Query 001576
Match_columns 1050
No_of_seqs 355 out of 1820
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 17:12:52 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001576.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_873-876//hhsearch_pdb/001576hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 1.0 1 1 455.9 47.5 491 227-1003 65-571 (802)
2 1weo_A Cellulose synthase, cat 1.0 1 1 301.3 8.1 84 28-111 8-91 (93)
3 2z86_A Chondroitin synthase; G 1.0 1 1 130.8 15.7 129 301-554 89-218 (625)
4 1xhb_A Polypeptide N-acetylgal 1.0 1 1 120.1 14.8 122 300-544 24-148 (472)
5 2ffu_A Ppgalnact-2, polypeptid 1.0 1 1 117.0 11.0 113 301-535 62-174 (501)
6 2d7i_A Polypeptide N-acetylgal 1.0 1 1 116.4 15.0 116 301-535 108-224 (570)
7 2z86_A Chondroitin synthase; G 1.0 1 1 110.0 11.4 125 302-553 372-497 (625)
8 1qg8_A Protein (spore coat pol 1.0 1 1 107.6 4.7 124 305-551 1-129 (255)
9 3l7i_A Teichoic acid biosynthe 1.0 1 1 102.2 0.0 118 304-546 1-118 (729)
10 3bcv_A Putative glycosyltransf 1.0 1 1 102.0 11.3 110 303-535 3-112 (240)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=455.93 Aligned_cols=491 Identities=24% Similarity=0.350 Sum_probs=376.5
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 58-9999999999999998821468884-----25799999999999999998310324535664124445553302799
Q 001576 227 YR-IVIILRLFILAFFLRFRILTPAYDA-----FPLWIISVICEVWFAFSWILDQFPKWFPITRETYLDRLSIRFEREGE 300 (1050)
Q Consensus 227 ~R-~~i~~~l~~l~~yl~wRi~~~~~~~-----~~lWl~~~i~E~~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~~~~~~ 300 (1050)
.| +++++.+++.+.|++||++.+++.. +++|++++++|+++.+.|++..+..|.|..|...++. .
T Consensus 65 ~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~---------~ 135 (802)
T 4hg6_A 65 PRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL---------Q 135 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC---------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---------C
T ss_conf 5789999999999999999866006775305899999999999999999999999998365678888989---------8
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99998806998048999999799999999988397999984799917998424457667899996321123341157889
Q 001576 301 PNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPR 380 (1050)
Q Consensus 301 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpFCkk~~iepR 380 (1050)
++++|.|+|+||||| |++.++.+|+.|++++|||.+++.++|.|||.++-|.+.
T Consensus 136 ~~~~P~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~----------------------- 189 (802)
T 4hg6_A 136 PEELPTVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS----------------------- 189 (802)
T ss_dssp TTTCCCEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC-----------------------
T ss_pred CCCCCCEEEEEEECC---CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC-----------------------
T ss_conf 567984899999799---989999999999984669998289999989987642234-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 93110123333234878703599999999999999999999886410798444334689989999988990257756057
Q 001576 381 APEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGS 460 (1050)
Q Consensus 381 ~Pe~yF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~~ 460 (1050)
..|+.+++.... ++ .++.+.++
T Consensus 190 ----------------~d~~i~~~~~~~---~~----~l~~~~~~----------------------------------- 211 (802)
T 4hg6_A 190 ----------------PDPELAQKAQER---RR----ELQQLCRE----------------------------------- 211 (802)
T ss_dssp ----------------SSHHHHHHHHHH---HH----HHHHHHHH-----------------------------------
T ss_pred ----------------CCHHHHHHHHHH---HH----HHHHHHHH-----------------------------------
T ss_conf ----------------887899998866---69----99999985-----------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH-CCCCCCC
Q ss_conf 898665588778089994567999997875101158887502678998999954999889289999995411-2767996
Q 001576 461 EGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGK 539 (1050)
Q Consensus 461 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~nn~~~lr~amcff-~Dp~~g~ 539 (1050)
.++.|+.|++ +++.||||+|.+++. ++++||+.+|||+. ..|++|++.+.+| .||
T Consensus 212 -----------~~v~~i~~~~----~~~GKa~alN~gl~~----a~gd~Il~lDaD~~-~~pd~L~~lv~~~~~dp---- 267 (802)
T 4hg6_A 212 -----------LGVVYSTRER----NEHAKAGNMSAALER----LKGELVVVFDADHV-PSRDFLARTVGYFVEDP---- 267 (802)
T ss_dssp -----------HTCEEEECSS----CCSHHHHHHHHHHHH----CCCSEEEECCTTEE-ECTTHHHHHHHHHHHSS----
T ss_pred -----------CCCEEEEECC----CCCCCHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHCCC----
T ss_conf -----------6947999268----877636899999996----59999999999988-18589999999984099----
Q ss_pred CEEEEECCCCCCCCCC-------CCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCEEHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 2899812730169997-------773310135788754034447888301046830013321189999777798887899
Q 001576 540 KLCYVQFPQRFDGIDR-------HDRYANRNIVFFDINMLGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDC 612 (1050)
Q Consensus 540 ~vafVQ~PQ~F~nid~-------~D~y~n~~~vFfdi~~~glDg~qgp~yvGTgc~fRR~ALyg~~p~~~~~~~~~~~~~ 612 (1050)
+++.||+|+.+.|.++ .+++.+++..|+.....+.+.+++++++|+++++||+++.
T Consensus 268 ~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~----------------- 330 (802)
T 4hg6_A 268 DLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALD----------------- 330 (802)
T ss_dssp SCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHH-----------------
T ss_pred CEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHH-----------------
T ss_conf 859996567976785576544477651678999988887547643884542664032499999-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99887545799865566556897765443013322103544334799985534676520245035655443344555431
Q 001576 613 WPSWCCCCCGGSRKSKSKKKGDKRGFFSGLYTKKKKMMGKNYVRKGSAPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKR 692 (1050)
Q Consensus 613 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 692 (1050)
T Consensus 331 -------------------------------------------------------------------------------- 330 (802)
T 4hg6_A 331 -------------------------------------------------------------------------------- 330 (802)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 48825888544332099999988426899998842145332354343125021543422999999974892999966898
Q 001576 693 FGQSPVFIASTLKEDGGLPEGTNSTSLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWKSVYCVPKR 772 (1050)
Q Consensus 693 fG~s~~f~~s~l~e~GG~p~~~~~~~~~~eA~~v~sc~YE~~T~WG~evGw~ygsITEDi~Ts~rLh~rGWkSvY~~p~~ 772 (1050)
+.||+++ ++++||.+++++++.+||+++|+++..
T Consensus 331 -------------~vGgf~~---------------------------------~~~~ED~~l~~rl~~~G~ri~~~~~~~ 364 (802)
T 4hg6_A 331 -------------EAGGFAG---------------------------------ETITEDAETALEIHSRGWKSLYIDRAM 364 (802)
T ss_dssp -------------HHTTCCC---------------------------------SSSSHHHHHHHHHHTTTCCEEECCCCC
T ss_pred -------------HCCCCCC---------------------------------CCCCHHHHHHHHHHHCCCEEEEECCCE
T ss_conf -------------7088678---------------------------------880309999999997699599936887
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 64336679898999988676530017888740464311348887701002434345555567999999999999999178
Q 001576 773 PAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTLPAICLLTGK 852 (1050)
Q Consensus 773 ~af~G~aP~tl~~~l~QR~RWA~G~iQIllsk~~Pl~~g~~~~L~~~QRL~Yl~~~ly~l~si~~liylllPil~LltGi 852 (1050)
.++.+|+++.++++||.||++|.+|+++. ++|++ .+++++.||++|+...++|+.+++.++++++|++++++++
T Consensus 365 --~~~~~p~t~~~~~~Qr~RW~~G~~q~l~~-~~pl~---~~~l~~~~rl~~l~~~~~~~~~~~~li~ll~p~~~ll~~~ 438 (802)
T 4hg6_A 365 --IAGLQPETFASFIQQRGRWATGMMQMLLL-KNPLF---RRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGI 438 (802)
T ss_dssp --EEECCCCSHHHHHHHHHHHHHHHHHHHHH-SCTTS---CSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCC
T ss_pred --EEECCCCCHHHHHHHHHHHHCCHHHHHHH-HCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --99668889999999999997008999988-59234---6899899999999999999999999999999999999967
Q ss_pred CCHHCCCHHHHHHHH-HHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCEEECCC
Q ss_conf 521123068999999-999999999875402237533111133225777788889999999999-986298877063769
Q 001576 853 FIIPTLNNLASIWFL-ALFLSIIVTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLL-KVLAGVDTNFTVTSK 930 (1050)
Q Consensus 853 ~iip~vs~~~~l~fi-~lfls~~~~~lLe~~w~G~si~~wWr~eq~W~I~~vsa~lfAv~~all-k~Lgg~~~~F~VTpK 930 (1050)
.++......++.+++ ++++...+...+. .... ..|| ++.++.+.+. ..+.+++ ..+++++.+|.||+|
T Consensus 439 ~~~~~~~~~~~~~~lp~~l~~~~~~~~~~---~~~r-~~~~-~~l~~~~~~~-----~~~~a~l~~l~~~~~~~f~VT~K 508 (802)
T 4hg6_A 439 EIFVATFEEVLAYMPGYLAVSFLVQNALF---ARQR-WPLV-SEVYEVAQAP-----YLARAIVTTLLRPRSARFAVTAK 508 (802)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHHHHHHH---TTTS-CTTH-HHHHHHHHHH-----HHHHHHHHHHHSTTCCCCCCCCC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHH---CCCH-HHHH-HHHHHHHHHH-----HHHHHHHHHHHCCCCCCCEECCC
T ss_conf 87633899999999999999999999995---6747-9999-9999999999-----99999999991888982027799
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9865323321430343103689999999999999998875715999886147989999999997999998871
Q 001576 931 SAEDEEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLM 1003 (1050)
Q Consensus 931 g~~~~~~~~ly~f~ws~l~iP~~~Llilnlvaiv~Gi~r~~~~~~~~w~~l~g~lv~~~Wvi~~l~Pfl~gL~ 1003 (1050)
+...+.. +-+ .+++|++++++++++++++|+++..... .+..+.+++++|+++|++.+.-++.
T Consensus 509 g~~~~~~-----~~~-~~~~p~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~w~~~~l~~l~~~~~ 571 (802)
T 4hg6_A 509 DETLSEN-----YIS-PIYRPLLFTFLLCLSGVLATLVRWVAFP----GDRSVLLVVGGWAVLNVLLVGFALR 571 (802)
T ss_dssp CCCCSSC-----CBC-TTCHHHHHHHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCC-----CHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7656653-----122-6899999999999999999999996067----7634200115999999999999999
No 2
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=1.00 E-value=1 Score=301.35 Aligned_cols=84 Identities=55% Similarity=1.172 Sum_probs=81.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99888779875554487643457998021046889861201156466218987888852222446865447997777875
Q 001576 28 RPPTRQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRHKGCARVAGDEEDNFDD 107 (1050)
Q Consensus 28 ~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~ee~~~d 107 (1050)
+|||+++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+|||||||||||||||||+|||+|+++|
T Consensus 8 ~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GDe~e~d~d 87 (93)
T 1weo_A 8 PKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEEDID 87 (93)
T ss_dssp SSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCCCCCSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87520058872611457435477898887630067735188999998526740554587622336888766664446533
Q ss_pred CCHH
Q ss_conf 2022
Q 001576 108 DFED 111 (1050)
Q Consensus 108 d~~~ 111 (1050)
|+++
T Consensus 88 D~~~ 91 (93)
T 1weo_A 88 SGPS 91 (93)
T ss_dssp CCCS
T ss_pred CCCC
T ss_conf 2445
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=130.78 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=99.3
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99998806998048999999799999999988397999984799917998424457667899996321123341157889
Q 001576 301 PNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPR 380 (1050)
Q Consensus 301 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpFCkk~~iepR 380 (1050)
+...|.|+|+|+|+| |+ ..+..|+.|+++.+||. .+.++|.|||.++- +.+.++
T Consensus 89 ~~~~p~vsviIp~~n---~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~-------t~~~~~-------------- 142 (625)
T 2z86_A 89 QLIIDGLSIVIPTYN---RA-KILAITLACLCNQKTIY-DYEVIVADDGSKEN-------IEEIVR-------------- 142 (625)
T ss_dssp -CCCCCEEEEEEESS---CH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSC-------HHHHHH--------------
T ss_pred CCCCCCEEEEEECCC---CH-HHHHHHHHHHHHHCCCC-CEEEEEEECCCCHH-------HHHHHH--------------
T ss_conf 346982799990388---57-88999999998436579-86999996798320-------799999--------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 93110123333234878703599999999999999999999886410798444334689989999988990257756057
Q 001576 381 APEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGS 460 (1050)
Q Consensus 381 ~Pe~yF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~~ 460 (1050)
+..
T Consensus 143 --------------------------------------------~~~--------------------------------- 145 (625)
T 2z86_A 143 --------------------------------------------EFE--------------------------------- 145 (625)
T ss_dssp --------------------------------------------TTT---------------------------------
T ss_pred --------------------------------------------HHH---------------------------------
T ss_conf --------------------------------------------856---------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHC-CCCCCC
Q ss_conf 8986655887780899945679999978751011588875026789989999549998892899999954112-767996
Q 001576 461 EGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLM-DPQLGK 539 (1050)
Q Consensus 461 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~nn~~~lr~amcff~-Dp~~g~ 539 (1050)
.-+++.|+.+++ +.+.||+|+|.+++. +.|+||+.+|+|+. ..|++|.+.+-.|. +|
T Consensus 146 ---------~~~~i~~i~~~~----~~~g~~~a~N~g~~~----a~g~~v~~lD~D~~-~~~~~l~~~~~~~~~~~---- 203 (625)
T 2z86_A 146 ---------SLLNIKYVRQKD----YGYQLCAVRNLGLRA----AKYNYVAILDCDMA-PNPLWVQSYMELLAVDD---- 203 (625)
T ss_dssp ---------TTSCEEEEEECC----CSCCHHHHHHHHHHH----CCSSEEEEECTTEE-ECTTHHHHHHHHHHHCT----
T ss_pred ---------HCCCEEEEEECC----CCCCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHCCC----
T ss_conf ---------317829998678----774306899999986----88478999789877-79799999999985598----
Q ss_pred CEEEEECCCCCCCCC
Q ss_conf 289981273016999
Q 001576 540 KLCYVQFPQRFDGID 554 (1050)
Q Consensus 540 ~vafVQ~PQ~F~nid 554 (1050)
+++.|+..+.+.+..
T Consensus 204 ~~~~~g~~~~~~~~~ 218 (625)
T 2z86_A 204 NVALIGPRKYIDTSK 218 (625)
T ss_dssp TEEEECCEEEECCTT
T ss_pred CEEEEEEEEECCCCC
T ss_conf 639998556516742
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=1.00 E-value=1 Score=120.06 Aligned_cols=122 Identities=17% Similarity=0.098 Sum_probs=93.4
Q ss_pred CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999998806998048999999799999999988397999984799917998424-4576678999963211233411578
Q 001576 300 EPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASML-LFDALSETAEFARRWVPFCKKYIIE 378 (1050)
Q Consensus 300 ~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~l-tf~al~E~~~fA~~WvpFCkk~~ie 378 (1050)
.+..+|.|.|.|+||| |+...+..||.|+++.+||.....+.|.|||..+- |.+.+.+
T Consensus 24 ~~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~------------------ 82 (472)
T 1xhb_A 24 YPDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLES------------------ 82 (472)
T ss_dssp CCSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHH------------------
T ss_pred CCCCCCCEEEEEEECC---CCHHHHHHHHHHHHHCCCHHHCEEEEEEECCCCCHHHHHHHHH------------------
T ss_conf 7867997599999678---8789999999999865957676079999779996789999999------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 89931101233332348787035999999999999999999998864107984443346899899999889902577560
Q 001576 379 PRAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYL 458 (1050)
Q Consensus 379 pR~Pe~yF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l 458 (1050)
+.+
T Consensus 83 -------------------------------------------~~~---------------------------------- 85 (472)
T 1xhb_A 83 -------------------------------------------YVK---------------------------------- 85 (472)
T ss_dssp -------------------------------------------HHH----------------------------------
T ss_pred -------------------------------------------HHH----------------------------------
T ss_conf -------------------------------------------998----------------------------------
Q ss_pred CCCCCCCCCCCCCC-CEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHC-CCC
Q ss_conf 57898665588778-0899945679999978751011588875026789989999549998892899999954112-767
Q 001576 459 GSEGALDVEGKELP-RLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLM-DPQ 536 (1050)
Q Consensus 459 ~~~g~~d~~~~~lP-~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~nn~~~lr~amcff~-Dp~ 536 (1050)
.+| ++.++..+++. .+++|+|.+++. +.|+||+.+|+|.. ..|++|.+.+-.+. +|
T Consensus 86 -----------~~~~~v~vi~~~~n~-----G~~~a~N~g~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~~- 143 (472)
T 1xhb_A 86 -----------KLKVPVHVIRMEQRS-----GLIRARLKGAAV----SRGQVITFLDAHCE-CTAGWLEPLLARIKHDR- 143 (472)
T ss_dssp -----------SSSSCEEEEECSSCC-----CHHHHHHHHHHH----CCSSEEEEEESSEE-ECTTCHHHHHHHHHHCT-
T ss_pred -----------HCCCCEEEEECCCCC-----CHHHHHHHHHHH----CCCCEEEEECCCEE-ECCCHHHHHHHHHHHCC-
T ss_conf -----------779857999889878-----769999999986----15876999889857-67347999999998399-
Q ss_pred CCCCEEEE
Q ss_conf 99628998
Q 001576 537 LGKKLCYV 544 (1050)
Q Consensus 537 ~g~~vafV 544 (1050)
.++.+
T Consensus 144 ---~~~v~ 148 (472)
T 1xhb_A 144 ---RTVVC 148 (472)
T ss_dssp ---TEEEE
T ss_pred ---CEEEE
T ss_conf ---77999
No 5
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=1.00 E-value=1 Score=117.00 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=89.4
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99998806998048999999799999999988397999984799917998424457667899996321123341157889
Q 001576 301 PNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPR 380 (1050)
Q Consensus 301 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpFCkk~~iepR 380 (1050)
+..+|.|.|.||||| |+...+..||.|+++..||.....+.|.|||..+-|.+
T Consensus 62 ~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~------------------------ 114 (501)
T 2ffu_A 62 RVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDG------------------------ 114 (501)
T ss_dssp CSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHH------------------------
T ss_pred CCCCCCEEEEEEECC---CCHHHHHHHHHHHHHHCCHHHCEEEEEEECCCCCHHHH------------------------
T ss_conf 867997799999696---86899999999998508663351499997899956789------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 93110123333234878703599999999999999999999886410798444334689989999988990257756057
Q 001576 381 APEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGS 460 (1050)
Q Consensus 381 ~Pe~yF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~~ 460 (1050)
+ +.
T Consensus 115 ---------------------------------~-------~~------------------------------------- 117 (501)
T 2ffu_A 115 ---------------------------------A-------LL------------------------------------- 117 (501)
T ss_dssp ---------------------------------H-------GG-------------------------------------
T ss_pred ---------------------------------H-------HH-------------------------------------
T ss_conf ---------------------------------9-------98-------------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 898665588778089994567999997875101158887502678998999954999889289999995411276
Q 001576 461 EGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDP 535 (1050)
Q Consensus 461 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~nn~~~lr~amcff~Dp 535 (1050)
...|++.|+..+++ ..+++|+|.+++. +.|+||+.+|+|.. ..|++|.+.+-.+.+.
T Consensus 118 --------~~~~~v~vi~~~~n-----~G~~~A~N~G~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~ 174 (501)
T 2ffu_A 118 --------GKIEKVRVLRNDRR-----EGLMRSRVRGADA----AQAKVLTFLDSHCE-CNEHWLEPLLERVAED 174 (501)
T ss_dssp --------GGBTTEEEEECSSC-----CHHHHHHHHHHHH----CCSSEEEECCSSEE-ECTTCHHHHHHHHHHC
T ss_pred --------HCCCCEEEEECCCC-----CCHHHHHHHHHHH----CCCCEEEEECCCCC-CCCCHHHHHHHHHHHC
T ss_conf --------41898799989988-----6889999998986----68988999779830-6720799999999839
No 6
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=1.00 E-value=1 Score=116.41 Aligned_cols=116 Identities=16% Similarity=0.064 Sum_probs=90.5
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHH-HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999988069980489999997999999999883979999847999179984244-5766789999632112334115788
Q 001576 301 PNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLL-FDALSETAEFARRWVPFCKKYIIEP 379 (1050)
Q Consensus 301 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt-f~al~E~~~fA~~WvpFCkk~~iep 379 (1050)
++.+|.|.|.||||| |+...+..||.|+++..||...+.+.|.|||..+-| .+.+.+
T Consensus 108 ~~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~------------------- 165 (570)
T 2d7i_A 108 LETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLED------------------- 165 (570)
T ss_dssp ESSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHH-------------------
T ss_pred CCCCCCEEEEEEECC---CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH-------------------
T ss_conf 888997599999789---8789999999999835874576799999899983788999999-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 99311012333323487870359999999999999999999988641079844433468998999998899025775605
Q 001576 380 RAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLG 459 (1050)
Q Consensus 380 R~Pe~yF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~ 459 (1050)
+.+
T Consensus 166 ------------------------------------------~~~----------------------------------- 168 (570)
T 2d7i_A 166 ------------------------------------------YMA----------------------------------- 168 (570)
T ss_dssp ------------------------------------------HHT-----------------------------------
T ss_pred ------------------------------------------HHH-----------------------------------
T ss_conf ------------------------------------------997-----------------------------------
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 7898665588778089994567999997875101158887502678998999954999889289999995411276
Q 001576 460 SEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDP 535 (1050)
Q Consensus 460 ~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~nn~~~lr~amcff~Dp 535 (1050)
..|++.++..+++ ..+++|+|.+++. +.|+||+.||+|..+ .|++|.+.+-.+.+.
T Consensus 169 ----------~~~~v~vi~~~~n-----~G~~~A~N~G~~~----A~gd~i~fLD~D~~~-~p~~L~~ll~~l~~~ 224 (570)
T 2d7i_A 169 ----------LFPSVRILRTKKR-----EGLIRTRMLGASV----ATGDVITFLDSHCEA-NVNWLPPLLDRIARN 224 (570)
T ss_dssp ----------TSTTEEEEECSSC-----CCHHHHHHHHHHH----CCSSEEEECCSSEEE-CTTCSHHHHHHHHHC
T ss_pred ----------HCCEEEEEECCCC-----CCHHHHHHHHHHH----CCCCEEEEECCCCCC-CCCHHHHHHHHHHHC
T ss_conf ----------4780899989988-----7989999999986----678889997598522-403899999999848
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=110.00 Aligned_cols=125 Identities=22% Similarity=0.285 Sum_probs=93.0
Q ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99988069980489999997999999999883979999847999179984244576678999963211233411578899
Q 001576 302 NRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRA 381 (1050)
Q Consensus 302 ~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpFCkk~~iepR~ 381 (1050)
...|.|.|.|+||| ++ ..+..++.|+++.+|| .+.++|.|||..+-|.+.+.+
T Consensus 372 ~~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~--~~eiivvdd~S~d~t~~~~~~--------------------- 424 (625)
T 2z86_A 372 KRVPLVSIYIPAYN---CS-KYIVRCVESALNQTIT--DLEVCICDDGSTDDTLRILQE--------------------- 424 (625)
T ss_dssp CSSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCC--SEEEEEEEESCSSSHHHHHHH---------------------
T ss_pred CCCCEEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCHHHHHHHHH---------------------
T ss_conf 35971799995789---88-9999999999817699--828999989698649999999---------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 31101233332348787035999999999999999999998864107984443346899899999889902577560578
Q 001576 382 PEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSE 461 (1050)
Q Consensus 382 Pe~yF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~~~ 461 (1050)
+.+
T Consensus 425 ----------------------------------------~~~------------------------------------- 427 (625)
T 2z86_A 425 ----------------------------------------HYA------------------------------------- 427 (625)
T ss_dssp ----------------------------------------HHT-------------------------------------
T ss_pred ----------------------------------------HHH-------------------------------------
T ss_conf ----------------------------------------885-------------------------------------
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH-CCCCCCCC
Q ss_conf 98665588778089994567999997875101158887502678998999954999889289999995411-27679962
Q 001576 462 GALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFL-MDPQLGKK 540 (1050)
Q Consensus 462 g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~nn~~~lr~amcff-~Dp~~g~~ 540 (1050)
..|++.++. ++ ...+++|+|.+++. ++|+||+.+|+|.+ ..|++|.+.+-.| .+| +
T Consensus 428 --------~~~~i~~~~-~~-----n~G~~~a~n~g~~~----a~g~~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~ 484 (625)
T 2z86_A 428 --------NHPRVRFIS-QK-----NKGIGSASNTAVRL----CRGFYIGQLDSDDF-LEPDAVELCLDEFRKDL----S 484 (625)
T ss_dssp --------TCTTEEEEE-EC-----CCCHHHHHHHHHHH----CCSSEEEECCTTCE-ECTTHHHHHHHHHHHCT----T
T ss_pred --------HCCCEEEEE-CC-----CCCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHHCC----C
T ss_conf --------499389991-79-----88989999999985----67787999889766-28359999999998479----8
Q ss_pred EEEEECCCCCCCC
Q ss_conf 8998127301699
Q 001576 541 LCYVQFPQRFDGI 553 (1050)
Q Consensus 541 vafVQ~PQ~F~ni 553 (1050)
++.|.....+.+.
T Consensus 485 ~~~v~~~~~~~~~ 497 (625)
T 2z86_A 485 LACVYTTNRNIDR 497 (625)
T ss_dssp CSEEEEEEEEECT
T ss_pred EEEEEEEEEEECC
T ss_conf 1399820489879
No 8
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=1.00 E-value=1 Score=107.61 Aligned_cols=124 Identities=14% Similarity=0.219 Sum_probs=91.6
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 88069980489999997999999999883979999847999179984244576678999963211233411578899311
Q 001576 305 APVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEF 384 (1050)
Q Consensus 305 p~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpFCkk~~iepR~Pe~ 384 (1050)
|.|.|.||||| ++ ..+..|+.|+++.+|| .+.+.|.|||..+-|.+.+.+
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~~------------------------ 50 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIRP------------------------ 50 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHGG------------------------
T ss_pred CEEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCCHHHHHHHH------------------------
T ss_conf 95999997179---77-8999999999856278--649999978997108999999------------------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 01233332348787035999999999999999999998864107984443346899899999889902577560578986
Q 001576 385 YFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGAL 464 (1050)
Q Consensus 385 yF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~~ 464 (1050)
+ . .
T Consensus 51 -------------------------------------~----~-------------------------------~----- 53 (255)
T 1qg8_A 51 -------------------------------------F----L-------------------------------N----- 53 (255)
T ss_dssp -------------------------------------G----G-------------------------------G-----
T ss_pred -------------------------------------H----H-------------------------------H-----
T ss_conf -------------------------------------8----6-------------------------------0-----
Q ss_pred CCCCCCCCCEEEEECCCCCCC----CCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHC-CCCCCC
Q ss_conf 655887780899945679999----978751011588875026789989999549998892899999954112-767996
Q 001576 465 DVEGKELPRLVYVSREKRPGY----NHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLM-DPQLGK 539 (1050)
Q Consensus 465 d~~~~~lP~lvYvsRekrpg~----~hh~KAGalNallrvSav~tngp~il~lDcDh~~nn~~~lr~amcff~-Dp~~g~ 539 (1050)
-|++.|+..+.. +. ....+++|+|.+++. ++|+||+.+|+|.+ ..|++|.+.+-.|. +|
T Consensus 54 ------~~~i~~i~~~~~-~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~-~~~~~l~~~~~~~~~~~---- 117 (255)
T 1qg8_A 54 ------DNRVRFYQSDIS-GVKERTEKTRYAALINQAIEM----AEGEYITYATDDNI-YMPDRLLKMVRELDTHP---- 117 (255)
T ss_dssp ------STTEEEEECCCC-SHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEE-ECTTHHHHHHHHHHHCT----
T ss_pred ------CCCEEEEECCCC-CCCCCCCCCCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHHCC----
T ss_conf ------698899964653-332221466789999999987----58888999689876-28279999999998589----
Q ss_pred CEEEEECCCCCC
Q ss_conf 289981273016
Q 001576 540 KLCYVQFPQRFD 551 (1050)
Q Consensus 540 ~vafVQ~PQ~F~ 551 (1050)
++++|.....+.
T Consensus 118 ~~~~v~~~~~~~ 129 (255)
T 1qg8_A 118 EKAVIYSASKTY 129 (255)
T ss_dssp TCCEEEEEEEEE
T ss_pred CCEEEEECEEEE
T ss_conf 905998432899
No 9
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=1.00 E-value=1 Score=102.25 Aligned_cols=118 Identities=13% Similarity=0.141 Sum_probs=86.0
Q ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 98806998048999999799999999988397999984799917998424457667899996321123341157889931
Q 001576 304 LAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPE 383 (1050)
Q Consensus 304 lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpFCkk~~iepR~Pe 383 (1050)
.|.|.|.||||| ++ ..+..++.|+++++|| .+.+.|.|||..+-|.+.+.+.+
T Consensus 1 Mp~vSVIIp~yN---~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~~~--------------------- 53 (729)
T 3l7i_A 1 MNKLTIIVTYYN---AE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDEAI--------------------- 53 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCCCHHHHHHHHH---------------------
T ss_conf 966999997678---78-9999999999827789--86999997899875799999999---------------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 10123333234878703599999999999999999999886410798444334689989999988990257756057898
Q 001576 384 FYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGA 463 (1050)
Q Consensus 384 ~yF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~ 463 (1050)
++ ++
T Consensus 54 ----------------------------------------~~------------------------~~------------ 57 (729)
T 3l7i_A 54 ----------------------------------------KD------------------------YD------------ 57 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------HH------------------------CC------------
T ss_conf ----------------------------------------74------------------------79------------
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 66558877808999456799999787510115888750267899899995499988928999999541127679962899
Q 001576 464 LDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCY 543 (1050)
Q Consensus 464 ~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~nn~~~lr~amcff~Dp~~g~~vaf 543 (1050)
+++.|+..++ ....++|.|.+++ .+.|+||+.+|+|.+ ..|++|.+.+-.+.++ ++.+
T Consensus 58 --------~~i~~i~~~~-----n~G~~~arN~gi~----~A~gdyI~flD~Dd~-~~p~~l~~l~~~l~~~----d~v~ 115 (729)
T 3l7i_A 58 --------KNIRFIDLDE-----NSGHAHARNIALE----EVETPYFMFLDADDE-LASYAITFYLEKFNNT----DGLI 115 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------CCEEEEECCC-----CCCHHHHHHHHHH----HCCCCEEEEECCCCC-CCHHHHHHHHHHHCCC----CEEE
T ss_conf --------9889998888-----7787999999998----666998999889877-7846999999982379----9899
Q ss_pred EEC
Q ss_conf 812
Q 001576 544 VQF 546 (1050)
Q Consensus 544 VQ~ 546 (1050)
...
T Consensus 116 ~~~ 118 (729)
T 3l7i_A 116 API 118 (729)
T ss_dssp ---
T ss_pred EEE
T ss_conf 866
No 10
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=1.00 E-value=1 Score=102.02 Aligned_cols=110 Identities=14% Similarity=0.154 Sum_probs=84.7
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99880699804899999979999999998839799998479991799842445766789999632112334115788993
Q 001576 303 RLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAP 382 (1050)
Q Consensus 303 ~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpFCkk~~iepR~P 382 (1050)
..|.|.|.||||| ++ ..+..++.|+++.+|| .+.+.|.|||..+-|.+.+.+
T Consensus 3 ~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~~---------------------- 54 (240)
T 3bcv_A 3 LIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICDD---------------------- 54 (240)
T ss_dssp CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHHH----------------------
T ss_pred CCCCEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCCCHHHHHHH----------------------
T ss_conf 9984899996689---77-8999999999957689--869999989998678999999----------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 11012333323487870359999999999999999999988641079844433468998999998899025775605789
Q 001576 383 EFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEG 462 (1050)
Q Consensus 383 e~yF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g 462 (1050)
+.+
T Consensus 55 ---------------------------------------~~~-------------------------------------- 57 (240)
T 3bcv_A 55 ---------------------------------------YAA-------------------------------------- 57 (240)
T ss_dssp ---------------------------------------HHH--------------------------------------
T ss_pred ---------------------------------------HHH--------------------------------------
T ss_conf ---------------------------------------996--------------------------------------
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 8665588778089994567999997875101158887502678998999954999889289999995411276
Q 001576 463 ALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDP 535 (1050)
Q Consensus 463 ~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~nn~~~lr~amcff~Dp 535 (1050)
..|++.++..+ ...+++|.|.+++. ++|+||+.+|+|.+ ..|++|.+.+-.+.++
T Consensus 58 -------~~~~i~~i~~~------n~G~~~a~N~g~~~----a~g~~i~~lD~Dd~-~~~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 58 -------QYPNIKVIHKK------NAGLGMACNSGLDV----ATGEYVAFCDSDDY-VDSDMYMTMYNVAQKY 112 (240)
T ss_dssp -------HCSSEEEEECC------CCCHHHHHHHHHHH----CCSSEEEECCTTCC-CCTTHHHHHHHHHHHH
T ss_pred -------HCCCEEEEECC------CCCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHHC
T ss_conf -------58978999889------99949999999997----68999999879875-8889999999999846
Done!