Query 001574
Match_columns 1051
No_of_seqs 357 out of 1861
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 16:19:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001574.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_873-876//hhsearch_pdb/001574hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 1.0 1 1 455.0 46.8 491 228-1004 65-571 (802)
2 1weo_A Cellulose synthase, cat 1.0 1 1 303.2 8.1 88 25-112 4-91 (93)
3 2z86_A Chondroitin synthase; G 1.0 1 1 129.0 17.2 129 302-555 89-218 (625)
4 1xhb_A Polypeptide N-acetylgal 1.0 1 1 119.3 15.0 122 301-545 24-148 (472)
5 2ffu_A Ppgalnact-2, polypeptid 1.0 1 1 116.9 10.6 113 302-536 62-174 (501)
6 2d7i_A Polypeptide N-acetylgal 1.0 1 1 116.6 14.6 116 302-536 108-224 (570)
7 2z86_A Chondroitin synthase; G 1.0 1 1 109.3 11.1 125 303-554 372-497 (625)
8 1qg8_A Protein (spore coat pol 1.0 1 1 106.8 5.3 124 306-552 1-129 (255)
9 3bcv_A Putative glycosyltransf 1.0 1 1 100.5 12.4 110 304-536 3-112 (240)
10 3l7i_A Teichoic acid biosynthe 1.0 1 1 100.4 0.0 118 305-547 1-118 (729)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=455.01 Aligned_cols=491 Identities=24% Similarity=0.352 Sum_probs=375.7
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 589-999999999999998821468883-----35799999999999999998320224535664124445453302799
Q 001574 228 YRI-VIILRLFILAFFLRFRILTPAYDA-----FPLWIISVICEVWFAFSWILDQFPKWFPITRETYLDRLSIRFEREGE 301 (1051)
Q Consensus 228 yR~-~i~~~l~~l~~yl~~Ri~~~~~~a-----~~lWl~~~~~E~~f~~~wil~q~~kw~Pv~R~~~~drL~~r~~~~~~ 301 (1051)
.|+ ++++.+++.+.|++||++.+++.. +++|+.++++|+++.+.|++..+..|.|..|...++. .
T Consensus 65 ~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~---------~ 135 (802)
T 4hg6_A 65 PRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL---------Q 135 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC---------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---------C
T ss_conf 5789999999999999999866006775305899999999999999999999999998365678888989---------8
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99998706998048999999799999999988397999983799906999424357667899995321123341157789
Q 001574 302 PNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPR 381 (1051)
Q Consensus 302 ~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~YvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepR 381 (1051)
++++|.|+|+||||| |++.++.+|+.|++++|||.+++.++|.|||..+-|.+.
T Consensus 136 ~~~~P~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~----------------------- 189 (802)
T 4hg6_A 136 PEELPTVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS----------------------- 189 (802)
T ss_dssp TTTCCCEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC-----------------------
T ss_pred CCCCCCEEEEEEECC---CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC-----------------------
T ss_conf 567984899999799---989999999999984669998289999989987642234-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 93110123333234878703699999999999999999999776410798444334689999999988990246755057
Q 001574 382 APEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGS 461 (1051)
Q Consensus 382 ~Pe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~~ 461 (1051)
..|+.+++.. +-...++.+.++
T Consensus 190 ----------------~d~~i~~~~~-------~~~~~l~~~~~~----------------------------------- 211 (802)
T 4hg6_A 190 ----------------PDPELAQKAQ-------ERRRELQQLCRE----------------------------------- 211 (802)
T ss_dssp ----------------SSHHHHHHHH-------HHHHHHHHHHHH-----------------------------------
T ss_pred ----------------CCHHHHHHHH-------HHHHHHHHHHHH-----------------------------------
T ss_conf ----------------8878999988-------666999999985-----------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH-CCCCCCC
Q ss_conf 898665588778189994567999997875101158887402578998999954998889289999995411-1877997
Q 001574 462 EGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGK 540 (1051)
Q Consensus 462 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tn~p~il~lDcD~~~~n~~~Lr~amcf~-~Dp~~g~ 540 (1051)
.++.|+.|++ +++.||||+|.+++. ++++||+.+|||+. ..|++|++.+.+| .||
T Consensus 212 -----------~~v~~i~~~~----~~~GKa~alN~gl~~----a~gd~Il~lDaD~~-~~pd~L~~lv~~~~~dp---- 267 (802)
T 4hg6_A 212 -----------LGVVYSTRER----NEHAKAGNMSAALER----LKGELVVVFDADHV-PSRDFLARTVGYFVEDP---- 267 (802)
T ss_dssp -----------HTCEEEECSS----CCSHHHHHHHHHHHH----CCCSEEEECCTTEE-ECTTHHHHHHHHHHHSS----
T ss_pred -----------CCCEEEEECC----CCCCCHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHCCC----
T ss_conf -----------6947999268----877636899999996----59999999999988-18589999999984099----
Q ss_pred CEEEEECCCCCCCCCC-------CCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCEEHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 2899813721169997-------773310124687754034457887301046830013321189999777798887899
Q 001574 541 KLCYVQFPQRFDGIDR-------HDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDC 613 (1051)
Q Consensus 541 ~vafVQ~PQ~F~n~d~-------~D~y~n~~~vFfd~~~~glDg~qgp~y~GTgc~fRR~ALyg~~p~~~~~~~~~~~~~ 613 (1051)
+++.||.|+.+.|.++ .+++.+++..||.....+.+.+++++++|+++++||+++.
T Consensus 268 ~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~----------------- 330 (802)
T 4hg6_A 268 DLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALD----------------- 330 (802)
T ss_dssp SCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHH-----------------
T ss_pred CEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHH-----------------
T ss_conf 859996567976785576544477651678999988887547643884542664032499999-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99988545799865566556897765443012222113644334799985534677520145035655433233445420
Q 001574 614 WPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKR 693 (1051)
Q Consensus 614 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1051)
T Consensus 331 -------------------------------------------------------------------------------- 330 (802)
T 4hg6_A 331 -------------------------------------------------------------------------------- 330 (802)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 38728998655442099999988325899988831345431354332126012543422999999863891999966899
Q 001574 694 FGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKR 773 (1051)
Q Consensus 694 fG~s~~f~~s~l~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~eVGw~ygsITEDi~Tg~rLh~rGWrSvY~~p~~ 773 (1051)
+.||+++ ++++||.+++++++.+||++.|+++..
T Consensus 331 -------------~vGgf~~---------------------------------~~~~ED~~l~~rl~~~G~ri~~~~~~~ 364 (802)
T 4hg6_A 331 -------------EAGGFAG---------------------------------ETITEDAETALEIHSRGWKSLYIDRAM 364 (802)
T ss_dssp -------------HHTTCCC---------------------------------SSSSHHHHHHHHHHTTTCCEEECCCCC
T ss_pred -------------HCCCCCC---------------------------------CCCCHHHHHHHHHHHCCCEEEEECCCE
T ss_conf -------------7088678---------------------------------880309999999997699599936887
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 74235679798999988664321132343311574311348988701002434235555567999999999999999178
Q 001574 774 PAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTLPAICLLTGK 853 (1051)
Q Consensus 774 ~Af~G~aPetl~~~l~QR~RWA~G~iQIl~sk~~Pl~~g~~~~Lt~~QRL~Yl~~~ly~l~sip~liylllPil~LltGi 853 (1051)
+++.+|++++++++||.||++|.+|+++. ++|++ .+++++.||+.|+...++|+.+++.++++++|++++++++
T Consensus 365 --~~~~~p~t~~~~~~Qr~RW~~G~~q~l~~-~~pl~---~~~l~~~~rl~~l~~~~~~~~~~~~li~ll~p~~~ll~~~ 438 (802)
T 4hg6_A 365 --IAGLQPETFASFIQQRGRWATGMMQMLLL-KNPLF---RRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGI 438 (802)
T ss_dssp --EEECCCCSHHHHHHHHHHHHHHHHHHHHH-SCTTS---CSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCC
T ss_pred --EEECCCCCHHHHHHHHHHHHCCHHHHHHH-HCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --99668889999999999997008999988-59234---6899899999999999999999999999999999999967
Q ss_pred CCHHCCCHHHHHHHH-HHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCEEECCC
Q ss_conf 512212058999999-999999999985510237644322233236788788899999999999-986298877063769
Q 001574 854 FIIPTLNNLASIWFL-ALFLSIIVTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLL-KVLAGVDTNFTVTSK 931 (1051)
Q Consensus 854 ~iip~~s~~~~~~fi-~lfls~~~~~lLe~~wsG~si~~wWrneq~W~I~~vsa~lfAv~~aLl-k~Lgg~~~~F~VTpK 931 (1051)
.++......+..+++ ++++...+...+. .+.. ..|| ++.++.+.+. ..+.+++ ..+++++.+|.||+|
T Consensus 439 ~~~~~~~~~~~~~~lp~~l~~~~~~~~~~---~~~r-~~~~-~~l~~~~~~~-----~~~~a~l~~l~~~~~~~f~VT~K 508 (802)
T 4hg6_A 439 EIFVATFEEVLAYMPGYLAVSFLVQNALF---ARQR-WPLV-SEVYEVAQAP-----YLARAIVTTLLRPRSARFAVTAK 508 (802)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHHHHHHH---TTTS-CTTH-HHHHHHHHHH-----HHHHHHHHHHHSTTCCCCCCCCC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHH---CCCH-HHHH-HHHHHHHHHH-----HHHHHHHHHHHCCCCCCCEECCC
T ss_conf 87633899999999999999999999995---6747-9999-9999999999-----99999999991888982027799
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9875333321430343103799999999999999998875715999886057999999999997999998771
Q 001574 932 SAEDEEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLM 1004 (1051)
Q Consensus 932 g~~~~~~~~ly~f~ws~l~iP~~~LlllnLvaiv~Gi~r~i~~~~~~w~~l~g~li~~~Wvi~~l~Pflkgl~ 1004 (1051)
+...+.. +-+ .+++|++++++++++++++|+++..... .+..+.+++++|+++|++.+..++.
T Consensus 509 g~~~~~~-----~~~-~~~~p~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~w~~~~l~~l~~~~~ 571 (802)
T 4hg6_A 509 DETLSEN-----YIS-PIYRPLLFTFLLCLSGVLATLVRWVAFP----GDRSVLLVVGGWAVLNVLLVGFALR 571 (802)
T ss_dssp CCCCSSC-----CBC-TTCHHHHHHHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCC-----CHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7656653-----122-6899999999999999999999996067----7634200115999999999999999
No 2
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=1.00 E-value=1 Score=303.21 Aligned_cols=88 Identities=52% Similarity=1.118 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76789987755987556448764345799801104678986120115636621898788885222244686544789767
Q 001574 25 NEEQRPPTRQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRHKGCARVAGDEED 104 (1051)
Q Consensus 25 ~~~~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~ee 104 (1051)
.++++|||+++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+|||||||||||||||||+|||+|
T Consensus 4 g~~~~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GDe~e 83 (93)
T 1weo_A 4 GSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDE 83 (93)
T ss_dssp SSSSSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77788752005887261145743547789888763006773518899999852674055458762233688876666444
Q ss_pred CCCCCCHH
Q ss_conf 78763021
Q 001574 105 NFDDDFED 112 (1051)
Q Consensus 105 ~~~dd~~~ 112 (1051)
+++||+++
T Consensus 84 ~d~dD~~~ 91 (93)
T 1weo_A 84 EDIDSGPS 91 (93)
T ss_dssp CCSCCCCS
T ss_pred CCCCCCCC
T ss_conf 65332445
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=128.96 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=99.5
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99998706998048999999799999999988397999983799906999424357667899995321123341157789
Q 001574 302 PNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPR 381 (1051)
Q Consensus 302 ~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~YvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepR 381 (1051)
+...|.|+|+|+|+| | +..+..|+.|+++.+||. .+.++|.|||..+- +.+.++
T Consensus 89 ~~~~p~vsviIp~~n---~-~~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~-------t~~~~~-------------- 142 (625)
T 2z86_A 89 QLIIDGLSIVIPTYN---R-AKILAITLACLCNQKTIY-DYEVIVADDGSKEN-------IEEIVR-------------- 142 (625)
T ss_dssp -CCCCCEEEEEEESS---C-HHHHHHHHHHHHTCCCSS-CEEEEEEEESCSSC-------HHHHHH--------------
T ss_pred CCCCCCEEEEEECCC---C-HHHHHHHHHHHHHHCCCC-CEEEEEEECCCCHH-------HHHHHH--------------
T ss_conf 346982799990388---5-788999999998436579-86999996798320-------799999--------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 93110123333234878703699999999999999999999776410798444334689999999988990246755057
Q 001574 382 APEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGS 461 (1051)
Q Consensus 382 ~Pe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~~ 461 (1051)
+..
T Consensus 143 --------------------------------------------~~~--------------------------------- 145 (625)
T 2z86_A 143 --------------------------------------------EFE--------------------------------- 145 (625)
T ss_dssp --------------------------------------------TTT---------------------------------
T ss_pred --------------------------------------------HHH---------------------------------
T ss_conf --------------------------------------------856---------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHC-CCCCCC
Q ss_conf 8986655887781899945679999978751011588874025789989999549988892899999954111-877997
Q 001574 462 EGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLM-DPQLGK 540 (1051)
Q Consensus 462 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tn~p~il~lDcD~~~~n~~~Lr~amcf~~-Dp~~g~ 540 (1051)
.-+++.|+.+++ +.+.||+|+|.+++. +.|+||+.+|+|+. ..|++|.+.+-.|. +|
T Consensus 146 ---------~~~~i~~i~~~~----~~~g~~~a~N~g~~~----a~g~~v~~lD~D~~-~~~~~l~~~~~~~~~~~---- 203 (625)
T 2z86_A 146 ---------SLLNIKYVRQKD----YGYQLCAVRNLGLRA----AKYNYVAILDCDMA-PNPLWVQSYMELLAVDD---- 203 (625)
T ss_dssp ---------TTSCEEEEEECC----CSCCHHHHHHHHHHH----CCSSEEEEECTTEE-ECTTHHHHHHHHHHHCT----
T ss_pred ---------HCCCEEEEEECC----CCCCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHCCC----
T ss_conf ---------317829998678----774306899999986----88478999789877-79799999999985598----
Q ss_pred CEEEEECCCCCCCCC
Q ss_conf 289981372116999
Q 001574 541 KLCYVQFPQRFDGID 555 (1051)
Q Consensus 541 ~vafVQ~PQ~F~n~d 555 (1051)
+++.|+..+.+.+..
T Consensus 204 ~~~~~g~~~~~~~~~ 218 (625)
T 2z86_A 204 NVALIGPRKYIDTSK 218 (625)
T ss_dssp TEEEECCEEEECCTT
T ss_pred CEEEEEEEEECCCCC
T ss_conf 639998556516742
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=1.00 E-value=1 Score=119.32 Aligned_cols=122 Identities=17% Similarity=0.098 Sum_probs=93.5
Q ss_pred CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999998706998048999999799999999988397999983799906999424-3576678999953211233411577
Q 001574 301 EPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASML-LFDALSETAEFARRWVPFCKKYIIE 379 (1051)
Q Consensus 301 ~~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~YvsDDG~~~l-tf~al~E~~~fA~~WvpfCkk~~ie 379 (1051)
.+..+|.|.|.|+|+| |+...+..||.|+++.+||.....+.|.|||...- |.+.+.+
T Consensus 24 ~~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~------------------ 82 (472)
T 1xhb_A 24 YPDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLES------------------ 82 (472)
T ss_dssp CCSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHH------------------
T ss_pred CCCCCCCEEEEEEECC---CCHHHHHHHHHHHHHCCCHHHCEEEEEEECCCCCHHHHHHHHH------------------
T ss_conf 7867997599999678---8789999999999865957676079999779996789999999------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 89931101233332348787036999999999999999999997764107984443346899999999889902467550
Q 001574 380 PRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYL 459 (1051)
Q Consensus 380 pR~Pe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l 459 (1051)
+++
T Consensus 83 -------------------------------------------~~~---------------------------------- 85 (472)
T 1xhb_A 83 -------------------------------------------YVK---------------------------------- 85 (472)
T ss_dssp -------------------------------------------HHH----------------------------------
T ss_pred -------------------------------------------HHH----------------------------------
T ss_conf -------------------------------------------998----------------------------------
Q ss_pred CCCCCCCCCCCCCC-CEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHC-CCC
Q ss_conf 57898665588778-1899945679999978751011588874025789989999549988892899999954111-877
Q 001574 460 GSEGALDVEGKELP-RLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLM-DPQ 537 (1051)
Q Consensus 460 ~~~g~~d~~~~~lP-~lvYvsRekrpg~~hh~KAGalNallrvSav~tn~p~il~lDcD~~~~n~~~Lr~amcf~~-Dp~ 537 (1051)
.+| ++.++..+++. .+++|+|.+++. +.|+||+.+|+|.. ..|++|.+.+-.+. +|
T Consensus 86 -----------~~~~~v~vi~~~~n~-----G~~~a~N~g~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~~- 143 (472)
T 1xhb_A 86 -----------KLKVPVHVIRMEQRS-----GLIRARLKGAAV----SRGQVITFLDAHCE-CTAGWLEPLLARIKHDR- 143 (472)
T ss_dssp -----------SSSSCEEEEECSSCC-----CHHHHHHHHHHH----CCSSEEEEEESSEE-ECTTCHHHHHHHHHHCT-
T ss_pred -----------HCCCCEEEEECCCCC-----CHHHHHHHHHHH----CCCCEEEEECCCEE-ECCCHHHHHHHHHHHCC-
T ss_conf -----------779857999889878-----769999999986----15876999889857-67347999999998399-
Q ss_pred CCCCEEEE
Q ss_conf 99728998
Q 001574 538 LGKKLCYV 545 (1051)
Q Consensus 538 ~g~~vafV 545 (1051)
.++.+
T Consensus 144 ---~~~v~ 148 (472)
T 1xhb_A 144 ---RTVVC 148 (472)
T ss_dssp ---TEEEE
T ss_pred ---CEEEE
T ss_conf ---77999
No 5
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=1.00 E-value=1 Score=116.95 Aligned_cols=113 Identities=15% Similarity=0.087 Sum_probs=89.4
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99998706998048999999799999999988397999983799906999424357667899995321123341157789
Q 001574 302 PNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPR 381 (1051)
Q Consensus 302 ~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~YvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepR 381 (1051)
+..+|.|.|.|||+| |+...+..||.|+++..||.....+.|.|||...-|.+.
T Consensus 62 ~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~----------------------- 115 (501)
T 2ffu_A 62 RVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGA----------------------- 115 (501)
T ss_dssp CSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHH-----------------------
T ss_pred CCCCCCEEEEEEECC---CCHHHHHHHHHHHHHHCCHHHCEEEEEEECCCCCHHHHH-----------------------
T ss_conf 867997799999696---868999999999985086633514999978999567899-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 93110123333234878703699999999999999999999776410798444334689999999988990246755057
Q 001574 382 APEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGS 461 (1051)
Q Consensus 382 ~Pe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~~ 461 (1051)
+.
T Consensus 116 -----------------------------------------~~------------------------------------- 117 (501)
T 2ffu_A 116 -----------------------------------------LL------------------------------------- 117 (501)
T ss_dssp -----------------------------------------GG-------------------------------------
T ss_pred -----------------------------------------HH-------------------------------------
T ss_conf -----------------------------------------98-------------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 898665588778189994567999997875101158887402578998999954998889289999995411187
Q 001574 462 EGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDP 536 (1051)
Q Consensus 462 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tn~p~il~lDcD~~~~n~~~Lr~amcf~~Dp 536 (1051)
...|++.|+..+++ ..+++|+|.+++. +.|+||+.+|+|.. ..|++|.+.+-.+.+.
T Consensus 118 --------~~~~~v~vi~~~~n-----~G~~~A~N~G~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~ 174 (501)
T 2ffu_A 118 --------GKIEKVRVLRNDRR-----EGLMRSRVRGADA----AQAKVLTFLDSHCE-CNEHWLEPLLERVAED 174 (501)
T ss_dssp --------GGBTTEEEEECSSC-----CHHHHHHHHHHHH----CCSSEEEECCSSEE-ECTTCHHHHHHHHHHC
T ss_pred --------HCCCCEEEEECCCC-----CCHHHHHHHHHHH----CCCCEEEEECCCCC-CCCCHHHHHHHHHHHC
T ss_conf --------41898799989988-----6889999998986----68988999779830-6720799999999839
No 6
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=1.00 E-value=1 Score=116.61 Aligned_cols=116 Identities=16% Similarity=0.058 Sum_probs=90.4
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHH-HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999987069980489999997999999999883979999837999069994243-5766789999532112334115778
Q 001574 302 PNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLL-FDALSETAEFARRWVPFCKKYIIEP 380 (1051)
Q Consensus 302 ~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~YvsDDG~~~lt-f~al~E~~~fA~~WvpfCkk~~iep 380 (1051)
++.+|.|.|.|+|+| |+...+..||.|+++..||...+.+.|.|||...-| .+.+.
T Consensus 108 ~~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~-------------------- 164 (570)
T 2d7i_A 108 LETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLE-------------------- 164 (570)
T ss_dssp ESSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHH--------------------
T ss_pred CCCCCCEEEEEEECC---CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH--------------------
T ss_conf 888997599999789---878999999999983587457679999989998378899999--------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 99311012333323487870369999999999999999999977641079844433468999999998899024675505
Q 001574 381 RAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLG 460 (1051)
Q Consensus 381 R~Pe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~ 460 (1051)
.+++
T Consensus 165 -----------------------------------------~~~~----------------------------------- 168 (570)
T 2d7i_A 165 -----------------------------------------DYMA----------------------------------- 168 (570)
T ss_dssp -----------------------------------------HHHT-----------------------------------
T ss_pred -----------------------------------------HHHH-----------------------------------
T ss_conf -----------------------------------------9997-----------------------------------
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 7898665588778189994567999997875101158887402578998999954998889289999995411187
Q 001574 461 SEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDP 536 (1051)
Q Consensus 461 ~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tn~p~il~lDcD~~~~n~~~Lr~amcf~~Dp 536 (1051)
..|++.++..+++ ..+++|+|.+++. +.|+||+.||+|.. ..|++|.+.+-.+.+.
T Consensus 169 ----------~~~~v~vi~~~~n-----~G~~~A~N~G~~~----A~gd~i~fLD~D~~-~~p~~L~~ll~~l~~~ 224 (570)
T 2d7i_A 169 ----------LFPSVRILRTKKR-----EGLIRTRMLGASV----ATGDVITFLDSHCE-ANVNWLPPLLDRIARN 224 (570)
T ss_dssp ----------TSTTEEEEECSSC-----CCHHHHHHHHHHH----CCSSEEEECCSSEE-ECTTCSHHHHHHHHHC
T ss_pred ----------HCCEEEEEECCCC-----CCHHHHHHHHHHH----CCCCEEEEECCCCC-CCCCHHHHHHHHHHHC
T ss_conf ----------4780899989988-----7989999999986----67888999759852-2403899999999848
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=109.26 Aligned_cols=125 Identities=22% Similarity=0.281 Sum_probs=92.9
Q ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99987069980489999997999999999883979999837999069994243576678999953211233411577899
Q 001574 303 NRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRA 382 (1051)
Q Consensus 303 ~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~YvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepR~ 382 (1051)
...|.|.|.|+||| ++ ..+..++.|+++.+|| .+.++|.|||...-|.+.+.+
T Consensus 372 ~~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~--~~eiivvdd~S~d~t~~~~~~--------------------- 424 (625)
T 2z86_A 372 KRVPLVSIYIPAYN---CS-KYIVRCVESALNQTIT--DLEVCICDDGSTDDTLRILQE--------------------- 424 (625)
T ss_dssp CSSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCC--SEEEEEEEESCSSSHHHHHHH---------------------
T ss_pred CCCCEEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCHHHHHHHHH---------------------
T ss_conf 35971799995789---88-9999999999817699--828999989698649999999---------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 31101233332348787036999999999999999999997764107984443346899999999889902467550578
Q 001574 383 PEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSE 462 (1051)
Q Consensus 383 Pe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~~~ 462 (1051)
+. +
T Consensus 425 ----------------------------------------~~-~------------------------------------ 427 (625)
T 2z86_A 425 ----------------------------------------HY-A------------------------------------ 427 (625)
T ss_dssp ----------------------------------------HH-T------------------------------------
T ss_pred ----------------------------------------HH-H------------------------------------
T ss_conf ----------------------------------------88-5------------------------------------
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH-CCCCCCCC
Q ss_conf 98665588778189994567999997875101158887402578998999954998889289999995411-18779972
Q 001574 463 GALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGKK 541 (1051)
Q Consensus 463 g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tn~p~il~lDcD~~~~n~~~Lr~amcf~-~Dp~~g~~ 541 (1051)
..|++.++. ++ ...+++|+|.+++. ++|+||+.+|+|.+ ..|++|.+.+-.| .+| +
T Consensus 428 --------~~~~i~~~~-~~-----n~G~~~a~n~g~~~----a~g~~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~ 484 (625)
T 2z86_A 428 --------NHPRVRFIS-QK-----NKGIGSASNTAVRL----CRGFYIGQLDSDDF-LEPDAVELCLDEFRKDL----S 484 (625)
T ss_dssp --------TCTTEEEEE-EC-----CCCHHHHHHHHHHH----CCSSEEEECCTTCE-ECTTHHHHHHHHHHHCT----T
T ss_pred --------HCCCEEEEE-CC-----CCCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHHCC----C
T ss_conf --------499389991-79-----88989999999985----67787999889766-28359999999998479----8
Q ss_pred EEEEECCCCCCCC
Q ss_conf 8998137211699
Q 001574 542 LCYVQFPQRFDGI 554 (1051)
Q Consensus 542 vafVQ~PQ~F~n~ 554 (1051)
++.|.....+.+.
T Consensus 485 ~~~v~~~~~~~~~ 497 (625)
T 2z86_A 485 LACVYTTNRNIDR 497 (625)
T ss_dssp CSEEEEEEEEECT
T ss_pred EEEEEEEEEEECC
T ss_conf 1399820489879
No 8
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=1.00 E-value=1 Score=106.78 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=91.4
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 87069980489999997999999999883979999837999069994243576678999953211233411577899311
Q 001574 306 APVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEF 385 (1051)
Q Consensus 306 p~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~YvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepR~Pe~ 385 (1051)
|.|.|.|||+| ++ ..+..|+.|+++.+|| .+.++|.|||...-| .+..+
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t-------~~~~~------------------ 49 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFS--DFELFIMDDNSNEET-------LNVIR------------------ 49 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHH-------HHHHG------------------
T ss_pred CEEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCCHH-------HHHHH------------------
T ss_conf 95999997179---77-8999999999856278--649999978997108-------99999------------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 01233332348787036999999999999999999997764107984443346899999999889902467550578986
Q 001574 386 YFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGAL 465 (1051)
Q Consensus 386 YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~~ 465 (1051)
+.. .
T Consensus 50 ----------------------------------------~~~-------------------------------~----- 53 (255)
T 1qg8_A 50 ----------------------------------------PFL-------------------------------N----- 53 (255)
T ss_dssp ----------------------------------------GGG-------------------------------G-----
T ss_pred ----------------------------------------HHH-------------------------------H-----
T ss_conf ----------------------------------------986-------------------------------0-----
Q ss_pred CCCCCCCCCEEEEECCCCCCC----CCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHC-CCCCCC
Q ss_conf 655887781899945679999----978751011588874025789989999549988892899999954111-877997
Q 001574 466 DVEGKELPRLVYVSREKRPGY----NHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLM-DPQLGK 540 (1051)
Q Consensus 466 d~~~~~lP~lvYvsRekrpg~----~hh~KAGalNallrvSav~tn~p~il~lDcD~~~~n~~~Lr~amcf~~-Dp~~g~ 540 (1051)
-|++.|+..+.. +. ....+++|+|.+++. ++|+||+.+|+|.+ ..|++|.+.+-.|. +|
T Consensus 54 ------~~~i~~i~~~~~-~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~-~~~~~l~~~~~~~~~~~---- 117 (255)
T 1qg8_A 54 ------DNRVRFYQSDIS-GVKERTEKTRYAALINQAIEM----AEGEYITYATDDNI-YMPDRLLKMVRELDTHP---- 117 (255)
T ss_dssp ------STTEEEEECCCC-SHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEE-ECTTHHHHHHHHHHHCT----
T ss_pred ------CCCEEEEECCCC-CCCCCCCCCCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHHCC----
T ss_conf ------698899964653-332221466789999999987----58888999689876-28279999999998589----
Q ss_pred CEEEEECCCCCC
Q ss_conf 289981372116
Q 001574 541 KLCYVQFPQRFD 552 (1051)
Q Consensus 541 ~vafVQ~PQ~F~ 552 (1051)
+++.|.....+.
T Consensus 118 ~~~~v~~~~~~~ 129 (255)
T 1qg8_A 118 EKAVIYSASKTY 129 (255)
T ss_dssp TCCEEEEEEEEE
T ss_pred CCEEEEECEEEE
T ss_conf 905998432899
No 9
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=1.00 E-value=1 Score=100.45 Aligned_cols=110 Identities=14% Similarity=0.154 Sum_probs=84.4
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99870699804899999979999999998839799998379990699942435766789999532112334115778993
Q 001574 304 RLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAP 383 (1051)
Q Consensus 304 ~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~YvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepR~P 383 (1051)
..|.|.|.||||| ++ ..+..++.|+++.+|| .+.+.|.|||...-|.+.+.+
T Consensus 3 ~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~~---------------------- 54 (240)
T 3bcv_A 3 LIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICDD---------------------- 54 (240)
T ss_dssp CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHHH----------------------
T ss_pred CCCCEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCCCHHHHHHH----------------------
T ss_conf 9984899996689---77-8999999999957689--869999989998678999999----------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 11012333323487870369999999999999999999977641079844433468999999998899024675505789
Q 001574 384 EFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEG 463 (1051)
Q Consensus 384 e~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g 463 (1051)
+.++
T Consensus 55 ---------------------------------------~~~~------------------------------------- 58 (240)
T 3bcv_A 55 ---------------------------------------YAAQ------------------------------------- 58 (240)
T ss_dssp ---------------------------------------HHHH-------------------------------------
T ss_pred ---------------------------------------HHHH-------------------------------------
T ss_conf ---------------------------------------9965-------------------------------------
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 8665588778189994567999997875101158887402578998999954998889289999995411187
Q 001574 464 ALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDP 536 (1051)
Q Consensus 464 ~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tn~p~il~lDcD~~~~n~~~Lr~amcf~~Dp 536 (1051)
.|++.++..+ ...+++|.|.+++. ++|+||+.+|+|.+ ..|++|.+.+-.+.++
T Consensus 59 --------~~~i~~i~~~------n~G~~~a~N~g~~~----a~g~~i~~lD~Dd~-~~~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 59 --------YPNIKVIHKK------NAGLGMACNSGLDV----ATGEYVAFCDSDDY-VDSDMYMTMYNVAQKY 112 (240)
T ss_dssp --------CSSEEEEECC------CCCHHHHHHHHHHH----CCSSEEEECCTTCC-CCTTHHHHHHHHHHHH
T ss_pred --------CCCEEEEECC------CCCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHHC
T ss_conf --------8978999889------99949999999997----68999999879875-8889999999999846
No 10
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=1.00 E-value=1 Score=100.37 Aligned_cols=118 Identities=13% Similarity=0.141 Sum_probs=85.4
Q ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 98706998048999999799999999988397999983799906999424357667899995321123341157789931
Q 001574 305 LAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPE 384 (1051)
Q Consensus 305 lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~YvsDDG~~~ltf~al~E~~~fA~~WvpfCkk~~iepR~Pe 384 (1051)
.|.|.|.|||+| ++ ..+..++.|+++.+|| .+.+.|.|||..+-|.+.+.+.+
T Consensus 1 Mp~vSVIIp~yN---~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~~~--------------------- 53 (729)
T 3l7i_A 1 MNKLTIIVTYYN---AE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDEAI--------------------- 53 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCCCHHHHHHHHH---------------------
T ss_conf 966999997678---78-9999999999827789--86999997899875799999999---------------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 10123333234878703699999999999999999999776410798444334689999999988990246755057898
Q 001574 385 FYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGA 464 (1051)
Q Consensus 385 ~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~ 464 (1051)
++ ++
T Consensus 54 ----------------------------------------~~------------------------~~------------ 57 (729)
T 3l7i_A 54 ----------------------------------------KD------------------------YD------------ 57 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------HH------------------------CC------------
T ss_conf ----------------------------------------74------------------------79------------
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 66558877818999456799999787510115888740257899899995499888928999999541118779972899
Q 001574 465 LDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCY 544 (1051)
Q Consensus 465 ~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tn~p~il~lDcD~~~~n~~~Lr~amcf~~Dp~~g~~vaf 544 (1051)
+++.|+..++ ....++|.|.+++ .+.|+||+.+|+|.+ ..|++|.+.+-.+.++ ++.+
T Consensus 58 --------~~i~~i~~~~-----n~G~~~arN~gi~----~A~gdyI~flD~Dd~-~~p~~l~~l~~~l~~~----d~v~ 115 (729)
T 3l7i_A 58 --------KNIRFIDLDE-----NSGHAHARNIALE----EVETPYFMFLDADDE-LASYAITFYLEKFNNT----DGLI 115 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------CCEEEEECCC-----CCCHHHHHHHHHH----HCCCCEEEEECCCCC-CCHHHHHHHHHHHCCC----CEEE
T ss_conf --------9889998888-----7787999999998----666998999889877-7846999999982379----9899
Q ss_pred EEC
Q ss_conf 813
Q 001574 545 VQF 547 (1051)
Q Consensus 545 VQ~ 547 (1051)
...
T Consensus 116 ~~~ 118 (729)
T 3l7i_A 116 API 118 (729)
T ss_dssp ---
T ss_pred EEE
T ss_conf 866
Done!