSLMIPPIT 1042 (1135)
T ss_pred HHHHhhccccHHHHhhhhheeeehhhHHHHHHHHHHHHHHhcCccccceeCCcccccccccccchheecCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987643 5788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhheeecCC
Q 001574 956 LIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLLWVRIDPF 1035 (1051)
Q Consensus 956 Llllnlvaiv~Gi~r~i~~~~~~~~~l~g~l~~~~Wvlvnl~Pflkgl~gR~~r~P~~v~~~s~lla~~f~~l~v~i~~~ 1035 (1051)
++++|++|+++|++|++.++++.|+.+++++|+++|+++|+|||+||||||++|+||||++||++|++++|||||+|+||
T Consensus 1043 l~llNLvAivvGv~R~i~g~~~~~~~l~g~l~~s~Wvv~~lyPf~kGL~gR~gr~P~iv~v~s~ll~~~~sll~v~~~~~ 1122 (1135)
T PLN02248 1043 IMMVNLIAIAVGVSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLLSITISLLWVAISPP 1122 (1135)
T ss_pred HHHHHHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeehHHHHHHHHHHHHHHheEeccc
Confidence 99999999999999999877778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 001574 1036 LPK 1038 (1051)
Q Consensus 1036 ~~~ 1038 (1051)
+..
T Consensus 1123 ~~~ 1125 (1135)
T PLN02248 1123 SGA 1125 (1135)
T ss_pred cCc
Confidence 854
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=1.1e-221 Score=1927.86 Aligned_cols=718 Identities=73% Similarity=1.300 Sum_probs=682.6
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCccccc
Q 001574 308 VDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEFYF 387 (1051)
Q Consensus 308 VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~YF 387 (1051)
|||||||+||.||||++|+|||||+||+|||+|||+|||||||+++||||||.|||+|||+||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccCCCCccc
Q 001574 388 SQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDV 467 (1051)
Q Consensus 388 s~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~ 467 (1051)
+++.|+++++.+|+|++|||+|||||||||+|||+++++.+++|+++|+|+||++|||++++|||+||||+++++++.|.
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEec
Q 001574 468 EGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQF 547 (1051)
Q Consensus 468 ~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~ 547 (1051)
+|++||+||||||||||+++||+||||||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCcccchhhhHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCcc
Q 001574 548 PQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRK 627 (1051)
Q Consensus 548 PQ~F~nid~~D~y~n~~~vffdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~ 627 (1051)
||+|+|+|+||+|+||+++||+++|+|+||+|||+||||||+|||+||||++||...+.++.++ ++|+||++++|
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~-----~~~~~c~~~~k 315 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTC-----CCCSCCFGRRK 315 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCcce-----eeeecccCCcc
Confidence 9999999999999999999999999999999999999999999999999999998777665543 34455555544
Q ss_pred ccccccCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhcCCcHHHHhhhhhh
Q 001574 628 SKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKE 707 (1051)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e 707 (1051)
+++.++.. +++..++ .+++.+++++++++|++++.++ |++..+++++++++||+|++|++|+..+
T Consensus 316 ~~~~~~~~-----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~FG~S~~fi~S~~~~ 380 (720)
T PF03552_consen 316 KKKSKKKP-----------KKRASKR---RESSSPIFALEDIEEGAEGSDE-ERSSLMSQKELEKKFGQSPEFIASTLMA 380 (720)
T ss_pred cccccccc-----------hhccccc---cccccccccccccccccccchh-hhhhcchhHHHHHHhcCCHHHHHHHHHH
Confidence 44332221 1111122 4567889999999999887554 7889999999999999999999999999
Q ss_pred cCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCCCCcccccCCCCHHHH
Q 001574 708 DGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDR 787 (1051)
Q Consensus 708 ~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~af~G~aP~tl~~~ 787 (1051)
.|+.+.+.+++++++||+||+||+||++|+|||||||+||++|||+.||++||++||||+||+|+++||.|.||+|+.+.
T Consensus 381 ~~~~~~~~~~~~~L~EA~~V~sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~ 460 (720)
T PF03552_consen 381 QGGVPRSPSPASLLEEAIHVASCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDR 460 (720)
T ss_pred hcCCCCCCChHHHHHHHHHHhcCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccchhhhhhccCccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcchhccchHHHHHH
Q 001574 788 LHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTLPAICLLTGKFIIPTLNNLASIWF 867 (1051)
Q Consensus 788 l~QR~RWa~G~iQil~sk~~Pl~~g~~~~Lt~~QRL~Yl~~~ly~l~sl~~liylllPil~LltG~~iip~~s~~~~~~f 867 (1051)
+.|++|||.|++||+++||||+|+|+.++|+++||++|++.++|+++|+|.++|+++|++||++|++++|++++.++++|
T Consensus 461 L~Q~~RWA~GslEI~fSr~~Pl~~g~~~rL~~lQrLaY~~~~~ypl~Sipll~Y~~lPalcLLtG~~i~Pk~s~~~~~~f 540 (720)
T PF03552_consen 461 LHQVKRWATGSLEIFFSRHCPLWYGYGGRLKFLQRLAYLNYMLYPLTSIPLLCYCFLPALCLLTGIFIFPKVSSPWFIYF 540 (720)
T ss_pred ceeeeeEeeeeEeeehhcCCchhccCCCCCcHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhCCCcccCccccchhHHH
Confidence 99999999999999999999999987789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhheecCcccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCcCCCC--cccccceeeec
Q 001574 868 LALFLSIIVTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKSAE--DEEFGELYLFK 945 (1051)
Q Consensus 868 i~lfls~~~~~lLe~~wsG~sl~~wWr~e~~W~I~~vsa~lfav~~aLlk~L~g~~~~F~VTpKg~~--~~~~~~ly~f~ 945 (1051)
+++|+++++++++|++|+|+++++||||||||+|.++++|+||++++++|+|++++++|+||+|..+ ++++.++|+|+
T Consensus 541 ~~lf~~~~~~~llE~~wsG~si~~WWrnQq~W~I~~tSa~LfAvl~~iLK~lg~s~t~F~VTsK~~dde~~~~~ely~f~ 620 (720)
T PF03552_consen 541 LALFVSIYAYSLLEFRWSGVSIREWWRNQQFWMIGGTSAHLFAVLQGILKVLGGSETSFTVTSKVSDDEDDKYAELYIFK 620 (720)
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHhhcccceeeehhhHHHHHHHHHHHHHHHcCCccceeeccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999876 44578999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Q 001574 946 WTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIF 1025 (1051)
Q Consensus 946 ws~l~iP~~tLlllnlvaiv~Gi~r~i~~~~~~~~~l~g~l~~~~Wvlvnl~Pflkgl~gR~~r~P~~v~~~s~lla~~f 1025 (1051)
||++++|++||+++|++|+++|+++++++++++|+++++++|+++|+++|+|||+||||||++|+||||++||++||++|
T Consensus 621 wS~LfiP~tTllilNLva~v~Gi~r~i~~g~~~~g~l~g~lf~~~wVvv~lyPf~kGL~~R~~r~P~~v~v~S~lla~i~ 700 (720)
T PF03552_consen 621 WSPLFIPPTTLLILNLVAFVVGISRAINSGYGSWGPLLGQLFFSFWVVVHLYPFLKGLFGRKDRIPTSVIVWSVLLASIF 700 (720)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhhHHHHhhhcccCCcceeehHHHHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HhhheeecCCCCCCCCCccc
Q 001574 1026 SLLWVRIDPFLPKQKGPLLK 1045 (1051)
Q Consensus 1026 ~~l~v~i~~~~~~~~~~~~~ 1045 (1051)
+||||+||||+++++||+++
T Consensus 701 ~llwv~i~~~~~~~~~~~~~ 720 (720)
T PF03552_consen 701 SLLWVRIDPFLAKTTGPDLK 720 (720)
T ss_pred HHHheecccCcCCCCCCCCC
Confidence 99999999999999999875
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=4.5e-204 Score=1782.21 Aligned_cols=725 Identities=35% Similarity=0.628 Sum_probs=656.5
Q ss_pred hcCCCeeEeecCCCCcchhHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHhhccccccccccchh
Q 001574 210 ARQPLWRKVPIPSSKINPYRIVIILRLFILAFFLRFRILTPAYDAFPLWIISVICEVWFAFSWILDQFPKWFPITRETYL 289 (1051)
Q Consensus 210 ~~~pl~~~~~~~~~~~~~yR~~~v~~l~~l~~yl~~Ri~~~~~~~~~lw~~~~~~Ei~f~~~wil~q~~kw~Pv~R~t~~ 289 (1051)
+.+||+++++++++. ||++.+++++++++||+||++|+++++ ++|+++++||+||+|+|+|+|++||+|++|.|+|
T Consensus 7 ~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p 82 (756)
T PLN02190 7 SLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPYP 82 (756)
T ss_pred CCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCCc
Confidence 457999999999985 899999999999999999999999887 6899999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhh
Q 001574 290 DRLSIRFEREGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRW 369 (1051)
Q Consensus 290 drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~W 369 (1051)
|||++|++ +||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||+|+||||||.|||+|||+|
T Consensus 83 ~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~W 156 (756)
T PLN02190 83 DRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIW 156 (756)
T ss_pred HHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhh
Confidence 99999984 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCCcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCC--CCCCCCC
Q 001574 370 VPFCKKYIIEPRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDG--TPWPGNN 447 (1051)
Q Consensus 370 vPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg--~~w~g~~ 447 (1051)
|||||||||||||||+||+++.+ ++.+++|++|||+|||||||||+||++.. +...|.++|+ .+|+++.
T Consensus 157 vPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~~ 227 (756)
T PLN02190 157 VPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNTK 227 (756)
T ss_pred cccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCCC
Confidence 99999999999999999998643 34568999999999999999999999864 3456777666 7899999
Q ss_pred CCCCchhhHhhccCCCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHH
Q 001574 448 TRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVR 527 (1051)
Q Consensus 448 ~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr 527 (1051)
++|||+||||+++++|+ +.+|++||+|||||||||||++||+||||||+|+||||+|||||||||||||||+|||+++|
T Consensus 228 ~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r 306 (756)
T PLN02190 228 PNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVR 306 (756)
T ss_pred CCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHH
Confidence 99999999999999775 45789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCC-CcEEEEecCccccCCCCCCcccchhhhHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCC
Q 001574 528 EAMCFLMDPQLG-KKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKR 606 (1051)
Q Consensus 528 ~amcf~~Dp~~g-~~vafVQ~PQ~F~nid~~D~y~n~~~vffdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~ 606 (1051)
+||||||||+.+ +++|||||||+|+ |+|+||++||||++|+|+||+|||+||||||+|||+||||++||...+.
T Consensus 307 ~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~~ 381 (756)
T PLN02190 307 QAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLEDD 381 (756)
T ss_pred HhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCccccccc
Confidence 999999999744 5899999999998 8899999999999999999999999999999999999999988743221
Q ss_pred CCCCCCCCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhh
Q 001574 607 PKMTCDCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMS 686 (1051)
Q Consensus 607 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1051)
... . +.+ ++ ...+
T Consensus 382 ~~~------------------------~-------------------------~~~-----------------~~-~~~~ 394 (756)
T PLN02190 382 GSL------------------------S-------------------------SVA-----------------TR-EFLA 394 (756)
T ss_pred ccc------------------------c-------------------------ccc-----------------cc-cccc
Confidence 100 0 000 00 0233
Q ss_pred hhhhhhhcCCcHHHHhhhhhhcCCCCC-CCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcE
Q 001574 687 QKNFEKRFGQSPVFIASTLKEDGGLPE-GTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWK 765 (1051)
Q Consensus 687 ~~~~~~~fG~s~~f~~s~l~e~GG~~~-~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWr 765 (1051)
+.+++++||+|+.|++|+..+..+.+. ..+.+++++||++|+||+||++|+||+||||.|+|+|||+.||++||++|||
T Consensus 395 ~~~~~~~fg~s~~f~~s~~~~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWr 474 (756)
T PLN02190 395 EDSLAREFGNSKEMVKSVVDALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWT 474 (756)
T ss_pred hhhhhhhcCCcHHHHHHHHHHhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCcccceeechHHHHHHHHccCCc
Confidence 456778999999999999876644332 3345789999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCcccccCCCCHHHHHHHhhhhhccchhhhhhccCccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHH
Q 001574 766 SVYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTLP 845 (1051)
Q Consensus 766 svY~~p~~~af~G~aP~tl~~~l~QR~RWa~G~iQil~sk~~Pl~~g~~~~Lt~~QRL~Yl~~~ly~l~sl~~liylllP 845 (1051)
|+||+|+++||.|.+|+++.+.+.||+||++|++||+++|+||++++..++|+++||++|++.++ |++++|+++|+++|
T Consensus 475 SvY~~p~~~AFlG~aP~~l~~~L~Q~~RWa~G~lqI~fsr~nPl~~g~~~~L~l~QRLaYl~~~~-~~~sip~l~Y~~lP 553 (756)
T PLN02190 475 SSYISPDPPAFLGSMPPGGPEAMVQQRRWATGLIEVLFNKQSPLIGMFCRKIRFRQRLAYLYVFT-CLRSIPELIYCLLP 553 (756)
T ss_pred eEecCCCchhhcCcCCCChHHHhhhhhhHhhhhHHHHHhcCCCceeccCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999976668999999999999988 99999999999999
Q ss_pred HHHHHhCCcchhccchHHHHHHHHHHHHHHHHHHhhheecCcccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001574 846 AICLLTGKFIIPTLNNLASIWFLALFLSIIVTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTN 925 (1051)
Q Consensus 846 il~LltG~~iip~~s~~~~~~fi~lfls~~~~~lLe~~wsG~sl~~wWr~e~~W~I~~vsa~lfav~~aLlk~L~g~~~~ 925 (1051)
++||++|++++|.. .++++++++++++.+++++|++|+|+++++||||||||+|.++|+|+||++++++|+|++++++
T Consensus 554 ~l~Ll~g~~i~P~~--~~~~~~~~l~~~~~~~~l~E~~~sG~s~~~WWnnqr~w~I~~~sa~l~a~~~~~lK~lg~s~~~ 631 (756)
T PLN02190 554 AYCLLHNSALFPKG--VYLGIIVTLVGMHCLYTLWEFMSLGFSVQSWYVSQSFWRIKATSSWLFSIQDIILKLLGISKTV 631 (756)
T ss_pred HHHHHcCCccccCc--cHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHhhhheEEeecchHHHHHHHHHHHHHhccccce
Confidence 99999999999975 4566778888899999999999999999999999999999999999999999999999999999
Q ss_pred eeeCcCCCC-------------c--ccc--cceeeeccccchHHHHHHHHHHHHHHHHHHHHhHh---cCCCCCcchHHH
Q 001574 926 FTVTSKSAE-------------D--EEF--GELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAIN---NGYGSWGPLFGK 985 (1051)
Q Consensus 926 F~VTpKg~~-------------~--~~~--~~ly~f~ws~l~iP~~tLlllnlvaiv~Gi~r~i~---~~~~~~~~l~g~ 985 (1051)
|+||+|..+ + +++ +++|+|+||++++|+++++++|++|++.|+++.+. ++.+.|+ .+++
T Consensus 632 F~vTsK~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~S~lfiP~tti~~~Nl~a~~~g~~~~~~~~~s~~~~~~-~l~q 710 (756)
T PLN02190 632 FIVTKKTMPETKSGSGSGPSQGEDDGPNSDSGKFEFDGSLYFLPGTFIVLVNLAALAGFLVGLQRSSYSHGGGGS-GLAE 710 (756)
T ss_pred EEEeeccccccccccccccccccccchhhhcceeEecceehHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcccc-cHHH
Confidence 999999643 1 112 57899999999999999999999999988887643 3334455 4599
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCCcchHHHHHHHHHHHHHhhhe
Q 001574 986 LFFAFWVIVHLYPFLKGLMGRQ-NRTPTIVVLWSVLLASIFSLLWV 1030 (1051)
Q Consensus 986 l~~~~Wvlvnl~Pflkgl~gR~-~r~P~~v~~~s~lla~~f~~l~v 1030 (1051)
+++++|+++|+|||+||||+|. +|+|++|+++|++|+.+|+++.|
T Consensus 711 ~~~~~~vv~~~~P~~~gl~~kdkg~iP~s~~~~s~~l~~~f~~~~~ 756 (756)
T PLN02190 711 ACGCILVVMLFLPFLKGLFEKGKYGIPLSTLSKAAFLAVLFVVFSV 756 (756)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999775 59999999999999999999875
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=2.3e-195 Score=1716.82 Aligned_cols=706 Identities=36% Similarity=0.692 Sum_probs=651.2
Q ss_pred hhcCCCeeEeecCCCCcchhHHHHHHHHHHHHHHHHHHhhccCCCc-hhHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 001574 209 EARQPLWRKVPIPSSKINPYRIVIILRLFILAFFLRFRILTPAYDA-FPLWIISVICEVWFAFSWILDQFPKWFPITRET 287 (1051)
Q Consensus 209 ~~~~pl~~~~~~~~~~~~~yR~~~v~~l~~l~~yl~~Ri~~~~~~~-~~lw~~~~~~Ei~f~~~wil~q~~kw~Pv~R~t 287 (1051)
...+||+++++++++. +||+++++++++++++|+||+++.+.+. .|+|+++++||+||+|+|+|+|++||+||+|.|
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 3567999999999886 5999999999999999999999977665 789999999999999999999999999999999
Q ss_pred hhhhhhhhhhcCCCCCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhh
Q 001574 288 YLDRLSIRFEREGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFAR 367 (1051)
Q Consensus 288 ~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~ 367 (1051)
|+|||+++++ .++||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||+|+||||||.|||+|||
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999997664 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCCcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCC-----CC
Q 001574 368 RWVPFCKKYIIEPRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDG-----TP 442 (1051)
Q Consensus 368 ~WvPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg-----~~ 442 (1051)
+||||||||+|||||||+||+++. ++|++|||+|||||||||+|||+++++ +++|++ |.|.++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~~--------~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSNS--------HSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccCC--------CccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 999999999999999999999983 468899999999999999999999976 889877 655444 78
Q ss_pred CCCCC-CCCCchhhHhhccCCCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCC
Q 001574 443 WPGNN-TRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLN 521 (1051)
Q Consensus 443 w~g~~-~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~ 521 (1051)
|++|. ++|||+||||+++++++.|.+|++||+|||||||||||++||+||||||+++||||++||||||||||||||+|
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n 312 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSN 312 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCC
Confidence 98775 68999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhcCCCCCCcEEEEecCccccCCCCCCcccchhhhHHHhhcccccCCCCceeeccCceehhhhhcCCCCC
Q 001574 522 NSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPP 601 (1051)
Q Consensus 522 ~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~nid~~D~y~n~~~vffdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~ 601 (1051)
||++||+|||||+||+.++++|||||||+|+|++++|+|+|++++|||++|+|+||+|||+||||||+|||+||||..+.
T Consensus 313 ~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~ 392 (734)
T PLN02893 313 DPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSS 392 (734)
T ss_pred chhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997431
Q ss_pred CCCCCCCCCCCCCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhh
Q 001574 602 VSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEK 681 (1051)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1051)
... ++++|
T Consensus 393 ~~~--------------------------------------------------------------~~~~~---------- 400 (734)
T PLN02893 393 LIL--------------------------------------------------------------PEIPE---------- 400 (734)
T ss_pred ccc--------------------------------------------------------------hhhhh----------
Confidence 000 00000
Q ss_pred hhhhhhhhhhhhcCCcHHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhh
Q 001574 682 SSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHC 761 (1051)
Q Consensus 682 ~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~ 761 (1051)
+++ .++...++.+.++++||++|+||.||++|+||++|||.|+|+|||+.||++||+
T Consensus 401 ------------~~~-----------~~~~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~ 457 (734)
T PLN02893 401 ------------LNP-----------DHLVDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQC 457 (734)
T ss_pred ------------ccc-----------ccccccccchHHHHHHhhhccccccccCCccccccceEeccccccHHHHHHHHh
Confidence 000 011123445678999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCcccccCCCCHHHHHHHhhhhhccchhhhhhccCccccccCCCCCcccchhhhhhhhhhhhHHHHHHH
Q 001574 762 RGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAY 841 (1051)
Q Consensus 762 rGWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWa~G~iQil~sk~~Pl~~g~~~~Lt~~QRL~Yl~~~ly~l~sl~~liy 841 (1051)
+||||+|++|++.+|.|++|+|+.++++||+|||+|++||+++|+||+++|. ++|+++||++|++.++||++++++++|
T Consensus 458 ~GWrSvY~~p~~~af~G~aP~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~-~~L~~~Qrl~Y~~~~~~~~~slp~liY 536 (734)
T PLN02893 458 EGWKSIFCNPKRPAFLGDSPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGV-KSIGLLMGLGYAHYAFWPIWSIPITIY 536 (734)
T ss_pred cCCcEEecCCCchhhccCCCCCHHHHHHHHHHHHhhhHHHHhhccCchhhcc-cCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999998888899999999999999999999999999999999999764 789999999999999999999999999
Q ss_pred HHHHHHHHHhCCcchhccchHHHHHHHHHHHHHHHHHHhhheecCcccccccccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 001574 842 CTLPAICLLTGKFIIPTLNNLASIWFLALFLSIIVTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAG 921 (1051)
Q Consensus 842 lllPil~LltG~~iip~~s~~~~~~fi~lfls~~~~~lLe~~wsG~sl~~wWr~e~~W~I~~vsa~lfav~~aLlk~L~g 921 (1051)
+++|++||++|++++|.++..++++++.+++++++++++|++|+|.++++|||+||+|+|.++++++++++++++|.|++
T Consensus 537 ~~~P~l~Ll~g~~i~p~~s~~~f~~yi~l~~s~~~~~~lE~~~sG~t~~~WWn~qr~w~I~~~ss~l~a~l~~iLk~lg~ 616 (734)
T PLN02893 537 AFLPQLALLNGVSIFPKASDPWFFLYIFLFLGAYGQDLLDFLLSGGTIQRWWNDQRMWMIRGLSSFLFGLVEFLLKTLGI 616 (734)
T ss_pred HHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHHHHHHhccCccHhhhcchheeeehHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999988888888889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeCcCCCCccc---c-cceeeecc-ccchHHHHHHHHHHHHHHHHHHHHhHhcCCCCCcchHHHHHHHHHHHHHH
Q 001574 922 VDTNFTVTSKSAEDEE---F-GELYLFKW-TTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHL 996 (1051)
Q Consensus 922 ~~~~F~VTpKg~~~~~---~-~~ly~f~w-s~l~iP~~tLlllnlvaiv~Gi~r~i~~~~~~~~~l~g~l~~~~Wvlvnl 996 (1051)
++.+|+||+|+.++++ + .++|+|+| +++++|+++++++|++|+++|+++++.+ ..|+.+++++++++|+++++
T Consensus 617 s~~~F~VT~K~~~~~~~~~y~~~~f~f~~~spl~ip~ttl~llNl~a~v~Gi~~~~~~--~~~~~~~~~~~~~~~~v~~~ 694 (734)
T PLN02893 617 STFGFNVTSKVVDEEQSKRYEQGIFEFGVSSPMFLPLTTAAIINLVSFLWGIAQIFRQ--RNLEGLFLQMFLAGFAVVNC 694 (734)
T ss_pred cCCceeecCCCcccccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHH
Confidence 9999999999876432 2 48999995 8899999999999999999999999875 35778899999999999999
Q ss_pred HHHHHHHhcCCC--CCcchHHHHHHHHHHHHHhh
Q 001574 997 YPFLKGLMGRQN--RTPTIVVLWSVLLASIFSLL 1028 (1051)
Q Consensus 997 ~Pflkgl~gR~~--r~P~~v~~~s~lla~~f~~l 1028 (1051)
|||++||++|++ |+|++|++||++||.++.++
T Consensus 695 ~P~~~gl~~r~dkg~~P~~v~~~s~~l~~~~~~~ 728 (734)
T PLN02893 695 WPIYEAMVLRTDDGKLPVKITLISIVLAWALYLA 728 (734)
T ss_pred HHHHHHHhccCCCCCCCccHHHHHHHHHHHHHHH
Confidence 999999999986 99999999999999888764
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=4.3e-65 Score=620.15 Aligned_cols=491 Identities=27% Similarity=0.402 Sum_probs=382.1
Q ss_pred HHHH-HHHHHHHHHHHHHHhhccCCCc----hhHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhhhhhhcCCCCC
Q 001574 229 RIVI-ILRLFILAFFLRFRILTPAYDA----FPLWIISVICEVWFAFSWILDQFPKWFPITRETYLDRLSIRFEREGEPN 303 (1051)
Q Consensus 229 R~~~-v~~l~~l~~yl~~Ri~~~~~~~----~~lw~~~~~~Ei~f~~~wil~q~~kw~Pv~R~t~~drL~~r~~~~~~~~ 303 (1051)
|+++ ++.+++.+.|++||++.+++.. ..+.++++++|+++.++.++..+..+.|.+|...+ .+..++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPVP--------LPLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccC--------CCCCcc
Confidence 6654 5556668999999999877643 23467899999999999889888888888876432 122456
Q ss_pred CCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCc
Q 001574 304 RLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAP 383 (1051)
Q Consensus 304 ~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~P 383 (1051)
.+|.|||+||||| |++.++.+|+.+++++|||.+|+.|||+|||+.+-|.....+++
T Consensus 129 ~~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~-------------------- 185 (713)
T TIGR03030 129 EWPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQ-------------------- 185 (713)
T ss_pred cCCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhh--------------------
Confidence 7999999999999 99999999999999999999999999999998874432221111
Q ss_pred ccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccCCC
Q 001574 384 EFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEG 463 (1051)
Q Consensus 384 e~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g 463 (1051)
.| +.+-+..+++++++
T Consensus 186 --------------------~~-------~~~~~~~~~~l~~~------------------------------------- 201 (713)
T TIGR03030 186 --------------------AE-------AAQRREELKEFCRK------------------------------------- 201 (713)
T ss_pred --------------------hh-------hhhhHHHHHHHHHH-------------------------------------
Confidence 00 00001112223321
Q ss_pred CccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhh-cCCCCCCcE
Q 001574 464 ALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGKKL 542 (1051)
Q Consensus 464 ~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~-~Dp~~g~~v 542 (1051)
.++.|+.|++ ++|+||||||++++. ++||||+++||||+ ++|++|++++++| .|| ++
T Consensus 202 ---------~~v~yi~r~~----n~~~KAgnLN~al~~----a~gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp----~v 259 (713)
T TIGR03030 202 ---------LGVNYITRPR----NVHAKAGNINNALKH----TDGELILIFDADHV-PTRDFLQRTVGWFVEDP----KL 259 (713)
T ss_pred ---------cCcEEEECCC----CCCCChHHHHHHHHh----cCCCEEEEECCCCC-cChhHHHHHHHHHHhCC----CE
Confidence 1378999988 788999999999995 79999999999998 7899999999988 588 89
Q ss_pred EEEecCccccCCCCC-------CcccchhhhHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCC
Q 001574 543 CYVQFPQRFDGIDRH-------DRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWP 615 (1051)
Q Consensus 543 afVQ~PQ~F~nid~~-------D~y~n~~~vffdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~ 615 (1051)
++||+||.|+|.|+. +++.+++..||..+++|+|.+++++++||++++||+||.
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~------------------- 320 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREALD------------------- 320 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHHH-------------------
Confidence 999999999998753 345677889999999999999999999999999999872
Q ss_pred CCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhcC
Q 001574 616 SWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFG 695 (1051)
Q Consensus 616 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG 695 (1051)
T Consensus 321 -------------------------------------------------------------------------------- 320 (713)
T TIGR03030 321 -------------------------------------------------------------------------------- 320 (713)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcHHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCCCCc
Q 001574 696 QSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPA 775 (1051)
Q Consensus 696 ~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~a 775 (1051)
++||+++ ++++||++++++|+++||+++|++...
T Consensus 321 -----------~iGGf~~---------------------------------~~vtED~~l~~rL~~~G~~~~y~~~~~-- 354 (713)
T TIGR03030 321 -----------EIGGIAG---------------------------------ETVTEDAETALKLHRRGWNSAYLDRPL-- 354 (713)
T ss_pred -----------HcCCCCC---------------------------------CCcCcHHHHHHHHHHcCCeEEEecccc--
Confidence 3576654 589999999999999999999996443
Q ss_pred ccccCCCCHHHHHHHhhhhhccchhhhhhccCccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcc
Q 001574 776 FKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTLPAICLLTGKFI 855 (1051)
Q Consensus 776 f~G~aP~tl~~~l~QR~RWa~G~iQil~sk~~Pl~~g~~~~Lt~~QRL~Yl~~~ly~l~sl~~liylllPil~LltG~~i 855 (1051)
++|++|+|++++++||.||++|++|+++. .+|++ .+++++.||++|+++++||+.++++++|+++|++++++|+.+
T Consensus 355 ~~g~~p~sl~~~~~Qr~RWa~G~~qi~~~-~~pl~---~~gl~~~qrl~y~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~ 430 (713)
T TIGR03030 355 IAGLAPETLSGHIGQRIRWAQGMMQIFRL-DNPLL---KRGLSFPQRLCYLNAMLFWFFPLPRVIFLTAPLAYLFFGLNI 430 (713)
T ss_pred ccccCCCCHHHHHHHHHHHhcChHHHHhh-hCccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 38999999999999999999999999975 48997 689999999999999999999999999999999999999998
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHhhhe-ecCcccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCcCCCC
Q 001574 856 IPTLNNLASIWFLALFLSIIVTGVLELR-WSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKSAE 934 (1051)
Q Consensus 856 ip~~s~~~~~~fi~lfls~~~~~lLe~~-wsG~sl~~wWr~e~~W~I~~vsa~lfav~~aLlk~L~g~~~~F~VTpKg~~ 934 (1051)
++..... +++.++++++.+++.+. ..|.....||+ |.|-.+ ...+.+...+.+.+++++.+|+||||++.
T Consensus 431 ~~~~~~~----~~~~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~F~VT~Kg~~ 501 (713)
T TIGR03030 431 FVASALE----ILAYALPHMLHSLLTNSYLFGRVRWPFWS-EVYETV----LAVYLLPPVLVTLLNPKKPKFNVTPKGEL 501 (713)
T ss_pred eeCCHHH----HHHHHHHHHHHHHHHHHHHcCCeecchHH-HHHHHH----HHHHHHHHHHHHHhCcCCCCceecCCCcc
Confidence 8763221 12223444444444432 23444456774 444322 22233445566678889999999999976
Q ss_pred cccccceeeeccccchHHHHHHHHHHHHHHHHHHHHhHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 001574 935 DEEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLM 1004 (1051)
Q Consensus 935 ~~~~~~ly~f~ws~l~iP~~tLlllnlvaiv~Gi~r~i~~~~~~~~~l~g~l~~~~Wvlvnl~Pflkgl~ 1004 (1051)
.+.. .+ +++++|+++++++|++|+++|+++.+..+. ...+.+++.+|.++|++-+..++.
T Consensus 502 ~~~~----~~--~~~~~p~~~l~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~n~~~~~~~~~ 561 (713)
T TIGR03030 502 LDED----YF--SPLSRPYLILFALILAGLAFGLYRIYGYPI----ERGVLLVVLGWNLLNLILLGAALA 561 (713)
T ss_pred cccc----cc--chHHHHHHHHHHHHHHHHHHHHHHHhcCcc----ccchhhHHHHHHHHHHHHHHHHHH
Confidence 3321 01 257899999999999999999999864332 234568999999999998877773
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=3.2e-65 Score=622.43 Aligned_cols=472 Identities=26% Similarity=0.431 Sum_probs=372.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCc----hhHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhhhhhhcCCCCCCCC
Q 001574 231 VIILRLFILAFFLRFRILTPAYDA----FPLWIISVICEVWFAFSWILDQFPKWFPITRETYLDRLSIRFEREGEPNRLA 306 (1051)
Q Consensus 231 ~~v~~l~~l~~yl~~Ri~~~~~~~----~~lw~~~~~~Ei~f~~~wil~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~lp 306 (1051)
++++.+++.+.|++||++.+++.. ..+.++++++|+++.++.++..+..+.|..|.+.+ .+...+.+|
T Consensus 189 l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~~--------~~~~~~~~P 260 (852)
T PRK11498 189 LIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVP--------LPKDMSLWP 260 (852)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC--------CCcccCCCC
Confidence 456777888999999999887643 34567899999999999999888888888875321 122345789
Q ss_pred CeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCcccc
Q 001574 307 PVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEFY 386 (1051)
Q Consensus 307 ~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~Y 386 (1051)
.|||+||||| ||+.++.+||.+++++|||.+|+.|||+|||+++ |+.++|+
T Consensus 261 ~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D-------~t~~la~------------------- 311 (852)
T PRK11498 261 TVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGRE-------EFRQFAQ------------------- 311 (852)
T ss_pred cEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCCh-------HHHHHHH-------------------
Confidence 9999999999 9999999999999999999999999999999986 3222221
Q ss_pred cccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccCCCCcc
Q 001574 387 FSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALD 466 (1051)
Q Consensus 387 Fs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d 466 (1051)
+
T Consensus 312 ---------------------------------------~---------------------------------------- 312 (852)
T PRK11498 312 ---------------------------------------E---------------------------------------- 312 (852)
T ss_pred ---------------------------------------H----------------------------------------
Confidence 0
Q ss_pred ccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhh-cCCCCCCcEEEE
Q 001574 467 VEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGKKLCYV 545 (1051)
Q Consensus 467 ~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~-~Dp~~g~~vafV 545 (1051)
.++.|+.|++ +.|+||||+|++++. ++||||+++||||+ +.+++|+++|++| .|| ++|+|
T Consensus 313 ------~~v~yI~R~~----n~~gKAGnLN~aL~~----a~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP----~VglV 373 (852)
T PRK11498 313 ------VGVKYIARPT----HEHAKAGNINNALKY----AKGEFVAIFDCDHV-PTRSFLQMTMGWFLKDK----KLAMM 373 (852)
T ss_pred ------CCcEEEEeCC----CCcchHHHHHHHHHh----CCCCEEEEECCCCC-CChHHHHHHHHHHHhCC----CeEEE
Confidence 0268899877 678999999999995 79999999999997 7999999999865 788 89999
Q ss_pred ecCccccCCCCCC-------cccchhhhHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCC
Q 001574 546 QFPQRFDGIDRHD-------RYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWC 618 (1051)
Q Consensus 546 Q~PQ~F~nid~~D-------~y~n~~~vffdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~ 618 (1051)
|+||.|+|.|+.+ .+.+++..||+..++|.|++++++++||++++||+||
T Consensus 374 Qtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaL----------------------- 430 (852)
T PRK11498 374 QTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPL----------------------- 430 (852)
T ss_pred EcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHH-----------------------
Confidence 9999999987642 2457788999999999999999999999999999887
Q ss_pred cccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhcCCcH
Q 001574 619 CCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSP 698 (1051)
Q Consensus 619 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~ 698 (1051)
T Consensus 431 -------------------------------------------------------------------------------- 430 (852)
T PRK11498 431 -------------------------------------------------------------------------------- 430 (852)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCCCCcccc
Q 001574 699 VFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKG 778 (1051)
Q Consensus 699 ~f~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~af~G 778 (1051)
+++||+++ +++|||++++++|+++||+++|++...+ .|
T Consensus 431 -------eeVGGfd~---------------------------------~titED~dlslRL~~~Gyrv~yl~~~~a--~g 468 (852)
T PRK11498 431 -------DEIGGIAV---------------------------------ETVTEDAHTSLRLHRRGYTSAYMRIPQA--AG 468 (852)
T ss_pred -------HHhcCCCC---------------------------------CccCccHHHHHHHHHcCCEEEEEeccce--eE
Confidence 24688765 5899999999999999999999965443 79
Q ss_pred cCCCCHHHHHHHhhhhhccchhhhhhccCccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcchhc
Q 001574 779 SAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTLPAICLLTGKFIIPT 858 (1051)
Q Consensus 779 ~aP~tl~~~l~QR~RWa~G~iQil~sk~~Pl~~g~~~~Lt~~QRL~Yl~~~ly~l~sl~~liylllPil~LltG~~iip~ 858 (1051)
++|+|++++++||.||++|++|+++ +++|++ .++|++.||++|+++++||+.+++.++|+++|++||++|+.++..
T Consensus 469 laPesl~~~~~QR~RWarG~lQi~r-~~~pl~---~~gL~~~qRl~y~~~~l~~l~g~~~l~~l~~Pl~~l~~gi~~i~a 544 (852)
T PRK11498 469 LATESLSAHIGQRIRWARGMVQIFR-LDNPLT---GKGLKLAQRLCYANAMLHFLSGIPRLIFLTAPLAFLLLHAYIIYA 544 (852)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHH-HhChhc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChheeC
Confidence 9999999999999999999999996 468997 789999999999999999999999999999999999999887743
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhee-cCcccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCcCCCCccc
Q 001574 859 LNNLASIWFLALFLSIIVTGVLELRW-SGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKSAEDEE 937 (1051)
Q Consensus 859 ~s~~~~~~fi~lfls~~~~~lLe~~w-sG~sl~~wWr~e~~W~I~~vsa~lfav~~aLlk~L~g~~~~F~VTpKg~~~~~ 937 (1051)
.. .. ++++++++++...+...| +|.....||+ |.| ..+.++.++ ...+...+++++.+|+||+|++..++
T Consensus 545 ~~---~~-i~~y~lP~~~~~~l~~~~~~g~~r~~~ws-eiy---e~v~a~~l~-~~~~~~ll~p~~~~F~VTpKg~~~~~ 615 (852)
T PRK11498 545 PA---LM-IALFVLPHMIHASLTNSRIQGKYRHSFWS-EIY---ETVLAWYIA-PPTTVALFNPHKGKFNVTAKGGLVEE 615 (852)
T ss_pred Ch---HH-HHHHHHHHHHHHHHHHHHhcCcchHhHHH-HHH---HHHHHHHHH-HHHHHHHcCccCCCcccCCCCccccc
Confidence 21 11 122223433333333322 2332334442 322 233333333 23344467889999999999976332
Q ss_pred ccceeeeccccchHHHHHHHHHHHHHHHHHHHHhHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 001574 938 FGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGL 1003 (1051)
Q Consensus 938 ~~~ly~f~ws~l~iP~~tLlllnlvaiv~Gi~r~i~~~~~~~~~l~g~l~~~~Wvlvnl~Pflkgl 1003 (1051)
. .|+|. ++.|+++++++|++|+++|+++.+.+.. ....+.+++++|+++|++-+..++
T Consensus 616 ~----~~~~~-~~~P~~~L~~L~l~gl~~g~~r~~~~~~---~~~~~~~~~~~W~~~nl~~l~~a~ 673 (852)
T PRK11498 616 E----YVDWV-ISRPYIFLVLLNLVGVAVGIWRYFYGPP---NEILTVIVSLVWVFYNLIILGGAV 673 (852)
T ss_pred c----ceehH-HHHHHHHHHHHHHHHHHHHHHHHHhCCc---ccchhhhhhHHHHHHHHHHHHHHH
Confidence 1 25665 6789999999999999999999876421 223456799999999998776666
No 13
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=4.2e-43 Score=308.40 Aligned_cols=80 Identities=64% Similarity=1.352 Sum_probs=42.0
Q ss_pred CCCCCccCCCcccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCccccccccCccccCCCCcCCCCc
Q 001574 29 RPPTRQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRHKGCARVAGDEEDNFDD 108 (1051)
Q Consensus 29 ~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~ee~~~d 108 (1051)
+||++++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+|||||||||||||||||+|||||||+|
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gDeeedd~d 80 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGDEEEDDVD 80 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS-----S-
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCCccccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999998876
No 14
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=7.9e-35 Score=351.89 Aligned_cols=356 Identities=17% Similarity=0.237 Sum_probs=241.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCCCc-h--------hHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhhhhhh
Q 001574 227 PYRIVIILRLFILAFFLRFRILTPAYDA-F--------PLWIISVICEVWFAFSWILDQFPKWFPITRETYLDRLSIRFE 297 (1051)
Q Consensus 227 ~yR~~~v~~l~~l~~yl~~Ri~~~~~~~-~--------~lw~~~~~~Ei~f~~~wil~q~~kw~Pv~R~t~~drL~~r~~ 297 (1051)
..|+++++..++...|..|+....++.. . .+-.+.+..+.+.+.+-++..+.... .|... .+...-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~ 115 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAA 115 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCcccc
Confidence 3577777777888999999988754422 1 11122233333333333344333211 11111 1110000
Q ss_pred cCCCCCCCCCeeEEEecCCCCCCCHHHH----HHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhh
Q 001574 298 REGEPNRLAPVDVFVSTVDPLKEPPIIT----ANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFC 373 (1051)
Q Consensus 298 ~~~~~~~lp~VDvfV~T~dp~kEpp~v~----~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFC 373 (1051)
.+......|.|+|+||+|| |++..+ ..|+.|+.+.||| +++.+||+|||.++-+ +
T Consensus 116 ~~~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~-------~---------- 174 (691)
T PRK05454 116 GDPPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDI-------A---------- 174 (691)
T ss_pred cCCCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhH-------H----------
Confidence 1123456799999999999 998754 5556677789998 5899999999998721 1
Q ss_pred hhccCCCCCcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCch
Q 001574 374 KKYIIEPRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPG 453 (1051)
Q Consensus 374 kk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~ 453 (1051)
..|+ +.|+++.. +.
T Consensus 175 -----------------------------~~e~----~~~~~L~~-------~~-------------------------- 188 (691)
T PRK05454 175 -----------------------------AAEE----AAWLELRA-------EL-------------------------- 188 (691)
T ss_pred -----------------------------HHHH----HHHHHHHH-------hc--------------------------
Confidence 0011 12222221 10
Q ss_pred hhHhhccCCCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhh
Q 001574 454 MIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL 533 (1051)
Q Consensus 454 iiqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~ 533 (1051)
+ .-+++.|..|++ |.|+||||+|.+++.++ .+.+||++||||++ +.+++|++++.+|
T Consensus 189 ------~----------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs~-m~~d~L~~lv~~m 245 (691)
T PRK05454 189 ------G----------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADSL-MSGDTLVRLVRLM 245 (691)
T ss_pred ------C----------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCCC-CCHHHHHHHHHHH
Confidence 0 012689988887 67899999999999654 56799999999998 6899999999988
Q ss_pred c-CCCCCCcEEEEecCccccCCCCCCcccc----hhhhHHHhhcccccCCC--CceeeccCceehhhhhcCCCCCCCCCC
Q 001574 534 M-DPQLGKKLCYVQFPQRFDGIDRHDRYAN----RNIVFFDINMLGLDGIQ--GPVYVGTGCVFNRQALYGYDPPVSEKR 606 (1051)
Q Consensus 534 ~-Dp~~g~~vafVQ~PQ~F~nid~~D~y~n----~~~vffdi~~~glDg~q--gp~yvGTgcvfRR~ALyg~~p~~~~~~ 606 (1051)
. || ++|.||+|+.+.|.+. .++. ...++.++...|++.+| ...|.|+|+++||+|+..
T Consensus 246 ~~dP----~vGlVQt~~~~~n~~s--lfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~--------- 310 (691)
T PRK05454 246 EANP----RAGLIQTLPVAVGADT--LFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAE--------- 310 (691)
T ss_pred hhCc----CEEEEeCCccCcCCCC--HHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHH---------
Confidence 5 88 8999999999988653 2322 12344555667777665 445889999999998852
Q ss_pred CCCCCCCCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhh
Q 001574 607 PKMTCDCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMS 686 (1051)
Q Consensus 607 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1051)
|||-.
T Consensus 311 --------------~~glp------------------------------------------------------------- 315 (691)
T PRK05454 311 --------------HCGLP------------------------------------------------------------- 315 (691)
T ss_pred --------------hcCCc-------------------------------------------------------------
Confidence 11100
Q ss_pred hhhhhhhcCCcHHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEE
Q 001574 687 QKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKS 766 (1051)
Q Consensus 687 ~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrs 766 (1051)
.+.+.|+ |..++++||+++|.+|+++||++
T Consensus 316 -----------------~L~g~~p---------------------------------~~~~~LseD~~~a~~l~~~GyrV 345 (691)
T PRK05454 316 -----------------PLPGRGP---------------------------------FGGHILSHDFVEAALMRRAGWGV 345 (691)
T ss_pred -----------------cccccCC---------------------------------CCCCcccHHHHHHHHHHHCCCEE
Confidence 0011232 33468999999999999999999
Q ss_pred EEecCCCCcccccCCCCHHHHHHHhhhhhccchhhhhhccCccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHH
Q 001574 767 VYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTL 844 (1051)
Q Consensus 767 vY~~p~~~af~G~aP~tl~~~l~QR~RWa~G~iQil~sk~~Pl~~g~~~~Lt~~QRL~Yl~~~ly~l~sl~~liylll 844 (1051)
+|+ |+...+++++|+|+.++++||.||++|++|++.. +. .+++++.+|++|++.++.++.+...++++++
T Consensus 346 ~~~-pd~~~~~ee~P~tl~~~~~qr~RW~~G~lQ~l~~----l~---~~gl~~~~R~~~l~g~~~yl~~P~wll~l~l 415 (691)
T PRK05454 346 WLA-PDLPGSYEELPPNLLDELKRDRRWCQGNLQHLRL----LL---AKGLHPVSRLHFLTGIMSYLSAPLWLLFLLL 415 (691)
T ss_pred EEc-CccccccccCCCCHHHHHHHHHHHHhchHHHHHH----HH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 5543348999999999999999999999999842 33 5789999999999888877776655554443
No 15
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=1.2e-32 Score=298.71 Aligned_cols=182 Identities=20% Similarity=0.296 Sum_probs=143.6
Q ss_pred CcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhc-CCCCCCcEEEEecCccc
Q 001574 473 PRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLM-DPQLGKKLCYVQFPQRF 551 (1051)
Q Consensus 473 P~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~-Dp~~g~~vafVQ~PQ~F 551 (1051)
++++|+.|++ ++|+||||||++++..+ ++++||+++|||+. +.|++|++++.+|. || ++|.||+||+|
T Consensus 67 ~~v~~~~r~~----~~g~Kag~l~~~~~~~~--~~~~~i~~~DaD~~-~~p~~l~~~v~~~~~~~----~vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRRE----NTGRKAGNIADFCRRWG--SRYDYMVVLDADSL-MSGDTIVRLVRRMEANP----RAGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCC----CCCccHHHHHHHHHHhC--CCCCEEEEEeCCCC-CCHHHHHHHHHHHHhCC----CEEEEeCCcee
Confidence 4799999999 56799999999998422 57899999999997 79999999999886 98 89999999999
Q ss_pred cCCCCC-Ccc-cchhhhHHHhhcccccCCCC--ceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCcc
Q 001574 552 DGIDRH-DRY-ANRNIVFFDINMLGLDGIQG--PVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRK 627 (1051)
Q Consensus 552 ~nid~~-D~y-~n~~~vffdi~~~glDg~qg--p~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~ 627 (1051)
.|.+.- .+. +-.+..|..+.+.|++.+++ .+++||+.++||+||... |
T Consensus 136 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~-----------------------~----- 187 (254)
T cd04191 136 IGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEH-----------------------C----- 187 (254)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHh-----------------------c-----
Confidence 987631 110 11255666777888887654 578899999999998421 0
Q ss_pred ccccccCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhcCCcHHHHhhhhhh
Q 001574 628 SKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKE 707 (1051)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e 707 (1051)
.+.+
T Consensus 188 ----------------------------------------------------------------------------~~~~ 191 (254)
T cd04191 188 ----------------------------------------------------------------------------ALPV 191 (254)
T ss_pred ----------------------------------------------------------------------------CCcc
Confidence 0012
Q ss_pred cCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCCCCcccccCCCCHHHH
Q 001574 708 DGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDR 787 (1051)
Q Consensus 708 ~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~af~G~aP~tl~~~ 787 (1051)
+||+ .||..++++||+++|++++.+||+++|.+. ..+.++++|+|++++
T Consensus 192 i~g~------------------------------g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~-~~~~~~~~p~~~~~~ 240 (254)
T cd04191 192 LPGR------------------------------PPFGGHILSHDFVEAALMRRAGWEVRLAPD-LEGSYEECPPTLIDF 240 (254)
T ss_pred ccCC------------------------------CCCCCCeecHHHHHHHHHHHcCCEEEEccC-CcceEeECCCCHHHH
Confidence 3332 135457999999999999999999999943 333379999999999
Q ss_pred HHHhhhhhccchh
Q 001574 788 LHQVLRWALGSVE 800 (1051)
Q Consensus 788 l~QR~RWa~G~iQ 800 (1051)
++||.||++|++|
T Consensus 241 ~~qr~RW~~G~~q 253 (254)
T cd04191 241 LKRDRRWCQGNLQ 253 (254)
T ss_pred HHHHHHHHhhcCc
Confidence 9999999999998
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.4e-29 Score=289.16 Aligned_cols=233 Identities=28% Similarity=0.382 Sum_probs=170.6
Q ss_pred CCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCcc
Q 001574 305 LAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPE 384 (1051)
Q Consensus 305 lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe 384 (1051)
+|.|||+||++| |++.++.+|+.|++++|||. +.++|.|||+++-|++-+.| ++.
T Consensus 53 ~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~~~--------------~~~------ 107 (439)
T COG1215 53 LPKVSVIIPAYN---EEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEILEE--------------LGA------ 107 (439)
T ss_pred CCceEEEEecCC---CchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHHHH--------------HHh------
Confidence 699999999999 99999999999999999996 78999999999833322222 110
Q ss_pred cccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccCCCC
Q 001574 385 FYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGA 464 (1051)
Q Consensus 385 ~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~ 464 (1051)
+ .+
T Consensus 108 -----------------------------------------~---~~--------------------------------- 110 (439)
T COG1215 108 -----------------------------------------E---YG--------------------------------- 110 (439)
T ss_pred -----------------------------------------h---cC---------------------------------
Confidence 0 00
Q ss_pred ccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEE
Q 001574 465 LDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCY 544 (1051)
Q Consensus 465 ~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vaf 544 (1051)
|.+.-+..++ .++.||||+|.++.. +.+++|+++|+|++ +.|++|++++..|.|+. .+|.
T Consensus 111 --------~~~~~~~~~~----~~~gK~~al~~~l~~----~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~---~~~v 170 (439)
T COG1215 111 --------PNFRVIYPEK----KNGGKAGALNNGLKR----AKGDVVVILDADTV-PEPDALRELVSPFEDPP---VGAV 170 (439)
T ss_pred --------cceEEEeccc----cCccchHHHHHHHhh----cCCCEEEEEcCCCC-CChhHHHHHHhhhcCCC---eeEE
Confidence 0111111122 678999999999985 56999999999997 89999999999999884 4489
Q ss_pred EecCccccCCCCCCcccchhhhHHHhhc-----ccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCc
Q 001574 545 VQFPQRFDGIDRHDRYANRNIVFFDINM-----LGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCC 619 (1051)
Q Consensus 545 VQ~PQ~F~nid~~D~y~n~~~vffdi~~-----~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~ 619 (1051)
+|.||.+.+.++....+....+.|.... .+.++-...++
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------------------------------ 214 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFL------------------------------------ 214 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEE------------------------------------
Confidence 9999999887651111111111111111 01111112222
Q ss_pred ccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhcCCcHH
Q 001574 620 CCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPV 699 (1051)
Q Consensus 620 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~ 699 (1051)
-|++..
T Consensus 215 --------------------------------------------------------------------------~G~~~~ 220 (439)
T COG1215 215 --------------------------------------------------------------------------SGSSSA 220 (439)
T ss_pred --------------------------------------------------------------------------cceeee
Confidence 266667
Q ss_pred HHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCCCCccccc
Q 001574 700 FIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGS 779 (1051)
Q Consensus 700 f~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~af~G~ 779 (1051)
||++++++.||+.+ .++|||.+++++++.+||++.|++... ++++
T Consensus 221 ~rr~aL~~~g~~~~---------------------------------~~i~ED~~lt~~l~~~G~~~~~~~~~~--~~~~ 265 (439)
T COG1215 221 FRRSALEEVGGWLE---------------------------------DTITEDADLTLRLHLRGYRVVYVPEAI--VWTE 265 (439)
T ss_pred EEHHHHHHhCCCCC---------------------------------CceeccHHHHHHHHHCCCeEEEeecce--Eeee
Confidence 77777777886554 699999999999999999999996543 4999
Q ss_pred CCCCHHHHHHHhhhhhccchhhhhh
Q 001574 780 APINLSDRLHQVLRWALGSVEIFLS 804 (1051)
Q Consensus 780 aP~tl~~~l~QR~RWa~G~iQil~s 804 (1051)
+|+|+.++++||.||++|.+|++..
T Consensus 266 ~p~t~~~~~~Qr~RW~~g~~~~~~~ 290 (439)
T COG1215 266 APETLKELWRQRLRWARGGLQVLLL 290 (439)
T ss_pred CcccHHHHHHHHHHHHcccceeeeh
Confidence 9999999999999999999999975
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.96 E-value=5.9e-28 Score=280.37 Aligned_cols=231 Identities=21% Similarity=0.232 Sum_probs=165.2
Q ss_pred CCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCC
Q 001574 303 NRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRA 382 (1051)
Q Consensus 303 ~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~ 382 (1051)
...|.|+|+||++| |+. .+.+|+.|+++.||| ++.++|.|||+++-|.+.+.+
T Consensus 72 ~~~p~vsViIP~yN---E~~-~i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~--------------------- 124 (444)
T PRK14583 72 KGHPLVSILVPCFN---EGL-NARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA--------------------- 124 (444)
T ss_pred CCCCcEEEEEEeCC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH---------------------
Confidence 35799999999999 885 468999999999999 489999999998733222211
Q ss_pred cccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccCC
Q 001574 383 PEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSE 462 (1051)
Q Consensus 383 Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~ 462 (1051)
+.++
T Consensus 125 ----------------------------------------~~~~------------------------------------ 128 (444)
T PRK14583 125 ----------------------------------------LLAE------------------------------------ 128 (444)
T ss_pred ----------------------------------------HHHh------------------------------------
Confidence 1100
Q ss_pred CCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhh-cCCCCCCc
Q 001574 463 GALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGKK 541 (1051)
Q Consensus 463 g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~-~Dp~~g~~ 541 (1051)
.|++.++.+++ ...||+|+|++++. ++++||+++|+|++ ++|++|++.+-.| .|| +
T Consensus 129 ---------~~~v~vv~~~~-----n~Gka~AlN~gl~~----a~~d~iv~lDAD~~-~~~d~L~~lv~~~~~~~----~ 185 (444)
T PRK14583 129 ---------DPRLRVIHLAH-----NQGKAIALRMGAAA----ARSEYLVCIDGDAL-LDKNAVPYLVAPLIANP----R 185 (444)
T ss_pred ---------CCCEEEEEeCC-----CCCHHHHHHHHHHh----CCCCEEEEECCCCC-cCHHHHHHHHHHHHhCC----C
Confidence 12345555443 23599999999985 68999999999997 7999999999866 466 8
Q ss_pred EEEEecCccccCCCCCCcccc----hhhhHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCC
Q 001574 542 LCYVQFPQRFDGIDRHDRYAN----RNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSW 617 (1051)
Q Consensus 542 vafVQ~PQ~F~nid~~D~y~n----~~~vffdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~ 617 (1051)
++.||..++..+.+ ...+. +...++....++.+-.+..+.+
T Consensus 186 ~g~v~g~~~~~~~~--~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~--------------------------------- 230 (444)
T PRK14583 186 TGAVTGNPRIRTRS--TLIGRVQVGEFSSIIGLIKRTQRVYGQVFTV--------------------------------- 230 (444)
T ss_pred eEEEEccceecCCC--cchhhHHHHHHHHHHHHHHHHHHHhCCceEe---------------------------------
Confidence 99999987765422 11111 1122222222222222222211
Q ss_pred CcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhcCCc
Q 001574 618 CCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQS 697 (1051)
Q Consensus 618 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s 697 (1051)
-|.+
T Consensus 231 ----------------------------------------------------------------------------sG~~ 234 (444)
T PRK14583 231 ----------------------------------------------------------------------------SGVV 234 (444)
T ss_pred ----------------------------------------------------------------------------cCce
Confidence 1444
Q ss_pred HHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCCCCccc
Q 001574 698 PVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFK 777 (1051)
Q Consensus 698 ~~f~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~af~ 777 (1051)
..||+++++++||+.+ +.++||++++++++.+||++.|++. . .++
T Consensus 235 ~~~rr~al~~vGg~~~---------------------------------~~i~ED~dl~~rl~~~G~~i~~~p~-a-~~~ 279 (444)
T PRK14583 235 AAFRRRALADVGYWSP---------------------------------DMITEDIDISWKLQLKHWSVFFEPR-G-LCW 279 (444)
T ss_pred eEEEHHHHHHcCCCCC---------------------------------CcccccHHHHHHHHHcCCeEEEeec-c-EEe
Confidence 4555666667787654 5899999999999999999999953 3 348
Q ss_pred ccCCCCHHHHHHHhhhhhccchhhhhhc
Q 001574 778 GSAPINLSDRLHQVLRWALGSVEIFLSR 805 (1051)
Q Consensus 778 G~aP~tl~~~l~QR~RWa~G~iQil~sk 805 (1051)
+++|+|++++++||.||++|.+|+++++
T Consensus 280 ~~~p~t~~~~~~Qr~RW~~G~~~~~~~~ 307 (444)
T PRK14583 280 ILMPETLRGLWKQRLRWAQGGAEVFLKN 307 (444)
T ss_pred eeCCCCHHHHHHHHHHHhCcHHHHHHHH
Confidence 9999999999999999999999999754
No 18
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.95 E-value=1.3e-26 Score=269.06 Aligned_cols=124 Identities=14% Similarity=0.111 Sum_probs=96.6
Q ss_pred CCcHHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhh-CCcEEEEecCCC
Q 001574 695 GQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHC-RGWKSVYCVPKR 773 (1051)
Q Consensus 695 G~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~-rGWrsvY~~p~~ 773 (1051)
|....||++++++.||+++ ++++||++++++++. .|+++.|+++
T Consensus 217 Ga~~~~Rr~~l~~vggf~~---------------------------------~~i~ED~~l~~rl~~~~g~kv~~~~~-- 261 (439)
T TIGR03111 217 GAFSAFRRETILKTQLYNS---------------------------------ETVGEDTDMTFQIRELLDGKVYLCEN-- 261 (439)
T ss_pred cHHHhhhHHHHHHhCCCCC---------------------------------CCcCccHHHHHHHHHhcCCeEEECCC--
Confidence 6777899999999999775 589999999999975 6899999843
Q ss_pred CcccccCCCCHHHHHHHhhhhhccchhhhhhccCccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCC
Q 001574 774 PAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTLPAICLLTGK 853 (1051)
Q Consensus 774 ~af~G~aP~tl~~~l~QR~RWa~G~iQil~sk~~Pl~~g~~~~Lt~~QRL~Yl~~~ly~l~sl~~liylllPil~LltG~ 853 (1051)
+.++.++|+|++++++||.||++|.+|++.....+.. ..+.++.+++.+......+...++.+++.++++++.++|.
T Consensus 262 a~~~~~~p~t~~~~~~QR~RW~rG~~qv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (439)
T TIGR03111 262 AIFYVDPIDGLNKLYTQRQRWQRGELEVSHMFFESAN---KSIKGFFSNFMVRRIMYDHTFAFPRMIWYFAMIFLIFLGY 338 (439)
T ss_pred CEEEEECCcCHHHHHHHHHHHhccHHHHHHHHHhhhh---hchhhhhhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHhcc
Confidence 3458999999999999999999999999965333332 3446666666554555556667788888888888887775
Q ss_pred cch
Q 001574 854 FII 856 (1051)
Q Consensus 854 ~ii 856 (1051)
++.
T Consensus 339 ~~~ 341 (439)
T TIGR03111 339 PVK 341 (439)
T ss_pred HHH
Confidence 544
No 19
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.95 E-value=4.5e-26 Score=261.26 Aligned_cols=235 Identities=24% Similarity=0.339 Sum_probs=167.2
Q ss_pred CCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCC
Q 001574 303 NRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRA 382 (1051)
Q Consensus 303 ~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~ 382 (1051)
...|.|.|+||++| |+ ..+.+|+.|+++++|| +..++|.|||.++-|.+.+.+
T Consensus 51 ~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~~--------------------- 103 (420)
T PRK11204 51 KEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILDR--------------------- 103 (420)
T ss_pred CCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHHH---------------------
Confidence 46899999999998 86 6789999999999999 578999999988732211111
Q ss_pred cccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccCC
Q 001574 383 PEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSE 462 (1051)
Q Consensus 383 Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~ 462 (1051)
+++
T Consensus 104 ----------------------------------------~~~------------------------------------- 106 (420)
T PRK11204 104 ----------------------------------------LAA------------------------------------- 106 (420)
T ss_pred ----------------------------------------HHH-------------------------------------
Confidence 110
Q ss_pred CCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhh-cCCCCCCc
Q 001574 463 GALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGKK 541 (1051)
Q Consensus 463 g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~-~Dp~~g~~ 541 (1051)
..|++.++.++++ ..||+|+|.+++. ++++||+++|+|.+ +.|++|.+.+..| .|| +
T Consensus 107 --------~~~~v~~i~~~~n-----~Gka~aln~g~~~----a~~d~i~~lDaD~~-~~~d~L~~l~~~~~~~~----~ 164 (420)
T PRK11204 107 --------QIPRLRVIHLAEN-----QGKANALNTGAAA----ARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNP----R 164 (420)
T ss_pred --------hCCcEEEEEcCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCCC-CChhHHHHHHHHHHhCC----C
Confidence 0134677776553 3499999999985 68999999999997 6999999999988 577 8
Q ss_pred EEEEecCccccCCCCCCcccchhhhHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCccc
Q 001574 542 LCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCC 621 (1051)
Q Consensus 542 vafVQ~PQ~F~nid~~D~y~n~~~vffdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c 621 (1051)
++.||...+..|... ..+..+...|.... |..-+-+..+|.
T Consensus 165 v~~v~g~~~~~~~~~--~~~~~~~~~~~~~~--------------~~~~~~~~~~~~----------------------- 205 (420)
T PRK11204 165 VGAVTGNPRIRNRST--LLGRIQVGEFSSII--------------GLIKRAQRVYGR----------------------- 205 (420)
T ss_pred eEEEECCceeccchh--HHHHHHHHHHHHhh--------------hHHHHHHHHhCC-----------------------
Confidence 999999877654321 11111110010000 000000000000
Q ss_pred CCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhcCCcHHHH
Q 001574 622 CGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFI 701 (1051)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~ 701 (1051)
...--|.+..||
T Consensus 206 --------------------------------------------------------------------~~~~~G~~~~~r 217 (420)
T PRK11204 206 --------------------------------------------------------------------VFTVSGVITAFR 217 (420)
T ss_pred --------------------------------------------------------------------ceEecceeeeee
Confidence 000015566778
Q ss_pred hhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCCCCcccccCC
Q 001574 702 ASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAP 781 (1051)
Q Consensus 702 ~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~af~G~aP 781 (1051)
+++++++||+.+ +.++||++++++++.+||++.|+ |+.. ++++.|
T Consensus 218 r~~l~~vgg~~~---------------------------------~~~~ED~~l~~rl~~~G~~i~~~-p~~~-~~~~~p 262 (420)
T PRK11204 218 KSALHEVGYWST---------------------------------DMITEDIDISWKLQLRGWDIRYE-PRAL-CWILMP 262 (420)
T ss_pred HHHHHHhCCCCC---------------------------------CcccchHHHHHHHHHcCCeEEec-cccE-EEeECc
Confidence 888888898765 57899999999999999999999 4443 489999
Q ss_pred CCHHHHHHHhhhhhccchhhhhhc
Q 001574 782 INLSDRLHQVLRWALGSVEIFLSR 805 (1051)
Q Consensus 782 ~tl~~~l~QR~RWa~G~iQil~sk 805 (1051)
+|++++++||.||++|.+|.++++
T Consensus 263 ~t~~~~~~Qr~RW~~G~~~~l~~~ 286 (420)
T PRK11204 263 ETLKGLWKQRLRWAQGGAEVLLKN 286 (420)
T ss_pred ccHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999999999753
No 20
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.93 E-value=4.1e-24 Score=251.42 Aligned_cols=265 Identities=18% Similarity=0.242 Sum_probs=179.5
Q ss_pred CCCCeeEEEecCCCCCCCHHHHHHHHHHHH-cCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCC
Q 001574 304 RLAPVDVFVSTVDPLKEPPIITANTVLSIL-SMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRA 382 (1051)
Q Consensus 304 ~lp~VDvfV~T~dp~kEpp~v~~nTvls~l-a~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~ 382 (1051)
..|.|+|+||.+| |. .++.+||-|++ ++||| ++.|+|.||++.+-|.+.+.+.+
T Consensus 64 ~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l~------------------- 118 (504)
T PRK14716 64 PEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRLA------------------- 118 (504)
T ss_pred CCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHHH-------------------
Confidence 4899999999999 86 78999999975 78996 78999999998875444333311
Q ss_pred cccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccCC
Q 001574 383 PEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSE 462 (1051)
Q Consensus 383 Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~ 462 (1051)
++ |
T Consensus 119 ------------------------------------------~~------------------------~----------- 121 (504)
T PRK14716 119 ------------------------------------------AR------------------------Y----------- 121 (504)
T ss_pred ------------------------------------------HH------------------------C-----------
Confidence 00 1
Q ss_pred CCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhc--cCCCC---CEEEEecCCCCCChHHHHHHHhhhhcCCC
Q 001574 463 GALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSA--VLTNA---PFILNLDCDHYLNNSKAVREAMCFLMDPQ 537 (1051)
Q Consensus 463 g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa--~~tng---p~il~lDcD~~~~~~~~Lr~amcf~~Dp~ 537 (1051)
|++..+. .+++| .+.||+|||.+++... -...| ++|+++|||.+ ++|++|+.....+-
T Consensus 122 ----------p~v~~vv-~~~~g--p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~Lr~~~~~~~--- 184 (504)
T PRK14716 122 ----------PRVHLVI-VPHDG--PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDV-IHPLELRLYNYLLP--- 184 (504)
T ss_pred ----------CCeEEEE-eCCCC--CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCC-cCccHHHHHHhhcC---
Confidence 2222222 22333 3589999999987531 01234 99999999998 69999997554443
Q ss_pred CCCcEEEEecCccccCCCCCCc----ccchhhhHHHhhcccccCCCCce-eeccCceehhhhhcCCCCCCCCCCCCCCCC
Q 001574 538 LGKKLCYVQFPQRFDGIDRHDR----YANRNIVFFDINMLGLDGIQGPV-YVGTGCVFNRQALYGYDPPVSEKRPKMTCD 612 (1051)
Q Consensus 538 ~g~~vafVQ~PQ~F~nid~~D~----y~n~~~vffdi~~~glDg~qgp~-yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~ 612 (1051)
+.++||.|....+.+.+.. |..+....+...++.++.+++++ ..|+|++|||++|-.
T Consensus 185 ---~~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~--------------- 246 (504)
T PRK14716 185 ---RHDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALER--------------- 246 (504)
T ss_pred ---CCCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHH---------------
Confidence 3468999987665433322 22222222344466677777765 568888888888720
Q ss_pred CCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhh
Q 001574 613 CWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEK 692 (1051)
Q Consensus 613 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1051)
T Consensus 247 -------------------------------------------------------------------------------- 246 (504)
T PRK14716 247 -------------------------------------------------------------------------------- 246 (504)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCcHHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCC
Q 001574 693 RFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPK 772 (1051)
Q Consensus 693 ~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~ 772 (1051)
...+.||. +|..+++|||+++|++++.+|||++|++..
T Consensus 247 -----------l~~~~GG~-------------------------------~fd~~sLTED~dLglRL~~~G~rv~y~p~a 284 (504)
T PRK14716 247 -----------LAAERGGQ-------------------------------PFDSDSLTEDYDIGLRLKRAGFRQIFVRVR 284 (504)
T ss_pred -----------HHhhcCCC-------------------------------CCCCCCcchHHHHHHHHHHCCCEEEEeccc
Confidence 00112331 255579999999999999999999998543
Q ss_pred C-------------CcccccCCCCHHHHHHHhhhhhccc-hhhhhhcc--CccccccCCCCCcccchhhhhhhh
Q 001574 773 R-------------PAFKGSAPINLSDRLHQVLRWALGS-VEIFLSRH--CPLWYGYGGKLKWLERLAYTNTIV 830 (1051)
Q Consensus 773 ~-------------~af~G~aP~tl~~~l~QR~RWa~G~-iQil~sk~--~Pl~~g~~~~Lt~~QRL~Yl~~~l 830 (1051)
. .+.++++|+|++++++||.||+.|. +|...+.- .++. .+.+.|++|.+.+..++
T Consensus 285 i~~~~~~~~~~~~~v~t~e~~P~t~~a~~rQR~RW~~Gi~~Q~~~~~gw~~~~~---~~~~~~rdr~~~~~~~~ 355 (504)
T PRK14716 285 ADDTTDRPDRRGEPIATREFFPDTFKAAVRQKARWIYGIAFQGWERLGWKGPAA---TKYMLWRDRKGLLTNLL 355 (504)
T ss_pred ccccccccccccccccccccCccCHHHHHHHHHHHHhchHHhhHHhcCCCCchh---hhhhHHHHHHHHHHHHH
Confidence 1 1235889999999999999999995 78864211 1221 23467788887776554
No 21
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.92 E-value=3.8e-24 Score=222.61 Aligned_cols=229 Identities=35% Similarity=0.584 Sum_probs=171.8
Q ss_pred CCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCccc
Q 001574 306 APVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEF 385 (1051)
Q Consensus 306 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~ 385 (1051)
|.|.|+||++| |++..+..++-|+++.+||.+++.++|+|||.+.- +.+..+
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~-------t~~~~~------------------ 52 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPE-------LRALAA------------------ 52 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchh-------HHHHHH------------------
Confidence 67999999999 88889999999999999999889999999998762 221110
Q ss_pred ccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccCCCCc
Q 001574 386 YFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGAL 465 (1051)
Q Consensus 386 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 465 (1051)
++..+
T Consensus 53 ------------------------------------~~~~~--------------------------------------- 57 (234)
T cd06421 53 ------------------------------------ELGVE--------------------------------------- 57 (234)
T ss_pred ------------------------------------Hhhcc---------------------------------------
Confidence 01000
Q ss_pred cccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcC-CCCCCcEEE
Q 001574 466 DVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMD-PQLGKKLCY 544 (1051)
Q Consensus 466 d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~D-p~~g~~vaf 544 (1051)
.++.|+.+++ +.+.||||+|++++. .+++||+.+|+|.+ .+|++|.+.+..|.+ | +++.
T Consensus 58 -------~~~~~~~~~~----~~~~~~~~~n~~~~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~~ 117 (234)
T cd06421 58 -------YGYRYLTRPD----NRHAKAGNLNNALAH----TTGDFVAILDADHV-PTPDFLRRTLGYFLDDP----KVAL 117 (234)
T ss_pred -------cCceEEEeCC----CCCCcHHHHHHHHHh----CCCCEEEEEccccC-cCccHHHHHHHHHhcCC----CeEE
Confidence 0246666665 456899999999994 58999999999998 589999999999876 6 8999
Q ss_pred EecCccccCCCCCC----cccchhhhHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcc
Q 001574 545 VQFPQRFDGIDRHD----RYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCC 620 (1051)
Q Consensus 545 VQ~PQ~F~nid~~D----~y~n~~~vffdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~ 620 (1051)
||.++.+.+.+..+ .+......|+.....+........+.|++.+||
T Consensus 118 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r----------------------------- 168 (234)
T cd06421 118 VQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVR----------------------------- 168 (234)
T ss_pred EecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEe-----------------------------
Confidence 99999998776542 222333344444443333333344444444444
Q ss_pred cCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhcCCcHHH
Q 001574 621 CCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVF 700 (1051)
Q Consensus 621 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f 700 (1051)
T Consensus 169 -------------------------------------------------------------------------------- 168 (234)
T cd06421 169 -------------------------------------------------------------------------------- 168 (234)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCCCCcccccC
Q 001574 701 IASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSA 780 (1051)
Q Consensus 701 ~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~af~G~a 780 (1051)
+++++++||++. ..+.||++++++++.+||+++|++... +++..
T Consensus 169 -~~~~~~ig~~~~---------------------------------~~~~eD~~l~~r~~~~g~~i~~~~~~~--~~~~~ 212 (234)
T cd06421 169 -REALDEIGGFPT---------------------------------DSVTEDLATSLRLHAKGWRSVYVPEPL--AAGLA 212 (234)
T ss_pred -HHHHHHhCCCCc---------------------------------cceeccHHHHHHHHHcCceEEEecCcc--ccccC
Confidence 444556777754 367899999999999999999995543 38999
Q ss_pred CCCHHHHHHHhhhhhccchhhh
Q 001574 781 PINLSDRLHQVLRWALGSVEIF 802 (1051)
Q Consensus 781 P~tl~~~l~QR~RWa~G~iQil 802 (1051)
|.+++.+++||.||.+|++|++
T Consensus 213 ~~~~~~~~~q~~rw~~~~~~~~ 234 (234)
T cd06421 213 PETLAAYIKQRLRWARGMLQIL 234 (234)
T ss_pred CccHHHHHHHHHHHhcCCeeeC
Confidence 9999999999999999999864
No 22
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.92 E-value=1.6e-23 Score=255.35 Aligned_cols=200 Identities=21% Similarity=0.295 Sum_probs=133.0
Q ss_pred CCccchhhHHHHhhcc---CCCC--CEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCccccCCCCCCc----
Q 001574 489 HKKAGAMNALVRVSAV---LTNA--PFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDR---- 559 (1051)
Q Consensus 489 h~KAGalNallrvSa~---~tng--p~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~nid~~D~---- 559 (1051)
+.||+|||.++....- .+.+ +.++++|||.+ +.|++|+ .+-+|+++ + ++||.|..-.+...+..
T Consensus 132 ~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~-v~pd~L~-~~~~l~~~----~-~~VQ~p~~p~~~~~~~~~~~~ 204 (727)
T PRK11234 132 TSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV-ISPMELR-LFNYLVER----K-DLIQIPVYPFEREWTHFTSGT 204 (727)
T ss_pred CCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC-CChhHHH-HHHhhcCC----C-CeEeecccCCCccHHHHHHHH
Confidence 4799999999885311 1133 45888999997 6999998 67888886 4 89999966322222211
Q ss_pred ccchhhhHHHhhcccccCCCCceee-ccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccccccCCCCc
Q 001574 560 YANRNIVFFDINMLGLDGIQGPVYV-GTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKGDKRG 638 (1051)
Q Consensus 560 y~n~~~vffdi~~~glDg~qgp~yv-GTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 638 (1051)
|..+....+...+++++.++|++.+ |+|++|.|++|
T Consensus 205 ~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l------------------------------------------- 241 (727)
T PRK11234 205 YIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAV------------------------------------------- 241 (727)
T ss_pred HHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccH-------------------------------------------
Confidence 2233333445667888888777544 78888844432
Q ss_pred ccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhcCCcHHHHhhhhhhcCCCCCCCCch
Q 001574 639 FFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNST 718 (1051)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~ 718 (1051)
+++.+.||
T Consensus 242 ----------------------------------------------------------------~al~~~gg-------- 249 (727)
T PRK11234 242 ----------------------------------------------------------------TALLEDGD-------- 249 (727)
T ss_pred ----------------------------------------------------------------HHHHHhcC--------
Confidence 11223442
Q ss_pred hHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCCC---------------------Cccc
Q 001574 719 SLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKR---------------------PAFK 777 (1051)
Q Consensus 719 ~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~---------------------~af~ 777 (1051)
..+|..+++|||+++|++|+.+||+++|++..+ .+++
T Consensus 250 ----------------------g~~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (727)
T PRK11234 250 ----------------------GIAFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVR 307 (727)
T ss_pred ----------------------CCCcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccccccccceEEE
Confidence 125777999999999999999999999996111 3467
Q ss_pred ccCCCCHHHHHHHhhhhhcc-chhhhhhccCcccccc--CCCCCcccchhhhhhhhhhhhH
Q 001574 778 GSAPINLSDRLHQVLRWALG-SVEIFLSRHCPLWYGY--GGKLKWLERLAYTNTIVYPFTS 835 (1051)
Q Consensus 778 G~aP~tl~~~l~QR~RWa~G-~iQil~sk~~Pl~~g~--~~~Lt~~QRL~Yl~~~ly~l~s 835 (1051)
+..|+|+++.++||.||.+| .+|.+... .|.|. .+-+.|+.|-.++..++..++.
T Consensus 308 ~~~P~t~~~~~rQR~RW~~G~~~q~~~~~---~w~~~~~~~~~~~r~r~~~~~~~~s~~~~ 365 (727)
T PRK11234 308 EYFPDTFSAAVRQKSRWIIGIVFQGFKTL---GWTSSLTLNYFLWRDRKGAITNFVSFLAM 365 (727)
T ss_pred EeCchhHHHHHHHHHHHHcccHHHHHHHh---CCCcchhhhhhhHHhhhHHHHHHHHHHHH
Confidence 88999999999999999999 58887432 12110 1224455565555544444333
No 23
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.91 E-value=1.5e-23 Score=220.46 Aligned_cols=227 Identities=23% Similarity=0.349 Sum_probs=162.2
Q ss_pred CCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCccc
Q 001574 306 APVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEF 385 (1051)
Q Consensus 306 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~ 385 (1051)
|.|.|+||++| |. ..+..++-|+++++||.+++.|+|.|| ++.-|++.+.+..
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~---------------------- 53 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIV---------------------- 53 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHH----------------------
Confidence 57999999998 85 678999999999999999999999998 5653443332210
Q ss_pred ccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccCCCCc
Q 001574 386 YFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGAL 465 (1051)
Q Consensus 386 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 465 (1051)
.+++ .
T Consensus 54 ----------------------------~~~~--------------~--------------------------------- 58 (232)
T cd06437 54 ----------------------------EEYA--------------A--------------------------------- 58 (232)
T ss_pred ----------------------------HHHh--------------h---------------------------------
Confidence 0000 0
Q ss_pred cccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEE
Q 001574 466 DVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYV 545 (1051)
Q Consensus 466 d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafV 545 (1051)
.-|++.++.+.+++| .||+|+|++++. .+++||+++|+|.+ +.|++|++...++.|| ++++|
T Consensus 59 -----~~~~i~~~~~~~~~G----~k~~a~n~g~~~----a~~~~i~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v 120 (232)
T cd06437 59 -----QGVNIKHVRRADRTG----YKAGALAEGMKV----AKGEYVAIFDADFV-PPPDFLQKTPPYFADP----KLGFV 120 (232)
T ss_pred -----cCCceEEEECCCCCC----CchHHHHHHHHh----CCCCEEEEEcCCCC-CChHHHHHhhhhhcCC----CeEEE
Confidence 013578888877554 699999999994 68999999999998 6999999977777787 89999
Q ss_pred ecCccccCCCCCCcccchh-----hhHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcc
Q 001574 546 QFPQRFDGIDRHDRYANRN-----IVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCC 620 (1051)
Q Consensus 546 Q~PQ~F~nid~~D~y~n~~-----~vffdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~ 620 (1051)
|.+..+.+.+.+ +-... ..+|.....+......
T Consensus 121 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 158 (232)
T cd06437 121 QTRWGHINANYS--LLTRVQAMSLDYHFTIEQVARSSTGL---------------------------------------- 158 (232)
T ss_pred ecceeeEcCCCc--hhhHhhhhhHHhhhhHhHhhHhhcCC----------------------------------------
Confidence 997766543321 00000 0000000000000000
Q ss_pred cCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhcCCcHHH
Q 001574 621 CCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVF 700 (1051)
Q Consensus 621 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f 700 (1051)
+-.--|....|
T Consensus 159 ---------------------------------------------------------------------~~~~~g~~~~~ 169 (232)
T cd06437 159 ---------------------------------------------------------------------FFNFNGTAGVW 169 (232)
T ss_pred ---------------------------------------------------------------------eEEeccchhhh
Confidence 00012566678
Q ss_pred HhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCCCCcccccC
Q 001574 701 IASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSA 780 (1051)
Q Consensus 701 ~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~af~G~a 780 (1051)
|+++++++||+++ .++.||+++++|++.+||+++|+ |+.. ++...
T Consensus 170 rr~~~~~vgg~~~---------------------------------~~~~ED~~l~~rl~~~G~~~~~~-~~~~-v~~~~ 214 (232)
T cd06437 170 RKECIEDAGGWNH---------------------------------DTLTEDLDLSYRAQLKGWKFVYL-DDVV-VPAEL 214 (232)
T ss_pred hHHHHHHhCCCCC---------------------------------CcchhhHHHHHHHHHCCCeEEEe-ccce-eeeeC
Confidence 8888899999865 36789999999999999999999 5444 48999
Q ss_pred CCCHHHHHHHhhhhhccc
Q 001574 781 PINLSDRLHQVLRWALGS 798 (1051)
Q Consensus 781 P~tl~~~l~QR~RWa~G~ 798 (1051)
|+|+.++++||+||++|.
T Consensus 215 ~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 215 PASMSAYRSQQHRWSKGP 232 (232)
T ss_pred CcCHHHHHHHHHHhccCC
Confidence 999999999999999984
No 24
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.89 E-value=2.6e-22 Score=213.11 Aligned_cols=233 Identities=21% Similarity=0.287 Sum_probs=164.7
Q ss_pred CCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCccc
Q 001574 306 APVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEF 385 (1051)
Q Consensus 306 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~ 385 (1051)
|.|.|+||++| |+ ..+..|+.|+++++||.+++.++|.|||.++-|.+-+.+
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~------------------------ 52 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARA------------------------ 52 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHH------------------------
Confidence 67999999999 86 778999999999999988899999999988733221111
Q ss_pred ccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccCCCCc
Q 001574 386 YFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGAL 465 (1051)
Q Consensus 386 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 465 (1051)
+. . +
T Consensus 53 -------------------------------------~~-~----~---------------------------------- 56 (241)
T cd06427 53 -------------------------------------LR-L----P---------------------------------- 56 (241)
T ss_pred -------------------------------------hc-c----C----------------------------------
Confidence 00 0 0
Q ss_pred cccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEE
Q 001574 466 DVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYV 545 (1051)
Q Consensus 466 d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafV 545 (1051)
.-.+++++.+.+ ...|++|+|++++. ++|+||+.+|+|.. ..|++|.+++.+|.+. ..++++|
T Consensus 57 -----~~~~i~~~~~~~-----~~G~~~a~n~g~~~----a~gd~i~~~DaD~~-~~~~~l~~~~~~~~~~--~~~v~~~ 119 (241)
T cd06427 57 -----SIFRVVVVPPSQ-----PRTKPKACNYALAF----ARGEYVVIYDAEDA-PDPDQLKKAVAAFARL--DDKLACV 119 (241)
T ss_pred -----CCeeEEEecCCC-----CCchHHHHHHHHHh----cCCCEEEEEcCCCC-CChHHHHHHHHHHHhc--CCCEEEE
Confidence 001244443322 23699999999994 68999999999998 6899999999988621 1389999
Q ss_pred ecCccccCCCCCC---cccchhhhHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccC
Q 001574 546 QFPQRFDGIDRHD---RYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCC 622 (1051)
Q Consensus 546 Q~PQ~F~nid~~D---~y~n~~~vffdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~ 622 (1051)
|.+..+++...+- .+......+|+..+++.+..+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 159 (241)
T cd06427 120 QAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPI---------------------------------------- 159 (241)
T ss_pred eCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCee----------------------------------------
Confidence 9998877543210 000000011111111111111000
Q ss_pred CCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhcCCcHHHHh
Q 001574 623 GGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIA 702 (1051)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~ 702 (1051)
...|++..||+
T Consensus 160 ---------------------------------------------------------------------~~~g~~~~~rr 170 (241)
T cd06427 160 ---------------------------------------------------------------------PLGGTSNHFRT 170 (241)
T ss_pred ---------------------------------------------------------------------ecCCchHHhhH
Confidence 01255667888
Q ss_pred hhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCCCCcccccCCC
Q 001574 703 STLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPI 782 (1051)
Q Consensus 703 s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~af~G~aP~ 782 (1051)
++++++||+.+ ...+||+++++|++.+||+++|+ +.. ++...|+
T Consensus 171 ~~~~~vgg~~~---------------------------------~~~~eD~~l~~rl~~~G~r~~~~-~~~--~~~~~~~ 214 (241)
T cd06427 171 DVLRELGGWDP---------------------------------FNVTEDADLGLRLARAGYRTGVL-NST--TLEEANN 214 (241)
T ss_pred HHHHHcCCCCc---------------------------------ccchhhHHHHHHHHHCCceEEEe-ccc--ccccCcH
Confidence 88888998754 36789999999999999999999 433 3789999
Q ss_pred CHHHHHHHhhhhhccchhhhhh
Q 001574 783 NLSDRLHQVLRWALGSVEIFLS 804 (1051)
Q Consensus 783 tl~~~l~QR~RWa~G~iQil~s 804 (1051)
|++.+++||.||++|.+|++..
T Consensus 215 ~~~~~~~q~~Rw~~g~~~~~~~ 236 (241)
T cd06427 215 ALGNWIRQRSRWIKGYMQTWLV 236 (241)
T ss_pred hHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999999999999964
No 25
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.89 E-value=1.2e-21 Score=205.46 Aligned_cols=173 Identities=27% Similarity=0.401 Sum_probs=121.0
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCccccCC
Q 001574 475 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGI 554 (1051)
Q Consensus 475 lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~ni 554 (1051)
+.++..++. .+.||||+|.+++.+. .+++||+.+|+|-. ..|++|.+.+.+|.+| +++.||+|+.+.+.
T Consensus 58 i~~i~~~~~----~G~~~~a~n~g~~~a~--~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~~ 126 (236)
T cd06435 58 FRFFHVEPL----PGAKAGALNYALERTA--PDAEIIAVIDADYQ-VEPDWLKRLVPIFDDP----RVGFVQAPQDYRDG 126 (236)
T ss_pred EEEEEcCCC----CCCchHHHHHHHHhcC--CCCCEEEEEcCCCC-cCHHHHHHHHHHhcCC----CeeEEecCccccCC
Confidence 566666653 3469999999998632 46899999999986 6899999999998776 89999998765432
Q ss_pred CCCCcccc----hhhhHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccc
Q 001574 555 DRHDRYAN----RNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKS 630 (1051)
Q Consensus 555 d~~D~y~n----~~~vffdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 630 (1051)
.. ..+.- ....+|...++.....+....
T Consensus 127 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 158 (236)
T cd06435 127 EE-SLFKRMCYAEYKGFFDIGMVSRNERNAIIQ----------------------------------------------- 158 (236)
T ss_pred Cc-cHHHHHHhHHHHHHHHHHhccccccCceEE-----------------------------------------------
Confidence 11 11100 000001111111111111111
Q ss_pred cccCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhcCCcHHHHhhhhhhcCC
Q 001574 631 KKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGG 710 (1051)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG 710 (1051)
.|+...+|++++.++||
T Consensus 159 ---------------------------------------------------------------~g~~~~~rr~~~~~iGg 175 (236)
T cd06435 159 ---------------------------------------------------------------HGTMCLIRRSALDDVGG 175 (236)
T ss_pred ---------------------------------------------------------------ecceEEEEHHHHHHhCC
Confidence 24555667777778898
Q ss_pred CCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCCCCcccccCCCCHHHHHHH
Q 001574 711 LPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQ 790 (1051)
Q Consensus 711 ~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~af~G~aP~tl~~~l~Q 790 (1051)
+++ ....||++++++++.+||++.|++. ..+ +...|.++.++++|
T Consensus 176 f~~---------------------------------~~~~eD~dl~~r~~~~G~~~~~~~~-~~~-~~~~~~~~~~~~~q 220 (236)
T cd06435 176 WDE---------------------------------WCITEDSELGLRMHEAGYIGVYVAQ-SYG-HGLIPDTFEAFKKQ 220 (236)
T ss_pred CCC---------------------------------ccccchHHHHHHHHHCCcEEEEcch-hhc-cCcCcccHHHHHHH
Confidence 765 3578999999999999999999954 333 89999999999999
Q ss_pred hhhhhccchhhhhh
Q 001574 791 VLRWALGSVEIFLS 804 (1051)
Q Consensus 791 R~RWa~G~iQil~s 804 (1051)
|+||++|++|++.+
T Consensus 221 ~~rw~~g~~~~~~~ 234 (236)
T cd06435 221 RFRWAYGAVQILKK 234 (236)
T ss_pred HHHHhcchhhhhhc
Confidence 99999999999963
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.86 E-value=1.4e-22 Score=211.16 Aligned_cols=224 Identities=26% Similarity=0.389 Sum_probs=133.1
Q ss_pred CCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCccc
Q 001574 306 APVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEF 385 (1051)
Q Consensus 306 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~ 385 (1051)
|.|.|+||++| |+. .+..||.|+++++|| ++.++|+||+...-|.+.+.
T Consensus 1 P~v~Vvip~~~---~~~-~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~~------------------------- 49 (228)
T PF13641_consen 1 PRVSVVIPAYN---EDD-VLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEILR------------------------- 49 (228)
T ss_dssp --EEEE--BSS----HH-HHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTHH-------------------------
T ss_pred CEEEEEEEecC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHHH-------------------------
Confidence 78999999998 764 889999999999995 59999999998763222211
Q ss_pred ccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccCCCCc
Q 001574 386 YFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGAL 465 (1051)
Q Consensus 386 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 465 (1051)
+++++ .|.
T Consensus 50 ------------------------------------~~~~~---~~~--------------------------------- 57 (228)
T PF13641_consen 50 ------------------------------------ALAAR---YPR--------------------------------- 57 (228)
T ss_dssp ------------------------------------HHHHT---TGG---------------------------------
T ss_pred ------------------------------------HHHHH---cCC---------------------------------
Confidence 11111 000
Q ss_pred cccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEE
Q 001574 466 DVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYV 545 (1051)
Q Consensus 466 d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafV 545 (1051)
-++.++.+.+++| ...|++|+|.+++. ..+++|+++|+|.+ +.|++|++++.+|.+| +++.|
T Consensus 58 -------~~v~vi~~~~~~g--~~~k~~a~n~~~~~----~~~d~i~~lD~D~~-~~p~~l~~~~~~~~~~----~~~~v 119 (228)
T PF13641_consen 58 -------VRVRVIRRPRNPG--PGGKARALNEALAA----ARGDYILFLDDDTV-LDPDWLERLLAAFADP----GVGAV 119 (228)
T ss_dssp --------GEEEEE----HH--HHHHHHHHHHHHHH-------SEEEEE-SSEE-E-CHHHHHHHHHHHBS----S--EE
T ss_pred -------CceEEeecCCCCC--cchHHHHHHHHHHh----cCCCEEEEECCCcE-ECHHHHHHHHHHHHhC----CCCeE
Confidence 0257777665321 23699999999995 56999999999998 5999999999999888 89999
Q ss_pred ecCccccCCCCCCcccchhhhHHHhh----cccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCccc
Q 001574 546 QFPQRFDGIDRHDRYANRNIVFFDIN----MLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCC 621 (1051)
Q Consensus 546 Q~PQ~F~nid~~D~y~n~~~vffdi~----~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c 621 (1051)
|.+..+++ +.+ .+......++... ..+..+.+.+++.
T Consensus 120 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 160 (228)
T PF13641_consen 120 GGPVFPDN-DRN-WLTRLQDLFFARWHLRFRSGRRALGVAFLS------------------------------------- 160 (228)
T ss_dssp EEEEEETT-CCC-EEEE-TT--S-EETTTS-TT-B----S-B--------------------------------------
T ss_pred eeeEeecC-CCC-HHHHHHHHHHhhhhhhhhhhhcccceeecc-------------------------------------
Confidence 98886664 221 1111111111100 1111222222223
Q ss_pred CCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhcCCcHHHH
Q 001574 622 CGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFI 701 (1051)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~ 701 (1051)
|++..||
T Consensus 161 -------------------------------------------------------------------------G~~~~~r 167 (228)
T PF13641_consen 161 -------------------------------------------------------------------------GSGMLFR 167 (228)
T ss_dssp --------------------------------------------------------------------------TEEEEE
T ss_pred -------------------------------------------------------------------------CcEEEEE
Confidence 4445555
Q ss_pred hhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCCCCcccccCC
Q 001574 702 ASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAP 781 (1051)
Q Consensus 702 ~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~af~G~aP 781 (1051)
+++++++|||++ ....||.++++++.++||+++|++ .. .++...|
T Consensus 168 r~~~~~~g~fd~---------------------------------~~~~eD~~l~~r~~~~G~~~~~~~-~~-~v~~~~~ 212 (228)
T PF13641_consen 168 RSALEEVGGFDP---------------------------------FILGEDFDLCLRLRAAGWRIVYAP-DA-LVYHEEP 212 (228)
T ss_dssp HHHHHHH-S--S---------------------------------SSSSHHHHHHHHHHHTT--EEEEE-EE-EEEE--S
T ss_pred HHHHHHhCCCCC---------------------------------CCcccHHHHHHHHHHCCCcEEEEC-Cc-EEEEeCC
Confidence 566667787654 467899999999999999999994 33 3489999
Q ss_pred CCHHHHHHHhhhhhcc
Q 001574 782 INLSDRLHQVLRWALG 797 (1051)
Q Consensus 782 ~tl~~~l~QR~RWa~G 797 (1051)
.+++++++||.||++|
T Consensus 213 ~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 213 SSLKAFFKQRFRWSRG 228 (228)
T ss_dssp SSTHHHHHHHHHHH--
T ss_pred CCHHHHHHHHhccCcC
Confidence 9999999999999987
No 27
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.82 E-value=2.2e-18 Score=208.69 Aligned_cols=172 Identities=19% Similarity=0.282 Sum_probs=127.0
Q ss_pred CCCccchhhHHHHhh---ccCCCCCE--EEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCcc-ccCCCCC---C
Q 001574 488 HHKKAGAMNALVRVS---AVLTNAPF--ILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQR-FDGIDRH---D 558 (1051)
Q Consensus 488 hh~KAGalNallrvS---a~~tngp~--il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~-F~nid~~---D 558 (1051)
...||.|||.++... .-.+.+.| |+++|||-+ ++|++|+. |-++++. + -+||.|=. ..|...+ -
T Consensus 139 p~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~-~~P~~L~~-~~~~~~~----~-~~iQ~pV~~~~~~~~~~l~~ 211 (703)
T PRK15489 139 PTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDV-LHPLELKY-FNYLLPR----K-DLVQLPVLSLERKWYEWVAG 211 (703)
T ss_pred CCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCC-CChhHHHH-HHhhcCC----c-ceeeeeeccCCCccccHHHH
Confidence 357999999988742 11234555 999999997 79999975 5666643 1 36998721 1121111 2
Q ss_pred cccchhhhHHHhhcccccCCCCceee-ccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccccccCCCC
Q 001574 559 RYANRNIVFFDINMLGLDGIQGPVYV-GTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKGDKR 637 (1051)
Q Consensus 559 ~y~n~~~vffdi~~~glDg~qgp~yv-GTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 637 (1051)
.|+.+....|+..|+++..++|++.+ |||++|||.||-.
T Consensus 212 ~~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~~---------------------------------------- 251 (703)
T PRK15489 212 TYMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALLA---------------------------------------- 251 (703)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHHH----------------------------------------
Confidence 37778888889999999999999886 6899999999820
Q ss_pred cccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhcCCcHHHHhhhhhhcCCCCCCCCc
Q 001574 638 GFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNS 717 (1051)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~~~~~ 717 (1051)
+.+.||+.
T Consensus 252 -------------------------------------------------------------------l~~~gg~~----- 259 (703)
T PRK15489 252 -------------------------------------------------------------------LMKERGNQ----- 259 (703)
T ss_pred -------------------------------------------------------------------HHHhcCCC-----
Confidence 11234321
Q ss_pred hhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecC---------------------CCCcc
Q 001574 718 TSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVP---------------------KRPAF 776 (1051)
Q Consensus 718 ~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p---------------------~~~af 776 (1051)
+|..+++|||+++|+||+.+||++.|+.- ...+.
T Consensus 260 -------------------------~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 314 (703)
T PRK15489 260 -------------------------PFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCV 314 (703)
T ss_pred -------------------------CCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceee
Confidence 47778999999999999999999999311 13456
Q ss_pred cccCCCCHHHHHHHhhhhhccch-hhhh
Q 001574 777 KGSAPINLSDRLHQVLRWALGSV-EIFL 803 (1051)
Q Consensus 777 ~G~aP~tl~~~l~QR~RWa~G~i-Qil~ 803 (1051)
.+..|.|+.+.++||.||..|-. |-..
T Consensus 315 re~fP~~~~a~~rQk~RW~~Gi~~q~~~ 342 (703)
T PRK15489 315 REYFPDTFRTAYRQKARWVLGIAFQGWE 342 (703)
T ss_pred hhhCcHHHHHHHHHHHHHHhHHHHhhHH
Confidence 78999999999999999999977 7753
No 28
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.81 E-value=6.3e-20 Score=196.60 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=46.2
Q ss_pred ccccchHHHHHHHhhCCcEEEE--ecCCCCcccccCCCCHHHHHHHhhhhhccchh
Q 001574 747 GSITEDILTGFKMHCRGWKSVY--CVPKRPAFKGSAPINLSDRLHQVLRWALGSVE 800 (1051)
Q Consensus 747 gsvTED~~Tg~rL~~rGWrsvY--~~p~~~af~G~aP~tl~~~l~QR~RWa~G~iQ 800 (1051)
.+++||.+++++|..+||++.| + |... ++.++|+|++++++||+||++|++.
T Consensus 190 ~~~~ED~~l~~~l~~~G~~~~~~~~-~~a~-~~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 190 LDLGEDRILCTLLLKAGPKRKYLYV-PGAV-AETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred HhHhcccceeHHHhccCCccEEEEe-cccE-EEEECCCCHHHHHHHhHhhhccccc
Confidence 4799999999999999999999 7 4333 3899999999999999999999874
No 29
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.81 E-value=2.1e-18 Score=196.40 Aligned_cols=234 Identities=17% Similarity=0.197 Sum_probs=157.3
Q ss_pred CCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCc
Q 001574 304 RLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAP 383 (1051)
Q Consensus 304 ~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~P 383 (1051)
..|+|.|+||++| |++ .+.+++.|++++|||. +.++|.||+.+.-|.+.+.+
T Consensus 39 ~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~~---------------------- 90 (373)
T TIGR03472 39 AWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVRR---------------------- 90 (373)
T ss_pred CCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHHH----------------------
Confidence 4799999999999 885 5679999999999995 78999999877633221111
Q ss_pred ccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccCCC
Q 001574 384 EFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEG 463 (1051)
Q Consensus 384 e~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g 463 (1051)
+.++ ||.
T Consensus 91 ---------------------------------------~~~~------------------------~p~---------- 97 (373)
T TIGR03472 91 ---------------------------------------LRAD------------------------FPD---------- 97 (373)
T ss_pred ---------------------------------------HHHh------------------------CCC----------
Confidence 1100 000
Q ss_pred CccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEE
Q 001574 464 ALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLC 543 (1051)
Q Consensus 464 ~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~va 543 (1051)
.++.++.+.++.| .+.|++|+|++++. +.+++|+.+|+|.. +.|++|++.+..|.|| +++
T Consensus 98 ---------~~i~~v~~~~~~G--~~~K~~~l~~~~~~----a~ge~i~~~DaD~~-~~p~~L~~lv~~~~~~----~v~ 157 (373)
T TIGR03472 98 ---------ADIDLVIDARRHG--PNRKVSNLINMLPH----ARHDILVIADSDIS-VGPDYLRQVVAPLADP----DVG 157 (373)
T ss_pred ---------CceEEEECCCCCC--CChHHHHHHHHHHh----ccCCEEEEECCCCC-cChhHHHHHHHHhcCC----Ccc
Confidence 1356665444333 45799999998874 68999999999997 6999999999999888 899
Q ss_pred EEecCccccCCCCCCcccchhhhHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCC
Q 001574 544 YVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCG 623 (1051)
Q Consensus 544 fVQ~PQ~F~nid~~D~y~n~~~vffdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~ 623 (1051)
.|+.+.+.. +.+ .+.++....+ .+. .|-...+...
T Consensus 158 ~V~~~~~~~--~~~-~~~~~l~~~~------~~~-----------~~~~~~~~~~------------------------- 192 (373)
T TIGR03472 158 LVTCLYRGR--PVP-GFWSRLGAMG------INH-----------NFLPSVMVAR------------------------- 192 (373)
T ss_pred eEeccccCC--CCC-CHHHHHHHHH------hhh-----------hhhHHHHHHH-------------------------
Confidence 999864422 111 1111110000 000 0000000000
Q ss_pred CCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhcCCcHHHHhh
Q 001574 624 GSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIAS 703 (1051)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s 703 (1051)
. . .....-.|++..|||+
T Consensus 193 -------------------------~-----------------------------------~--~~~~~~~G~~~a~RR~ 210 (373)
T TIGR03472 193 -------------------------A-----------------------------------L--GRARFCFGATMALRRA 210 (373)
T ss_pred -------------------------h-----------------------------------c--cCCccccChhhheeHH
Confidence 0 0 0000124778889999
Q ss_pred hhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCCCCcccccCCCC
Q 001574 704 TLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPIN 783 (1051)
Q Consensus 704 ~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~af~G~aP~t 783 (1051)
+++++||++.. ..+++||++++.++.++||++.|.+. ... +...|+|
T Consensus 211 ~l~~iGGf~~~-------------------------------~~~~~ED~~l~~~i~~~G~~v~~~~~-~v~-~~~~~~s 257 (373)
T TIGR03472 211 TLEAIGGLAAL-------------------------------AHHLADDYWLGELVRALGLRVVLAPV-VVD-TDVHETS 257 (373)
T ss_pred HHHHcCChHHh-------------------------------cccchHHHHHHHHHHHcCCeEEecch-hhh-cCCCccC
Confidence 99999998641 14688999999999999999999843 332 6788899
Q ss_pred HHHHHHHhhhhhccc
Q 001574 784 LSDRLHQVLRWALGS 798 (1051)
Q Consensus 784 l~~~l~QR~RWa~G~ 798 (1051)
++++++||.||++..
T Consensus 258 ~~~~~~q~~RW~r~~ 272 (373)
T TIGR03472 258 FATLLAHELRWSRTI 272 (373)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999998443
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.79 E-value=2e-18 Score=178.43 Aligned_cols=122 Identities=18% Similarity=0.223 Sum_probs=91.6
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCccccccc
Q 001574 310 VFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEFYFSQ 389 (1051)
Q Consensus 310 vfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~YFs~ 389 (1051)
|+|||+| |+ ..+.+||-|+++.+||.+++.++|.|||.+.-|.+.+.+ +
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~----~----------------------- 49 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEF----A----------------------- 49 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHH----H-----------------------
Confidence 6899998 75 789999999999999998899999999987632221110 0
Q ss_pred ccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccCCCCccccC
Q 001574 390 KIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEG 469 (1051)
Q Consensus 390 k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~~ 469 (1051)
. +
T Consensus 50 ---------------------------------~--~------------------------------------------- 51 (229)
T cd04192 50 ---------------------------------A--A------------------------------------------- 51 (229)
T ss_pred ---------------------------------H--h-------------------------------------------
Confidence 0 0
Q ss_pred CCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCc
Q 001574 470 KELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQ 549 (1051)
Q Consensus 470 ~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ 549 (1051)
...|++.++.++. + ....|+.|+|.++.. ++++||+++|+|.+ ..|++|.+.+..|.++ ..+.|+.++
T Consensus 52 ~~~~~v~~~~~~~-~--~~~g~~~a~n~g~~~----~~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~ 119 (229)
T cd04192 52 KPNFQLKILNNSR-V--SISGKKNALTTAIKA----AKGDWIVTTDADCV-VPSNWLLTFVAFIQKE----QIGLVAGPV 119 (229)
T ss_pred CCCcceEEeeccC-c--ccchhHHHHHHHHHH----hcCCEEEEECCCcc-cCHHHHHHHHHHhhcC----CCcEEeeee
Confidence 0012455555443 1 235788999999884 68999999999997 5899999999987665 677888888
Q ss_pred ccc
Q 001574 550 RFD 552 (1051)
Q Consensus 550 ~F~ 552 (1051)
.+.
T Consensus 120 ~~~ 122 (229)
T cd04192 120 IYF 122 (229)
T ss_pred eec
Confidence 876
No 31
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.77 E-value=7e-18 Score=173.88 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=42.3
Q ss_pred cccchHHHHHHHhhCCcEEEEecCCCCcccccCCCCHHHHHHHhhhhhcc
Q 001574 748 SITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALG 797 (1051)
Q Consensus 748 svTED~~Tg~rL~~rGWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWa~G 797 (1051)
.+.||+++++++..+||++.|++ .. ..+...|.+++++++||.||++.
T Consensus 148 ~~~eD~~l~~rl~~~G~~i~~~~-~~-~~~~~~~~~~~~~~~q~~rw~~~ 195 (196)
T cd02520 148 YLAEDYFLGKLIWRLGYRVVLSP-YV-VMQPLGSTSLASFWRRQLRWSRT 195 (196)
T ss_pred HHHHHHHHHHHHHHcCCeEEEcc-hh-eeccCCcccHHHHHHHHHHHhcc
Confidence 46899999999999999999994 43 34899999999999999999863
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.73 E-value=8.5e-17 Score=168.24 Aligned_cols=59 Identities=25% Similarity=0.213 Sum_probs=51.8
Q ss_pred CCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCccccCCC
Q 001574 488 HHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGID 555 (1051)
Q Consensus 488 hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~nid 555 (1051)
+..|++|+|.+++. +.++||+++|+|.+ +.|++|++++..|.|| +++.|+..+.+.+.+
T Consensus 62 ~~g~~~a~n~g~~~----a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~----~v~~v~~~~~~~~~~ 120 (235)
T cd06434 62 HPGKRRALAEGIRH----VTTDIVVLLDSDTV-WPPNALPEMLKPFEDP----KVGGVGTNQRILRPR 120 (235)
T ss_pred CCChHHHHHHHHHH----hCCCEEEEECCCce-eChhHHHHHHHhccCC----CEeEEcCceEeecCc
Confidence 34699999999985 58999999999998 6899999999988887 899999999887664
No 33
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.71 E-value=2e-16 Score=167.58 Aligned_cols=126 Identities=21% Similarity=0.319 Sum_probs=96.5
Q ss_pred CCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCC
Q 001574 302 PNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPR 381 (1051)
Q Consensus 302 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR 381 (1051)
.+..|.|.|+|||+| |+ ..+..++.|+++.+||.+++.++|+|||+++-|.+.+.+
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~-------------------- 80 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE-------------------- 80 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH--------------------
Confidence 456889999999998 75 678999999999999988899999999988732211110
Q ss_pred CcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccC
Q 001574 382 APEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGS 461 (1051)
Q Consensus 382 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 461 (1051)
+.++
T Consensus 81 -----------------------------------------~~~~----------------------------------- 84 (251)
T cd06439 81 -----------------------------------------YADK----------------------------------- 84 (251)
T ss_pred -----------------------------------------HhhC-----------------------------------
Confidence 0000
Q ss_pred CCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCc
Q 001574 462 EGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKK 541 (1051)
Q Consensus 462 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~ 541 (1051)
++.++..+++ ..|++|+|.+++. .++++|+.+|+|.++ .|++|++.+..|.++ +
T Consensus 85 ------------~v~~i~~~~~-----~g~~~a~n~gi~~----a~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~----~ 138 (251)
T cd06439 85 ------------GVKLLRFPER-----RGKAAALNRALAL----ATGEIVVFTDANALL-DPDALRLLVRHFADP----S 138 (251)
T ss_pred ------------cEEEEEcCCC-----CChHHHHHHHHHH----cCCCEEEEEccccCc-CHHHHHHHHHHhcCC----C
Confidence 1344444432 3599999999995 578999999999985 699999999998776 7
Q ss_pred EEEEecCccccC
Q 001574 542 LCYVQFPQRFDG 553 (1051)
Q Consensus 542 vafVQ~PQ~F~n 553 (1051)
++.|+......+
T Consensus 139 ~~~v~~~~~~~~ 150 (251)
T cd06439 139 VGAVSGELVIVD 150 (251)
T ss_pred ccEEEeEEEecC
Confidence 888988776654
No 34
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.69 E-value=3e-15 Score=171.47 Aligned_cols=133 Identities=21% Similarity=0.194 Sum_probs=93.1
Q ss_pred CCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCC
Q 001574 302 PNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPR 381 (1051)
Q Consensus 302 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR 381 (1051)
++..|.|.|+||++| |. ..+..++-|+++.|||. ++.++|.|||..+-|.+-+.+
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~-------------------- 90 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA-------------------- 90 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH--------------------
Confidence 457899999999999 86 67789999999999995 589999999998733222111
Q ss_pred CcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccC
Q 001574 382 APEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGS 461 (1051)
Q Consensus 382 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 461 (1051)
+.++ .|.
T Consensus 91 -----------------------------------------~~~~---~~~----------------------------- 97 (384)
T TIGR03469 91 -----------------------------------------AARA---YGR----------------------------- 97 (384)
T ss_pred -----------------------------------------HHHh---cCC-----------------------------
Confidence 1000 000
Q ss_pred CCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCC-CCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCC
Q 001574 462 EGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLT-NAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGK 540 (1051)
Q Consensus 462 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~t-ngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~ 540 (1051)
-+++.++..+.+|. .-..|+.|||.+++.+.... .+++|+.+|+|.. .+|++|++.+..+.++
T Consensus 98 ----------~~~i~vi~~~~~~~-g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~---- 161 (384)
T TIGR03469 98 ----------GDRLTVVSGQPLPP-GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAE---- 161 (384)
T ss_pred ----------CCcEEEecCCCCCC-CCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhC----
Confidence 01345554433332 34578899999999643222 2899999999997 6899999999998876
Q ss_pred cEEEEecC
Q 001574 541 KLCYVQFP 548 (1051)
Q Consensus 541 ~vafVQ~P 548 (1051)
++++|..+
T Consensus 162 ~~~~vs~~ 169 (384)
T TIGR03469 162 GLDLVSLM 169 (384)
T ss_pred CCCEEEec
Confidence 44555443
No 35
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.62 E-value=2.9e-15 Score=153.44 Aligned_cols=50 Identities=32% Similarity=0.490 Sum_probs=45.8
Q ss_pred ccccchHHHHHHHhhCCcEEEEecCCCCcccccCCCCHHHHHHHhhhhhccc
Q 001574 747 GSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGS 798 (1051)
Q Consensus 747 gsvTED~~Tg~rL~~rGWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWa~G~ 798 (1051)
.+++||+++++++.++||++.|++.. .++.++|.|+.++++||+||+.|.
T Consensus 94 ~~~~ED~~l~~~l~~~G~~~~~~~~~--~~~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 94 FSIGEDMDLGFRLRRAGYRIVYVPDA--IVYTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred ccccchHHHHHHHHHCCCEEEEeccc--ceeeeCCCCHHHHHHHHHHHHhhh
Confidence 58999999999999999999999443 348999999999999999999998
No 36
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.61 E-value=2.1e-14 Score=150.36 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=62.8
Q ss_pred CCcHHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCCCC
Q 001574 695 GQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRP 774 (1051)
Q Consensus 695 G~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~ 774 (1051)
|....++++++.++||+++. -...||.+++++++++|+++.|+ |...
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~--------------------------------~~~~eD~~l~~r~~~~G~~~~~~-~~~~ 204 (249)
T cd02525 158 VHHGAYRREVFEKVGGFDES--------------------------------LVRNEDAELNYRLRKAGYKIWLS-PDIR 204 (249)
T ss_pred cccceEEHHHHHHhCCCCcc--------------------------------cCccchhHHHHHHHHcCcEEEEc-CCeE
Confidence 55556778888889988752 13469999999999999999999 4443
Q ss_pred cccccCCCCHHHHHHHhhhhhccchhhhhh
Q 001574 775 AFKGSAPINLSDRLHQVLRWALGSVEIFLS 804 (1051)
Q Consensus 775 af~G~aP~tl~~~l~QR~RWa~G~iQil~s 804 (1051)
+ ....|.+++.+++|+.||+.|..|.+..
T Consensus 205 ~-~~~~~~s~~~~~~~~~r~~~~~~~~~~~ 233 (249)
T cd02525 205 V-YYYPRSTLKKLARQYFRYGKWRARTLRK 233 (249)
T ss_pred E-EEcCCCCHHHHHHHHHHHhhhhHHHHHh
Confidence 3 6778999999999999999999999864
No 37
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=3e-12 Score=147.08 Aligned_cols=228 Identities=20% Similarity=0.371 Sum_probs=151.7
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhh-cCCCCCCcEEEEecCccccC
Q 001574 475 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGKKLCYVQFPQRFDG 553 (1051)
Q Consensus 475 lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~-~Dp~~g~~vafVQ~PQ~F~n 553 (1051)
+.|=-|.+ |-..||||+-...|-=+ +.-.|+++||||-+ -..+.+-+.+-.| -+| +.|.+||--.--|
T Consensus 214 ifYRrRr~----n~~RKaGNIaDfcrRwG--~~Y~~MlVLDADSv-Mtgd~lvrLv~~ME~~P----~aGlIQt~P~~~g 282 (736)
T COG2943 214 IFYRRRRR----NVKRKAGNIADFCRRWG--SAYSYMLVLDADSV-MTGDCLVRLVRLMEANP----DAGLIQTSPKASG 282 (736)
T ss_pred eeeehHhh----hhcccccCHHHHHHHhC--cccceEEEeecccc-cCchHHHHHHHHHhhCC----CCceeecchhhcC
Confidence 55555554 56789999999888533 44589999999997 5888998888888 577 8999998655444
Q ss_pred CCCCCcccchhhhHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccccc
Q 001574 554 IDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKK 633 (1051)
Q Consensus 554 id~~D~y~n~~~vffdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 633 (1051)
.| |+|-++.|=+ ..+-||+. +||-- .|- ++
T Consensus 283 g~---------TL~AR~qQFa-trvYGpl~-~~GLa-----------------------wW~-------~~--------- 312 (736)
T COG2943 283 GD---------TLYARCQQFA-TRVYGPLF-TAGLA-----------------------WWQ-------LG--------- 312 (736)
T ss_pred cc---------hHHHHHHHHH-HHHhchHH-hhhhH-----------------------HHh-------cc---------
Confidence 33 3443333311 12222221 11110 110 00
Q ss_pred CCCCcccccchhhhhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhcCCcHHHHhhhhhhcCCCCC
Q 001574 634 GDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPE 713 (1051)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s~l~e~GG~~~ 713 (1051)
| .+..|.+.++|..+..+.-|.|.
T Consensus 313 ----------------------------------------------E----------s~yWGHNAIIRt~aF~~hcgLp~ 336 (736)
T COG2943 313 ----------------------------------------------E----------SHYWGHNAIIRTKAFIEHCGLPP 336 (736)
T ss_pred ----------------------------------------------c----------cccccccceeechhhHHhcCCCC
Confidence 0 01236666666666655555443
Q ss_pred CCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCCCCcccccCCCCHHHHHHHhhh
Q 001574 714 GTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLR 793 (1051)
Q Consensus 714 ~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~af~G~aP~tl~~~l~QR~R 793 (1051)
- -.+-..| ...++.|+.-+-.|.+.||-+--. +++...|++.|.|+.|++++-+|
T Consensus 337 L------------------pG~~pFg------G~ilSHDfvEAALmRRaGW~v~ia-~dL~GSyEE~PpnLlD~l~RDRR 391 (736)
T COG2943 337 L------------------PGRGPFG------GHILSHDFVEAALMRRAGWGVWIA-YDLDGSYEELPPNLLDELKRDRR 391 (736)
T ss_pred C------------------CCCCCCC------ccccchHHHHHHHHhhcCceEEEe-ccCCCchhhCCchHHHHHhhhhH
Confidence 1 0011111 135889999999999999965444 77888899999999999999999
Q ss_pred hhccchhhhhhccCccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 001574 794 WALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTLPAICLLT 851 (1051)
Q Consensus 794 Wa~G~iQil~sk~~Pl~~g~~~~Lt~~QRL~Yl~~~ly~l~sl~~liylllPil~Llt 851 (1051)
|++|++|-+. ++ ..++|.|..|+.++.+++.|+++...++++++-.+....
T Consensus 392 WC~GNLqh~r-----l~--~~~GlHwvsR~h~~tGVmsYlsaPlWfl~ll~g~al~~~ 442 (736)
T COG2943 392 WCHGNLQHFR-----LF--LVKGLHWVSRAHFLTGVMSYLSAPLWFLFLLLGTALQAV 442 (736)
T ss_pred hhhcchhhce-----ee--ccCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 9999999873 33 168999999999999999988877666665555544433
No 38
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.43 E-value=1.2e-12 Score=135.15 Aligned_cols=115 Identities=16% Similarity=0.079 Sum_probs=80.8
Q ss_pred cEEEEeccCCCCCCCCCccchhhHHHHhhcc-------CCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEe
Q 001574 474 RLVYVSREKRPGYNHHKKAGAMNALVRVSAV-------LTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQ 546 (1051)
Q Consensus 474 ~lvYvsRekrpg~~hh~KAGalNallrvSa~-------~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ 546 (1051)
++.++.++... .+..|++|+|.+++.+.- -..+++|+++|+|.. ..|++|+++..+|.|| +++.||
T Consensus 51 ~v~~i~~~~~~--~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v~ 123 (191)
T cd06436 51 RVHLLRRHLPN--ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR-LDPNALEAVAPYFSDP----RVAGTQ 123 (191)
T ss_pred cEEEEeccCCc--CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC-cCHhHHHHHHHhhcCC----ceEEEe
Confidence 46667664311 234699999999986310 113489999999997 6999999988888888 899999
Q ss_pred cCccccCCCCCC--c-ccchhhhHHHhhcccccCCCCceeeccCceehhhhh
Q 001574 547 FPQRFDGIDRHD--R-YANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQAL 595 (1051)
Q Consensus 547 ~PQ~F~nid~~D--~-y~n~~~vffdi~~~glDg~qgp~yvGTgcvfRR~AL 595 (1051)
.+.++.|.+.+- + +..+...++.+++.++...+...+.|+|++|||+||
T Consensus 124 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l 175 (191)
T cd06436 124 SRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSAL 175 (191)
T ss_pred eeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHH
Confidence 999998865431 1 112233334455666666655557889999999887
No 39
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.32 E-value=7.9e-12 Score=127.47 Aligned_cols=61 Identities=15% Similarity=0.051 Sum_probs=46.6
Q ss_pred CCCccchhhHHHHhhc-cCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCccccCC
Q 001574 488 HHKKAGAMNALVRVSA-VLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGI 554 (1051)
Q Consensus 488 hh~KAGalNallrvSa-~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~ni 554 (1051)
+..|++|+|++++... .-.++++|+++|+|.. +.|++|++.+-.|.+. ...||......+.
T Consensus 61 ~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~-~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~ 122 (183)
T cd06438 61 RRGKGYALDFGFRHLLNLADDPDAVVVFDADNL-VDPNALEELNARFAAG-----ARVVQAYYNSKNP 122 (183)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC-CChhHHHHHHHHHhhC-----CCeeEEEEeeeCC
Confidence 4569999999988631 1257999999999998 5899999999988652 2467877666553
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.27 E-value=7.9e-11 Score=120.32 Aligned_cols=121 Identities=17% Similarity=0.234 Sum_probs=87.7
Q ss_pred CCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCccc
Q 001574 306 APVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEF 385 (1051)
Q Consensus 306 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~ 385 (1051)
|.|.|+|||+| |.+..+.+|+.|+++.+||. +.++|+|||...-+.+.+.+
T Consensus 1 p~vsiii~~~n---~~~~~l~~~l~sl~~q~~~~--~eiivvd~gs~d~~~~~~~~------------------------ 51 (202)
T cd04184 1 PLISIVMPVYN---TPEKYLREAIESVRAQTYPN--WELCIADDASTDPEVKRVLK------------------------ 51 (202)
T ss_pred CeEEEEEeccc---CcHHHHHHHHHHHHhCcCCC--eEEEEEeCCCCChHHHHHHH------------------------
Confidence 57999999998 76678899999999999984 68999999987521111111
Q ss_pred ccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccCCCCc
Q 001574 386 YFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGAL 465 (1051)
Q Consensus 386 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 465 (1051)
.+..+
T Consensus 52 ------------------------------------~~~~~--------------------------------------- 56 (202)
T cd04184 52 ------------------------------------KYAAQ--------------------------------------- 56 (202)
T ss_pred ------------------------------------HHHhc---------------------------------------
Confidence 00000
Q ss_pred cccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhh-cCCCCCCcEEE
Q 001574 466 DVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGKKLCY 544 (1051)
Q Consensus 466 d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~-~Dp~~g~~vaf 544 (1051)
.|++.++..+. ...+|.|+|.+++. +.++||+.+|+|.+ ..|++|.+.+-.+ .+| +++.
T Consensus 57 ------~~~~~~~~~~~-----~~g~~~a~n~g~~~----a~~d~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~~~~ 116 (202)
T cd04184 57 ------DPRIKVVFREE-----NGGISAATNSALEL----ATGEFVALLDHDDE-LAPHALYEVVKALNEHP----DADL 116 (202)
T ss_pred ------CCCEEEEEccc-----CCCHHHHHHHHHHh----hcCCEEEEECCCCc-CChHHHHHHHHHHHhCC----CCCE
Confidence 01344554443 34579999999985 57899999999997 6999999999987 676 5667
Q ss_pred EecCcc
Q 001574 545 VQFPQR 550 (1051)
Q Consensus 545 VQ~PQ~ 550 (1051)
|+.+..
T Consensus 117 v~~~~~ 122 (202)
T cd04184 117 IYSDED 122 (202)
T ss_pred EEccHH
Confidence 755444
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.21 E-value=2.8e-10 Score=116.39 Aligned_cols=64 Identities=17% Similarity=0.151 Sum_probs=50.7
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhc-CCCCCCcEEEEecCcccc
Q 001574 475 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLM-DPQLGKKLCYVQFPQRFD 552 (1051)
Q Consensus 475 lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~-Dp~~g~~vafVQ~PQ~F~ 552 (1051)
+.|+.+++. ..+++|+|.+++. +.|+||+.+|+|.+ ..|++|.+++.+|. +| +++.|.......
T Consensus 57 i~~i~~~~n-----~G~~~a~N~g~~~----a~gd~i~~lD~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~ 121 (201)
T cd04195 57 LKVVPLEKN-----RGLGKALNEGLKH----CTYDWVARMDTDDI-SLPDRFEKQLDFIEKNP----EIDIVGGGVLEF 121 (201)
T ss_pred eEEEEcCcc-----ccHHHHHHHHHHh----cCCCEEEEeCCccc-cCcHHHHHHHHHHHhCC----CeEEEcccEEEE
Confidence 566766653 3579999999984 68999999999997 68999999999884 55 677887765543
No 42
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.14 E-value=1.8e-11 Score=101.00 Aligned_cols=48 Identities=42% Similarity=1.066 Sum_probs=30.6
Q ss_pred ccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCccccc
Q 001574 40 CRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYK 90 (1051)
Q Consensus 40 C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Yk 90 (1051)
|.+|.+++ +++|..|.|| ||+|.|||.||...++++++.||+||++||
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 77899997 8899999999 999999999999999889999999999996
No 43
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.10 E-value=4.3e-10 Score=116.39 Aligned_cols=60 Identities=17% Similarity=0.080 Sum_probs=51.6
Q ss_pred CCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCccccCCC
Q 001574 488 HHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGID 555 (1051)
Q Consensus 488 hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~nid 555 (1051)
-+.|..||-++++. ....++|+++|+|+. .+|++|++.+.-|.|| +++.|-.+.++.+.+
T Consensus 15 ~N~Kv~nL~~~~~~---~a~~d~~~~~DsDi~-v~p~~L~~lv~~l~~p----~vglVt~~~~~~~~~ 74 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA---GAKYDYLVISDSDIR-VPPDYLRELVAPLADP----GVGLVTGLPRGVPAR 74 (175)
T ss_pred CChHHHHHHHHHHh---hCCCCEEEEECCCee-ECHHHHHHHHHHHhCC----CCcEEEecccccCCc
Confidence 57899999999984 278999999999998 5899999999999999 899998877755433
No 44
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.06 E-value=2.3e-09 Score=108.05 Aligned_cols=54 Identities=19% Similarity=0.075 Sum_probs=41.8
Q ss_pred CccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhh-hhcCCCCCCcEEEEecCcccc
Q 001574 490 KKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMC-FLMDPQLGKKLCYVQFPQRFD 552 (1051)
Q Consensus 490 ~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amc-f~~Dp~~g~~vafVQ~PQ~F~ 552 (1051)
.+++|+|.+++. ..++||+.+|+|.. ..++.+.+.+. +..++ +...|.....+.
T Consensus 62 g~~~a~n~~~~~----a~~~~v~~ld~D~~-~~~~~~~~~~~~~~~~~----~~~~v~g~~~~~ 116 (202)
T cd06433 62 GIYDAMNKGIAL----ATGDIIGFLNSDDT-LLPGALLAVVAAFAEHP----EVDVVYGDVLLV 116 (202)
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCcc-cCchHHHHHHHHHHhCC----CccEEEeeeEEE
Confidence 579999999984 68999999999998 57889999984 44565 566666555443
No 45
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.97 E-value=1.4e-08 Score=105.33 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=34.5
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001574 308 VDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASM 353 (1051)
Q Consensus 308 VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ 353 (1051)
|.|+||++| |+. .+..|+.|+++..|+ ...++|.|||...
T Consensus 1 vsvii~~~n---~~~-~l~~~l~sl~~q~~~--~~evivvdd~s~d 40 (221)
T cd02522 1 LSIIIPTLN---EAE-NLPRLLASLRRLNPL--PLEIIVVDGGSTD 40 (221)
T ss_pred CEEEEEccC---cHH-HHHHHHHHHHhccCC--CcEEEEEeCCCCc
Confidence 579999998 765 679999999999984 5789999999876
No 46
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=98.95 E-value=1.9e-08 Score=101.21 Aligned_cols=42 Identities=14% Similarity=0.321 Sum_probs=36.5
Q ss_pred CCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCC
Q 001574 489 HKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDP 536 (1051)
Q Consensus 489 h~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp 536 (1051)
..+++|+|.+++. ++++||+.+|+|-. +.|++|.+.+-++ ++
T Consensus 65 ~~~~~~~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~~~~~~-~~ 106 (182)
T cd06420 65 FRKAKIRNKAIAA----AKGDYLIFIDGDCI-PHPDFIADHIELA-EP 106 (182)
T ss_pred hhHHHHHHHHHHH----hcCCEEEEEcCCcc-cCHHHHHHHHHHh-CC
Confidence 3689999999994 78999999999997 6899999999877 44
No 47
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.95 E-value=8e-09 Score=105.93 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=48.9
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhh-hcCCCCCCcEEEEecCcccc
Q 001574 475 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCF-LMDPQLGKKLCYVQFPQRFD 552 (1051)
Q Consensus 475 lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf-~~Dp~~g~~vafVQ~PQ~F~ 552 (1051)
+.++..++ .+.+++|+|.+++. ++++||+++|+|-+ ..|+.|.+.+-. +.+| +.+++.....+.
T Consensus 56 ~~~~~~~~-----~~G~~~~~n~g~~~----~~g~~v~~ld~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~ 120 (214)
T cd04196 56 IILIRNGK-----NLGVARNFESLLQA----ADGDYVFFCDQDDI-WLPDKLERLLKAFLKDD----KPLLVYSDLELV 120 (214)
T ss_pred EEEEeCCC-----CccHHHHHHHHHHh----CCCCEEEEECCCcc-cChhHHHHHHHHHhcCC----CceEEecCcEEE
Confidence 44454444 34689999999884 78999999999997 589999999998 4555 677777776543
No 48
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=98.95 E-value=1.3e-08 Score=112.31 Aligned_cols=109 Identities=19% Similarity=0.117 Sum_probs=82.4
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCccccccc
Q 001574 310 VFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEFYFSQ 389 (1051)
Q Consensus 310 vfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~YFs~ 389 (1051)
|+|||+| |++..+..||-|+++..||.....|+|.|||+..-|.+.+.+.
T Consensus 2 IIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~--------------------------- 51 (299)
T cd02510 2 VIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEE--------------------------- 51 (299)
T ss_pred EEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHH---------------------------
Confidence 7899999 8889999999999999998666789999999987333222110
Q ss_pred ccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCCchhhHhhccCCCCccccC
Q 001574 390 KIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEG 469 (1051)
Q Consensus 390 k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~~ 469 (1051)
.. .
T Consensus 52 ---------------------------------~~-~------------------------------------------- 54 (299)
T cd02510 52 ---------------------------------YY-K------------------------------------------- 54 (299)
T ss_pred ---------------------------------HH-h-------------------------------------------
Confidence 00 0
Q ss_pred CCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcC
Q 001574 470 KELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMD 535 (1051)
Q Consensus 470 ~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~D 535 (1051)
...|++.++..++ ...++.|.|.+++. +.|+||+.||+|.. +.+++|.+.+-.+..
T Consensus 55 ~~~~~v~vi~~~~-----n~G~~~a~N~g~~~----A~gd~i~fLD~D~~-~~~~wL~~ll~~l~~ 110 (299)
T cd02510 55 KYLPKVKVLRLKK-----REGLIRARIAGARA----ATGDVLVFLDSHCE-VNVGWLEPLLARIAE 110 (299)
T ss_pred hcCCcEEEEEcCC-----CCCHHHHHHHHHHH----ccCCEEEEEeCCcc-cCccHHHHHHHHHHh
Confidence 0123466665554 23588999999995 68999999999998 589999999988754
No 49
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.90 E-value=2.5e-08 Score=97.52 Aligned_cols=52 Identities=15% Similarity=0.057 Sum_probs=41.0
Q ss_pred CCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecC
Q 001574 489 HKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFP 548 (1051)
Q Consensus 489 h~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~P 548 (1051)
..+++|+|.+++. .++++|+.+|+|.+ +.++++.+.+-.+.+. ++++.|+..
T Consensus 60 ~g~~~a~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~---~~~~~~~~~ 111 (166)
T cd04186 60 LGFGAGNNQGIRE----AKGDYVLLLNPDTV-VEPGALLELLDAAEQD---PDVGIVGPK 111 (166)
T ss_pred cChHHHhhHHHhh----CCCCEEEEECCCcE-ECccHHHHHHHHHHhC---CCceEEEcc
Confidence 4589999999995 48999999999998 6889999998765432 266666655
No 50
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=98.84 E-value=8.3e-07 Score=105.91 Aligned_cols=53 Identities=25% Similarity=0.287 Sum_probs=45.1
Q ss_pred cccchHHHHHHHhhC--CcEEEEecCCCCcccccCCCCHHHHHHHhhhhhccchhhh
Q 001574 748 SITEDILTGFKMHCR--GWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIF 802 (1051)
Q Consensus 748 svTED~~Tg~rL~~r--GWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWa~G~iQil 802 (1051)
.+.||=.++..|.++ |||..|+..+. | +..+|++++.+++||+||..|.+--+
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~~~A~-a-~T~aP~t~~vflsQRRRWinSTi~Nl 378 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYVPSAV-A-YTDAPETFSVFLSQRRRWINSTIHNL 378 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEccccc-c-cccCCccHHHHHHHhhhccchhHhhH
Confidence 578998888777776 89999995544 3 89999999999999999999998554
No 51
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.83 E-value=9.5e-08 Score=102.33 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=44.9
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEec
Q 001574 475 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQF 547 (1051)
Q Consensus 475 lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~ 547 (1051)
+.++.+++. ..|++|+|++++. +.|+||+.+|+|.. .+|++|.+.+-.+.++ +...|.-
T Consensus 70 v~~~~~~~n-----~G~~~a~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g 128 (243)
T PLN02726 70 ILLRPRPGK-----LGLGTAYIHGLKH----ASGDFVVIMDADLS-HHPKYLPSFIKKQRET----GADIVTG 128 (243)
T ss_pred EEEEecCCC-----CCHHHHHHHHHHH----cCCCEEEEEcCCCC-CCHHHHHHHHHHHHhc----CCcEEEE
Confidence 555555442 3488999999984 68999999999998 6999999999887664 3445544
No 52
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.82 E-value=5.3e-08 Score=102.25 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=37.9
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHh
Q 001574 475 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAM 530 (1051)
Q Consensus 475 lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~am 530 (1051)
+.++..++.. .+|+|+|.+++.+.- .+++||+.+|+|.+ .+|++|.+.+
T Consensus 49 i~~i~~~~n~-----G~~~a~N~g~~~a~~-~~~d~v~~lD~D~~-~~~~~l~~l~ 97 (237)
T cd02526 49 IELIHLGENL-----GIAKALNIGIKAALE-NGADYVLLFDQDSV-PPPDMVEKLL 97 (237)
T ss_pred EEEEECCCce-----ehHHhhhHHHHHHHh-CCCCEEEEECCCCC-cCHhHHHHHH
Confidence 5667665533 399999999985321 25699999999998 5899999985
No 53
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.82 E-value=1e-07 Score=98.06 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=47.1
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCcccc
Q 001574 475 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFD 552 (1051)
Q Consensus 475 lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~ 552 (1051)
+.|+.-++. +..|.++|.++...- ...++|++.+|+|.+ ..|++|++.+-.+.+| +++.| +|.++.
T Consensus 53 i~~~~~~~n-----~g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~~-~~~~~~ 118 (202)
T cd04185 53 IVYLRLPEN-----LGGAGGFYEGVRRAY-ELGYDWIWLMDDDAI-PDPDALEKLLAYADKD----NPQFL-APLVLD 118 (202)
T ss_pred eEEEECccc-----cchhhHHHHHHHHHh-ccCCCEEEEeCCCCC-cChHHHHHHHHHHhcC----CceEe-cceeEc
Confidence 455555442 346788898887532 457899999999997 6899999999988776 55555 344443
No 54
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.81 E-value=7.4e-09 Score=100.38 Aligned_cols=110 Identities=16% Similarity=0.108 Sum_probs=77.2
Q ss_pred cEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCccccC
Q 001574 474 RLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDG 553 (1051)
Q Consensus 474 ~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~n 553 (1051)
++.|+.+++ +. .+++|+|.+++. ..++||+.+|+|.+ ..+++|.+.+.++.++ +..+.+...+....+
T Consensus 54 ~i~~i~~~~----n~-g~~~~~n~~~~~----a~~~~i~~ld~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~ 121 (169)
T PF00535_consen 54 NIRYIRNPE----NL-GFSAARNRGIKH----AKGEYILFLDDDDI-ISPDWLEELVEALEKN--PPDVVIGSVIYIDDD 121 (169)
T ss_dssp TEEEEEHCC----CS-HHHHHHHHHHHH------SSEEEEEETTEE-E-TTHHHHHHHHHHHC--TTEEEEEEEEEEECT
T ss_pred ccccccccc----cc-cccccccccccc----cceeEEEEeCCCce-EcHHHHHHHHHHHHhC--CCcEEEEEEEEecCC
Confidence 588999887 33 799999999995 78889999999998 4777999999999874 224555555544444
Q ss_pred CCCCCccc--chhhhHHHhhcccccCCCCceeeccCceehhhhh
Q 001574 554 IDRHDRYA--NRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQAL 595 (1051)
Q Consensus 554 id~~D~y~--n~~~vffdi~~~glDg~qgp~yvGTgcvfRR~AL 595 (1051)
........ .....++............+.++|.++++||++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~ 165 (169)
T PF00535_consen 122 NRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVF 165 (169)
T ss_dssp TETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHH
T ss_pred ccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHH
Confidence 33322211 1223444455666777888999999999999998
No 55
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.80 E-value=8e-08 Score=100.56 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=34.7
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchh
Q 001574 310 VFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASML 354 (1051)
Q Consensus 310 vfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~l 354 (1051)
|+||++| ++ ..+..|+-|+++.+|| +...++|.|||...-
T Consensus 1 ViIp~yn---~~-~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~ 40 (219)
T cd06913 1 IILPVHN---GE-QWLDECLESVLQQDFE-GTLELSVFNDASTDK 40 (219)
T ss_pred CEEeecC---cH-HHHHHHHHHHHhCCCC-CCEEEEEEeCCCCcc
Confidence 5799998 54 7899999999999999 468999999998874
No 56
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.72 E-value=1.7e-07 Score=97.48 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=45.8
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecC
Q 001574 475 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFP 548 (1051)
Q Consensus 475 lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~P 548 (1051)
+.++..+++ ..+++|+|.+++. +.++||+.+|+|.. .+|++|...+..+.++ +...|..+
T Consensus 55 i~~~~~~~n-----~G~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 114 (224)
T cd06442 55 VRLIVRPGK-----RGLGSAYIEGFKA----ARGDVIVVMDADLS-HPPEYIPELLEAQLEG----GADLVIGS 114 (224)
T ss_pred eEEEecCCC-----CChHHHHHHHHHH----cCCCEEEEEECCCC-CCHHHHHHHHHHHhcC----CCCEEEEe
Confidence 445555543 3589999999985 67899999999987 6899999999987765 34455544
No 57
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.68 E-value=1.2e-07 Score=91.59 Aligned_cols=108 Identities=26% Similarity=0.311 Sum_probs=64.6
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHh-hhhcCCCCCCcEEEEecCccccC
Q 001574 475 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAM-CFLMDPQLGKKLCYVQFPQRFDG 553 (1051)
Q Consensus 475 lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~am-cf~~Dp~~g~~vafVQ~PQ~F~n 553 (1051)
.+++..++. ..|+.|+|.+++. .+++||+.+|+|.+ ..+++|.+.+ .++.++ +++.|...+...+
T Consensus 55 ~~~~~~~~~-----~g~~~~~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~v~~~~~~~~ 120 (180)
T cd06423 55 VLVVRDKEN-----GGKAGALNAGLRH----AKGDIVVVLDADTI-LEPDALKRLVVPFFADP----KVGAVQGRVRVRN 120 (180)
T ss_pred EEEEEeccc-----CCchHHHHHHHHh----cCCCEEEEECCCCC-cChHHHHHHHHHhccCC----CeeeEeeeEEEec
Confidence 455555543 4599999999995 48999999999998 5899999994 455665 5666655444433
Q ss_pred CCCC--Cc-ccchhhhHHHhhcccccCC-CCceeeccCceehhhhhc
Q 001574 554 IDRH--DR-YANRNIVFFDINMLGLDGI-QGPVYVGTGCVFNRQALY 596 (1051)
Q Consensus 554 id~~--D~-y~n~~~vffdi~~~glDg~-qgp~yvGTgcvfRR~ALy 596 (1051)
...+ .. ........+.....+.... .-..+.|++.++||++|.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 167 (180)
T cd06423 121 GSENLLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAFGAFRREALR 167 (180)
T ss_pred CcCcceeccchheecceeeeeeehhheecceeecCchHHHHHHHHHH
Confidence 2211 00 0001111111111111111 225567888999999985
No 58
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.48 E-value=1.4e-06 Score=90.69 Aligned_cols=52 Identities=17% Similarity=0.076 Sum_probs=41.3
Q ss_pred CccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCcc
Q 001574 490 KKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQR 550 (1051)
Q Consensus 490 ~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~ 550 (1051)
.|++|+|.+++. +.++||+.+|+|-. ..|+++.+.+..+.++ ....|..+..
T Consensus 69 G~~~a~~~g~~~----a~gd~i~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~r~ 120 (211)
T cd04188 69 GKGGAVRAGMLA----ARGDYILFADADLA-TPFEELEKLEEALKTS----GYDIAIGSRA 120 (211)
T ss_pred CcHHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEee
Confidence 489999999995 67899999999997 6899999999987654 3344554433
No 59
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.47 E-value=9.5e-07 Score=88.95 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=65.4
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCccccCC
Q 001574 475 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGI 554 (1051)
Q Consensus 475 lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~ni 554 (1051)
+.++-.+++. .|++|+|.+++. +.+++|+.+|+|-. ..|++|.+.+-.+..+ +..+|+-+..+.+.
T Consensus 56 ~~~~~~~~n~-----G~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~~~~~~~ 121 (185)
T cd04179 56 VRVIRLSRNF-----GKGAAVRAGFKA----ARGDIVVTMDADLQ-HPPEDIPKLLEKLLEG----GADVVIGSRFVRGG 121 (185)
T ss_pred eEEEEccCCC-----CccHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEeecCCC
Confidence 4555555543 399999999984 67899999999987 5899999999986654 46677777655443
Q ss_pred CC-CCcccchhhhHHHhhcccccCCCCceeeccCceehhhhhcC
Q 001574 555 DR-HDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYG 597 (1051)
Q Consensus 555 d~-~D~y~n~~~vffdi~~~glDg~qgp~yvGTgcvfRR~ALyg 597 (1051)
.. ...+.....-.+......+.+..-....|...++||++|-.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 165 (185)
T cd04179 122 GAGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEA 165 (185)
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHH
Confidence 21 11111111111111111122333333334445799999854
No 60
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=98.41 E-value=4.6e-06 Score=91.17 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=49.5
Q ss_pred cEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCcccc
Q 001574 474 RLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFD 552 (1051)
Q Consensus 474 ~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~ 552 (1051)
.+.|+..++. ...|||+|.+++.. .-.+++||+.+|.|-+ +.+++|.+.+.++..+ +.+++.|. |..++
T Consensus 46 ~i~~i~~~~N-----~G~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~-~~~~~ 114 (281)
T TIGR01556 46 KIALIHLGDN-----QGIAGAQNQGLDAS-FRRGVQGVLLLDQDSR-PGNAFLAAQWKLLSAE--NGQACALG-PRFFD 114 (281)
T ss_pred CeEEEECCCC-----cchHHHHHHHHHHH-HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHhc--CCceEEEC-CeEEc
Confidence 4667765543 35899999998853 1237899999999998 5799999999887542 23678776 44433
No 61
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.36 E-value=5.8e-06 Score=93.72 Aligned_cols=44 Identities=7% Similarity=0.161 Sum_probs=38.7
Q ss_pred CCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001574 304 RLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASM 353 (1051)
Q Consensus 304 ~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ 353 (1051)
..|.|.|+||+|| ++ ..+..++-|+++..|+ .+.++|.|||+..
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD 47 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTD 47 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCc
Confidence 3578999999998 55 6889999999999997 4789999999887
No 62
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.22 E-value=1.2e-05 Score=81.41 Aligned_cols=104 Identities=15% Similarity=0.245 Sum_probs=63.9
Q ss_pred cEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCccccC
Q 001574 474 RLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDG 553 (1051)
Q Consensus 474 ~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~n 553 (1051)
++.++..++ +..|++|+|++++. +.+++|+.+|+|.. ..+++|.+.+.. +++ +.++.+...... +
T Consensus 56 ~i~~i~~~~-----n~G~~~a~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~-~~~--~~~~v~g~~~~~--~ 120 (181)
T cd04187 56 RVKVIRLSR-----NFGQQAALLAGLDH----ARGDAVITMDADLQ-DPPELIPEMLAK-WEE--GYDVVYGVRKNR--K 120 (181)
T ss_pred CEEEEEecC-----CCCcHHHHHHHHHh----cCCCEEEEEeCCCC-CCHHHHHHHHHH-HhC--CCcEEEEEecCC--c
Confidence 356665544 23599999999985 67899999999997 589999999987 443 234544433222 1
Q ss_pred CCC-CCcccchhhhHHHhhcccccCCCCceeeccCceehhhhhc
Q 001574 554 IDR-HDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALY 596 (1051)
Q Consensus 554 id~-~D~y~n~~~vffdi~~~glDg~qgp~yvGTgcvfRR~ALy 596 (1051)
+. ..++.+ ..++. ....+.+..-+...|+..++||+++-
T Consensus 121 -~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 121 -ESWLKRLTS--KLFYR-LINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred -chHHHHHHH--HHHHH-HHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 11 011111 11111 12223444555666777899999985
No 63
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.19 E-value=3.5e-05 Score=84.07 Aligned_cols=45 Identities=16% Similarity=0.041 Sum_probs=35.5
Q ss_pred CCeeEEEecCCCCCCCHHHHHHHHHHHHcC-CCCCCCcEEEEecCCCchh
Q 001574 306 APVDVFVSTVDPLKEPPIITANTVLSILSM-DYPVDKVSCYVSDDGASML 354 (1051)
Q Consensus 306 p~VDvfV~T~dp~kEpp~v~~nTvls~la~-DYP~~kl~~yvsDDG~~~l 354 (1051)
|.|.|+|||+| |+ ..+..|+-|++++ ..+...+.++|.|||..+-
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~ 46 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDG 46 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCccc
Confidence 56899999998 64 5789999999864 2333468899999999873
No 64
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.14 E-value=3.5e-05 Score=72.67 Aligned_cols=52 Identities=27% Similarity=0.298 Sum_probs=41.2
Q ss_pred CCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhh-hhcCCCCCCcEEEEecC
Q 001574 488 HHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMC-FLMDPQLGKKLCYVQFP 548 (1051)
Q Consensus 488 hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amc-f~~Dp~~g~~vafVQ~P 548 (1051)
+..|++++|.++.. .++++++++|+|.+ ..|+++...+- +..++ +...|+.+
T Consensus 62 ~~g~~~~~~~~~~~----~~~d~v~~~d~D~~-~~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 62 NQGLAAARNAGLKA----ARGEYILFLDADDL-LLPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred CCChHHHHHHHHHH----hcCCEEEEECCCCc-cCccHHHHHHHHHhcCC----CceEEecc
Confidence 45799999999985 47999999999997 58888888744 44554 67778777
No 65
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.12 E-value=4.3e-05 Score=94.80 Aligned_cols=49 Identities=24% Similarity=0.342 Sum_probs=44.3
Q ss_pred cccchHHHHHHHhhCCcEEEEecCCCCcccccCCCCHHHHHHHhhhhhccc
Q 001574 748 SITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGS 798 (1051)
Q Consensus 748 svTED~~Tg~rL~~rGWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWa~G~ 798 (1051)
+..||=.+..++..+||+.-|+.... | ...+|+++.+++.||+||..|.
T Consensus 549 ~~geDR~L~~~llskgy~l~Y~a~s~-a-~t~~Pe~~~efl~QrrRW~~s~ 597 (862)
T KOG2571|consen 549 SLGEDRWLCTLLLSKGYRLKYVAASD-A-ETEAPESFLEFLNQRRRWLNSI 597 (862)
T ss_pred ccchhHHHHHHHHhccceeeeecccc-c-cccCcHhHHHHHHHhhhhcccc
Confidence 58899999999999999999995443 3 8999999999999999999993
No 66
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.06 E-value=8.7e-05 Score=84.51 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=35.4
Q ss_pred CCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcC
Q 001574 489 HKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMD 535 (1051)
Q Consensus 489 h~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~D 535 (1051)
..|++|+|++++. +.|++|+++|+|.. .+++.+.+.+-.+.+
T Consensus 148 ~G~~~A~~~Gi~~----a~gd~I~~~DaD~~-~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 148 KGKGGAVRIGMLA----SRGKYILMVDADGA-TDIDDFDKLEDIMLK 189 (333)
T ss_pred CChHHHHHHHHHH----ccCCEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 3699999999985 57999999999997 688898888877653
No 67
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.03 E-value=3.3e-05 Score=85.99 Aligned_cols=51 Identities=12% Similarity=0.223 Sum_probs=41.5
Q ss_pred cEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhc
Q 001574 474 RLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLM 534 (1051)
Q Consensus 474 ~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~ 534 (1051)
++.|+..++. ..+|.|+|.++.. .+|+||+.+|+|.+ ..|+.|.+.+-++.
T Consensus 61 ri~~i~~~~n-----~G~~~a~N~gi~~----a~g~~I~~lDaDD~-~~p~~l~~~~~~~~ 111 (279)
T PRK10018 61 RITYIHNDIN-----SGACAVRNQAIML----AQGEYITGIDDDDE-WTPNRLSVFLAHKQ 111 (279)
T ss_pred CEEEEECCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCCC-CCccHHHHHHHHHH
Confidence 5778776553 3588999999984 79999999999998 47899998888764
No 68
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.03 E-value=0.00011 Score=81.38 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=45.1
Q ss_pred CCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEEecCccccCCC
Q 001574 489 HKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGID 555 (1051)
Q Consensus 489 h~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafVQ~PQ~F~nid 555 (1051)
-.+|.|.|.++.. +++++|+.+|+|.+ +.|+++.+++-+...= ....-+++-.|-.|.+.+
T Consensus 74 f~~a~arN~g~~~----A~~d~l~flD~D~i-~~~~~i~~~~~~~~~l-~~~~~~~~~~p~~yl~~~ 134 (281)
T PF10111_consen 74 FSRAKARNIGAKY----ARGDYLIFLDADCI-PSPDFIEKLLNHVKKL-DKNPNAFLVYPCLYLSEE 134 (281)
T ss_pred cCHHHHHHHHHHH----cCCCEEEEEcCCee-eCHHHHHHHHHHHHHH-hcCCCceEEEeeeeccch
Confidence 3789999999984 69999999999997 6899999999932211 111345666676666544
No 69
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=97.96 E-value=0.00025 Score=79.27 Aligned_cols=69 Identities=20% Similarity=0.233 Sum_probs=49.6
Q ss_pred CcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCC-EEEEecCCCCCChHHHHHHHhhhhc-CCCCCCcEEEEecCcc
Q 001574 473 PRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAP-FILNLDCDHYLNNSKAVREAMCFLM-DPQLGKKLCYVQFPQR 550 (1051)
Q Consensus 473 P~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp-~il~lDcD~~~~~~~~Lr~amcf~~-Dp~~g~~vafVQ~PQ~ 550 (1051)
|.+.|+.-.+.-| =||+.|.+++.. +.++. |++.|+-|.+ .++++|.+.+-.+. +| .++.|+.-.+
T Consensus 56 ~~v~~i~~~~NlG-----~agg~n~g~~~a--~~~~~~~~l~LN~D~~-~~~~~l~~ll~~~~~~~----~~~~~~~~i~ 123 (305)
T COG1216 56 PNVRLIENGENLG-----FAGGFNRGIKYA--LAKGDDYVLLLNPDTV-VEPDLLEELLKAAEEDP----AAGVVGPLIR 123 (305)
T ss_pred CcEEEEEcCCCcc-----chhhhhHHHHHH--hcCCCcEEEEEcCCee-eChhHHHHHHHHHHhCC----CCeEeeeeEe
Confidence 3466666555444 478888777752 34543 9999999965 79999999998774 44 7888888777
Q ss_pred ccC
Q 001574 551 FDG 553 (1051)
Q Consensus 551 F~n 553 (1051)
.++
T Consensus 124 ~~~ 126 (305)
T COG1216 124 NYD 126 (305)
T ss_pred cCC
Confidence 654
No 70
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=97.84 E-value=8.2e-05 Score=83.86 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=42.3
Q ss_pred CCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhc-CCCCCCcEEEEec
Q 001574 489 HKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLM-DPQLGKKLCYVQF 547 (1051)
Q Consensus 489 h~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~-Dp~~g~~vafVQ~ 547 (1051)
..|++|+|++++. ++|++|+.+|+|....+|++|.+.+..+. || ++.+|..
T Consensus 101 ~Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~----~~~~V~g 152 (306)
T PRK13915 101 PGKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTDP----GVHLVKA 152 (306)
T ss_pred CCHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhCC----CceEEEE
Confidence 4699999999884 68999999999985358999999998775 77 6777764
No 71
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.01 E-value=0.0044 Score=70.49 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=35.6
Q ss_pred CCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhc
Q 001574 489 HKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLM 534 (1051)
Q Consensus 489 h~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~ 534 (1051)
..|++|+|++++. +.|++++.+|||.. .+|+.+.+.+-.+.
T Consensus 76 ~G~~~A~~~G~~~----A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 76 YGQHSAIMAGFSH----VTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred CCHHHHHHHHHHh----CCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 3688999999985 68999999999997 78999999888764
No 72
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.69 E-value=0.00067 Score=75.77 Aligned_cols=48 Identities=29% Similarity=0.944 Sum_probs=43.7
Q ss_pred cccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCcccc
Q 001574 39 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRY 89 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Y 89 (1051)
.|..|=+.+..+ ..-|.+| -|||.|||.||.--|.+=|+.||.|+..|
T Consensus 16 ~cplcie~mdit--dknf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDIT--DKNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cCcccccccccc--cCCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 699999997765 4569999 99999999999999999999999999999
No 73
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.69 E-value=0.011 Score=56.66 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=38.8
Q ss_pred CCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001574 305 LAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASM 353 (1051)
Q Consensus 305 lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ 353 (1051)
.|.+.|+|||+| |+ .....+|.|++...|+. ..+.|.|||...
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d 44 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTD 44 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCC
Confidence 578999999998 65 89999999999999997 459999999997
No 74
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=96.59 E-value=0.03 Score=64.30 Aligned_cols=157 Identities=27% Similarity=0.417 Sum_probs=109.4
Q ss_pred CCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEE-ecCccccCCCCCCcccchhhh
Q 001574 488 HHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYV-QFPQRFDGIDRHDRYANRNIV 566 (1051)
Q Consensus 488 hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafV-Q~PQ~F~nid~~D~y~n~~~v 566 (1051)
-+-|--||=-+.|. ..-|+|++.|.|-. -.|+.+.+..-=||.|+ ++|+| |+|-.++-.-
T Consensus 155 ~npKInN~mpgy~~----a~ydlvlisDsgI~-m~pdtildm~t~M~she---kmalvtq~py~~dr~G----------- 215 (431)
T KOG2547|consen 155 LNPKINNMMPGYRA----AKYDLVLISDSGIF-MKPDTILDMATTMMSHE---KMALVTQTPYCKDRQG----------- 215 (431)
T ss_pred cChhhhccCHHHHH----hcCCEEEEecCCee-ecCchHHHHHHhhhccc---ceeeecCCceeecccc-----------
Confidence 45677777767774 56789999999987 58999999988999875 99998 8887775311
Q ss_pred HHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccccccCCCCcccccchhh
Q 001574 567 FFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTK 646 (1051)
Q Consensus 567 ffdi~~~glDg~qgp~yvGTgcvfRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (1051)
||.-+ .-+|-||- +-|--|-| +|- ..
T Consensus 216 -f~atl-------e~~~fgTs--h~r~yl~~--------------n~~----~~-------------------------- 241 (431)
T KOG2547|consen 216 -FDATL-------EQVYFGTS--HPRIYLSG--------------NVL----GF-------------------------- 241 (431)
T ss_pred -chhhh-------hheeeccC--CceEEEcc--------------ccc----cc--------------------------
Confidence 12111 11455543 22222211 000 00
Q ss_pred hhhccccccccCCCCCccchhHHhhhccchhhhhhhhhhhhhhhhhhc-CCcHHHHhhhhhhcCCCCCCCCchhHHHHHH
Q 001574 647 KKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRF-GQSPVFIASTLKEDGGLPEGTNSTSLIKEAI 725 (1051)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-G~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~ 725 (1051)
+.+ |-|+..|++++++.||+...
T Consensus 242 ---------------------------------------------~c~tgms~~mrK~~ld~~ggi~~f----------- 265 (431)
T KOG2547|consen 242 ---------------------------------------------NCSTGMSSMMRKEALDECGGISAF----------- 265 (431)
T ss_pred ---------------------------------------------cccccHHHHHHHHHHHHhccHHHH-----------
Confidence 011 66788899999999997531
Q ss_pred HhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecCCCCcccccCCCCHHHHHHHhhhhh
Q 001574 726 HVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWA 795 (1051)
Q Consensus 726 ~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWa 795 (1051)
| +.+.||...+=.+..+||++.+.+-. +-...+-.++..+..|-.||.
T Consensus 266 -----------------~---~yLaedyFaaksllSRG~ksaist~p--alQnSas~~mssf~~Ri~rwv 313 (431)
T KOG2547|consen 266 -----------------G---GYLAEDYFAAKSLLSRGWKSAISTHP--ALQNSASVTMSSFLDRIIRWV 313 (431)
T ss_pred -----------------H---HHHHHHHHHHHHHHhhhhhhhhcccc--hhhhhhhhHHHHHHHHHHHhh
Confidence 2 38999999999999999999998532 225677788999999999997
No 75
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.15 E-value=0.035 Score=59.35 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=35.6
Q ss_pred CccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCC
Q 001574 490 KKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDP 536 (1051)
Q Consensus 490 ~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp 536 (1051)
..+.+.|.++.. ..+++|+.+|+|.. ..++.+.+...++.++
T Consensus 58 g~~~~~n~~~~~----a~~d~vl~lDaD~~-~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 58 GFGAQRNFALEL----ATNDWVLSLDADER-LTPELADEILALLATD 99 (229)
T ss_pred ChHHHHHHHHHh----CCCCEEEEEeCCcC-cCHHHHHHHHHHHhCC
Confidence 578899998883 67899999999998 5889999998888654
No 76
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.39 E-value=0.01 Score=50.88 Aligned_cols=45 Identities=38% Similarity=0.904 Sum_probs=37.2
Q ss_pred CCcccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCC--Ccccc
Q 001574 37 SKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPG--CNTRY 89 (1051)
Q Consensus 37 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPq--Ckt~Y 89 (1051)
+..|.+||+.+- +|++.|.|.+|+=|-=|+||+++ +.|-- |++++
T Consensus 5 ~~~C~~Cg~~~~---~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKFK---DGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred CccChhhCCccc---CCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 568999999974 48899999999999999999876 45655 77665
No 77
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.22 E-value=0.019 Score=64.98 Aligned_cols=59 Identities=24% Similarity=0.528 Sum_probs=50.9
Q ss_pred CCCcccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCccccccccCcc
Q 001574 36 GSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRHKGCA 96 (1051)
Q Consensus 36 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~kgsp 96 (1051)
..+.|.+|-.+..++.+=.+++. +|+-..|+.|.+---+.|.+.||+|+++.++.+=.|
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence 35799999999999888888887 999999999998877789999999999998764333
No 78
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=93.98 E-value=0.62 Score=53.86 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=34.4
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001574 309 DVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASM 353 (1051)
Q Consensus 309 DvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ 353 (1051)
-|+|.||| - |.-+..|+-|+++..+-.+...+||++||...
T Consensus 3 PVlv~ayN---R-p~~l~r~LesLl~~~p~~~~~~liIs~DG~~~ 43 (334)
T cd02514 3 PVLVIACN---R-PDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE 43 (334)
T ss_pred CEEEEecC---C-HHHHHHHHHHHHhccccCCCceEEEEeCCCch
Confidence 37788886 4 68999999999998755567889999999876
No 79
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=90.97 E-value=2.9 Score=53.22 Aligned_cols=103 Identities=23% Similarity=0.314 Sum_probs=69.4
Q ss_pred hhhhhcCCcHHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEE
Q 001574 689 NFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVY 768 (1051)
Q Consensus 689 ~~~~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY 768 (1051)
..+-+||.-.+|-+--...-||++. |... =.++||+..|+....||-++.+
T Consensus 379 ~~rlHYGHPD~~n~~f~~TRGGvSK----------Ask~-------------------lhLsEDIfaG~n~~lRGG~i~h 429 (817)
T PF02364_consen 379 LVRLHYGHPDVFNRIFMTTRGGVSK----------ASKG-------------------LHLSEDIFAGMNATLRGGRIKH 429 (817)
T ss_pred hhhccCCCchhhhhhheeccCccch----------Hhhc-------------------ccccHHHHHHHHHHhcCCceee
Confidence 3566788888887766778899764 2221 2799999999999999999999
Q ss_pred ecCCCCcccccCCC-CHHHHHHHhhhhhccchhhhhhccCccccccCCCCCcccchhhh
Q 001574 769 CVPKRPAFKGSAPI-NLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYT 826 (1051)
Q Consensus 769 ~~p~~~af~G~aP~-tl~~~l~QR~RWa~G~iQil~sk~~Pl~~g~~~~Lt~~QRL~Yl 826 (1051)
+ +-.. .|..-+ .+..-+.=-..-+.|+-+..++|.--. ...+|.+.+-+++.
T Consensus 430 ~-ey~q--cGKGRD~Gf~~I~~F~~KI~~G~GEQ~LSRe~yr---Lg~~ld~~R~LSfy 482 (817)
T PF02364_consen 430 C-EYIQ--CGKGRDVGFNSILNFETKIASGMGEQMLSREYYR---LGTRLDFFRFLSFY 482 (817)
T ss_pred h-hhhh--cccccccCchhhhhhHhHhcCCccchhhhHHHHH---hhccCCHHHHHHHH
Confidence 9 4444 354432 333344444667889988888874222 25677776666543
No 80
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.02 E-value=0.24 Score=49.78 Aligned_cols=51 Identities=29% Similarity=0.776 Sum_probs=39.3
Q ss_pred CcccccCCcccccCCCCeeecccCC-CCcccchhhhhhhh--cCCCCCCCCccccccc
Q 001574 38 KLCRVCGDEIGLKENGELFVACHEC-GFPVCRPCYEYERS--EGSQCCPGCNTRYKRH 92 (1051)
Q Consensus 38 ~~C~iCgd~vg~~~~G~~fvaC~eC-~FpVCR~Cyeyerk--eG~~~CPqCkt~Ykr~ 92 (1051)
--|.||.|. ..-|-|.-=+|| ||.||-.||--=.| .-.-+||-|||-||..
T Consensus 81 YeCnIC~et----S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 81 YECNICKET----SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred eeccCcccc----cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 369999875 234557776665 99999999965555 5568999999999965
No 81
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=87.47 E-value=0.5 Score=36.74 Aligned_cols=44 Identities=34% Similarity=0.745 Sum_probs=32.6
Q ss_pred cccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCccc
Q 001574 39 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTR 88 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~ 88 (1051)
.|.||.+.. .+.+. ...|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~~-~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPVV-LLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCceE-ecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998886 22222 224899999999976666678899999975
No 82
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=81.14 E-value=1.5 Score=37.66 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=33.7
Q ss_pred cccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCccccc
Q 001574 39 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYK 90 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Yk 90 (1051)
+|.||++-+ .+ +.+ -.||+-.||.|.+--.++ ++.||.|+.++.
T Consensus 3 ~Cpi~~~~~-~~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVM-KD----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcC-CC----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC
Confidence 699999863 33 333 268999999999776666 678999998874
No 83
>PHA02929 N1R/p28-like protein; Provisional
Probab=74.50 E-value=3.2 Score=45.98 Aligned_cols=55 Identities=25% Similarity=0.549 Sum_probs=39.7
Q ss_pred cCCCcccccCCcccccCC-CCeeecccCCCCcccchhhhhhhhcCCCCCCCCccccc
Q 001574 35 SGSKLCRVCGDEIGLKEN-GELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYK 90 (1051)
Q Consensus 35 ~~~~~C~iCgd~vg~~~~-G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Yk 90 (1051)
.....|.||.+.+..++- ...+..-..|+=.-|+.|..- -.+.++.||-|++++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~-Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDI-WKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHH-HHhcCCCCCCCCCEee
Confidence 456799999998765431 122333347899999999954 4456789999999875
No 84
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=73.17 E-value=2.8 Score=48.08 Aligned_cols=52 Identities=33% Similarity=0.902 Sum_probs=43.5
Q ss_pred CCcccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCccccccc
Q 001574 37 SKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 92 (1051)
Q Consensus 37 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 92 (1051)
...|.+|++.. +.+-..|+|| -|+|-+|-+|.-- .-++++.||.|.++|.+.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~~t-~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCHKT-ISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhhhc-ccccCCCCCccCCccccC
Confidence 36899999985 4555679999 9999999999944 468999999999999764
No 85
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=73.01 E-value=1.8 Score=49.07 Aligned_cols=44 Identities=36% Similarity=0.881 Sum_probs=36.8
Q ss_pred cCCCCeeecccCCCCcc--------cc--hhhhhhhhcCCCCCCCCcccccccc
Q 001574 50 KENGELFVACHECGFPV--------CR--PCYEYERSEGSQCCPGCNTRYKRHK 93 (1051)
Q Consensus 50 ~~~G~~fvaC~eC~FpV--------CR--~CyeyerkeG~~~CPqCkt~Ykr~k 93 (1051)
..+|+..--|.-|+||| |+ .|||.+|.+-.+.||.|-.|-.|.+
T Consensus 84 k~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 84 KQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIE 137 (389)
T ss_pred cccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHH
Confidence 34566677799999998 54 6999999999999999999998874
No 86
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=71.61 E-value=3.8 Score=44.06 Aligned_cols=63 Identities=22% Similarity=0.554 Sum_probs=40.1
Q ss_pred eecCcCCCCCCCccCCCcccccCCcccccCCCCeeecccCCCCcccchhhhhhh---------------hcCCCCCCCCc
Q 001574 22 MHANEEQRPPTRQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYER---------------SEGSQCCPGCN 86 (1051)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyeyer---------------keG~~~CPqCk 86 (1051)
|..|++..+-+...+.-.|.||-|.+- ++.+ -.|+--.|++|.+.-. +.+...||-|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR 75 (193)
T PLN03208 3 IEKDEDDTTLVDSGGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCK 75 (193)
T ss_pred cccccccceeccCCCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCC
Confidence 333333333344445569999998752 2333 2689999999996321 11346899999
Q ss_pred ccccc
Q 001574 87 TRYKR 91 (1051)
Q Consensus 87 t~Ykr 91 (1051)
++...
T Consensus 76 ~~Is~ 80 (193)
T PLN03208 76 SDVSE 80 (193)
T ss_pred CcCCh
Confidence 99864
No 87
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=70.64 E-value=2.2 Score=37.03 Aligned_cols=47 Identities=30% Similarity=0.692 Sum_probs=34.2
Q ss_pred CCCcccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCccccccc
Q 001574 36 GSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 92 (1051)
Q Consensus 36 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 92 (1051)
..|.|=.|+..-.. ..+.+ |+=-||+-|+.-||-.| ||=|++|+...
T Consensus 6 ~~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 34566667765222 13444 59999999999999887 99999999654
No 88
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=70.16 E-value=2.5 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.642 Sum_probs=17.4
Q ss_pred cchhhhhhhhcCCCCCCCCccccc
Q 001574 67 CRPCYEYERSEGSQCCPGCNTRYK 90 (1051)
Q Consensus 67 CR~CyeyerkeG~~~CPqCkt~Yk 90 (1051)
|.-|- .+...|..-||+|+++-.
T Consensus 30 Cp~CG-~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 30 CPQCG-TEVPVDEAHCPNCGAETG 52 (645)
T ss_pred CCCCC-CCCCcccccccccCCccc
Confidence 55554 446788899999999875
No 89
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=70.07 E-value=30 Score=37.49 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=35.2
Q ss_pred cEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcC
Q 001574 474 RLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMD 535 (1051)
Q Consensus 474 ~lvYvsRekrpg~~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~~D 535 (1051)
++.-..|.+.-|..- |--+.+. ...|+|+++.|||-- -.|+++-+.+-..-|
T Consensus 64 ~i~l~pR~~klGLgt-----Ay~hgl~----~a~g~fiviMDaDls-HhPk~ipe~i~lq~~ 115 (238)
T KOG2978|consen 64 NILLKPRTKKLGLGT-----AYIHGLK----HATGDFIVIMDADLS-HHPKFIPEFIRLQKE 115 (238)
T ss_pred cEEEEeccCcccchH-----HHHhhhh----hccCCeEEEEeCccC-CCchhHHHHHHHhhc
Confidence 567777776443221 2223444 378999999999985 789999887765544
No 90
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=67.18 E-value=3.5 Score=33.32 Aligned_cols=43 Identities=30% Similarity=0.635 Sum_probs=32.4
Q ss_pred cccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCc
Q 001574 39 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCN 86 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCk 86 (1051)
.|.||-+++.. ++..+... |+=-.|+.|.+--.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999755 66777774 9999999999544333 57999995
No 91
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=65.80 E-value=3.7 Score=34.07 Aligned_cols=26 Identities=38% Similarity=0.976 Sum_probs=20.7
Q ss_pred cccccCCcccccCCCCeeecccCCCCcc
Q 001574 39 LCRVCGDEIGLKENGELFVACHECGFPV 66 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC~FpV 66 (1051)
+|.-||.++..+.. .-+-|.+|++.|
T Consensus 4 ~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 4 ICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred ECCCCCCEeecCCC--CceECCCCCceE
Confidence 79999999888733 348899999876
No 92
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=65.63 E-value=1.5 Score=43.19 Aligned_cols=48 Identities=31% Similarity=0.773 Sum_probs=35.3
Q ss_pred cCCCcccccCCcccccC-CCCeeecccCCCCcccchhhhhhhhcCCCCCCCC
Q 001574 35 SGSKLCRVCGDEIGLKE-NGELFVACHECGFPVCRPCYEYERSEGSQCCPGC 85 (1051)
Q Consensus 35 ~~~~~C~iCgd~vg~~~-~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqC 85 (1051)
.+...|..|+...|+-. .| ..|..|...||+.|-.|-.+++.=.|-=|
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred cCCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 46679999999987763 35 89999999999999988555555556544
No 93
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=64.81 E-value=4.8 Score=31.34 Aligned_cols=26 Identities=42% Similarity=1.076 Sum_probs=18.6
Q ss_pred cccccCCcccccCCCCeeecccCCCCcc
Q 001574 39 LCRVCGDEIGLKENGELFVACHECGFPV 66 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC~FpV 66 (1051)
+|.-||.++.+.. ++ -+-|.+|++.|
T Consensus 2 ~C~~Cg~~~~~~~-~~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKP-GD-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BST-SS-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCC-CC-cEECCcCCCeE
Confidence 6889999998654 33 37999999876
No 94
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=64.57 E-value=5 Score=41.87 Aligned_cols=51 Identities=27% Similarity=0.535 Sum_probs=34.6
Q ss_pred CCCcccccCCcccccCCCCeeecccCCCC---cccchhhhhh-hhcCCCCCCCCccccccc
Q 001574 36 GSKLCRVCGDEIGLKENGELFVACHECGF---PVCRPCYEYE-RSEGSQCCPGCNTRYKRH 92 (1051)
Q Consensus 36 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~F---pVCR~Cyeye-rkeG~~~CPqCkt~Ykr~ 92 (1051)
.+..|.||-++ +++..-|| .|.= -|=+.|.+.= ...++..|++|+++|.-.
T Consensus 7 ~~~~CRIC~~~-----~~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDE-----YDVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCC-----CCCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 45599999766 22344688 6632 3456787544 345789999999999744
No 95
>PHA02862 5L protein; Provisional
Probab=63.90 E-value=4.3 Score=41.70 Aligned_cols=49 Identities=27% Similarity=0.492 Sum_probs=32.4
Q ss_pred CCcccccCCcccccCCCCeeecccCC---CCcccchhhhhh-hhcCCCCCCCCcccccc
Q 001574 37 SKLCRVCGDEIGLKENGELFVACHEC---GFPVCRPCYEYE-RSEGSQCCPGCNTRYKR 91 (1051)
Q Consensus 37 ~~~C~iCgd~vg~~~~G~~fvaC~eC---~FpVCR~Cyeye-rkeG~~~CPqCkt~Ykr 91 (1051)
+.+|.||-++ ++|..-|| .| -==|=+.|.+-= ...++..|++||++|.-
T Consensus 2 ~diCWIC~~~-----~~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDV-----CDERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCc-----CCCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4689999876 23446788 44 112335665322 45788999999999963
No 96
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=63.66 E-value=5.6 Score=45.33 Aligned_cols=40 Identities=38% Similarity=0.821 Sum_probs=31.3
Q ss_pred CCccCCCcccc--cCCcccccCCCCeeecccC-CCCcccchhhh
Q 001574 32 TRQSGSKLCRV--CGDEIGLKENGELFVACHE-CGFPVCRPCYE 72 (1051)
Q Consensus 32 ~~~~~~~~C~i--Cgd~vg~~~~G~~fvaC~e-C~FpVCR~Cye 72 (1051)
+.+++|-.|.- ||..+-...| .--|.|.. |+|--||.|.|
T Consensus 310 vlq~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e 352 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKE 352 (446)
T ss_pred eeecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHh
Confidence 56778889986 9988666543 23578877 99999999998
No 97
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.31 E-value=3.1 Score=46.47 Aligned_cols=58 Identities=26% Similarity=0.613 Sum_probs=35.9
Q ss_pred CCCCccCCCcccccCCcccccCCCCeeecccCCCC-cccchhh-hhhhh-----cCCCCCCCCccccc
Q 001574 30 PPTRQSGSKLCRVCGDEIGLKENGELFVACHECGF-PVCRPCY-EYERS-----EGSQCCPGCNTRYK 90 (1051)
Q Consensus 30 ~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~F-pVCR~Cy-eyerk-----eG~~~CPqCkt~Yk 90 (1051)
-|.|+++.++|.+||..+-+++|-|-.+ |=-+ -+|---+ |+..| ---|-||=||++-+
T Consensus 217 lPtkhl~d~vCaVCg~~~~~s~~eegvi---enty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 217 LPTKHLSDSVCAVCGQQIDVSVDEEGVI---ENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCCCCCcchhHhhcchheeecchhhhh---hhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 5789999999999999977776443222 1111 1222222 33333 23489999999863
No 98
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=62.17 E-value=2.3 Score=38.01 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=21.8
Q ss_pred chhhhhhhhcCCCCCCCCccccccc
Q 001574 68 RPCYEYERSEGSQCCPGCNTRYKRH 92 (1051)
Q Consensus 68 R~CyeyerkeG~~~CPqCkt~Ykr~ 92 (1051)
+-|+|++..||.=+||.|+..|--.
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~ 66 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIR 66 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEE
T ss_pred hhhhcccccCCEEEcCCCCCEEeCC
Confidence 5688899999999999999999644
No 99
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=61.21 E-value=6 Score=44.78 Aligned_cols=53 Identities=26% Similarity=0.630 Sum_probs=44.0
Q ss_pred CcccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCccccccc
Q 001574 38 KLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 92 (1051)
Q Consensus 38 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 92 (1051)
+-|.+|--++-++.+ ++.--|+|+.+.|-.|..---.-|...||.|.+....-
T Consensus 1 ~~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCCcccccceecCcc--ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 358889888888755 66666799999999999777778999999999998753
No 100
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=60.42 E-value=1.2e+02 Score=34.81 Aligned_cols=41 Identities=20% Similarity=0.139 Sum_probs=29.7
Q ss_pred CccchhhHHHHhhccCCCCCEEEEecCCCC--CChHHHHHHHhhhhc
Q 001574 490 KKAGAMNALVRVSAVLTNAPFILNLDCDHY--LNNSKAVREAMCFLM 534 (1051)
Q Consensus 490 ~KAGalNallrvSa~~tngp~il~lDcD~~--~~~~~~Lr~amcf~~ 534 (1051)
.|-||..-.+- .+-|.+|+..|||-- +++=+.|.++|.=..
T Consensus 144 gKGgAvR~g~l----~~rG~~ilfadAdGaTkf~d~ekLe~al~~~~ 186 (323)
T KOG2977|consen 144 GKGGAVRKGML----SSRGQKILFADADGATKFADLEKLEKALNDKA 186 (323)
T ss_pred CCCcceehhhH----hccCceEEEEcCCCCccCCCHHHHHHHHHhhc
Confidence 47777664433 368999999999974 467788888886443
No 101
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=59.46 E-value=8.4 Score=28.56 Aligned_cols=39 Identities=33% Similarity=0.822 Sum_probs=26.9
Q ss_pred ccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCC
Q 001574 40 CRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGC 85 (1051)
Q Consensus 40 C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqC 85 (1051)
|.||.+. . ....+ -.|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~----~-~~~~~--~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE----L-KDPVV--LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC----C-CCcEE--ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7788777 1 12211 15788899999976655677889987
No 102
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=54.31 E-value=7.3 Score=33.30 Aligned_cols=28 Identities=32% Similarity=0.977 Sum_probs=18.2
Q ss_pred cccccCCcccccCCCCeeecccCCCCcccchhhh
Q 001574 39 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYE 72 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~Cye 72 (1051)
.|.|||+++|+..+ +.= +=+| ||.+|++
T Consensus 1 ~C~iCg~kigl~~~----~k~-~DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR----FKI-KDGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc----eec-cCcc-chHHHHH
Confidence 59999999998643 111 1123 7788874
No 103
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=53.38 E-value=12 Score=29.59 Aligned_cols=39 Identities=33% Similarity=0.798 Sum_probs=27.5
Q ss_pred ccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCC
Q 001574 40 CRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGC 85 (1051)
Q Consensus 40 C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqC 85 (1051)
|.||-|.... +++.- .||--.|+.|.+.-.+. +..||.|
T Consensus 1 C~iC~~~~~~-----~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----PVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----EEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC-----cCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 7788665322 44443 78999999999776666 6899987
No 104
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=53.11 E-value=12 Score=31.04 Aligned_cols=46 Identities=22% Similarity=0.547 Sum_probs=32.5
Q ss_pred CcccccCCcccccCCCCeeecccCCCCc-ccchhhhhhhhcCCCCCCCCcccccc
Q 001574 38 KLCRVCGDEIGLKENGELFVACHECGFP-VCRPCYEYERSEGSQCCPGCNTRYKR 91 (1051)
Q Consensus 38 ~~C~iCgd~vg~~~~G~~fvaC~eC~Fp-VCR~CyeyerkeG~~~CPqCkt~Ykr 91 (1051)
..|.||.++.-. -.+.+ |+=- +|..|++--.+ ....||-|+++.++
T Consensus 3 ~~C~iC~~~~~~----~~~~p---CgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRD----VVLLP---CGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSS----EEEET---TCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCCccCCccCCc----eEEeC---CCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 369999997321 23444 5777 99999966666 77999999998864
No 105
>PRK00420 hypothetical protein; Validated
Probab=52.27 E-value=6.8 Score=38.79 Aligned_cols=29 Identities=28% Similarity=0.663 Sum_probs=21.9
Q ss_pred ecccCCCCcccchhhhhhhhcCCCCCCCCcccccc
Q 001574 57 VACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKR 91 (1051)
Q Consensus 57 vaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr 91 (1051)
-.|..|++|.=| -++|.-.||.|++.+.-
T Consensus 24 ~~CP~Cg~pLf~------lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLFE------LKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCccee------cCCCceECCCCCCeeee
Confidence 457777777632 37888999999999864
No 106
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=51.66 E-value=11 Score=29.71 Aligned_cols=40 Identities=30% Similarity=0.670 Sum_probs=29.4
Q ss_pred ccccCCcccccCCCCeeecccCCCCcccchhhhhhhh-cCCCCCCCC
Q 001574 40 CRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERS-EGSQCCPGC 85 (1051)
Q Consensus 40 C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyeyerk-eG~~~CPqC 85 (1051)
|.||.+...... --.+|+=..|+.|..--.+ .+...||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 778888744322 2346799999999966655 788889988
No 107
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=50.07 E-value=16 Score=30.04 Aligned_cols=38 Identities=29% Similarity=0.822 Sum_probs=28.6
Q ss_pred CCCcccccCCcccccCCCCeeecccCC-CCcccchhhhhhhhcC
Q 001574 36 GSKLCRVCGDEIGLKENGELFVACHEC-GFPVCRPCYEYERSEG 78 (1051)
Q Consensus 36 ~~~~C~iCgd~vg~~~~G~~fvaC~eC-~FpVCR~CyeyerkeG 78 (1051)
....|..|+..+ .|.-+ -|.+| .|-+|..||...+..+
T Consensus 3 ~~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~~ 41 (44)
T smart00291 3 HSYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAGG 41 (44)
T ss_pred CCcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcCC
Confidence 345799999853 36666 79999 9999999997554443
No 108
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.74 E-value=14 Score=40.67 Aligned_cols=50 Identities=30% Similarity=0.683 Sum_probs=39.2
Q ss_pred cCCCcccccCCcccccCCCCeeecccCCCCcccchhhhhh---hhcCCCCCCCCccccccc
Q 001574 35 SGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYE---RSEGSQCCPGCNTRYKRH 92 (1051)
Q Consensus 35 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyeye---rkeG~~~CPqCkt~Ykr~ 92 (1051)
.+---|.||=|.. =|+.|-| ||---|.||. |- .....++||=||..-..-
T Consensus 45 ~~~FdCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 45 GGFFDCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCceeeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCccccccccc
Confidence 3344899997764 3478888 9999999998 65 668889999999887543
No 109
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=49.11 E-value=13 Score=44.47 Aligned_cols=31 Identities=19% Similarity=0.492 Sum_probs=22.6
Q ss_pred CeeecccCCCCcccchhhhhhhhcCCCCCCCCcccccccc
Q 001574 54 ELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRHK 93 (1051)
Q Consensus 54 ~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~k 93 (1051)
+..++||+|+..+ ..+...||+|++...|++
T Consensus 219 ~~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~~ 249 (419)
T PRK15103 219 QGLRSCSCCTAIL---------PADQPVCPRCHTKGYVRR 249 (419)
T ss_pred cCCCcCCCCCCCC---------CCCCCCCCCCCCcCcCCC
Confidence 3467899999864 234458999999986653
No 110
>PRK12495 hypothetical protein; Provisional
Probab=48.89 E-value=10 Score=41.44 Aligned_cols=29 Identities=34% Similarity=0.905 Sum_probs=21.2
Q ss_pred eecccCCCCcccchhhhhhhhcCCCCCCCCcccccc
Q 001574 56 FVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKR 91 (1051)
Q Consensus 56 fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr 91 (1051)
-.-|.+|+.||= +..|...||-|.+.+.+
T Consensus 42 a~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 42 NAHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred hhhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 344666666664 34899999999999975
No 111
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=47.90 E-value=6.2 Score=44.96 Aligned_cols=36 Identities=31% Similarity=0.814 Sum_probs=27.3
Q ss_pred cccccCCcccccCCCCeeecccCC-CCcccchhhhhhhhcC
Q 001574 39 LCRVCGDEIGLKENGELFVACHEC-GFPVCRPCYEYERSEG 78 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC-~FpVCR~CyeyerkeG 78 (1051)
-|.+|--++- .-.|+-|+|| +|-.|-||+.--...|
T Consensus 7 hCdvC~~d~T----~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDMT----DLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhhh----cceeeeeecccccceehhhhhcccccc
Confidence 5888876643 4489999999 9999999995443333
No 112
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=47.85 E-value=99 Score=33.50 Aligned_cols=60 Identities=13% Similarity=0.290 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCCCCCcc--hHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcc
Q 001574 953 PTTLIILNMVGVVAGVSDAINNGYGSWGP--LFGKLFFAFWVIVHLYPFLKGLMG-RQNRTPT 1012 (1051)
Q Consensus 953 ~~tLlllnlvaiv~Gi~r~i~~~~~~~~~--l~g~l~~~~Wvlvnl~Pflkgl~g-R~~r~P~ 1012 (1051)
=..|+++.+++++.|+.-.++......|- ++...+..+++++.+|-|+--+.| +..|.++
T Consensus 99 DssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~ 161 (226)
T COG4858 99 DSSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGT 161 (226)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCch
Confidence 34578888899999998888655433332 334566778888888888776666 3346676
No 113
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=46.44 E-value=15 Score=46.36 Aligned_cols=55 Identities=31% Similarity=0.744 Sum_probs=40.2
Q ss_pred CCCcccccCCcccccCCCC---eeecccCC--------------------CCcccchhh-hhh----hh--cCCCCCCCC
Q 001574 36 GSKLCRVCGDEIGLKENGE---LFVACHEC--------------------GFPVCRPCY-EYE----RS--EGSQCCPGC 85 (1051)
Q Consensus 36 ~~~~C~iCgd~vg~~~~G~---~fvaC~eC--------------------~FpVCR~Cy-eye----rk--eG~~~CPqC 85 (1051)
.-.+|.-|=.++.--.+=. +|..|..| .||.|-.|- ||+ |+ --.-+||.|
T Consensus 100 D~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~C 179 (750)
T COG0068 100 DAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKC 179 (750)
T ss_pred chhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCccc
Confidence 4458999998865443333 69999999 499999998 565 44 233699999
Q ss_pred ccccc
Q 001574 86 NTRYK 90 (1051)
Q Consensus 86 kt~Yk 90 (1051)
+-.|.
T Consensus 180 GP~~~ 184 (750)
T COG0068 180 GPHLF 184 (750)
T ss_pred CCCeE
Confidence 97554
No 115
>PHA02926 zinc finger-like protein; Provisional
Probab=45.62 E-value=21 Score=39.41 Aligned_cols=62 Identities=27% Similarity=0.513 Sum_probs=43.1
Q ss_pred ccCCCcccccCCccccc--CCCCeeecccCCCCcccchhhhhhhhc-----CCCCCCCCccccccccCc
Q 001574 34 QSGSKLCRVCGDEIGLK--ENGELFVACHECGFPVCRPCYEYERSE-----GSQCCPGCNTRYKRHKGC 95 (1051)
Q Consensus 34 ~~~~~~C~iCgd~vg~~--~~G~~fvaC~eC~FpVCR~Cyeyerke-----G~~~CPqCkt~Ykr~kgs 95 (1051)
.+....|.||=+.+... ++..-|.-=..|+=.-|..|..--++. +...||.|+++++...=|
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 34557999999998554 222234444468899999999766553 346799999999865433
No 116
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=45.48 E-value=1e+02 Score=36.84 Aligned_cols=47 Identities=19% Similarity=0.073 Sum_probs=35.8
Q ss_pred CCCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCC
Q 001574 301 EPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDG 350 (1051)
Q Consensus 301 ~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG 350 (1051)
.|.+||.+.|+|--.| |-=..++.||-|++.-.=|.=--.|.+.||=
T Consensus 150 Ype~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDDf 196 (603)
T KOG3737|consen 150 YPENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDDF 196 (603)
T ss_pred CcccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEeccC
Confidence 4679999999999998 9999999999999875433212235666663
No 117
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=45.10 E-value=14 Score=44.09 Aligned_cols=30 Identities=20% Similarity=0.525 Sum_probs=20.9
Q ss_pred eeecccCCCCcccchhhhhhhhcCCCCCCCCccccccc
Q 001574 55 LFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 92 (1051)
Q Consensus 55 ~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 92 (1051)
..++|++|+..+ . ......||+|++..-|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 367899999865 1 13346799999987544
No 118
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=43.69 E-value=10 Score=43.77 Aligned_cols=29 Identities=31% Similarity=0.962 Sum_probs=24.4
Q ss_pred CCcccchhhhhhhhcCC--CCCCCCcccccc
Q 001574 63 GFPVCRPCYEYERSEGS--QCCPGCNTRYKR 91 (1051)
Q Consensus 63 ~FpVCR~CyeyerkeG~--~~CPqCkt~Ykr 91 (1051)
+|.|||.|+---+-+-+ +-||-|.++||.
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e 31 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKE 31 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccch
Confidence 57899999976666666 899999999974
No 119
>PRK04023 DNA polymerase II large subunit; Validated
Probab=43.35 E-value=17 Score=47.42 Aligned_cols=47 Identities=26% Similarity=0.638 Sum_probs=33.0
Q ss_pred cCCCcccccCCcccccCCCCeeecccCCCC-----cccchhhhhhhhcCCCCCCCCcccccc
Q 001574 35 SGSKLCRVCGDEIGLKENGELFVACHECGF-----PVCRPCYEYERSEGSQCCPGCNTRYKR 91 (1051)
Q Consensus 35 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~F-----pVCR~CyeyerkeG~~~CPqCkt~Ykr 91 (1051)
.+...|.-||... ....|.+|+= ..|..| ....+.-.||.|+..-..
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C---G~~~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC---GIEVEEDECEKCGREPTP 675 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc---cCcCCCCcCCCCCCCCCc
Confidence 4456999999883 4568999984 367777 222334679999987653
No 120
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=41.98 E-value=11 Score=37.24 Aligned_cols=26 Identities=23% Similarity=0.567 Sum_probs=17.4
Q ss_pred ecccCCCCcccchhhhhhhhcCCCCCCCCcccc
Q 001574 57 VACHECGFPVCRPCYEYERSEGSQCCPGCNTRY 89 (1051)
Q Consensus 57 vaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Y 89 (1051)
+-|+.|+ ++++..+-.-.||+|+.+=
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 71 AWCWDCS-------QVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred EEcccCC-------CEEecCCcCccCcCCCCCC
Confidence 4566666 4566655556799999763
No 121
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=41.06 E-value=20 Score=31.67 Aligned_cols=33 Identities=30% Similarity=0.753 Sum_probs=24.0
Q ss_pred CCCcccccCCcccccCCCCeeecccCCCCcccch
Q 001574 36 GSKLCRVCGDEIGLKENGELFVACHECGFPVCRP 69 (1051)
Q Consensus 36 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~ 69 (1051)
.+|.|..||.....+.++.. .-|..|++-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~-~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRV-FTCPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccce-EEcCCCCCEECcH
Confidence 57899999999877545554 4577788876554
No 122
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=40.52 E-value=17 Score=29.96 Aligned_cols=27 Identities=41% Similarity=0.918 Sum_probs=15.1
Q ss_pred cccccCCcccccCCCCeeecccCCCCcc
Q 001574 39 LCRVCGDEIGLKENGELFVACHECGFPV 66 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC~FpV 66 (1051)
.|+-||..+..+++.. -+-|..|+.++
T Consensus 5 ~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 5667777666655443 34555555544
No 123
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=39.78 E-value=34 Score=37.15 Aligned_cols=49 Identities=18% Similarity=0.337 Sum_probs=38.4
Q ss_pred CCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhh-cCCCCCCcEEEE
Q 001574 489 HKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGKKLCYV 545 (1051)
Q Consensus 489 h~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amcf~-~Dp~~g~~vafV 545 (1051)
.--|-+.|++++ .+.++|++.+.=|-.+.+++++.+.+-.| .|| ++|.|
T Consensus 40 ~s~~~~yN~a~~----~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~----~~G~i 89 (217)
T PF13712_consen 40 KSMAAAYNEAME----KAKAKYLVFLHQDVFIINENWLEDILEIFEEDP----NIGMI 89 (217)
T ss_dssp S-TTTHHHHHGG----G--SSEEEEEETTEE-SSHHHHHHHHHHHHH-T----TEEEE
T ss_pred cCHHHHHHHHHH----hCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCC----CccEE
Confidence 456788999998 48999999999999999999999999999 898 66554
No 124
>PRK07220 DNA topoisomerase I; Validated
Probab=39.71 E-value=18 Score=46.43 Aligned_cols=48 Identities=23% Similarity=0.695 Sum_probs=32.4
Q ss_pred CcccccCCccccc--CCCCeeecccCCCCcccchhhhhhhh----cCCCCCCCCcc
Q 001574 38 KLCRVCGDEIGLK--ENGELFVACHECGFPVCRPCYEYERS----EGSQCCPGCNT 87 (1051)
Q Consensus 38 ~~C~iCgd~vg~~--~~G~~fvaC~eC~FpVCR~Cyeyerk----eG~~~CPqCkt 87 (1051)
..|..||.++... ..|..|..|. +||-|+--+-..++ .-+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 4899999875542 3466799995 57888755543321 12478999985
No 125
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=39.53 E-value=20 Score=31.79 Aligned_cols=31 Identities=32% Similarity=0.715 Sum_probs=24.8
Q ss_pred cCCCcccccCCc---ccccCCCCeeecccCCCCc
Q 001574 35 SGSKLCRVCGDE---IGLKENGELFVACHECGFP 65 (1051)
Q Consensus 35 ~~~~~C~iCgd~---vg~~~~G~~fvaC~eC~Fp 65 (1051)
..|-+|.-|+.- ++..+||...+-|-+|+|.
T Consensus 7 IAGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 7 IAGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred eccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 356689999854 5566899999999999985
No 126
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=39.50 E-value=5e+02 Score=30.60 Aligned_cols=19 Identities=21% Similarity=0.583 Sum_probs=14.2
Q ss_pred eecCcccccccccchhHHH
Q 001574 883 RWSGVSIEDWWRNEQFWVI 901 (1051)
Q Consensus 883 ~wsG~sl~~wWr~e~~W~I 901 (1051)
+-.|-.++.||..+-|+-+
T Consensus 173 ~~NGS~Ik~WW~~HHy~s~ 191 (330)
T PF07851_consen 173 IVNGSRIKGWWVFHHYIST 191 (330)
T ss_pred ccCCCcchHHHHHHHHHHH
Confidence 3458888999988887743
No 127
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=38.66 E-value=21 Score=38.71 Aligned_cols=30 Identities=43% Similarity=0.916 Sum_probs=21.6
Q ss_pred CccCCCcccccCCccccc----CCCCeeecccCCCCcccchhhh
Q 001574 33 RQSGSKLCRVCGDEIGLK----ENGELFVACHECGFPVCRPCYE 72 (1051)
Q Consensus 33 ~~~~~~~C~iCgd~vg~~----~~G~~fvaC~eC~FpVCR~Cye 72 (1051)
+-...-+|..||+-++-. .||+ |||++||+
T Consensus 168 ~~~~~v~C~kCGE~~~e~~~~~~ng~----------~vC~~C~~ 201 (206)
T COG2191 168 KKFGSVRCSKCGELFMEPRAVVLNGK----------PVCKPCAE 201 (206)
T ss_pred cccceeeccccCcccccchhhhcCCc----------eecccccc
Confidence 333446999999987654 3666 68999995
No 128
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=38.32 E-value=25 Score=29.57 Aligned_cols=32 Identities=31% Similarity=0.953 Sum_probs=26.0
Q ss_pred cccccCCcccccCCCCeeecccCC-CCcccchhhhhh
Q 001574 39 LCRVCGDEIGLKENGELFVACHEC-GFPVCRPCYEYE 74 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC-~FpVCR~Cyeye 74 (1051)
.|..|+.++. +...+.|.+| .|-+|-+||..-
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~~g 34 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFSAG 34 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhhCc
Confidence 5888987643 4488999999 999999999643
No 129
>PRK11827 hypothetical protein; Provisional
Probab=38.16 E-value=21 Score=31.68 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=18.3
Q ss_pred cccchhhhhhhhcCCCCCCCCccccccccCcc
Q 001574 65 PVCRPCYEYERSEGSQCCPGCNTRYKRHKGCA 96 (1051)
Q Consensus 65 pVCR~CyeyerkeG~~~CPqCkt~Ykr~kgsp 96 (1051)
|+|+-=.+|...+..=+|..|+-.|--..|=|
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laYPI~dgIP 43 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAFPLRDGIP 43 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeeccccCCcc
Confidence 44444444443333467888888887655555
No 130
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=38.13 E-value=15 Score=28.51 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=13.5
Q ss_pred hhhhhcCCCCCCCCcccccc
Q 001574 72 EYERSEGSQCCPGCNTRYKR 91 (1051)
Q Consensus 72 eyerkeG~~~CPqCkt~Ykr 91 (1051)
.|+-++....||.|+.+-..
T Consensus 10 ~y~~~~~~~~CP~Cg~~~~~ 29 (33)
T cd00350 10 IYDGEEAPWVCPVCGAPKDK 29 (33)
T ss_pred EECCCcCCCcCcCCCCcHHH
Confidence 44444467899999886543
No 131
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.90 E-value=20 Score=40.51 Aligned_cols=22 Identities=32% Similarity=0.966 Sum_probs=17.9
Q ss_pred ccCCCcccccCCcccccCCCCeeecccCCC
Q 001574 34 QSGSKLCRVCGDEIGLKENGELFVACHECG 63 (1051)
Q Consensus 34 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~ 63 (1051)
..++..|.-||+- -|++|-.|+
T Consensus 226 ~~~~~~C~~CGg~--------rFlpC~~C~ 247 (281)
T KOG2824|consen 226 CEGGGVCESCGGA--------RFLPCSNCH 247 (281)
T ss_pred CCCCCcCCCcCCc--------ceEecCCCC
Confidence 5667899999964 799998884
No 132
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=37.69 E-value=32 Score=30.24 Aligned_cols=47 Identities=28% Similarity=0.740 Sum_probs=34.4
Q ss_pred cccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCcccccc
Q 001574 39 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKR 91 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr 91 (1051)
-|..|+.++-.+. .+-++-=.||-| |.+|-|... +++||-|+-.+-+
T Consensus 7 nCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcccc
Confidence 6999999966543 244555578887 999996554 4799999976643
No 133
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=37.02 E-value=17 Score=43.20 Aligned_cols=50 Identities=24% Similarity=0.626 Sum_probs=35.6
Q ss_pred CCcccccCCcccccCCCCeeecccCCC-CcccchhhhhhhhcCCCCCCCCcccccccc
Q 001574 37 SKLCRVCGDEIGLKENGELFVACHECG-FPVCRPCYEYERSEGSQCCPGCNTRYKRHK 93 (1051)
Q Consensus 37 ~~~C~iCgd~vg~~~~G~~fvaC~eC~-FpVCR~CyeyerkeG~~~CPqCkt~Ykr~k 93 (1051)
...|-.|..+|. |-.+|-|.||. |-+|-+|+.--..-|.+ ||.-+|.-.+
T Consensus 14 ky~C~~C~~dit----~~i~ikCaeCp~fdLCl~CFs~GaE~~~H---~~~H~Yrim~ 64 (438)
T KOG0457|consen 14 KYNCDYCSLDIT----GLIRIKCAECPDFDLCLQCFSVGAETGKH---QNDHPYRIMD 64 (438)
T ss_pred CCCCccHhHHhc----cceEEEeecCCCcchhHHHHhcccccCCC---CCCCCceeec
Confidence 348999998854 66899999998 99999999544333433 3445665443
No 134
>COG4818 Predicted membrane protein [Function unknown]
Probab=36.61 E-value=3.3e+02 Score=26.66 Aligned_cols=88 Identities=23% Similarity=0.349 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCeeeCcCCCCcccccceeeeccccchHHHHHHHHHHHHHHHHHHHHhHhcCCCCCc
Q 001574 901 IGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKSAEDEEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWG 980 (1051)
Q Consensus 901 I~~vsa~lfav~~aLlk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~l~iP~~tLlllnlvaiv~Gi~r~i~~~~~~~~ 980 (1051)
|.+...++++.+.+++-.|.-++.+|.. |.. +--.++.+.++++.++....-.+ |+- ..
T Consensus 5 iegaLCY~lgwitGllFlllEre~~FVr---------------FHA---mQS~ltF~~l~~l~ill~~iP~I--g~l-ls 63 (105)
T COG4818 5 IEGALCYLLGWITGLLFLLLERESKFVR---------------FHA---MQSFLTFLGLWLLIILLAFIPYI--GWL-LS 63 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCccee---------------ehh---HHHHHHHHHHHHHHHHHHHhhhh--HHH-HH
Confidence 3455577888888888777666666621 111 11122233333333333222111 000 00
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCcch
Q 001574 981 PLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTI 1013 (1051)
Q Consensus 981 ~l~g~l~~~~Wvlvnl~Pflkgl~gR~~r~P~~ 1013 (1051)
.+.+...+..|+ .+++||.-|-+.|.|.+
T Consensus 64 ~~v~l~a~iLwl----v~mykAyrGe~fKlPv~ 92 (105)
T COG4818 64 GLVGLAAFILWL----VCMYKAYRGERFKLPVV 92 (105)
T ss_pred hHHHHHHHHHHH----HHHHHHHcCCeecCcee
Confidence 133344444554 68899988888898863
No 135
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=35.47 E-value=18 Score=30.90 Aligned_cols=28 Identities=29% Similarity=0.643 Sum_probs=19.5
Q ss_pred CcccccCCcccccCCCCeeecccCCCCcc
Q 001574 38 KLCRVCGDEIGLKENGELFVACHECGFPV 66 (1051)
Q Consensus 38 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpV 66 (1051)
-.|..||.++.++. ...-+.|..|++.|
T Consensus 7 Y~C~~Cg~~~~~~~-~~~~irCp~Cg~rI 34 (49)
T COG1996 7 YKCARCGREVELDQ-ETRGIRCPYCGSRI 34 (49)
T ss_pred EEhhhcCCeeehhh-ccCceeCCCCCcEE
Confidence 47899999985443 22347888888875
No 136
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=35.13 E-value=16 Score=36.27 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=9.3
Q ss_pred CCCCCCccccccc
Q 001574 80 QCCPGCNTRYKRH 92 (1051)
Q Consensus 80 ~~CPqCkt~Ykr~ 92 (1051)
..||+|+.+-.+.
T Consensus 89 ~~CP~Cgs~~~~i 101 (117)
T PRK00564 89 GVCEKCHSKNVII 101 (117)
T ss_pred CcCcCCCCCceEE
Confidence 3599999875443
No 137
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.72 E-value=32 Score=41.03 Aligned_cols=53 Identities=21% Similarity=0.483 Sum_probs=36.9
Q ss_pred CCCCccCC-CcccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCccccc
Q 001574 30 PPTRQSGS-KLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYK 90 (1051)
Q Consensus 30 ~~~~~~~~-~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Yk 90 (1051)
+.+..+.. -.|.||.+..- ++.+ -.|+--.|..|...-... ...||.|++.+.
T Consensus 18 ~~l~~Le~~l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred ccccccccccCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 34555544 48999988642 2333 368999999999654433 458999999985
No 138
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=34.22 E-value=30 Score=34.97 Aligned_cols=49 Identities=29% Similarity=0.769 Sum_probs=36.0
Q ss_pred cCCCcccccCCccccc--CCCCeeecccCCCCcccchhhhh---hhhcCCCCCCCCcc
Q 001574 35 SGSKLCRVCGDEIGLK--ENGELFVACHECGFPVCRPCYEY---ERSEGSQCCPGCNT 87 (1051)
Q Consensus 35 ~~~~~C~iCgd~vg~~--~~G~~fvaC~eC~FpVCR~Cyey---erkeG~~~CPqCkt 87 (1051)
..++.|..||....+- ..| -|+.|- .||.|+- |+. ...+....||+|+.
T Consensus 15 ~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 15 KTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred ccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 4577999999995554 458 999993 6999996 221 22355689999996
No 139
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=33.53 E-value=10 Score=37.34 Aligned_cols=29 Identities=31% Similarity=0.746 Sum_probs=15.7
Q ss_pred ecccCCCCcccchhhhhhhhcCCCCCCCCccccccc
Q 001574 57 VACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 92 (1051)
Q Consensus 57 vaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 92 (1051)
+-|+.|+. +++..+..-.||+|+.+..+.
T Consensus 71 ~~C~~Cg~-------~~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 71 ARCRDCGH-------EFEPDEFDFSCPRCGSPDVEI 99 (113)
T ss_dssp EEETTTS--------EEECHHCCHH-SSSSSS-EEE
T ss_pred EECCCCCC-------EEecCCCCCCCcCCcCCCcEE
Confidence 44666654 344444445599999986544
No 140
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=33.49 E-value=39 Score=27.45 Aligned_cols=43 Identities=26% Similarity=0.661 Sum_probs=31.4
Q ss_pred ccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCcc
Q 001574 40 CRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNT 87 (1051)
Q Consensus 40 C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt 87 (1051)
|.+|-.+. +++..+++. .|+=-+|..|.+-.- .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~~l~--~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRLT--SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCeEEc--ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88999887 333333332 679999999995554 67789999985
No 141
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.39 E-value=6.2 Score=45.73 Aligned_cols=45 Identities=22% Similarity=0.598 Sum_probs=37.7
Q ss_pred cccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCcccc
Q 001574 39 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRY 89 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Y 89 (1051)
+|.||-+=+-.+ .--.||+--+|+.|.--.-++||.-||-|++..
T Consensus 45 ~c~icl~llk~t------mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 45 ICPICLSLLKKT------MTTKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred ccHHHHHHHHhh------cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 789998776554 222489999999999999999999999999876
No 142
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=33.11 E-value=16 Score=42.82 Aligned_cols=67 Identities=28% Similarity=0.606 Sum_probs=42.5
Q ss_pred CCcccccCCcccccCCCCeeecccCCCCcccchh-hhhhhhcCCCCCCCCcccc---cc--ccCccccCCCCcCCC
Q 001574 37 SKLCRVCGDEIGLKENGELFVACHECGFPVCRPC-YEYERSEGSQCCPGCNTRY---KR--HKGCARVAGDEEDNF 106 (1051)
Q Consensus 37 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~C-yeyerkeG~~~CPqCkt~Y---kr--~kgsprv~gd~ee~~ 106 (1051)
+--|.-||+.+|+...--.-.+|- --.=--| |||--++|.+.||.|+.-- || .-|+|-|+.+-++-+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCs---HIfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vesest~~~ 437 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCS---HIFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESESTDRC 437 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchh---HHHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCcccccccccc
Confidence 457999999999985444455561 1111123 5677899999999998322 32 236777776654443
No 143
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=32.82 E-value=23 Score=26.68 Aligned_cols=28 Identities=39% Similarity=1.028 Sum_probs=11.9
Q ss_pred cccccCCcccccCCCCeeecccCCCCcccchh
Q 001574 39 LCRVCGDEIGLKENGELFVACHECGFPVCRPC 70 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~C 70 (1051)
.|.+|+.++. |+.+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPID----GGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS--------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCC----CCceEECccCCCccChhc
Confidence 5899998854 357888999999998777
No 144
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=32.42 E-value=19 Score=35.63 Aligned_cols=28 Identities=21% Similarity=0.460 Sum_probs=16.3
Q ss_pred ecccCCCCcccchhhhhhhhcCC-CCCCCCcccccc
Q 001574 57 VACHECGFPVCRPCYEYERSEGS-QCCPGCNTRYKR 91 (1051)
Q Consensus 57 vaC~eC~FpVCR~CyeyerkeG~-~~CPqCkt~Ykr 91 (1051)
.-|+.|+ ++++..+-. -.||+|+.+-.+
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~ 99 (114)
T PRK03681 71 CWCETCQ-------QYVTLLTQRVRRCPQCHGDMLR 99 (114)
T ss_pred EEcccCC-------CeeecCCccCCcCcCcCCCCcE
Confidence 4466665 244444333 569999976433
No 145
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=32.13 E-value=4.2e+02 Score=36.62 Aligned_cols=84 Identities=26% Similarity=0.367 Sum_probs=48.9
Q ss_pred cccchHHHHHHHhhCCcEEEEecCCCCcccccCCC-CHHHHHHHhhhhhccchhhhhhccCccccccCCCCCcccchh-h
Q 001574 748 SITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPI-NLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLA-Y 825 (1051)
Q Consensus 748 svTED~~Tg~rL~~rGWrsvY~~p~~~af~G~aP~-tl~~~l~QR~RWa~G~iQil~sk~~Pl~~g~~~~Lt~~QRL~-Y 825 (1051)
.+.||+..|+....||-++.++ +-.. .|..-+ .+..-..=-..-+.|+-|-.++|. .|-.+.++.+-.-|+ |
T Consensus 1173 nlsEDIfAG~n~tlRgG~itH~-EYiQ--vGKGRDvGlnqI~~FeaKia~G~GEQ~LSRd---~YrLG~~ldffRmLSfy 1246 (1679)
T KOG0916|consen 1173 NLSEDIFAGFNATLRGGNITHH-EYIQ--VGKGRDVGLNQISNFEAKIANGNGEQTLSRD---YYRLGTQLDFFRMLSFY 1246 (1679)
T ss_pred ccchHhhhhhhHHhhCCCcccc-eeee--cccccccCcchhhhhhhhhcCCCcchhhhHH---HHHhcccccHHHHHHHH
Confidence 6899999999999999999888 3222 122110 111112222456888888887764 222345666665554 4
Q ss_pred hhhhhhhhhHHH
Q 001574 826 TNTIVYPFTSIP 837 (1051)
Q Consensus 826 l~~~ly~l~sl~ 837 (1051)
+.+.-+++.++.
T Consensus 1247 ftt~GF~~n~m~ 1258 (1679)
T KOG0916|consen 1247 FTTVGFYFNNMF 1258 (1679)
T ss_pred hccccHHHHhHH
Confidence 444444555444
No 146
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=31.93 E-value=99 Score=36.59 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=28.4
Q ss_pred CCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhh
Q 001574 488 HHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMC 531 (1051)
Q Consensus 488 hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amc 531 (1051)
.+.|+-.|=-.+-... ..+..||-.+|||.|+| -++.|-.-
T Consensus 142 R~GKgEGMiiG~lLAk-~~g~~YVGFiDADNyiP--GaV~EYvk 182 (393)
T PRK14503 142 RSGKGEGMIIGLLLAK-ALGARYVGFVDADNYIP--GAVNEYVK 182 (393)
T ss_pred ecCcchHHHHHHHHHH-HhCCCeEeEeecccCCC--chHHHHHH
Confidence 4568888874333222 45899999999999985 56666443
No 147
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=31.69 E-value=22 Score=35.18 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=17.3
Q ss_pred ecccCCCCcccchhhhhhhhcCCCCCCCCccccccc
Q 001574 57 VACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 92 (1051)
Q Consensus 57 vaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 92 (1051)
.-|+.|+ ++++..+-.-.||+|+.+-.+.
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~~~i 99 (115)
T TIGR00100 71 CECEDCS-------EEVSPEIDLYRCPKCHGIMLQV 99 (115)
T ss_pred EEcccCC-------CEEecCCcCccCcCCcCCCcEE
Confidence 4465555 3344444456799999875443
No 148
>PRK11595 DNA utilization protein GntX; Provisional
Probab=31.69 E-value=31 Score=37.70 Aligned_cols=40 Identities=28% Similarity=0.750 Sum_probs=26.2
Q ss_pred CCcccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCcccc
Q 001574 37 SKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRY 89 (1051)
Q Consensus 37 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Y 89 (1051)
.+.|.+||..+..++ ..+|..|.+.-..- ...||+|+.+.
T Consensus 5 P~~C~~C~~~~~~~~------------~~lC~~C~~~l~~~-~~~C~~Cg~~~ 44 (227)
T PRK11595 5 PGLCWLCRMPLALSH------------WGICSVCSRALRTL-KTCCPQCGLPA 44 (227)
T ss_pred CCcCccCCCccCCCC------------CcccHHHHhhCCcc-cCcCccCCCcC
Confidence 357999998874321 23788887554333 35899998753
No 149
>PRK14973 DNA topoisomerase I; Provisional
Probab=31.18 E-value=35 Score=44.93 Aligned_cols=48 Identities=27% Similarity=0.711 Sum_probs=31.5
Q ss_pred CcccccCCccccc--CCCCeeecccCCCCcccchhhhhhhh-cC-----CCCCCCCccc
Q 001574 38 KLCRVCGDEIGLK--ENGELFVACHECGFPVCRPCYEYERS-EG-----SQCCPGCNTR 88 (1051)
Q Consensus 38 ~~C~iCgd~vg~~--~~G~~fvaC~eC~FpVCR~Cyeyerk-eG-----~~~CPqCkt~ 88 (1051)
..|..||.++-.. ..|. |..|. +||-|+-.+...+. .| .+.||.|+.+
T Consensus 589 ~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred ccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 4799999876432 2344 99996 66888855544222 12 3689999974
No 150
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=31.04 E-value=14 Score=32.62 Aligned_cols=13 Identities=31% Similarity=0.869 Sum_probs=7.7
Q ss_pred CCCCCCCcccccc
Q 001574 79 SQCCPGCNTRYKR 91 (1051)
Q Consensus 79 ~~~CPqCkt~Ykr 91 (1051)
.-+||+||+-|..
T Consensus 44 ~PVCP~Ck~iye~ 56 (58)
T PF11238_consen 44 FPVCPECKEIYES 56 (58)
T ss_pred CCCCcCHHHHHHh
Confidence 3456666666653
No 151
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=30.94 E-value=35 Score=28.22 Aligned_cols=31 Identities=32% Similarity=0.769 Sum_probs=24.9
Q ss_pred cccccCCcccccCCCCeeecccCCC-Ccccchhhhhh
Q 001574 39 LCRVCGDEIGLKENGELFVACHECG-FPVCRPCYEYE 74 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC~-FpVCR~Cyeye 74 (1051)
.|.+|+..|. | ....|.+|. |-+|.+||...
T Consensus 2 ~C~~C~~~i~----g-~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 2 SCDGCLKPIV----G-VRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCcCCCCCCc----C-CEEECCCCCCCcCHHHHHCcC
Confidence 5889998532 5 788999996 99999999643
No 152
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=30.78 E-value=51 Score=38.04 Aligned_cols=44 Identities=27% Similarity=0.601 Sum_probs=28.5
Q ss_pred CCCcccccCCc----ccc---cCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCccc
Q 001574 36 GSKLCRVCGDE----IGL---KENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTR 88 (1051)
Q Consensus 36 ~~~~C~iCgd~----vg~---~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~ 88 (1051)
+.+.|.+||.. +.. .++|.-+.-|.-|+. |..-.+-.||.|+..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~t---------eW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCAT---------EWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCC---------cccccCccCCCCCCC
Confidence 34599999988 111 257888999977753 333334567777653
No 153
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=30.50 E-value=45 Score=29.69 Aligned_cols=48 Identities=33% Similarity=0.695 Sum_probs=34.3
Q ss_pred CCcccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCC-CCCCCCc
Q 001574 37 SKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGS-QCCPGCN 86 (1051)
Q Consensus 37 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~-~~CPqCk 86 (1051)
..+|.-||-.|-..|++-.| +|.+|+=-+-.-|- --||-|+ -.||.|+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F-~CPnCGe~~I~Rc~-~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKF-PCPNCGEVEIYRCA-KCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEe-eCCCCCceeeehhh-hHHHcCCceECCCcC
Confidence 34899999999887777665 68899944444444 3366666 6799886
No 154
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=30.47 E-value=44 Score=30.15 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=30.9
Q ss_pred cccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCccccc
Q 001574 39 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYK 90 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Yk 90 (1051)
.|.||++ ||.+ +.++. ||.-.||.|-+--.++++..||.|+.+..
T Consensus 6 ~CpIt~~-lM~d----PVi~~--~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 6 LCPITGE-LMRD----PVILP--SGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp B-TTTSS-B-SS----EEEET--TSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred CCcCcCc-HhhC----ceeCC--cCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 6888875 5554 44443 56899999998888888899999988764
No 155
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.40 E-value=18 Score=34.91 Aligned_cols=44 Identities=34% Similarity=0.576 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccccccCC-------CCCCCCCCCCCchhhHhhccCCCC
Q 001574 410 KREYEEFKVRINALVSKAQKKPEEGWVMQDG-------TPWPGNNTRDHPGMIQVYLGSEGA 464 (1051)
Q Consensus 410 kreYee~k~rI~~l~~k~~~vp~~~w~m~dg-------~~w~g~~~rdHp~iiqv~l~~~g~ 464 (1051)
|-||+|+|+. . .++|.|+|= +.|.-.+--.||.+...|--.+||
T Consensus 20 k~eyqel~~~-------~----~d~W~m~Dlk~k~~~~sd~tiknlL~hPrl~k~L~iengG 70 (107)
T COG4707 20 KVEYQELKEK-------D----FDGWVMMDLKEKKSNRSDWTIKNLLLHPRLKKMLSIENGG 70 (107)
T ss_pred HHHHHHHHHh-------h----hcchhhhHHHHHhcccchhHHHHHhcCchhhhheeeecCc
Confidence 5699998862 1 368999876 356555566888888877666663
No 156
>COG1813 Predicted transcription factor, homolog of eukaryotic MBF1 [Transcription]
Probab=29.87 E-value=33 Score=36.25 Aligned_cols=35 Identities=26% Similarity=0.604 Sum_probs=20.7
Q ss_pred ccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcC
Q 001574 40 CRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEG 78 (1051)
Q Consensus 40 C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG 78 (1051)
|.|||-.+-.. - -|.-.-=-.-||+.||.|.++..
T Consensus 6 CEiCG~~i~~~---~-~v~vegsel~VC~~Cak~G~~~~ 40 (165)
T COG1813 6 CELCGREIDKP---I-KVKVEGAELTVCDDCAKFGTAAK 40 (165)
T ss_pred eeccccccCCC---e-eEEeecceeehhHHHHHhccCcc
Confidence 99999886521 0 11111223567899998885543
No 157
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=29.54 E-value=29 Score=35.90 Aligned_cols=43 Identities=37% Similarity=0.840 Sum_probs=26.4
Q ss_pred CCCcccccCCcccccCCCCeeecccCCCCcccchhhhhh-hhcCCCCCCCCcc
Q 001574 36 GSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYE-RSEGSQCCPGCNT 87 (1051)
Q Consensus 36 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyeye-rkeG~~~CPqCkt 87 (1051)
.+..|..||+ .-||+|.+|.= -|+--.+.. ...+-..||.|++
T Consensus 98 ~~~~C~~Cgg--------~rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCGG--------ARFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCCC--------cCeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 4567999985 47999988842 122212111 1234478999986
No 158
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=29.37 E-value=64 Score=28.71 Aligned_cols=49 Identities=29% Similarity=0.634 Sum_probs=35.6
Q ss_pred CCcccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCC-CCCCCCcc
Q 001574 37 SKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGS-QCCPGCNT 87 (1051)
Q Consensus 37 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~-~~CPqCkt 87 (1051)
...|.-||-.|.-.+.+ .-.+|.+|+=-+-+=|. .-||-++ -.||.|+-
T Consensus 7 ~~~CtSCg~~i~~~~~~-~~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 7 PPKCTSCGIEIAPREKA-VKFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCGF 56 (59)
T ss_pred CccccCCCCcccCCCcc-CEeeCCCCCCeeEeech-hHHhcCCceECCCCCC
Confidence 44899999998666656 44579999887455576 5567666 67999973
No 159
>PRK07219 DNA topoisomerase I; Validated
Probab=29.25 E-value=33 Score=44.49 Aligned_cols=53 Identities=28% Similarity=0.718 Sum_probs=30.8
Q ss_pred CCcccccCCccccc--CCCCeeecccCCCCcccchhhhhhh----hcCCCCCCCCccccccc
Q 001574 37 SKLCRVCGDEIGLK--ENGELFVACHECGFPVCRPCYEYER----SEGSQCCPGCNTRYKRH 92 (1051)
Q Consensus 37 ~~~C~iCgd~vg~~--~~G~~fvaC~eC~FpVCR~Cyeyer----keG~~~CPqCkt~Ykr~ 92 (1051)
...|..||..+... ..|. |..|. +||-|+--+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 34677787664432 2454 88885 5777753332211 12347899998876543
No 160
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=29.25 E-value=23 Score=45.28 Aligned_cols=55 Identities=33% Similarity=0.801 Sum_probs=41.6
Q ss_pred CCCcccccCCcccccCC----CCeeecccCC--------------------CCcccchhh-hhh----hhc--CCCCCCC
Q 001574 36 GSKLCRVCGDEIGLKEN----GELFVACHEC--------------------GFPVCRPCY-EYE----RSE--GSQCCPG 84 (1051)
Q Consensus 36 ~~~~C~iCgd~vg~~~~----G~~fvaC~eC--------------------~FpVCR~Cy-eye----rke--G~~~CPq 84 (1051)
.-.+|.-|-+++ .|.+ +=+|.-|..| .|+.|..|. ||. |+- ---+||.
T Consensus 67 D~a~C~~Cl~E~-~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~ 145 (711)
T TIGR00143 67 DVATCSDCLEEM-LDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPR 145 (711)
T ss_pred chhhHHHHHHHh-cCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCC
Confidence 455999999997 4433 4489999999 489999999 664 332 2358999
Q ss_pred Ccccccc
Q 001574 85 CNTRYKR 91 (1051)
Q Consensus 85 Ckt~Ykr 91 (1051)
|+=++.-
T Consensus 146 Cgp~l~l 152 (711)
T TIGR00143 146 CGPQLNF 152 (711)
T ss_pred CCcEEEE
Confidence 9998864
No 161
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=28.73 E-value=27 Score=43.57 Aligned_cols=44 Identities=25% Similarity=0.538 Sum_probs=25.8
Q ss_pred ccCCCcccccCCcccccCCCCe-----------eec-----ccCCCCcccchhhhhhhhcC
Q 001574 34 QSGSKLCRVCGDEIGLKENGEL-----------FVA-----CHECGFPVCRPCYEYERSEG 78 (1051)
Q Consensus 34 ~~~~~~C~iCgd~vg~~~~G~~-----------fva-----C~eC~FpVCR~CyeyerkeG 78 (1051)
.....+|.|||.+-.+..+-.. |++ =.-=.||||..|+..- .+|
T Consensus 195 ~~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~l-~~G 254 (593)
T PF09484_consen 195 SKKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALKL-EEG 254 (593)
T ss_pred cCCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHHH-HHH
Confidence 4456689999998444433221 222 0123789999999443 344
No 162
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=28.41 E-value=40 Score=27.81 Aligned_cols=44 Identities=25% Similarity=0.713 Sum_probs=31.5
Q ss_pred cccccCCcccccCCCCeeecccCCCCcccchhhhhhhh-----cCCCCCCCCc
Q 001574 39 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERS-----EGSQCCPGCN 86 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyeyerk-----eG~~~CPqCk 86 (1051)
+|++||. ..+++..+.|..|.--+=..|.....+ ++.=.||.|+
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 5899999 566778999999987766677754422 3456677665
No 163
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.18 E-value=67 Score=40.13 Aligned_cols=49 Identities=18% Similarity=0.127 Sum_probs=41.3
Q ss_pred CCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001574 302 PNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASM 353 (1051)
Q Consensus 302 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ 353 (1051)
.+.||.+-|+|+-+| |...+...||-|++..-=|.---.+.|.||+...
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 356999999999999 9999999999998887655545578899998765
No 164
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=27.63 E-value=46 Score=27.89 Aligned_cols=35 Identities=20% Similarity=0.525 Sum_probs=25.7
Q ss_pred cccccCCcccccCCCCeeecccCCC-CcccchhhhhhhhcC
Q 001574 39 LCRVCGDEIGLKENGELFVACHECG-FPVCRPCYEYERSEG 78 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC~-FpVCR~CyeyerkeG 78 (1051)
.|.+||-++.. +..-|-.++ +-+|.+||+-.|--+
T Consensus 2 ~C~~Cg~D~t~-----vryh~~~~~~~dLC~~CF~~G~f~~ 37 (45)
T cd02336 2 HCFTCGNDCTR-----VRYHNLKAKKYDLCPSCYQEGRFPS 37 (45)
T ss_pred cccCCCCccCc-----eEEEecCCCccccChHHHhCcCCCC
Confidence 69999999742 656666665 999999996554433
No 165
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=26.88 E-value=40 Score=29.75 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=12.9
Q ss_pred hcCCCCCCCCccccc------cccCccccCCCCcCCCCc
Q 001574 76 SEGSQCCPGCNTRYK------RHKGCARVAGDEEDNFDD 108 (1051)
Q Consensus 76 keG~~~CPqCkt~Yk------r~kgsprv~gd~ee~~~d 108 (1051)
.++|..-|=|-+|=| -..|+-||+|.+++++.+
T Consensus 15 ~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~~~~~~~ 53 (57)
T PF03884_consen 15 SPENPFRPFCSERCKLIDLGRWANEEYRIPGEPDDEDED 53 (57)
T ss_dssp SSSSS--SSSSHHHHHHHHS-SSSSS----SSS-SS-S-
T ss_pred cCCCCcCCcccHhhcccCHHHHhcCCcccCCCCCCcccc
Confidence 345555555555544 345666777776544433
No 166
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=26.82 E-value=23 Score=37.35 Aligned_cols=34 Identities=38% Similarity=0.880 Sum_probs=21.5
Q ss_pred CcccccCCcccc----cCCCCe-eecccCCCCcccchhh
Q 001574 38 KLCRVCGDEIGL----KENGEL-FVACHECGFPVCRPCY 71 (1051)
Q Consensus 38 ~~C~iCgd~vg~----~~~G~~-fvaC~eC~FpVCR~Cy 71 (1051)
.+|..||.+--. ..+|+. .+.-.|==.|+||.||
T Consensus 138 avC~~Cg~~A~~t~R~~~~~~~i~iGg~e~Y~~~Cr~cy 176 (176)
T PF00265_consen 138 AVCEVCGRKATFTQRIVDDGEQILIGGSEKYEPVCRKCY 176 (176)
T ss_dssp EE-TTTSSEE-EEEEEETTSSSS-TTSTTTEEEE-CTTH
T ss_pred cEECCCCCceeEEEEEcCCCCEEEECCCCeEEEechhhC
Confidence 589999988333 244543 5556787889999998
No 167
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=26.71 E-value=2e+02 Score=26.46 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=19.1
Q ss_pred ccchhhHHHHhhccCCCCCEEEEecCCCCC
Q 001574 491 KAGAMNALVRVSAVLTNAPFILNLDCDHYL 520 (1051)
Q Consensus 491 KAGalNallrvSa~~tngp~il~lDcD~~~ 520 (1051)
++..+|++.+. ..++.+|+.+|+|=++
T Consensus 58 ~~~~~~~~~~~---~~~~dWvl~~D~DEfl 84 (97)
T PF13704_consen 58 QRAWRNALIER---AFDADWVLFLDADEFL 84 (97)
T ss_pred HHHHHHHHHHh---CCCCCEEEEEeeeEEE
Confidence 34455566552 3588999999999874
No 168
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=26.67 E-value=63 Score=37.25 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=27.4
Q ss_pred CCCCCEEEEecCCCCCChHHHHHHHhhhhcCCCCCCcEEEE
Q 001574 505 LTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYV 545 (1051)
Q Consensus 505 ~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~vafV 545 (1051)
.+..+||+++|.|++ |.+++-+...-+..--....+.+||
T Consensus 125 ~a~T~~v~~~DvD~~-ps~~l~~~l~~~~~~~~~~~~~a~V 164 (317)
T PF13896_consen 125 GARTDYVFLLDVDFL-PSPGLYEKLLRFARRNIDKSKTAFV 164 (317)
T ss_pred hcCcceEEEecceee-eCcchHHHHHHHhhhhccCCceEEE
Confidence 356799999999997 7776666665555322234567776
No 169
>PRK14873 primosome assembly protein PriA; Provisional
Probab=26.43 E-value=44 Score=42.47 Aligned_cols=11 Identities=27% Similarity=0.757 Sum_probs=6.5
Q ss_pred CCCCCCCcccc
Q 001574 79 SQCCPGCNTRY 89 (1051)
Q Consensus 79 ~~~CPqCkt~Y 89 (1051)
...||.|+...
T Consensus 422 p~~Cp~Cgs~~ 432 (665)
T PRK14873 422 DWRCPRCGSDR 432 (665)
T ss_pred CccCCCCcCCc
Confidence 35666666653
No 170
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.28 E-value=6.9e+02 Score=30.97 Aligned_cols=11 Identities=18% Similarity=1.071 Sum_probs=6.1
Q ss_pred hHHHHHHHHHH
Q 001574 982 LFGKLFFAFWV 992 (1051)
Q Consensus 982 l~g~l~~~~Wv 992 (1051)
.+.-+..+||+
T Consensus 456 iLif~~~SfWI 466 (636)
T KOG0828|consen 456 ILIFMYYSFWI 466 (636)
T ss_pred HHHHHHHhhhH
Confidence 33334457787
No 171
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=26.04 E-value=28 Score=30.84 Aligned_cols=28 Identities=39% Similarity=1.019 Sum_probs=20.3
Q ss_pred CCcccccCCcccccCCCCeeecccCCCCcc
Q 001574 37 SKLCRVCGDEIGLKENGELFVACHECGFPV 66 (1051)
Q Consensus 37 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpV 66 (1051)
--+|.-||.+-.+. .|+ .+-|.||||.|
T Consensus 20 iYiCgdC~~en~lk-~~D-~irCReCG~RI 47 (62)
T KOG3507|consen 20 IYICGDCGQENTLK-RGD-VIRCRECGYRI 47 (62)
T ss_pred EEEecccccccccc-CCC-cEehhhcchHH
Confidence 34899999885553 344 47899999976
No 172
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.04 E-value=8e+02 Score=28.52 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=34.4
Q ss_pred HHHHHhhhhhccchhhhhhccCccc----------cc-cCCCCC-cccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhC
Q 001574 786 DRLHQVLRWALGSVEIFLSRHCPLW----------YG-YGGKLK-WLERLAYTNTIVYPFTSIPLLAYCTLPAICLLTG 852 (1051)
Q Consensus 786 ~~l~QR~RWa~G~iQil~sk~~Pl~----------~g-~~~~Lt-~~QRL~Yl~~~ly~l~sl~~liylllPil~LltG 852 (1051)
+.|++|-|=.++.-+....+++|-+ |- ....+. =.||+.|+...+|-+.++.++.-++.-+.+++-|
T Consensus 81 ~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~yylwm~~~~tL~~Niia~la~~i~g 159 (313)
T KOG3088|consen 81 QELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLWMGLVLTLLWNIIACLAWWIKG 159 (313)
T ss_pred HHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566666666664444444555522 10 011111 1577777766666555555555555555555544
No 173
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=25.44 E-value=46 Score=30.54 Aligned_cols=30 Identities=37% Similarity=0.866 Sum_probs=23.7
Q ss_pred CCCcccccCC--ccc-ccCCCCeeecccCCCCc
Q 001574 36 GSKLCRVCGD--EIG-LKENGELFVACHECGFP 65 (1051)
Q Consensus 36 ~~~~C~iCgd--~vg-~~~~G~~fvaC~eC~Fp 65 (1051)
.|-+|.-|+. .|. ..+||...+-|-+|+|.
T Consensus 7 AGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 7 AGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred cCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 5678999984 444 46889999999999984
No 174
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=24.74 E-value=60 Score=35.78 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=55.7
Q ss_pred hhcCCcHHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEecC
Q 001574 692 KRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVP 771 (1051)
Q Consensus 692 ~~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~p 771 (1051)
..+|....+.++.+..++|+++. -| || | .||-+++.||...|.+......
T Consensus 110 ~~~Gg~~~~~k~~f~~VNGf~n~----------------------f~----GW--G--gEDdd~~~Rl~~~g~~~~r~~~ 159 (219)
T cd00899 110 TYFGGVLALTREQFRKVNGFSNA----------------------YW----GW--G--GEDDDLYNRIKAAGLKITRPSG 159 (219)
T ss_pred cccccceeeEHHHHHHhCCcCCc----------------------Cc----cC--C--cchHHHHHHHHHCCCeEEeccC
Confidence 44788888899999999999862 23 23 2 4999999999999988766532
Q ss_pred CCC-c--c-------cccCCCCHHHHHHHhhhhhccchhhh
Q 001574 772 KRP-A--F-------KGSAPINLSDRLHQVLRWALGSVEIF 802 (1051)
Q Consensus 772 ~~~-a--f-------~G~aP~tl~~~l~QR~RWa~G~iQil 802 (1051)
... . + ....|.-+.....++.||+..++..+
T Consensus 160 ~~~~~~hL~H~~~~r~~~N~~r~~~l~~~~~~~~~dGLnsl 200 (219)
T cd00899 160 DTGRYKMIRHIHDKRNRDNPNRFALLQNSRERDHSDGLNSL 200 (219)
T ss_pred cccceeeeecCCCcccccCHHHHHHHHhhCeEeccCCccce
Confidence 111 0 0 12344556666778888888777655
No 175
>PRK04296 thymidine kinase; Provisional
Probab=24.72 E-value=35 Score=36.04 Aligned_cols=35 Identities=29% Similarity=0.583 Sum_probs=23.6
Q ss_pred CcccccCCccccc----------CCCCe-eecccCCCCcccchhhh
Q 001574 38 KLCRVCGDEIGLK----------ENGEL-FVACHECGFPVCRPCYE 72 (1051)
Q Consensus 38 ~~C~iCgd~vg~~----------~~G~~-fvaC~eC~FpVCR~Cye 72 (1051)
.+|..||.+--.+ .+|+. .+.-.|=-.|+||.||.
T Consensus 141 ~vC~~Cg~~a~~~~r~~~~~~~~~~~~~~~ig~~e~Y~~~Cr~c~~ 186 (190)
T PRK04296 141 AICVHCGRKATMNQRLIDGGPAVYEGPQVLVGGNESYEAVCRKHYK 186 (190)
T ss_pred EEccccCCccceEEEEeCCCCccCCCCEEEECCcCcEEehhHHhhh
Confidence 4899999873332 23443 35555666899999994
No 176
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.68 E-value=29 Score=35.26 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=8.4
Q ss_pred CCCCCCCCccc
Q 001574 78 GSQCCPGCNTR 88 (1051)
Q Consensus 78 G~~~CPqCkt~ 88 (1051)
..-.||.|+.+
T Consensus 106 ~~~~CP~Cgs~ 116 (135)
T PRK03824 106 AFLKCPKCGSR 116 (135)
T ss_pred cCcCCcCCCCC
Confidence 44569999976
No 177
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=24.51 E-value=1.6e+02 Score=34.71 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=28.6
Q ss_pred CCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhh
Q 001574 487 NHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMC 531 (1051)
Q Consensus 487 ~hh~KAGalNallrvSa~~tngp~il~lDcD~~~~~~~~Lr~amc 531 (1051)
-.+.|+-.|=-.+-... ..+..||-.+|||.|+| -++.|-.-
T Consensus 140 VR~GKgEGMiiG~lLAk-~~g~~YVGFiDaDNyiP--GaV~EYvk 181 (381)
T TIGR02460 140 VRSGKGEGMLLGLLLAK-AIGAEYVGFVDADNYFP--GAVNEYVK 181 (381)
T ss_pred eecCcchHHHHHHHHHH-HhCCceEeEeecccCCC--chHHHHHH
Confidence 34568888774333222 35899999999999985 56666443
No 178
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=24.36 E-value=26 Score=25.79 Aligned_cols=21 Identities=29% Similarity=0.873 Sum_probs=12.7
Q ss_pred cchhhhhhhhcCCCCCCCCccc
Q 001574 67 CRPCYEYERSEGSQCCPGCNTR 88 (1051)
Q Consensus 67 CR~CyeyerkeG~~~CPqCkt~ 88 (1051)
|..|-. +..++...||.|+++
T Consensus 5 Cp~Cg~-~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 5 CPNCGA-EIDPDAKFCPNCGAK 25 (26)
T ss_pred CcccCC-cCCcccccChhhCCC
Confidence 334433 346667788888765
No 179
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=24.25 E-value=35 Score=33.26 Aligned_cols=41 Identities=20% Similarity=0.511 Sum_probs=24.8
Q ss_pred ccccCCcccc-cCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCccccc
Q 001574 40 CRVCGDEIGL-KENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYK 90 (1051)
Q Consensus 40 C~iCgd~vg~-~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Yk 90 (1051)
|.+||...+. ...-+.|.=+ ...+.|-.|++ .||+|++.|=
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~-G~~~~v~~~~~---------~C~~CGe~~~ 42 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYK-GESITIGVPGW---------YCPACGEELL 42 (127)
T ss_pred CCCCCCccceeeeecceEEEc-CEEEEEeeeee---------ECCCCCCEEE
Confidence 8899965333 3334444444 34455544444 6999999883
No 180
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=24.17 E-value=27 Score=25.21 Aligned_cols=13 Identities=31% Similarity=0.969 Sum_probs=6.8
Q ss_pred hcCCCCCCCCccc
Q 001574 76 SEGSQCCPGCNTR 88 (1051)
Q Consensus 76 keG~~~CPqCkt~ 88 (1051)
.++.+-||+|+++
T Consensus 10 ~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 10 EDDAKFCPNCGTP 22 (23)
T ss_pred CCcCcchhhhCCc
Confidence 3444555555554
No 181
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.09 E-value=66 Score=29.73 Aligned_cols=48 Identities=23% Similarity=0.633 Sum_probs=32.2
Q ss_pred cccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCccccccc
Q 001574 39 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 92 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 92 (1051)
-|.-|+.++--+.+.-. +-=-||-| |.+|-|... .+.||.|+-..-+.
T Consensus 7 nCECCDrDLpp~s~dA~-ICtfEcTF--CadCae~~l---~g~CPnCGGelv~R 54 (84)
T COG3813 7 NCECCDRDLPPDSTDAR-ICTFECTF--CADCAENRL---HGLCPNCGGELVAR 54 (84)
T ss_pred CCcccCCCCCCCCCcee-EEEEeeeh--hHhHHHHhh---cCcCCCCCchhhcC
Confidence 58889988665543332 22237766 999986542 26899999877654
No 182
>PRK08359 transcription factor; Validated
Probab=24.04 E-value=30 Score=36.89 Aligned_cols=31 Identities=39% Similarity=0.914 Sum_probs=19.8
Q ss_pred CCcccccCCccccc-----CCCCeeecccCCCCcccchhh-hhhh
Q 001574 37 SKLCRVCGDEIGLK-----ENGELFVACHECGFPVCRPCY-EYER 75 (1051)
Q Consensus 37 ~~~C~iCgd~vg~~-----~~G~~fvaC~eC~FpVCR~Cy-eyer 75 (1051)
.-.|.|||.+|--. .+|-. .-||..|| .|-.
T Consensus 6 ~~~CEiCG~~i~g~~~~v~ieGae--------l~VC~~Ca~k~G~ 42 (176)
T PRK08359 6 PRYCEICGAEIRGPGHRIRIEGAE--------LLVCDRCYEKYGR 42 (176)
T ss_pred cceeecCCCccCCCCeEEEEcCeE--------EehHHHHHHHhCC
Confidence 34599999997422 23433 45778888 6644
No 183
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.86 E-value=41 Score=41.23 Aligned_cols=49 Identities=29% Similarity=0.680 Sum_probs=29.9
Q ss_pred ccCCCC-eeecccCCCCc-ccchhh---hhhhhcCCCCCCCCccccccccCccc
Q 001574 49 LKENGE-LFVACHECGFP-VCRPCY---EYERSEGSQCCPGCNTRYKRHKGCAR 97 (1051)
Q Consensus 49 ~~~~G~-~fvaC~eC~Fp-VCR~Cy---eyerkeG~~~CPqCkt~Ykr~kgspr 97 (1051)
++-+|- +++.|.+|+.. .|.-|= .|-++++.-.|..|+..++-..-||.
T Consensus 205 lnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~ 258 (505)
T TIGR00595 205 LNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQ 258 (505)
T ss_pred EeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCC
Confidence 344565 47778888765 366664 34455555667777766665555654
No 184
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=23.56 E-value=32 Score=31.65 Aligned_cols=48 Identities=27% Similarity=0.380 Sum_probs=30.5
Q ss_pred hcCCcHHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHhhCCcEEEEec
Q 001574 693 RFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCV 770 (1051)
Q Consensus 693 ~fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~V~sc~YE~~T~WGkevGw~ygsvTED~~Tg~rL~~rGWrsvY~~ 770 (1051)
-+|....+.++.+.++||+++. -| || |. ||.+++.|+...|.++....
T Consensus 19 ~~Gg~~~~~~~~f~~vnGfde~----------------------f~----gW--G~--ED~Dl~~Rl~~~g~~~~~~~ 66 (78)
T PF02709_consen 19 FFGGVFAISREDFEKVNGFDER----------------------FW----GW--GG--EDDDLYNRLWKAGLKIVRVP 66 (78)
T ss_dssp ---SEEEEEHHHHHHTTSS-SS-----------------------T----SC--SS--HHHHHHHHHHHTT---B-SS
T ss_pred eeEEEEEEeHHHHHHcCCCCcc----------------------cc----cc--Cc--cHHHHHHHHHHcCCeEEecC
Confidence 3577777788888999999862 11 22 33 99999999999999877653
No 185
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=23.52 E-value=53 Score=28.65 Aligned_cols=12 Identities=50% Similarity=0.963 Sum_probs=9.8
Q ss_pred cccccCCccccc
Q 001574 39 LCRVCGDEIGLK 50 (1051)
Q Consensus 39 ~C~iCgd~vg~~ 50 (1051)
.|..||.+|-+.
T Consensus 4 ~CP~CG~~iev~ 15 (54)
T TIGR01206 4 ECPDCGAEIELE 15 (54)
T ss_pred CCCCCCCEEecC
Confidence 688899988775
No 186
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=23.20 E-value=47 Score=44.55 Aligned_cols=48 Identities=27% Similarity=0.659 Sum_probs=31.0
Q ss_pred CcccccCCcccccCCCCeeecccCCCCcc-----cchhhhh-h-hhcCCCCCCCCccccccc
Q 001574 38 KLCRVCGDEIGLKENGELFVACHECGFPV-----CRPCYEY-E-RSEGSQCCPGCNTRYKRH 92 (1051)
Q Consensus 38 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpV-----CR~Cyey-e-rkeG~~~CPqCkt~Ykr~ 92 (1051)
..|.-||..+-. .-|.+|+-+. |..|=-. + -..+...||.|+++-...
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 478888876422 2788888664 7777632 1 112356899999887654
No 187
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=23.09 E-value=4.3e+02 Score=28.46 Aligned_cols=25 Identities=8% Similarity=0.303 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhc
Q 001574 950 LIPPTTLIILNMVGVVAGVSDAINN 974 (1051)
Q Consensus 950 ~iP~~tLlllnlvaiv~Gi~r~i~~ 974 (1051)
.+.-..|+++.+++++.|+...+..
T Consensus 81 ~~ld~~L~~~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 81 MALDNSLLFFGIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455567778888888888876643
No 188
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.68 E-value=35 Score=30.54 Aligned_cols=17 Identities=47% Similarity=1.007 Sum_probs=15.1
Q ss_pred hhcCCCCCCCCcccccc
Q 001574 75 RSEGSQCCPGCNTRYKR 91 (1051)
Q Consensus 75 rkeG~~~CPqCkt~Ykr 91 (1051)
.++|.-.||=|.|+|+-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 57899999999999974
No 189
>PF04641 Rtf2: Rtf2 RING-finger
Probab=22.58 E-value=67 Score=35.95 Aligned_cols=52 Identities=29% Similarity=0.591 Sum_probs=38.3
Q ss_pred cCCCcccccCCcccccCCCC-eeecccCCCCcccchhhhhhhhcCCCCCCCCccccccc
Q 001574 35 SGSKLCRVCGDEIGLKENGE-LFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 92 (1051)
Q Consensus 35 ~~~~~C~iCgd~vg~~~~G~-~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 92 (1051)
...-+|.|++... +|. -||+=--||=-+|..|.+-- + ....||.|.++|...
T Consensus 111 ~~~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCccc----CCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCccccC
Confidence 3444999998776 454 58887788877888888444 4 456799999999753
No 190
>PRK12438 hypothetical protein; Provisional
Probab=22.55 E-value=9.2e+02 Score=32.53 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhh
Q 001574 984 GKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLLW 1029 (1051)
Q Consensus 984 g~l~~~~Wvlvnl~Pflkgl~gR~~r~P~~v~~~s~lla~~f~~l~ 1029 (1051)
++.+.++=+++...-|+.+++.|+-|.|.+.+..-++.+++...+|
T Consensus 259 a~~iL~~ia~i~Av~f~~~i~~r~~rlp~i~~~llv~~~iv~g~i~ 304 (991)
T PRK12438 259 AKLILVAIAVLCAVAFFAAIFLRDLRIPAMAAALLVLSAILVGGLW 304 (991)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566667777778999887766555555544443
No 191
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=22.46 E-value=52 Score=26.14 Aligned_cols=31 Identities=26% Similarity=0.597 Sum_probs=22.9
Q ss_pred CCcccccCCcccccCCCCeeecccCCCCcccchhhhhh
Q 001574 37 SKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYE 74 (1051)
Q Consensus 37 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyeye 74 (1051)
...|..|++.. .-.-|.+|.-++|..|....
T Consensus 3 ~~~C~~H~~~~-------~~~~C~~C~~~~C~~C~~~~ 33 (42)
T PF00643_consen 3 EPKCPEHPEEP-------LSLFCEDCNEPLCSECTVSG 33 (42)
T ss_dssp SSB-SSTTTSB-------EEEEETTTTEEEEHHHHHTS
T ss_pred CccCccCCccc-------eEEEecCCCCccCccCCCCC
Confidence 45777777542 45779999999999999654
No 192
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=22.36 E-value=57 Score=38.98 Aligned_cols=35 Identities=23% Similarity=0.526 Sum_probs=23.3
Q ss_pred eeecccCCCCcccchhhhhhhh-cCCCCCCCCcccccccc
Q 001574 55 LFVACHECGFPVCRPCYEYERS-EGSQCCPGCNTRYKRHK 93 (1051)
Q Consensus 55 ~fvaC~eC~FpVCR~Cyeyerk-eG~~~CPqCkt~Ykr~k 93 (1051)
..++|+||+--+=+| ..+ .+.-.||+|++..-|++
T Consensus 12 ~~~~C~~Cd~l~~~~----~l~~g~~a~CpRCg~~L~~~~ 47 (403)
T TIGR00155 12 KHILCSQCDMLVALP----RIESGQKAACPRCGTTLTVGW 47 (403)
T ss_pred CeeeCCCCCCccccc----CCCCCCeeECCCCCCCCcCCC
Confidence 467899998764333 122 23357999999987653
No 193
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=22.34 E-value=47 Score=28.02 Aligned_cols=38 Identities=24% Similarity=0.549 Sum_probs=29.9
Q ss_pred CCcccccCCcccccCCCCeeecccCCCCcccchhhhhhhhc
Q 001574 37 SKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSE 77 (1051)
Q Consensus 37 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyeyerke 77 (1051)
.+.|.+|+...+...+ -.-|.-|+--+|..|..+....
T Consensus 2 ~~~C~~C~~~F~~~~r---k~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 2 ASSCMGCGKPFTLTRR---RHHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred cCcCcccCccccCCcc---ccccCcCcCCcChHHcCCeeec
Confidence 4689999998887433 2678999999999999877553
No 194
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=22.12 E-value=58 Score=42.61 Aligned_cols=54 Identities=22% Similarity=0.436 Sum_probs=31.1
Q ss_pred CCCcccccCCc--ccccC-CCCeeecccCCCCcccchhhhhhh-----------hcCCCCCCCCccccccc
Q 001574 36 GSKLCRVCGDE--IGLKE-NGELFVACHECGFPVCRPCYEYER-----------SEGSQCCPGCNTRYKRH 92 (1051)
Q Consensus 36 ~~~~C~iCgd~--vg~~~-~G~~fvaC~eC~FpVCR~Cyeyer-----------keG~~~CPqCkt~Ykr~ 92 (1051)
....|..||.. +.... .| .|++|. +||-|+-=....+ ......||.|+.++...
T Consensus 591 ~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK 658 (860)
T PRK06319 591 TEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVR 658 (860)
T ss_pred cCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEe
Confidence 44689999864 22223 45 699994 5777742111111 11246899998666543
No 195
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=21.33 E-value=1e+02 Score=25.97 Aligned_cols=45 Identities=31% Similarity=0.671 Sum_probs=28.0
Q ss_pred cccccCCcccccCCCCeeecccCCCC---cccchhhhhhh-hcCCCCCCCCc
Q 001574 39 LCRVCGDEIGLKENGELFVACHECGF---PVCRPCYEYER-SEGSQCCPGCN 86 (1051)
Q Consensus 39 ~C~iCgd~vg~~~~G~~fvaC~eC~F---pVCR~Cyeyer-keG~~~CPqCk 86 (1051)
+|.||-+ +-+++..++.|| .|.- -|=+.|.+.=. +.++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5899987 333444456778 5542 24456775444 34567899996
No 196
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.94 E-value=36 Score=26.72 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=7.3
Q ss_pred CCCCCCCcccc
Q 001574 79 SQCCPGCNTRY 89 (1051)
Q Consensus 79 ~~~CPqCkt~Y 89 (1051)
-..||-|+.+-
T Consensus 18 p~~CP~Cg~~~ 28 (34)
T cd00729 18 PEKCPICGAPK 28 (34)
T ss_pred CCcCcCCCCch
Confidence 35788887653
No 197
>PTZ00293 thymidine kinase; Provisional
Probab=20.87 E-value=45 Score=36.53 Aligned_cols=35 Identities=20% Similarity=0.717 Sum_probs=22.3
Q ss_pred CcccccCCccccc----CCCCe-eecccCCCCcccchhhh
Q 001574 38 KLCRVCGDEIGLK----ENGEL-FVACHECGFPVCRPCYE 72 (1051)
Q Consensus 38 ~~C~iCgd~vg~~----~~G~~-fvaC~eC~FpVCR~Cye 72 (1051)
.+|..||.+--.+ ++|+. .+.=+|=--++||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 5999999884332 33443 23333444789999995
No 198
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=20.74 E-value=5.6e+02 Score=29.33 Aligned_cols=139 Identities=19% Similarity=0.224 Sum_probs=0.0
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCc--hhhhHhhHHHHHHhhhhhhhhhhccCCCCCccccc
Q 001574 310 VFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGAS--MLLFDALSETAEFARRWVPFCKKYIIEPRAPEFYF 387 (1051)
Q Consensus 310 vfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~--~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~YF 387 (1051)
|+|.| |++..-...-.=.-.+++++||.+++++=++=.-.+ .-|.+.|.++..--.+=-+.-.+|+=-.--.+-+-
T Consensus 27 VLILt--plrna~~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~ 104 (269)
T PF03452_consen 27 VLILT--PLRNAASFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRKDFG 104 (269)
T ss_pred EEEEE--ecCCchHHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCc
Q ss_pred ccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCC-CCCchhhHhhccCC
Q 001574 388 SQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNT-RDHPGMIQVYLGSE 462 (1051)
Q Consensus 388 s~k~d~~~~~~~~~f~~err~mkreYee~k~rI~~l~~k~~~vp~~~w~m~dg~~w~g~~~-rdHp~iiqv~l~~~ 462 (1051)
....-.-++.-..+--++||++ |..--|.|...+.+ |.+.| .-|-+... ...|.|||-|.++.
T Consensus 105 ~~~~~~~~~RH~~~~Q~~RR~~------mAraRN~LL~~aL~-p~~sw-----VlWlDaDIv~~P~~lI~dli~~~ 168 (269)
T PF03452_consen 105 QQLSQDRSERHAFEVQRPRRRA------MARARNFLLSSALG-PWHSW-----VLWLDADIVETPPTLIQDLIAHD 168 (269)
T ss_pred ccccCchhhccchhhHHHHHHH------HHHHHHHHHHhhcC-CcccE-----EEEEecCcccCChHHHHHHHhCC
No 199
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=20.67 E-value=5.9e+02 Score=28.36 Aligned_cols=60 Identities=18% Similarity=0.378 Sum_probs=44.5
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhhHhhHHHHHHhhhhhhhhhhccC
Q 001574 310 VFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYII 378 (1051)
Q Consensus 310 vfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~i 378 (1051)
|+|+|-+ ..|-|+-.|+-.+++-.++.+.+.+.=-.||...+...-| + ..+=-||+.|+.
T Consensus 4 iLlatlG---~sPqVVTETL~aL~~~g~~p~EV~vitT~~~~~~~~~~ll-~-----g~~~~l~~~y~~ 63 (224)
T PF09623_consen 4 ILLATLG---TSPQVVTETLYALAQQGEIPDEVHVITTRDGAVRAALRLL-D-----GGLQRLCQDYYL 63 (224)
T ss_pred EEEEecC---CCchHHHHHHHHHHcCCCCCCEEEEEECCChHHHHHHHHH-H-----HHHHHHHHhhcC
Confidence 7899988 7788999999999999998898888888888776533333 0 012247887764
No 200
>PF12773 DZR: Double zinc ribbon
Probab=20.55 E-value=72 Score=26.40 Aligned_cols=12 Identities=33% Similarity=0.935 Sum_probs=7.2
Q ss_pred CCcccccCCccc
Q 001574 37 SKLCRVCGDEIG 48 (1051)
Q Consensus 37 ~~~C~iCgd~vg 48 (1051)
...|..||-.+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 346666666655
No 201
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=20.33 E-value=47 Score=34.53 Aligned_cols=46 Identities=28% Similarity=0.619 Sum_probs=40.3
Q ss_pred cccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCcccccc
Q 001574 46 EIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKR 91 (1051)
Q Consensus 46 ~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr 91 (1051)
-||+..+|-.=+-|.-|+|.-|..=.|-++..-+-+=|+|--+|--
T Consensus 77 LIG~Kasg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~iD 122 (182)
T COG4739 77 LIGVKASGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYID 122 (182)
T ss_pred EEEeccCCccccccccccchhHHHHHHHHhhhhhccCcchhhhhhh
Confidence 4788888888899999999999998888888888899999999963
No 202
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=20.18 E-value=52 Score=39.49 Aligned_cols=33 Identities=24% Similarity=0.625 Sum_probs=22.6
Q ss_pred ecccCCCCcccchhhhhhhhcCCCCCCCCccccccc
Q 001574 57 VACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 92 (1051)
Q Consensus 57 vaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 92 (1051)
++|++|+--+.+|=- +..+...||+|+++..|+
T Consensus 11 ~~C~~Cd~l~~~~~l---~~g~~a~CpRCg~~L~~~ 43 (419)
T PRK15103 11 ILCPQCDMLVALPRL---EHGQKAACPRCGTTLTVR 43 (419)
T ss_pred ccCCCCCceeecCCC---CCCCeeECCCCCCCCcCC
Confidence 789999887654421 122235799999998765
No 203
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=20.16 E-value=42 Score=29.90 Aligned_cols=42 Identities=31% Similarity=0.711 Sum_probs=32.2
Q ss_pred eecccCCCCcccchhhhhhhhcCCCCCCCCccccccccCccccCCCC
Q 001574 56 FVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRHKGCARVAGDE 102 (1051)
Q Consensus 56 fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~ 102 (1051)
.+|| |+||-=..|-+..+.-.||.||.-|.-..|-|..--||
T Consensus 8 iLaC-----P~~kg~L~~~~~~~~L~c~~~~~aYpI~dGIPvlL~~e 49 (60)
T COG2835 8 ILAC-----PVCKGPLVYDEEKQELICPRCKLAYPIRDGIPVLLPDE 49 (60)
T ss_pred eeec-----cCcCCcceEeccCCEEEecccCceeecccCccccCchh
Confidence 6788 55554477777777899999999999888888765554
No 204
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.03 E-value=51 Score=35.22 Aligned_cols=44 Identities=25% Similarity=0.644 Sum_probs=35.3
Q ss_pred CCCcccccCCcccccCCCCeeecccCCCCcccchhhhhhhhcCCCCCCCCcc
Q 001574 36 GSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNT 87 (1051)
Q Consensus 36 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt 87 (1051)
.-..|.||-+..-.. ....|+--.|+.|-+.-.. +.-.||.|+.
T Consensus 12 ~~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 345899998885443 5657899999999988777 8799999994
No 205
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=20.03 E-value=52 Score=29.74 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=16.0
Q ss_pred eeecccCCCCcccchhhhhhhhcCCCCCCCCccc
Q 001574 55 LFVACHECGFPVCRPCYEYERSEGSQCCPGCNTR 88 (1051)
Q Consensus 55 ~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~ 88 (1051)
.|.||.+|.+-+ ++ +.||-|+..
T Consensus 4 ~~~AC~~C~~i~----------~~-~~Cp~Cgs~ 26 (64)
T PRK06393 4 QYRACKKCKRLT----------PE-KTCPVHGDE 26 (64)
T ss_pred hhhhHhhCCccc----------CC-CcCCCCCCC
Confidence 356777777665 23 599999984
Done!