Query 001576
Match_columns 1050
No_of_seqs 411 out of 1820
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 04:14:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02400 cellulose synthase 100.0 2E-314 4E-319 2781.3 80.8 1026 4-1050 2-1085(1085)
2 PLN02436 cellulose synthase A 100.0 4E-314 9E-319 2767.5 79.5 1029 4-1050 2-1093(1094)
3 PLN02915 cellulose synthase A 100.0 3E-305 7E-310 2694.9 79.5 1017 30-1050 9-1044(1044)
4 PLN02638 cellulose synthase A 100.0 1E-302 2E-307 2678.3 80.4 1010 23-1050 2-1079(1079)
5 PLN02189 cellulose synthase 100.0 4E-298 1E-302 2632.3 81.8 999 4-1050 2-1040(1040)
6 PLN02195 cellulose synthase A 100.0 7E-286 2E-290 2516.2 79.5 968 32-1050 2-977 (977)
7 PLN02248 cellulose synthase-li 100.0 1E-254 2E-259 2258.9 71.8 948 5-1037 88-1125(1135)
8 PF03552 Cellulose_synt: Cellu 100.0 4E-221 9E-226 1922.5 46.6 718 307-1044 1-720 (720)
9 PLN02190 cellulose synthase-li 100.0 5E-203 1E-207 1773.0 58.4 726 208-1029 6-756 (756)
10 PLN02893 Cellulose synthase-li 100.0 1E-194 3E-199 1710.1 63.7 706 208-1027 9-728 (734)
11 TIGR03030 CelA cellulose synth 100.0 2E-65 4.4E-70 622.7 47.6 491 228-1003 57-561 (713)
12 PRK11498 bcsA cellulose syntha 100.0 1.1E-65 2.5E-70 626.1 45.0 472 230-1002 189-673 (852)
13 PF14569 zf-UDP: Zinc-binding 100.0 3.5E-43 7.6E-48 309.0 4.3 80 28-107 1-80 (80)
14 PRK05454 glucosyltransferase M 100.0 9.7E-35 2.1E-39 351.0 45.8 359 227-847 41-420 (691)
15 cd04191 Glucan_BSP_ModH Glucan 100.0 1.1E-32 2.4E-37 298.8 21.4 182 472-799 67-253 (254)
16 COG1215 Glycosyltransferases, 100.0 1.3E-29 2.8E-34 289.1 28.2 233 304-803 53-290 (439)
17 PRK14583 hmsR N-glycosyltransf 100.0 5E-28 1.1E-32 280.8 31.7 231 302-804 72-307 (444)
18 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 7.1E-27 1.5E-31 271.1 31.5 124 694-855 217-341 (439)
19 PRK11204 N-glycosyltransferase 100.0 2.3E-26 4.9E-31 263.5 31.8 235 302-804 51-286 (420)
20 PRK14716 bacteriophage N4 adso 99.9 1.3E-24 2.8E-29 255.5 30.0 266 303-830 64-356 (504)
21 cd06421 CESA_CelA_like CESA_Ce 99.9 2.7E-24 5.9E-29 223.5 19.4 229 305-801 1-234 (234)
22 PRK11234 nfrB bacteriophage N4 99.9 1.1E-23 2.5E-28 256.4 26.5 271 302-834 60-365 (727)
23 cd06437 CESA_CaSu_A2 Cellulose 99.9 6.4E-24 1.4E-28 223.0 20.6 227 305-797 1-232 (232)
24 cd06427 CESA_like_2 CESA_like_ 99.9 1.6E-22 3.4E-27 214.6 19.9 233 305-803 1-236 (241)
25 cd06435 CESA_NdvC_like NdvC_li 99.9 3.8E-22 8.1E-27 209.2 22.1 173 474-803 58-234 (236)
26 PF13641 Glyco_tranf_2_3: Glyc 99.9 1.2E-22 2.7E-27 211.4 5.8 224 305-796 1-228 (228)
27 PRK15489 nfrB bacteriophage N4 99.8 8.5E-19 1.9E-23 212.2 29.3 172 487-802 139-342 (703)
28 TIGR03472 HpnI hopanoid biosyn 99.8 1.2E-18 2.5E-23 198.5 24.7 234 303-797 39-272 (373)
29 cd04190 Chitin_synth_C C-termi 99.8 4.1E-20 8.9E-25 197.9 11.4 52 746-799 190-243 (244)
30 cd04192 GT_2_like_e Subfamily 99.8 1.4E-18 3E-23 179.5 16.6 122 309-551 1-122 (229)
31 cd02520 Glucosylceramide_synth 99.8 4E-18 8.7E-23 175.6 16.2 48 747-796 148-195 (196)
32 cd06434 GT2_HAS Hyaluronan syn 99.7 5.7E-17 1.2E-21 169.4 17.9 59 487-554 62-120 (235)
33 cd06439 CESA_like_1 CESA_like_ 99.7 1.4E-16 3.1E-21 168.7 18.6 127 301-553 25-151 (251)
34 TIGR03469 HonB hopene-associat 99.7 1.3E-15 2.8E-20 174.4 24.8 133 301-547 36-169 (384)
35 cd02525 Succinoglycan_BP_ExoA 99.6 1.2E-14 2.6E-19 152.1 19.0 76 694-803 158-233 (249)
36 PF13632 Glyco_trans_2_3: Glyc 99.6 3.1E-15 6.7E-20 153.1 14.1 50 746-797 94-143 (193)
37 COG2943 MdoH Membrane glycosyl 99.6 1.6E-12 3.6E-17 149.2 36.7 227 474-849 214-441 (736)
38 cd06436 GlcNAc-1-P_transferase 99.4 8.5E-13 1.8E-17 136.1 13.3 115 473-594 51-175 (191)
39 cd06438 EpsO_like EpsO protein 99.3 4.2E-12 9.1E-17 129.4 11.4 62 487-554 61-123 (183)
40 cd04184 GT2_RfbC_Mx_like Myxoc 99.3 4.8E-11 1E-15 121.9 16.1 121 305-549 1-122 (202)
41 cd04195 GT2_AmsE_like GT2_AmsE 99.2 1.9E-10 4.1E-15 117.6 15.0 64 474-551 57-121 (201)
42 PF14570 zf-RING_4: RING/Ubox 99.1 1.6E-11 3.5E-16 101.2 2.7 48 39-89 1-48 (48)
43 PF13506 Glyco_transf_21: Glyc 99.1 3.8E-10 8.2E-15 116.8 11.4 60 487-554 15-74 (175)
44 cd06433 GT_2_WfgS_like WfgS an 99.1 1.5E-09 3.2E-14 109.3 14.4 54 489-551 62-116 (202)
45 cd02522 GT_2_like_a GT_2_like_ 99.0 6.7E-09 1.4E-13 107.6 16.7 40 307-352 1-40 (221)
46 cd06420 GT2_Chondriotin_Pol_N 99.0 9.7E-09 2.1E-13 103.2 15.5 42 488-535 65-106 (182)
47 cd02510 pp-GalNAc-T pp-GalNAc- 99.0 1.7E-08 3.6E-13 111.4 18.5 109 309-534 2-110 (299)
48 cd04196 GT_2_like_d Subfamily 99.0 7.2E-09 1.6E-13 106.2 14.1 64 474-551 56-120 (214)
49 cd04186 GT_2_like_c Subfamily 98.9 1.8E-08 3.9E-13 98.5 14.2 52 488-547 60-111 (166)
50 PF03142 Chitin_synth_2: Chiti 98.9 2.6E-07 5.7E-12 110.0 25.1 54 747-802 324-379 (527)
51 PLN02726 dolichyl-phosphate be 98.9 5.7E-08 1.2E-12 104.0 16.8 59 474-546 70-128 (243)
52 cd04185 GT_2_like_b Subfamily 98.9 5.8E-08 1.3E-12 99.8 16.0 65 474-550 53-117 (202)
53 cd02526 GT2_RfbF_like RfbF is 98.9 3.1E-08 6.7E-13 103.9 14.0 49 474-529 49-97 (237)
54 cd06913 beta3GnTL1_like Beta 1 98.8 4.4E-08 9.6E-13 102.4 14.8 41 309-354 1-41 (219)
55 PF00535 Glycos_transf_2: Glyc 98.8 5.9E-09 1.3E-13 101.0 6.6 110 473-594 54-165 (169)
56 cd06442 DPM1_like DPM1_like re 98.8 1.1E-07 2.4E-12 98.8 14.0 60 474-547 55-114 (224)
57 cd06423 CESA_like CESA_like is 98.7 8E-08 1.7E-12 92.8 10.7 108 474-595 55-167 (180)
58 cd04188 DPG_synthase DPG_synth 98.5 1E-06 2.2E-11 91.7 13.1 52 489-549 69-120 (211)
59 cd04179 DPM_DPG-synthase_like 98.5 6.4E-07 1.4E-11 90.1 11.0 65 474-552 56-120 (185)
60 PRK10073 putative glycosyl tra 98.4 3.3E-06 7.3E-11 95.6 15.1 110 303-535 4-113 (328)
61 PRK10018 putative glycosyl tra 98.4 5.1E-06 1.1E-10 92.4 16.2 52 472-533 60-111 (279)
62 TIGR01556 rhamnosyltran L-rham 98.4 4.8E-06 1E-10 91.0 15.2 68 473-550 46-113 (281)
63 PRK10063 putative glycosyl tra 98.3 1.3E-05 2.8E-10 87.3 15.1 45 305-353 1-46 (248)
64 cd04187 DPM1_like_bac Bacteria 98.3 7.9E-06 1.7E-10 82.8 12.1 104 473-595 56-160 (181)
65 cd00761 Glyco_tranf_GTA_type G 98.2 2.8E-05 6E-10 73.3 12.6 52 487-547 62-114 (156)
66 KOG2571 Chitin synthase/hyalur 98.2 4E-05 8.8E-10 95.0 17.3 48 747-796 549-596 (862)
67 PTZ00260 dolichyl-phosphate be 98.1 5.1E-05 1.1E-09 86.4 16.1 41 489-534 149-189 (333)
68 PF10111 Glyco_tranf_2_2: Glyc 98.1 7.8E-05 1.7E-09 82.5 15.5 61 488-554 74-134 (281)
69 PRK13915 putative glucosyl-3-p 97.9 4.7E-05 1E-09 85.8 10.7 51 488-546 101-152 (306)
70 COG1216 Predicted glycosyltran 97.9 0.00026 5.6E-09 79.2 16.4 70 472-552 56-126 (305)
71 PRK10714 undecaprenyl phosphat 97.2 0.0021 4.6E-08 73.1 11.4 41 488-533 76-116 (325)
72 KOG2547 Ceramide glucosyltrans 97.0 0.014 3E-07 67.0 14.7 166 475-794 146-313 (431)
73 COG0463 WcaA Glycosyltransfera 96.8 0.007 1.5E-07 57.9 9.7 43 304-352 2-44 (291)
74 COG5175 MOT2 Transcriptional r 96.7 0.00069 1.5E-08 75.7 1.7 48 38-88 16-63 (480)
75 cd02511 Beta4Glucosyltransfera 96.4 0.019 4.1E-07 61.4 10.6 42 489-535 58-99 (229)
76 PF14446 Prok-RING_1: Prokaryo 95.5 0.0089 1.9E-07 51.2 2.4 46 35-88 4-51 (54)
77 TIGR00570 cdk7 CDK-activating 95.3 0.018 3.9E-07 65.1 4.5 59 35-95 2-60 (309)
78 cd02514 GT13_GLCNAC-TI GT13_GL 94.3 0.45 9.7E-06 55.0 12.7 41 308-352 3-43 (334)
79 PF02364 Glucan_synthase: 1,3- 90.8 2.5 5.5E-05 53.7 13.2 103 688-825 379-482 (817)
80 PF05290 Baculo_IE-1: Baculovi 89.3 0.23 5E-06 49.9 2.2 51 37-91 81-134 (140)
81 cd00162 RING RING-finger (Real 87.9 0.48 1E-05 36.8 2.8 44 38-87 1-44 (45)
82 smart00504 Ubox Modified RING 82.3 1.3 2.8E-05 37.9 3.1 44 38-89 3-46 (63)
83 KOG2978 Dolichol-phosphate man 79.5 11 0.00024 40.6 9.2 52 473-534 64-115 (238)
84 PHA02929 N1R/p28-like protein; 75.5 3 6.6E-05 46.1 4.0 56 33-89 171-227 (238)
85 KOG2932 E3 ubiquitin ligase in 73.6 1.7 3.7E-05 49.2 1.5 44 49-92 84-137 (389)
86 KOG2068 MOT2 transcription fac 73.0 2.9 6.2E-05 48.0 3.2 52 36-91 249-300 (327)
87 PLN03208 E3 ubiquitin-protein 71.1 3.9 8.4E-05 44.0 3.4 63 21-90 2-80 (193)
88 PF14447 Prok-RING_4: Prokaryo 70.9 2.2 4.7E-05 37.1 1.2 47 35-91 6-52 (55)
89 PRK14559 putative protein seri 70.5 2.4 5.2E-05 53.1 2.0 23 66-89 30-52 (645)
90 PF13639 zf-RING_2: Ring finge 68.4 3.3 7.2E-05 33.4 1.8 43 38-85 2-44 (44)
91 smart00659 RPOLCX RNA polymera 66.4 3.6 7.7E-05 34.2 1.6 26 38-65 4-29 (44)
92 PHA02825 LAP/PHD finger-like p 65.6 4.8 0.0001 42.0 2.7 51 35-91 7-61 (162)
93 KOG2977 Glycosyltransferase [G 65.6 87 0.0019 36.0 12.5 41 489-533 144-186 (323)
94 PF03604 DNA_RNApol_7kD: DNA d 65.2 4.7 0.0001 31.4 1.9 26 38-65 2-27 (32)
95 PF02318 FYVE_2: FYVE-type zin 65.2 1.5 3.3E-05 43.2 -0.9 48 34-84 52-100 (118)
96 PHA02862 5L protein; Provision 64.5 4.1 9E-05 41.8 1.9 49 36-90 2-54 (156)
97 KOG0006 E3 ubiquitin-protein l 63.2 5.8 0.00013 45.2 2.9 40 31-71 310-352 (446)
98 KOG3800 Predicted E3 ubiquitin 61.8 5.9 0.00013 44.8 2.7 53 37-91 1-53 (300)
99 KOG1734 Predicted RING-contain 61.3 3.4 7.3E-05 46.2 0.7 59 28-89 216-281 (328)
100 PF03966 Trm112p: Trm112p-like 61.3 2.3 4.9E-05 38.0 -0.5 25 67-91 42-66 (68)
101 smart00184 RING Ring finger. E 60.9 8 0.00017 28.7 2.6 39 39-84 1-39 (39)
102 PF14471 DUF4428: Domain of un 56.6 6.6 0.00014 33.6 1.5 28 38-71 1-28 (51)
103 KOG0823 Predicted E3 ubiquitin 56.0 12 0.00025 41.3 3.7 50 34-91 45-97 (230)
104 PF13923 zf-C3HC4_2: Zinc fing 54.9 11 0.00025 29.7 2.6 39 39-84 1-39 (39)
105 PF13920 zf-C3HC4_3: Zinc fing 54.6 12 0.00026 31.1 2.7 46 37-90 3-49 (50)
106 PF00097 zf-C3HC4: Zinc finger 53.5 10 0.00023 29.8 2.1 40 39-84 1-41 (41)
107 COG0068 HypF Hydrogenase matur 53.2 9.6 0.00021 47.9 2.8 56 34-89 99-184 (750)
108 PRK00420 hypothetical protein; 51.9 6.9 0.00015 38.7 1.1 29 56-90 24-52 (112)
109 smart00291 ZnF_ZZ Zinc-binding 51.1 16 0.00035 30.0 2.9 38 35-77 3-41 (44)
110 COG4858 Uncharacterized membra 49.6 88 0.0019 33.9 8.7 60 952-1011 99-161 (226)
111 PRK15103 paraquat-inducible me 49.4 13 0.00028 44.5 3.0 30 53-91 219-248 (419)
112 smart00249 PHD PHD zinc finger 48.8 12 0.00027 29.3 1.9 43 38-84 1-47 (47)
113 PRK12495 hypothetical protein; 48.8 10 0.00023 41.4 1.9 29 55-90 42-70 (226)
114 COG5114 Histone acetyltransfer 47.8 6.4 0.00014 44.9 0.2 36 38-77 7-43 (432)
115 PHA02926 zinc finger-like prot 46.4 20 0.00044 39.4 3.6 62 33-94 167-235 (242)
116 TIGR00155 pqiA_fam integral me 45.5 13 0.00029 44.2 2.3 30 54-91 214-243 (403)
117 PF07282 OrfB_Zn_ribbon: Putat 44.8 16 0.00035 32.3 2.2 33 35-68 27-59 (69)
118 KOG3737 Predicted polypeptide 44.5 1.1E+02 0.0023 36.6 9.1 48 300-350 150-197 (603)
119 PF06906 DUF1272: Protein of u 43.8 25 0.00054 30.9 3.0 47 38-90 7-53 (57)
120 KOG2068 MOT2 transcription fac 43.6 10 0.00022 43.7 1.0 29 62-90 1-31 (327)
121 PRK04023 DNA polymerase II lar 43.2 17 0.00036 47.4 2.8 47 34-90 624-675 (1121)
122 PRK12380 hydrogenase nickel in 41.8 11 0.00023 37.2 0.6 26 56-88 71-96 (113)
123 PF13712 Glyco_tranf_2_5: Glyc 41.1 30 0.00066 37.5 4.1 49 488-544 40-89 (217)
124 PRK00398 rpoP DNA-directed RNA 40.1 18 0.00038 29.9 1.6 27 38-65 5-31 (46)
125 PF07851 TMPIT: TMPIT-like pro 39.2 4.5E+02 0.0097 31.0 13.1 18 882-899 173-190 (330)
126 TIGR02443 conserved hypothetic 39.2 20 0.00044 31.7 1.9 30 35-64 8-40 (59)
127 PRK07220 DNA topoisomerase I; 39.1 18 0.00039 46.3 2.2 48 37-86 590-643 (740)
128 cd02335 ZZ_ADA2 Zinc finger, Z 38.6 25 0.00054 29.6 2.3 32 38-73 2-34 (49)
129 PRK11827 hypothetical protein; 38.1 22 0.00047 31.7 1.9 32 64-95 12-43 (60)
130 PRK14503 mannosyl-3-phosphogly 37.7 67 0.0015 37.9 6.2 40 487-529 142-181 (393)
131 cd00350 rubredoxin_like Rubred 37.7 15 0.00032 28.5 0.7 20 71-90 10-29 (33)
132 KOG2824 Glutaredoxin-related p 37.6 21 0.00045 40.4 2.1 22 33-62 226-247 (281)
133 TIGR00599 rad18 DNA repair pro 36.5 29 0.00064 41.3 3.3 53 29-89 18-71 (397)
134 KOG0457 Histone acetyltransfer 36.5 18 0.0004 43.0 1.6 51 36-93 14-65 (438)
135 COG0551 TopA Zn-finger domain 36.0 27 0.00058 35.3 2.5 50 33-86 14-68 (140)
136 PRK00564 hypA hydrogenase nick 35.5 16 0.00034 36.3 0.7 13 79-91 89-101 (117)
137 COG1996 RPC10 DNA-directed RNA 35.3 19 0.0004 30.9 1.0 28 37-65 7-34 (49)
138 KOG0311 Predicted E3 ubiquitin 35.2 5.7 0.00012 46.0 -2.7 45 38-88 45-89 (381)
139 PF14634 zf-RING_5: zinc-RING 34.8 38 0.00082 27.5 2.7 43 39-86 2-44 (44)
140 PF07649 C1_3: C1-like domain; 34.8 21 0.00046 26.8 1.2 28 38-69 2-29 (30)
141 TIGR01562 FdhE formate dehydro 34.5 48 0.001 38.3 4.4 44 35-87 183-233 (305)
142 COG4818 Predicted membrane pro 33.9 3.8E+02 0.0082 26.3 9.4 26 900-925 5-30 (105)
143 KOG1941 Acetylcholine receptor 33.7 16 0.00035 42.8 0.6 69 35-106 364-438 (518)
144 PF01155 HypA: Hydrogenase exp 33.4 9.9 0.00021 37.4 -1.1 29 56-91 71-99 (113)
145 KOG3736 Polypeptide N-acetylga 33.1 48 0.001 41.3 4.4 49 301-352 138-186 (578)
146 PRK11595 DNA utilization prote 32.4 30 0.00065 37.8 2.3 40 36-88 5-44 (227)
147 PRK03681 hypA hydrogenase nick 32.4 18 0.0004 35.7 0.6 28 56-90 71-99 (114)
148 TIGR00100 hypA hydrogenase nic 32.2 21 0.00045 35.3 1.0 29 56-91 71-99 (115)
149 PF04564 U-box: U-box domain; 31.3 44 0.00095 30.2 2.8 45 38-89 6-50 (73)
150 cd02249 ZZ Zinc finger, ZZ typ 31.2 35 0.00077 28.2 2.0 31 38-73 2-33 (46)
151 PF11238 DUF3039: Protein of u 30.9 14 0.0003 32.6 -0.5 13 78-90 44-56 (58)
152 PRK14973 DNA topoisomerase I; 30.5 37 0.0008 44.7 3.0 48 37-87 589-644 (936)
153 PF02709 Glyco_transf_7C: N-te 30.0 27 0.00059 32.1 1.3 49 691-769 18-66 (78)
154 TIGR00143 hypF [NiFe] hydrogen 29.9 22 0.00048 45.3 0.9 72 18-90 47-152 (711)
155 PF09484 Cas_TM1802: CRISPR-as 29.7 26 0.00056 43.6 1.4 45 32-77 194-254 (593)
156 PF00628 PHD: PHD-finger; Int 29.6 38 0.00081 28.0 1.9 44 38-85 1-49 (51)
157 COG1813 Predicted transcriptio 29.4 35 0.00076 36.0 2.1 35 39-77 6-40 (165)
158 PRK07219 DNA topoisomerase I; 29.3 33 0.00071 44.5 2.3 53 36-91 688-746 (822)
159 TIGR02921 PEP_integral PEP-CTE 29.2 1.3E+03 0.029 29.5 15.3 27 829-855 45-71 (952)
160 cd03031 GRX_GRX_like Glutaredo 29.1 29 0.00063 35.8 1.5 43 35-86 98-141 (147)
161 COG2888 Predicted Zn-ribbon RN 28.5 51 0.0011 29.4 2.6 48 36-85 9-57 (61)
162 PRK14890 putative Zn-ribbon RN 28.5 67 0.0015 28.6 3.3 49 36-86 7-56 (59)
163 PF13704 Glyco_tranf_2_4: Glyc 28.1 1.7E+02 0.0037 26.9 6.3 26 491-519 59-84 (97)
164 cd02336 ZZ_RSC8 Zinc finger, Z 27.3 48 0.001 27.8 2.1 35 38-77 2-37 (45)
165 PF00265 TK: Thymidine kinase; 27.2 23 0.00049 37.5 0.3 34 37-70 138-176 (176)
166 KOG0916 1,3-beta-glucan syntha 27.1 1.1E+03 0.023 33.1 14.8 108 691-836 1146-1258(1679)
167 COG4707 Uncharacterized protei 26.4 23 0.00049 34.2 0.1 44 409-463 20-70 (107)
168 PF03884 DUF329: Domain of unk 26.2 40 0.00088 29.7 1.6 32 75-106 15-52 (57)
169 PRK14873 primosome assembly pr 26.1 45 0.00097 42.4 2.6 11 78-88 422-432 (665)
170 PF13896 Glyco_transf_49: Glyc 26.1 65 0.0014 37.1 3.7 41 504-545 125-165 (317)
171 KOG3507 DNA-directed RNA polym 25.6 29 0.00062 30.8 0.6 28 36-65 20-47 (62)
172 KOG3088 Secretory carrier memb 25.5 8.6E+02 0.019 28.3 12.0 67 785-851 81-159 (313)
173 PF09526 DUF2387: Probable met 25.2 47 0.001 30.5 1.9 30 35-64 7-39 (71)
174 PRK03824 hypA hydrogenase nick 24.7 29 0.00062 35.3 0.5 11 77-87 106-116 (135)
175 PRK04296 thymidine kinase; Pro 24.4 37 0.0008 35.9 1.3 35 37-71 141-186 (190)
176 PF13248 zf-ribbon_3: zinc-rib 24.2 26 0.00057 25.7 0.1 21 66-87 5-25 (26)
177 TIGR00595 priA primosomal prot 24.2 40 0.00086 41.3 1.6 49 48-96 205-258 (505)
178 PF13240 zinc_ribbon_2: zinc-r 24.2 26 0.00057 25.3 0.1 13 75-87 10-22 (23)
179 PRK12438 hypothetical protein; 24.1 1.4E+03 0.03 31.0 15.1 46 983-1028 259-304 (991)
180 TIGR03830 CxxCG_CxxCG_HTH puta 24.1 35 0.00075 33.3 0.9 41 39-89 1-42 (127)
181 PF06570 DUF1129: Protein of u 24.1 4E+02 0.0087 28.7 9.1 25 949-973 81-105 (206)
182 TIGR01206 lysW lysine biosynth 24.0 51 0.0011 28.7 1.8 12 38-49 4-15 (54)
183 PF04641 Rtf2: Rtf2 RING-finge 23.8 64 0.0014 36.1 3.0 52 34-91 111-163 (260)
184 PF00643 zf-B_box: B-box zinc 23.8 49 0.0011 26.3 1.6 31 36-73 3-33 (42)
185 COG3813 Uncharacterized protei 23.7 67 0.0014 29.7 2.5 48 38-91 7-54 (84)
186 COG2191 Formylmethanofuran deh 23.6 33 0.00073 37.3 0.7 26 36-71 172-201 (206)
187 smart00744 RINGv The RING-vari 23.5 94 0.002 26.3 3.2 45 38-85 1-49 (49)
188 PF15050 SCIMP: SCIMP protein 23.5 85 0.0018 31.6 3.4 40 890-930 2-46 (133)
189 PF09623 Cas_NE0113: CRISPR-as 23.1 5.1E+02 0.011 28.8 9.6 60 309-377 4-63 (224)
190 PRK08359 transcription factor; 23.1 33 0.00071 36.6 0.5 31 36-74 6-42 (176)
191 PRK14714 DNA polymerase II lar 22.9 48 0.0011 44.5 2.1 48 37-91 668-722 (1337)
192 COG4391 Uncharacterized protei 22.6 35 0.00075 30.5 0.5 17 74-90 44-60 (62)
193 TIGR00155 pqiA_fam integral me 22.5 56 0.0012 39.0 2.4 35 54-92 12-47 (403)
194 PRK06319 DNA topoisomerase I/S 22.4 56 0.0012 42.7 2.5 54 35-91 591-658 (860)
195 cd00065 FYVE FYVE domain; Zinc 22.2 48 0.001 28.0 1.3 38 36-76 2-39 (57)
196 KOG3533 Inositol 1,4,5-trispho 21.8 1.6E+03 0.034 31.6 14.4 16 341-356 1779-1794(2706)
197 PTZ00293 thymidine kinase; Pro 21.7 43 0.00094 36.7 1.1 35 37-71 138-177 (211)
198 KOG2177 Predicted E3 ubiquitin 21.4 47 0.001 35.4 1.3 44 35-86 12-55 (386)
199 PF12773 DZR: Double zinc ribb 21.1 70 0.0015 26.5 2.0 12 36-47 12-23 (50)
200 cd00729 rubredoxin_SM Rubredox 21.0 35 0.00077 26.8 0.2 11 78-88 18-28 (34)
201 KOG1609 Protein involved in mR 20.4 64 0.0014 36.1 2.2 58 36-94 78-139 (323)
202 PRK15103 paraquat-inducible me 20.3 52 0.0011 39.5 1.5 33 56-91 11-43 (419)
203 KOG2568 Predicted membrane pro 20.3 1.8E+03 0.038 27.8 14.3 72 955-1026 313-400 (518)
204 TIGR02460 osmo_MPGsynth mannos 20.0 2.3E+02 0.0049 33.6 6.4 40 487-529 141-180 (381)
No 1
>PLN02400 cellulose synthase
Probab=100.00 E-value=2e-314 Score=2781.25 Aligned_cols=1026 Identities=68% Similarity=1.245 Sum_probs=940.7
Q ss_pred CCCccccccccCCceEEEeccCCC--CCCCCCCCCCcccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCC
Q 001576 4 NPMGSFVAGSHSRNELHVMHANEE--RPPTRQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCC 81 (1050)
Q Consensus 4 ~~~~~~~~g~~~r~~~~~~~~~~~--~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~C 81 (1050)
|+++|||||||||||||+|++|++ +||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|
T Consensus 2 ~~~~glvaGSh~Rnelv~i~~d~~~g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~C 81 (1085)
T PLN02400 2 EANAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCC 81 (1085)
T ss_pred CCccccccccccccceeeecccccccCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccC
Confidence 689999999999999999998854 589999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccCccccCCCCCCCCCccchhhhccCCCCCCCCccccccccCCCC-----CC-CCCCcccCCCC-------
Q 001576 82 PGCNTRYKRHKGCARVAGDEEDNFDDDFEDEFKNHYDNQDHDQHHHVTTTRSEN-----GD-NNQNQFLNGPG------- 148 (1050)
Q Consensus 82 PqCkt~Ykr~kgsprv~gd~ee~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~------- 148 (1050)
||||||||||||||||+|||||||+||+||||++++.|++..++ +. +++.+ ++ ++++|++++++
T Consensus 82 PQCkTrYkR~KgsprV~GDeeedd~DDlenEf~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~p~lt~g~~~s~ei~ 158 (1085)
T PLN02400 82 PQCKTRYRRHKGSPRVEGDEDEDDVDDLENEFNYAQGNGKARHQ--WQ-GEDIELSSSSRHESQPIPLLTHGQPVSGEIP 158 (1085)
T ss_pred cccCCccccccCCCCCCcccccccchhhhhhhcccccccccccc--cc-ccCccccCcccccCCCCccccCCcccCCCCC
Confidence 99999999999999999999999999999999997554432111 11 11111 00 24566776643
Q ss_pred -----Cc-ccCCC------C-----------------CcccCCCC----CCcchhhhHhHHHHHHHhhhccc-ccc-C--
Q 001576 149 -----SF-AGSVA------G-----------------KDFEGDKE----GYSSAEWQERVEKWKIRQEKRGL-VTK-D-- 191 (1050)
Q Consensus 149 -----~~-~~~~~------~-----------------~~~~~~~~----~~g~~~w~~~~~~wk~~~~~~~~-~~~-~-- 191 (1050)
+| +.++. + ..+|++|| |||||+||||||+||+||+|++. +.+ .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~vh~~p~~d~~~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~k~~~~~~~~~~~ 238 (1085)
T PLN02400 159 CATPDNQSVRTTSGPLGPAERNANSSPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNMMQMTNKYHE 238 (1085)
T ss_pred CCCCccccccCCcccccccCCcccccCccCcccCCCccccCccccccccccCcHHHHHHHHHHHhhhhhhcccccccccc
Confidence 11 11110 1 13889999 99999999999999999965433 222 1
Q ss_pred C--CC--CCCCCCCchhhhhhhcCCCeeEeecCCCCcchhHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHH
Q 001576 192 D--GG--NDQGDGDDDFLMAEARQPLWRKVPIPSSKINPYRIVIILRLFILAFFLRFRILTPAYDAFPLWIISVICEVWF 267 (1050)
Q Consensus 192 ~--~~--~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~yl~~Ri~~~~~~~~~lw~~~~~~Ei~f 267 (1050)
| ++ +++.+++|.++|++.++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||
T Consensus 239 ~~~g~~~~~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wF 318 (1085)
T PLN02400 239 GKGGDMEGTGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGLWLTSVICEIWF 318 (1085)
T ss_pred ccccCCCCCCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHH
Confidence 1 11 1123356888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccccchhhhhhhhhhcCCCCCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcC
Q 001576 268 AFSWILDQFPKWFPITRETYLDRLSIRFEREGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSD 347 (1050)
Q Consensus 268 ~~~wil~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsD 347 (1050)
+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||
T Consensus 319 af~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSD 398 (1085)
T PLN02400 319 ALSWLLDQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSD 398 (1085)
T ss_pred HHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEec
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001576 348 DGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQ 427 (1050)
Q Consensus 348 DG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~ 427 (1050)
||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+|+++++
T Consensus 399 DGgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~~~~ 478 (1085)
T PLN02400 399 DGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQ 478 (1085)
T ss_pred CCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCCCCCCCCCCCCChhhHHhhhcCCCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCC
Q 001576 428 KKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNA 507 (1050)
Q Consensus 428 ~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tng 507 (1050)
++|+++|+|+|||+|||++++|||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+||||
T Consensus 479 ~~~~~~~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNa 558 (1085)
T PLN02400 479 KIPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNG 558 (1085)
T ss_pred cCCccccccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCccccCCCCCCcccchhhHHHHhhcccccCCCCceeeccCc
Q 001576 508 PFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGC 587 (1050)
Q Consensus 508 p~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~F~~id~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTGc 587 (1050)
|||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+|+||||++|+|+||+|||+||||||
T Consensus 559 P~ILNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~~GldGlqGP~YvGTGC 638 (1085)
T PLN02400 559 AYLLNVDCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGC 638 (1085)
T ss_pred ceEEecccccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCcccceeEEeeccccccccCCCccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhH
Q 001576 588 VFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEE 667 (1050)
Q Consensus 588 ~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1050)
+|||+||||++||..++...... .||+||++|+++|+.+.... +.++..+ ..+++.+++++++
T Consensus 639 ~frR~aLYG~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~~~~~~~~ 701 (1085)
T PLN02400 639 CFNRQALYGYDPVLTEEDLEPNI-----IVKSCCGSRKKGKGSKKYNI---------DKKRAMK---RTESNVPIFNMED 701 (1085)
T ss_pred ceeeeeeccCCCccccccccccc-----cccccccccccccccccccc---------ccccccc---ccccccccccccc
Confidence 99999999999986543211111 13557777766443221100 1111111 1456778999999
Q ss_pred hhhhccchhhhhhhhhhhhhhhhhhcCCchHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceeccc
Q 001576 668 IEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGS 747 (1050)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygs 747 (1050)
+++|++++|+ +++.++++++++++||+|.+|++|++++.||.+...+++++++||+|||||+||++|+||+||||+|||
T Consensus 702 ~~~~~~~~~~-~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiYGS 780 (1085)
T PLN02400 702 IEEGVEGYDD-ERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGS 780 (1085)
T ss_pred cccccccccc-hhhhhhhhhhhhhhccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCeeccc
Confidence 9999999887 788899999999999999999999999999999989999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhCCcEEEEecCCCccccccCCCCHHHHHHHhHhhhchhHHHHHhhccccccccCCCCCcccchhhhhh
Q 001576 748 ITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNT 827 (1050)
Q Consensus 748 ITED~~Tg~rLh~~GWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~~k~~Pl~~g~~~~Ls~~QRL~Yl~~ 827 (1050)
+|||+.||++||++||||+|++|++++|.|+||+|+.++++||+|||+|++||+++++||+++|+.++|+++|||+|+++
T Consensus 781 vTED~~TG~~LH~rGWrSvY~~p~r~af~GlAP~~l~d~L~Qr~RWA~G~lqI~~sr~nPl~~G~~~~L~l~QRL~Yl~~ 860 (1085)
T PLN02400 781 VTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINT 860 (1085)
T ss_pred eechHHHHHHHHccCCceEecCCCcHhhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887789999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhCCcchhccchHHHHHHHHHHHHHHHHHHhheeecCcccccccccchhHHHHHHHHHH
Q 001576 828 IVYPFTSIPLLAYCTLPAICLLTGKFIIPTLNNLASIWFLALFLSIIVTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHL 907 (1050)
Q Consensus 828 ~ly~l~sl~~liylllP~l~Ll~G~~iip~vs~~~~~~fi~lfls~~~~~lLe~rwsG~s~~~wWr~e~~W~I~~vsa~l 907 (1050)
++||++++++++|+++|++||++|++++|.++++++++|+++|++++++++||++|+|+++++||||||||+|+++|++|
T Consensus 861 ~~y~~~slp~liY~llP~l~LltG~~i~P~vs~~~~~~fi~lf~~~~~~~lLE~~~sG~si~~WWrnQq~w~I~~~Sa~L 940 (1085)
T PLN02400 861 IVYPITSIPLLAYCVLPAFCLITNKFIIPEISNYASMWFILLFISIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHL 940 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccCCccchHHHHHHHHHHHHHHHHHHHHHhhcCccHHHhhhccceeeehhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCeeeCcCCCcc-ccccceeeeccccchhHHHHHHHHHHHHHHHHHHHhHhcCCCCCcchHHHHH
Q 001576 908 FAVFQGLLKVLAGVDTNFTVTSKSAED-EEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLF 986 (1050)
Q Consensus 908 fAv~~aLlk~L~g~~~~F~VTpKg~~~-~~~~~ly~f~ws~l~iP~~~Llilnlvaiv~Gi~r~i~~~~~~w~~l~~~l~ 986 (1050)
||++++++|+|++++++|.||+|..++ +.++++|+|+||++++|+++++++|++|+++|++++++++++.|+++++++|
T Consensus 941 favl~~ilKvLgg~~~~F~VTsK~~d~~~~~~ely~f~~s~L~iP~ttl~llNlvaiv~Gv~~~i~~g~~~~g~l~~~~~ 1020 (1085)
T PLN02400 941 FAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLLVNLVGIVAGVSYAINSGYQSWGPLFGKLF 1020 (1085)
T ss_pred HHHHHHHHHHhcCCcccceecCCcccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHH
Confidence 999999999999999999999998764 3578999999999999999999999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhheeecCCCCCCCCC-cccccCCCC
Q 001576 987 FAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLLWVRIDPFLPKQKGP-LLKQCGVEC 1050 (1050)
Q Consensus 987 ~~~Wvlvnl~PflkgL~gR~~~~P~~v~~~s~lla~~~~~l~v~i~~~~~~~~~~-~~~~~~~~~ 1050 (1050)
+++|+++|+|||+||||||++|+|+||++||++||++||||||+|+||+++++|| ++++|||+|
T Consensus 1021 ~~~wvvv~l~Pf~kgL~gR~~r~P~~v~~~s~lla~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~ 1085 (1085)
T PLN02400 1021 FAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFVSDTTKAAANGQCGVNC 1085 (1085)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHheeccccccCCCCchhHhhcCcCC
Confidence 9999999999999999999999999999999999999999999999999999999 899999999
No 2
>PLN02436 cellulose synthase A
Probab=100.00 E-value=4.4e-314 Score=2767.45 Aligned_cols=1029 Identities=69% Similarity=1.279 Sum_probs=954.8
Q ss_pred CCCccccccccCCceEEEeccCCC--CCCCCCCCCCcccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCC
Q 001576 4 NPMGSFVAGSHSRNELHVMHANEE--RPPTRQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCC 81 (1050)
Q Consensus 4 ~~~~~~~~g~~~r~~~~~~~~~~~--~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~C 81 (1050)
|+++|||||||||||||+|++|++ +||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||+|+|
T Consensus 2 ~~~~~~~~gs~~r~e~~~~~~d~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~C 81 (1094)
T PLN02436 2 NTGGRLIAGSHNRNEFVLINADEIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQAC 81 (1094)
T ss_pred CcccccccccccccceeEeccccccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccC
Confidence 679999999999999999999854 689999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccCccccCCCCCCCCCccchhhhccCCCCCCCCc-------cccccccCCCCC----------C---CCCC
Q 001576 82 PGCNTRYKRHKGCARVAGDEEDNFDDDFEDEFKNHYDNQDHDQ-------HHHVTTTRSENG----------D---NNQN 141 (1050)
Q Consensus 82 PqCkt~Ykr~kgsprv~gd~ee~~~dd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----------~---~~~~ 141 (1050)
|||||+||||||||||+||||||++||+||||+++ .++++.+ +++++++++.+- . ++++
T Consensus 82 pqckt~Y~r~kgs~~~~~d~ee~~~dd~e~ef~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1094)
T PLN02436 82 PQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDYG-NNGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPGSQI 160 (1094)
T ss_pred cccCCchhhccCCCCcCCccccccchhhhhhhcCc-ccccchHHHHHHHhhhhcccCccccccccccccccccCCCcCCC
Confidence 99999999999999999999999999999999986 3332211 256776654331 0 2356
Q ss_pred cccCCCCC--------c-c-cCCC---CC-----------------cccCCCC----CCcchhhhHhHHHHHHHhhhccc
Q 001576 142 QFLNGPGS--------F-A-GSVA---GK-----------------DFEGDKE----GYSSAEWQERVEKWKIRQEKRGL 187 (1050)
Q Consensus 142 ~~~~~~~~--------~-~-~~~~---~~-----------------~~~~~~~----~~g~~~w~~~~~~wk~~~~~~~~ 187 (1050)
|++++++. | + .++. || .+||+|| |||||+||||||+||+||+|+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~~~~~ 240 (1094)
T PLN02436 161 PLLTYGEEDVEISSDRHALIVPPSTGHGNRVHPMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQNEKLQ 240 (1094)
T ss_pred cccccCcccCccCCcccccccCCcccccccccccccccccccCCCccCCccccccccccCcHHHHHHHHHHHhhhhhccc
Confidence 77766541 1 1 1111 12 2789999 99999999999999999974443
Q ss_pred cccCC-----CCC--CCCCCCchhhhhhhcCCCeeEeecCCCCcchhHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHH
Q 001576 188 VTKDD-----GGN--DQGDGDDDFLMAEARQPLWRKVPIPSSKINPYRIVIILRLFILAFFLRFRILTPAYDAFPLWIIS 260 (1050)
Q Consensus 188 ~~~~~-----~~~--~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~yl~~Ri~~~~~~~~~lw~~~ 260 (1050)
+++.. ++. ++.+++|.++++++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s 320 (1094)
T PLN02436 241 VVKHEGGNDGGNNDGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLWLTS 320 (1094)
T ss_pred ccccccccccCCCCCCCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHH
Confidence 33321 111 22234677788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccchhhhhhhhhhcCCCCCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCC
Q 001576 261 VICEVWFAFSWILDQFPKWFPITRETYLDRLSIRFEREGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDK 340 (1050)
Q Consensus 261 ~~~Ei~f~~~wil~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~k 340 (1050)
++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+||
T Consensus 321 ~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eK 400 (1094)
T PLN02436 321 VICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDK 400 (1094)
T ss_pred HHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHH
Q 001576 341 VSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRIN 420 (1050)
Q Consensus 341 l~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~ 420 (1050)
|+|||||||+|+||||||.|||+|||+||||||||+|||||||+||++|.|++++|++|+|++|||+|||||||||+|||
T Consensus 401 lscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe 480 (1094)
T PLN02436 401 VACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKIN 480 (1094)
T ss_pred eEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcCCCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHh
Q 001576 421 ALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRV 500 (1050)
Q Consensus 421 ~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrv 500 (1050)
+|+++++++|+++|+|+|||+|||++++|||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||
T Consensus 481 ~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNaLlRV 560 (1094)
T PLN02436 481 ALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSLIRV 560 (1094)
T ss_pred HHHhhcccCchhhhhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhhhhhh
Confidence 99988899999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred hccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCccccCCCCCCcccchhhHHHHhhcccccCCCCc
Q 001576 501 SAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGP 580 (1050)
Q Consensus 501 Sav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~F~~id~~D~y~n~~~vFfdi~~~glDg~qgp 580 (1050)
||+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|+||||+|||+||||++|+|+||+|||
T Consensus 561 SavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDGlqGP 640 (1094)
T PLN02436 561 SAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGP 640 (1094)
T ss_pred heeecCCceEEecccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeeccccccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCC
Q 001576 581 VYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSA 660 (1050)
Q Consensus 581 ~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1050)
+||||||+|||+||||++||...+.+...++||++|||+|||.|+++++++... +++ .++ .+...
T Consensus 641 ~YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~---~~~~~ 705 (1094)
T PLN02436 641 IYVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKE-----------KKK-KKN---REASK 705 (1094)
T ss_pred cccccCceeeeeeeeccCCccccccccccccccccccccccccccccccccccc-----------ccc-ccc---ccccc
Confidence 999999999999999999998777666778899999999999887754332211 000 111 33455
Q ss_pred CccchhHhhhhccchhhhhhhhhhhhhhhhhhcCCchHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccc
Q 001576 661 PVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKE 740 (1050)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~e 740 (1050)
++++++++++|++++++ +++..++++.++++||+|++|++|+++++||.+...+++++++||+|||||+||++|+||+|
T Consensus 706 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~e 784 (1094)
T PLN02436 706 QIHALENIEEGIEGSNN-EKSSETPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKE 784 (1094)
T ss_pred ccccccccccccccccc-hhhhhhhhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHh
Confidence 78889999999988776 77788999999999999999999999999999998899999999999999999999999999
Q ss_pred cceecccccchHHHHHHHHhCCcEEEEecCCCccccccCCCCHHHHHHHhHhhhchhHHHHHhhccccccccCCCCCccc
Q 001576 741 IGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLE 820 (1050)
Q Consensus 741 vGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~~k~~Pl~~g~~~~Ls~~Q 820 (1050)
|||+|||+|||+.||++||++||||+|++|+++||.|+||+|+.+++.||+|||+|++||+++|++|+|+|+.++|+|+|
T Consensus 785 vGwiYGSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~~~L~l~Q 864 (1094)
T PLN02436 785 IGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLE 864 (1094)
T ss_pred hCeeccceecHHHHHHHHHcCCCceEeCCCCchhhcCcCCCCHHHHHHHHHHHhhcceeeeeccCCcchhcccccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988778999999
Q ss_pred chhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcchhccchHHHHHHHHHHHHHHHHHHhheeecCcccccccccchhHHH
Q 001576 821 RLAYTNTIVYPFTSIPLLAYCTLPAICLLTGKFIIPTLNNLASIWFLALFLSIIVTGVLELRWSGVSIEDWWRNEQFWVI 900 (1050)
Q Consensus 821 RL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~vs~~~~~~fi~lfls~~~~~lLe~rwsG~s~~~wWr~e~~W~I 900 (1050)
||+|+++++||+++++.++|+++|++||++|++++|.++.+++++|+++|++++++++||++|+|.++++||||||||+|
T Consensus 865 RL~Yl~~~ly~l~Slp~liY~~lP~l~LL~G~~i~P~vs~~~~~~fi~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I 944 (1094)
T PLN02436 865 RFSYINSVVYPWTSIPLIVYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVI 944 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCccchHHHHHHHHHHHHHHHHHHHHHHhccccHHHhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeeeCcCCCccccccceeeeccccchhHHHHHHHHHHHHHHHHHHHhHhcCCCCCcc
Q 001576 901 GGVSAHLFAVFQGLLKVLAGVDTNFTVTSKSAEDEEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGP 980 (1050)
Q Consensus 901 ~~vsa~lfAv~~aLlk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~l~iP~~~Llilnlvaiv~Gi~r~i~~~~~~w~~ 980 (1050)
+++|+++||++++++|+|++++++|.||+|..+++.++++|+|+||++++|+++++++|++|+++|++++++++++.|++
T Consensus 945 ~~tSa~Lfavl~~iLKvLggs~~~F~VTsK~~d~~~~a~ly~f~~S~L~iP~tti~ilNlvaiv~Gi~~~i~~g~~~~g~ 1024 (1094)
T PLN02436 945 GGVSSHLFALFQGLLKVLAGVNTNFTVTSKAADDGEFSELYLFKWTSLLIPPTTLLIINIIGVIVGVSDAINNGYDSWGP 1024 (1094)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccceecccccccccccceeeecceeHhHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence 99999999999999999999999999999988766778999999999999999999999999999999999988889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhheeecCCCCCCCCCcccccCCCC
Q 001576 981 LFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLLWVRIDPFLPKQKGPLLKQCGVEC 1050 (1050)
Q Consensus 981 l~~~l~~~~Wvlvnl~PflkgL~gR~~~~P~~v~~~s~lla~~~~~l~v~i~~~~~~~~~~~~~~~~~~~ 1050 (1050)
+++++|+++|+++|+|||+||||||++|+||||++||++||++||||||+||||+++ +||++++|||+|
T Consensus 1025 l~~~l~~~~wvvv~lyPf~kgL~gr~~r~P~~v~v~s~lla~~~~l~~v~~~~~~~~-~~~~~~~~~~~~ 1093 (1094)
T PLN02436 1025 LFGRLFFALWVIVHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVSK-GGPVLEICGLDC 1093 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHeeeccccCC-CCccccccCccC
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999
No 3
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=3.1e-305 Score=2694.94 Aligned_cols=1017 Identities=86% Similarity=1.466 Sum_probs=938.5
Q ss_pred CCCCCCCCcccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCccccccccCccccCCC-CCCCCCcc
Q 001576 30 PTRQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRHKGCARVAGD-EEDNFDDD 108 (1050)
Q Consensus 30 ~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd-~ee~~~dd 108 (1050)
+-+..++|+||||||+||+|+|||+|||||||+|||||||||||||||+|+|||||||||||||||||+|| |||+++||
T Consensus 9 ~~~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd 88 (1044)
T PLN02915 9 TRQSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDD 88 (1044)
T ss_pred cccCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchh
Confidence 33677999999999999999999999999999999999999999999999999999999999999999999 56788899
Q ss_pred chhhhccCCCCCCCC-ccccccccCCCCCC----CCCCcccCCCCCcccCCCCCcccCCCCCCcchhhhHhHHHHHHHhh
Q 001576 109 FEDEFKNHYDNQDHD-QHHHVTTTRSENGD----NNQNQFLNGPGSFAGSVAGKDFEGDKEGYSSAEWQERVEKWKIRQE 183 (1050)
Q Consensus 109 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~ 183 (1050)
+|+||+++..+++.+ .+++++++++.+.. ++++|++++. ++..++.+|++||||||++||||||+||+||+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~wk~r~~~wk~~~~ 164 (1044)
T PLN02915 89 FEDEFQIKSPQDHEPVHQNVFAGSENGDYNAQQWRPGGPAFSST----GSVAGKDLEAEREGYGNAEWKDRVDKWKTRQE 164 (1044)
T ss_pred hhhhhccccccccchhhhhhccCCCCccccccccCCCCccccCC----CCcCCCCcCccccCcCCHHHHHHHHHHHhhhh
Confidence 999999864433322 24667776654311 3455666542 33345679999999999999999999999998
Q ss_pred hccccccCCC-CCCCCCCCchhhhhhhcCCCeeEeecCCCCcchhHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHH
Q 001576 184 KRGLVTKDDG-GNDQGDGDDDFLMAEARQPLWRKVPIPSSKINPYRIVIILRLFILAFFLRFRILTPAYDAFPLWIISVI 262 (1050)
Q Consensus 184 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~yl~~Ri~~~~~~~~~lw~~~~~ 262 (1050)
|++.+.++.+ ..++..++|.++|++.++||+||+++++++|+|||++++++|+++++||+||++||+.+++|+|+++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~ 244 (1044)
T PLN02915 165 KRGLVNKDDSDDGDDKGDEEEYLLAEARQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVI 244 (1044)
T ss_pred hhccccccccCCCCCCCCcccccccccCCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHH
Confidence 7766665422 112223467888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccccccchhhhhhhhhhcCCCCCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcE
Q 001576 263 CEVWFAFSWILDQFPKWFPITRETYLDRLSIRFEREGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVS 342 (1050)
Q Consensus 263 ~Ei~f~~~wil~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~ 342 (1050)
||+||+|+|+|+|++||+||+|+||+|||++|||+++++++||+|||||||+||.||||++|+||||||||+|||+|||+
T Consensus 245 cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKls 324 (1044)
T PLN02915 245 CEIWFALSWILDQFPKWFPINRETYLDRLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVS 324 (1044)
T ss_pred HHHHHHHHHHHccCccccccccccCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhccccccee
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 001576 343 CYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINAL 422 (1050)
Q Consensus 343 ~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l 422 (1050)
|||||||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|
T Consensus 325 cYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l 404 (1044)
T PLN02915 325 CYVSDDGASMLLFDTLSETAEFARRWVPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAL 404 (1044)
T ss_pred EEEecCCchHhHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcCCCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhc
Q 001576 423 VSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSA 502 (1050)
Q Consensus 423 ~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa 502 (1050)
+++++++|+++|+|+|||+||||+++|||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||
T Consensus 405 ~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSa 484 (1044)
T PLN02915 405 VAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSA 484 (1044)
T ss_pred HhhhccCCcccccccCCccCCCCCCCCCccceEEeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCccccCCCCCCcccchhhHHHHhhcccccCCCCcee
Q 001576 503 VLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVY 582 (1050)
Q Consensus 503 v~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~F~~id~~D~y~n~~~vFfdi~~~glDg~qgp~y 582 (1050)
+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|+||||+|||+||||++|+|+||+|||+|
T Consensus 485 vmTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~Y 564 (1044)
T PLN02915 485 VLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVY 564 (1044)
T ss_pred eeecCcEEEeeccccccCcchhhHhhceeeecCCCCCeeEEEeCCcccCCCCCCCCcCccceEEEeeecccccccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccccccC----C-CCcccccchhhhhh-----cccc
Q 001576 583 VGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKG----D-KRGFFSGLYTKKKK-----MMGK 652 (1050)
Q Consensus 583 vGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~-----~~~~ 652 (1050)
|||||+|||+||||++||..++.|+++++||+.|||+||+.++|+++.... + ...+.......+++ +...
T Consensus 565 vGTGCffrR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (1044)
T PLN02915 565 VGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGK 644 (1044)
T ss_pred ccCCceeeeeeecCcCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999888888899999999999999887765432110 1 11111000000000 0000
Q ss_pred ccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhhhhcCCchHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccc
Q 001576 653 NYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYE 732 (1050)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE 732 (1050)
....+++.+++++++|++|++++|+++++++++++.++++||+|++|++|++++.+|.+...+++++++||+|||||+||
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE 724 (1044)
T PLN02915 645 KYGRKKSQAVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYE 724 (1044)
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCC
Confidence 12345677889999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cccccccccceecccccchHHHHHHHHhCCcEEEEecCCCccccccCCCCHHHHHHHhHhhhchhHHHHHhhcccccccc
Q 001576 733 EKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGY 812 (1050)
Q Consensus 733 ~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~~k~~Pl~~g~ 812 (1050)
++|+||+||||+|||+|||+.||++||++||||+|++|++++|.|+||+|+.++++||+|||+|++||++++++|+|+++
T Consensus 725 ~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~ 804 (1044)
T PLN02915 725 EKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAY 804 (1044)
T ss_pred ccCchhHhhCccccccccHHHHHHHHHccCCcEEeeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcchhccchHHHHHHHHHHHHHHHHHHhheeecCccccccc
Q 001576 813 GGKLKWLERLAYTNTIVYPFTSIPLLAYCTLPAICLLTGKFIIPTLNNLASIWFLALFLSIIVTGVLELRWSGVSIEDWW 892 (1050)
Q Consensus 813 ~~~Ls~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~vs~~~~~~fi~lfls~~~~~lLe~rwsG~s~~~wW 892 (1050)
.++|+++||++|+++++||++++++++|+++|++||++|++++|.++.+++++|+++|++++++++++++|+|+++++||
T Consensus 805 ~~~L~l~QRL~Yl~~~~yp~~slp~liY~llP~l~LLtG~~i~P~~s~~~~~~f~~lfls~~~~~lLE~~wsG~si~~WW 884 (1044)
T PLN02915 805 GGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLNNLASIWFLALFLSIIATSVLELRWSGVSIEDLW 884 (1044)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 78999999999999999999999999999999999999999999888877888899999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCcCCCccc--cccceeeeccccchhHHHHHHHHHHHHHHHHHHHh
Q 001576 893 RNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKSAEDE--EFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDA 970 (1050)
Q Consensus 893 r~e~~W~I~~vsa~lfAv~~aLlk~L~g~~~~F~VTpKg~~~~--~~~~ly~f~ws~l~iP~~~Llilnlvaiv~Gi~r~ 970 (1050)
||||||+|+++++++||++++++|+|++++++|+||+|..+++ +++++|+|+||++++|+++++++|++|+++|++++
T Consensus 885 rnQq~w~I~~tSa~Lfavl~~iLKvLg~se~~F~VTsK~~d~~~d~~~ely~F~~S~l~iP~ttllllNlvalv~Gi~~~ 964 (1044)
T PLN02915 885 RNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTSKAADDEADEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDA 964 (1044)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcccCCcceecCCccccchhhhccceeecceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987633 56789999999999999999999999999999999
Q ss_pred HhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhheeecCCCCCCCCCcccccCCCC
Q 001576 971 INNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLLWVRIDPFLPKQKGPLLKQCGVEC 1050 (1050)
Q Consensus 971 i~~~~~~w~~l~~~l~~~~Wvlvnl~PflkgL~gR~~~~P~~v~~~s~lla~~~~~l~v~i~~~~~~~~~~~~~~~~~~~ 1050 (1050)
++++++.||++++++|+++|+++|+|||++|||||++|+||||++||++||++||||||+|+||+++++||++++|||+|
T Consensus 965 i~~~~~~~g~l~~~l~~~~wvvv~lyPf~kgLmgR~~r~P~~v~v~s~lla~~~~ll~v~~~~~~~~~~~~~~~~~~~~~ 1044 (1044)
T PLN02915 965 INNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPILKQCGVEC 1044 (1044)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeehHHHHHHHHHHHHHHheeccccCCCCCccccccCCCC
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
No 4
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=1.1e-302 Score=2678.34 Aligned_cols=1010 Identities=71% Similarity=1.280 Sum_probs=917.8
Q ss_pred ccCCC--CCCCCCCCCCcccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCccccccccCccccCCC
Q 001576 23 HANEE--RPPTRQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRHKGCARVAGD 100 (1050)
Q Consensus 23 ~~~~~--~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd 100 (1050)
++|++ +||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||
T Consensus 2 ~~~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gD 81 (1079)
T PLN02638 2 ESEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGD 81 (1079)
T ss_pred CCCCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCcc
Confidence 44555 5799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CccchhhhccCCCCCCCCc-------cccccccCCCCC---------CCCCCcccCCCC------------Cc-
Q 001576 101 EEDNF-DDDFEDEFKNHYDNQDHDQ-------HHHVTTTRSENG---------DNNQNQFLNGPG------------SF- 150 (1050)
Q Consensus 101 ~ee~~-~dd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---------~~~~~~~~~~~~------------~~- 150 (1050)
||||+ +||+||||++++.+++..+ +++|++|++.+- .++++|++++++ +|
T Consensus 82 eeed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 161 (1079)
T PLN02638 82 EEEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERLS 161 (1079)
T ss_pred ccccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCcccccCccccCccCCCCCcccc
Confidence 88886 8999999998654433221 367887766431 135668887754 11
Q ss_pred ccCC--CC---------------CcccCCCC----CCcchhhhHhHHHHHHHhhhccc--cccC------CC-CC---CC
Q 001576 151 AGSV--AG---------------KDFEGDKE----GYSSAEWQERVEKWKIRQEKRGL--VTKD------DG-GN---DQ 197 (1050)
Q Consensus 151 ~~~~--~~---------------~~~~~~~~----~~g~~~w~~~~~~wk~~~~~~~~--~~~~------~~-~~---~~ 197 (1050)
+.++ .| ..+||+|| ||||++||||||+||.||+|++. +.+. |+ +. ++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1079)
T PLN02638 162 MASPGAGGKRIPYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDASTD 241 (1079)
T ss_pred ccCccccCCcccccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCccc
Confidence 1111 01 13889999 99999999999999999964432 2221 11 11 11
Q ss_pred CCCCchhhhhhhcCCCeeEeecCCCCcchhHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHhhcc
Q 001576 198 GDGDDDFLMAEARQPLWRKVPIPSSKINPYRIVIILRLFILAFFLRFRILTPAYDAFPLWIISVICEVWFAFSWILDQFP 277 (1050)
Q Consensus 198 ~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~yl~~Ri~~~~~~~~~lw~~~~~~Ei~f~~~wil~q~~ 277 (1050)
.+++|+++|+++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++
T Consensus 242 ~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q~~ 321 (1079)
T PLN02638 242 VLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQFP 321 (1079)
T ss_pred cccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22467888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhhhhhhhhcCCCCCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHh
Q 001576 278 KWFPITRETYLDRLSIRFEREGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDA 357 (1050)
Q Consensus 278 kw~Pv~R~t~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~a 357 (1050)
||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+|+|||||
T Consensus 322 Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~A 401 (1079)
T PLN02638 322 KWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEA 401 (1079)
T ss_pred cccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHHHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhhhhhhccCCCCCcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccc
Q 001576 358 LSETAEFARRWVPFCKKYIIEPRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQ 437 (1050)
Q Consensus 358 l~E~a~fA~~WvPFCkk~~iepR~Pe~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~ 437 (1050)
|.|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+++++++++|+++|+|+
T Consensus 402 L~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~m~ 481 (1079)
T PLN02638 402 LSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWIMQ 481 (1079)
T ss_pred HHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCChhhHHhhhcCCCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCC
Q 001576 438 DGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDH 517 (1050)
Q Consensus 438 dgt~w~g~~~~dhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~ 517 (1050)
||++|||++++|||+||||+++++|+.|.+|++||+|||||||||||++||+||||||+|+||||+||||||||||||||
T Consensus 482 dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDm 561 (1079)
T PLN02638 482 DGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDH 561 (1079)
T ss_pred CCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhhhcCcCCCccEEEEecCccccCCCCCCcccchhhHHHHhhcccccCCCCceeeccCceehhhhhcCC
Q 001576 518 YLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGY 597 (1050)
Q Consensus 518 ~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~F~~id~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTGc~fRR~ALyg~ 597 (1050)
|+|||++||+||||||||+.|+++|||||||+|||+|++|||+|+++||||++|+|+||+|||+||||||+|||+||||+
T Consensus 562 YiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALYG~ 641 (1079)
T PLN02638 562 YINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGY 641 (1079)
T ss_pred ccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcceeehhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccc--h
Q 001576 598 DPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEG--Y 675 (1050)
Q Consensus 598 ~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 675 (1050)
+||...+. +.+.-+++||++.++++++..... ..|++..++ ...+.+++++++++++.+. +
T Consensus 642 ~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 704 (1079)
T PLN02638 642 EPPIKPKH------KKPGFLSSLCGGSRKKSSKSSKKG--------SDKKKSGKH---VDPTVPVFNLEDIEEGVEGAGF 704 (1079)
T ss_pred CCcccccc------cccccccccccccccccccccchh--------hcccccccc---cccccccccccccccccccccc
Confidence 99864321 112223346666443322111000 000100011 2344567788888887665 3
Q ss_pred hhhhhhhhhhhhhhhhhcCCchHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHH
Q 001576 676 DELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTG 755 (1050)
Q Consensus 676 ~~~~~~~~~~~~~~~~~fG~s~~f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg 755 (1050)
|+ +++.+++++.++++||+|++|++|++++.+|.+...+++++++||++|+||+||++|+||+||||+|||+|||+.||
T Consensus 705 ~~-~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG 783 (1079)
T PLN02638 705 DD-EKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTG 783 (1079)
T ss_pred ch-hhhhhhhhhhhhhhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHH
Confidence 33 66778999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEEecCCCccccccCCCCHHHHHHHhHhhhchhHHHHHhhccccccccCCCCCcccchhhhhhhhhhhhHH
Q 001576 756 FKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSI 835 (1050)
Q Consensus 756 ~rLh~~GWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~~k~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~sl 835 (1050)
++||++||||+|++|+++||.|+||+|+.+++.||+|||+|++||+++|++|+++|+.++|+++||++|+++++||++++
T Consensus 784 ~rLH~rGWrSvY~~P~r~AF~GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl~~~~yp~~si 863 (1079)
T PLN02638 784 FKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPITSI 863 (1079)
T ss_pred HHHHcCCCcEEecCCCchHhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999989999999999999999999999999999999999999988778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcchhccchHHHHHHHHHHHHHHHHHHhheeecCcccccccccchhHHHHHHHHHHHHHHHHHH
Q 001576 836 PLLAYCTLPAICLLTGKFIIPTLNNLASIWFLALFLSIIVTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLL 915 (1050)
Q Consensus 836 ~~liylllP~l~Ll~G~~iip~vs~~~~~~fi~lfls~~~~~lLe~rwsG~s~~~wWr~e~~W~I~~vsa~lfAv~~aLl 915 (1050)
++++|+++|++||++|++++|.++++++++|+++|++++++++||++|+|.++++||||||||+|+++|+++||++++++
T Consensus 864 p~liY~llP~l~Ll~G~~i~P~vs~~~~~~f~~lfl~~~~~~llE~~wsG~si~~WWrnQr~w~I~~tSa~lfavl~~iL 943 (1079)
T PLN02638 864 PLLLYCTLPAVCLLTGKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLL 943 (1079)
T ss_pred HHHHHHHHHHHHHHcCCccCCCccchHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhhheehhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCeeeCcCCCccc-cccceeeeccccchhHHHHHHHHHHHHHHHHHHHhHhcCCCCCcchHHHHHHHHHHHHH
Q 001576 916 KVLAGVDTNFTVTSKSAEDE-EFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVH 994 (1050)
Q Consensus 916 k~L~g~~~~F~VTpKg~~~~-~~~~ly~f~ws~l~iP~~~Llilnlvaiv~Gi~r~i~~~~~~w~~l~~~l~~~~Wvlvn 994 (1050)
|+|++++++|.||+|..+++ +++++|+|+||++++|+++|+++|++|+++|++++++++++.|+++++++|+++|+++|
T Consensus 944 K~Lggs~~~F~VTsK~~d~~~~~~ely~f~wS~l~iP~ttl~iiNlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~ 1023 (1079)
T PLN02638 944 KVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVH 1023 (1079)
T ss_pred HHHccCcccceeccccccccccccceeEecceehhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHH
Confidence 99999999999999987643 57899999999999999999999999999999999988888999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhheeecCCCCCCCCCcccccCCCC
Q 001576 995 LYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLLWVRIDPFLPKQKGPLLKQCGVEC 1050 (1050)
Q Consensus 995 l~PflkgL~gR~~~~P~~v~~~s~lla~~~~~l~v~i~~~~~~~~~~~~~~~~~~~ 1050 (1050)
+|||+||||||++|+||||++||++||++||||||+|+||+++++||.+++||++|
T Consensus 1024 l~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1079 (1079)
T PLN02638 1024 LYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1079 (1079)
T ss_pred HHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 99999999999999999999999999999999999999999999999999999999
No 5
>PLN02189 cellulose synthase
Probab=100.00 E-value=4.4e-298 Score=2632.30 Aligned_cols=999 Identities=73% Similarity=1.291 Sum_probs=914.2
Q ss_pred CCCccccccccCCceEEEeccCCCCCCCCCCCCCcccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCC
Q 001576 4 NPMGSFVAGSHSRNELHVMHANEERPPTRQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPG 83 (1050)
Q Consensus 4 ~~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPq 83 (1050)
|+++||+||||||||||+|++|+..||+++.++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||
T Consensus 2 ~~~~g~~~gs~~r~~~~~~~~~~~~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~Cpq 81 (1040)
T PLN02189 2 EASAGLVAGSHNRNELVVIHGHEEPKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQ 81 (1040)
T ss_pred CcccccccccccccceeeeccccCCCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcc
Confidence 68999999999999999999884368999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCccccCCCCCCCCCccchhhhccCCCCCCCCc------cccccccCCCCCC--CCCCcccCCCC-------
Q 001576 84 CNTRYKRHKGCARVAGDEEDNFDDDFEDEFKNHYDNQDHDQ------HHHVTTTRSENGD--NNQNQFLNGPG------- 148 (1050)
Q Consensus 84 Ckt~Ykr~kgsprv~gd~ee~~~dd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~------- 148 (1050)
||||||||||||||+||||||++||+||||+++..+++.++ +++++++++.+-. ++++|++++++
T Consensus 82 Ckt~Y~r~kgs~~v~gd~ee~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (1040)
T PLN02189 82 CKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDEQDKNKHITEAMLHGKMSYGRGPDDDENNQFPPVITGVRSRPVSGE 161 (1040)
T ss_pred cCCchhhccCCCCcCCccccccchhhhhhccccccccchhHHHHHHhhhhcccCCCcccCCCcCCCcccccCccccccCC
Confidence 99999999999999999999999999999998542211111 2567776654311 35567776643
Q ss_pred ---------Cc-c-cCCCCCc-------------ccCCCCCCcchhhhHhHHHHHHHhhhccccccCCCCCCCCCCCchh
Q 001576 149 ---------SF-A-GSVAGKD-------------FEGDKEGYSSAEWQERVEKWKIRQEKRGLVTKDDGGNDQGDGDDDF 204 (1050)
Q Consensus 149 ---------~~-~-~~~~~~~-------------~~~~~~~~g~~~w~~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1050)
+| + .+..|++ +||+|| .+||||||+||+||++. ++ +++ .+++|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~wk~rv~~wk~~~~~~-----~~-~~~-~~~~d~~ 230 (1040)
T PLN02189 162 FPIGSGYGHGEQMLSSSLHKRVHPYPVSEPGSAKWDEKKE----GGWKERMDDWKMQQGNL-----GP-DPD-DYDADMA 230 (1040)
T ss_pred cCccccccccccccCCcccCccCcccccCCCcccCCcccc----ccHHHHHHHHHhhcccC-----CC-CCC-CCchhhh
Confidence 11 1 1112233 566666 33999999999999611 11 122 2246777
Q ss_pred hhhhhcCCCeeEeecCCCCcchhHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHhhccccccccc
Q 001576 205 LMAEARQPLWRKVPIPSSKINPYRIVIILRLFILAFFLRFRILTPAYDAFPLWIISVICEVWFAFSWILDQFPKWFPITR 284 (1050)
Q Consensus 205 ~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~yl~~Ri~~~~~~~~~lw~~~~~~Ei~f~~~wil~q~~kw~Pv~R 284 (1050)
+++++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|
T Consensus 231 ~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~~s~~~E~wFaf~Wll~q~~kw~Pv~R 310 (1040)
T PLN02189 231 LIDEARQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGLWLTSIICEIWFAVSWILDQFPKWFPIDR 310 (1040)
T ss_pred hcccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHHHHHHHHHHHHHHHHHHHccCcccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhcCCCCCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHH
Q 001576 285 ETYLDRLSIRFEREGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEF 364 (1050)
Q Consensus 285 ~t~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~f 364 (1050)
+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.|||+|
T Consensus 311 ~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~F 390 (1040)
T PLN02189 311 ETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLTFEALSETAEF 390 (1040)
T ss_pred eeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHHH
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhccCCCCCcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCC
Q 001576 365 ARRWVPFCKKYIIEPRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPG 444 (1050)
Q Consensus 365 A~~WvPFCkk~~iepR~Pe~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g 444 (1050)
||+||||||||||||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+++++++++|+++|.|+||++|||
T Consensus 391 A~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~~m~dGt~W~g 470 (1040)
T PLN02189 391 ARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGWIMQDGTPWPG 470 (1040)
T ss_pred HHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccceeccCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHhhhcCCCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHH
Q 001576 445 NNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKA 524 (1050)
Q Consensus 445 ~~~~dhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~ 524 (1050)
++++|||+||||+++++|+.|.+|++||+|||||||||||++||+||||||+|+||||+|||||||||||||||+|||++
T Consensus 471 ~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~a 550 (1040)
T PLN02189 471 NNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKA 550 (1040)
T ss_pred CCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCcCCCccEEEEecCccccCCCCCCcccchhhHHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCC
Q 001576 525 VREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEK 604 (1050)
Q Consensus 525 Lr~amcf~~Dp~~g~~v~~VQ~PQ~F~~id~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTGc~fRR~ALyg~~p~~~~~ 604 (1050)
||+||||||||+.|+++|||||||+|||+|++|||+|+++||||++|+|+||+|||+||||||+|||+||||++||+..+
T Consensus 551 lr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALyG~~p~~~~~ 630 (1040)
T PLN02189 551 VREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYDPPKGPK 630 (1040)
T ss_pred HHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeeecccccCCCccccccCceeeeeeeeccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986655
Q ss_pred CCCCCCCCCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhh
Q 001576 605 RPKMTCDCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLM 684 (1050)
Q Consensus 605 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1050)
.+.+++. +|+||+.+++++..+ .+ .+.. .++++++++ +++..+
T Consensus 631 ~~~~~~~-----~~~~~~~~~~~~~~~-~~-----------------------~~~~-------~~~~~~~~~-~~~~~~ 673 (1040)
T PLN02189 631 RPKMVTC-----DCCPCFGRRKKKHAK-NG-----------------------LNGE-------VAALGGMES-DKEMLM 673 (1040)
T ss_pred ccccccc-----chhhhcccccccccc-cc-----------------------cccc-------cccccccch-hhhhhh
Confidence 4443321 234555443322111 00 0000 012222232 455677
Q ss_pred hhhhhhhhcCCchHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcE
Q 001576 685 SQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWK 764 (1050)
Q Consensus 685 ~~~~~~~~fG~s~~f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWr 764 (1050)
++++++++||+|.+|++|++.+.+|.+..++++++++||++|+||+||++|+|||||||+|||+|||+.||++||++|||
T Consensus 674 ~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTED~~TG~rlH~rGWr 753 (1040)
T PLN02189 674 SQMNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDILTGFKMHCRGWR 753 (1040)
T ss_pred hhhhhHhhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccccCCchhhccCeeccccccHHHHHHHHHccCCc
Confidence 88999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCccccccCCCCHHHHHHHhHhhhchhHHHHHhhccccccccC-CCCCcccchhhhhhhhhhhhHHHHHHHHHH
Q 001576 765 SVYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYG-GKLKWLERLAYTNTIVYPFTSIPLLAYCTL 843 (1050)
Q Consensus 765 svY~~p~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~~k~~Pl~~g~~-~~Ls~~QRL~Yl~~~ly~l~sl~~liylll 843 (1050)
|+|++|++++|.|+||+|+.+++.||+|||+|++||+++++||+++|+. ++|+++||++|+++++||++++++++|+++
T Consensus 754 SvY~~p~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~l~QRL~Yl~~~ly~~~sip~liY~~l 833 (1040)
T PLN02189 754 SIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKGGNLKWLERFAYVNTTIYPFTSLPLLAYCTL 833 (1040)
T ss_pred eEecCCCcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998763 679999999999999999999999999999
Q ss_pred HHHHHHhCCcchhccchHHHHHHHHHHHHHHHHHHhheeecCcccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001576 844 PAICLLTGKFIIPTLNNLASIWFLALFLSIIVTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDT 923 (1050)
Q Consensus 844 P~l~Ll~G~~iip~vs~~~~~~fi~lfls~~~~~lLe~rwsG~s~~~wWr~e~~W~I~~vsa~lfAv~~aLlk~L~g~~~ 923 (1050)
|++||++|++++|.++++++++|+++|+++++++++|++|+|+++++||||||||+|+++|+++||++++++|+|+++++
T Consensus 834 P~l~Ll~g~~i~p~vs~~~~~~fi~lf~~~~~~~llE~~~sG~s~~~WWrnQq~w~I~~~Sa~Lfavl~~ilKvlggs~~ 913 (1040)
T PLN02189 834 PAICLLTGKFIMPPISTFASLFFIALFMSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDT 913 (1040)
T ss_pred HHHHHhcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeCcCCCccccccceeeeccccchhHHHHHHHHHHHHHHHHHHHhHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 001576 924 NFTVTSKSAEDEEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLM 1003 (1050)
Q Consensus 924 ~F~VTpKg~~~~~~~~ly~f~ws~l~iP~~~Llilnlvaiv~Gi~r~i~~~~~~w~~l~~~l~~~~Wvlvnl~PflkgL~ 1003 (1050)
+|.||+|..++++++++|+|+||++++|+++|+++|++|+++|++++++++++.|+++++++|+++|+++|+|||+||||
T Consensus 914 ~F~VTsK~~~d~~~~~ly~f~~s~l~iP~ttl~i~Nlvaiv~g~~~~~~~~~~~~~~~~~~~~~~~wvv~~~~Pf~kgl~ 993 (1040)
T PLN02189 914 NFTVTSKATDDDEFGELYAFKWTTLLIPPTTLLIINIVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLM 993 (1040)
T ss_pred cceeccccccccccccceeecceeHhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999888888899999999999999999999999999999999998888999999999999999999999999999
Q ss_pred cCCCCCcchHHHHHHHHHHHHHhhheeecCCCCCCCCCcccccCCCC
Q 001576 1004 GRQNRTPTIVVLWSVLLASIFSLLWVRIDPFLPKQKGPLLKQCGVEC 1050 (1050)
Q Consensus 1004 gR~~~~P~~v~~~s~lla~~~~~l~v~i~~~~~~~~~~~~~~~~~~~ 1050 (1050)
||++|+||||++||++|+++||||||+|+||+++++||.+++||++|
T Consensus 994 gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1040 (1040)
T PLN02189 994 GRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDVKQCGINC 1040 (1040)
T ss_pred ccCCCCCeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 99999999999999999999999999999999999999999999999
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=7.3e-286 Score=2516.23 Aligned_cols=968 Identities=70% Similarity=1.254 Sum_probs=879.1
Q ss_pred CCCCCCcccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCccccccccCccccCCCCCCCCCccchh
Q 001576 32 RQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRHKGCARVAGDEEDNFDDDFED 111 (1050)
Q Consensus 32 ~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~ee~~~dd~~~ 111 (1050)
-.+++|+||||||+||+|+|||+|||||||+|||||||||||||||||+||||||||| ||++.||+|+
T Consensus 2 ~~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk------------~~~~~~d~~~ 69 (977)
T PLN02195 2 MESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD------------AENVFDDVET 69 (977)
T ss_pred CcCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc------------cccccchhhh
Confidence 3578999999999999999999999999999999999999999999999999999998 5677899999
Q ss_pred hhccCCCCCCCCccccccccCCCCCCCCCCcccCCCCCcccCCCCCcccCCCCCCcchhhhHhHHHHHHHhhhccc-ccc
Q 001576 112 EFKNHYDNQDHDQHHHVTTTRSENGDNNQNQFLNGPGSFAGSVAGKDFEGDKEGYSSAEWQERVEKWKIRQEKRGL-VTK 190 (1050)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~wk~~~~~~~~-~~~ 190 (1050)
||+- ++ ++..++++++++.+..++++|++++- ++ .+. ++|||++||||||+||.||+|++. +.+
T Consensus 70 ~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~---~~~~~~~wk~r~~~wk~~~~~~~~~~~~ 134 (977)
T PLN02195 70 KHSR---NQ-STMASHLNDTQDVGIHARHISSVSTV-------DS-ELN---DEYGNPIWKNRVESWKDKKNKKKKSAKK 134 (977)
T ss_pred hhcc---ch-hhhhhhcccCcCCCCCCccccccccC-------CC-ccc---CccCCHHHHHHHHHHHHhhhhhcccccc
Confidence 9943 21 12346777765433212334444320 11 111 469999999999999999965443 322
Q ss_pred C----CCCCCCCCCCchhhhhhhcCCCeeEeecCCCCcchhHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHH
Q 001576 191 D----DGGNDQGDGDDDFLMAEARQPLWRKVPIPSSKINPYRIVIILRLFILAFFLRFRILTPAYDAFPLWIISVICEVW 266 (1050)
Q Consensus 191 ~----~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~yl~~Ri~~~~~~~~~lw~~~~~~Ei~ 266 (1050)
+ |+.+++..++|.++ +|.++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~-~~~~~pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~w 213 (977)
T PLN02195 135 KEAHKAQIPPEQQMEEKPS-ADAYEPLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIW 213 (977)
T ss_pred ccccccCCCCccCCccccc-ccccCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence 2 22122223456664 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccccchhhhhhhhhhcCCCCCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEc
Q 001576 267 FAFSWILDQFPKWFPITRETYLDRLSIRFEREGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVS 346 (1050)
Q Consensus 267 f~~~wil~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvs 346 (1050)
|+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+||||
T Consensus 214 Faf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvS 293 (977)
T PLN02195 214 FAFSWVLDQFPKWSPINRETYIDRLSARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVS 293 (977)
T ss_pred HHHHHHHhcccccccccceECHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEe
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001576 347 DDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKA 426 (1050)
Q Consensus 347 DDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~ 426 (1050)
|||+|+||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+|++++
T Consensus 294 DDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~ 373 (977)
T PLN02195 294 DDGAAMLSFESLVETAEFARKWVPFCKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKA 373 (977)
T ss_pred cCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccCCCCCCCCCCCCChhhHHhhhcCCCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCC
Q 001576 427 QKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTN 506 (1050)
Q Consensus 427 ~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tn 506 (1050)
+++|+++|.|+|||+|||++++|||+||||+++++|+.|.+|++||+|||||||||||++||+||||||+|+||||+|||
T Consensus 374 ~~~~~~~~~m~d~t~W~g~~~~dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTN 453 (977)
T PLN02195 374 QKTPEEGWTMQDGTPWPGNNTRDHPGMIQVFLGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTN 453 (977)
T ss_pred ccCCcccccccCCccCCCCCCCCCcchhhhhccCCCCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCccccCCCCCCcccchhhHHHHhhcccccCCCCceeeccC
Q 001576 507 APFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTG 586 (1050)
Q Consensus 507 gp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~F~~id~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTG 586 (1050)
||||||||||||+|||++||+|||||+||+.|+++|||||||+|+|+|++|+|+|++++|||++|+|+||+|||+|||||
T Consensus 454 ap~il~lDcDmy~n~s~~lr~AMCf~~D~~~g~~va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTG 533 (977)
T PLN02195 454 APYILNLDCDHYVNNSKAVREAMCFLMDPVVGRDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTG 533 (977)
T ss_pred CCeEEEecCccccCcHHHHHHHHhhccCcccCCeeEEEcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchh
Q 001576 587 CVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLE 666 (1050)
Q Consensus 587 c~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1050)
|+|||+||||++||..++.++..+.+| | |||+++++.+...+.. ++..++ .+.+..+..++
T Consensus 534 C~fRR~ALyG~~p~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~------------~~~~~~---~~~~~~~~~~~ 594 (977)
T PLN02195 534 CVFNRQALYGYGPPSLPRLPKSSSSSS---S-CCCPTKKKPEQDPSEI------------YRDAKR---EDLNAAIFNLR 594 (977)
T ss_pred ceeeehhhhccCccccccccccccccc---c-ccccccccccccchhh------------cccccc---ccccccccccc
Confidence 999999999999987655444444433 3 4665544432111100 000111 11223334444
Q ss_pred HhhhhccchhhhhhhhhhhhhhhhhhcCCchHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecc
Q 001576 667 EIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYG 746 (1050)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~yg 746 (1050)
++++ +++.+++..+++++++++||+|.+|++|++++.+|.+...+++++++||++|+||+||++|+||+||||+||
T Consensus 595 ~~~~----~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YG 670 (977)
T PLN02195 595 EIDN----YDEYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYG 670 (977)
T ss_pred cccc----cchhhhhhhhhhhHHHHhhcccHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhhcccCccccchhhhcCeecc
Confidence 4332 445567788999999999999999999999999999988889999999999999999999999999999999
Q ss_pred cccchHHHHHHHHhCCcEEEEecCCCccccccCCCCHHHHHHHhHhhhchhHHHHHhhccccccccC-CCCCcccchhhh
Q 001576 747 SITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYG-GKLKWLERLAYT 825 (1050)
Q Consensus 747 sITED~~Tg~rLh~~GWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~~k~~Pl~~g~~-~~Ls~~QRL~Yl 825 (1050)
|+|||+.||++||++||||+|++|.+++|.|+||+|+.++++||+|||+|++||+++++||+|+|+. ++|+++||++|+
T Consensus 671 SvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~~~QRL~Yl 750 (977)
T PLN02195 671 SVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLAYI 750 (977)
T ss_pred ceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHHHHHHHHHHHHhchhhhhhccCCccccccCCCCCCHHHHHHHH
Confidence 9999999999999999999999998889999999999999999999999999999999999998764 789999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCcchhccchHHHHHHHHHHHHHHHHHHhheeecCcccccccccchhHHHHHHHH
Q 001576 826 NTIVYPFTSIPLLAYCTLPAICLLTGKFIIPTLNNLASIWFLALFLSIIVTGVLELRWSGVSIEDWWRNEQFWVIGGVSA 905 (1050)
Q Consensus 826 ~~~ly~l~sl~~liylllP~l~Ll~G~~iip~vs~~~~~~fi~lfls~~~~~lLe~rwsG~s~~~wWr~e~~W~I~~vsa 905 (1050)
++++||++++++++|+++|++||++|++++|.++++++++|+++|+++++++++|++|+|.++++||||||||+|+++|+
T Consensus 751 ~~~ly~~~slp~liY~~lP~l~Ll~G~~i~P~vs~~~~~~f~~lfl~~~~~~~lE~~~sG~si~~WWrnqq~w~I~~tSa 830 (977)
T PLN02195 751 NTIVYPFTSLPLIAYCTLPAICLLTGKFIIPTLSNLASMLFLGLFISIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSA 830 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCeecccchHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhhhhhhhhhhhhHH
Confidence 99999999999999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCeeeCcCCCccccccceeeeccccchhHHHHHHHHHHHHHHHHHHHhHhcCCCCCcchHHHH
Q 001576 906 HLFAVFQGLLKVLAGVDTNFTVTSKSAEDEEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKL 985 (1050)
Q Consensus 906 ~lfAv~~aLlk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~l~iP~~~Llilnlvaiv~Gi~r~i~~~~~~w~~l~~~l 985 (1050)
+|||++++++|+|++++++|+||+|..++++++++|+|+||++++|+++++++|++|+++|++++++++++.|+++++++
T Consensus 831 ~Lfavl~~llKvLggs~~~F~VTsK~~dd~~~~~~Y~f~~S~l~iP~ttl~ilNlvaiv~g~~~~i~~~~~~~g~l~~~~ 910 (977)
T PLN02195 831 HLFAVFQGFLKMLAGLDTNFTVTAKAADDTEFGELYMVKWTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKV 910 (977)
T ss_pred HHHHHHHHHHHHHcCCCccceeccccccccchhcceeccceehhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHH
Confidence 99999999999999999999999999887788999999999999999999999999999999999998888999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhheeecCCCCCCCCCc-cccc-CCCC
Q 001576 986 FFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLLWVRIDPFLPKQKGPL-LKQC-GVEC 1050 (1050)
Q Consensus 986 ~~~~Wvlvnl~PflkgL~gR~~~~P~~v~~~s~lla~~~~~l~v~i~~~~~~~~~~~-~~~~-~~~~ 1050 (1050)
|+++|+++|+|||+||||||++|+||||++||++||++||||||+||||+++++||+ +++| |++|
T Consensus 911 ~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~ 977 (977)
T PLN02195 911 FFAFWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVGKTDTTTLSNNCISIDC 977 (977)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHeeccccccCCCCCchhhccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999 9999 9999
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=1.1e-254 Score=2258.91 Aligned_cols=948 Identities=51% Similarity=0.936 Sum_probs=824.6
Q ss_pred CCccccccccC---CceEE--EeccCCCCCCCCCCCCCcccc--cCCcccccCCCCeeecccCCCCccchhhhhhhhhcC
Q 001576 5 PMGSFVAGSHS---RNELH--VMHANEERPPTRQSGSKLCRV--CGDEIGLKENGELFVACHECGFPVCRPCYEYERSEG 77 (1050)
Q Consensus 5 ~~~~~~~g~~~---r~~~~--~~~~~~~~~~~~~~~~~~Cqi--Cgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG 77 (1050)
.+++||||||| |+|+| +|+++.+|+++++.+++.|.+ |+.+++.||+|++..+| ||+|+|||+||-++.++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 166 (1135)
T PLN02248 88 VSNSIFTGGFNSVTRAHLMDKVIESEVSHPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG 166 (1135)
T ss_pred cccceecCCCCccchhhhhhcccccccCCcccCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC
Confidence 57899999999 99999 999999999999999999998 99999999999999999 999999999999999996
Q ss_pred CCCCCCCccccccccCccccCCCCCCCCCccchhhhccCCCCCCCCccccccccCCCCCCCCCCcccCCCCCcccCCCCC
Q 001576 78 SQCCPGCNTRYKRHKGCARVAGDEEDNFDDDFEDEFKNHYDNQDHDQHHHVTTTRSENGDNNQNQFLNGPGSFAGSVAGK 157 (1050)
Q Consensus 78 ~~~CPqCkt~Ykr~kgsprv~gd~ee~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1050)
+.||+||++||.+ |+++++.|.-...+.++... .+.+.+.-.. .....++.. .+.++++|+
T Consensus 167 -~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~ 227 (1135)
T PLN02248 167 -GICPGCKEPYKVT--------DLDDEVPDESSGALPLPPPG-----GSKMDRRLSL---MKSNSLLMR--SQTGDFDHN 227 (1135)
T ss_pred -CCCCCCccccccc--------cccccccccccccccCCCCC-----Cccccccccc---ccccchhcc--CCCCCCCCc
Confidence 8999999999875 43333322111222221100 0111110000 000011111 224788999
Q ss_pred c--ccCCCC-CCcchhhhHhHHHHHHHhhhccccccCCCCCCCCCCCchhhhhhhcCCCeeEeecCCCCcchhHHHHHHH
Q 001576 158 D--FEGDKE-GYSSAEWQERVEKWKIRQEKRGLVTKDDGGNDQGDGDDDFLMAEARQPLWRKVPIPSSKINPYRIVIILR 234 (1050)
Q Consensus 158 ~--~~~~~~-~~g~~~w~~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~ 234 (1050)
+ ++++++ ||||+.|+++.. .|+++++ . ....+|+++++||+||+++++++|+|||++++++
T Consensus 228 ~w~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~-~-~~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~r 291 (1135)
T PLN02248 228 RWLFETKGTYGYGNAVWPKDDG--------------YGDDGGG-G-GPGEFMDKPWRPLTRKVKISAAILSPYRLLILIR 291 (1135)
T ss_pred eeeeecccccccccccCccccc--------------cCCCCCc-c-ccccccccCCCCceeeeecCcccccHHHHHHHHH
Confidence 9 899999 999999998632 1211111 1 1125799999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhhhhhhcCC-----CCCCCCCeeE
Q 001576 235 LFILAFFLRFRILTPAYDAFPLWIISVICEVWFAFSWILDQFPKWFPITRETYLDRLSIRFEREG-----EPNRLAPVDV 309 (1050)
Q Consensus 235 l~~l~~yl~~Ri~~~~~~~~~lw~~~~~~Ei~f~~~wil~q~~kw~Pv~R~t~~drL~~r~~~~~-----~~~~lp~VDv 309 (1050)
|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|.||+|||++|||.|+ ++++||+|||
T Consensus 292 lv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDv 371 (1135)
T PLN02248 292 LVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLCPINRATDLAVLKEKFETPSPSNPTGRSDLPGIDV 371 (1135)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhccccccccccccCHHHHHHHhccccccCCCCcccCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999998654 3678999999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCcccccccc
Q 001576 310 FVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEFYFSQK 389 (1050)
Q Consensus 310 fV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~yFs~k 389 (1050)
||||+||.||||++|+||||||||+|||+|||+|||||||+++||||||.|||+|||+||||||||+|||||||+||++|
T Consensus 372 FV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf~AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~ 451 (1135)
T PLN02248 372 FVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLTFEAMAEAASFARIWVPFCRKHDIEPRNPESYFSLK 451 (1135)
T ss_pred EeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHh---------------h---------------hcCCCcccccccCC
Q 001576 390 IDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVS---------------K---------------AQKKPEEGWVMQDG 439 (1050)
Q Consensus 390 ~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~---------------k---------------~~~vp~e~w~m~dg 439 (1050)
.|+++++.+|+|++|||+|||||||||+|||+|++ + ++|+|+++| |+||
T Consensus 452 ~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~~~~~rs~~~n~~~e~~~~~~~~~~~~~~~~e~~~~~~~~w-m~dg 530 (1135)
T PLN02248 452 RDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYNAREEIKAKKKQRESGGGDPSEPLKVPKATW-MADG 530 (1135)
T ss_pred CCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhhhccccccccchhHHHHhhhhhhhhccccccccccccccee-eccC
Confidence 99999999999999999999999999999999963 1 256799999 9999
Q ss_pred CCCCCCC--------CCCChhhHHhhhcCCC------------Cccc--cCCCCCcEEEEeccCCCCCCCCCccchhhHH
Q 001576 440 TPWPGNN--------TRDHPGMIQVYLGSEG------------ALDV--EGKELPRLVYVSREKRPGYNHHKKAGAMNAL 497 (1050)
Q Consensus 440 t~w~g~~--------~~dhp~iiqv~l~~~g------------~~d~--~~~~lP~lvYvsRekrpg~~hh~KAGalNal 497 (1050)
|+|||+| ++|||+||||||++++ ..|. .+++||+|||||||||||++||+||||||+|
T Consensus 531 t~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~e~~~g~~~~~~~~d~~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNAL 610 (1135)
T PLN02248 531 THWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMGSADDENLIDFTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNAL 610 (1135)
T ss_pred CcCCCcccCcccCCCCCCCcceeEEeccCCCcccccCcccccccccccccccccceeEEEecccCCCCCcccccchhhhH
Confidence 9999995 4699999999998654 1132 3448999999999999999999999999999
Q ss_pred HHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCccccCCCCCCcccchhhHHHHhhcccccCC
Q 001576 498 VRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGI 577 (1050)
Q Consensus 498 lrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~F~~id~~D~y~n~~~vFfdi~~~glDg~ 577 (1050)
+||||+|||||||||||||||+|||++||+||||||||+ |+++|||||||+|+|+|++|||+||++||||++|+|+||+
T Consensus 611 lRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~-g~~vAfVQFPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGl 689 (1135)
T PLN02248 611 VRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRG-GDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGL 689 (1135)
T ss_pred HHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCC-CCceEEEcCCcccCCCCCCCccCCcceeeeeeeecccccc
Confidence 999999999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred CCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccC
Q 001576 578 QGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRK 657 (1050)
Q Consensus 578 qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1050)
|||+||||||+|||+||||++||+.++.+ ++|++||+.++++++.....
T Consensus 690 qGP~YvGTGCffRR~ALYG~~pp~~~~~~--------~~~~~~~~~~~~~~~~~~~~----------------------- 738 (1135)
T PLN02248 690 QGPVYVGTGCLFRRIALYGFDPPRAKEHS--------GCFGSCKFTKKKKKETSASE----------------------- 738 (1135)
T ss_pred CCccccccCceeeehhhcCcCCccccccc--------cccccccccccccccccccc-----------------------
Confidence 99999999999999999999998654332 23455666554433211000
Q ss_pred CCCCccchhHhhhhccchhhhhhhhhhhhhhhhhhcCCchHHHhhhhh-hcCCCC-------------------CCCCch
Q 001576 658 GSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLK-EDGGLP-------------------EGTNST 717 (1050)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~sal~-e~GG~~-------------------~~~~~~ 717 (1050)
.. .++++++ + ..++.+.++++||+|..|+.|+.. +..|.+ ....++
T Consensus 739 -~~---~~~~~~~-----~-----~~~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1135)
T PLN02248 739 -PE---EQPDLED-----D-----DDLELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPSVKNGRPPGALTVPREPLDA 804 (1135)
T ss_pred -cc---ccccccc-----c-----chhhhhhhhhhhccchhhhhhhHHHhhcccccccccccccccccccccccccCCcH
Confidence 00 0111110 1 012456788999999999999843 222221 122366
Q ss_pred hHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecCCCccccccCCCCHHHHHHHhHhhhchh
Q 001576 718 SLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGS 797 (1050)
Q Consensus 718 ~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWA~G~ 797 (1050)
++++||++|+||+||++|+||+||||.|||+|||+.||++||++||||+|++|++.+|.|+||+|+.++++||+|||+|+
T Consensus 805 ~~l~eA~~V~sC~YE~~T~WG~evG~~YGSvTEDv~TGlrLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~ 884 (1135)
T PLN02248 805 ATVAEAISVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGS 884 (1135)
T ss_pred HHHHHHHhhcccccccCCchhhhcCeeecceechHHHHHHHHhcCCceEeCCCChHhhcCCCCCCHHHHHHHHHHHhhch
Confidence 89999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHhhccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcchhccchHHHHHHHHHHHHHHHHH
Q 001576 798 VEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTLPAICLLTGKFIIPTLNNLASIWFLALFLSIIVTG 877 (1050)
Q Consensus 798 lQil~~k~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~vs~~~~~~fi~lfls~~~~~ 877 (1050)
+||++++++|+++ .++|+++|||+|+++++||++++++++|+++|++||++|++++|..+..++++++.+++++++++
T Consensus 885 lQIf~sr~~Pll~--~~~Lsl~QRL~Yl~~~lypf~Slp~liY~llP~l~LLtGi~~~p~~~~~fl~yll~l~l~~~~~s 962 (1135)
T PLN02248 885 VEIFFSRNNALLA--SRRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIITITLCLLA 962 (1135)
T ss_pred HHHHhccCCcccc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999985 47999999999999999999999999999999999999999999876555555556678889999
Q ss_pred HhheeecCcccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCcCCCccc---cccceeeeccccchhHHHH
Q 001576 878 VLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKSAEDE---EFGELYLFKWTTLLIPPTT 954 (1050)
Q Consensus 878 lLe~rwsG~s~~~wWr~e~~W~I~~vsa~lfAv~~aLlk~L~g~~~~F~VTpKg~~~~---~~~~ly~f~ws~l~iP~~~ 954 (1050)
++|++|+|+++++||||||||+|.+++++++|++++++|+|++++++|+||+|..+++ .++++|+|+||++++|+++
T Consensus 963 llE~~wsGvsl~~WWrnQq~W~I~~tSA~L~A~l~aiLKvLggs~~~F~VTsK~~~~d~~~~~a~ly~f~wS~L~iP~tt 1042 (1135)
T PLN02248 963 VLEIKWSGITLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSAGDDEDDEFADLYIVKWTSLMIPPIT 1042 (1135)
T ss_pred HHHHhhccccHHHHhhhhheeeehhhHHHHHHHHHHHHHHhcCccccceeCCcccccccccccchheecCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987643 5688999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhheeecCC
Q 001576 955 LIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLLWVRIDPF 1034 (1050)
Q Consensus 955 Llilnlvaiv~Gi~r~i~~~~~~w~~l~~~l~~~~Wvlvnl~PflkgL~gR~~~~P~~v~~~s~lla~~~~~l~v~i~~~ 1034 (1050)
++++|++|+++|++|++.+.++.|+.+++++|+++|+++|+|||+||||||++|+||||++||++|++++|||||+|+||
T Consensus 1043 l~llNLvAivvGv~R~i~g~~~~~~~l~g~l~~s~Wvv~~lyPf~kGL~gR~gr~P~iv~v~s~ll~~~~sll~v~~~~~ 1122 (1135)
T PLN02248 1043 IMMVNLIAIAVGVSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLLSITISLLWVAISPP 1122 (1135)
T ss_pred HHHHHHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeehHHHHHHHHHHHHHHheEeccc
Confidence 99999999999999999887788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 001576 1035 LPK 1037 (1050)
Q Consensus 1035 ~~~ 1037 (1050)
+..
T Consensus 1123 ~~~ 1125 (1135)
T PLN02248 1123 SGA 1125 (1135)
T ss_pred cCc
Confidence 854
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=4.3e-221 Score=1922.50 Aligned_cols=718 Identities=73% Similarity=1.300 Sum_probs=683.2
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCccccc
Q 001576 307 VDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEFYF 386 (1050)
Q Consensus 307 VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~yF 386 (1050)
|||||||+||.||||++|+|||||+||+|||+|||+|||||||+++||||||.||++|||+||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcCCCCccc
Q 001576 387 SQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDV 466 (1050)
Q Consensus 387 s~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~~d~ 466 (1050)
+++.|+++++.+|+|++|||+|||||||||+|||+++++.+++|+++|+|+||++|||++++|||+||||+++++|+.|.
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEec
Q 001576 467 EGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQF 546 (1050)
Q Consensus 467 ~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~ 546 (1050)
+|++||+|||||||||||++||+||||||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCcccchhhHHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCcc
Q 001576 547 PQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRK 626 (1050)
Q Consensus 547 PQ~F~~id~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~ 626 (1050)
||+|+|+|+||+|+|++++||+++|+|+||+|||+||||||+|||+||||++||...+.++.++ ++|+||++++|
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~-----~~~~~c~~~~k 315 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTC-----CCCSCCFGRRK 315 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCcce-----eeeecccCCcc
Confidence 9999999999999999999999999999999999999999999999999999998777665544 34455555544
Q ss_pred ccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhhhhcCCchHHHhhhhhh
Q 001576 627 SKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKE 706 (1050)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~sal~e 706 (1050)
+++.++.. +++..++ .+++.+++++++++|++++.++ +++..+++++|+++||+|++|++|+.++
T Consensus 316 ~~~~~~~~-----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~FG~S~~fi~S~~~~ 380 (720)
T PF03552_consen 316 KKKSKKKP-----------KKRASKR---RESSSPIFALEDIEEGAEGSDE-ERSSLMSQKELEKKFGQSPEFIASTLMA 380 (720)
T ss_pred cccccccc-----------hhccccc---cccccccccccccccccccchh-hhhhcchhHHHHHHhcCCHHHHHHHHHH
Confidence 44332221 1111122 5677899999999999887554 7889999999999999999999999999
Q ss_pred cCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecCCCccccccCCCCHHHH
Q 001576 707 DGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDR 786 (1050)
Q Consensus 707 ~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~af~G~aP~tl~~~ 786 (1050)
.|+.+.+.+++++++||+||+||+||++|+|||||||+||++|||+.||++||++||||+||+|+++||.|.||+|+.+.
T Consensus 381 ~~~~~~~~~~~~~L~EA~~V~sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~ 460 (720)
T PF03552_consen 381 QGGVPRSPSPASLLEEAIHVASCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDR 460 (720)
T ss_pred hcCCCCCCChHHHHHHHHHHhcCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhhchhHHHHHhhccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcchhccchHHHHHH
Q 001576 787 LHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTLPAICLLTGKFIIPTLNNLASIWF 866 (1050)
Q Consensus 787 l~QR~RWA~G~lQil~~k~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~vs~~~~~~f 866 (1050)
+.|++|||.|++||+++||||+|+|+.++|+++||++|++.++|+++|+|.++|+++|++||++|++++|++++.++++|
T Consensus 461 L~Q~~RWA~GslEI~fSr~~Pl~~g~~~rL~~lQrLaY~~~~~ypl~Sipll~Y~~lPalcLLtG~~i~Pk~s~~~~~~f 540 (720)
T PF03552_consen 461 LHQVKRWATGSLEIFFSRHCPLWYGYGGRLKFLQRLAYLNYMLYPLTSIPLLCYCFLPALCLLTGIFIFPKVSSPWFIYF 540 (720)
T ss_pred ceeeeeEeeeeEeeehhcCCchhccCCCCCcHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhCCCcccCccccchhHHH
Confidence 99999999999999999999999987799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhheeecCcccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCcCCCc--cccccceeeec
Q 001576 867 LALFLSIIVTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKSAE--DEEFGELYLFK 944 (1050)
Q Consensus 867 i~lfls~~~~~lLe~rwsG~s~~~wWr~e~~W~I~~vsa~lfAv~~aLlk~L~g~~~~F~VTpKg~~--~~~~~~ly~f~ 944 (1050)
+++|+++++++++|++|+|+++++||||||||+|.++++|+||++++++|+|++++++|+||+|..+ ++++.++|+|+
T Consensus 541 ~~lf~~~~~~~llE~~wsG~si~~WWrnQq~W~I~~tSa~LfAvl~~iLK~lg~s~t~F~VTsK~~dde~~~~~ely~f~ 620 (720)
T PF03552_consen 541 LALFVSIYAYSLLEFRWSGVSIREWWRNQQFWMIGGTSAHLFAVLQGILKVLGGSETSFTVTSKVSDDEDDKYAELYIFK 620 (720)
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHhhcccceeeehhhHHHHHHHHHHHHHHHcCCccceeeccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999876 44578899999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Q 001576 945 WTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIF 1024 (1050)
Q Consensus 945 ws~l~iP~~~Llilnlvaiv~Gi~r~i~~~~~~w~~l~~~l~~~~Wvlvnl~PflkgL~gR~~~~P~~v~~~s~lla~~~ 1024 (1050)
||++++|+++|+++|++|+++|+++++++++++|+++++++|+++|+++|+|||+||||||++|+||||++||++||++|
T Consensus 621 wS~LfiP~tTllilNLva~v~Gi~r~i~~g~~~~g~l~g~lf~~~wVvv~lyPf~kGL~~R~~r~P~~v~v~S~lla~i~ 700 (720)
T PF03552_consen 621 WSPLFIPPTTLLILNLVAFVVGISRAINSGYGSWGPLLGQLFFSFWVVVHLYPFLKGLFGRKDRIPTSVIVWSVLLASIF 700 (720)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhhHHHHhhhcccCCcceeehHHHHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HhhheeecCCCCCCCCCccc
Q 001576 1025 SLLWVRIDPFLPKQKGPLLK 1044 (1050)
Q Consensus 1025 ~~l~v~i~~~~~~~~~~~~~ 1044 (1050)
+||||+||||+++++||+++
T Consensus 701 ~llwv~i~~~~~~~~~~~~~ 720 (720)
T PF03552_consen 701 SLLWVRIDPFLAKTTGPDLK 720 (720)
T ss_pred HHHheecccCcCCCCCCCCC
Confidence 99999999999999999875
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=4.8e-203 Score=1773.04 Aligned_cols=726 Identities=34% Similarity=0.625 Sum_probs=656.4
Q ss_pred hhcCCCeeEeecCCCCcchhHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHHHhhccccccccccch
Q 001576 208 EARQPLWRKVPIPSSKINPYRIVIILRLFILAFFLRFRILTPAYDAFPLWIISVICEVWFAFSWILDQFPKWFPITRETY 287 (1050)
Q Consensus 208 ~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~yl~~Ri~~~~~~~~~lw~~~~~~Ei~f~~~wil~q~~kw~Pv~R~t~ 287 (1050)
.+.+||+++++++++. ||++.+++++++++||+||++++++++ ++|+++++||+||+|+|+|+|++||+|++|.|+
T Consensus 6 ~~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~ 81 (756)
T PLN02190 6 SSLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPY 81 (756)
T ss_pred CCCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCC
Confidence 3457999999999985 899999999999999999999999888 689999999999999999999999999999999
Q ss_pred hhhhhhhhhcCCCCCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhh
Q 001576 288 LDRLSIRFEREGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARR 367 (1050)
Q Consensus 288 ~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~ 367 (1050)
||||++|++ +||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||+|+||||||.|||+|||+
T Consensus 82 p~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~ 155 (756)
T PLN02190 82 PDRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKI 155 (756)
T ss_pred cHHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhh
Confidence 999999984 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCC--CCCCCC
Q 001576 368 WVPFCKKYIIEPRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDG--TPWPGN 445 (1050)
Q Consensus 368 WvPFCkk~~iepR~Pe~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg--t~w~g~ 445 (1050)
||||||||||||||||+||+++.+ ++..++|++|||+|||||||||+||++.. +...|.++|+ .+|+++
T Consensus 156 WvPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~ 226 (756)
T PLN02190 156 WVPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNT 226 (756)
T ss_pred hcccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCC
Confidence 999999999999999999998643 33568999999999999999999999864 3466777655 789998
Q ss_pred CCCCChhhHHhhhcCCCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHH
Q 001576 446 NTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAV 525 (1050)
Q Consensus 446 ~~~dhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~L 525 (1050)
.++|||+||||+++++|+ +.+|++||+|||||||||||++||+||||||+|+||||+|||||||||||||||+|||+++
T Consensus 227 ~~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~ 305 (756)
T PLN02190 227 KPNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVV 305 (756)
T ss_pred CCCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHH
Confidence 999999999999999775 4579999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCcCCC-ccEEEEecCccccCCCCCCcccchhhHHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCC
Q 001576 526 REAMCFLMDPQLG-KKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEK 604 (1050)
Q Consensus 526 r~amcf~~Dp~~g-~~v~~VQ~PQ~F~~id~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTGc~fRR~ALyg~~p~~~~~ 604 (1050)
|+||||||||+.+ +++|||||||+|+ |+|+||++||||++|+|+||+|||+||||||+|||+||||++||...+
T Consensus 306 r~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~ 380 (756)
T PLN02190 306 RQAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLED 380 (756)
T ss_pred HHhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCcccccc
Confidence 9999999999744 5899999999998 889999999999999999999999999999999999999998864321
Q ss_pred CCCCCCCCCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhh
Q 001576 605 RPKMTCDCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLM 684 (1050)
Q Consensus 605 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1050)
.... . . .. ++ ...
T Consensus 381 ~~~~------------------------~----------------------~---~~-----------------~~-~~~ 393 (756)
T PLN02190 381 DGSL------------------------S----------------------S---VA-----------------TR-EFL 393 (756)
T ss_pred cccc------------------------c----------------------c---cc-----------------cc-ccc
Confidence 1000 0 0 00 00 022
Q ss_pred hhhhhhhhcCCchHHHhhhhhhcCCCCC-CCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCc
Q 001576 685 SQKNFEKRFGQSPVFIASTLKEDGGLPE-GTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGW 763 (1050)
Q Consensus 685 ~~~~~~~~fG~s~~f~~sal~e~GG~~~-~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GW 763 (1050)
++.+++++||+|+.|++|++++..+-+. ..+.+++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||
T Consensus 394 ~~~~~~~~fg~s~~f~~s~~~~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGW 473 (756)
T PLN02190 394 AEDSLAREFGNSKEMVKSVVDALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGW 473 (756)
T ss_pred chhhhhhhcCCcHHHHHHHHHHhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCcccceeechHHHHHHHHccCC
Confidence 3456778999999999999876644332 334578999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCccccccCCCCHHHHHHHhHhhhchhHHHHHhhccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHH
Q 001576 764 KSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTL 843 (1050)
Q Consensus 764 rsvY~~p~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~~k~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~sl~~liylll 843 (1050)
||+||+|+++||.|.+|+++.++++||+|||+|++|++++++||+++++.++|++.||++|++.++ |++++|+++|+++
T Consensus 474 rSvY~~p~~~AFlG~aP~~l~~~L~Q~~RWa~G~lqI~fsr~nPl~~g~~~~L~l~QRLaYl~~~~-~~~sip~l~Y~~l 552 (756)
T PLN02190 474 TSSYISPDPPAFLGSMPPGGPEAMVQQRRWATGLIEVLFNKQSPLIGMFCRKIRFRQRLAYLYVFT-CLRSIPELIYCLL 552 (756)
T ss_pred ceEecCCCchhhcCcCCCChHHHhhhhhhHhhhhHHHHHhcCCCceeccCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976678999999999999988 9999999999999
Q ss_pred HHHHHHhCCcchhccchHHHHHHHHHHHHHHHHHHhheeecCcccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001576 844 PAICLLTGKFIIPTLNNLASIWFLALFLSIIVTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDT 923 (1050)
Q Consensus 844 P~l~Ll~G~~iip~vs~~~~~~fi~lfls~~~~~lLe~rwsG~s~~~wWr~e~~W~I~~vsa~lfAv~~aLlk~L~g~~~ 923 (1050)
|++||++|++++|.. +++++++++++++.+++++|++|+|.++++||||||||+|+++|+|+||++++++|+|+++++
T Consensus 553 P~l~Ll~g~~i~P~~--~~~~~~~~l~~~~~~~~l~E~~~sG~s~~~WWnnqr~w~I~~~sa~l~a~~~~~lK~lg~s~~ 630 (756)
T PLN02190 553 PAYCLLHNSALFPKG--VYLGIIVTLVGMHCLYTLWEFMSLGFSVQSWYVSQSFWRIKATSSWLFSIQDIILKLLGISKT 630 (756)
T ss_pred HHHHHHcCCccccCc--cHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHhhhheEEeecchHHHHHHHHHHHHHhccccc
Confidence 999999999999975 456677888888999999999999999999999999999999999999999999999999999
Q ss_pred CeeeCcCCCc-------------c--cc--ccceeeeccccchhHHHHHHHHHHHHHHHHHHHhHh---cCCCCCcchHH
Q 001576 924 NFTVTSKSAE-------------D--EE--FGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAIN---NGYGSWGPLFG 983 (1050)
Q Consensus 924 ~F~VTpKg~~-------------~--~~--~~~ly~f~ws~l~iP~~~Llilnlvaiv~Gi~r~i~---~~~~~w~~l~~ 983 (1050)
+|+||+|..+ + ++ .+++|+|+||++++|+++++++|++|++.|+++++. ++.+.|+ .++
T Consensus 631 ~F~vTsK~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~S~lfiP~tti~~~Nl~a~~~g~~~~~~~~~s~~~~~~-~l~ 709 (756)
T PLN02190 631 VFIVTKKTMPETKSGSGSGPSQGEDDGPNSDSGKFEFDGSLYFLPGTFIVLVNLAALAGFLVGLQRSSYSHGGGGS-GLA 709 (756)
T ss_pred eEEEeeccccccccccccccccccccchhhhcceeEecceehHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcccc-cHH
Confidence 9999999643 1 11 257899999999999999999999999988877643 3334555 459
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCCcchHHHHHHHHHHHHHhhhe
Q 001576 984 KLFFAFWVIVHLYPFLKGLMGRQ-NRTPTIVVLWSVLLASIFSLLWV 1029 (1050)
Q Consensus 984 ~l~~~~Wvlvnl~PflkgL~gR~-~~~P~~v~~~s~lla~~~~~l~v 1029 (1050)
++++++|+++|++||+||||||. +|+|++|+++|++|+.+|+++.|
T Consensus 710 q~~~~~~vv~~~~P~~~gl~~kdkg~iP~s~~~~s~~l~~~f~~~~~ 756 (756)
T PLN02190 710 EACGCILVVMLFLPFLKGLFEKGKYGIPLSTLSKAAFLAVLFVVFSV 756 (756)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999775 59999999999999999998865
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=1.3e-194 Score=1710.09 Aligned_cols=706 Identities=36% Similarity=0.692 Sum_probs=651.4
Q ss_pred hhcCCCeeEeecCCCCcchhHHHHHHHHHHHHHHHHHHhhccCCCc-hhHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 001576 208 EARQPLWRKVPIPSSKINPYRIVIILRLFILAFFLRFRILTPAYDA-FPLWIISVICEVWFAFSWILDQFPKWFPITRET 286 (1050)
Q Consensus 208 ~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~yl~~Ri~~~~~~~-~~lw~~~~~~Ei~f~~~wil~q~~kw~Pv~R~t 286 (1050)
...+||+++++++++. +||+++++++++++++|+||+++.+.+. .|+|+++++||+||+|+|+|+|++||+||+|.|
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 4567999999999886 6999999999999999999999977665 789999999999999999999999999999999
Q ss_pred hhhhhhhhhhcCCCCCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhh
Q 001576 287 YLDRLSIRFEREGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFAR 366 (1050)
Q Consensus 287 ~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~ 366 (1050)
|+|||+++++ .++||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||+|+||||||.|||+|||
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999997664 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCCcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCC-----CC
Q 001576 367 RWVPFCKKYIIEPRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDG-----TP 441 (1050)
Q Consensus 367 ~WvPFCkk~~iepR~Pe~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg-----t~ 441 (1050)
+||||||||+|||||||+||+++. ++|++|||+|||||||||+|||+++++ +++|++ |.|.++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~~--------~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSNS--------HSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccCC--------CccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 999999999999999999999983 468899999999999999999999966 899887 655444 78
Q ss_pred CCCCC-CCCChhhHHhhhcCCCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCC
Q 001576 442 WPGNN-TRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLN 520 (1050)
Q Consensus 442 w~g~~-~~dhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~ 520 (1050)
|++|. ++|||+||||+++++++.|.+|++||+|||||||||||++||+||||||+++||||++||||||||||||||+|
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n 312 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSN 312 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCC
Confidence 98876 68999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhcCcCCCccEEEEecCccccCCCCCCcccchhhHHHHhhcccccCCCCceeeccCceehhhhhcCCCCC
Q 001576 521 NSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPP 600 (1050)
Q Consensus 521 ~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~F~~id~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTGc~fRR~ALyg~~p~ 600 (1050)
||++||+|||||+||+.++++|||||||+|+|++++|+|+|++++|||++|+|+||+|||+||||||+|||+||||..+.
T Consensus 313 ~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~ 392 (734)
T PLN02893 313 DPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSS 392 (734)
T ss_pred chhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997431
Q ss_pred CCCCCCCCCCCCCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhh
Q 001576 601 VSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEK 680 (1050)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1050)
... ++++|
T Consensus 393 ~~~--------------------------------------------------------------~~~~~---------- 400 (734)
T PLN02893 393 LIL--------------------------------------------------------------PEIPE---------- 400 (734)
T ss_pred ccc--------------------------------------------------------------hhhhh----------
Confidence 000 00000
Q ss_pred hhhhhhhhhhhhcCCchHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHh
Q 001576 681 SSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHC 760 (1050)
Q Consensus 681 ~~~~~~~~~~~~fG~s~~f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~ 760 (1050)
+++ .++...+...+++++||++|+||.||++|+||+||||.|+|+|||+.||++||+
T Consensus 401 ------------~~~-----------~~~~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~ 457 (734)
T PLN02893 401 ------------LNP-----------DHLVDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQC 457 (734)
T ss_pred ------------ccc-----------ccccccccchHHHHHHhhhccccccccCCccccccceEeccccccHHHHHHHHh
Confidence 000 111233445678999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCccccccCCCCHHHHHHHhHhhhchhHHHHHhhccccccccCCCCCcccchhhhhhhhhhhhHHHHHHH
Q 001576 761 RGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAY 840 (1050)
Q Consensus 761 ~GWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~~k~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~sl~~liy 840 (1050)
+|||++|++|++++|.|++|+|+.++++||+|||+|++|++++++||+++|. ++|++.||++|++.++||++++++++|
T Consensus 458 ~GWrSvY~~p~~~af~G~aP~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~-~~L~~~Qrl~Y~~~~~~~~~slp~liY 536 (734)
T PLN02893 458 EGWKSIFCNPKRPAFLGDSPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGV-KSIGLLMGLGYAHYAFWPIWSIPITIY 536 (734)
T ss_pred cCCcEEecCCCchhhccCCCCCHHHHHHHHHHHHhhhHHHHhhccCchhhcc-cCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999998888899999999999999999999999999999999999764 789999999999999999999999999
Q ss_pred HHHHHHHHHhCCcchhccchHHHHHHHHHHHHHHHHHHhheeecCcccccccccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 001576 841 CTLPAICLLTGKFIIPTLNNLASIWFLALFLSIIVTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAG 920 (1050)
Q Consensus 841 lllP~l~Ll~G~~iip~vs~~~~~~fi~lfls~~~~~lLe~rwsG~s~~~wWr~e~~W~I~~vsa~lfAv~~aLlk~L~g 920 (1050)
+++|++||++|++++|.++.+++++++.+++++++++++|++|+|.++++|||+||+|+|.++++++++++++++|.|++
T Consensus 537 ~~~P~l~Ll~g~~i~p~~s~~~f~~yi~l~~s~~~~~~lE~~~sG~t~~~WWn~qr~w~I~~~ss~l~a~l~~iLk~lg~ 616 (734)
T PLN02893 537 AFLPQLALLNGVSIFPKASDPWFFLYIFLFLGAYGQDLLDFLLSGGTIQRWWNDQRMWMIRGLSSFLFGLVEFLLKTLGI 616 (734)
T ss_pred HHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHHHHHHhccCccHhhhcchheeeehHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999988888888889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeCcCCCcccc---c-cceeeecc-ccchhHHHHHHHHHHHHHHHHHHHhHhcCCCCCcchHHHHHHHHHHHHHH
Q 001576 921 VDTNFTVTSKSAEDEE---F-GELYLFKW-TTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHL 995 (1050)
Q Consensus 921 ~~~~F~VTpKg~~~~~---~-~~ly~f~w-s~l~iP~~~Llilnlvaiv~Gi~r~i~~~~~~w~~l~~~l~~~~Wvlvnl 995 (1050)
++.+|+||+|+.++++ + .++|+|+| +++++|+++++++|++|+++|+++++.+ ..|+.+++++++++|+++++
T Consensus 617 s~~~F~VT~K~~~~~~~~~y~~~~f~f~~~spl~ip~ttl~llNl~a~v~Gi~~~~~~--~~~~~~~~~~~~~~~~v~~~ 694 (734)
T PLN02893 617 STFGFNVTSKVVDEEQSKRYEQGIFEFGVSSPMFLPLTTAAIINLVSFLWGIAQIFRQ--RNLEGLFLQMFLAGFAVVNC 694 (734)
T ss_pred cCCceeecCCCcccccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHH
Confidence 9999999999876432 2 47999995 8899999999999999999999999875 35778899999999999999
Q ss_pred HHHHHHHhcCCC--CCcchHHHHHHHHHHHHHhh
Q 001576 996 YPFLKGLMGRQN--RTPTIVVLWSVLLASIFSLL 1027 (1050)
Q Consensus 996 ~PflkgL~gR~~--~~P~~v~~~s~lla~~~~~l 1027 (1050)
+||++||++|++ |+|++|++||++||.+++++
T Consensus 695 ~P~~~gl~~r~dkg~~P~~v~~~s~~l~~~~~~~ 728 (734)
T PLN02893 695 WPIYEAMVLRTDDGKLPVKITLISIVLAWALYLA 728 (734)
T ss_pred HHHHHHHhccCCCCCCCccHHHHHHHHHHHHHHH
Confidence 999999999986 99999999999999888764
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=2e-65 Score=622.68 Aligned_cols=491 Identities=28% Similarity=0.404 Sum_probs=382.0
Q ss_pred HHH-HHHHHHHHHHHHHHHhhccCCCc----hhHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhhhhhhcCCCCC
Q 001576 228 RIV-IILRLFILAFFLRFRILTPAYDA----FPLWIISVICEVWFAFSWILDQFPKWFPITRETYLDRLSIRFEREGEPN 302 (1050)
Q Consensus 228 R~~-~~~~l~~l~~yl~~Ri~~~~~~~----~~lw~~~~~~Ei~f~~~wil~q~~kw~Pv~R~t~~drL~~r~~~~~~~~ 302 (1050)
|++ +++.+++.+.|++||++.+++.. ..+.++++++|+++.++.++..+..+.|.+|...+ .+..++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPVP--------LPLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccC--------CCCCcc
Confidence 654 45666678999999999987643 23467899999999999888888888888875422 122456
Q ss_pred CCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCc
Q 001576 303 RLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAP 382 (1050)
Q Consensus 303 ~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~P 382 (1050)
.+|.|||+||||| |++.++.+|+.+++++|||.+|+.|||+|||+.+-|.....+++
T Consensus 129 ~~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~-------------------- 185 (713)
T TIGR03030 129 EWPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQ-------------------- 185 (713)
T ss_pred cCCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhh--------------------
Confidence 7999999999999 99999999999999999999999999999999875432221111
Q ss_pred ccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcCCC
Q 001576 383 EFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEG 462 (1050)
Q Consensus 383 e~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g 462 (1050)
.+. ++..++ +.+++++
T Consensus 186 --------------------~~~---~~~~~~----~~~l~~~------------------------------------- 201 (713)
T TIGR03030 186 --------------------AEA---AQRREE----LKEFCRK------------------------------------- 201 (713)
T ss_pred --------------------hhh---hhhHHH----HHHHHHH-------------------------------------
Confidence 000 000112 2223211
Q ss_pred CccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhh-cCcCCCccE
Q 001576 463 ALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGKKL 541 (1050)
Q Consensus 463 ~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~-~Dp~~g~~v 541 (1050)
.++.|+.|++ ++|+||||||++++. ++||||+++||||+ ++|++|++++++| .|| ++
T Consensus 202 ---------~~v~yi~r~~----n~~~KAgnLN~al~~----a~gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp----~v 259 (713)
T TIGR03030 202 ---------LGVNYITRPR----NVHAKAGNINNALKH----TDGELILIFDADHV-PTRDFLQRTVGWFVEDP----KL 259 (713)
T ss_pred ---------cCcEEEECCC----CCCCChHHHHHHHHh----cCCCEEEEECCCCC-cChhHHHHHHHHHHhCC----CE
Confidence 0279999988 788999999999995 79999999999998 7999999999988 588 89
Q ss_pred EEEecCccccCCCCC-------CcccchhhHHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCC
Q 001576 542 CYVQFPQRFDGIDRH-------DRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWP 614 (1050)
Q Consensus 542 ~~VQ~PQ~F~~id~~-------D~y~n~~~vFfdi~~~glDg~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~ 614 (1050)
++||+||.|+|.|+. +++.+++..||..+++|+|.+++++++||++++||+||.
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~------------------- 320 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREALD------------------- 320 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHHH-------------------
Confidence 999999999998753 345678889999999999999999999999999999871
Q ss_pred CCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhhhhcC
Q 001576 615 SWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFG 694 (1050)
Q Consensus 615 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG 694 (1050)
T Consensus 321 -------------------------------------------------------------------------------- 320 (713)
T TIGR03030 321 -------------------------------------------------------------------------------- 320 (713)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecCCCcc
Q 001576 695 QSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPA 774 (1050)
Q Consensus 695 ~s~~f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~a 774 (1050)
++||+++ ++++||++++++|+++||+++|++... +
T Consensus 321 -----------~iGGf~~---------------------------------~~vtED~~l~~rL~~~G~~~~y~~~~~-~ 355 (713)
T TIGR03030 321 -----------EIGGIAG---------------------------------ETVTEDAETALKLHRRGWNSAYLDRPL-I 355 (713)
T ss_pred -----------HcCCCCC---------------------------------CCcCcHHHHHHHHHHcCCeEEEecccc-c
Confidence 3577654 589999999999999999999996543 3
Q ss_pred ccccCCCCHHHHHHHhHhhhchhHHHHHhhccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcc
Q 001576 775 FKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTLPAICLLTGKFI 854 (1050)
Q Consensus 775 f~G~aP~tl~~~l~QR~RWA~G~lQil~~k~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~i 854 (1050)
+|++|+|++++++||.||++|++|+++. .+|++ .++|++.||++|+++++||+.++++++|+++|++++++|+.+
T Consensus 356 -~g~~p~sl~~~~~Qr~RWa~G~~qi~~~-~~pl~---~~gl~~~qrl~y~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~ 430 (713)
T TIGR03030 356 -AGLAPETLSGHIGQRIRWAQGMMQIFRL-DNPLL---KRGLSFPQRLCYLNAMLFWFFPLPRVIFLTAPLAYLFFGLNI 430 (713)
T ss_pred -cccCCCCHHHHHHHHHHHhcChHHHHhh-hCccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 8999999999999999999999999975 48997 689999999999999999999999999999999999999998
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHhhee-ecCcccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCcCCCc
Q 001576 855 IPTLNNLASIWFLALFLSIIVTGVLELR-WSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKSAE 933 (1050)
Q Consensus 855 ip~vs~~~~~~fi~lfls~~~~~lLe~r-wsG~s~~~wWr~e~~W~I~~vsa~lfAv~~aLlk~L~g~~~~F~VTpKg~~ 933 (1050)
++..... +++.++++++.+++.+. ..|.....||+ |.|.. +.+ .+.+...+.+.+++++.+|+||||++.
T Consensus 431 ~~~~~~~----~~~~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~-~~~~~~~~~~~~~~~~~~F~VT~Kg~~ 501 (713)
T TIGR03030 431 FVASALE----ILAYALPHMLHSLLTNSYLFGRVRWPFWS-EVYET---VLA-VYLLPPVLVTLLNPKKPKFNVTPKGEL 501 (713)
T ss_pred eeCCHHH----HHHHHHHHHHHHHHHHHHHcCCeecchHH-HHHHH---HHH-HHHHHHHHHHHhCcCCCCceecCCCcc
Confidence 8764221 12222344444444322 23444456774 44332 222 233345566678889999999999976
Q ss_pred cccccceeeeccccchhHHHHHHHHHHHHHHHHHHHhHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 001576 934 DEEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLM 1003 (1050)
Q Consensus 934 ~~~~~~ly~f~ws~l~iP~~~Llilnlvaiv~Gi~r~i~~~~~~w~~l~~~l~~~~Wvlvnl~PflkgL~ 1003 (1050)
.+.. ..+++++|+++++++|++|+++|+++.+..+. ...+.+++.+|.++|++-+..++.
T Consensus 502 ~~~~------~~~~~~~p~~~l~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~n~~~~~~~~~ 561 (713)
T TIGR03030 502 LDED------YFSPLSRPYLILFALILAGLAFGLYRIYGYPI----ERGVLLVVLGWNLLNLILLGAALA 561 (713)
T ss_pred cccc------ccchHHHHHHHHHHHHHHHHHHHHHHHhcCcc----ccchhhHHHHHHHHHHHHHHHHHH
Confidence 3321 11257899999999999999999999865432 234568999999999998887773
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=1.1e-65 Score=626.11 Aligned_cols=472 Identities=26% Similarity=0.428 Sum_probs=373.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCc----hhHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhhhhhhcCCCCCCCC
Q 001576 230 VIILRLFILAFFLRFRILTPAYDA----FPLWIISVICEVWFAFSWILDQFPKWFPITRETYLDRLSIRFEREGEPNRLA 305 (1050)
Q Consensus 230 ~~~~~l~~l~~yl~~Ri~~~~~~~----~~lw~~~~~~Ei~f~~~wil~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~lp 305 (1050)
++++.+++.+.|++||++.+++.. ..+.++++++|+++.++.++..+..+.|..|.+.+ .+...+.+|
T Consensus 189 l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~~--------~~~~~~~~P 260 (852)
T PRK11498 189 LIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVP--------LPKDMSLWP 260 (852)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC--------CCcccCCCC
Confidence 556778889999999999987643 34567899999999999999888888888775321 122345789
Q ss_pred CeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCcccc
Q 001576 306 PVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEFY 385 (1050)
Q Consensus 306 ~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~y 385 (1050)
.|||+||||| ||+.++.+|+.+++++|||.+|+.|||+|||+++ |+.++|+
T Consensus 261 ~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D-------~t~~la~------------------- 311 (852)
T PRK11498 261 TVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGRE-------EFRQFAQ------------------- 311 (852)
T ss_pred cEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCCh-------HHHHHHH-------------------
Confidence 9999999999 9999999999999999999999999999999987 3322221
Q ss_pred cccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcCCCCcc
Q 001576 386 FSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALD 465 (1050)
Q Consensus 386 Fs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~~d 465 (1050)
+
T Consensus 312 ---------------------------------------~---------------------------------------- 312 (852)
T PRK11498 312 ---------------------------------------E---------------------------------------- 312 (852)
T ss_pred ---------------------------------------H----------------------------------------
Confidence 0
Q ss_pred ccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhh-cCcCCCccEEEE
Q 001576 466 VEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGKKLCYV 544 (1050)
Q Consensus 466 ~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~-~Dp~~g~~v~~V 544 (1050)
.++.|+.|++ +.|+||||+|++++. ++||||+++||||+ +.+++|+++|++| .|| ++|+|
T Consensus 313 ------~~v~yI~R~~----n~~gKAGnLN~aL~~----a~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP----~VglV 373 (852)
T PRK11498 313 ------VGVKYIARPT----HEHAKAGNINNALKY----AKGEFVAIFDCDHV-PTRSFLQMTMGWFLKDK----KLAMM 373 (852)
T ss_pred ------CCcEEEEeCC----CCcchHHHHHHHHHh----CCCCEEEEECCCCC-CChHHHHHHHHHHHhCC----CeEEE
Confidence 0268999877 678999999999995 79999999999997 7999999999865 788 89999
Q ss_pred ecCccccCCCCCC-------cccchhhHHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCC
Q 001576 545 QFPQRFDGIDRHD-------RYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWC 617 (1050)
Q Consensus 545 Q~PQ~F~~id~~D-------~y~n~~~vFfdi~~~glDg~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~ 617 (1050)
|+||.|+|.|+.+ .+.+++..||+..++|.|++++++++||++++||+||
T Consensus 374 Qtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaL----------------------- 430 (852)
T PRK11498 374 QTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPL----------------------- 430 (852)
T ss_pred EcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHH-----------------------
Confidence 9999999987642 2467788999999999999999999999999999887
Q ss_pred cccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhhhhcCCch
Q 001576 618 CCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSP 697 (1050)
Q Consensus 618 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~ 697 (1050)
T Consensus 431 -------------------------------------------------------------------------------- 430 (852)
T PRK11498 431 -------------------------------------------------------------------------------- 430 (852)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecCCCccccc
Q 001576 698 VFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKG 777 (1050)
Q Consensus 698 ~f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~af~G 777 (1050)
+++||+++ +++|||++++++||++||+++|+++... .|
T Consensus 431 -------eeVGGfd~---------------------------------~titED~dlslRL~~~Gyrv~yl~~~~a--~g 468 (852)
T PRK11498 431 -------DEIGGIAV---------------------------------ETVTEDAHTSLRLHRRGYTSAYMRIPQA--AG 468 (852)
T ss_pred -------HHhcCCCC---------------------------------CccCccHHHHHHHHHcCCEEEEEeccce--eE
Confidence 24688775 5899999999999999999999965443 79
Q ss_pred cCCCCHHHHHHHhHhhhchhHHHHHhhccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcchhc
Q 001576 778 SAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTLPAICLLTGKFIIPT 857 (1050)
Q Consensus 778 ~aP~tl~~~l~QR~RWA~G~lQil~~k~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~ 857 (1050)
++|+|++++++||.||++|++|+++. ++|++ .++|++.||++|+++++||+.+++.++|+++|++|+++|+.++..
T Consensus 469 laPesl~~~~~QR~RWarG~lQi~r~-~~pl~---~~gL~~~qRl~y~~~~l~~l~g~~~l~~l~~Pl~~l~~gi~~i~a 544 (852)
T PRK11498 469 LATESLSAHIGQRIRWARGMVQIFRL-DNPLT---GKGLKLAQRLCYANAMLHFLSGIPRLIFLTAPLAFLLLHAYIIYA 544 (852)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHH-hChhc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChheeC
Confidence 99999999999999999999999974 68997 789999999999999999999999999999999999999887743
Q ss_pred cchHHHHHHHHHHHHHHHHHHhheee-cCcccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCcCCCcccc
Q 001576 858 LNNLASIWFLALFLSIIVTGVLELRW-SGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKSAEDEE 936 (1050)
Q Consensus 858 vs~~~~~~fi~lfls~~~~~lLe~rw-sG~s~~~wWr~e~~W~I~~vsa~lfAv~~aLlk~L~g~~~~F~VTpKg~~~~~ 936 (1050)
... . ++++++++++...+...| +|.....||+ |. +..+.++.++. ..+...+++++.+|+||+|++..+.
T Consensus 545 ~~~---~-i~~y~lP~~~~~~l~~~~~~g~~r~~~ws-ei---ye~v~a~~l~~-~~~~~ll~p~~~~F~VTpKg~~~~~ 615 (852)
T PRK11498 545 PAL---M-IALFVLPHMIHASLTNSRIQGKYRHSFWS-EI---YETVLAWYIAP-PTTVALFNPHKGKFNVTAKGGLVEE 615 (852)
T ss_pred ChH---H-HHHHHHHHHHHHHHHHHHhcCcchHhHHH-HH---HHHHHHHHHHH-HHHHHHcCccCCCcccCCCCccccc
Confidence 221 1 122223333333333322 2332334442 32 33333443332 3344467889999999999976432
Q ss_pred ccceeeeccccchhHHHHHHHHHHHHHHHHHHHhHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 001576 937 FGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGL 1002 (1050)
Q Consensus 937 ~~~ly~f~ws~l~iP~~~Llilnlvaiv~Gi~r~i~~~~~~w~~l~~~l~~~~Wvlvnl~PflkgL 1002 (1050)
. .|+|. ++.|+++++++|++|+++|+++.+.+.. ....+.+++++|+++|++-+..++
T Consensus 616 ~----~~~~~-~~~P~~~L~~L~l~gl~~g~~r~~~~~~---~~~~~~~~~~~W~~~nl~~l~~a~ 673 (852)
T PRK11498 616 E----YVDWV-ISRPYIFLVLLNLVGVAVGIWRYFYGPP---NEILTVIVSLVWVFYNLIILGGAV 673 (852)
T ss_pred c----ceehH-HHHHHHHHHHHHHHHHHHHHHHHHhCCc---ccchhhhhhHHHHHHHHHHHHHHH
Confidence 1 25564 5789999999999999999999876431 223456799999999998777666
No 13
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=3.5e-43 Score=309.00 Aligned_cols=80 Identities=64% Similarity=1.352 Sum_probs=42.1
Q ss_pred CCCCCCCCCCcccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCccccccccCccccCCCCCCCCCc
Q 001576 28 RPPTRQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRHKGCARVAGDEEDNFDD 107 (1050)
Q Consensus 28 ~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~ee~~~d 107 (1050)
+||++++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+|||||||||||||||||+|||||||+|
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gDeeedd~d 80 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGDEEEDDVD 80 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS-----S-
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCCccccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998876
No 14
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=9.7e-35 Score=350.97 Aligned_cols=359 Identities=17% Similarity=0.231 Sum_probs=240.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCCc-h--------hHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhhhhhhc
Q 001576 227 YRIVIILRLFILAFFLRFRILTPAYDA-F--------PLWIISVICEVWFAFSWILDQFPKWFPITRETYLDRLSIRFER 297 (1050)
Q Consensus 227 yR~~~~~~l~~l~~yl~~Ri~~~~~~~-~--------~lw~~~~~~Ei~f~~~wil~q~~kw~Pv~R~t~~drL~~r~~~ 297 (1050)
.|+++++..++...|..|+....++.. . .+-.+.+..+.+.+.+-++..+.... .|... .+...-..
T Consensus 41 rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~~ 116 (691)
T PRK05454 41 RRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAAG 116 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCccccc
Confidence 577777777888999999988754322 1 11112223333333333333332211 11111 11000001
Q ss_pred CCCCCCCCCeeEEEecCCCCCCCHHHH----HHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhh
Q 001576 298 EGEPNRLAPVDVFVSTVDPLKEPPIIT----ANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCK 373 (1050)
Q Consensus 298 ~~~~~~lp~VDvfV~T~dp~kEpp~v~----~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCk 373 (1050)
+......|.|+|+||+|| |++..+ ..|+.|+.+.||| +++.+||+|||.++-+ +
T Consensus 117 ~~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~-------~----------- 174 (691)
T PRK05454 117 DPPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDI-------A----------- 174 (691)
T ss_pred CCCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhH-------H-----------
Confidence 123456799999999999 998754 5556677789998 5899999999998721 1
Q ss_pred hccCCCCCcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhh
Q 001576 374 KYIIEPRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGM 453 (1050)
Q Consensus 374 k~~iepR~Pe~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~i 453 (1050)
..|+ +.|+++ .++.
T Consensus 175 ----------------------------~~e~----~~~~~L-------~~~~--------------------------- 188 (691)
T PRK05454 175 ----------------------------AAEE----AAWLEL-------RAEL--------------------------- 188 (691)
T ss_pred ----------------------------HHHH----HHHHHH-------HHhc---------------------------
Confidence 0011 122222 2110
Q ss_pred HHhhhcCCCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhc
Q 001576 454 IQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLM 533 (1050)
Q Consensus 454 iqv~l~~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~ 533 (1050)
+ .-+++.|..|++ |.|+||||+|.+++.++ .+.+||++||||++ +.+++|++++.+|.
T Consensus 189 --------~-------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs~-m~~d~L~~lv~~m~ 246 (691)
T PRK05454 189 --------G-------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADSL-MSGDTLVRLVRLME 246 (691)
T ss_pred --------C-------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCCC-CCHHHHHHHHHHHh
Confidence 0 013589988887 67899999999999654 56799999999997 78999999999885
Q ss_pred -CcCCCccEEEEecCccccCCCCCCcccc----hhhHHHHhhcccccCCC--CceeeccCceehhhhhcCCCCCCCCCCC
Q 001576 534 -DPQLGKKLCYVQFPQRFDGIDRHDRYAN----RNIVFFDINMLGLDGIQ--GPVYVGTGCVFNRQALYGYDPPVSEKRP 606 (1050)
Q Consensus 534 -Dp~~g~~v~~VQ~PQ~F~~id~~D~y~n----~~~vFfdi~~~glDg~q--gp~yvGTGc~fRR~ALyg~~p~~~~~~~ 606 (1050)
|| ++|.||+|+.+.|.+. .++. ...++.++...|++.+| ...|.|+|+++||+|+..
T Consensus 247 ~dP----~vGlVQt~~~~~n~~s--lfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~---------- 310 (691)
T PRK05454 247 ANP----RAGLIQTLPVAVGADT--LFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAE---------- 310 (691)
T ss_pred hCc----CEEEEeCCccCcCCCC--HHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHH----------
Confidence 98 8999999999988653 2322 12344455566777655 445788888888888742
Q ss_pred CCCCCCCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhh
Q 001576 607 KMTCDCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQ 686 (1050)
Q Consensus 607 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1050)
|||-.
T Consensus 311 -------------~~glp-------------------------------------------------------------- 315 (691)
T PRK05454 311 -------------HCGLP-------------------------------------------------------------- 315 (691)
T ss_pred -------------hcCCc--------------------------------------------------------------
Confidence 11110
Q ss_pred hhhhhhcCCchHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEE
Q 001576 687 KNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSV 766 (1050)
Q Consensus 687 ~~~~~~fG~s~~f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsv 766 (1050)
.+.+.|| |..++++||+++|.+|+++||+++
T Consensus 316 ----------------~L~g~~p---------------------------------~~~~~LseD~~~a~~l~~~GyrV~ 346 (691)
T PRK05454 316 ----------------PLPGRGP---------------------------------FGGHILSHDFVEAALMRRAGWGVW 346 (691)
T ss_pred ----------------cccccCC---------------------------------CCCCcccHHHHHHHHHHHCCCEEE
Confidence 0011233 334689999999999999999999
Q ss_pred EecCCCccccccCCCCHHHHHHHhHhhhchhHHHHHhhccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHH-HHH
Q 001576 767 YCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCT-LPA 845 (1050)
Q Consensus 767 Y~~p~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~~k~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~sl~~liyll-lP~ 845 (1050)
|+ |+...+++++|+|+.++++||.||++|++|++.. +. .+++++.+|++|+++++.++.+..++++++ .|+
T Consensus 347 ~~-pd~~~~~ee~P~tl~~~~~qr~RW~~G~lQ~l~~----l~---~~gl~~~~R~~~l~g~~~yl~~P~wll~l~l~~~ 418 (691)
T PRK05454 347 LA-PDLPGSYEELPPNLLDELKRDRRWCQGNLQHLRL----LL---AKGLHPVSRLHFLTGIMSYLSAPLWLLFLLLGTA 418 (691)
T ss_pred Ec-CccccccccCCCCHHHHHHHHHHHHhchHHHHHH----HH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 4433348999999999999999999999999852 33 588999999999998888887766655544 444
Q ss_pred HH
Q 001576 846 IC 847 (1050)
Q Consensus 846 l~ 847 (1050)
+.
T Consensus 419 ~~ 420 (691)
T PRK05454 419 LA 420 (691)
T ss_pred HH
Confidence 33
No 15
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=1.1e-32 Score=298.75 Aligned_cols=182 Identities=20% Similarity=0.298 Sum_probs=142.8
Q ss_pred CcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhc-CcCCCccEEEEecCccc
Q 001576 472 PRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLM-DPQLGKKLCYVQFPQRF 550 (1050)
Q Consensus 472 P~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~-Dp~~g~~v~~VQ~PQ~F 550 (1050)
++++|+.|++ ++|+||||||++++..+ ++++||+++|||+. +.|++|++++.+|. || ++|.||+||+|
T Consensus 67 ~~v~~~~r~~----~~g~Kag~l~~~~~~~~--~~~~~i~~~DaD~~-~~p~~l~~~v~~~~~~~----~vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRRE----NTGRKAGNIADFCRRWG--SRYDYMVVLDADSL-MSGDTIVRLVRRMEANP----RAGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCC----CCCccHHHHHHHHHHhC--CCCCEEEEEeCCCC-CCHHHHHHHHHHHHhCC----CEEEEeCCcee
Confidence 4699999999 56699999999998422 57899999999997 79999999999886 88 99999999999
Q ss_pred cCCCCC-Ccc-cchhhHHHHhhcccccCCCC--ceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCcc
Q 001576 551 DGIDRH-DRY-ANRNIVFFDINMLGLDGIQG--PVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRK 626 (1050)
Q Consensus 551 ~~id~~-D~y-~n~~~vFfdi~~~glDg~qg--p~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~ 626 (1050)
.|.+.- .+. .-.+..|..+.+.|++.+++ .+++||+.++||+||... |+
T Consensus 136 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~-----------------------~~---- 188 (254)
T cd04191 136 IGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEH-----------------------CA---- 188 (254)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHh-----------------------cC----
Confidence 987631 111 11255666777888877654 578899999999998310 00
Q ss_pred ccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhhhhcCCchHHHhhhhhh
Q 001576 627 SKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKE 706 (1050)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~sal~e 706 (1050)
+.+
T Consensus 189 -----------------------------------------------------------------------------~~~ 191 (254)
T cd04191 189 -----------------------------------------------------------------------------LPV 191 (254)
T ss_pred -----------------------------------------------------------------------------Ccc
Confidence 011
Q ss_pred cCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecCCCccccccCCCCHHHH
Q 001576 707 DGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDR 786 (1050)
Q Consensus 707 ~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~af~G~aP~tl~~~ 786 (1050)
+||+ .||..++++||+++|++++.+||+++|.+... +.++++|+|++++
T Consensus 192 i~g~------------------------------g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~-~~~~~~p~~~~~~ 240 (254)
T cd04191 192 LPGR------------------------------PPFGGHILSHDFVEAALMRRAGWEVRLAPDLE-GSYEECPPTLIDF 240 (254)
T ss_pred ccCC------------------------------CCCCCCeecHHHHHHHHHHHcCCEEEEccCCc-ceEeECCCCHHHH
Confidence 2332 13445799999999999999999999995433 2379999999999
Q ss_pred HHHhHhhhchhHH
Q 001576 787 LHQVLRWALGSVE 799 (1050)
Q Consensus 787 l~QR~RWA~G~lQ 799 (1050)
++||.||++|++|
T Consensus 241 ~~qr~RW~~G~~q 253 (254)
T cd04191 241 LKRDRRWCQGNLQ 253 (254)
T ss_pred HHHHHHHHhhcCc
Confidence 9999999999998
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.3e-29 Score=289.13 Aligned_cols=233 Identities=28% Similarity=0.377 Sum_probs=171.5
Q ss_pred CCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCcc
Q 001576 304 LAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPE 383 (1050)
Q Consensus 304 lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe 383 (1050)
+|.|||+||++| |++.++.+|+.|++++|||. +.++|.|||+++-|++-+.|. +.
T Consensus 53 ~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~~~~--------------~~------ 107 (439)
T COG1215 53 LPKVSVIIPAYN---EEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEILEEL--------------GA------ 107 (439)
T ss_pred CCceEEEEecCC---CchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHHHHH--------------Hh------
Confidence 699999999999 99999999999999999996 789999999998333222221 10
Q ss_pred cccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcCCCC
Q 001576 384 FYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGA 463 (1050)
Q Consensus 384 ~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~ 463 (1050)
+ .+
T Consensus 108 -----------------------------------------~---~~--------------------------------- 110 (439)
T COG1215 108 -----------------------------------------E---YG--------------------------------- 110 (439)
T ss_pred -----------------------------------------h---cC---------------------------------
Confidence 0 00
Q ss_pred ccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEE
Q 001576 464 LDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCY 543 (1050)
Q Consensus 464 ~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~ 543 (1050)
|.+.-+..++ .++.|+||+|.++.. +.+++|+++|||++ +.+++|++++..|.|+. .+|.
T Consensus 111 --------~~~~~~~~~~----~~~gK~~al~~~l~~----~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~---~~~v 170 (439)
T COG1215 111 --------PNFRVIYPEK----KNGGKAGALNNGLKR----AKGDVVVILDADTV-PEPDALRELVSPFEDPP---VGAV 170 (439)
T ss_pred --------cceEEEeccc----cCccchHHHHHHHhh----cCCCEEEEEcCCCC-CChhHHHHHHhhhcCCC---eeEE
Confidence 0111111122 678999999999995 66999999999997 89999999999999884 4489
Q ss_pred EecCccccCCCCCCcccchhhHHHHhhc-----ccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCc
Q 001576 544 VQFPQRFDGIDRHDRYANRNIVFFDINM-----LGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCC 618 (1050)
Q Consensus 544 VQ~PQ~F~~id~~D~y~n~~~vFfdi~~-----~glDg~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~ 618 (1050)
+|.||.+.+.++....+....+.|.... .+.++-...+
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~------------------------------------- 213 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISF------------------------------------- 213 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEE-------------------------------------
Confidence 9999999887651111111111111111 0000001111
Q ss_pred ccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhhhhcCCchH
Q 001576 619 CCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPV 698 (1050)
Q Consensus 619 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~ 698 (1050)
.-|++..
T Consensus 214 -------------------------------------------------------------------------~~G~~~~ 220 (439)
T COG1215 214 -------------------------------------------------------------------------LSGSSSA 220 (439)
T ss_pred -------------------------------------------------------------------------Ecceeee
Confidence 1267777
Q ss_pred HHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecCCCcccccc
Q 001576 699 FIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGS 778 (1050)
Q Consensus 699 f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~af~G~ 778 (1050)
||+++|++.||+.+ .++|||.+++++++.+|||++|++... .+++
T Consensus 221 ~rr~aL~~~g~~~~---------------------------------~~i~ED~~lt~~l~~~G~~~~~~~~~~--~~~~ 265 (439)
T COG1215 221 FRRSALEEVGGWLE---------------------------------DTITEDADLTLRLHLRGYRVVYVPEAI--VWTE 265 (439)
T ss_pred EEHHHHHHhCCCCC---------------------------------CceeccHHHHHHHHHCCCeEEEeecce--Eeee
Confidence 78888888887655 699999999999999999999996543 3899
Q ss_pred CCCCHHHHHHHhHhhhchhHHHHHh
Q 001576 779 APINLSDRLHQVLRWALGSVEIFLS 803 (1050)
Q Consensus 779 aP~tl~~~l~QR~RWA~G~lQil~~ 803 (1050)
+|+|+.++++||.||++|++|++..
T Consensus 266 ~p~t~~~~~~Qr~RW~~g~~~~~~~ 290 (439)
T COG1215 266 APETLKELWRQRLRWARGGLQVLLL 290 (439)
T ss_pred CcccHHHHHHHHHHHHcccceeeeh
Confidence 9999999999999999999999975
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.96 E-value=5e-28 Score=280.79 Aligned_cols=231 Identities=21% Similarity=0.232 Sum_probs=165.9
Q ss_pred CCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCC
Q 001576 302 NRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRA 381 (1050)
Q Consensus 302 ~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~ 381 (1050)
...|.|+|+||+|| |+. .+.+|+.|+++++|| ++.++|.|||+++-|.+.+.+
T Consensus 72 ~~~p~vsViIP~yN---E~~-~i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~--------------------- 124 (444)
T PRK14583 72 KGHPLVSILVPCFN---EGL-NARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA--------------------- 124 (444)
T ss_pred CCCCcEEEEEEeCC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH---------------------
Confidence 35799999999999 885 568999999999999 489999999998733322211
Q ss_pred cccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcCC
Q 001576 382 PEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSE 461 (1050)
Q Consensus 382 Pe~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~ 461 (1050)
+.++
T Consensus 125 ----------------------------------------~~~~------------------------------------ 128 (444)
T PRK14583 125 ----------------------------------------LLAE------------------------------------ 128 (444)
T ss_pred ----------------------------------------HHHh------------------------------------
Confidence 1100
Q ss_pred CCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhh-cCcCCCcc
Q 001576 462 GALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGKK 540 (1050)
Q Consensus 462 g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~-~Dp~~g~~ 540 (1050)
.|++.++.+++ ...||+|+|++++. ++++||+++|+|+. ++|++|++.+-.| .|| +
T Consensus 129 ---------~~~v~vv~~~~-----n~Gka~AlN~gl~~----a~~d~iv~lDAD~~-~~~d~L~~lv~~~~~~~----~ 185 (444)
T PRK14583 129 ---------DPRLRVIHLAH-----NQGKAIALRMGAAA----ARSEYLVCIDGDAL-LDKNAVPYLVAPLIANP----R 185 (444)
T ss_pred ---------CCCEEEEEeCC-----CCCHHHHHHHHHHh----CCCCEEEEECCCCC-cCHHHHHHHHHHHHhCC----C
Confidence 12345555443 23599999999985 68999999999997 7999999999866 466 8
Q ss_pred EEEEecCccccCCCCCCcccc----hhhHHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCC
Q 001576 541 LCYVQFPQRFDGIDRHDRYAN----RNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSW 616 (1050)
Q Consensus 541 v~~VQ~PQ~F~~id~~D~y~n----~~~vFfdi~~~glDg~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~ 616 (1050)
++.||..++..+.+ ...+. +...++....++.+-.+..+.+
T Consensus 186 ~g~v~g~~~~~~~~--~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~--------------------------------- 230 (444)
T PRK14583 186 TGAVTGNPRIRTRS--TLIGRVQVGEFSSIIGLIKRTQRVYGQVFTV--------------------------------- 230 (444)
T ss_pred eEEEEccceecCCC--cchhhHHHHHHHHHHHHHHHHHHHhCCceEe---------------------------------
Confidence 99999987765422 11111 1112222222222222111111
Q ss_pred CcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhhhhcCCc
Q 001576 617 CCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQS 696 (1050)
Q Consensus 617 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s 696 (1050)
-|.+
T Consensus 231 ----------------------------------------------------------------------------sG~~ 234 (444)
T PRK14583 231 ----------------------------------------------------------------------------SGVV 234 (444)
T ss_pred ----------------------------------------------------------------------------cCce
Confidence 1444
Q ss_pred hHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecCCCcccc
Q 001576 697 PVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFK 776 (1050)
Q Consensus 697 ~~f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~af~ 776 (1050)
..||++++++.||+++ +.++||++++++|+.+||++.|++.. .+ +
T Consensus 235 ~~~rr~al~~vGg~~~---------------------------------~~i~ED~dl~~rl~~~G~~i~~~p~a-~~-~ 279 (444)
T PRK14583 235 AAFRRRALADVGYWSP---------------------------------DMITEDIDISWKLQLKHWSVFFEPRG-LC-W 279 (444)
T ss_pred eEEEHHHHHHcCCCCC---------------------------------CcccccHHHHHHHHHcCCeEEEeecc-EE-e
Confidence 4566666677888665 58999999999999999999999543 33 8
Q ss_pred ccCCCCHHHHHHHhHhhhchhHHHHHhh
Q 001576 777 GSAPINLSDRLHQVLRWALGSVEIFLSR 804 (1050)
Q Consensus 777 G~aP~tl~~~l~QR~RWA~G~lQil~~k 804 (1050)
+++|+|++++++||.||++|.+|+++++
T Consensus 280 ~~~p~t~~~~~~Qr~RW~~G~~~~~~~~ 307 (444)
T PRK14583 280 ILMPETLRGLWKQRLRWAQGGAEVFLKN 307 (444)
T ss_pred eeCCCCHHHHHHHHHHHhCcHHHHHHHH
Confidence 9999999999999999999999999764
No 18
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.96 E-value=7.1e-27 Score=271.05 Aligned_cols=124 Identities=14% Similarity=0.109 Sum_probs=97.1
Q ss_pred CCchHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHh-CCcEEEEecCCC
Q 001576 694 GQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHC-RGWKSVYCVPKR 772 (1050)
Q Consensus 694 G~s~~f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~-~GWrsvY~~p~~ 772 (1050)
|+...||++++++.||+++ ++++||++++++++. .|+++.|++++
T Consensus 217 Ga~~~~Rr~~l~~vggf~~---------------------------------~~i~ED~~l~~rl~~~~g~kv~~~~~a- 262 (439)
T TIGR03111 217 GAFSAFRRETILKTQLYNS---------------------------------ETVGEDTDMTFQIRELLDGKVYLCENA- 262 (439)
T ss_pred cHHHhhhHHHHHHhCCCCC---------------------------------CCcCccHHHHHHHHHhcCCeEEECCCC-
Confidence 6667899999999999876 489999999999975 68999998543
Q ss_pred ccccccCCCCHHHHHHHhHhhhchhHHHHHhhccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCC
Q 001576 773 PAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTLPAICLLTGK 852 (1050)
Q Consensus 773 ~af~G~aP~tl~~~l~QR~RWA~G~lQil~~k~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~ 852 (1050)
.++.++|+|++++++||.||++|.+|++.....+.. ..+.++.+++.+......+...++.+++.++++++.++|.
T Consensus 263 -~~~~~~p~t~~~~~~QR~RW~rG~~qv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (439)
T TIGR03111 263 -IFYVDPIDGLNKLYTQRQRWQRGELEVSHMFFESAN---KSIKGFFSNFMVRRIMYDHTFAFPRMIWYFAMIFLIFLGY 338 (439)
T ss_pred -EEEEECCcCHHHHHHHHHHHhccHHHHHHHHHhhhh---hchhhhhhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHhcc
Confidence 348999999999999999999999999965433332 3456666666554555556667788888888888887776
Q ss_pred cch
Q 001576 853 FII 855 (1050)
Q Consensus 853 ~ii 855 (1050)
++.
T Consensus 339 ~~~ 341 (439)
T TIGR03111 339 PVK 341 (439)
T ss_pred HHH
Confidence 544
No 19
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.95 E-value=2.3e-26 Score=263.49 Aligned_cols=235 Identities=24% Similarity=0.322 Sum_probs=167.7
Q ss_pred CCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCC
Q 001576 302 NRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRA 381 (1050)
Q Consensus 302 ~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~ 381 (1050)
...|.|.|+||++| |+ ..+.+|+.|+++++|| +..++|.|||.++-|.+.+.+
T Consensus 51 ~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~~--------------------- 103 (420)
T PRK11204 51 KEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILDR--------------------- 103 (420)
T ss_pred CCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHHH---------------------
Confidence 46899999999998 86 6789999999999999 578999999988732211111
Q ss_pred cccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcCC
Q 001576 382 PEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSE 461 (1050)
Q Consensus 382 Pe~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~ 461 (1050)
+++
T Consensus 104 ----------------------------------------~~~------------------------------------- 106 (420)
T PRK11204 104 ----------------------------------------LAA------------------------------------- 106 (420)
T ss_pred ----------------------------------------HHH-------------------------------------
Confidence 110
Q ss_pred CCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhh-cCcCCCcc
Q 001576 462 GALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGKK 540 (1050)
Q Consensus 462 g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~-~Dp~~g~~ 540 (1050)
+.|++.++.++++ ..||+|+|.+++. +++|||+++|+|.+ +.|++|++.+..| .|| +
T Consensus 107 --------~~~~v~~i~~~~n-----~Gka~aln~g~~~----a~~d~i~~lDaD~~-~~~d~L~~l~~~~~~~~----~ 164 (420)
T PRK11204 107 --------QIPRLRVIHLAEN-----QGKANALNTGAAA----ARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNP----R 164 (420)
T ss_pred --------hCCcEEEEEcCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCCC-CChhHHHHHHHHHHhCC----C
Confidence 0134677776653 3499999999995 68999999999997 7999999999988 577 8
Q ss_pred EEEEecCccccCCCCCCcccchhhHHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCccc
Q 001576 541 LCYVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCC 620 (1050)
Q Consensus 541 v~~VQ~PQ~F~~id~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c 620 (1050)
++.||...+..|... ..+..+...|.... |..-+-+..+|.
T Consensus 165 v~~v~g~~~~~~~~~--~~~~~~~~~~~~~~--------------~~~~~~~~~~~~----------------------- 205 (420)
T PRK11204 165 VGAVTGNPRIRNRST--LLGRIQVGEFSSII--------------GLIKRAQRVYGR----------------------- 205 (420)
T ss_pred eEEEECCceeccchh--HHHHHHHHHHHHhh--------------hHHHHHHHHhCC-----------------------
Confidence 999999877654321 11111110010000 000000000000
Q ss_pred CCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhhhhcCCchHHH
Q 001576 621 CGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFI 700 (1050)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~ 700 (1050)
...--|.+..||
T Consensus 206 --------------------------------------------------------------------~~~~~G~~~~~r 217 (420)
T PRK11204 206 --------------------------------------------------------------------VFTVSGVITAFR 217 (420)
T ss_pred --------------------------------------------------------------------ceEecceeeeee
Confidence 000015566778
Q ss_pred hhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecCCCccccccCC
Q 001576 701 ASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAP 780 (1050)
Q Consensus 701 ~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~af~G~aP 780 (1050)
++++++.||+++ +.++||++++++++.+||+++|++. ..+ +++.|
T Consensus 218 r~~l~~vgg~~~---------------------------------~~~~ED~~l~~rl~~~G~~i~~~p~-~~~-~~~~p 262 (420)
T PRK11204 218 KSALHEVGYWST---------------------------------DMITEDIDISWKLQLRGWDIRYEPR-ALC-WILMP 262 (420)
T ss_pred HHHHHHhCCCCC---------------------------------CcccchHHHHHHHHHcCCeEEeccc-cEE-EeECc
Confidence 888888998765 4789999999999999999999954 434 89999
Q ss_pred CCHHHHHHHhHhhhchhHHHHHhh
Q 001576 781 INLSDRLHQVLRWALGSVEIFLSR 804 (1050)
Q Consensus 781 ~tl~~~l~QR~RWA~G~lQil~~k 804 (1050)
+|++++++||.||++|.+|.++++
T Consensus 263 ~t~~~~~~Qr~RW~~G~~~~l~~~ 286 (420)
T PRK11204 263 ETLKGLWKQRLRWAQGGAEVLLKN 286 (420)
T ss_pred ccHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999999999754
No 20
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.94 E-value=1.3e-24 Score=255.54 Aligned_cols=266 Identities=18% Similarity=0.237 Sum_probs=180.7
Q ss_pred CCCCeeEEEecCCCCCCCHHHHHHHHHHHH-cCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCC
Q 001576 303 RLAPVDVFVSTVDPLKEPPIITANTVLSIL-SMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRA 381 (1050)
Q Consensus 303 ~lp~VDvfV~T~dp~kEpp~v~~nTvls~l-a~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~ 381 (1050)
..|.|+|+||++| |. .++.+||-|++ ++||| ++.|+|.||++.+-|.+.+.+.+
T Consensus 64 ~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l~------------------- 118 (504)
T PRK14716 64 PEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRLA------------------- 118 (504)
T ss_pred CCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHHH-------------------
Confidence 4899999999999 86 78999999975 78996 78999999998875444333311
Q ss_pred cccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcCC
Q 001576 382 PEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSE 461 (1050)
Q Consensus 382 Pe~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~ 461 (1050)
+ .|
T Consensus 119 ------------------------------------------~------------------------~~----------- 121 (504)
T PRK14716 119 ------------------------------------------A------------------------RY----------- 121 (504)
T ss_pred ------------------------------------------H------------------------HC-----------
Confidence 0 01
Q ss_pred CCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhc--cCCCC---CEEEEecCCCCCChHHHHHHHhhhhcCcC
Q 001576 462 GALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSA--VLTNA---PFILNLDCDHYLNNSKAVREAMCFLMDPQ 536 (1050)
Q Consensus 462 g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSa--v~tng---p~il~lDcD~~~~~~~~Lr~amcf~~Dp~ 536 (1050)
|++..+. .+++| .+.||+|||.+++... -...| ++|+++|||.+ ++|++|+.....+-
T Consensus 122 ----------p~v~~vv-~~~~g--p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~Lr~~~~~~~--- 184 (504)
T PRK14716 122 ----------PRVHLVI-VPHDG--PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDV-IHPLELRLYNYLLP--- 184 (504)
T ss_pred ----------CCeEEEE-eCCCC--CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCC-cCccHHHHHHhhcC---
Confidence 2232222 23333 3589999999987531 01234 99999999997 69999997654443
Q ss_pred CCccEEEEecCccccCCCCCCc----ccchhhHHHHhhcccccCCCCce-eeccCceehhhhhcCCCCCCCCCCCCCCCC
Q 001576 537 LGKKLCYVQFPQRFDGIDRHDR----YANRNIVFFDINMLGLDGIQGPV-YVGTGCVFNRQALYGYDPPVSEKRPKMTCD 611 (1050)
Q Consensus 537 ~g~~v~~VQ~PQ~F~~id~~D~----y~n~~~vFfdi~~~glDg~qgp~-yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~ 611 (1050)
+..+||.|....+.+.+.. |..+....+...++.++.+++++ ..|||++|||++|-.
T Consensus 185 ---~~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~--------------- 246 (504)
T PRK14716 185 ---RHDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALER--------------- 246 (504)
T ss_pred ---CCCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHH---------------
Confidence 3468999987655433221 22222223344466667777765 568888888888710
Q ss_pred CCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhhh
Q 001576 612 CWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEK 691 (1050)
Q Consensus 612 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1050)
T Consensus 247 -------------------------------------------------------------------------------- 246 (504)
T PRK14716 247 -------------------------------------------------------------------------------- 246 (504)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCchHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecCC
Q 001576 692 RFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPK 771 (1050)
Q Consensus 692 ~fG~s~~f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~ 771 (1050)
.+.+.||. +|..+++|||+++|++++.+|||++|++..
T Consensus 247 -----------l~~~~GG~-------------------------------~fd~~sLTED~dLglRL~~~G~rv~y~p~a 284 (504)
T PRK14716 247 -----------LAAERGGQ-------------------------------PFDSDSLTEDYDIGLRLKRAGFRQIFVRVR 284 (504)
T ss_pred -----------HHhhcCCC-------------------------------CCCCCCcchHHHHHHHHHHCCCEEEEeccc
Confidence 00122431 244579999999999999999999999543
Q ss_pred C-------------ccccccCCCCHHHHHHHhHhhhchh-HHHHHhhc--cccccccCCCCCcccchhhhhhhhh
Q 001576 772 R-------------PAFKGSAPINLSDRLHQVLRWALGS-VEIFLSRH--CPLWYGYGGKLKWLERLAYTNTIVY 830 (1050)
Q Consensus 772 ~-------------~af~G~aP~tl~~~l~QR~RWA~G~-lQil~~k~--~Pl~~g~~~~Ls~~QRL~Yl~~~ly 830 (1050)
. .+.++++|+|++++++||.||+.|- +|...+.- .++. .+-+.|++|.+.+..++.
T Consensus 285 i~~~~~~~~~~~~~v~t~e~~P~t~~a~~rQR~RW~~Gi~~Q~~~~~gw~~~~~---~~~~~~rdr~~~~~~~~~ 356 (504)
T PRK14716 285 ADDTTDRPDRRGEPIATREFFPDTFKAAVRQKARWIYGIAFQGWERLGWKGPAA---TKYMLWRDRKGLLTNLLL 356 (504)
T ss_pred ccccccccccccccccccccCccCHHHHHHHHHHHHhchHHhhHHhcCCCCchh---hhhhHHHHHHHHHHHHHH
Confidence 1 1235889999999999999999994 78875321 1221 345777888887766553
No 21
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.92 E-value=2.7e-24 Score=223.51 Aligned_cols=229 Identities=36% Similarity=0.587 Sum_probs=171.3
Q ss_pred CCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCccc
Q 001576 305 APVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEF 384 (1050)
Q Consensus 305 p~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~ 384 (1050)
|.|.|+||++| |++..+..++.|+++.+||.+++.++|+|||.++- +.+..+
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~-------t~~~~~------------------ 52 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPE-------LRALAA------------------ 52 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchh-------HHHHHH------------------
Confidence 67999999999 88889999999999999999889999999998762 221110
Q ss_pred ccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcCCCCc
Q 001576 385 YFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGAL 464 (1050)
Q Consensus 385 yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~~ 464 (1050)
++..+
T Consensus 53 ------------------------------------~~~~~--------------------------------------- 57 (234)
T cd06421 53 ------------------------------------ELGVE--------------------------------------- 57 (234)
T ss_pred ------------------------------------Hhhcc---------------------------------------
Confidence 01000
Q ss_pred cccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcC-cCCCccEEE
Q 001576 465 DVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMD-PQLGKKLCY 543 (1050)
Q Consensus 465 d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~D-p~~g~~v~~ 543 (1050)
.++.|+.+++ +.+.||||+|++++. .+++||+.+|+|.+ .+|++|.+.+..|.+ | +++.
T Consensus 58 -------~~~~~~~~~~----~~~~~~~~~n~~~~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~~ 117 (234)
T cd06421 58 -------YGYRYLTRPD----NRHAKAGNLNNALAH----TTGDFVAILDADHV-PTPDFLRRTLGYFLDDP----KVAL 117 (234)
T ss_pred -------cCceEEEeCC----CCCCcHHHHHHHHHh----CCCCEEEEEccccC-cCccHHHHHHHHHhcCC----CeEE
Confidence 0246666665 456899999999994 58999999999998 589999999999876 6 8999
Q ss_pred EecCccccCCCCCC----cccchhhHHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcc
Q 001576 544 VQFPQRFDGIDRHD----RYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCC 619 (1050)
Q Consensus 544 VQ~PQ~F~~id~~D----~y~n~~~vFfdi~~~glDg~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~ 619 (1050)
||.++.+.+.+..+ .+......|+.....+........+.|++.+
T Consensus 118 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------------------------- 166 (234)
T cd06421 118 VQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAV------------------------------- 166 (234)
T ss_pred EecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceee-------------------------------
Confidence 99999998776532 2222333344333333333333334444444
Q ss_pred cCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhhhhcCCchHH
Q 001576 620 CCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVF 699 (1050)
Q Consensus 620 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f 699 (1050)
|
T Consensus 167 -------------------------------------------------------------------------------~ 167 (234)
T cd06421 167 -------------------------------------------------------------------------------V 167 (234)
T ss_pred -------------------------------------------------------------------------------E
Confidence 4
Q ss_pred HhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecCCCccccccC
Q 001576 700 IASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSA 779 (1050)
Q Consensus 700 ~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~af~G~a 779 (1050)
|+++++++||++. ..+.||++++++++.+||+++|++... + ++..
T Consensus 168 r~~~~~~ig~~~~---------------------------------~~~~eD~~l~~r~~~~g~~i~~~~~~~-~-~~~~ 212 (234)
T cd06421 168 RREALDEIGGFPT---------------------------------DSVTEDLATSLRLHAKGWRSVYVPEPL-A-AGLA 212 (234)
T ss_pred eHHHHHHhCCCCc---------------------------------cceeccHHHHHHHHHcCceEEEecCcc-c-cccC
Confidence 4455556788764 367899999999999999999996543 3 8999
Q ss_pred CCCHHHHHHHhHhhhchhHHHH
Q 001576 780 PINLSDRLHQVLRWALGSVEIF 801 (1050)
Q Consensus 780 P~tl~~~l~QR~RWA~G~lQil 801 (1050)
|.+++++++||.||.+|++|++
T Consensus 213 ~~~~~~~~~q~~rw~~~~~~~~ 234 (234)
T cd06421 213 PETLAAYIKQRLRWARGMLQIL 234 (234)
T ss_pred CccHHHHHHHHHHHhcCCeeeC
Confidence 9999999999999999999864
No 22
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.92 E-value=1.1e-23 Score=256.44 Aligned_cols=271 Identities=20% Similarity=0.294 Sum_probs=178.3
Q ss_pred CCCCCeeEEEecCCCCCCCHHHHHHHHHHHH-cCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCC
Q 001576 302 NRLAPVDVFVSTVDPLKEPPIITANTVLSIL-SMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPR 380 (1050)
Q Consensus 302 ~~lp~VDvfV~T~dp~kEpp~v~~nTvls~l-a~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR 380 (1050)
.+.|+|.|+||.+| |. .++.+|+-+++ ++|||. +.|+|.||+..+-|.+.+.+
T Consensus 60 ~~~~~vsIlVPa~n---E~-~vi~~~i~~ll~~ldYP~--~eI~vi~~~nD~~T~~~~~~-------------------- 113 (727)
T PRK11234 60 PDEKPLAIMVPAWN---ET-GVIGNMAELAATTLDYEN--YHIFVGTYPNDPATQADVDA-------------------- 113 (727)
T ss_pred CCCCCEEEEEecCc---ch-hhHHHHHHHHHHhCCCCC--eEEEEEecCCChhHHHHHHH--------------------
Confidence 45799999999999 87 89999999987 799995 89999977655522222211
Q ss_pred CcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcC
Q 001576 381 APEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGS 460 (1050)
Q Consensus 381 ~Pe~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~ 460 (1050)
++++ ||.
T Consensus 114 -----------------------------------------l~~~------------------------~p~-------- 120 (727)
T PRK11234 114 -----------------------------------------VCAR------------------------FPN-------- 120 (727)
T ss_pred -----------------------------------------HHHH------------------------CCC--------
Confidence 1111 000
Q ss_pred CCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccC---CCC--CEEEEecCCCCCChHHHHHHHhhhhcCc
Q 001576 461 EGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVL---TNA--PFILNLDCDHYLNNSKAVREAMCFLMDP 535 (1050)
Q Consensus 461 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~---tng--p~il~lDcD~~~~~~~~Lr~amcf~~Dp 535 (1050)
+ +++.+.| || .+.||+|||.++....-. +.+ +.++++|||.+ +.|++|+ .+-+|+++
T Consensus 121 ----------~-~~v~~~~---~g--~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~-v~pd~L~-~~~~l~~~ 182 (727)
T PRK11234 121 ----------V-HKVVCAR---PG--PTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV-ISPMELR-LFNYLVER 182 (727)
T ss_pred ----------c-EEEEeCC---CC--CCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC-CChhHHH-HHHhhcCC
Confidence 0 1333333 33 348999999998853111 133 45888999997 7999998 67888886
Q ss_pred CCCccEEEEecCccccCCCCCCc----ccchhhHHHHhhcccccCCCCceee-ccCceehhhhhcCCCCCCCCCCCCCCC
Q 001576 536 QLGKKLCYVQFPQRFDGIDRHDR----YANRNIVFFDINMLGLDGIQGPVYV-GTGCVFNRQALYGYDPPVSEKRPKMTC 610 (1050)
Q Consensus 536 ~~g~~v~~VQ~PQ~F~~id~~D~----y~n~~~vFfdi~~~glDg~qgp~yv-GTGc~fRR~ALyg~~p~~~~~~~~~~~ 610 (1050)
+ ++||.|..-.+...+.. |..+....+...+++++.++|++.+ |||++|.|+++
T Consensus 183 ----~-~~VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l---------------- 241 (727)
T PRK11234 183 ----K-DLIQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAV---------------- 241 (727)
T ss_pred ----C-CeEeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccH----------------
Confidence 4 89999966322221111 2233333444667788888766544 77888844432
Q ss_pred CCCCCCCcccCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhh
Q 001576 611 DCWPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFE 690 (1050)
Q Consensus 611 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1050)
T Consensus 242 -------------------------------------------------------------------------------- 241 (727)
T PRK11234 242 -------------------------------------------------------------------------------- 241 (727)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCchHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecC
Q 001576 691 KRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVP 770 (1050)
Q Consensus 691 ~~fG~s~~f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p 770 (1050)
+++.+.|| ..||..+++|||+++|++|+.+||+++|++.
T Consensus 242 -----------~al~~~gg------------------------------g~~~~~~~lTED~dlg~rL~~~G~~v~f~~~ 280 (727)
T PRK11234 242 -----------TALLEDGD------------------------------GIAFDVQSLTEDYDIGFRLKEKGMREIFVRF 280 (727)
T ss_pred -----------HHHHHhcC------------------------------CCCcCCCcchHHHHHHHHHHHCCCEEEEccc
Confidence 12234442 1247778999999999999999999999961
Q ss_pred CC---------------------ccccccCCCCHHHHHHHhHhhhch-hHHHHHhhcccccccc--CCCCCcccchhhhh
Q 001576 771 KR---------------------PAFKGSAPINLSDRLHQVLRWALG-SVEIFLSRHCPLWYGY--GGKLKWLERLAYTN 826 (1050)
Q Consensus 771 ~~---------------------~af~G~aP~tl~~~l~QR~RWA~G-~lQil~~k~~Pl~~g~--~~~Ls~~QRL~Yl~ 826 (1050)
.+ .++++..|+|+++.++||.||.+| .+|.+... .|.|. .+-+.|+.|-.++.
T Consensus 281 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQR~RW~~G~~~q~~~~~---~w~~~~~~~~~~~r~r~~~~~ 357 (727)
T PRK11234 281 PVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSAAVRQKSRWIIGIVFQGFKTL---GWTSSLTLNYFLWRDRKGAIT 357 (727)
T ss_pred ccccccccccccccccccccccceEEEEeCchhHHHHHHHHHHHHcccHHHHHHHh---CCCcchhhhhhhHHhhhHHHH
Confidence 11 335788999999999999999999 68887532 22110 12244555655555
Q ss_pred hhhhhhhH
Q 001576 827 TIVYPFTS 834 (1050)
Q Consensus 827 ~~ly~l~s 834 (1050)
.++..+.+
T Consensus 358 ~~~s~~~~ 365 (727)
T PRK11234 358 NFVSFLAM 365 (727)
T ss_pred HHHHHHHH
Confidence 44444433
No 23
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.92 E-value=6.4e-24 Score=223.03 Aligned_cols=227 Identities=23% Similarity=0.347 Sum_probs=162.8
Q ss_pred CCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCccc
Q 001576 305 APVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEF 384 (1050)
Q Consensus 305 p~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~ 384 (1050)
|.|.|+||+|| |. ..+..++.|+++++||.+++.|+|.|| +++-|++.+.+..
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~---------------------- 53 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIV---------------------- 53 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHH----------------------
Confidence 57999999998 86 678999999999999998899999998 6654443333210
Q ss_pred ccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcCCCCc
Q 001576 385 YFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGAL 464 (1050)
Q Consensus 385 yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~~ 464 (1050)
.+++ .
T Consensus 54 ----------------------------~~~~--------~--------------------------------------- 58 (232)
T cd06437 54 ----------------------------EEYA--------A--------------------------------------- 58 (232)
T ss_pred ----------------------------HHHh--------h---------------------------------------
Confidence 0000 0
Q ss_pred cccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEE
Q 001576 465 DVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYV 544 (1050)
Q Consensus 465 d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~V 544 (1050)
.-|++.++.+.+++| .||+|+|++++. .+++||+++|+|.+ +.|++|++...++.|| ++++|
T Consensus 59 -----~~~~i~~~~~~~~~G----~k~~a~n~g~~~----a~~~~i~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v 120 (232)
T cd06437 59 -----QGVNIKHVRRADRTG----YKAGALAEGMKV----AKGEYVAIFDADFV-PPPDFLQKTPPYFADP----KLGFV 120 (232)
T ss_pred -----cCCceEEEECCCCCC----CchHHHHHHHHh----CCCCEEEEEcCCCC-CChHHHHHhhhhhcCC----CeEEE
Confidence 013578888877555 699999999994 68999999999998 6999999977787787 89999
Q ss_pred ecCccccCCCCCCcccch-----hhHHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcc
Q 001576 545 QFPQRFDGIDRHDRYANR-----NIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCC 619 (1050)
Q Consensus 545 Q~PQ~F~~id~~D~y~n~-----~~vFfdi~~~glDg~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~ 619 (1050)
|.+..+.+.+.+ +-.. ...+|.+...+......
T Consensus 121 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 158 (232)
T cd06437 121 QTRWGHINANYS--LLTRVQAMSLDYHFTIEQVARSSTGL---------------------------------------- 158 (232)
T ss_pred ecceeeEcCCCc--hhhHhhhhhHHhhhhHhHhhHhhcCC----------------------------------------
Confidence 997766554321 1000 00001100000000000
Q ss_pred cCCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhhhhcCCchHH
Q 001576 620 CCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVF 699 (1050)
Q Consensus 620 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f 699 (1050)
+..-.|+...|
T Consensus 159 ---------------------------------------------------------------------~~~~~g~~~~~ 169 (232)
T cd06437 159 ---------------------------------------------------------------------FFNFNGTAGVW 169 (232)
T ss_pred ---------------------------------------------------------------------eEEeccchhhh
Confidence 00012556678
Q ss_pred HhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecCCCccccccC
Q 001576 700 IASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSA 779 (1050)
Q Consensus 700 ~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~af~G~a 779 (1050)
|++++++.||+++ .++.||++++++++.+||+++|+ |+..+ +...
T Consensus 170 rr~~~~~vgg~~~---------------------------------~~~~ED~~l~~rl~~~G~~~~~~-~~~~v-~~~~ 214 (232)
T cd06437 170 RKECIEDAGGWNH---------------------------------DTLTEDLDLSYRAQLKGWKFVYL-DDVVV-PAEL 214 (232)
T ss_pred hHHHHHHhCCCCC---------------------------------CcchhhHHHHHHHHHCCCeEEEe-cccee-eeeC
Confidence 8888899999875 36789999999999999999999 44443 8999
Q ss_pred CCCHHHHHHHhHhhhchh
Q 001576 780 PINLSDRLHQVLRWALGS 797 (1050)
Q Consensus 780 P~tl~~~l~QR~RWA~G~ 797 (1050)
|+|+.++++||+||++|.
T Consensus 215 ~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 215 PASMSAYRSQQHRWSKGP 232 (232)
T ss_pred CcCHHHHHHHHHHhccCC
Confidence 999999999999999984
No 24
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.90 E-value=1.6e-22 Score=214.62 Aligned_cols=233 Identities=20% Similarity=0.285 Sum_probs=164.9
Q ss_pred CCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCccc
Q 001576 305 APVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEF 384 (1050)
Q Consensus 305 p~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~ 384 (1050)
|.|.|+||++| |+ ..+..|+.|+++++||.+++.++|.|||+.+-|.+.+.+. +
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~---~------------------- 54 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARAL---R------------------- 54 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHh---c-------------------
Confidence 67999999999 86 7889999999999999888999999999887332221110 0
Q ss_pred ccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcCCCCc
Q 001576 385 YFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGAL 464 (1050)
Q Consensus 385 yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~~ 464 (1050)
. +
T Consensus 55 ----------------------------------------~----~---------------------------------- 56 (241)
T cd06427 55 ----------------------------------------L----P---------------------------------- 56 (241)
T ss_pred ----------------------------------------c----C----------------------------------
Confidence 0 0
Q ss_pred cccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEE
Q 001576 465 DVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYV 544 (1050)
Q Consensus 465 d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~V 544 (1050)
.-.+++++.+.+ ...|++|+|++++. ++|+||+.+|+|.. ..|++|.+++.+|.+. ..++++|
T Consensus 57 -----~~~~i~~~~~~~-----~~G~~~a~n~g~~~----a~gd~i~~~DaD~~-~~~~~l~~~~~~~~~~--~~~v~~~ 119 (241)
T cd06427 57 -----SIFRVVVVPPSQ-----PRTKPKACNYALAF----ARGEYVVIYDAEDA-PDPDQLKKAVAAFARL--DDKLACV 119 (241)
T ss_pred -----CCeeEEEecCCC-----CCchHHHHHHHHHh----cCCCEEEEEcCCCC-CChHHHHHHHHHHHhc--CCCEEEE
Confidence 001244443322 23799999999994 78999999999998 6899999999988621 1389999
Q ss_pred ecCccccCCCCCC---cccchhhHHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccC
Q 001576 545 QFPQRFDGIDRHD---RYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCC 621 (1050)
Q Consensus 545 Q~PQ~F~~id~~D---~y~n~~~vFfdi~~~glDg~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~ 621 (1050)
|.+..+++...+- .+......+|+..+++....+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 159 (241)
T cd06427 120 QAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPI---------------------------------------- 159 (241)
T ss_pred eCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCee----------------------------------------
Confidence 9998877543210 000000111111122111111100
Q ss_pred CCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhhhhcCCchHHHh
Q 001576 622 GGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIA 701 (1050)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~ 701 (1050)
...|++..||+
T Consensus 160 ---------------------------------------------------------------------~~~g~~~~~rr 170 (241)
T cd06427 160 ---------------------------------------------------------------------PLGGTSNHFRT 170 (241)
T ss_pred ---------------------------------------------------------------------ecCCchHHhhH
Confidence 01255567788
Q ss_pred hhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecCCCccccccCCC
Q 001576 702 STLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPI 781 (1050)
Q Consensus 702 sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~af~G~aP~ 781 (1050)
+++++.||+.+ ...+||++++++++.+||+++|+ +... ++..|+
T Consensus 171 ~~~~~vgg~~~---------------------------------~~~~eD~~l~~rl~~~G~r~~~~-~~~~--~~~~~~ 214 (241)
T cd06427 171 DVLRELGGWDP---------------------------------FNVTEDADLGLRLARAGYRTGVL-NSTT--LEEANN 214 (241)
T ss_pred HHHHHcCCCCc---------------------------------ccchhhHHHHHHHHHCCceEEEe-cccc--cccCcH
Confidence 88888998764 36789999999999999999999 4332 789999
Q ss_pred CHHHHHHHhHhhhchhHHHHHh
Q 001576 782 NLSDRLHQVLRWALGSVEIFLS 803 (1050)
Q Consensus 782 tl~~~l~QR~RWA~G~lQil~~ 803 (1050)
|+.++++||.||+.|.+|++..
T Consensus 215 ~~~~~~~q~~Rw~~g~~~~~~~ 236 (241)
T cd06427 215 ALGNWIRQRSRWIKGYMQTWLV 236 (241)
T ss_pred hHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999999999999964
No 25
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.89 E-value=3.8e-22 Score=209.19 Aligned_cols=173 Identities=28% Similarity=0.417 Sum_probs=121.5
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCccccCC
Q 001576 474 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGI 553 (1050)
Q Consensus 474 lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~F~~i 553 (1050)
+.++..++.+ +.||||+|.+++.+. .+++||+.+|+|-. ..|++|.+.+.+|.+| +++.||+|+.+.+.
T Consensus 58 i~~i~~~~~~----G~~~~a~n~g~~~a~--~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~~ 126 (236)
T cd06435 58 FRFFHVEPLP----GAKAGALNYALERTA--PDAEIIAVIDADYQ-VEPDWLKRLVPIFDDP----RVGFVQAPQDYRDG 126 (236)
T ss_pred EEEEEcCCCC----CCchHHHHHHHHhcC--CCCCEEEEEcCCCC-cCHHHHHHHHHHhcCC----CeeEEecCccccCC
Confidence 5666666533 469999999999632 46899999999986 6999999999998776 89999998765432
Q ss_pred CCCCcccc----hhhHHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccc
Q 001576 554 DRHDRYAN----RNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKS 629 (1050)
Q Consensus 554 d~~D~y~n----~~~vFfdi~~~glDg~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 629 (1050)
.. ..+.- ....+|...++..........
T Consensus 127 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 158 (236)
T cd06435 127 EE-SLFKRMCYAEYKGFFDIGMVSRNERNAIIQ----------------------------------------------- 158 (236)
T ss_pred Cc-cHHHHHHhHHHHHHHHHHhccccccCceEE-----------------------------------------------
Confidence 11 11100 000001111101000111111
Q ss_pred cccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhhhhcCCchHHHhhhhhhcCC
Q 001576 630 KKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGG 709 (1050)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~sal~e~GG 709 (1050)
.|+...+|++++.++||
T Consensus 159 ---------------------------------------------------------------~g~~~~~rr~~~~~iGg 175 (236)
T cd06435 159 ---------------------------------------------------------------HGTMCLIRRSALDDVGG 175 (236)
T ss_pred ---------------------------------------------------------------ecceEEEEHHHHHHhCC
Confidence 25555667777788898
Q ss_pred CCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecCCCccccccCCCCHHHHHHH
Q 001576 710 LPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQ 789 (1050)
Q Consensus 710 ~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~af~G~aP~tl~~~l~Q 789 (1050)
+++ ....||++++++++.+||++.|++. ..+ +...|.|+.++++|
T Consensus 176 f~~---------------------------------~~~~eD~dl~~r~~~~G~~~~~~~~-~~~-~~~~~~~~~~~~~q 220 (236)
T cd06435 176 WDE---------------------------------WCITEDSELGLRMHEAGYIGVYVAQ-SYG-HGLIPDTFEAFKKQ 220 (236)
T ss_pred CCC---------------------------------ccccchHHHHHHHHHCCcEEEEcch-hhc-cCcCcccHHHHHHH
Confidence 865 3578999999999999999999954 333 89999999999999
Q ss_pred hHhhhchhHHHHHh
Q 001576 790 VLRWALGSVEIFLS 803 (1050)
Q Consensus 790 R~RWA~G~lQil~~ 803 (1050)
|.||++|++|++.+
T Consensus 221 ~~rw~~g~~~~~~~ 234 (236)
T cd06435 221 RFRWAYGAVQILKK 234 (236)
T ss_pred HHHHhcchhhhhhc
Confidence 99999999999964
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.86 E-value=1.2e-22 Score=211.40 Aligned_cols=224 Identities=25% Similarity=0.383 Sum_probs=134.0
Q ss_pred CCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCccc
Q 001576 305 APVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEF 384 (1050)
Q Consensus 305 p~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~ 384 (1050)
|.|.|+||++| |+. .+..||.|+++++|| ++.++|+||+..+-|.+.+.+
T Consensus 1 P~v~Vvip~~~---~~~-~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~~~------------------------ 50 (228)
T PF13641_consen 1 PRVSVVIPAYN---EDD-VLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEILRA------------------------ 50 (228)
T ss_dssp --EEEE--BSS----HH-HHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTHHH------------------------
T ss_pred CEEEEEEEecC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHHHH------------------------
Confidence 78999999998 764 899999999999995 599999999987633222211
Q ss_pred ccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcCCCCc
Q 001576 385 YFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGAL 464 (1050)
Q Consensus 385 yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~~ 464 (1050)
++++ .|.
T Consensus 51 -------------------------------------~~~~---~~~--------------------------------- 57 (228)
T PF13641_consen 51 -------------------------------------LAAR---YPR--------------------------------- 57 (228)
T ss_dssp -------------------------------------HHHT---TGG---------------------------------
T ss_pred -------------------------------------HHHH---cCC---------------------------------
Confidence 1111 000
Q ss_pred cccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEE
Q 001576 465 DVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYV 544 (1050)
Q Consensus 465 d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~V 544 (1050)
-++.++.+.+.+| ...|++|+|.+++. ..+++|+++|+|.+ +.|++|++++.+|.+| +++.|
T Consensus 58 -------~~v~vi~~~~~~g--~~~k~~a~n~~~~~----~~~d~i~~lD~D~~-~~p~~l~~~~~~~~~~----~~~~v 119 (228)
T PF13641_consen 58 -------VRVRVIRRPRNPG--PGGKARALNEALAA----ARGDYILFLDDDTV-LDPDWLERLLAAFADP----GVGAV 119 (228)
T ss_dssp --------GEEEEE----HH--HHHHHHHHHHHHHH-------SEEEEE-SSEE-E-CHHHHHHHHHHHBS----S--EE
T ss_pred -------CceEEeecCCCCC--cchHHHHHHHHHHh----cCCCEEEEECCCcE-ECHHHHHHHHHHHHhC----CCCeE
Confidence 0257777665321 23699999999995 56999999999997 5999999999999887 89999
Q ss_pred ecCccccCCCCCCcccchhhHHHHhh----cccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCccc
Q 001576 545 QFPQRFDGIDRHDRYANRNIVFFDIN----MLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCC 620 (1050)
Q Consensus 545 Q~PQ~F~~id~~D~y~n~~~vFfdi~----~~glDg~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c 620 (1050)
|.+..+++ +.+ .+......++... ..+....+.+.+.
T Consensus 120 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 160 (228)
T PF13641_consen 120 GGPVFPDN-DRN-WLTRLQDLFFARWHLRFRSGRRALGVAFLS------------------------------------- 160 (228)
T ss_dssp EEEEEETT-CCC-EEEE-TT--S-EETTTS-TT-B----S-B--------------------------------------
T ss_pred eeeEeecC-CCC-HHHHHHHHHHhhhhhhhhhhhcccceeecc-------------------------------------
Confidence 98886664 221 1111111111000 0111111111112
Q ss_pred CCCCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhhhhcCCchHHH
Q 001576 621 CGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFI 700 (1050)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~ 700 (1050)
|++..||
T Consensus 161 -------------------------------------------------------------------------G~~~~~r 167 (228)
T PF13641_consen 161 -------------------------------------------------------------------------GSGMLFR 167 (228)
T ss_dssp --------------------------------------------------------------------------TEEEEE
T ss_pred -------------------------------------------------------------------------CcEEEEE
Confidence 5555666
Q ss_pred hhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecCCCccccccCC
Q 001576 701 ASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAP 780 (1050)
Q Consensus 701 ~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~af~G~aP 780 (1050)
++++++.||+++ ....||.++++++.++||+++|++ ... .+...|
T Consensus 168 r~~~~~~g~fd~---------------------------------~~~~eD~~l~~r~~~~G~~~~~~~-~~~-v~~~~~ 212 (228)
T PF13641_consen 168 RSALEEVGGFDP---------------------------------FILGEDFDLCLRLRAAGWRIVYAP-DAL-VYHEEP 212 (228)
T ss_dssp HHHHHHH-S--S---------------------------------SSSSHHHHHHHHHHHTT--EEEEE-EEE-EEE--S
T ss_pred HHHHHHhCCCCC---------------------------------CCcccHHHHHHHHHHCCCcEEEEC-CcE-EEEeCC
Confidence 777778888764 367799999999999999999995 333 389999
Q ss_pred CCHHHHHHHhHhhhch
Q 001576 781 INLSDRLHQVLRWALG 796 (1050)
Q Consensus 781 ~tl~~~l~QR~RWA~G 796 (1050)
.|++++++||.||+.|
T Consensus 213 ~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 213 SSLKAFFKQRFRWSRG 228 (228)
T ss_dssp SSTHHHHHHHHHHH--
T ss_pred CCHHHHHHHHhccCcC
Confidence 9999999999999987
No 27
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.83 E-value=8.5e-19 Score=212.23 Aligned_cols=172 Identities=19% Similarity=0.282 Sum_probs=127.3
Q ss_pred CCCccchhhHHHHhh---ccCCCCCE--EEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCcc-ccCCCCC---C
Q 001576 487 HHKKAGAMNALVRVS---AVLTNAPF--ILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQR-FDGIDRH---D 557 (1050)
Q Consensus 487 hh~KAGalNallrvS---av~tngp~--il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~-F~~id~~---D 557 (1050)
...||.|||.++... .-.+.+.| |+++|||-+ ++|++|+. |-++++. + -+||.|=. ..|...+ .
T Consensus 139 p~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~-~~P~~L~~-~~~~~~~----~-~~iQ~pV~~~~~~~~~~l~~ 211 (703)
T PRK15489 139 PTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDV-LHPLELKY-FNYLLPR----K-DLVQLPVLSLERKWYEWVAG 211 (703)
T ss_pred CCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCC-CChhHHHH-HHhhcCC----c-ceeeeeeccCCCccccHHHH
Confidence 347999999988742 11235555 999999997 79999975 5666643 1 36998721 2221111 2
Q ss_pred cccchhhHHHHhhcccccCCCCceee-ccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccccccCCCC
Q 001576 558 RYANRNIVFFDINMLGLDGIQGPVYV-GTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKGDKR 636 (1050)
Q Consensus 558 ~y~n~~~vFfdi~~~glDg~qgp~yv-GTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 636 (1050)
.|+.+....|+..|+++..++|++.+ |||++|||.||-.
T Consensus 212 ~~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~~---------------------------------------- 251 (703)
T PRK15489 212 TYMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALLA---------------------------------------- 251 (703)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHHH----------------------------------------
Confidence 36778888889999999999999886 7999999999820
Q ss_pred cccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhhhhcCCchHHHhhhhhhcCCCCCCCCc
Q 001576 637 GFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNS 716 (1050)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~sal~e~GG~~~~~~~ 716 (1050)
+.+.||+.
T Consensus 252 -------------------------------------------------------------------l~~~gg~~----- 259 (703)
T PRK15489 252 -------------------------------------------------------------------LMKERGNQ----- 259 (703)
T ss_pred -------------------------------------------------------------------HHHhcCCC-----
Confidence 11234422
Q ss_pred hhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecC---------------------CCccc
Q 001576 717 TSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVP---------------------KRPAF 775 (1050)
Q Consensus 717 ~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p---------------------~~~af 775 (1050)
+|..+++|||+++|+||+.+|||+.|+.- ...+.
T Consensus 260 -------------------------~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 314 (703)
T PRK15489 260 -------------------------PFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCV 314 (703)
T ss_pred -------------------------CCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceee
Confidence 46778999999999999999999999321 12455
Q ss_pred cccCCCCHHHHHHHhHhhhchhH-HHHH
Q 001576 776 KGSAPINLSDRLHQVLRWALGSV-EIFL 802 (1050)
Q Consensus 776 ~G~aP~tl~~~l~QR~RWA~G~l-Qil~ 802 (1050)
.+..|.|+.+.++||.||..|-. |...
T Consensus 315 re~fP~~~~a~~rQk~RW~~Gi~~q~~~ 342 (703)
T PRK15489 315 REYFPDTFRTAYRQKARWVLGIAFQGWE 342 (703)
T ss_pred hhhCcHHHHHHHHHHHHHHhHHHHhhHH
Confidence 78899999999999999999977 8764
No 28
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.82 E-value=1.2e-18 Score=198.47 Aligned_cols=234 Identities=17% Similarity=0.197 Sum_probs=157.4
Q ss_pred CCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCc
Q 001576 303 RLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAP 382 (1050)
Q Consensus 303 ~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~P 382 (1050)
..|.|.|+||++| |++ .+.+++.|++++|||. +.++|.||++++-|.+.+.+
T Consensus 39 ~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~~---------------------- 90 (373)
T TIGR03472 39 AWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVRR---------------------- 90 (373)
T ss_pred CCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHHH----------------------
Confidence 4799999999999 885 5679999999999995 78999999887633221111
Q ss_pred ccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcCCC
Q 001576 383 EFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEG 462 (1050)
Q Consensus 383 e~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g 462 (1050)
+.++ ||.
T Consensus 91 ---------------------------------------~~~~------------------------~p~---------- 97 (373)
T TIGR03472 91 ---------------------------------------LRAD------------------------FPD---------- 97 (373)
T ss_pred ---------------------------------------HHHh------------------------CCC----------
Confidence 1100 000
Q ss_pred CccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEE
Q 001576 463 ALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLC 542 (1050)
Q Consensus 463 ~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~ 542 (1050)
.++.++.+.++.| .+.|++|+|++++. +.+++|+.+|+|.. +.|++|++.+..|.|| +++
T Consensus 98 ---------~~i~~v~~~~~~G--~~~K~~~l~~~~~~----a~ge~i~~~DaD~~-~~p~~L~~lv~~~~~~----~v~ 157 (373)
T TIGR03472 98 ---------ADIDLVIDARRHG--PNRKVSNLINMLPH----ARHDILVIADSDIS-VGPDYLRQVVAPLADP----DVG 157 (373)
T ss_pred ---------CceEEEECCCCCC--CChHHHHHHHHHHh----ccCCEEEEECCCCC-cChhHHHHHHHHhcCC----Ccc
Confidence 1356665444333 55799999998874 78999999999997 6999999999999888 899
Q ss_pred EEecCccccCCCCCCcccchhhHHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCC
Q 001576 543 YVQFPQRFDGIDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCG 622 (1050)
Q Consensus 543 ~VQ~PQ~F~~id~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~ 622 (1050)
.|+.+.+.. +.+ .+.++....+ .+.. |-...+... +
T Consensus 158 ~V~~~~~~~--~~~-~~~~~l~~~~------~~~~-----------~~~~~~~~~-~----------------------- 193 (373)
T TIGR03472 158 LVTCLYRGR--PVP-GFWSRLGAMG------INHN-----------FLPSVMVAR-A----------------------- 193 (373)
T ss_pred eEeccccCC--CCC-CHHHHHHHHH------hhhh-----------hhHHHHHHH-h-----------------------
Confidence 999864422 111 1111111000 0000 000000000 0
Q ss_pred CCccccccccCCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhhhhcCCchHHHhh
Q 001576 623 GSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIAS 702 (1050)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~s 702 (1050)
. .......|++-.||++
T Consensus 194 -------------------------------------------------------------~--~~~~~~~G~~~a~RR~ 210 (373)
T TIGR03472 194 -------------------------------------------------------------L--GRARFCFGATMALRRA 210 (373)
T ss_pred -------------------------------------------------------------c--cCCccccChhhheeHH
Confidence 0 0000124777788999
Q ss_pred hhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecCCCccccccCCCC
Q 001576 703 TLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPIN 782 (1050)
Q Consensus 703 al~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~af~G~aP~t 782 (1050)
+++++||++.. ..+++||++++.++.++||++.|.+. ... ....|+|
T Consensus 211 ~l~~iGGf~~~-------------------------------~~~~~ED~~l~~~i~~~G~~v~~~~~-~v~-~~~~~~s 257 (373)
T TIGR03472 211 TLEAIGGLAAL-------------------------------AHHLADDYWLGELVRALGLRVVLAPV-VVD-TDVHETS 257 (373)
T ss_pred HHHHcCChHHh-------------------------------cccchHHHHHHHHHHHcCCeEEecch-hhh-cCCCccC
Confidence 99999998641 13678999999999999999999854 333 6788899
Q ss_pred HHHHHHHhHhhhchh
Q 001576 783 LSDRLHQVLRWALGS 797 (1050)
Q Consensus 783 l~~~l~QR~RWA~G~ 797 (1050)
++++++||.||++..
T Consensus 258 ~~~~~~q~~RW~r~~ 272 (373)
T TIGR03472 258 FATLLAHELRWSRTI 272 (373)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999997443
No 29
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.82 E-value=4.1e-20 Score=197.90 Aligned_cols=52 Identities=21% Similarity=0.219 Sum_probs=46.2
Q ss_pred ccccchHHHHHHHHhCCcEEEE--ecCCCccccccCCCCHHHHHHHhHhhhchhHH
Q 001576 746 GSITEDILTGFKMHCRGWKSVY--CVPKRPAFKGSAPINLSDRLHQVLRWALGSVE 799 (1050)
Q Consensus 746 gsITED~~Tg~rLh~~GWrsvY--~~p~~~af~G~aP~tl~~~l~QR~RWA~G~lQ 799 (1050)
.+++||.+++++|..+||++.| ++.. .+ +.++|+|+.++++||+||++|++.
T Consensus 190 ~~~~ED~~l~~~l~~~G~~~~~~~~~~a-~~-~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 190 LDLGEDRILCTLLLKAGPKRKYLYVPGA-VA-ETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred HhHhcccceeHHHhccCCccEEEEeccc-EE-EEECCCCHHHHHHHhHhhhccccc
Confidence 4799999999999999999999 7433 33 899999999999999999999864
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.79 E-value=1.4e-18 Score=179.49 Aligned_cols=122 Identities=18% Similarity=0.218 Sum_probs=91.9
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCccccccc
Q 001576 309 VFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEFYFSQ 388 (1050)
Q Consensus 309 vfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~yFs~ 388 (1050)
|+|||+| |+ ..+..||.|+++.+||.+++.++|.|||++.-|.+.+.+ +
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~----~----------------------- 49 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEF----A----------------------- 49 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHH----H-----------------------
Confidence 6899998 75 789999999999999998899999999987632221110 0
Q ss_pred ccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcCCCCccccC
Q 001576 389 KIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEG 468 (1050)
Q Consensus 389 k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~~d~~~ 468 (1050)
. +
T Consensus 50 ---------------------------------~--~------------------------------------------- 51 (229)
T cd04192 50 ---------------------------------A--A------------------------------------------- 51 (229)
T ss_pred ---------------------------------H--h-------------------------------------------
Confidence 0 0
Q ss_pred CCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCc
Q 001576 469 KELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQ 548 (1050)
Q Consensus 469 ~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ 548 (1050)
...|++.++.++. + ....|+.|+|.++.. ++++||+++|+|.+ ..|++|++.+..|.++ ..+.|+.++
T Consensus 52 ~~~~~v~~~~~~~--~-~~~g~~~a~n~g~~~----~~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~ 119 (229)
T cd04192 52 KPNFQLKILNNSR--V-SISGKKNALTTAIKA----AKGDWIVTTDADCV-VPSNWLLTFVAFIQKE----QIGLVAGPV 119 (229)
T ss_pred CCCcceEEeeccC--c-ccchhHHHHHHHHHH----hcCCEEEEECCCcc-cCHHHHHHHHHHhhcC----CCcEEeeee
Confidence 0012355555443 1 235788999999984 68999999999997 6899999999977665 677888888
Q ss_pred ccc
Q 001576 549 RFD 551 (1050)
Q Consensus 549 ~F~ 551 (1050)
.+.
T Consensus 120 ~~~ 122 (229)
T cd04192 120 IYF 122 (229)
T ss_pred eec
Confidence 876
No 31
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.77 E-value=4e-18 Score=175.56 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=42.2
Q ss_pred cccchHHHHHHHHhCCcEEEEecCCCccccccCCCCHHHHHHHhHhhhch
Q 001576 747 SITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALG 796 (1050)
Q Consensus 747 sITED~~Tg~rLh~~GWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWA~G 796 (1050)
.+.||+++++++..+||++.|+.. .. .+...|.+++++++||.||++.
T Consensus 148 ~~~eD~~l~~rl~~~G~~i~~~~~-~~-~~~~~~~~~~~~~~q~~rw~~~ 195 (196)
T cd02520 148 YLAEDYFLGKLIWRLGYRVVLSPY-VV-MQPLGSTSLASFWRRQLRWSRT 195 (196)
T ss_pred HHHHHHHHHHHHHHcCCeEEEcch-he-eccCCcccHHHHHHHHHHHhcc
Confidence 468999999999999999999954 33 3899999999999999999863
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.74 E-value=5.7e-17 Score=169.41 Aligned_cols=59 Identities=25% Similarity=0.213 Sum_probs=51.9
Q ss_pred CCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCccccCCC
Q 001576 487 HHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGID 554 (1050)
Q Consensus 487 hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~F~~id 554 (1050)
+..|++|+|.+++. +.++||+++|+|.+ +.+++|++++..|.|| +++.|+..+.+.+.+
T Consensus 62 ~~g~~~a~n~g~~~----a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~----~v~~v~~~~~~~~~~ 120 (235)
T cd06434 62 HPGKRRALAEGIRH----VTTDIVVLLDSDTV-WPPNALPEMLKPFEDP----KVGGVGTNQRILRPR 120 (235)
T ss_pred CCChHHHHHHHHHH----hCCCEEEEECCCce-eChhHHHHHHHhccCC----CEeEEcCceEeecCc
Confidence 34599999999985 58999999999997 6899999999988887 899999999887764
No 33
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.72 E-value=1.4e-16 Score=168.65 Aligned_cols=127 Identities=20% Similarity=0.287 Sum_probs=97.3
Q ss_pred CCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCC
Q 001576 301 PNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPR 380 (1050)
Q Consensus 301 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR 380 (1050)
.+..|.|.|+|||+| |+ ..+..++.|+++.+||.+++.++|+|||+++-|.+.+.+
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~-------------------- 80 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE-------------------- 80 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH--------------------
Confidence 456889999999998 76 678999999999999988899999999998732211111
Q ss_pred CcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcC
Q 001576 381 APEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGS 460 (1050)
Q Consensus 381 ~Pe~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~ 460 (1050)
+.++
T Consensus 81 -----------------------------------------~~~~----------------------------------- 84 (251)
T cd06439 81 -----------------------------------------YADK----------------------------------- 84 (251)
T ss_pred -----------------------------------------HhhC-----------------------------------
Confidence 0000
Q ss_pred CCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCcc
Q 001576 461 EGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKK 540 (1050)
Q Consensus 461 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~ 540 (1050)
++.++..+++ ..|++|+|.+++. .++++|+.+|+|.+ +.+++|++.+..|.++ +
T Consensus 85 ------------~v~~i~~~~~-----~g~~~a~n~gi~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~ 138 (251)
T cd06439 85 ------------GVKLLRFPER-----RGKAAALNRALAL----ATGEIVVFTDANAL-LDPDALRLLVRHFADP----S 138 (251)
T ss_pred ------------cEEEEEcCCC-----CChHHHHHHHHHH----cCCCEEEEEccccC-cCHHHHHHHHHHhcCC----C
Confidence 1444544442 3599999999995 67899999999998 4699999999998776 7
Q ss_pred EEEEecCccccCC
Q 001576 541 LCYVQFPQRFDGI 553 (1050)
Q Consensus 541 v~~VQ~PQ~F~~i 553 (1050)
++.|+......+.
T Consensus 139 ~~~v~~~~~~~~~ 151 (251)
T cd06439 139 VGAVSGELVIVDG 151 (251)
T ss_pred ccEEEeEEEecCC
Confidence 8889987766543
No 34
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.71 E-value=1.3e-15 Score=174.40 Aligned_cols=133 Identities=21% Similarity=0.194 Sum_probs=93.6
Q ss_pred CCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCC
Q 001576 301 PNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPR 380 (1050)
Q Consensus 301 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR 380 (1050)
++..|.|.|+||++| |. ..+..++-|+++.|||. ++.++|.|||+.+-|.+-+.+
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~-------------------- 90 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA-------------------- 90 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH--------------------
Confidence 457899999999999 86 67889999999999995 589999999998833222211
Q ss_pred CcccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcC
Q 001576 381 APEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGS 460 (1050)
Q Consensus 381 ~Pe~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~ 460 (1050)
+.++ .|.
T Consensus 91 -----------------------------------------~~~~---~~~----------------------------- 97 (384)
T TIGR03469 91 -----------------------------------------AARA---YGR----------------------------- 97 (384)
T ss_pred -----------------------------------------HHHh---cCC-----------------------------
Confidence 0000 000
Q ss_pred CCCccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCC-CCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCc
Q 001576 461 EGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLT-NAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGK 539 (1050)
Q Consensus 461 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~t-ngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~ 539 (1050)
-+++.++..+.+|. .-..|+.|+|.+++.+.... .+++|+.+|+|.. ..|++|++.+..+.++
T Consensus 98 ----------~~~i~vi~~~~~~~-g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~---- 161 (384)
T TIGR03469 98 ----------GDRLTVVSGQPLPP-GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAE---- 161 (384)
T ss_pred ----------CCcEEEecCCCCCC-CCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhC----
Confidence 01355555433332 34578899999999643222 2899999999997 6899999999998875
Q ss_pred cEEEEecC
Q 001576 540 KLCYVQFP 547 (1050)
Q Consensus 540 ~v~~VQ~P 547 (1050)
++++|..+
T Consensus 162 ~~~~vs~~ 169 (384)
T TIGR03469 162 GLDLVSLM 169 (384)
T ss_pred CCCEEEec
Confidence 34555443
No 35
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.63 E-value=1.2e-14 Score=152.10 Aligned_cols=76 Identities=13% Similarity=0.112 Sum_probs=63.1
Q ss_pred CCchHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecCCCc
Q 001576 694 GQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRP 773 (1050)
Q Consensus 694 G~s~~f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~ 773 (1050)
|....++++++.+.||+++. -...||.+++++++++|+++.|++. ..
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~--------------------------------~~~~eD~~l~~r~~~~G~~~~~~~~-~~ 204 (249)
T cd02525 158 VHHGAYRREVFEKVGGFDES--------------------------------LVRNEDAELNYRLRKAGYKIWLSPD-IR 204 (249)
T ss_pred cccceEEHHHHHHhCCCCcc--------------------------------cCccchhHHHHHHHHcCcEEEEcCC-eE
Confidence 55557778888899998762 1346999999999999999999944 43
Q ss_pred cccccCCCCHHHHHHHhHhhhchhHHHHHh
Q 001576 774 AFKGSAPINLSDRLHQVLRWALGSVEIFLS 803 (1050)
Q Consensus 774 af~G~aP~tl~~~l~QR~RWA~G~lQil~~ 803 (1050)
+ ....+.+++.+++|+.||+.|..|.+..
T Consensus 205 ~-~~~~~~s~~~~~~~~~r~~~~~~~~~~~ 233 (249)
T cd02525 205 V-YYYPRSTLKKLARQYFRYGKWRARTLRK 233 (249)
T ss_pred E-EEcCCCCHHHHHHHHHHHhhhhHHHHHh
Confidence 3 6788999999999999999999999974
No 36
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.63 E-value=3.1e-15 Score=153.14 Aligned_cols=50 Identities=32% Similarity=0.490 Sum_probs=45.7
Q ss_pred ccccchHHHHHHHHhCCcEEEEecCCCccccccCCCCHHHHHHHhHhhhchh
Q 001576 746 GSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGS 797 (1050)
Q Consensus 746 gsITED~~Tg~rLh~~GWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWA~G~ 797 (1050)
.+++||+++++++.++||++.|++.. .++.++|.|+.++++||+||+.|.
T Consensus 94 ~~~~ED~~l~~~l~~~G~~~~~~~~~--~~~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 94 FSIGEDMDLGFRLRRAGYRIVYVPDA--IVYTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred ccccchHHHHHHHHHCCCEEEEeccc--ceeeeCCCCHHHHHHHHHHHHhhh
Confidence 58999999999999999999999543 238999999999999999999998
No 37
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=1.6e-12 Score=149.17 Aligned_cols=227 Identities=19% Similarity=0.372 Sum_probs=155.4
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhh-cCcCCCccEEEEecCccccC
Q 001576 474 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGKKLCYVQFPQRFDG 552 (1050)
Q Consensus 474 lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~-~Dp~~g~~v~~VQ~PQ~F~~ 552 (1050)
+.|--|.+ |-..||||+-...|-=+ +.-.|+++||||-+ -..+.+-+.+-.| .+| +.|.+||--.--|
T Consensus 214 ifYRrRr~----n~~RKaGNIaDfcrRwG--~~Y~~MlVLDADSv-Mtgd~lvrLv~~ME~~P----~aGlIQt~P~~~g 282 (736)
T COG2943 214 IFYRRRRR----NVKRKAGNIADFCRRWG--SAYSYMLVLDADSV-MTGDCLVRLVRLMEANP----DAGLIQTSPKASG 282 (736)
T ss_pred eeeehHhh----hhcccccCHHHHHHHhC--cccceEEEeecccc-cCchHHHHHHHHHhhCC----CCceeecchhhcC
Confidence 55555555 56799999999888533 45589999999997 5889999888888 577 8999999655444
Q ss_pred CCCCCcccchhhHHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccccc
Q 001576 553 IDRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKK 632 (1050)
Q Consensus 553 id~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 632 (1050)
.| |.|=.+.|=+ ..+-||+. + +|. -.|. ++
T Consensus 283 g~---------TL~AR~qQFa-trvYGpl~-~----------~GL-------------awW~-------~~--------- 312 (736)
T COG2943 283 GD---------TLYARCQQFA-TRVYGPLF-T----------AGL-------------AWWQ-------LG--------- 312 (736)
T ss_pred cc---------hHHHHHHHHH-HHHhchHH-h----------hhh-------------HHHh-------cc---------
Confidence 32 3444433311 11122211 1 111 0110 00
Q ss_pred CCCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhhhhcCCchHHHhhhhhhcCCCCC
Q 001576 633 GDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPE 712 (1050)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~sal~e~GG~~~ 712 (1050)
| .+..|...+.|..+.++.-|.|.
T Consensus 313 -E-------------------------------------------------------s~yWGHNAIIRt~aF~~hcgLp~ 336 (736)
T COG2943 313 -E-------------------------------------------------------SHYWGHNAIIRTKAFIEHCGLPP 336 (736)
T ss_pred -c-------------------------------------------------------cccccccceeechhhHHhcCCCC
Confidence 0 12347777777777777777664
Q ss_pred CCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecCCCccccccCCCCHHHHHHHhHh
Q 001576 713 GTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLR 792 (1050)
Q Consensus 713 ~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~af~G~aP~tl~~~l~QR~R 792 (1050)
- --+-..|- ..++.|+..+-.|.+.||-+.- .+++...|++.|.|+.|++++-+|
T Consensus 337 L------------------pG~~pFgG------~ilSHDfvEAALmRRaGW~v~i-a~dL~GSyEE~PpnLlD~l~RDRR 391 (736)
T COG2943 337 L------------------PGRGPFGG------HILSHDFVEAALMRRAGWGVWI-AYDLDGSYEELPPNLLDELKRDRR 391 (736)
T ss_pred C------------------CCCCCCCc------cccchHHHHHHHHhhcCceEEE-eccCCCchhhCCchHHHHHhhhhH
Confidence 1 01111121 3578999999999999996544 477888899999999999999999
Q ss_pred hhchhHHHHHhhccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 001576 793 WALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTLPAICLL 849 (1050)
Q Consensus 793 WA~G~lQil~~k~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll 849 (1050)
|++|++|.+. ++ ..++|.|..|+.++.+++.|+++..+++++++-.+...
T Consensus 392 WC~GNLqh~r-----l~--~~~GlHwvsR~h~~tGVmsYlsaPlWfl~ll~g~al~~ 441 (736)
T COG2943 392 WCHGNLQHFR-----LF--LVKGLHWVSRAHFLTGVMSYLSAPLWFLFLLLGTALQA 441 (736)
T ss_pred hhhcchhhce-----ee--ccCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999873 33 26999999999999999999888777666655544433
No 38
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.44 E-value=8.5e-13 Score=136.13 Aligned_cols=115 Identities=16% Similarity=0.079 Sum_probs=80.2
Q ss_pred cEEEEeccCCCCCCCCCccchhhHHHHhhcc-------CCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEe
Q 001576 473 RLVYVSREKRPGYNHHKKAGAMNALVRVSAV-------LTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQ 545 (1050)
Q Consensus 473 ~lvYvsRekrpg~~hh~KAGalNallrvSav-------~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ 545 (1050)
++.++.++... .+..|++|+|.+++.+.- -..+++|+++|+|.. ..|++|+++..+|.|| +++.||
T Consensus 51 ~v~~i~~~~~~--~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v~ 123 (191)
T cd06436 51 RVHLLRRHLPN--ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR-LDPNALEAVAPYFSDP----RVAGTQ 123 (191)
T ss_pred cEEEEeccCCc--CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC-cCHhHHHHHHHhhcCC----ceEEEe
Confidence 46677654311 234699999999986310 113489999999997 7999999988888888 899999
Q ss_pred cCccccCCCCCC---cccchhhHHHHhhcccccCCCCceeeccCceehhhhh
Q 001576 546 FPQRFDGIDRHD---RYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQAL 594 (1050)
Q Consensus 546 ~PQ~F~~id~~D---~y~n~~~vFfdi~~~glDg~qgp~yvGTGc~fRR~AL 594 (1050)
.+.++.|.+.+- .+..+...++.+.+.++...+...+.|+|++|||++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l 175 (191)
T cd06436 124 SRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSAL 175 (191)
T ss_pred eeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHH
Confidence 999998865431 1112233334455666655555557789999888887
No 39
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.35 E-value=4.2e-12 Score=129.39 Aligned_cols=62 Identities=16% Similarity=0.075 Sum_probs=47.0
Q ss_pred CCCccchhhHHHHhhc-cCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCccccCCC
Q 001576 487 HHKKAGAMNALVRVSA-VLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGID 554 (1050)
Q Consensus 487 hh~KAGalNallrvSa-v~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~F~~id 554 (1050)
+..|++|+|++++... .-+++++|+++|+|.. +.|++|++.+..|.+. ...||......+.+
T Consensus 61 ~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~-~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~ 123 (183)
T cd06438 61 RRGKGYALDFGFRHLLNLADDPDAVVVFDADNL-VDPNALEELNARFAAG-----ARVVQAYYNSKNPD 123 (183)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC-CChhHHHHHHHHHhhC-----CCeeEEEEeeeCCc
Confidence 4469999999988631 1247999999999998 6899999999988652 24688776665533
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.30 E-value=4.8e-11 Score=121.86 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=88.0
Q ss_pred CCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCccc
Q 001576 305 APVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEF 384 (1050)
Q Consensus 305 p~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~ 384 (1050)
|.|.|+|||+| |.+..+.+|+.|+++.+||. +.++|+|||...-+.+.+.+
T Consensus 1 p~vsiii~~~n---~~~~~l~~~l~sl~~q~~~~--~eiivvd~gs~d~~~~~~~~------------------------ 51 (202)
T cd04184 1 PLISIVMPVYN---TPEKYLREAIESVRAQTYPN--WELCIADDASTDPEVKRVLK------------------------ 51 (202)
T ss_pred CeEEEEEeccc---CcHHHHHHHHHHHHhCcCCC--eEEEEEeCCCCChHHHHHHH------------------------
Confidence 57999999998 77678899999999999984 68999999987621111111
Q ss_pred ccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcCCCCc
Q 001576 385 YFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGAL 464 (1050)
Q Consensus 385 yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~~ 464 (1050)
+ +..+
T Consensus 52 --------------------------~----------~~~~--------------------------------------- 56 (202)
T cd04184 52 --------------------------K----------YAAQ--------------------------------------- 56 (202)
T ss_pred --------------------------H----------HHhc---------------------------------------
Confidence 0 0000
Q ss_pred cccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhh-cCcCCCccEEE
Q 001576 465 DVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGKKLCY 543 (1050)
Q Consensus 465 d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~-~Dp~~g~~v~~ 543 (1050)
.|++.++..+. ...+|.|+|.+++. +.++||+.+|+|.+ +.|++|.+++-.| .+| +++.
T Consensus 57 ------~~~~~~~~~~~-----~~g~~~a~n~g~~~----a~~d~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~~~~ 116 (202)
T cd04184 57 ------DPRIKVVFREE-----NGGISAATNSALEL----ATGEFVALLDHDDE-LAPHALYEVVKALNEHP----DADL 116 (202)
T ss_pred ------CCCEEEEEccc-----CCCHHHHHHHHHHh----hcCCEEEEECCCCc-CChHHHHHHHHHHHhCC----CCCE
Confidence 02345554443 33579999999985 67899999999997 6999999999987 676 5667
Q ss_pred EecCcc
Q 001576 544 VQFPQR 549 (1050)
Q Consensus 544 VQ~PQ~ 549 (1050)
|+....
T Consensus 117 v~~~~~ 122 (202)
T cd04184 117 IYSDED 122 (202)
T ss_pred EEccHH
Confidence 755443
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.22 E-value=1.9e-10 Score=117.57 Aligned_cols=64 Identities=17% Similarity=0.151 Sum_probs=50.8
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhc-CcCCCccEEEEecCcccc
Q 001576 474 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLM-DPQLGKKLCYVQFPQRFD 551 (1050)
Q Consensus 474 lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~-Dp~~g~~v~~VQ~PQ~F~ 551 (1050)
+.|+.+++. ..+++|+|.+++. +.|+||+.+|+|.+ ..|++|.+++.+|. +| ++..|.......
T Consensus 57 i~~i~~~~n-----~G~~~a~N~g~~~----a~gd~i~~lD~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~ 121 (201)
T cd04195 57 LKVVPLEKN-----RGLGKALNEGLKH----CTYDWVARMDTDDI-SLPDRFEKQLDFIEKNP----EIDIVGGGVLEF 121 (201)
T ss_pred eEEEEcCcc-----ccHHHHHHHHHHh----cCCCEEEEeCCccc-cCcHHHHHHHHHHHhCC----CeEEEcccEEEE
Confidence 566766653 3579999999994 68999999999997 68999999999884 55 677887765543
No 42
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.15 E-value=1.6e-11 Score=101.20 Aligned_cols=48 Identities=42% Similarity=1.066 Sum_probs=30.6
Q ss_pred ccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCccccc
Q 001576 39 CRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYK 89 (1050)
Q Consensus 39 CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Yk 89 (1050)
|.+|.+++ +++|..|.|| ||+|.|||.||...++++++.||+||++||
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 77899997 8899999999 999999999999999889999999999996
No 43
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.11 E-value=3.8e-10 Score=116.80 Aligned_cols=60 Identities=17% Similarity=0.080 Sum_probs=51.7
Q ss_pred CCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCccccCCC
Q 001576 487 HHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGID 554 (1050)
Q Consensus 487 hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~F~~id 554 (1050)
-+.|..||-++++. ....++|+++|+|+. .+|++|++.+.-|.|| +++.|-.+.++.+.+
T Consensus 15 ~N~Kv~nL~~~~~~---~a~~d~~~~~DsDi~-v~p~~L~~lv~~l~~p----~vglVt~~~~~~~~~ 74 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA---GAKYDYLVISDSDIR-VPPDYLRELVAPLADP----GVGLVTGLPRGVPAR 74 (175)
T ss_pred CChHHHHHHHHHHh---hCCCCEEEEECCCee-ECHHHHHHHHHHHhCC----CCcEEEecccccCCc
Confidence 57999999999984 278999999999998 5899999999999998 899998877755443
No 44
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.09 E-value=1.5e-09 Score=109.30 Aligned_cols=54 Identities=19% Similarity=0.075 Sum_probs=41.9
Q ss_pred CccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhh-hhcCcCCCccEEEEecCcccc
Q 001576 489 KKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMC-FLMDPQLGKKLCYVQFPQRFD 551 (1050)
Q Consensus 489 ~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amc-f~~Dp~~g~~v~~VQ~PQ~F~ 551 (1050)
.+++|+|.+++. .+++||+.+|+|.. ..++.+.+.+. +..++ ++..|.....+.
T Consensus 62 g~~~a~n~~~~~----a~~~~v~~ld~D~~-~~~~~~~~~~~~~~~~~----~~~~v~g~~~~~ 116 (202)
T cd06433 62 GIYDAMNKGIAL----ATGDIIGFLNSDDT-LLPGALLAVVAAFAEHP----EVDVVYGDVLLV 116 (202)
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCcc-cCchHHHHHHHHHHhCC----CccEEEeeeEEE
Confidence 589999999994 68999999999997 57889999984 44565 566666555443
No 45
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.03 E-value=6.7e-09 Score=107.59 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=34.7
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCch
Q 001576 307 VDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASM 352 (1050)
Q Consensus 307 VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ 352 (1050)
|.|+||++| |+. .+..++.|+++..|+ ...++|.|||...
T Consensus 1 vsvii~~~n---~~~-~l~~~l~sl~~q~~~--~~evivvdd~s~d 40 (221)
T cd02522 1 LSIIIPTLN---EAE-NLPRLLASLRRLNPL--PLEIIVVDGGSTD 40 (221)
T ss_pred CEEEEEccC---cHH-HHHHHHHHHHhccCC--CcEEEEEeCCCCc
Confidence 579999998 765 779999999999984 5789999999876
No 46
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=98.99 E-value=9.7e-09 Score=103.20 Aligned_cols=42 Identities=14% Similarity=0.321 Sum_probs=36.6
Q ss_pred CCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCc
Q 001576 488 HKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDP 535 (1050)
Q Consensus 488 h~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp 535 (1050)
..+++|+|.+++. ++|+||+.+|+|-. +.+++|++.+-++ ++
T Consensus 65 ~~~~~~~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~~~~~~-~~ 106 (182)
T cd06420 65 FRKAKIRNKAIAA----AKGDYLIFIDGDCI-PHPDFIADHIELA-EP 106 (182)
T ss_pred hhHHHHHHHHHHH----hcCCEEEEEcCCcc-cCHHHHHHHHHHh-CC
Confidence 3689999999994 78999999999997 6899999999877 44
No 47
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=98.98 E-value=1.7e-08 Score=111.41 Aligned_cols=109 Identities=19% Similarity=0.117 Sum_probs=82.7
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCccccccc
Q 001576 309 VFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEFYFSQ 388 (1050)
Q Consensus 309 vfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~Pe~yFs~ 388 (1050)
|+|||+| |++..+..||.|+++..||.....|+|.|||+..-|.+.+.+.
T Consensus 2 IIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~--------------------------- 51 (299)
T cd02510 2 VIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEE--------------------------- 51 (299)
T ss_pred EEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHH---------------------------
Confidence 7999999 8889999999999999998666789999999987433222110
Q ss_pred ccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcCCCCccccC
Q 001576 389 KIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEG 468 (1050)
Q Consensus 389 k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~~d~~~ 468 (1050)
.. .
T Consensus 52 ---------------------------------~~-~------------------------------------------- 54 (299)
T cd02510 52 ---------------------------------YY-K------------------------------------------- 54 (299)
T ss_pred ---------------------------------HH-h-------------------------------------------
Confidence 00 0
Q ss_pred CCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcC
Q 001576 469 KELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMD 534 (1050)
Q Consensus 469 ~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~D 534 (1050)
...|++.++..++ ...++.|.|.+++. +.|+||+.||+|.. +.+++|.+.+-.+..
T Consensus 55 ~~~~~v~vi~~~~-----n~G~~~a~N~g~~~----A~gd~i~fLD~D~~-~~~~wL~~ll~~l~~ 110 (299)
T cd02510 55 KYLPKVKVLRLKK-----REGLIRARIAGARA----ATGDVLVFLDSHCE-VNVGWLEPLLARIAE 110 (299)
T ss_pred hcCCcEEEEEcCC-----CCCHHHHHHHHHHH----ccCCEEEEEeCCcc-cCccHHHHHHHHHHh
Confidence 0123466665554 23588999999995 78999999999998 589999999987754
No 48
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.97 E-value=7.2e-09 Score=106.19 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=49.0
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhh-cCcCCCccEEEEecCcccc
Q 001576 474 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGKKLCYVQFPQRFD 551 (1050)
Q Consensus 474 lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~-~Dp~~g~~v~~VQ~PQ~F~ 551 (1050)
+.++..++ .+.+++|+|.+++ .++++||+++|+|.+ ..|+.|.+.+-.+ .+| +.+++.....+.
T Consensus 56 ~~~~~~~~-----~~G~~~~~n~g~~----~~~g~~v~~ld~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~ 120 (214)
T cd04196 56 IILIRNGK-----NLGVARNFESLLQ----AADGDYVFFCDQDDI-WLPDKLERLLKAFLKDD----KPLLVYSDLELV 120 (214)
T ss_pred EEEEeCCC-----CccHHHHHHHHHH----hCCCCEEEEECCCcc-cChhHHHHHHHHHhcCC----CceEEecCcEEE
Confidence 44454444 3468999999988 478999999999997 5899999999984 555 677777776543
No 49
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.92 E-value=1.8e-08 Score=98.50 Aligned_cols=52 Identities=15% Similarity=0.057 Sum_probs=41.2
Q ss_pred CCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecC
Q 001576 488 HKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFP 547 (1050)
Q Consensus 488 h~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~P 547 (1050)
..+++|+|.+++. .++++|+.+|+|.+ +.++++.+.+-.+.+. ++++.|+..
T Consensus 60 ~g~~~a~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~---~~~~~~~~~ 111 (166)
T cd04186 60 LGFGAGNNQGIRE----AKGDYVLLLNPDTV-VEPGALLELLDAAEQD---PDVGIVGPK 111 (166)
T ss_pred cChHHHhhHHHhh----CCCCEEEEECCCcE-ECccHHHHHHHHHHhC---CCceEEEcc
Confidence 4689999999995 48999999999997 6899999998765432 266666655
No 50
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=98.89 E-value=2.6e-07 Score=110.05 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=45.8
Q ss_pred cccchHHHHHHHHhC--CcEEEEecCCCccccccCCCCHHHHHHHhHhhhchhHHHHH
Q 001576 747 SITEDILTGFKMHCR--GWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFL 802 (1050)
Q Consensus 747 sITED~~Tg~rLh~~--GWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~ 802 (1050)
.+.||=.++..|.++ |||..|+..+.+ +..+|++++.+++||+||..|++-.++
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~~~A~a--~T~aP~t~~vflsQRRRWinSTi~Nl~ 379 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYVPSAVA--YTDAPETFSVFLSQRRRWINSTIHNLF 379 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEcccccc--cccCCccHHHHHHHhhhccchhHhhHh
Confidence 578998888777776 899999965543 899999999999999999999986654
No 51
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.87 E-value=5.7e-08 Score=103.96 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=45.0
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEec
Q 001576 474 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQF 546 (1050)
Q Consensus 474 lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~ 546 (1050)
+.++.+++. ..|++|+|++++. +.|+||+.+|+|.. .+|++|.+.+-.+.++ +...|..
T Consensus 70 v~~~~~~~n-----~G~~~a~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g 128 (243)
T PLN02726 70 ILLRPRPGK-----LGLGTAYIHGLKH----ASGDFVVIMDADLS-HHPKYLPSFIKKQRET----GADIVTG 128 (243)
T ss_pred EEEEecCCC-----CCHHHHHHHHHHH----cCCCEEEEEcCCCC-CCHHHHHHHHHHHHhc----CCcEEEE
Confidence 555555442 2488999999984 68999999999997 6999999999887664 3445544
No 52
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.86 E-value=5.8e-08 Score=99.78 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=46.8
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCccc
Q 001576 474 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRF 550 (1050)
Q Consensus 474 lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~F 550 (1050)
+.|+.-++. +..+.++|.++...- ...++|++.+|+|.+ +.+++|++.+-.+.+| +++.| +|.++
T Consensus 53 i~~~~~~~n-----~g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~~-~~~~~ 117 (202)
T cd04185 53 IVYLRLPEN-----LGGAGGFYEGVRRAY-ELGYDWIWLMDDDAI-PDPDALEKLLAYADKD----NPQFL-APLVL 117 (202)
T ss_pred eEEEECccc-----cchhhHHHHHHHHHh-ccCCCEEEEeCCCCC-cChHHHHHHHHHHhcC----CceEe-cceeE
Confidence 455555442 346888898887532 457899999999997 6899999999988776 55555 34443
No 53
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.85 E-value=3.1e-08 Score=103.94 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=38.0
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHh
Q 001576 474 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAM 529 (1050)
Q Consensus 474 lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~am 529 (1050)
+.++..++.. .+|+|+|.+++.+.- .+++||+.+|+|.+ .+|++|.+..
T Consensus 49 i~~i~~~~n~-----G~~~a~N~g~~~a~~-~~~d~v~~lD~D~~-~~~~~l~~l~ 97 (237)
T cd02526 49 IELIHLGENL-----GIAKALNIGIKAALE-NGADYVLLFDQDSV-PPPDMVEKLL 97 (237)
T ss_pred EEEEECCCce-----ehHHhhhHHHHHHHh-CCCCEEEEECCCCC-cCHhHHHHHH
Confidence 6667665533 399999999995321 25699999999998 5899999985
No 54
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.85 E-value=4.4e-08 Score=102.42 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=35.2
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhh
Q 001576 309 VFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLL 354 (1050)
Q Consensus 309 vfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt 354 (1050)
|+|||+| ++ ..+..|+-|+++.+|| +...++|.|||+..-|
T Consensus 1 ViIp~yn---~~-~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t 41 (219)
T cd06913 1 IILPVHN---GE-QWLDECLESVLQQDFE-GTLELSVFNDASTDKS 41 (219)
T ss_pred CEEeecC---cH-HHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccH
Confidence 5799998 54 7999999999999999 4689999999988743
No 55
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.82 E-value=5.9e-09 Score=101.00 Aligned_cols=110 Identities=16% Similarity=0.108 Sum_probs=76.1
Q ss_pred cEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCccccC
Q 001576 473 RLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDG 552 (1050)
Q Consensus 473 ~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~F~~ 552 (1050)
++.|+.+++ +. .+++|+|.+++. ..++||+.+|+|.+ ..+++|.+.+.++.+. +..+.+...+....+
T Consensus 54 ~i~~i~~~~----n~-g~~~~~n~~~~~----a~~~~i~~ld~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~ 121 (169)
T PF00535_consen 54 NIRYIRNPE----NL-GFSAARNRGIKH----AKGEYILFLDDDDI-ISPDWLEELVEALEKN--PPDVVIGSVIYIDDD 121 (169)
T ss_dssp TEEEEEHCC----CS-HHHHHHHHHHHH------SSEEEEEETTEE-E-TTHHHHHHHHHHHC--TTEEEEEEEEEEECT
T ss_pred ccccccccc----cc-cccccccccccc----cceeEEEEeCCCce-EcHHHHHHHHHHHHhC--CCcEEEEEEEEecCC
Confidence 488999887 33 799999999995 78899999999998 5777999999999874 224444444444443
Q ss_pred CCCCCccc--chhhHHHHhhcccccCCCCceeeccCceehhhhh
Q 001576 553 IDRHDRYA--NRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQAL 594 (1050)
Q Consensus 553 id~~D~y~--n~~~vFfdi~~~glDg~qgp~yvGTGc~fRR~AL 594 (1050)
........ .....++............+.++|.++++||++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~ 165 (169)
T PF00535_consen 122 NRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVF 165 (169)
T ss_dssp TETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHH
T ss_pred ccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHH
Confidence 33222211 1223344444556677788999999999999998
No 56
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.76 E-value=1.1e-07 Score=98.79 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=46.0
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecC
Q 001576 474 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFP 547 (1050)
Q Consensus 474 lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~P 547 (1050)
+.++..+++ ..+++|+|.+++. +.++||+.+|+|.. .+|++|...+..+.++ +...|..+
T Consensus 55 i~~~~~~~n-----~G~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 114 (224)
T cd06442 55 VRLIVRPGK-----RGLGSAYIEGFKA----ARGDVIVVMDADLS-HPPEYIPELLEAQLEG----GADLVIGS 114 (224)
T ss_pred eEEEecCCC-----CChHHHHHHHHHH----cCCCEEEEEECCCC-CCHHHHHHHHHHHhcC----CCCEEEEe
Confidence 455555553 3589999999995 67899999999986 6899999999987765 34455544
No 57
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.71 E-value=8e-08 Score=92.80 Aligned_cols=108 Identities=26% Similarity=0.320 Sum_probs=64.5
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhh-hhcCcCCCccEEEEecCccccC
Q 001576 474 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMC-FLMDPQLGKKLCYVQFPQRFDG 552 (1050)
Q Consensus 474 lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amc-f~~Dp~~g~~v~~VQ~PQ~F~~ 552 (1050)
++++..++. ..|+.|+|.+++. .+++||+.+|+|.+ ..+++|.+.+. ++.++ +++.|...+...+
T Consensus 55 ~~~~~~~~~-----~g~~~~~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~v~~~~~~~~ 120 (180)
T cd06423 55 VLVVRDKEN-----GGKAGALNAGLRH----AKGDIVVVLDADTI-LEPDALKRLVVPFFADP----KVGAVQGRVRVRN 120 (180)
T ss_pred EEEEEeccc-----CCchHHHHHHHHh----cCCCEEEEECCCCC-cChHHHHHHHHHhccCC----CeeeEeeeEEEec
Confidence 455555543 3599999999995 58999999999997 58999999944 55565 5666655444433
Q ss_pred CCCC--Cc-ccchhhHHHHhhcccccCC-CCceeeccCceehhhhhc
Q 001576 553 IDRH--DR-YANRNIVFFDINMLGLDGI-QGPVYVGTGCVFNRQALY 595 (1050)
Q Consensus 553 id~~--D~-y~n~~~vFfdi~~~glDg~-qgp~yvGTGc~fRR~ALy 595 (1050)
...+ .. ........+.....+.... .-..+.|++.+|||++|.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 167 (180)
T cd06423 121 GSENLLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAFGAFRREALR 167 (180)
T ss_pred CcCcceeccchheecceeeeeeehhheecceeecCchHHHHHHHHHH
Confidence 3211 00 0001111111111111111 225567888999999985
No 58
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.52 E-value=1e-06 Score=91.66 Aligned_cols=52 Identities=17% Similarity=0.076 Sum_probs=41.4
Q ss_pred CccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCcc
Q 001576 489 KKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQR 549 (1050)
Q Consensus 489 ~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~ 549 (1050)
.|++|+|.+++. +.++||+.+|+|-. ..++++.+.+..+.++ ....|..+..
T Consensus 69 G~~~a~~~g~~~----a~gd~i~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~r~ 120 (211)
T cd04188 69 GKGGAVRAGMLA----ARGDYILFADADLA-TPFEELEKLEEALKTS----GYDIAIGSRA 120 (211)
T ss_pred CcHHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEee
Confidence 489999999995 67899999999997 6899999999987654 3344554433
No 59
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.51 E-value=6.4e-07 Score=90.14 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=49.9
Q ss_pred EEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCccccC
Q 001576 474 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDG 552 (1050)
Q Consensus 474 lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~F~~ 552 (1050)
+.++-.+++. .|++|+|.+++. +.++||+.+|+|-. ..|++|.+.+-.+..+ +..+|+.+..+.+
T Consensus 56 ~~~~~~~~n~-----G~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~~~~~~ 120 (185)
T cd04179 56 VRVIRLSRNF-----GKGAAVRAGFKA----ARGDIVVTMDADLQ-HPPEDIPKLLEKLLEG----GADVVIGSRFVRG 120 (185)
T ss_pred eEEEEccCCC-----CccHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEeecCC
Confidence 4555555543 399999999984 67899999999987 5899999999986654 4667777765544
No 60
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.42 E-value=3.3e-06 Score=95.60 Aligned_cols=110 Identities=11% Similarity=0.173 Sum_probs=82.6
Q ss_pred CCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccCCCCCc
Q 001576 303 RLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAP 382 (1050)
Q Consensus 303 ~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~iepR~P 382 (1050)
..|.|.|+||+|| ++ ..+..++-|+++..|+ .+.++|.|||+.+-|.+-+.+
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t~~i~~~---------------------- 55 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDNSVEIAKH---------------------- 55 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCccHHHHHHH----------------------
Confidence 3578999999998 55 6889999999999997 478999999998732211111
Q ss_pred ccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCCCChhhHHhhhcCCC
Q 001576 383 EFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEG 462 (1050)
Q Consensus 383 e~yFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g 462 (1050)
|.+
T Consensus 56 -----------------------------~~~------------------------------------------------ 58 (328)
T PRK10073 56 -----------------------------YAE------------------------------------------------ 58 (328)
T ss_pred -----------------------------HHh------------------------------------------------
Confidence 100
Q ss_pred CccccCCCCCcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCc
Q 001576 463 ALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDP 535 (1050)
Q Consensus 463 ~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp 535 (1050)
..|++.++..+ ....++|.|.++.. ..|+||+.+|+|-+ ..|+.+.+.+..+.++
T Consensus 59 -------~~~~i~vi~~~------n~G~~~arN~gl~~----a~g~yi~flD~DD~-~~p~~l~~l~~~~~~~ 113 (328)
T PRK10073 59 -------NYPHVRLLHQA------NAGVSVARNTGLAV----ATGKYVAFPDADDV-VYPTMYETLMTMALED 113 (328)
T ss_pred -------hCCCEEEEECC------CCChHHHHHHHHHh----CCCCEEEEECCCCc-cChhHHHHHHHHHHhC
Confidence 01345666432 23689999999994 79999999999998 4899999999877543
No 61
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.42 E-value=5.1e-06 Score=92.37 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=42.0
Q ss_pred CcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhc
Q 001576 472 PRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLM 533 (1050)
Q Consensus 472 P~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~ 533 (1050)
|++.|+..++. ..+|.|+|.++.. ++|+||+.+|+|.+ ..|+.|.+.+-++.
T Consensus 60 ~ri~~i~~~~n-----~G~~~a~N~gi~~----a~g~~I~~lDaDD~-~~p~~l~~~~~~~~ 111 (279)
T PRK10018 60 PRITYIHNDIN-----SGACAVRNQAIML----AQGEYITGIDDDDE-WTPNRLSVFLAHKQ 111 (279)
T ss_pred CCEEEEECCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCCC-CCccHHHHHHHHHH
Confidence 35788876553 3588999999984 79999999999998 47899998888764
No 62
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=98.40 E-value=4.8e-06 Score=91.02 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=49.1
Q ss_pred cEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCccc
Q 001576 473 RLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRF 550 (1050)
Q Consensus 473 ~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~F 550 (1050)
++.|+..++. ...|||+|.+++.. .-.+++||+.+|.|-+ +.+++|.+.+..+..+ +.+++.|. |..+
T Consensus 46 ~i~~i~~~~N-----~G~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~-~~~~ 113 (281)
T TIGR01556 46 KIALIHLGDN-----QGIAGAQNQGLDAS-FRRGVQGVLLLDQDSR-PGNAFLAAQWKLLSAE--NGQACALG-PRFF 113 (281)
T ss_pred CeEEEECCCC-----cchHHHHHHHHHHH-HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHhc--CCceEEEC-CeEE
Confidence 4667765543 25899999998853 1237899999999998 5799999999887542 23678776 4443
No 63
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.28 E-value=1.3e-05 Score=87.32 Aligned_cols=45 Identities=16% Similarity=0.041 Sum_probs=35.6
Q ss_pred CCeeEEEecCCCCCCCHHHHHHHHHHHHcC-CCCCCCcEEEEcCCCCchh
Q 001576 305 APVDVFVSTVDPLKEPPIITANTVLSILSM-DYPVDKVSCYVSDDGASML 353 (1050)
Q Consensus 305 p~VDvfV~T~dp~kEpp~v~~nTvls~la~-dYP~~kl~~yvsDDG~~~l 353 (1050)
|.|.|+||||| |+ ..+..|+.|++++ ..+...+.++|.|||+.+-
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~ 46 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDG 46 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCccc
Confidence 56899999998 64 5789999999864 2333468999999999874
No 64
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.27 E-value=7.9e-06 Score=82.75 Aligned_cols=104 Identities=15% Similarity=0.245 Sum_probs=63.9
Q ss_pred cEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCccccC
Q 001576 473 RLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDG 552 (1050)
Q Consensus 473 ~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~F~~ 552 (1050)
++.++..++ ...|++|+|++++. +.++||+.+|+|.. ..+++|.+.+.. +++ +.++.+...... +
T Consensus 56 ~i~~i~~~~-----n~G~~~a~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~-~~~--~~~~v~g~~~~~--~ 120 (181)
T cd04187 56 RVKVIRLSR-----NFGQQAALLAGLDH----ARGDAVITMDADLQ-DPPELIPEMLAK-WEE--GYDVVYGVRKNR--K 120 (181)
T ss_pred CEEEEEecC-----CCCcHHHHHHHHHh----cCCCEEEEEeCCCC-CCHHHHHHHHHH-HhC--CCcEEEEEecCC--c
Confidence 356665554 23599999999995 67899999999997 689999999987 443 234544433222 1
Q ss_pred CCC-CCcccchhhHHHHhhcccccCCCCceeeccCceehhhhhc
Q 001576 553 IDR-HDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALY 595 (1050)
Q Consensus 553 id~-~D~y~n~~~vFfdi~~~glDg~qgp~yvGTGc~fRR~ALy 595 (1050)
+. ..++.+ ..++. ....+.+..-+...|+..+|||+++-
T Consensus 121 -~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 121 -ESWLKRLTS--KLFYR-LINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred -chHHHHHHH--HHHHH-HHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 11 011111 11111 12223444555666777899999985
No 65
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.16 E-value=2.8e-05 Score=73.34 Aligned_cols=52 Identities=27% Similarity=0.298 Sum_probs=41.3
Q ss_pred CCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhh-hhcCcCCCccEEEEecC
Q 001576 487 HHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMC-FLMDPQLGKKLCYVQFP 547 (1050)
Q Consensus 487 hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amc-f~~Dp~~g~~v~~VQ~P 547 (1050)
+..|++++|.++.. .++++++++|+|.+ ..++++.+.+- +..++ +...|+.+
T Consensus 62 ~~g~~~~~~~~~~~----~~~d~v~~~d~D~~-~~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 62 NQGLAAARNAGLKA----ARGEYILFLDADDL-LLPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred CCChHHHHHHHHHH----hcCCEEEEECCCCc-cCccHHHHHHHHHhcCC----CceEEecc
Confidence 45799999999985 47999999999997 58888888744 44554 67778777
No 66
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.16 E-value=4e-05 Score=95.04 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=44.2
Q ss_pred cccchHHHHHHHHhCCcEEEEecCCCccccccCCCCHHHHHHHhHhhhch
Q 001576 747 SITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLRWALG 796 (1050)
Q Consensus 747 sITED~~Tg~rLh~~GWrsvY~~p~~~af~G~aP~tl~~~l~QR~RWA~G 796 (1050)
+..||=.+..++..+||++-|+.... | ..++|+++.+++.||+||..|
T Consensus 549 ~~geDR~L~~~llskgy~l~Y~a~s~-a-~t~~Pe~~~efl~QrrRW~~s 596 (862)
T KOG2571|consen 549 SLGEDRWLCTLLLSKGYRLKYVAASD-A-ETEAPESFLEFLNQRRRWLNS 596 (862)
T ss_pred ccchhHHHHHHHHhccceeeeecccc-c-cccCcHhHHHHHHHhhhhccc
Confidence 48899999999999999999996544 3 899999999999999999999
No 67
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.12 E-value=5.1e-05 Score=86.36 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=35.3
Q ss_pred CccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcC
Q 001576 489 KKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMD 534 (1050)
Q Consensus 489 ~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~D 534 (1050)
.|++|+|++++. +.|+||+++|+|.. .+++.+.+.+-.+.+
T Consensus 149 G~~~A~~~Gi~~----a~gd~I~~~DaD~~-~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 149 GKGGAVRIGMLA----SRGKYILMVDADGA-TDIDDFDKLEDIMLK 189 (333)
T ss_pred ChHHHHHHHHHH----ccCCEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 699999999995 68999999999997 688898888877653
No 68
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.06 E-value=7.8e-05 Score=82.51 Aligned_cols=61 Identities=11% Similarity=0.217 Sum_probs=44.8
Q ss_pred CCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCccccCCC
Q 001576 488 HKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGID 554 (1050)
Q Consensus 488 h~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~F~~id 554 (1050)
-.+|.|.|.++.. +++++|+.+|+|.+ +.|+++.+++-+...=. ...-+++-.|-.|.+.+
T Consensus 74 f~~a~arN~g~~~----A~~d~l~flD~D~i-~~~~~i~~~~~~~~~l~-~~~~~~~~~p~~yl~~~ 134 (281)
T PF10111_consen 74 FSRAKARNIGAKY----ARGDYLIFLDADCI-PSPDFIEKLLNHVKKLD-KNPNAFLVYPCLYLSEE 134 (281)
T ss_pred cCHHHHHHHHHHH----cCCCEEEEEcCCee-eCHHHHHHHHHHHHHHh-cCCCceEEEeeeeccch
Confidence 4789999999994 79999999999997 68999999999322110 11345666676666544
No 69
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=97.92 E-value=4.7e-05 Score=85.78 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=42.4
Q ss_pred CCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhc-CcCCCccEEEEec
Q 001576 488 HKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLM-DPQLGKKLCYVQF 546 (1050)
Q Consensus 488 h~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~-Dp~~g~~v~~VQ~ 546 (1050)
..|++|+|.+++. ++|++|+.+|+|....+|++|.+.+..+. || ++.+|..
T Consensus 101 ~Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~----~~~~V~g 152 (306)
T PRK13915 101 PGKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTDP----GVHLVKA 152 (306)
T ss_pred CCHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhCC----CceEEEE
Confidence 4699999999884 78999999999985358999999998775 77 5677764
No 70
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=97.91 E-value=0.00026 Score=79.17 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=49.6
Q ss_pred CcEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCC-EEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEecCccc
Q 001576 472 PRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAP-FILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQFPQRF 550 (1050)
Q Consensus 472 P~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp-~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ~PQ~F 550 (1050)
|.+.|+.-.+.-| =||+.|.+++.. +.++. |++.|+-|.+ .++++|.+.+-.+... ...+.|+.-.+.
T Consensus 56 ~~v~~i~~~~NlG-----~agg~n~g~~~a--~~~~~~~~l~LN~D~~-~~~~~l~~ll~~~~~~---~~~~~~~~~i~~ 124 (305)
T COG1216 56 PNVRLIENGENLG-----FAGGFNRGIKYA--LAKGDDYVLLLNPDTV-VEPDLLEELLKAAEED---PAAGVVGPLIRN 124 (305)
T ss_pred CcEEEEEcCCCcc-----chhhhhHHHHHH--hcCCCcEEEEEcCCee-eChhHHHHHHHHHHhC---CCCeEeeeeEec
Confidence 3466666555444 488888877752 34543 9999999965 7999999999877432 278888877765
Q ss_pred cC
Q 001576 551 DG 552 (1050)
Q Consensus 551 ~~ 552 (1050)
++
T Consensus 125 ~~ 126 (305)
T COG1216 125 YD 126 (305)
T ss_pred CC
Confidence 44
No 71
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.21 E-value=0.0021 Score=73.07 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=35.7
Q ss_pred CCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhc
Q 001576 488 HKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLM 533 (1050)
Q Consensus 488 h~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~ 533 (1050)
..|++|+|++++. +.|++++.+|||.. .+|+.+.+.+-.+.
T Consensus 76 ~G~~~A~~~G~~~----A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 76 YGQHSAIMAGFSH----VTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred CCHHHHHHHHHHh----CCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 3688999999985 68999999999997 78999999888764
No 72
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=96.98 E-value=0.014 Score=66.98 Aligned_cols=166 Identities=27% Similarity=0.419 Sum_probs=113.3
Q ss_pred EEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEE-ecCccccCC
Q 001576 475 VYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYV-QFPQRFDGI 553 (1050)
Q Consensus 475 vYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~V-Q~PQ~F~~i 553 (1050)
+++.-||- .-+-|--||=-+.|. ..-|||++.|.|-. -.|+.+....-=||.|+ |+|+| |+|-.++-.
T Consensus 146 lf~gG~~v---g~npKInN~mpgy~~----a~ydlvlisDsgI~-m~pdtildm~t~M~she---kmalvtq~py~~dr~ 214 (431)
T KOG2547|consen 146 LFFGGEKV---GLNPKINNMMPGYRA----AKYDLVLISDSGIF-MKPDTILDMATTMMSHE---KMALVTQTPYCKDRQ 214 (431)
T ss_pred EEEccccc---ccChhhhccCHHHHH----hcCCEEEEecCCee-ecCchHHHHHHhhhccc---ceeeecCCceeeccc
Confidence 44444442 345677777777774 67789999999987 58999999888898875 99998 888776532
Q ss_pred CCCCcccchhhHHHHhhcccccCCCCceeeccCceehhhhhcCCCCCCCCCCCCCCCCCCCCCCcccCCCCccccccccC
Q 001576 554 DRHDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKG 633 (1050)
Q Consensus 554 d~~D~y~n~~~vFfdi~~~glDg~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 633 (1050)
- ||.-+ .-+|-||- +-|--|-| +|-. .
T Consensus 215 G------------f~atl-------e~~~fgTs--h~r~yl~~--------------n~~~----~-------------- 241 (431)
T KOG2547|consen 215 G------------FDATL-------EQVYFGTS--HPRIYLSG--------------NVLG----F-------------- 241 (431)
T ss_pred c------------chhhh-------hheeeccC--CceEEEcc--------------cccc----c--------------
Confidence 1 11111 11444543 12222211 0000 0
Q ss_pred CCCcccccchhhhhhccccccccCCCCCccchhHhhhhccchhhhhhhhhhhhhhhhhhc-CCchHHHhhhhhhcCCCCC
Q 001576 634 DKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRF-GQSPVFIASTLKEDGGLPE 712 (1050)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-G~s~~f~~sal~e~GG~~~ 712 (1050)
+.+ |-|+..|++++.|.||+..
T Consensus 242 ---------------------------------------------------------~c~tgms~~mrK~~ld~~ggi~~ 264 (431)
T KOG2547|consen 242 ---------------------------------------------------------NCSTGMSSMMRKEALDECGGISA 264 (431)
T ss_pred ---------------------------------------------------------cccccHHHHHHHHHHHHhccHHH
Confidence 112 6677889999999999754
Q ss_pred CCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecCCCccccccCCCCHHHHHHHhHh
Q 001576 713 GTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKRPAFKGSAPINLSDRLHQVLR 792 (1050)
Q Consensus 713 ~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p~~~af~G~aP~tl~~~l~QR~R 792 (1050)
. | +.+.||+..+-.+..+||++.+..-. +-...+-.++..+..|-.|
T Consensus 265 f----------------------------~---~yLaedyFaaksllSRG~ksaist~p--alQnSas~~mssf~~Ri~r 311 (431)
T KOG2547|consen 265 F----------------------------G---GYLAEDYFAAKSLLSRGWKSAISTHP--ALQNSASVTMSSFLDRIIR 311 (431)
T ss_pred H----------------------------H---HHHHHHHHHHHHHHhhhhhhhhcccc--hhhhhhhhHHHHHHHHHHH
Confidence 2 1 38999999999999999999998632 2256777889999999999
Q ss_pred hh
Q 001576 793 WA 794 (1050)
Q Consensus 793 WA 794 (1050)
|.
T Consensus 312 wv 313 (431)
T KOG2547|consen 312 WV 313 (431)
T ss_pred hh
Confidence 97
No 73
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.85 E-value=0.007 Score=57.86 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=38.9
Q ss_pred CCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCch
Q 001576 304 LAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASM 352 (1050)
Q Consensus 304 lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ 352 (1050)
.|.+.|+|||+| |+ ..+..+|.|++...|+. ..+.|.|||+.+
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d 44 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTD 44 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCC
Confidence 478999999998 65 89999999999999997 559999999998
No 74
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.69 E-value=0.00069 Score=75.67 Aligned_cols=48 Identities=29% Similarity=0.944 Sum_probs=43.6
Q ss_pred cccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCcccc
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRY 88 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Y 88 (1050)
.|..|=+.+..+ ..-|.+| -|||.|||.||.--|.+=|+.||.|+..|
T Consensus 16 ~cplcie~mdit--dknf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDIT--DKNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cCcccccccccc--cCCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 599999997665 4569999 99999999999999999999999999999
No 75
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.44 E-value=0.019 Score=61.36 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=35.8
Q ss_pred CccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcCc
Q 001576 489 KKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDP 535 (1050)
Q Consensus 489 ~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp 535 (1050)
..+.+.|.++.. ..+++|+.+|+|.. ..++.+.+...++.++
T Consensus 58 g~~~~~n~~~~~----a~~d~vl~lDaD~~-~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 58 GFGAQRNFALEL----ATNDWVLSLDADER-LTPELADEILALLATD 99 (229)
T ss_pred ChHHHHHHHHHh----CCCCEEEEEeCCcC-cCHHHHHHHHHHHhCC
Confidence 578899999884 67899999999997 5899999999888654
No 76
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.53 E-value=0.0089 Score=51.24 Aligned_cols=46 Identities=37% Similarity=0.879 Sum_probs=37.7
Q ss_pred CCCcccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCC--Ccccc
Q 001576 35 GSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPG--CNTRY 88 (1050)
Q Consensus 35 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPq--Ckt~Y 88 (1050)
.+..|.+||+++- +|++.|.|.+|+=|-=|+||+++ +.|-- |++++
T Consensus 4 ~~~~C~~Cg~~~~---~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKFK---DGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCccc---CCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 3568999999974 37899999999999999999876 45655 77665
No 77
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.30 E-value=0.018 Score=65.15 Aligned_cols=59 Identities=24% Similarity=0.528 Sum_probs=51.0
Q ss_pred CCCcccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCccccccccCcc
Q 001576 35 GSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRHKGCA 95 (1050)
Q Consensus 35 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~kgsp 95 (1050)
..+.|.+|-.+.-++.+=.+++. +|+-..|+.|.+---+.|.+.||+|+++.+..+=.|
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence 45799999999999888888887 999999999998877789999999999998764333
No 78
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=94.35 E-value=0.45 Score=54.96 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=34.4
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCch
Q 001576 308 DVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASM 352 (1050)
Q Consensus 308 DvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ 352 (1050)
-|+|.||| - |.-+..|+-|+++..+-.+...+||++||+..
T Consensus 3 PVlv~ayN---R-p~~l~r~LesLl~~~p~~~~~~liIs~DG~~~ 43 (334)
T cd02514 3 PVLVIACN---R-PDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE 43 (334)
T ss_pred CEEEEecC---C-HHHHHHHHHHHHhccccCCCceEEEEeCCCch
Confidence 47788886 4 69999999999998755567889999999876
No 79
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=90.77 E-value=2.5 Score=53.69 Aligned_cols=103 Identities=22% Similarity=0.314 Sum_probs=69.2
Q ss_pred hhhhhcCCchHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEE
Q 001576 688 NFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVY 767 (1050)
Q Consensus 688 ~~~~~fG~s~~f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY 767 (1050)
.-+-+||.-.+|-+--.+.-||++.+ .. .=.++||+..|+....||-++.+
T Consensus 379 ~~rlHYGHPD~~n~~f~~TRGGvSKA----------sk-------------------~lhLsEDIfaG~n~~lRGG~i~h 429 (817)
T PF02364_consen 379 LVRLHYGHPDVFNRIFMTTRGGVSKA----------SK-------------------GLHLSEDIFAGMNATLRGGRIKH 429 (817)
T ss_pred hhhccCCCchhhhhhheeccCccchH----------hh-------------------cccccHHHHHHHHHHhcCCceee
Confidence 34567898888877767888998752 11 02799999999999999999999
Q ss_pred ecCCCccccccCCC-CHHHHHHHhHhhhchhHHHHHhhccccccccCCCCCcccchhhh
Q 001576 768 CVPKRPAFKGSAPI-NLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYT 825 (1050)
Q Consensus 768 ~~p~~~af~G~aP~-tl~~~l~QR~RWA~G~lQil~~k~~Pl~~g~~~~Ls~~QRL~Yl 825 (1050)
+ +-..+ |..-+ .+..-+.=-..-+.|+=+..++|.--.+ ..+|.+.+-+++.
T Consensus 430 ~-ey~qc--GKGRD~Gf~~I~~F~~KI~~G~GEQ~LSRe~yrL---g~~ld~~R~LSfy 482 (817)
T PF02364_consen 430 C-EYIQC--GKGRDVGFNSILNFETKIASGMGEQMLSREYYRL---GTRLDFFRFLSFY 482 (817)
T ss_pred h-hhhhc--ccccccCchhhhhhHhHhcCCccchhhhHHHHHh---hccCCHHHHHHHH
Confidence 8 44442 43322 2333333345678898888888742222 5677777666443
No 80
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.33 E-value=0.23 Score=49.93 Aligned_cols=51 Identities=29% Similarity=0.776 Sum_probs=39.4
Q ss_pred CcccccCCcccccCCCCeeecccCC-CCccchhhhhhhhh--cCCCCCCCCccccccc
Q 001576 37 KLCRVCGDEIGLKENGELFVACHEC-GFPVCRPCYEYERS--EGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 37 ~~CqiCgd~vg~~~~G~~fvaC~eC-~FpVCR~Cyeyerk--eG~~~CPqCkt~Ykr~ 91 (1050)
--|.||.|. ..-|-|.-=+|| ||.||-.||--=.| .-.-+||-|||-||..
T Consensus 81 YeCnIC~et----S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 81 YECNICKET----SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred eeccCcccc----cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 369999875 234557776675 99999999965555 5568999999999965
No 81
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=87.86 E-value=0.48 Score=36.83 Aligned_cols=44 Identities=34% Similarity=0.745 Sum_probs=32.7
Q ss_pred cccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCccc
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTR 87 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~ 87 (1050)
.|.||.+.. .+.+. ...|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~~-~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPVV-LLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCceE-ecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998886 22222 224899999999976666678899999975
No 82
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=82.27 E-value=1.3 Score=37.95 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=33.7
Q ss_pred cccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCccccc
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYK 89 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Yk 89 (1050)
+|.||++-+ .+ +.+ -.||+-.||.|.+--.++ ++.||.|+.++.
T Consensus 3 ~Cpi~~~~~-~~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVM-KD----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcC-CC----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC
Confidence 699999863 33 333 268999999999776666 678999998874
No 83
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=79.53 E-value=11 Score=40.63 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=36.1
Q ss_pred cEEEEeccCCCCCCCCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhhcC
Q 001576 473 RLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMD 534 (1050)
Q Consensus 473 ~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~~D 534 (1050)
++.-..|.+.-|..- |.-+.+. ...|+|+++.|||-- -.|+++-+.+-...|
T Consensus 64 ~i~l~pR~~klGLgt-----Ay~hgl~----~a~g~fiviMDaDls-HhPk~ipe~i~lq~~ 115 (238)
T KOG2978|consen 64 NILLKPRTKKLGLGT-----AYIHGLK----HATGDFIVIMDADLS-HHPKFIPEFIRLQKE 115 (238)
T ss_pred cEEEEeccCcccchH-----HHHhhhh----hccCCeEEEEeCccC-CCchhHHHHHHHhhc
Confidence 577778877544222 2223444 378999999999985 789999887765544
No 84
>PHA02929 N1R/p28-like protein; Provisional
Probab=75.47 E-value=3 Score=46.15 Aligned_cols=56 Identities=25% Similarity=0.548 Sum_probs=40.1
Q ss_pred CCCCCcccccCCcccccCC-CCeeecccCCCCccchhhhhhhhhcCCCCCCCCccccc
Q 001576 33 QSGSKLCRVCGDEIGLKEN-GELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYK 89 (1050)
Q Consensus 33 ~~~~~~CqiCgd~vg~~~~-G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Yk 89 (1050)
......|.||.+.+..++- ...+..-..|+=.-|+.|..- -.+.++.||-|++++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~-Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDI-WKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHH-HHhcCCCCCCCCCEee
Confidence 3456799999998765431 122333347899999999954 4456789999999875
No 85
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=73.56 E-value=1.7 Score=49.24 Aligned_cols=44 Identities=36% Similarity=0.881 Sum_probs=37.0
Q ss_pred cCCCCeeecccCCCCcc--------ch--hhhhhhhhcCCCCCCCCcccccccc
Q 001576 49 KENGELFVACHECGFPV--------CR--PCYEYERSEGSQCCPGCNTRYKRHK 92 (1050)
Q Consensus 49 ~~~G~~fvaC~eC~FpV--------CR--~CyeyerkeG~~~CPqCkt~Ykr~k 92 (1050)
..+|+..--|.-|+||| |+ .|||.+|.+-.+.||.|-.+-.|.+
T Consensus 84 k~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 84 KQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIE 137 (389)
T ss_pred cccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHH
Confidence 34566677799999998 54 6999999999999999999998874
No 86
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=73.02 E-value=2.9 Score=48.00 Aligned_cols=52 Identities=33% Similarity=0.902 Sum_probs=43.4
Q ss_pred CCcccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCccccccc
Q 001576 36 SKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 36 ~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 91 (1050)
...|.+|++.. +.+-..|+|| -|+|-+|-+|.-- .-++++.||.|.++|.+.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~~t-~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCHKT-ISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhhhc-ccccCCCCCccCCccccC
Confidence 36899999985 4555679999 9999999999944 468999999999999764
No 87
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=71.10 E-value=3.9 Score=43.95 Aligned_cols=63 Identities=22% Similarity=0.539 Sum_probs=41.0
Q ss_pred EeccCCCC-CCCCCCCCCcccccCCcccccCCCCeeecccCCCCccchhhhhhhh---------------hcCCCCCCCC
Q 001576 21 VMHANEER-PPTRQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYER---------------SEGSQCCPGC 84 (1050)
Q Consensus 21 ~~~~~~~~-~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyeyer---------------keG~~~CPqC 84 (1050)
.|+.|+|. +-+...+.-.|.||-|.+- ++.+ -.|+--.|++|.+.-. +.+...||-|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvC 74 (193)
T PLN03208 2 EIEKDEDDTTLVDSGGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVC 74 (193)
T ss_pred CcccccccceeccCCCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCC
Confidence 35555553 3334445569999999752 2333 2689999999996321 1134689999
Q ss_pred cccccc
Q 001576 85 NTRYKR 90 (1050)
Q Consensus 85 kt~Ykr 90 (1050)
+++...
T Consensus 75 R~~Is~ 80 (193)
T PLN03208 75 KSDVSE 80 (193)
T ss_pred CCcCCh
Confidence 999864
No 88
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=70.89 E-value=2.2 Score=37.11 Aligned_cols=47 Identities=30% Similarity=0.692 Sum_probs=34.3
Q ss_pred CCCcccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCccccccc
Q 001576 35 GSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 35 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 91 (1050)
..|.|=.||..-.. ..+.+ |+=-||+-|+.-||-.| ||=|++|+...
T Consensus 6 ~~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 34566667765222 13444 59999999999999887 99999999654
No 89
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=70.54 E-value=2.4 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.642 Sum_probs=17.5
Q ss_pred chhhhhhhhhcCCCCCCCCccccc
Q 001576 66 CRPCYEYERSEGSQCCPGCNTRYK 89 (1050)
Q Consensus 66 CR~CyeyerkeG~~~CPqCkt~Yk 89 (1050)
|.-|- .+...|..-||+|+++-.
T Consensus 30 Cp~CG-~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 30 CPQCG-TEVPVDEAHCPNCGAETG 52 (645)
T ss_pred CCCCC-CCCCcccccccccCCccc
Confidence 55554 446788899999999875
No 90
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=68.45 E-value=3.3 Score=33.45 Aligned_cols=43 Identities=30% Similarity=0.639 Sum_probs=32.4
Q ss_pred cccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCc
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCN 85 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCk 85 (1050)
.|.||-+++.. ++..+.. .|+=-.|+.|.+--.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l-~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKL-PCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEE-TTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEc-cCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999755 6677777 49999999999544333 57999995
No 91
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=66.35 E-value=3.6 Score=34.18 Aligned_cols=26 Identities=38% Similarity=0.976 Sum_probs=20.8
Q ss_pred cccccCCcccccCCCCeeecccCCCCcc
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGFPV 65 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~FpV 65 (1050)
+|.-||.++..+.. .-+-|.+|++.|
T Consensus 4 ~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 4 ICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred ECCCCCCEeecCCC--CceECCCCCceE
Confidence 79999999888743 348899999876
No 92
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=65.63 E-value=4.8 Score=41.96 Aligned_cols=51 Identities=27% Similarity=0.535 Sum_probs=34.7
Q ss_pred CCCcccccCCcccccCCCCeeecccCCCC---ccchhhhhhh-hhcCCCCCCCCccccccc
Q 001576 35 GSKLCRVCGDEIGLKENGELFVACHECGF---PVCRPCYEYE-RSEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 35 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~F---pVCR~Cyeye-rkeG~~~CPqCkt~Ykr~ 91 (1050)
.+..|.||-++ +++..-|| .|.= -|=+.|.+.= ...++..|++|+++|.-.
T Consensus 7 ~~~~CRIC~~~-----~~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDE-----YDVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCC-----CCCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 45699999766 22345688 6632 3456787544 345789999999999744
No 93
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=65.58 E-value=87 Score=36.03 Aligned_cols=41 Identities=20% Similarity=0.139 Sum_probs=30.3
Q ss_pred CccchhhHHHHhhccCCCCCEEEEecCCCC--CChHHHHHHHhhhhc
Q 001576 489 KKAGAMNALVRVSAVLTNAPFILNLDCDHY--LNNSKAVREAMCFLM 533 (1050)
Q Consensus 489 ~KAGalNallrvSav~tngp~il~lDcD~~--~~~~~~Lr~amcf~~ 533 (1050)
.|-||..-.+- .+-|.+|+..|||-- +++-+.|.++|.=..
T Consensus 144 gKGgAvR~g~l----~~rG~~ilfadAdGaTkf~d~ekLe~al~~~~ 186 (323)
T KOG2977|consen 144 GKGGAVRKGML----SSRGQKILFADADGATKFADLEKLEKALNDKA 186 (323)
T ss_pred CCCcceehhhH----hccCceEEEEcCCCCccCCCHHHHHHHHHhhc
Confidence 47777765443 368999999999973 477788888886443
No 94
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=65.21 E-value=4.7 Score=31.42 Aligned_cols=26 Identities=42% Similarity=1.076 Sum_probs=18.7
Q ss_pred cccccCCcccccCCCCeeecccCCCCcc
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGFPV 65 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~FpV 65 (1050)
+|.-||.++.+.. ++ -+-|.+|++.|
T Consensus 2 ~C~~Cg~~~~~~~-~~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKP-GD-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BST-SS-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCC-CC-cEECCcCCCeE
Confidence 6889999998664 33 37999999876
No 95
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=65.15 E-value=1.5 Score=43.15 Aligned_cols=48 Identities=31% Similarity=0.773 Sum_probs=35.1
Q ss_pred CCCCcccccCCcccccC-CCCeeecccCCCCccchhhhhhhhhcCCCCCCCC
Q 001576 34 SGSKLCRVCGDEIGLKE-NGELFVACHECGFPVCRPCYEYERSEGSQCCPGC 84 (1050)
Q Consensus 34 ~~~~~CqiCgd~vg~~~-~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqC 84 (1050)
.+...|..|+...|+-. .| ..|..|...||+.|-.|-.+++.=.|-=|
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred cCCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 36679999999987763 35 89999999999999988555555556544
No 96
>PHA02862 5L protein; Provisional
Probab=64.50 E-value=4.1 Score=41.83 Aligned_cols=49 Identities=27% Similarity=0.492 Sum_probs=32.6
Q ss_pred CCcccccCCcccccCCCCeeecccCC---CCccchhhhhhh-hhcCCCCCCCCcccccc
Q 001576 36 SKLCRVCGDEIGLKENGELFVACHEC---GFPVCRPCYEYE-RSEGSQCCPGCNTRYKR 90 (1050)
Q Consensus 36 ~~~CqiCgd~vg~~~~G~~fvaC~eC---~FpVCR~Cyeye-rkeG~~~CPqCkt~Ykr 90 (1050)
+.+|.||-++ ++|..-|| .| -==|=+.|.+-= ...++..|++||++|.-
T Consensus 2 ~diCWIC~~~-----~~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDV-----CDERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCc-----CCCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4689999886 23446788 45 112335665322 45788999999999963
No 97
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=63.21 E-value=5.8 Score=45.20 Aligned_cols=40 Identities=38% Similarity=0.821 Sum_probs=31.1
Q ss_pred CCCCCCCcccc--cCCcccccCCCCeeecccC-CCCccchhhhh
Q 001576 31 TRQSGSKLCRV--CGDEIGLKENGELFVACHE-CGFPVCRPCYE 71 (1050)
Q Consensus 31 ~~~~~~~~Cqi--Cgd~vg~~~~G~~fvaC~e-C~FpVCR~Cye 71 (1050)
+.+++|-.|.- ||..+-...| .--|.|.. |+|--||.|.|
T Consensus 310 vlq~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e 352 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKE 352 (446)
T ss_pred eeecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHh
Confidence 55677889986 9988666543 23478877 99999999998
No 98
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=61.76 E-value=5.9 Score=44.80 Aligned_cols=53 Identities=26% Similarity=0.630 Sum_probs=44.0
Q ss_pred CcccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCccccccc
Q 001576 37 KLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 37 ~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 91 (1050)
+-|.+|--++-++.+ ++.--|+|+.+.|-.|..---.-|...||.|.+....-
T Consensus 1 ~~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCCcccccceecCcc--ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 358889888888755 66666799999999999777778999999999998653
No 99
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.34 E-value=3.4 Score=46.21 Aligned_cols=59 Identities=25% Similarity=0.597 Sum_probs=36.4
Q ss_pred CCCCCCCCCCcccccCCcccccCCCCeeecccCCCC-ccchhhh-hhhhh-----cCCCCCCCCccccc
Q 001576 28 RPPTRQSGSKLCRVCGDEIGLKENGELFVACHECGF-PVCRPCY-EYERS-----EGSQCCPGCNTRYK 89 (1050)
Q Consensus 28 ~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~F-pVCR~Cy-eyerk-----eG~~~CPqCkt~Yk 89 (1050)
.-|.|+++.++|.|||..+-.++|-|-.+ |=-+ -+|---+ |+..| ---|-||=||++-+
T Consensus 216 glPtkhl~d~vCaVCg~~~~~s~~eegvi---enty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 216 GLPTKHLSDSVCAVCGQQIDVSVDEEGVI---ENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCCCCCCcchhHhhcchheeecchhhhh---hhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 45789999999999999977776433221 1111 1222222 33333 23489999999863
No 100
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=61.29 E-value=2.3 Score=38.02 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=21.7
Q ss_pred hhhhhhhhhcCCCCCCCCccccccc
Q 001576 67 RPCYEYERSEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 67 R~CyeyerkeG~~~CPqCkt~Ykr~ 91 (1050)
+-|+|++..||.=+||.|+..|--.
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~ 66 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIR 66 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEE
T ss_pred hhhhcccccCCEEEcCCCCCEEeCC
Confidence 5688899999999999999999644
No 101
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=60.94 E-value=8 Score=28.68 Aligned_cols=39 Identities=33% Similarity=0.822 Sum_probs=27.0
Q ss_pred ccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCC
Q 001576 39 CRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGC 84 (1050)
Q Consensus 39 CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqC 84 (1050)
|.||.+. . ....+ -.|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~----~-~~~~~--~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE----L-KDPVV--LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC----C-CCcEE--ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7788777 1 12211 15788899999976655677889987
No 102
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=56.57 E-value=6.6 Score=33.58 Aligned_cols=28 Identities=32% Similarity=0.977 Sum_probs=18.4
Q ss_pred cccccCCcccccCCCCeeecccCCCCccchhhhh
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYE 71 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~Cye 71 (1050)
.|.|||+++|+..+ +.= +=+| ||.+|++
T Consensus 1 ~C~iCg~kigl~~~----~k~-~DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR----FKI-KDGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc----eec-cCcc-chHHHHH
Confidence 59999999998643 111 1123 7788884
No 103
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.00 E-value=12 Score=41.33 Aligned_cols=50 Identities=30% Similarity=0.683 Sum_probs=39.3
Q ss_pred CCCCcccccCCcccccCCCCeeecccCCCCccchhhhhhh---hhcCCCCCCCCccccccc
Q 001576 34 SGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYE---RSEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyeye---rkeG~~~CPqCkt~Ykr~ 91 (1050)
.+---|.||=|.. =|+.|-| ||---|.||. |- .....++||=||..-..-
T Consensus 45 ~~~FdCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 45 GGFFDCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCceeeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCccccccccc
Confidence 3344899998764 3478888 9999999998 65 668889999999887543
No 104
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=54.89 E-value=11 Score=29.68 Aligned_cols=39 Identities=33% Similarity=0.798 Sum_probs=27.5
Q ss_pred ccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCC
Q 001576 39 CRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGC 84 (1050)
Q Consensus 39 CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqC 84 (1050)
|.||-|.... +++.- .||--.|+.|.+.-.+. +..||.|
T Consensus 1 C~iC~~~~~~-----~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----PVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----EEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC-----cCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 7788765332 44443 78999999999776666 6899987
No 105
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=54.56 E-value=12 Score=31.14 Aligned_cols=46 Identities=22% Similarity=0.547 Sum_probs=32.5
Q ss_pred CcccccCCcccccCCCCeeecccCCCCc-cchhhhhhhhhcCCCCCCCCcccccc
Q 001576 37 KLCRVCGDEIGLKENGELFVACHECGFP-VCRPCYEYERSEGSQCCPGCNTRYKR 90 (1050)
Q Consensus 37 ~~CqiCgd~vg~~~~G~~fvaC~eC~Fp-VCR~CyeyerkeG~~~CPqCkt~Ykr 90 (1050)
..|.||.++.-. -.+.+ |+=- +|..|++--.+ ....||-|+++.++
T Consensus 3 ~~C~iC~~~~~~----~~~~p---CgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRD----VVLLP---CGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSS----EEEET---TCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCCccCCccCCc----eEEeC---CCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 369999997321 23444 5777 99999966666 77999999998863
No 106
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=53.45 E-value=10 Score=29.84 Aligned_cols=40 Identities=30% Similarity=0.670 Sum_probs=29.5
Q ss_pred ccccCCcccccCCCCeeecccCCCCccchhhhhhhhh-cCCCCCCCC
Q 001576 39 CRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERS-EGSQCCPGC 84 (1050)
Q Consensus 39 CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyeyerk-eG~~~CPqC 84 (1050)
|.||.+...... --.+|+=..|+.|..--.+ .+...||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 788888744322 2346799999999966655 788889988
No 107
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=53.17 E-value=9.6 Score=47.88 Aligned_cols=56 Identities=30% Similarity=0.733 Sum_probs=41.1
Q ss_pred CCCCcccccCCcccccCCCC---eeecccCC--------------------CCccchhhh-hhh----hh--cCCCCCCC
Q 001576 34 SGSKLCRVCGDEIGLKENGE---LFVACHEC--------------------GFPVCRPCY-EYE----RS--EGSQCCPG 83 (1050)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~G~---~fvaC~eC--------------------~FpVCR~Cy-eye----rk--eG~~~CPq 83 (1050)
..-.+|.-|-.++..-.+=. +|..|..| .||.|-.|- ||+ |+ --.-+||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 44558999998875443333 69999999 499999998 565 44 23369999
Q ss_pred Cccccc
Q 001576 84 CNTRYK 89 (1050)
Q Consensus 84 Ckt~Yk 89 (1050)
|+-.|.
T Consensus 179 CGP~~~ 184 (750)
T COG0068 179 CGPHLF 184 (750)
T ss_pred cCCCeE
Confidence 997554
No 108
>PRK00420 hypothetical protein; Validated
Probab=51.92 E-value=6.9 Score=38.74 Aligned_cols=29 Identities=31% Similarity=0.700 Sum_probs=22.0
Q ss_pred ecccCCCCccchhhhhhhhhcCCCCCCCCcccccc
Q 001576 56 VACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKR 90 (1050)
Q Consensus 56 vaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr 90 (1050)
-.|..|++|.= +-++|.-.||.|++.+.-
T Consensus 24 ~~CP~Cg~pLf------~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLF------ELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCcce------ecCCCceECCCCCCeeee
Confidence 45777777763 237888999999999864
No 109
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=51.06 E-value=16 Score=30.00 Aligned_cols=38 Identities=29% Similarity=0.822 Sum_probs=28.6
Q ss_pred CCCcccccCCcccccCCCCeeecccCC-CCccchhhhhhhhhcC
Q 001576 35 GSKLCRVCGDEIGLKENGELFVACHEC-GFPVCRPCYEYERSEG 77 (1050)
Q Consensus 35 ~~~~CqiCgd~vg~~~~G~~fvaC~eC-~FpVCR~CyeyerkeG 77 (1050)
....|..|+..+ .|.-+ -|.+| .|-+|..||...+..+
T Consensus 3 ~~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~~ 41 (44)
T smart00291 3 HSYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAGG 41 (44)
T ss_pred CCcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcCC
Confidence 345799999853 36666 79999 9999999997554443
No 110
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=49.62 E-value=88 Score=33.87 Aligned_cols=60 Identities=13% Similarity=0.290 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCCCCCcc--hHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcc
Q 001576 952 PTTLIILNMVGVVAGVSDAINNGYGSWGP--LFGKLFFAFWVIVHLYPFLKGLMG-RQNRTPT 1011 (1050)
Q Consensus 952 ~~~Llilnlvaiv~Gi~r~i~~~~~~w~~--l~~~l~~~~Wvlvnl~PflkgL~g-R~~~~P~ 1011 (1050)
=..|+++.+++++.|+.-.++......|- +....+..+++++.+|-|+--+.| |..|.++
T Consensus 99 DssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~ 161 (226)
T COG4858 99 DSSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGT 161 (226)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCch
Confidence 34578888999999998888765443332 344567778888888888777766 3457777
No 111
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=49.36 E-value=13 Score=44.51 Aligned_cols=30 Identities=20% Similarity=0.479 Sum_probs=22.3
Q ss_pred CeeecccCCCCccchhhhhhhhhcCCCCCCCCccccccc
Q 001576 53 ELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 53 ~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 91 (1050)
+..++||+|+..+ ..+...||+|++...|+
T Consensus 219 ~~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~ 248 (419)
T PRK15103 219 QGLRSCSCCTAIL---------PADQPVCPRCHTKGYVR 248 (419)
T ss_pred cCCCcCCCCCCCC---------CCCCCCCCCCCCcCcCC
Confidence 3467899999864 23445899999998665
No 112
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK12495 hypothetical protein; Provisional
Probab=48.84 E-value=10 Score=41.45 Aligned_cols=29 Identities=34% Similarity=0.905 Sum_probs=21.5
Q ss_pred eecccCCCCccchhhhhhhhhcCCCCCCCCcccccc
Q 001576 55 FVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKR 90 (1050)
Q Consensus 55 fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr 90 (1050)
-.-|.+|+.||= +..|...||-|.+.+.+
T Consensus 42 a~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 42 NAHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred hhhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 344666666664 34899999999999975
No 114
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=47.78 E-value=6.4 Score=44.89 Aligned_cols=36 Identities=31% Similarity=0.814 Sum_probs=27.2
Q ss_pred cccccCCcccccCCCCeeecccCC-CCccchhhhhhhhhcC
Q 001576 38 LCRVCGDEIGLKENGELFVACHEC-GFPVCRPCYEYERSEG 77 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC-~FpVCR~CyeyerkeG 77 (1050)
-|.+|--++- .-.|+-|+|| +|-.|-||+.--...|
T Consensus 7 hCdvC~~d~T----~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDMT----DLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhhh----cceeeeeecccccceehhhhhcccccc
Confidence 5888876643 4489999999 9999999995443333
No 115
>PHA02926 zinc finger-like protein; Provisional
Probab=46.38 E-value=20 Score=39.45 Aligned_cols=62 Identities=27% Similarity=0.513 Sum_probs=43.2
Q ss_pred CCCCCcccccCCccccc--CCCCeeecccCCCCccchhhhhhhhhc-----CCCCCCCCccccccccCc
Q 001576 33 QSGSKLCRVCGDEIGLK--ENGELFVACHECGFPVCRPCYEYERSE-----GSQCCPGCNTRYKRHKGC 94 (1050)
Q Consensus 33 ~~~~~~CqiCgd~vg~~--~~G~~fvaC~eC~FpVCR~Cyeyerke-----G~~~CPqCkt~Ykr~kgs 94 (1050)
.+....|.||=+.+... ++..-|.-=..|+=.-|..|..--++. +...||.|+++++...=|
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 44567999999998544 222234444468899999999766553 346799999999865433
No 116
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=45.50 E-value=13 Score=44.16 Aligned_cols=30 Identities=20% Similarity=0.525 Sum_probs=20.9
Q ss_pred eeecccCCCCccchhhhhhhhhcCCCCCCCCccccccc
Q 001576 54 LFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 54 ~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 91 (1050)
..++|++|+..+ . ......||+|++..-|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 367899999865 1 13346799999987544
No 117
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=44.85 E-value=16 Score=32.27 Aligned_cols=33 Identities=30% Similarity=0.753 Sum_probs=24.2
Q ss_pred CCCcccccCCcccccCCCCeeecccCCCCccchh
Q 001576 35 GSKLCRVCGDEIGLKENGELFVACHECGFPVCRP 68 (1050)
Q Consensus 35 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~ 68 (1050)
.+|+|..||.....+.++.. .-|..|++-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~-~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRV-FTCPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccce-EEcCCCCCEECcH
Confidence 68899999999877555554 4577788876554
No 118
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=44.53 E-value=1.1e+02 Score=36.63 Aligned_cols=48 Identities=19% Similarity=0.079 Sum_probs=36.5
Q ss_pred CCCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCC
Q 001576 300 EPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGA 350 (1050)
Q Consensus 300 ~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~ 350 (1050)
.|.+||.+.|+|--.| |-=..++.||-|++.-.=|.=--.|.+.||=+
T Consensus 150 Ype~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDDfS 197 (603)
T KOG3737|consen 150 YPENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFS 197 (603)
T ss_pred CcccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEeccCC
Confidence 4679999999999998 99999999999998754332222466666643
No 119
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=43.82 E-value=25 Score=30.90 Aligned_cols=47 Identities=28% Similarity=0.740 Sum_probs=34.4
Q ss_pred cccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCcccccc
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKR 90 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr 90 (1050)
-|..|+.++-.+. .+-++-=.||-| |.+|-|... .++||-|+--+-+
T Consensus 7 nCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcccc
Confidence 6999999976553 244555578887 999996554 4799999976643
No 120
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=43.59 E-value=10 Score=43.69 Aligned_cols=29 Identities=31% Similarity=0.962 Sum_probs=24.3
Q ss_pred CCccchhhhhhhhhcCC--CCCCCCcccccc
Q 001576 62 GFPVCRPCYEYERSEGS--QCCPGCNTRYKR 90 (1050)
Q Consensus 62 ~FpVCR~CyeyerkeG~--~~CPqCkt~Ykr 90 (1050)
+|.|||.|+---+-+-+ +-||-|.++||.
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e 31 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKE 31 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccch
Confidence 58899999976666555 899999999974
No 121
>PRK04023 DNA polymerase II large subunit; Validated
Probab=43.16 E-value=17 Score=47.40 Aligned_cols=47 Identities=26% Similarity=0.638 Sum_probs=32.9
Q ss_pred CCCCcccccCCcccccCCCCeeecccCCCC-----ccchhhhhhhhhcCCCCCCCCcccccc
Q 001576 34 SGSKLCRVCGDEIGLKENGELFVACHECGF-----PVCRPCYEYERSEGSQCCPGCNTRYKR 90 (1050)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~G~~fvaC~eC~F-----pVCR~CyeyerkeG~~~CPqCkt~Ykr 90 (1050)
.....|.-||... ....|.+|+= ..|..| ....+.-.||.|+..-..
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C---G~~~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC---GIEVEEDECEKCGREPTP 675 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc---cCcCCCCcCCCCCCCCCc
Confidence 4455899999883 4568999984 367777 222334679999987653
No 122
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=41.83 E-value=11 Score=37.24 Aligned_cols=26 Identities=23% Similarity=0.567 Sum_probs=17.4
Q ss_pred ecccCCCCccchhhhhhhhhcCCCCCCCCcccc
Q 001576 56 VACHECGFPVCRPCYEYERSEGSQCCPGCNTRY 88 (1050)
Q Consensus 56 vaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Y 88 (1050)
+-|+.|+ ++++..+-.-.||+|+.+=
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 71 AWCWDCS-------QVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred EEcccCC-------CEEecCCcCccCcCCCCCC
Confidence 4576666 4566655556799999763
No 123
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=41.11 E-value=30 Score=37.54 Aligned_cols=49 Identities=18% Similarity=0.337 Sum_probs=38.4
Q ss_pred CCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHhhhh-cCcCCCccEEEE
Q 001576 488 HKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGKKLCYV 544 (1050)
Q Consensus 488 h~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~amcf~-~Dp~~g~~v~~V 544 (1050)
.--|-+.|++++ .+.++|++.+.=|-.+.+++++.+.+-.| .|| ++|.|
T Consensus 40 ~s~~~~yN~a~~----~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~----~~G~i 89 (217)
T PF13712_consen 40 KSMAAAYNEAME----KAKAKYLVFLHQDVFIINENWLEDILEIFEEDP----NIGMI 89 (217)
T ss_dssp S-TTTHHHHHGG----G--SSEEEEEETTEE-SSHHHHHHHHHHHHH-T----TEEEE
T ss_pred cCHHHHHHHHHH----hCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCC----CccEE
Confidence 346788999999 48999999999999999999999999999 898 66554
No 124
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=40.07 E-value=18 Score=29.90 Aligned_cols=27 Identities=41% Similarity=0.918 Sum_probs=15.0
Q ss_pred cccccCCcccccCCCCeeecccCCCCcc
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGFPV 65 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~FpV 65 (1050)
.|+-||..+..+++.. -+-|..|+.++
T Consensus 5 ~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 5666777666655443 34555555443
No 125
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=39.24 E-value=4.5e+02 Score=30.96 Aligned_cols=18 Identities=22% Similarity=0.627 Sum_probs=13.7
Q ss_pred eecCcccccccccchhHH
Q 001576 882 RWSGVSIEDWWRNEQFWV 899 (1050)
Q Consensus 882 rwsG~s~~~wWr~e~~W~ 899 (1050)
+-.|-.++.||..+.|+-
T Consensus 173 ~~NGS~Ik~WW~~HHy~s 190 (330)
T PF07851_consen 173 IVNGSRIKGWWVFHHYIS 190 (330)
T ss_pred ccCCCcchHHHHHHHHHH
Confidence 345778899998888873
No 126
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=39.22 E-value=20 Score=31.75 Aligned_cols=30 Identities=33% Similarity=0.759 Sum_probs=24.3
Q ss_pred CCCcccccCCc---ccccCCCCeeecccCCCCc
Q 001576 35 GSKLCRVCGDE---IGLKENGELFVACHECGFP 64 (1050)
Q Consensus 35 ~~~~CqiCgd~---vg~~~~G~~fvaC~eC~Fp 64 (1050)
.|-+|.-|+.- ++..+||...+-|-+|+|.
T Consensus 8 AGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 8 AGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred ccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 46689999854 5566899999999999985
No 127
>PRK07220 DNA topoisomerase I; Validated
Probab=39.10 E-value=18 Score=46.32 Aligned_cols=48 Identities=23% Similarity=0.695 Sum_probs=32.4
Q ss_pred CcccccCCccccc--CCCCeeecccCCCCccchhhhhhhhh----cCCCCCCCCcc
Q 001576 37 KLCRVCGDEIGLK--ENGELFVACHECGFPVCRPCYEYERS----EGSQCCPGCNT 86 (1050)
Q Consensus 37 ~~CqiCgd~vg~~--~~G~~fvaC~eC~FpVCR~Cyeyerk----eG~~~CPqCkt 86 (1050)
..|..||.++... ..|..|..|. +||-|+--+-..++ .-+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 4899999875442 3466799995 57888755543321 12478999985
No 128
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=38.63 E-value=25 Score=29.56 Aligned_cols=32 Identities=31% Similarity=0.953 Sum_probs=26.0
Q ss_pred cccccCCcccccCCCCeeecccCC-CCccchhhhhhh
Q 001576 38 LCRVCGDEIGLKENGELFVACHEC-GFPVCRPCYEYE 73 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC-~FpVCR~Cyeye 73 (1050)
.|..|+.++. +...+.|.+| .|-+|-+||..-
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~~g 34 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFSAG 34 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhhCc
Confidence 5888987643 4588999999 999999999643
No 129
>PRK11827 hypothetical protein; Provisional
Probab=38.10 E-value=22 Score=31.67 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=18.0
Q ss_pred ccchhhhhhhhhcCCCCCCCCccccccccCcc
Q 001576 64 PVCRPCYEYERSEGSQCCPGCNTRYKRHKGCA 95 (1050)
Q Consensus 64 pVCR~CyeyerkeG~~~CPqCkt~Ykr~kgsp 95 (1050)
|+|+-=.+|...+..=+|..|+-.|--..|=|
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laYPI~dgIP 43 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAFPLRDGIP 43 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeeccccCCcc
Confidence 44444444443333467788888886655544
No 130
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=37.68 E-value=67 Score=37.90 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=28.1
Q ss_pred CCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHh
Q 001576 487 HHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAM 529 (1050)
Q Consensus 487 hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~am 529 (1050)
.+.|+-.|=-.+-... +.+..||-.+|||.|+| -++.|-.
T Consensus 142 R~GKgEGMiiG~lLAk-~~g~~YVGFiDADNyiP--GaV~EYv 181 (393)
T PRK14503 142 RSGKGEGMIIGLLLAK-ALGARYVGFVDADNYIP--GAVNEYV 181 (393)
T ss_pred ecCcchHHHHHHHHHH-HhCCCeEeEeecccCCC--chHHHHH
Confidence 4568888875333222 45899999999999985 5666644
No 131
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=37.66 E-value=15 Score=28.47 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=13.4
Q ss_pred hhhhhcCCCCCCCCcccccc
Q 001576 71 EYERSEGSQCCPGCNTRYKR 90 (1050)
Q Consensus 71 eyerkeG~~~CPqCkt~Ykr 90 (1050)
.|+-++....||.|+.+-..
T Consensus 10 ~y~~~~~~~~CP~Cg~~~~~ 29 (33)
T cd00350 10 IYDGEEAPWVCPVCGAPKDK 29 (33)
T ss_pred EECCCcCCCcCcCCCCcHHH
Confidence 44444467899999886543
No 132
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.58 E-value=21 Score=40.42 Aligned_cols=22 Identities=32% Similarity=0.966 Sum_probs=17.9
Q ss_pred CCCCCcccccCCcccccCCCCeeecccCCC
Q 001576 33 QSGSKLCRVCGDEIGLKENGELFVACHECG 62 (1050)
Q Consensus 33 ~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~ 62 (1050)
..++..|.-||+- -|++|-.|+
T Consensus 226 ~~~~~~C~~CGg~--------rFlpC~~C~ 247 (281)
T KOG2824|consen 226 CEGGGVCESCGGA--------RFLPCSNCH 247 (281)
T ss_pred CCCCCcCCCcCCc--------ceEecCCCC
Confidence 6667899999965 799998884
No 133
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.53 E-value=29 Score=41.30 Aligned_cols=53 Identities=21% Similarity=0.483 Sum_probs=37.0
Q ss_pred CCCCCCCC-CcccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCccccc
Q 001576 29 PPTRQSGS-KLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYK 89 (1050)
Q Consensus 29 ~~~~~~~~-~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Yk 89 (1050)
+.+.++.. ..|.||.+..- ++.+ -.|+--.|..|...-... ...||.|++.+.
T Consensus 18 ~~l~~Le~~l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred ccccccccccCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 34555554 49999998642 2333 368999999999654433 458999999985
No 134
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=36.48 E-value=18 Score=43.00 Aligned_cols=51 Identities=24% Similarity=0.607 Sum_probs=37.3
Q ss_pred CCcccccCCcccccCCCCeeecccCCC-CccchhhhhhhhhcCCCCCCCCccccccccC
Q 001576 36 SKLCRVCGDEIGLKENGELFVACHECG-FPVCRPCYEYERSEGSQCCPGCNTRYKRHKG 93 (1050)
Q Consensus 36 ~~~CqiCgd~vg~~~~G~~fvaC~eC~-FpVCR~CyeyerkeG~~~CPqCkt~Ykr~kg 93 (1050)
...|-.|..+|. |-.+|-|.||. |-+|-+|+.--..-|.+ ||.-+|.-.+.
T Consensus 14 ky~C~~C~~dit----~~i~ikCaeCp~fdLCl~CFs~GaE~~~H---~~~H~Yrim~~ 65 (438)
T KOG0457|consen 14 KYNCDYCSLDIT----GLIRIKCAECPDFDLCLQCFSVGAETGKH---QNDHPYRIMDT 65 (438)
T ss_pred CCCCccHhHHhc----cceEEEeecCCCcchhHHHHhcccccCCC---CCCCCceeecC
Confidence 348999998854 66899999998 99999999554444443 44567765543
No 135
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=36.04 E-value=27 Score=35.31 Aligned_cols=50 Identities=28% Similarity=0.743 Sum_probs=36.5
Q ss_pred CCCCCcccccCCccccc--CCCCeeecccCCCCccchhhhhh---hhhcCCCCCCCCcc
Q 001576 33 QSGSKLCRVCGDEIGLK--ENGELFVACHECGFPVCRPCYEY---ERSEGSQCCPGCNT 86 (1050)
Q Consensus 33 ~~~~~~CqiCgd~vg~~--~~G~~fvaC~eC~FpVCR~Cyey---erkeG~~~CPqCkt 86 (1050)
...++.|..||....+- ..| -|+.|- .||.|+- |+. ...+....||+|+.
T Consensus 14 ~~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 14 LKTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred cccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 34578999999995554 468 999993 6999996 221 22355689999996
No 136
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=35.54 E-value=16 Score=36.32 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=9.3
Q ss_pred CCCCCCccccccc
Q 001576 79 QCCPGCNTRYKRH 91 (1050)
Q Consensus 79 ~~CPqCkt~Ykr~ 91 (1050)
..||+|+.+-.+.
T Consensus 89 ~~CP~Cgs~~~~i 101 (117)
T PRK00564 89 GVCEKCHSKNVII 101 (117)
T ss_pred CcCcCCCCCceEE
Confidence 3599999875443
No 137
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=35.31 E-value=19 Score=30.88 Aligned_cols=28 Identities=29% Similarity=0.643 Sum_probs=19.5
Q ss_pred CcccccCCcccccCCCCeeecccCCCCcc
Q 001576 37 KLCRVCGDEIGLKENGELFVACHECGFPV 65 (1050)
Q Consensus 37 ~~CqiCgd~vg~~~~G~~fvaC~eC~FpV 65 (1050)
-.|..||.++.++. ...-+.|..|++.|
T Consensus 7 Y~C~~Cg~~~~~~~-~~~~irCp~Cg~rI 34 (49)
T COG1996 7 YKCARCGREVELDQ-ETRGIRCPYCGSRI 34 (49)
T ss_pred EEhhhcCCeeehhh-ccCceeCCCCCcEE
Confidence 47889999985443 22347888888875
No 138
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.19 E-value=5.7 Score=45.99 Aligned_cols=45 Identities=22% Similarity=0.598 Sum_probs=37.9
Q ss_pred cccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCcccc
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRY 88 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Y 88 (1050)
+|.||-+=+-.+ .--.||+--+|+.|.--.-++||.-||-|++..
T Consensus 45 ~c~icl~llk~t------mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 45 ICPICLSLLKKT------MTTKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred ccHHHHHHHHhh------cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 899998876554 222489999999999999999999999999876
No 139
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=34.81 E-value=38 Score=27.54 Aligned_cols=43 Identities=26% Similarity=0.661 Sum_probs=31.5
Q ss_pred ccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCcc
Q 001576 39 CRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNT 86 (1050)
Q Consensus 39 CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt 86 (1050)
|.+|-.+. +++..+++. .|+=-+|..|.+-.- .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~~l~--~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRLT--SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCeEEc--ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88999887 333333332 679999999995554 67789999985
No 140
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=34.77 E-value=21 Score=26.85 Aligned_cols=28 Identities=36% Similarity=0.897 Sum_probs=11.9
Q ss_pred cccccCCcccccCCCCeeecccCCCCccchhh
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGFPVCRPC 69 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~C 69 (1050)
.|.+|+.++.. +.+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~~----~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDG----GWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S------EEE-TTT-----HHH
T ss_pred cCCcCCCcCCC----CceEECccCCCccChhc
Confidence 58999988543 57888999999998877
No 141
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=34.49 E-value=48 Score=38.27 Aligned_cols=44 Identities=27% Similarity=0.601 Sum_probs=28.5
Q ss_pred CCCcccccCCc----ccc---cCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCccc
Q 001576 35 GSKLCRVCGDE----IGL---KENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTR 87 (1050)
Q Consensus 35 ~~~~CqiCgd~----vg~---~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~ 87 (1050)
+.+.|.+||.. +.. .++|.-+.-|.-|+. |..-.+-.||.|+..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~t---------eW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCAT---------EWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCC---------cccccCccCCCCCCC
Confidence 34599999988 111 258888999977753 333334567777653
No 142
>COG4818 Predicted membrane protein [Function unknown]
Probab=33.87 E-value=3.8e+02 Score=26.31 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCe
Q 001576 900 IGGVSAHLFAVFQGLLKVLAGVDTNF 925 (1050)
Q Consensus 900 I~~vsa~lfAv~~aLlk~L~g~~~~F 925 (1050)
|.+...++++.+.+++-.+.-++.+|
T Consensus 5 iegaLCY~lgwitGllFlllEre~~F 30 (105)
T COG4818 5 IEGALCYLLGWITGLLFLLLERESKF 30 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCcc
Confidence 34555777788888887776666666
No 143
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=33.74 E-value=16 Score=42.84 Aligned_cols=69 Identities=28% Similarity=0.569 Sum_probs=43.4
Q ss_pred CCCcccccCCcccccCCCCeeecccCCCCccchhh-hhhhhhcCCCCCCCCcccc---cc--ccCccccCCCCCCCCC
Q 001576 35 GSKLCRVCGDEIGLKENGELFVACHECGFPVCRPC-YEYERSEGSQCCPGCNTRY---KR--HKGCARVAGDEEDNFD 106 (1050)
Q Consensus 35 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~C-yeyerkeG~~~CPqCkt~Y---kr--~kgsprv~gd~ee~~~ 106 (1050)
-+--|.-||+.+|+...--.-.+|- --.=--| |||--++|.+.||.|+.-- +| .-|+|-|+.+-++-++
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCs---HIfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vesest~~~v 438 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCS---HIFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESESTDRCV 438 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchh---HHHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCccccccccccc
Confidence 3457999999999985444455561 1111123 5677899999999998322 32 2367777766544443
No 144
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=33.40 E-value=9.9 Score=37.36 Aligned_cols=29 Identities=31% Similarity=0.746 Sum_probs=15.6
Q ss_pred ecccCCCCccchhhhhhhhhcCCCCCCCCccccccc
Q 001576 56 VACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 56 vaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 91 (1050)
+-|+.|+. +++..+..-.||+|+.+..+.
T Consensus 71 ~~C~~Cg~-------~~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 71 ARCRDCGH-------EFEPDEFDFSCPRCGSPDVEI 99 (113)
T ss_dssp EEETTTS--------EEECHHCCHH-SSSSSS-EEE
T ss_pred EECCCCCC-------EEecCCCCCCCcCCcCCCcEE
Confidence 44666654 344444445599999986544
No 145
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.13 E-value=48 Score=41.34 Aligned_cols=49 Identities=18% Similarity=0.127 Sum_probs=41.4
Q ss_pred CCCCCCeeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCch
Q 001576 301 PNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASM 352 (1050)
Q Consensus 301 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ 352 (1050)
.+.||.+-|+|+-+| |...+...||-|++..-=|.=--.+.|.||+...
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 456999999999999 9999999999998887655545578999998765
No 146
>PRK11595 DNA utilization protein GntX; Provisional
Probab=32.39 E-value=30 Score=37.77 Aligned_cols=40 Identities=28% Similarity=0.750 Sum_probs=26.3
Q ss_pred CCcccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCcccc
Q 001576 36 SKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRY 88 (1050)
Q Consensus 36 ~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Y 88 (1050)
.+.|.+||..+..++ ..+|..|.+.-..- ...||+|+.+.
T Consensus 5 P~~C~~C~~~~~~~~------------~~lC~~C~~~l~~~-~~~C~~Cg~~~ 44 (227)
T PRK11595 5 PGLCWLCRMPLALSH------------WGICSVCSRALRTL-KTCCPQCGLPA 44 (227)
T ss_pred CCcCccCCCccCCCC------------CcccHHHHhhCCcc-cCcCccCCCcC
Confidence 357999998874321 23788887554333 35899998763
No 147
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=32.38 E-value=18 Score=35.65 Aligned_cols=28 Identities=21% Similarity=0.460 Sum_probs=16.3
Q ss_pred ecccCCCCccchhhhhhhhhcCC-CCCCCCcccccc
Q 001576 56 VACHECGFPVCRPCYEYERSEGS-QCCPGCNTRYKR 90 (1050)
Q Consensus 56 vaC~eC~FpVCR~CyeyerkeG~-~~CPqCkt~Ykr 90 (1050)
.-|+.|+ ++++..+-. -.||+|+.+-.+
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~ 99 (114)
T PRK03681 71 CWCETCQ-------QYVTLLTQRVRRCPQCHGDMLR 99 (114)
T ss_pred EEcccCC-------CeeecCCccCCcCcCcCCCCcE
Confidence 4466665 244443333 569999976433
No 148
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=32.18 E-value=21 Score=35.28 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=17.3
Q ss_pred ecccCCCCccchhhhhhhhhcCCCCCCCCccccccc
Q 001576 56 VACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 56 vaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 91 (1050)
.-|+.|+ ++++..+-.-.||+|+.+-.+.
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~~~i 99 (115)
T TIGR00100 71 CECEDCS-------EEVSPEIDLYRCPKCHGIMLQV 99 (115)
T ss_pred EEcccCC-------CEEecCCcCccCcCCcCCCcEE
Confidence 4465555 3344444456799999875443
No 149
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=31.32 E-value=44 Score=30.18 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=30.8
Q ss_pred cccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCccccc
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYK 89 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Yk 89 (1050)
.|.||++ ||.+ +.++ .||.-.||.|-+--.++++..||.|+.+..
T Consensus 6 ~CpIt~~-lM~d----PVi~--~~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 6 LCPITGE-LMRD----PVIL--PSGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp B-TTTSS-B-SS----EEEE--TTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred CCcCcCc-HhhC----ceeC--CcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 6888875 5554 4444 356999999998888888899999988764
No 150
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=31.16 E-value=35 Score=28.17 Aligned_cols=31 Identities=32% Similarity=0.769 Sum_probs=24.9
Q ss_pred cccccCCcccccCCCCeeecccCCC-Cccchhhhhhh
Q 001576 38 LCRVCGDEIGLKENGELFVACHECG-FPVCRPCYEYE 73 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~-FpVCR~Cyeye 73 (1050)
.|.+|+..+. | ....|.+|. |-+|.+||...
T Consensus 2 ~C~~C~~~i~----g-~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 2 SCDGCLKPIV----G-VRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCcCCCCCCc----C-CEEECCCCCCCcCHHHHHCcC
Confidence 5889998532 5 788999996 99999999643
No 151
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=30.90 E-value=14 Score=32.61 Aligned_cols=13 Identities=31% Similarity=0.869 Sum_probs=7.8
Q ss_pred CCCCCCCcccccc
Q 001576 78 SQCCPGCNTRYKR 90 (1050)
Q Consensus 78 ~~~CPqCkt~Ykr 90 (1050)
.-+||+||+-|..
T Consensus 44 ~PVCP~Ck~iye~ 56 (58)
T PF11238_consen 44 FPVCPECKEIYES 56 (58)
T ss_pred CCCCcCHHHHHHh
Confidence 3556666666653
No 152
>PRK14973 DNA topoisomerase I; Provisional
Probab=30.53 E-value=37 Score=44.73 Aligned_cols=48 Identities=27% Similarity=0.711 Sum_probs=31.4
Q ss_pred CcccccCCccccc--CCCCeeecccCCCCccchhhhhhhhh-cC-----CCCCCCCccc
Q 001576 37 KLCRVCGDEIGLK--ENGELFVACHECGFPVCRPCYEYERS-EG-----SQCCPGCNTR 87 (1050)
Q Consensus 37 ~~CqiCgd~vg~~--~~G~~fvaC~eC~FpVCR~Cyeyerk-eG-----~~~CPqCkt~ 87 (1050)
..|..||.++-.. ..|. |..|. +||-|+-.+...+. .| .+.||.|+.+
T Consensus 589 ~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred ccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 4799999876432 2344 99996 66888855544221 12 3689999974
No 153
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=29.97 E-value=27 Score=32.14 Aligned_cols=49 Identities=27% Similarity=0.378 Sum_probs=31.5
Q ss_pred hhcCCchHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEec
Q 001576 691 KRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCV 769 (1050)
Q Consensus 691 ~~fG~s~~f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~ 769 (1050)
..+|....+.++.+.++||+++. -| || |. ||.+++.|+..+|.++....
T Consensus 18 ~~~Gg~~~~~~~~f~~vnGfde~----------------------f~----gW--G~--ED~Dl~~Rl~~~g~~~~~~~ 66 (78)
T PF02709_consen 18 NFFGGVFAISREDFEKVNGFDER----------------------FW----GW--GG--EDDDLYNRLWKAGLKIVRVP 66 (78)
T ss_dssp T---SEEEEEHHHHHHTTSS-SS-----------------------T----SC--SS--HHHHHHHHHHHTT---B-SS
T ss_pred CeeEEEEEEeHHHHHHcCCCCcc----------------------cc----cc--Cc--cHHHHHHHHHHcCCeEEecC
Confidence 34688888888899999999862 11 22 33 99999999999998876653
No 154
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=29.93 E-value=22 Score=45.32 Aligned_cols=72 Identities=25% Similarity=0.625 Sum_probs=49.2
Q ss_pred eEEEeccCCC-CC--CCCCCCCCcccccCCcccccCC----CCeeecccCC--------------------CCccchhhh
Q 001576 18 ELHVMHANEE-RP--PTRQSGSKLCRVCGDEIGLKEN----GELFVACHEC--------------------GFPVCRPCY 70 (1050)
Q Consensus 18 ~~~~~~~~~~-~~--~~~~~~~~~CqiCgd~vg~~~~----G~~fvaC~eC--------------------~FpVCR~Cy 70 (1050)
.|..+++..+ .. ..-...-.+|.-|-+++ .|.+ +=+|.-|..| .|+.|..|.
T Consensus 47 ~F~I~~S~~~~~~~~~~ippD~a~C~~Cl~E~-~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~ 125 (711)
T TIGR00143 47 TFRIRESKNGGLSLLSIIPADVATCSDCLEEM-LDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCA 125 (711)
T ss_pred CeEEEecCCCCCCcceecCCchhhHHHHHHHh-cCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHH
Confidence 5666666322 11 22234556999999997 4433 4489999999 499999999
Q ss_pred -hhh----hhc--CCCCCCCCcccccc
Q 001576 71 -EYE----RSE--GSQCCPGCNTRYKR 90 (1050)
Q Consensus 71 -eye----rke--G~~~CPqCkt~Ykr 90 (1050)
||. |+- ---+||.|+=++.-
T Consensus 126 ~ey~~p~~rr~h~~~~~C~~Cgp~l~l 152 (711)
T TIGR00143 126 KEYKDPLDRRFHAQPIACPRCGPQLNF 152 (711)
T ss_pred HHhcCCccccCCCCCccCCCCCcEEEE
Confidence 664 332 23589999998864
No 155
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=29.71 E-value=26 Score=43.64 Aligned_cols=45 Identities=24% Similarity=0.529 Sum_probs=26.2
Q ss_pred CCCCCCcccccCCcccccCCCCe-----------eec-----ccCCCCccchhhhhhhhhcC
Q 001576 32 RQSGSKLCRVCGDEIGLKENGEL-----------FVA-----CHECGFPVCRPCYEYERSEG 77 (1050)
Q Consensus 32 ~~~~~~~CqiCgd~vg~~~~G~~-----------fva-----C~eC~FpVCR~CyeyerkeG 77 (1050)
......+|.|||.+-.+..+-.. |++ =.-=.||||..|+..- .+|
T Consensus 194 ~~~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~l-~~G 254 (593)
T PF09484_consen 194 ESKKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALKL-EEG 254 (593)
T ss_pred ccCCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHHH-HHH
Confidence 34556689999998433333221 222 0123789999999443 344
No 156
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=29.56 E-value=38 Score=27.98 Aligned_cols=44 Identities=25% Similarity=0.713 Sum_probs=31.5
Q ss_pred cccccCCcccccCCCCeeecccCCCCccchhhhhhhhh-----cCCCCCCCCc
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERS-----EGSQCCPGCN 85 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyeyerk-----eG~~~CPqCk 85 (1050)
+|+|||. ..+++..+.|..|.--+=..|.....+ ++.=.||.|+
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 5899999 566778999999987766777754422 3456677665
No 157
>COG1813 Predicted transcription factor, homolog of eukaryotic MBF1 [Transcription]
Probab=29.44 E-value=35 Score=36.02 Aligned_cols=35 Identities=26% Similarity=0.604 Sum_probs=20.8
Q ss_pred ccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcC
Q 001576 39 CRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEG 77 (1050)
Q Consensus 39 CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG 77 (1050)
|.|||-.+-.. - -|.-.-=-.-||+.||.|.++..
T Consensus 6 CEiCG~~i~~~---~-~v~vegsel~VC~~Cak~G~~~~ 40 (165)
T COG1813 6 CELCGREIDKP---I-KVKVEGAELTVCDDCAKFGTAAK 40 (165)
T ss_pred eeccccccCCC---e-eEEeecceeehhHHHHHhccCcc
Confidence 99999886521 0 11111223567899998885543
No 158
>PRK07219 DNA topoisomerase I; Validated
Probab=29.33 E-value=33 Score=44.53 Aligned_cols=53 Identities=28% Similarity=0.718 Sum_probs=30.7
Q ss_pred CCcccccCCccccc--CCCCeeecccCCCCccchhhhhhhh----hcCCCCCCCCccccccc
Q 001576 36 SKLCRVCGDEIGLK--ENGELFVACHECGFPVCRPCYEYER----SEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 36 ~~~CqiCgd~vg~~--~~G~~fvaC~eC~FpVCR~Cyeyer----keG~~~CPqCkt~Ykr~ 91 (1050)
...|..||..+... ..|. |..|. +||-|+--+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 34677787664432 2454 88885 5777753332211 12347899998876543
No 159
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=29.21 E-value=1.3e+03 Score=29.48 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=19.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhCCcch
Q 001576 829 VYPFTSIPLLAYCTLPAICLLTGKFII 855 (1050)
Q Consensus 829 ly~l~sl~~liylllP~l~Ll~G~~ii 855 (1050)
.-|-+++..+.++.+|.+|...|..-+
T Consensus 45 ~~~~~a~~~i~liaip~i~~~ig~~~f 71 (952)
T TIGR02921 45 HPIEFALALILLIAIPAICIGIGGTCF 71 (952)
T ss_pred chHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 345567777888889999988776543
No 160
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=29.10 E-value=29 Score=35.82 Aligned_cols=43 Identities=37% Similarity=0.840 Sum_probs=26.5
Q ss_pred CCCcccccCCcccccCCCCeeecccCCCCccchhhhhhh-hhcCCCCCCCCcc
Q 001576 35 GSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYE-RSEGSQCCPGCNT 86 (1050)
Q Consensus 35 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyeye-rkeG~~~CPqCkt 86 (1050)
.+..|..||+- -||+|.+|.= -|+--.+.. ...+-..||.|++
T Consensus 98 ~~~~C~~Cgg~--------rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCGGA--------RFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCCCc--------CeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 45679999854 8999998841 122212111 1234478999986
No 161
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=28.54 E-value=51 Score=29.40 Aligned_cols=48 Identities=33% Similarity=0.695 Sum_probs=34.2
Q ss_pred CCcccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCC-CCCCCCc
Q 001576 36 SKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGS-QCCPGCN 85 (1050)
Q Consensus 36 ~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~-~~CPqCk 85 (1050)
..+|.-||-.|-..|++-.| +|.+|+=-+-.-|- --||-|+ -.||.|+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F-~CPnCGe~~I~Rc~-~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKF-PCPNCGEVEIYRCA-KCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEe-eCCCCCceeeehhh-hHHHcCCceECCCcC
Confidence 34899999999887777665 68899944444444 3356666 6799886
No 162
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=28.51 E-value=67 Score=28.60 Aligned_cols=49 Identities=29% Similarity=0.609 Sum_probs=35.5
Q ss_pred CCcccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCC-CCCCCCcc
Q 001576 36 SKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGS-QCCPGCNT 86 (1050)
Q Consensus 36 ~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~-~~CPqCkt 86 (1050)
...|.-||-.|.-.+.+- -.+|.+|+=-+-+=|. .-||-++ -.||.|+-
T Consensus 7 ~~~CtSCg~~i~~~~~~~-~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 7 PPKCTSCGIEIAPREKAV-KFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCGF 56 (59)
T ss_pred CccccCCCCcccCCCccC-EeeCCCCCCeeEeech-hHHhcCCceECCCCCC
Confidence 458999999987666564 4579999877455576 5567666 67999973
No 163
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=28.09 E-value=1.7e+02 Score=26.88 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=18.7
Q ss_pred cchhhHHHHhhccCCCCCEEEEecCCCCC
Q 001576 491 AGAMNALVRVSAVLTNAPFILNLDCDHYL 519 (1050)
Q Consensus 491 AGalNallrvSav~tngp~il~lDcD~~~ 519 (1050)
...+|++.+. ..++.+|+.+|+|=++
T Consensus 59 ~~~~~~~~~~---~~~~dWvl~~D~DEfl 84 (97)
T PF13704_consen 59 RAWRNALIER---AFDADWVLFLDADEFL 84 (97)
T ss_pred HHHHHHHHHh---CCCCCEEEEEeeeEEE
Confidence 4455565552 3588999999999874
No 164
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=27.30 E-value=48 Score=27.80 Aligned_cols=35 Identities=20% Similarity=0.525 Sum_probs=25.7
Q ss_pred cccccCCcccccCCCCeeecccCCC-CccchhhhhhhhhcC
Q 001576 38 LCRVCGDEIGLKENGELFVACHECG-FPVCRPCYEYERSEG 77 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~-FpVCR~CyeyerkeG 77 (1050)
.|.+||-++.. +..-|-.++ +-+|.+||+-.|--+
T Consensus 2 ~C~~Cg~D~t~-----vryh~~~~~~~dLC~~CF~~G~f~~ 37 (45)
T cd02336 2 HCFTCGNDCTR-----VRYHNLKAKKYDLCPSCYQEGRFPS 37 (45)
T ss_pred cccCCCCccCc-----eEEEecCCCccccChHHHhCcCCCC
Confidence 69999999742 656666665 999999996554433
No 165
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=27.18 E-value=23 Score=37.46 Aligned_cols=34 Identities=38% Similarity=0.880 Sum_probs=21.6
Q ss_pred CcccccCCcccc----cCCCCe-eecccCCCCccchhhh
Q 001576 37 KLCRVCGDEIGL----KENGEL-FVACHECGFPVCRPCY 70 (1050)
Q Consensus 37 ~~CqiCgd~vg~----~~~G~~-fvaC~eC~FpVCR~Cy 70 (1050)
.+|..||.+--. ..+|+. .+.-.|==.|+||.||
T Consensus 138 avC~~Cg~~A~~t~R~~~~~~~i~iGg~e~Y~~~Cr~cy 176 (176)
T PF00265_consen 138 AVCEVCGRKATFTQRIVDDGEQILIGGSEKYEPVCRKCY 176 (176)
T ss_dssp EE-TTTSSEE-EEEEEETTSSSS-TTSTTTEEEE-CTTH
T ss_pred cEECCCCCceeEEEEEcCCCCEEEECCCCeEEEechhhC
Confidence 589999988333 244543 5556787889999998
No 166
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=27.15 E-value=1.1e+03 Score=33.10 Aligned_cols=108 Identities=27% Similarity=0.333 Sum_probs=63.0
Q ss_pred hhcCCchHHHhhhhhhcCCCCCCCCchhHHHHHHHhhccccccccccccccceecccccchHHHHHHHHhCCcEEEEecC
Q 001576 691 KRFGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVP 770 (1050)
Q Consensus 691 ~~fG~s~~f~~sal~e~GG~~~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITED~~Tg~rLh~~GWrsvY~~p 770 (1050)
-+||.-.+|-+--.-.-||++. |..| =.++||+..|+....||-++.++ +
T Consensus 1146 ~HYGHPD~~drif~~TRGGvSK----------Ask~-------------------inlsEDIfAG~n~tlRgG~itH~-E 1195 (1679)
T KOG0916|consen 1146 LHYGHPDVFDRIFHITRGGVSK----------ASKG-------------------INLSEDIFAGFNATLRGGNITHH-E 1195 (1679)
T ss_pred eecCCCcHhhhhhhhccccchH----------hhcc-------------------cccchHhhhhhhHHhhCCCcccc-e
Confidence 3567777766533345688765 2221 27899999999999999888877 3
Q ss_pred CCcccc----ccCCCCHHHHHHHhHhhhchhHHHHHhhccccccccCCCCCcccch-hhhhhhhhhhhHHH
Q 001576 771 KRPAFK----GSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERL-AYTNTIVYPFTSIP 836 (1050)
Q Consensus 771 ~~~af~----G~aP~tl~~~l~QR~RWA~G~lQil~~k~~Pl~~g~~~~Ls~~QRL-~Yl~~~ly~l~sl~ 836 (1050)
-..+=+ |....+ .=-..-+.|+=+-.++|.- |-++.++.+-+-| +|+.+.-+++.++.
T Consensus 1196 YiQvGKGRDvGlnqI~-----~FeaKia~G~GEQ~LSRd~---YrLG~~ldffRmLSfyftt~GF~~n~m~ 1258 (1679)
T KOG0916|consen 1196 YIQVGKGRDVGLNQIS-----NFEAKIANGNGEQTLSRDY---YRLGTQLDFFRMLSFYFTTVGFYFNNMF 1258 (1679)
T ss_pred eeecccccccCcchhh-----hhhhhhcCCCcchhhhHHH---HHhcccccHHHHHHHHhccccHHHHhHH
Confidence 222111 222221 1123568888888877742 2235567776655 34444444454444
No 167
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.42 E-value=23 Score=34.21 Aligned_cols=44 Identities=34% Similarity=0.576 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccccccCC-------CCCCCCCCCCChhhHHhhhcCCCC
Q 001576 409 KREYEEFKVRINALVSKAQKKPEEGWVMQDG-------TPWPGNNTRDHPGMIQVYLGSEGA 463 (1050)
Q Consensus 409 kreYee~k~ri~~l~~k~~~vp~e~w~m~dg-------t~w~g~~~~dhp~iiqv~l~~~g~ 463 (1050)
|-||+|+|+. . ..+|+|+|- +.|.-.+--.||.+.+-|--.+|+
T Consensus 20 k~eyqel~~~-------~----~d~W~m~Dlk~k~~~~sd~tiknlL~hPrl~k~L~iengG 70 (107)
T COG4707 20 KVEYQELKEK-------D----FDGWVMMDLKEKKSNRSDWTIKNLLLHPRLKKMLSIENGG 70 (107)
T ss_pred HHHHHHHHHh-------h----hcchhhhHHHHHhcccchhHHHHHhcCchhhhheeeecCc
Confidence 5699998852 1 368999876 346555566888888877666663
No 168
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=26.25 E-value=40 Score=29.71 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=12.8
Q ss_pred hcCCCCCCCCccccc------cccCccccCCCCCCCCC
Q 001576 75 SEGSQCCPGCNTRYK------RHKGCARVAGDEEDNFD 106 (1050)
Q Consensus 75 keG~~~CPqCkt~Yk------r~kgsprv~gd~ee~~~ 106 (1050)
.++|..-|=|-+|=| -..|+-||+|.+++++.
T Consensus 15 ~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~~~~~~ 52 (57)
T PF03884_consen 15 SPENPFRPFCSERCKLIDLGRWANEEYRIPGEPDDEDE 52 (57)
T ss_dssp SSSSS--SSSSHHHHHHHHS-SSSSS----SSS-SS-S
T ss_pred cCCCCcCCcccHhhcccCHHHHhcCCcccCCCCCCccc
Confidence 345555555555544 34566677777654443
No 169
>PRK14873 primosome assembly protein PriA; Provisional
Probab=26.09 E-value=45 Score=42.38 Aligned_cols=11 Identities=27% Similarity=0.757 Sum_probs=7.0
Q ss_pred CCCCCCCcccc
Q 001576 78 SQCCPGCNTRY 88 (1050)
Q Consensus 78 ~~~CPqCkt~Y 88 (1050)
...||.|+...
T Consensus 422 p~~Cp~Cgs~~ 432 (665)
T PRK14873 422 DWRCPRCGSDR 432 (665)
T ss_pred CccCCCCcCCc
Confidence 45777776654
No 170
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=26.08 E-value=65 Score=37.13 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=28.0
Q ss_pred CCCCCEEEEecCCCCCChHHHHHHHhhhhcCcCCCccEEEEe
Q 001576 504 LTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQ 545 (1050)
Q Consensus 504 ~tngp~il~lDcD~~~~~~~~Lr~amcf~~Dp~~g~~v~~VQ 545 (1050)
.+..+||+++|.|++ |.+++-+....+..--....+.+||=
T Consensus 125 ~a~T~~v~~~DvD~~-ps~~l~~~l~~~~~~~~~~~~~a~Vv 165 (317)
T PF13896_consen 125 GARTDYVFLLDVDFL-PSPGLYEKLLRFARRNIDKSKTAFVV 165 (317)
T ss_pred hcCcceEEEecceee-eCcchHHHHHHHhhhhccCCceEEEE
Confidence 356799999999997 77776666666553222345777763
No 171
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=25.57 E-value=29 Score=30.77 Aligned_cols=28 Identities=39% Similarity=1.019 Sum_probs=20.2
Q ss_pred CCcccccCCcccccCCCCeeecccCCCCcc
Q 001576 36 SKLCRVCGDEIGLKENGELFVACHECGFPV 65 (1050)
Q Consensus 36 ~~~CqiCgd~vg~~~~G~~fvaC~eC~FpV 65 (1050)
--+|.-||.+-.+. .|+ .+-|.||||.|
T Consensus 20 iYiCgdC~~en~lk-~~D-~irCReCG~RI 47 (62)
T KOG3507|consen 20 IYICGDCGQENTLK-RGD-VIRCRECGYRI 47 (62)
T ss_pred EEEecccccccccc-CCC-cEehhhcchHH
Confidence 34888899885553 344 46899999976
No 172
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.54 E-value=8.6e+02 Score=28.27 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=37.6
Q ss_pred HHHHHhHhhhchhHHHHHhhccccc----------cc-cCCCCC-cccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhC
Q 001576 785 DRLHQVLRWALGSVEIFLSRHCPLW----------YG-YGGKLK-WLERLAYTNTIVYPFTSIPLLAYCTLPAICLLTG 851 (1050)
Q Consensus 785 ~~l~QR~RWA~G~lQil~~k~~Pl~----------~g-~~~~Ls-~~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G 851 (1050)
+.+++|-|=.++.=+.-..+++|-+ |. ....+. =.||+.|+...+|.+.++-++.-++.-+.+++-|
T Consensus 81 ~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~yylwm~~~~tL~~Niia~la~~i~g 159 (313)
T KOG3088|consen 81 QELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLWMGLVLTLLWNIIACLAWWIKG 159 (313)
T ss_pred HHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5667777776665444445566532 10 011122 1478888776666666666666666656566554
No 173
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=25.19 E-value=47 Score=30.48 Aligned_cols=30 Identities=37% Similarity=0.866 Sum_probs=23.7
Q ss_pred CCCcccccCC--ccc-ccCCCCeeecccCCCCc
Q 001576 35 GSKLCRVCGD--EIG-LKENGELFVACHECGFP 64 (1050)
Q Consensus 35 ~~~~CqiCgd--~vg-~~~~G~~fvaC~eC~Fp 64 (1050)
.|-+|.-|+. .|. ..+||...+-|-+|+|.
T Consensus 7 AGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 7 AGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred cCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 4668999984 444 46889999999999984
No 174
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.74 E-value=29 Score=35.31 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=8.4
Q ss_pred CCCCCCCCccc
Q 001576 77 GSQCCPGCNTR 87 (1050)
Q Consensus 77 G~~~CPqCkt~ 87 (1050)
..-.||.|+.+
T Consensus 106 ~~~~CP~Cgs~ 116 (135)
T PRK03824 106 AFLKCPKCGSR 116 (135)
T ss_pred cCcCCcCCCCC
Confidence 44569999976
No 175
>PRK04296 thymidine kinase; Provisional
Probab=24.37 E-value=37 Score=35.87 Aligned_cols=35 Identities=29% Similarity=0.583 Sum_probs=23.8
Q ss_pred CcccccCCccccc----------CCCCe-eecccCCCCccchhhhh
Q 001576 37 KLCRVCGDEIGLK----------ENGEL-FVACHECGFPVCRPCYE 71 (1050)
Q Consensus 37 ~~CqiCgd~vg~~----------~~G~~-fvaC~eC~FpVCR~Cye 71 (1050)
.+|..||.+--.| .+|+. .+.-.|=-.|+||.||.
T Consensus 141 ~vC~~Cg~~a~~~~r~~~~~~~~~~~~~~~ig~~e~Y~~~Cr~c~~ 186 (190)
T PRK04296 141 AICVHCGRKATMNQRLIDGGPAVYEGPQVLVGGNESYEAVCRKHYK 186 (190)
T ss_pred EEccccCCccceEEEEeCCCCccCCCCEEEECCcCcEEehhHHhhh
Confidence 3899999873332 23444 35555666899999994
No 176
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=24.22 E-value=26 Score=25.75 Aligned_cols=21 Identities=29% Similarity=0.873 Sum_probs=12.8
Q ss_pred chhhhhhhhhcCCCCCCCCccc
Q 001576 66 CRPCYEYERSEGSQCCPGCNTR 87 (1050)
Q Consensus 66 CR~CyeyerkeG~~~CPqCkt~ 87 (1050)
|..|-. +..++...||.|+++
T Consensus 5 Cp~Cg~-~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 5 CPNCGA-EIDPDAKFCPNCGAK 25 (26)
T ss_pred CcccCC-cCCcccccChhhCCC
Confidence 334433 346667788888765
No 177
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.17 E-value=40 Score=41.33 Aligned_cols=49 Identities=29% Similarity=0.680 Sum_probs=29.4
Q ss_pred ccCCCC-eeecccCCCCc-cchhhh---hhhhhcCCCCCCCCccccccccCccc
Q 001576 48 LKENGE-LFVACHECGFP-VCRPCY---EYERSEGSQCCPGCNTRYKRHKGCAR 96 (1050)
Q Consensus 48 ~~~~G~-~fvaC~eC~Fp-VCR~Cy---eyerkeG~~~CPqCkt~Ykr~kgspr 96 (1050)
++-+|- .++.|.+|+.. .|.-|= .|-++++.-.|..|+..++-..-||.
T Consensus 205 lnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~ 258 (505)
T TIGR00595 205 LNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQ 258 (505)
T ss_pred EeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCC
Confidence 344555 46778888765 366664 34455555667777766665555654
No 178
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=24.15 E-value=26 Score=25.26 Aligned_cols=13 Identities=31% Similarity=0.969 Sum_probs=6.8
Q ss_pred hcCCCCCCCCccc
Q 001576 75 SEGSQCCPGCNTR 87 (1050)
Q Consensus 75 keG~~~CPqCkt~ 87 (1050)
.++.+-||+|+++
T Consensus 10 ~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 10 EDDAKFCPNCGTP 22 (23)
T ss_pred CCcCcchhhhCCc
Confidence 4445555555554
No 179
>PRK12438 hypothetical protein; Provisional
Probab=24.13 E-value=1.4e+03 Score=30.96 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhh
Q 001576 983 GKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLLW 1028 (1050)
Q Consensus 983 ~~l~~~~Wvlvnl~PflkgL~gR~~~~P~~v~~~s~lla~~~~~l~ 1028 (1050)
++.+.++=+++...-|+.+++.|+-|.|.+.+..-++.+++...+|
T Consensus 259 a~~iL~~ia~i~Av~f~~~i~~r~~rlp~i~~~llv~~~iv~g~i~ 304 (991)
T PRK12438 259 AKLILVAIAVLCAVAFFAAIFLRDLRIPAMAAALLVLSAILVGGLW 304 (991)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556667777778999887766555555544444
No 180
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=24.12 E-value=35 Score=33.26 Aligned_cols=41 Identities=20% Similarity=0.511 Sum_probs=24.7
Q ss_pred ccccCCcccc-cCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCccccc
Q 001576 39 CRVCGDEIGL-KENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYK 89 (1050)
Q Consensus 39 CqiCgd~vg~-~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Yk 89 (1050)
|.+||...+. ...-+.|.=+ ...+.|-.|++ .||+|++.|=
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~-G~~~~v~~~~~---------~C~~CGe~~~ 42 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYK-GESITIGVPGW---------YCPACGEELL 42 (127)
T ss_pred CCCCCCccceeeeecceEEEc-CEEEEEeeeee---------ECCCCCCEEE
Confidence 8899965333 3333444444 34454544444 6999999883
No 181
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=24.12 E-value=4e+02 Score=28.71 Aligned_cols=25 Identities=8% Similarity=0.303 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhc
Q 001576 949 LIPPTTLIILNMVGVVAGVSDAINN 973 (1050)
Q Consensus 949 ~iP~~~Llilnlvaiv~Gi~r~i~~ 973 (1050)
++.-..|+++.+++++.|+...+..
T Consensus 81 ~~ld~~L~~~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 81 MALDNSLLFFGIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455567778888888888876644
No 182
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=24.05 E-value=51 Score=28.74 Aligned_cols=12 Identities=50% Similarity=0.963 Sum_probs=9.8
Q ss_pred cccccCCccccc
Q 001576 38 LCRVCGDEIGLK 49 (1050)
Q Consensus 38 ~CqiCgd~vg~~ 49 (1050)
.|..||.+|-++
T Consensus 4 ~CP~CG~~iev~ 15 (54)
T TIGR01206 4 ECPDCGAEIELE 15 (54)
T ss_pred CCCCCCCEEecC
Confidence 688899987775
No 183
>PF04641 Rtf2: Rtf2 RING-finger
Probab=23.85 E-value=64 Score=36.14 Aligned_cols=52 Identities=29% Similarity=0.591 Sum_probs=38.5
Q ss_pred CCCCcccccCCcccccCCCC-eeecccCCCCccchhhhhhhhhcCCCCCCCCccccccc
Q 001576 34 SGSKLCRVCGDEIGLKENGE-LFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~G~-~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 91 (1050)
...-+|.|++... +|. -||+=--||=-+|..|.+-- + ....||.|.++|+..
T Consensus 111 ~~~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCccc----CCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCccccC
Confidence 3444999998776 454 58887788878888888444 4 456799999999743
No 184
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=23.82 E-value=49 Score=26.29 Aligned_cols=31 Identities=26% Similarity=0.597 Sum_probs=22.9
Q ss_pred CCcccccCCcccccCCCCeeecccCCCCccchhhhhhh
Q 001576 36 SKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYE 73 (1050)
Q Consensus 36 ~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyeye 73 (1050)
...|..|++.. .-.-|.+|.-++|..|....
T Consensus 3 ~~~C~~H~~~~-------~~~~C~~C~~~~C~~C~~~~ 33 (42)
T PF00643_consen 3 EPKCPEHPEEP-------LSLFCEDCNEPLCSECTVSG 33 (42)
T ss_dssp SSB-SSTTTSB-------EEEEETTTTEEEEHHHHHTS
T ss_pred CccCccCCccc-------eEEEecCCCCccCccCCCCC
Confidence 45777777542 45779999999999999654
No 185
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.66 E-value=67 Score=29.70 Aligned_cols=48 Identities=23% Similarity=0.607 Sum_probs=32.3
Q ss_pred cccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCccccccc
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 91 (1050)
-|.-|+.++--+.+.-.+- =-||-| |.+|-|... + +.||.|+-..-+.
T Consensus 7 nCECCDrDLpp~s~dA~IC-tfEcTF--CadCae~~l--~-g~CPnCGGelv~R 54 (84)
T COG3813 7 NCECCDRDLPPDSTDARIC-TFECTF--CADCAENRL--H-GLCPNCGGELVAR 54 (84)
T ss_pred CCcccCCCCCCCCCceeEE-EEeeeh--hHhHHHHhh--c-CcCCCCCchhhcC
Confidence 5888998876654333322 237766 999986543 2 6899999877654
No 186
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=23.64 E-value=33 Score=37.27 Aligned_cols=26 Identities=46% Similarity=0.954 Sum_probs=19.9
Q ss_pred CCcccccCCccccc----CCCCeeecccCCCCccchhhhh
Q 001576 36 SKLCRVCGDEIGLK----ENGELFVACHECGFPVCRPCYE 71 (1050)
Q Consensus 36 ~~~CqiCgd~vg~~----~~G~~fvaC~eC~FpVCR~Cye 71 (1050)
.-+|..||+-++-. .||+ |||++||+
T Consensus 172 ~v~C~kCGE~~~e~~~~~~ng~----------~vC~~C~~ 201 (206)
T COG2191 172 SVRCSKCGELFMEPRAVVLNGK----------PVCKPCAE 201 (206)
T ss_pred eeeccccCcccccchhhhcCCc----------eecccccc
Confidence 35999999987654 3666 68999995
No 187
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=23.47 E-value=94 Score=26.27 Aligned_cols=45 Identities=31% Similarity=0.671 Sum_probs=28.3
Q ss_pred cccccCCcccccCCCCeeecccCCCC---ccchhhhhhhh-hcCCCCCCCCc
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGF---PVCRPCYEYER-SEGSQCCPGCN 85 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~F---pVCR~Cyeyer-keG~~~CPqCk 85 (1050)
+|.||-+ +-+++..++.|| .|.- -|=+.|.+.=. +.++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5899988 333444457778 5642 24467775444 34567899996
No 188
>PF15050 SCIMP: SCIMP protein
Probab=23.46 E-value=85 Score=31.65 Aligned_cols=40 Identities=23% Similarity=0.606 Sum_probs=28.0
Q ss_pred cccccchhHHHHHHHHHHHHH-----HHHHHHHhcCCCCCeeeCcC
Q 001576 890 DWWRNEQFWVIGGVSAHLFAV-----FQGLLKVLAGVDTNFTVTSK 930 (1050)
Q Consensus 890 ~wWr~e~~W~I~~vsa~lfAv-----~~aLlk~L~g~~~~F~VTpK 930 (1050)
+||| .-||+|.++.+.+..+ +-.+.+++.+...+++++.-
T Consensus 2 ~WWr-~nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkweiakp 46 (133)
T PF15050_consen 2 SWWR-DNFWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWEIAKP 46 (133)
T ss_pred chHH-hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccceeccc
Confidence 5898 4799998876555443 23345677778889988864
No 189
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=23.15 E-value=5.1e+02 Score=28.85 Aligned_cols=60 Identities=18% Similarity=0.410 Sum_probs=44.8
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhhHhhHHHHHHhhhhhhhhhhccC
Q 001576 309 VFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYII 377 (1050)
Q Consensus 309 vfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~a~fA~~WvPFCkk~~i 377 (1050)
|+|+|-+ ..|-|+-.|+-.+++-.++.+.+.+.=-.||...+...-| + -.++ -||+.|+.
T Consensus 4 iLlatlG---~sPqVVTETL~aL~~~g~~p~EV~vitT~~~~~~~~~~ll-~-g~~~----~l~~~y~~ 63 (224)
T PF09623_consen 4 ILLATLG---TSPQVVTETLYALAQQGEIPDEVHVITTRDGAVRAALRLL-D-GGLQ----RLCQDYYL 63 (224)
T ss_pred EEEEecC---CCchHHHHHHHHHHcCCCCCCEEEEEECCChHHHHHHHHH-H-HHHH----HHHHhhcC
Confidence 7899988 7789999999999999998898888888888777533333 0 0122 37887764
No 190
>PRK08359 transcription factor; Validated
Probab=23.07 E-value=33 Score=36.62 Aligned_cols=31 Identities=39% Similarity=0.914 Sum_probs=19.9
Q ss_pred CCcccccCCccccc-----CCCCeeecccCCCCccchhhh-hhhh
Q 001576 36 SKLCRVCGDEIGLK-----ENGELFVACHECGFPVCRPCY-EYER 74 (1050)
Q Consensus 36 ~~~CqiCgd~vg~~-----~~G~~fvaC~eC~FpVCR~Cy-eyer 74 (1050)
.-.|.|||.+|--. .+|-. .-||..|| .|-.
T Consensus 6 ~~~CEiCG~~i~g~~~~v~ieGae--------l~VC~~Ca~k~G~ 42 (176)
T PRK08359 6 PRYCEICGAEIRGPGHRIRIEGAE--------LLVCDRCYEKYGR 42 (176)
T ss_pred cceeecCCCccCCCCeEEEEcCeE--------EehHHHHHHHhCC
Confidence 34599999997422 23433 45778888 6654
No 191
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.92 E-value=48 Score=44.46 Aligned_cols=48 Identities=27% Similarity=0.659 Sum_probs=30.6
Q ss_pred CcccccCCcccccCCCCeeecccCCCCcc-----chhhhhh-h-hhcCCCCCCCCccccccc
Q 001576 37 KLCRVCGDEIGLKENGELFVACHECGFPV-----CRPCYEY-E-RSEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 37 ~~CqiCgd~vg~~~~G~~fvaC~eC~FpV-----CR~Cyey-e-rkeG~~~CPqCkt~Ykr~ 91 (1050)
..|.-||..+-. .-|.+|+-+. |..|=-. + -..+...||.|+++-...
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 368888876422 2788887664 7777531 1 112356899999887654
No 192
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.62 E-value=35 Score=30.54 Aligned_cols=17 Identities=47% Similarity=1.007 Sum_probs=15.0
Q ss_pred hhcCCCCCCCCcccccc
Q 001576 74 RSEGSQCCPGCNTRYKR 90 (1050)
Q Consensus 74 rkeG~~~CPqCkt~Ykr 90 (1050)
.++|.-.||=|.|+|+-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 57899999999999974
No 193
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=22.46 E-value=56 Score=39.02 Aligned_cols=35 Identities=23% Similarity=0.526 Sum_probs=23.4
Q ss_pred eeecccCCCCccchhhhhhhhh-cCCCCCCCCcccccccc
Q 001576 54 LFVACHECGFPVCRPCYEYERS-EGSQCCPGCNTRYKRHK 92 (1050)
Q Consensus 54 ~fvaC~eC~FpVCR~Cyeyerk-eG~~~CPqCkt~Ykr~k 92 (1050)
..++|+||+--+=+| ..+ .+.-.||+|++..-|++
T Consensus 12 ~~~~C~~Cd~l~~~~----~l~~g~~a~CpRCg~~L~~~~ 47 (403)
T TIGR00155 12 KHILCSQCDMLVALP----RIESGQKAACPRCGTTLTVGW 47 (403)
T ss_pred CeeeCCCCCCccccc----CCCCCCeeECCCCCCCCcCCC
Confidence 467899998764333 122 23357999999987653
No 194
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=22.41 E-value=56 Score=42.71 Aligned_cols=54 Identities=22% Similarity=0.436 Sum_probs=31.2
Q ss_pred CCCcccccCCc--ccccC-CCCeeecccCCCCccchhhhhhhh-----------hcCCCCCCCCccccccc
Q 001576 35 GSKLCRVCGDE--IGLKE-NGELFVACHECGFPVCRPCYEYER-----------SEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 35 ~~~~CqiCgd~--vg~~~-~G~~fvaC~eC~FpVCR~Cyeyer-----------keG~~~CPqCkt~Ykr~ 91 (1050)
....|..||.. +.... .| .|++|. +||-|+-=....+ ......||.|+.++...
T Consensus 591 ~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK 658 (860)
T PRK06319 591 TEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVR 658 (860)
T ss_pred cCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEe
Confidence 45689999864 22223 45 699994 5777742111111 11246899998666543
No 195
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=22.17 E-value=48 Score=27.96 Aligned_cols=38 Identities=24% Similarity=0.549 Sum_probs=29.9
Q ss_pred CCcccccCCcccccCCCCeeecccCCCCccchhhhhhhhhc
Q 001576 36 SKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSE 76 (1050)
Q Consensus 36 ~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyeyerke 76 (1050)
.+.|.+|+...+...+ -.-|.-|+--+|..|..+....
T Consensus 2 ~~~C~~C~~~F~~~~r---k~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 2 ASSCMGCGKPFTLTRR---RHHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred cCcCcccCccccCCcc---ccccCcCcCCcChHHcCCeeec
Confidence 4689999998887433 2678999999999999877553
No 196
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=21.78 E-value=1.6e+03 Score=31.64 Aligned_cols=16 Identities=38% Similarity=0.723 Sum_probs=12.0
Q ss_pred cEEEEcCCCCchhhhH
Q 001576 341 VSCYVSDDGASMLLFD 356 (1050)
Q Consensus 341 l~~yvsDDG~~~ltf~ 356 (1050)
+.|.+=+.|++.|..+
T Consensus 1779 iQc~LdkeGAs~LV~d 1794 (2706)
T KOG3533|consen 1779 IQCKLDKEGASDLVTD 1794 (2706)
T ss_pred HHhhccccchhhhhHH
Confidence 4688888899887553
No 197
>PTZ00293 thymidine kinase; Provisional
Probab=21.68 E-value=43 Score=36.66 Aligned_cols=35 Identities=20% Similarity=0.717 Sum_probs=22.5
Q ss_pred CcccccCCccccc----CCCCe-eecccCCCCccchhhhh
Q 001576 37 KLCRVCGDEIGLK----ENGEL-FVACHECGFPVCRPCYE 71 (1050)
Q Consensus 37 ~~CqiCgd~vg~~----~~G~~-fvaC~eC~FpVCR~Cye 71 (1050)
.+|..||.+--.+ ++|+. .+.=+|=--++||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 5999999884332 34443 23333445789999995
No 198
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.39 E-value=47 Score=35.45 Aligned_cols=44 Identities=25% Similarity=0.644 Sum_probs=35.4
Q ss_pred CCCcccccCCcccccCCCCeeecccCCCCccchhhhhhhhhcCCCCCCCCcc
Q 001576 35 GSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNT 86 (1050)
Q Consensus 35 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt 86 (1050)
.-..|.||-+..-.. ....|+--.|+.|-+.-.. +.-.||.|+.
T Consensus 12 ~~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 345899999885443 5657899999999988777 8799999994
No 199
>PF12773 DZR: Double zinc ribbon
Probab=21.07 E-value=70 Score=26.46 Aligned_cols=12 Identities=33% Similarity=0.935 Sum_probs=6.9
Q ss_pred CCcccccCCccc
Q 001576 36 SKLCRVCGDEIG 47 (1050)
Q Consensus 36 ~~~CqiCgd~vg 47 (1050)
...|..||-.+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 346666666655
No 200
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.97 E-value=35 Score=26.77 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=7.2
Q ss_pred CCCCCCCcccc
Q 001576 78 SQCCPGCNTRY 88 (1050)
Q Consensus 78 ~~~CPqCkt~Y 88 (1050)
-..||-|+.+-
T Consensus 18 p~~CP~Cg~~~ 28 (34)
T cd00729 18 PEKCPICGAPK 28 (34)
T ss_pred CCcCcCCCCch
Confidence 35788887653
No 201
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=20.41 E-value=64 Score=36.13 Aligned_cols=58 Identities=26% Similarity=0.492 Sum_probs=43.1
Q ss_pred CCcccccCCcccccCCCCeeecccCC-CCcc--chhhhhhhhh-cCCCCCCCCccccccccCc
Q 001576 36 SKLCRVCGDEIGLKENGELFVACHEC-GFPV--CRPCYEYERS-EGSQCCPGCNTRYKRHKGC 94 (1050)
Q Consensus 36 ~~~CqiCgd~vg~~~~G~~fvaC~eC-~FpV--CR~Cyeyerk-eG~~~CPqCkt~Ykr~kgs 94 (1050)
+..|.||-++..-...+.+-++| .| +.+. =|.|.+-..+ -|+-.|..|+..|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC-~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~ 139 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPC-SCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTK 139 (323)
T ss_pred CCcEEEEecccccccccccccCc-cccCcHHHHHHHHHHhhhccccCeeeecccccceeccee
Confidence 46899999987655434678889 77 2322 5889988766 5779999999999887444
No 202
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=20.32 E-value=52 Score=39.53 Aligned_cols=33 Identities=24% Similarity=0.625 Sum_probs=22.6
Q ss_pred ecccCCCCccchhhhhhhhhcCCCCCCCCccccccc
Q 001576 56 VACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 56 vaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 91 (1050)
++|++|+--+..|=- +..+...||+|+++..|+
T Consensus 11 ~~C~~Cd~l~~~~~l---~~g~~a~CpRCg~~L~~~ 43 (419)
T PRK15103 11 ILCPQCDMLVALPRL---EHGQKAACPRCGTTLTVR 43 (419)
T ss_pred ccCCCCCceeecCCC---CCCCeeECCCCCCCCcCC
Confidence 789999887654421 122235799999998765
No 203
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=20.31 E-value=1.8e+03 Score=27.81 Aligned_cols=72 Identities=25% Similarity=0.285 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhHhcCCCCCcc---------hHHHHHHHHHHHHHHHHHHHHHhcCCC-------CCcchHHHHHH
Q 001576 955 LIILNMVGVVAGVSDAINNGYGSWGP---------LFGKLFFAFWVIVHLYPFLKGLMGRQN-------RTPTIVVLWSV 1018 (1050)
Q Consensus 955 Llilnlvaiv~Gi~r~i~~~~~~w~~---------l~~~l~~~~Wvlvnl~PflkgL~gR~~-------~~P~~v~~~s~ 1018 (1050)
-++..+++-+.++.+.+.+....-+. .+...++..|++.-|---++.|--|++ |.=+++++.|+
T Consensus 313 g~~~~i~s~i~~l~~~~g~~se~~~~~~lf~~ip~ai~d~~f~~wIF~SL~~Tlk~Lr~rRn~vKl~lYr~F~n~l~~~V 392 (518)
T KOG2568|consen 313 GVIYFIASEILGLARVIGNISELSSLLILFAALPLAILDAAFIYWIFISLAKTLKKLRLRRNIVKLSLYRKFTNTLAFSV 392 (518)
T ss_pred hHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666665332221121 123455666776666666777766664 66677777776
Q ss_pred HHHHHHHh
Q 001576 1019 LLASIFSL 1026 (1050)
Q Consensus 1019 lla~~~~~ 1026 (1050)
+....|++
T Consensus 393 vas~~~i~ 400 (518)
T KOG2568|consen 393 VASFAFIL 400 (518)
T ss_pred HHHHHHHH
Confidence 55555544
No 204
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=20.01 E-value=2.3e+02 Score=33.58 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=27.9
Q ss_pred CCCccchhhHHHHhhccCCCCCEEEEecCCCCCChHHHHHHHh
Q 001576 487 HHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAM 529 (1050)
Q Consensus 487 hh~KAGalNallrvSav~tngp~il~lDcD~~~~~~~~Lr~am 529 (1050)
.+.|+-.|=-.+-... ..+..||-.+|||.|+| -++.|-.
T Consensus 141 R~GKgEGMiiG~lLAk-~~g~~YVGFiDaDNyiP--GaV~EYv 180 (381)
T TIGR02460 141 RSGKGEGMLLGLLLAK-AIGAEYVGFVDADNYFP--GAVNEYV 180 (381)
T ss_pred ecCcchHHHHHHHHHH-HhCCceEeEeecccCCC--chHHHHH
Confidence 4568888775333222 45899999999999985 5666644
Done!