Query 001576
Match_columns 1050
No_of_seqs 355 out of 1820
Neff 5.1
Searched_HMMs 13730
Date Tue Mar 26 17:20:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001576.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_873-876//hhsearch_scop/001576hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1weoa_ g.44.1.1 (A:) Cellulos 100.0 3.5E-40 2.5E-44 291.2 8.2 84 25-108 5-88 (93)
2 d1xhba2 c.68.1.17 (A:95-422) P 99.5 3.6E-13 2.7E-17 105.4 13.6 128 300-548 17-144 (328)
3 d1qg8a_ c.68.1.1 (A:) Spore co 99.0 2.9E-09 2.1E-13 78.6 9.9 129 305-555 1-133 (255)
4 d1omza_ c.68.1.15 (A:) Alpha-1 98.5 7.1E-08 5.1E-12 69.1 6.2 108 304-535 2-109 (265)
5 d1ur6b_ g.44.1.1 (B:) Not-4 N- 94.6 0.0085 6.2E-07 34.1 2.5 48 39-89 3-50 (52)
6 d1g25a_ g.44.1.1 (A:) TFIIH Ma 94.6 0.019 1.4E-06 31.7 4.3 55 35-91 2-56 (65)
7 d2bo4a1 c.68.1.18 (A:2-382) Ma 94.2 0.13 9.7E-06 25.9 11.4 58 486-546 71-128 (381)
8 d1vyxa_ g.44.1.3 (A:) IE1B pro 91.3 0.085 6.2E-06 27.2 3.5 54 33-90 3-59 (60)
9 d1chca_ g.44.1.1 (A:) Immediat 87.8 0.48 3.5E-05 22.1 5.1 52 34-92 3-54 (68)
10 d1rmda2 g.44.1.1 (A:1-86) V(D) 77.3 1.5 0.00011 18.6 4.3 50 35-91 22-71 (86)
11 d1fbva4 g.44.1.1 (A:356-434) C 74.7 1.8 0.00013 18.1 4.7 50 35-91 22-71 (79)
12 d1wima_ g.44.1.1 (A:) UbcM4-in 73.0 1.8 0.00013 18.1 3.8 53 34-90 3-62 (94)
13 d1v87a_ g.44.1.1 (A:) Deltex p 69.4 2.4 0.00017 17.3 4.2 59 32-90 21-94 (114)
14 d1t1ha_ g.44.1.2 (A:) E3 ubiqu 68.9 2.3 0.00017 17.4 3.5 48 36-90 8-55 (78)
15 d2c2la2 g.44.1.2 (A:225-304) S 67.8 2.5 0.00018 17.1 3.8 46 37-89 8-53 (80)
16 d2baya1 g.44.1.2 (A:1-56) Pre- 51.1 4.7 0.00034 15.3 2.5 46 38-90 2-47 (56)
17 d1jm7a_ g.44.1.1 (A:) brca1 RI 48.4 5.3 0.00039 14.9 3.4 46 38-90 23-70 (103)
18 d1weva_ g.50.1.2 (A:) PHD fing 47.6 4.9 0.00035 15.2 2.2 57 36-94 16-79 (88)
19 d1jm7b_ g.44.1.1 (B:) bard1 RI 45.5 5.8 0.00042 14.6 4.0 44 38-90 24-67 (97)
20 d1bora_ g.44.1.1 (A:) Acute pr 41.2 6.8 0.00049 14.2 3.7 48 36-94 6-53 (56)
21 d1fo8a_ c.68.1.10 (A:) N-acety 38.7 7.4 0.00054 13.9 4.9 44 304-352 1-44 (343)
22 d1w55a1 c.68.1.13 (A:3-207) Is 38.4 7.5 0.00054 13.9 3.5 29 505-533 85-113 (205)
23 d1xbta2 g.39.1.14 (A:151-191) 35.3 5.7 0.00042 14.7 1.0 34 38-71 2-40 (41)
24 d1x61a2 g.39.1.3 (A:35-66) Thy 34.9 7.9 0.00058 13.7 1.6 29 38-72 1-29 (32)
25 d1iyma_ g.44.1.1 (A:) EL5 RING 33.9 8.7 0.00064 13.4 4.3 50 35-88 4-53 (55)
26 d2gmga1 a.4.5.82 (A:1-105) Hyp 32.0 8.7 0.00063 13.4 1.4 24 58-87 70-93 (105)
27 d1twfl_ g.41.9.2 (L:) RBP12 su 30.2 10 0.00073 13.0 1.8 27 37-65 5-31 (46)
28 d2b8ta2 g.39.1.14 (A:150-216) 26.7 6.6 0.00048 14.2 0.1 37 37-73 2-49 (67)
29 d1s3ga2 g.41.2.1 (A:126-160) M 24.4 12 0.00089 12.4 1.1 26 77-102 1-26 (35)
30 d1zbdb_ g.50.1.1 (B:) Effector 23.5 13 0.00095 12.2 3.3 56 31-88 43-101 (124)
31 d1mm2a_ g.50.1.2 (A:) Mi2-beta 23.3 13 0.00096 12.2 3.8 50 34-90 7-59 (61)
32 d2jnya1 b.171.1.1 (A:1-59) Unc 21.9 7.3 0.00053 13.9 -0.4 42 54-100 9-50 (59)
33 d1zina2 g.41.2.1 (A:126-160) M 21.2 14 0.0011 11.9 1.1 25 77-101 1-25 (35)
No 1
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=3.5e-40 Score=291.23 Aligned_cols=84 Identities=55% Similarity=1.194 Sum_probs=80.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999888779875554487643457998021046889861201156466218987888852222446865447997777
Q 001576 25 NEERPPTRQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRHKGCARVAGDEEDN 104 (1050)
Q Consensus 25 ~~~~~~~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd~ee~ 104 (1050)
+..+||++++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+|||||||||||||||||+||++|+
T Consensus 5 ~~g~kp~~~~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr~kgsprv~gDe~e~ 84 (93)
T d1weoa_ 5 SSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEE 84 (93)
T ss_dssp SSSSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCCCC
T ss_pred CCCCCCHHHCCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCC
T ss_conf 77997734515522011546324178998888752369864507899998516702744487245525898777871001
Q ss_pred CCCC
Q ss_conf 8752
Q 001576 105 FDDD 108 (1050)
Q Consensus 105 ~~dd 108 (1050)
++||
T Consensus 85 ~~d~ 88 (93)
T d1weoa_ 85 DIDS 88 (93)
T ss_dssp CSCC
T ss_pred CCCC
T ss_conf 4346
No 2
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.50 E-value=3.6e-13 Score=105.42 Aligned_cols=128 Identities=14% Similarity=0.032 Sum_probs=92.4
Q ss_pred CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999880699804899999979999999998839799998479991799842445766789999632112334115788
Q 001576 300 EPNRLAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEP 379 (1050)
Q Consensus 300 ~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpFCkk~~iep 379 (1050)
.++++|.|.|.||||| |....+..||-|+++..||.....+.|.|||...-|.....|
T Consensus 17 ~~~~~P~vSIIIp~yN---e~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~------------------- 74 (328)
T d1xhba2 17 YPDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLE------------------- 74 (328)
T ss_dssp CCSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHH-------------------
T ss_pred CCCCCCCEEEEEECCC---CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHH-------------------
T ss_conf 8999998899992267---817999999999996477779729999979997035799999-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 99311012333323487870359999999999999999999988641079844433468998999998899025775605
Q 001576 380 RAPEFYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLG 459 (1050)
Q Consensus 380 R~Pe~yF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~ 459 (1050)
++ .++
T Consensus 75 ----------------------------------~~-------~~~---------------------------------- 79 (328)
T d1xhba2 75 ----------------------------------SY-------VKK---------------------------------- 79 (328)
T ss_dssp ----------------------------------HH-------HHS----------------------------------
T ss_pred ----------------------------------HH-------HHH----------------------------------
T ss_conf ----------------------------------99-------985----------------------------------
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 78986655887780899945679999978751011588875026789989999549998892899999954112767996
Q 001576 460 SEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGK 539 (1050)
Q Consensus 460 ~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~nn~~~lr~amcff~Dp~~g~ 539 (1050)
.-+.+.++..++ ....|+|.|.+++ .++|+||+.+|+|.. ..|++|.+.+-.|.+.
T Consensus 80 ----------~~~~i~vi~~~~-----n~G~~~a~N~Gi~----~a~gd~i~flD~D~~-~~p~~l~~l~~~~~~~---- 135 (328)
T d1xhba2 80 ----------LKVPVHVIRMEQ-----RSGLIRARLKGAA----VSRGQVITFLDAHCE-CTAGWLEPLLARIKHD---- 135 (328)
T ss_dssp ----------SSSCEEEEECSS-----CCCHHHHHHHHHH----HCCSSEEEEEESSEE-ECTTCHHHHHHHHHHC----
T ss_pred ----------CCCCEEEEEECC-----CCCCHHHHHHHHH----HHHCCEEEECCCCCC-CCHHHHHHHHHHHHCC----
T ss_conf ----------689709997324-----4321688789998----631100220176556-6736999999999638----
Q ss_pred CEEEEECCC
Q ss_conf 289981273
Q 001576 540 KLCYVQFPQ 548 (1050)
Q Consensus 540 ~vafVQ~PQ 548 (1050)
+.+.|..+.
T Consensus 136 ~~~~v~~~~ 144 (328)
T d1xhba2 136 RRTVVCPII 144 (328)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEECCE
T ss_conf 974774104
No 3
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=98.95 E-value=2.9e-09 Score=78.57 Aligned_cols=129 Identities=13% Similarity=0.216 Sum_probs=91.3
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 88069980489999997999999999883979999847999179984244576678999963211233411578899311
Q 001576 305 APVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPEF 384 (1050)
Q Consensus 305 p~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpFCkk~~iepR~Pe~ 384 (1050)
|.|.|+||||| ++ ..+.+|+.|++.++||. +.++|.|||..+.|.+-+.+ |+++.
T Consensus 1 P~vSiiip~yN---~~-~~l~~~l~Si~~Qt~~~--~eiivvdd~S~d~t~~~l~~----------~~~~~--------- 55 (255)
T d1qg8a_ 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFSD--FELFIMDDNSNEETLNVIRP----------FLNDN--------- 55 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCCC--EEEEEEECSCCHHHHHHHGG----------GGGST---------
T ss_pred CEEEEEEECCC---CH-HHHHHHHHHHHHCCCCC--EEEEEEECCCCCCHHHHHHH----------HHHHC---------
T ss_conf 97999996279---88-99999999998288998--59999989897318999999----------64301---------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 01233332348787035999999999999999999998864107984443346899899999889902577560578986
Q 001576 385 YFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGAL 464 (1050)
Q Consensus 385 yF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~~ 464 (1050)
T Consensus 56 -------------------------------------------------------------------------------- 55 (255)
T d1qg8a_ 56 -------------------------------------------------------------------------------- 55 (255)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCEEEEECCCC---CCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHC-CCCCCCC
Q ss_conf 655887780899945679---999978751011588875026789989999549998892899999954112-7679962
Q 001576 465 DVEGKELPRLVYVSREKR---PGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLM-DPQLGKK 540 (1050)
Q Consensus 465 d~~~~~lP~lvYvsRekr---pg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~nn~~~lr~amcff~-Dp~~g~~ 540 (1050)
++.++.-+.. .......+++|+|.++. .++|+||+.+|+|.. ..|++|.+.+-+|. +| +
T Consensus 56 --------~i~~~~~~~~~~~~~~~~~g~~~a~N~gi~----~a~g~~i~~lD~Dd~-~~p~~l~~~~~~~~~~~----~ 118 (255)
T d1qg8a_ 56 --------RVRFYQSDISGVKERTEKTRYAALINQAIE----MAEGEYITYATDDNI-YMPDRLLKMVRELDTHP----E 118 (255)
T ss_dssp --------TEEEEECCCCSHHHHHSSCHHHHHHHHHHH----HCCCSEEEEEETTEE-ECTTHHHHHHHHHHHCT----T
T ss_pred --------CCCCCCCCCCCCCCCCCCCHHCCCCCCCCC----CCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHCC----C
T ss_conf --------222111123454322321000012222223----456663433366532-00255889999998498----7
Q ss_pred EEEEECCCCCCCCCC
Q ss_conf 899812730169997
Q 001576 541 LCYVQFPQRFDGIDR 555 (1050)
Q Consensus 541 vafVQ~PQ~F~nid~ 555 (1050)
+++|...++.++.+.
T Consensus 119 ~~~v~~~~~~~~~~~ 133 (255)
T d1qg8a_ 119 KAVIYSASKTYHLNE 133 (255)
T ss_dssp CCEEEEEEEEEEEC-
T ss_pred CCEEEECCEEEEECC
T ss_conf 776863103533078
No 4
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.54 E-value=7.1e-08 Score=69.06 Aligned_cols=108 Identities=10% Similarity=-0.012 Sum_probs=76.6
Q ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 98806998048999999799999999988397999984799917998424457667899996321123341157889931
Q 001576 304 LAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYIIEPRAPE 383 (1050)
Q Consensus 304 lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ltf~al~E~~~fA~~WvpFCkk~~iepR~Pe 383 (1050)
|-+..|.||||| +| ..+..+|-|+++++||.+ +.|.||+++.-|.+.+.+
T Consensus 2 ~~~~tvii~tyn---~~-~~l~~~l~sl~~q~~~~~---~iiV~d~~sd~~~~~i~~----------------------- 51 (265)
T d1omza_ 2 LDSFTLIMQTYN---RT-DLLLRLLNHYQAVPSLHK---VIVVWNNVGEKGPEELWN----------------------- 51 (265)
T ss_dssp TTCEEEEEEESS---CH-HHHHHHHHHHTTSTTEEE---EEEEECCTTCCCTHHHHH-----------------------
T ss_pred CCCEEEEEECCC---CH-HHHHHHHHHHHCCCCCCE---EEEEECCCCCCCHHHHHH-----------------------
T ss_conf 886899997279---98-999999999973899596---999989899960999998-----------------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 10123333234878703599999999999999999999886410798444334689989999988990257756057898
Q 001576 384 FYFSQKIDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGA 463 (1050)
Q Consensus 384 ~yF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~vp~~~w~m~dgt~w~g~~~~dhp~iiqv~l~~~g~ 463 (1050)
+.. +
T Consensus 52 -----------------------------------------~~~---------------------~-------------- 55 (265)
T d1omza_ 52 -----------------------------------------SLG---------------------P-------------- 55 (265)
T ss_dssp -----------------------------------------HTC---------------------C--------------
T ss_pred -----------------------------------------HHC---------------------C--------------
T ss_conf -----------------------------------------753---------------------5--------------
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 665588778089994567999997875101158887502678998999954999889289999995411276
Q 001576 464 LDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDP 535 (1050)
Q Consensus 464 ~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~nn~~~lr~amcff~Dp 535 (1050)
-+..++... ++..+++|+|+++. ..+|+||+.+|+|.. ..|++|.+.+-.+.+.
T Consensus 56 -------~~~~~~~~~------~~~g~~~a~n~~~~----~a~ge~i~~lD~D~~-~~~~~l~~l~~~~~~~ 109 (265)
T d1omza_ 56 -------HPIPVIFKP------QTANKMRNRLQVFP----EVETNAVLMVDDDTL-ISAQDLVFAFSIWQQF 109 (265)
T ss_dssp -------CSSCEEEEE------CSSCCGGGGGSCCT----TCCSSEEEEECTTEE-ECHHHHHHHHHHHTTS
T ss_pred -------CCEEEEEEC------CCCCCHHHHHHHHH----HCCCCEEEEECCCCC-CCHHHHHHHHHHHHHC
T ss_conf -------653898723------78882345425488----689678999676557-7879999999999858
No 5
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.65 E-value=0.0085 Score=34.14 Aligned_cols=48 Identities=29% Similarity=0.913 Sum_probs=38.5
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 554487643457998021046889861201156466218987888852222
Q 001576 39 CRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYK 89 (1050)
Q Consensus 39 CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Yk 89 (1050)
|.||-++.. .+...+..+ .|+-.+|+.|+..-.+.++..||.|+++|+
T Consensus 3 CpICl~~~~--~~~~~~~~~-~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~ 50 (52)
T d1ur6b_ 3 CPLCMEPLE--IDDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYP 50 (52)
T ss_dssp ETTTTEECC--GGGTTCCSS-SSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred CCCCCHHHH--CCCCEEEEC-CCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 958782351--898259866-997704558999999664898986579488
No 6
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.62 E-value=0.019 Score=31.67 Aligned_cols=55 Identities=24% Similarity=0.577 Sum_probs=43.2
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 987555448764345799802104688986120115646621898788885222244
Q 001576 35 GSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 35 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 91 (1050)
....|.||-++.....+...++ ..|+-..|+.|.+--.+.+++.||.|+++.++.
T Consensus 2 dd~~CpIC~~~~~~~~~~~~~~--~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~ 56 (65)
T d1g25a_ 2 DDQGCPRCKTTKYRNPSLKLMV--NVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEE--CTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCCCCCCCCEEECCCCEEEEE--CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 9899870882600399567984--763727648899998570819799998681304
No 7
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}
Probab=94.25 E-value=0.13 Score=25.89 Aligned_cols=58 Identities=21% Similarity=-0.018 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 9787510115888750267899899995499988928999999541127679962899812
Q 001576 486 NHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYLNNSKAVREAMCFLMDPQLGKKLCYVQF 546 (1050)
Q Consensus 486 ~hh~KAGalNallrvSav~tngp~il~lDcDh~~nn~~~lr~amcff~Dp~~g~~vafVQ~ 546 (1050)
-...|..++.++++.....+.|++|+.+|||..-.+|+.+...+.-+.+ |.++..--+
T Consensus 71 ~~~GKG~g~~~A~~~g~~~a~gd~lvflDADl~~~~pe~i~~L~~~i~~---g~d~V~g~y 128 (381)
T d2bo4a1 71 LRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADF---GYGLVRHYF 128 (381)
T ss_dssp SSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHT---TCSEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHH---HCCEEEEEE
T ss_conf 6578848899999999970888889997587676779999999998763---057589863
No 8
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=91.30 E-value=0.085 Score=27.25 Aligned_cols=54 Identities=24% Similarity=0.480 Sum_probs=38.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECC--CCCCCCCCHHHHHHHH-HCCCCCCCCCCCCCCC
Q ss_conf 77987555448764345799802104--6889861201156466-2189878888522224
Q 001576 33 QSGSKLCRVCGDEIGLKENGELFVAC--HECGFPVCRPCYEYER-SEGSQCCPGCNTRYKR 90 (1050)
Q Consensus 33 ~~~~~~CqiCgd~vg~~~~G~~fvaC--~eC~FpVCR~Cyeyer-keG~~~CPqCkt~Ykr 90 (1050)
.-...+|.||-++. +++...+| ..|.--+++.|.+-=. ..++..||.|+++|+-
T Consensus 3 ded~~~C~IC~~~~----~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~ 59 (60)
T d1vyxa_ 3 DEDVPVCWICNEEL----GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEEC----SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCCCCCCCCCC----CCCEEEECCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCEEEC
T ss_conf 88899992388627----7751673145897788738999999710789889166971242
No 9
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}
Probab=87.83 E-value=0.48 Score=22.11 Aligned_cols=52 Identities=15% Similarity=0.401 Sum_probs=36.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 79875554487643457998021046889861201156466218987888852222446
Q 001576 34 SGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRHK 92 (1050)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~k 92 (1050)
..+..|.||-+.+.- .+.+..|+---|..|.+-=.+. +..||-|+++.....
T Consensus 3 ~~~d~C~IC~~~~~~------~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~~~~ 54 (68)
T d1chca_ 3 TVAERCPICLEDPSN------YSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVESVV 54 (68)
T ss_dssp CCCCCCSSCCSCCCS------CEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCCEE
T ss_pred CCCCCCCCCCCCCCC------CCEEECCCCCCCHHHHHHHHHH-CCCCCCCCCCHHHHC
T ss_conf 979999449939668------8388289991768999999982-990888781637242
No 10
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=77.26 E-value=1.5 Score=18.62 Aligned_cols=50 Identities=20% Similarity=0.416 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 987555448764345799802104688986120115646621898788885222244
Q 001576 35 GSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 35 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 91 (1050)
+.-.|.||-|.. . ++.+ - .|+---||.|.+.-.+.++..||.|+.++...
T Consensus 22 ~~l~C~IC~~~~-~----~pv~-~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~ 71 (86)
T d1rmda2 22 KSISCQICEHIL-A----DPVE-T-SCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (86)
T ss_dssp HHTBCTTTCSBC-S----SEEE-C-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCH-H----CCEE-C-CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 675995678444-1----5552-6-78876319999999964879070369979966
No 11
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.69 E-value=1.8 Score=18.13 Aligned_cols=50 Identities=24% Similarity=0.647 Sum_probs=37.6
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 987555448764345799802104688986120115646621898788885222244
Q 001576 35 GSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRH 91 (1050)
Q Consensus 35 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~ 91 (1050)
.-.+|.||-|..- ++.+ ..||--.|+.|.+--.+++++.||=|+...++.
T Consensus 22 ~~~~C~IC~~~~~-----~~~~--~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~ 71 (79)
T d1fbva4 22 TFQLCKICAENDK-----DVKI--EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 71 (79)
T ss_dssp CTTBCTTTSSSBC-----CEEC--SSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred CCCCCCCCCCCCC-----CEEE--ECCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 9899935897689-----9699--589993529999999997858189979586477
No 12
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.95 E-value=1.8 Score=18.08 Aligned_cols=53 Identities=26% Similarity=0.506 Sum_probs=37.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHH----HHCCCC---CCCCCCCCCCC
Q ss_conf 7987555448764345799802104688986120115646----621898---78888522224
Q 001576 34 SGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYE----RSEGSQ---CCPGCNTRYKR 90 (1050)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyeye----rkeG~~---~CPqCkt~Ykr 90 (1050)
+++..|.||-+++- ++.++....|+-..|+.|...- .++|+. .||+|+-+.+.
T Consensus 3 ~~~~~C~IC~~~~~----~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~ 62 (94)
T d1wima_ 3 SGSSGCKLCLGEYP----VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp CSBCCCSSSCCCCB----GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCCCCCCCCCCCCC----CCCEEEECCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 98984931798360----7755777899998488179999999985179665589199988786
No 13
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=69.39 E-value=2.4 Score=17.33 Aligned_cols=59 Identities=19% Similarity=0.436 Sum_probs=38.2
Q ss_pred CCCCCCCCCCCCCCCCCCC-----------CCCEEECCCCCCCCCCHHHHHHHHH----CCCCCCCCCCCCCCC
Q ss_conf 8779875554487643457-----------9980210468898612011564662----189878888522224
Q 001576 32 RQSGSKLCRVCGDEIGLKE-----------NGELFVACHECGFPVCRPCYEYERS----EGSQCCPGCNTRYKR 90 (1050)
Q Consensus 32 ~~~~~~~CqiCgd~vg~~~-----------~G~~fvaC~eC~FpVCR~Cyeyerk----eG~~~CPqCkt~Ykr 90 (1050)
+......|.||-+++.... ..+..+-.-.|+=-.|+.|.+-=.+ +|+-.||-|++.|-.
T Consensus 21 ~~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T d1v87a_ 21 KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCC
T ss_conf 04656534530100013444335433345455434687999990569999999996675789766550122066
No 14
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=68.91 E-value=2.3 Score=17.39 Aligned_cols=48 Identities=13% Similarity=0.179 Sum_probs=35.9
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 8755544876434579980210468898612011564662189878888522224
Q 001576 36 SKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKR 90 (1050)
Q Consensus 36 ~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr 90 (1050)
.-.|.||.+ ++.+ +.+ . .||.-.||.|.+--.+.++..||.|+.+...
T Consensus 8 ~l~CpIc~~-~m~d----PV~-~-~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~ 55 (78)
T d1t1ha_ 8 YFRCPISLE-LMKD----PVI-V-STGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSCTTTSC-CCSS----EEE-E-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CCCCCCCCC-HHHC----CEE-C-CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 279917181-2108----337-2-6777433999999999888878865563775
No 15
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=67.76 E-value=2.5 Score=17.10 Aligned_cols=46 Identities=11% Similarity=0.010 Sum_probs=34.7
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 75554487643457998021046889861201156466218987888852222
Q 001576 37 KLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYK 89 (1050)
Q Consensus 37 ~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Yk 89 (1050)
-.|.||. +++.+ +.+. .||.-.||.|.+--...++..||.|+++-.
T Consensus 8 l~CpIc~-~l~~d----Pv~~--~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~ 53 (80)
T d2c2la2 8 LCGKISF-ELMRE----PCIT--PSGITYDRKDIEEHLQRVGHFNPVTRSPLT 53 (80)
T ss_dssp TBCTTTC-SBCSS----EEEC--SSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCCCCC-CHHHH----HCCC--CCCCEECHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 1185837-32340----3305--886856388999998637765787566654
No 16
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=51.06 E-value=4.7 Score=15.27 Aligned_cols=46 Identities=13% Similarity=0.084 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 55544876434579980210468898612011564662189878888522224
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKR 90 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr 90 (1050)
+|.||++-. . ++.+. ..||.--||.|.+.-.++ ++.||.|+++-..
T Consensus 2 ~C~Ic~~~~-~----~Pv~~-~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~ 47 (56)
T d2baya1 2 LCAISGKVP-R----RPVLS-PKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI 47 (56)
T ss_dssp CCTTTCSCC-S----SEEEE-TTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG
T ss_pred CCCCCCCHH-H----HCCCC-CCCCCCCCHHHHHHHHHH-CCCCCCCCCCCCH
T ss_conf 993678568-8----65745-789984559999998760-3679854781887
No 17
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.36 E-value=5.3 Score=14.90 Aligned_cols=46 Identities=24% Similarity=0.586 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHH--HHCCCCCCCCCCCCCCC
Q ss_conf 555448764345799802104688986120115646--62189878888522224
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYE--RSEGSQCCPGCNTRYKR 90 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyeye--rkeG~~~CPqCkt~Ykr 90 (1050)
.|.||-+.. . ++.. . .|+--.|+.|.+.- ++.+.-.||.|++++..
T Consensus 23 ~CpIC~~~~-~----~pv~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (103)
T d1jm7a_ 23 ECPICLELI-K----EPVS-T-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (103)
T ss_dssp SCSSSCCCC-S----SCCB-C-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCCCHH-C----CEEE-C-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 997218231-8----9188-3-799864167899999977999809698883875
No 18
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=47.65 E-value=4.9 Score=15.16 Aligned_cols=57 Identities=23% Similarity=0.446 Sum_probs=39.9
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHH----H--H-HCCCCCCCCCCCCCCCCCCC
Q ss_conf 8755544876434579980210468898612011564----6--6-21898788885222244686
Q 001576 36 SKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEY----E--R-SEGSQCCPGCNTRYKRHKGC 94 (1050)
Q Consensus 36 ~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyey----e--r-keG~~~CPqCkt~Ykr~kgs 94 (1050)
...|.||+... ..++..+|.|..|.--.=-.|+.- + . .++.=.||+|+...++.+.+
T Consensus 16 ~~~C~iC~~~~--~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~~~~~~ 79 (88)
T d1weva_ 16 GLACVVCRQMT--VASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQK 79 (88)
T ss_dssp CCSCSSSCCCC--CCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTC
T ss_pred CCCCCCCCCCC--CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHC
T ss_conf 59925789906--78999688848999745611279855543345589838994457337655521
No 19
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.54 E-value=5.8 Score=14.62 Aligned_cols=44 Identities=25% Similarity=0.464 Sum_probs=30.9
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 55544876434579980210468898612011564662189878888522224
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKR 90 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr 90 (1050)
.|.||-+..- ++.+.. .|+.-.|+.|.+--. + ..||.|+.+...
T Consensus 24 ~C~IC~~~~~-----~pv~~~-~CgH~fC~~Ci~~~~--~-~~CP~Cr~~~~~ 67 (97)
T d1jm7b_ 24 RCSRCTNILR-----EPVCLG-GCEHIFCSNCVSDCI--G-TGCPVCYTPAWI 67 (97)
T ss_dssp SCSSSCSCCS-----SCBCCC-SSSCCBCTTTGGGGT--T-TBCSSSCCBCSC
T ss_pred CCCCCCCHHH-----CCCEEC-CCCCCHHHHHHHHHH--H-CCCCCCCCCCCH
T ss_conf 9925872211-----274658-899930299999998--5-366622786765
No 20
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.24 E-value=6.8 Score=14.18 Aligned_cols=48 Identities=21% Similarity=0.492 Sum_probs=33.3
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 87555448764345799802104688986120115646621898788885222244686
Q 001576 36 SKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRHKGC 94 (1050)
Q Consensus 36 ~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~kgs 94 (1050)
.-.|.||.|..- +. ... .|+--.|+.|.+ ..+..||-|+.+....++-
T Consensus 6 ~l~C~IC~~~~~---~p-~~l---pCgH~fC~~Ci~----~~~~~CP~Cr~~~~~~~~~ 53 (56)
T d1bora_ 6 FLRCQQCQAEAK---CP-KLL---PCLHTLCSGCLE----ASGMQCPICQAPWPLGADT 53 (56)
T ss_dssp CSSCSSSCSSCB---CC-SCS---TTSCCSBTTTCS----SSSSSCSSCCSSSSCCSSC
T ss_pred CCCCCCCCCCCC---CC-EEE---CCCCHHHHHHHH----CCCCCCCCCCCCCCCCCCC
T ss_conf 889840294158---97-890---177778599887----2979684979966699898
No 21
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=38.67 E-value=7.4 Score=13.91 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=35.2
Q ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCH
Q ss_conf 9880699804899999979999999998839799998479991799842
Q 001576 304 LAPVDVFVSTVDPLKEPPIITANTVLSILSMDYPVDKVSCYVSDDGASM 352 (1050)
Q Consensus 304 lp~VDvfV~T~dp~kEpp~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ 352 (1050)
+|-|-|.|-+|| -| . +..|+.|++...-..++..+||+-||...
T Consensus 1 ~~viPVlv~a~N---RP-~-l~r~LesLlk~~p~~~~~~I~Vs~DG~~~ 44 (343)
T d1fo8a_ 1 LAVIPILVIACD---RS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHE 44 (343)
T ss_dssp CCCCCEEEEESS---CT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCH
T ss_pred CCCCCEEEEECC---HH-H-HHHHHHHHHHCCCCCCCCCEEEEECCCCH
T ss_conf 983048999757---78-8-99999999842755668538999649954
No 22
>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}
Probab=38.36 E-value=7.5 Score=13.88 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=21.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHC
Q ss_conf 89989999549998892899999954112
Q 001576 505 TNAPFILNLDCDHYLNNSKAVREAMCFLM 533 (1050)
Q Consensus 505 tngp~il~lDcDh~~nn~~~lr~amcff~ 533 (1050)
-+.++|++.|||.-.-.++.+.+.+-...
T Consensus 85 ~~~~~VlIhd~~rP~i~~~~i~~li~~~~ 113 (205)
T d1w55a1 85 IDSEFVMVSDVARVLVSKNLFDRLIENLD 113 (205)
T ss_dssp CCSSEEEEEETTCTTCCHHHHHHHHTTGG
T ss_pred HHHCCEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 53120365125761575989888776543
No 23
>d1xbta2 g.39.1.14 (A:151-191) Thymidine kinase, TK1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.31 E-value=5.7 Score=14.67 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=20.9
Q ss_pred CCCCCCCCCCCC----CCCC-EEECCCCCCCCCCHHHHH
Q ss_conf 555448764345----7998-021046889861201156
Q 001576 38 LCRVCGDEIGLK----ENGE-LFVACHECGFPVCRPCYE 71 (1050)
Q Consensus 38 ~CqiCgd~vg~~----~~G~-~fvaC~eC~FpVCR~Cye 71 (1050)
+|..||.+.-.+ .+++ ..|.-.|==-|+||.||.
T Consensus 2 vC~~Cg~~A~ft~R~~~~~~~v~IGg~d~Y~~~CR~cy~ 40 (41)
T d1xbta2 2 VCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYF 40 (41)
T ss_dssp ECTTTCSEECEEEECSCCCSSCCCCSTTTEEEECHHHHT
T ss_pred CCCCCCCCCEEEEEECCCCCEEEECCCCCEEEHHHHHHC
T ss_conf 997789904578998499997998898869862446316
No 24
>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.92 E-value=7.9 Score=13.70 Aligned_cols=29 Identities=28% Similarity=0.769 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHH
Q ss_conf 55544876434579980210468898612011564
Q 001576 38 LCRVCGDEIGLKENGELFVACHECGFPVCRPCYEY 72 (1050)
Q Consensus 38 ~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyey 72 (1050)
+|.+|+.+ -+|++|-|-.-=+| |-|||.-
T Consensus 1 vC~tC~~k----LRGqpFYAvekkay--CE~CYi~ 29 (32)
T d1x61a2 1 VCSTCRAQ----LRGQHFYAVERRAY--CEGCYVA 29 (32)
T ss_dssp BCSSSCCB----CTTSCEEESSSCEE--EHHHHHH
T ss_pred CEEEECCE----ECCCCCEEEECCCC--CCCEEEE
T ss_conf 93580745----15880358621103--5630666
No 25
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=33.89 E-value=8.7 Score=13.41 Aligned_cols=50 Identities=24% Similarity=0.414 Sum_probs=35.0
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 987555448764345799802104688986120115646621898788885222
Q 001576 35 GSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRY 88 (1050)
Q Consensus 35 ~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Y 88 (1050)
.+..|.||-++... |+..+-+-.|+=--|..|..-=.+ -++.||-|+.+.
T Consensus 4 d~~~C~ICl~~~~~---~~~~~~l~~C~H~Fh~~Ci~~Wl~-~~~~CP~CR~~i 53 (55)
T d1iyma_ 4 DGVECAVCLAELED---GEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCT---TSCCEECSSSCCEECTTHHHHTTT-TCCSCSSSCCCS
T ss_pred CCCCCEEECCCCCC---CCEEEEECCCCCCCCHHHHHHHHH-HCCCCCCCCCEE
T ss_conf 99998497900107---988999089898105999999998-499387889784
No 26
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}
Probab=31.97 E-value=8.7 Score=13.44 Aligned_cols=24 Identities=38% Similarity=1.002 Sum_probs=10.8
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 468898612011564662189878888522
Q 001576 58 CHECGFPVCRPCYEYERSEGSQCCPGCNTR 87 (1050)
Q Consensus 58 C~eC~FpVCR~CyeyerkeG~~~CPqCkt~ 87 (1050)
|..||| |=|+ +.+ --.-||.||.-
T Consensus 70 CrkCGf-vFr~----~~k-kPSRCP~CKSE 93 (105)
T d2gmga1 70 CRKCGF-VFKA----EIN-IPSRCPKCKSE 93 (105)
T ss_dssp BTTTCC-BCCC----CSS-CCSSCSSSCCC
T ss_pred HHHCCC-EECC----CCC-CCCCCCCCCCC
T ss_conf 523677-6056----689-99989988872
No 27
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.17 E-value=10 Score=13.00 Aligned_cols=27 Identities=26% Similarity=0.778 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 75554487643457998021046889861
Q 001576 37 KLCRVCGDEIGLKENGELFVACHECGFPV 65 (1050)
Q Consensus 37 ~~CqiCgd~vg~~~~G~~fvaC~eC~FpV 65 (1050)
-+|.-||.++.+..+ +-+-|.|||+.|
T Consensus 5 YiCgeCg~~~~l~~~--d~irCreCG~RI 31 (46)
T d1twfl_ 5 YICAECSSKLSLSRT--DAVRCKDCGHRI 31 (46)
T ss_dssp EECSSSCCEECCCTT--STTCCSSSCCCC
T ss_pred EECCCCCCCEEECCC--CCEEECCCCCEE
T ss_conf 985468981076899--968811188587
No 28
>d2b8ta2 g.39.1.14 (A:150-216) Thymidine kinase, TK1, C-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}
Probab=26.72 E-value=6.6 Score=14.24 Aligned_cols=37 Identities=27% Similarity=0.537 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCCC----------CCC-EEECCCCCCCCCCHHHHHHH
Q ss_conf 75554487643457----------998-02104688986120115646
Q 001576 37 KLCRVCGDEIGLKE----------NGE-LFVACHECGFPVCRPCYEYE 73 (1050)
Q Consensus 37 ~~CqiCgd~vg~~~----------~G~-~fvaC~eC~FpVCR~Cyeye 73 (1050)
.||..||.+.-.+. +|+ ..+..+|===|+||.||+.-
T Consensus 2 AIC~~CG~~A~~t~R~~~~~~~~~~g~~i~IGg~e~Y~a~CR~cy~~p 49 (67)
T d2b8ta2 2 AICNECGAEATHSLRKIDGKHADYNDDIVKIGCQEFYSAVCRHHHKVP 49 (67)
T ss_dssp EECTTTCSEECEEEEEETTEECCTTSCSCCCCSTTTEEEECGGGCCCT
T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCEEEHHHHHCCCC
T ss_conf 486659891204798838987655799788678750761205535589
No 29
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}
Probab=24.45 E-value=12 Score=12.40 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89878888522224468654479977
Q 001576 77 GSQCCPGCNTRYKRHKGCARVAGDEE 102 (1050)
Q Consensus 77 G~~~CPqCkt~Ykr~kgsprv~gd~e 102 (1050)
|+.+||.|++-|-..---|+++|--|
T Consensus 1 GR~~C~~CG~~Yh~~~~pPk~~g~CD 26 (35)
T d1s3ga2 1 GRRICKVCGTSYHLLFNPPQVEGKCD 26 (35)
T ss_dssp SEEEETTTCCEEETTTBCCSBTTBCT
T ss_pred CCCCCCCCCCHHCCCCCCCCCCCCCC
T ss_conf 96688574751145667988888367
No 30
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.53 E-value=13 Score=12.21 Aligned_cols=56 Identities=25% Similarity=0.574 Sum_probs=36.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHH---HHCCCCCCCCCCCCC
Q ss_conf 8877987555448764345799802104688986120115646---621898788885222
Q 001576 31 TRQSGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYE---RSEGSQCCPGCNTRY 88 (1050)
Q Consensus 31 ~~~~~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyeye---rkeG~~~CPqCkt~Y 88 (1050)
++..+...|.+|+-..+... .--..|..|+.-||+.|-.+- ..+..-+|.-|....
T Consensus 43 ~~~~~~~~C~~C~~~f~~~~--~~~~~C~~C~~~~C~~C~~~~~~~~~~~~w~C~~C~k~r 101 (124)
T d1zbdb_ 43 VAGDGVNRCILCGEQLGMLG--SASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQR 101 (124)
T ss_dssp CCSCSSSBCSSSCCBCSTTS--CCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHH
T ss_conf 21367985834597334789--998867247860115887775689999798980675269
No 31
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.35 E-value=13 Score=12.19 Aligned_cols=50 Identities=26% Similarity=0.622 Sum_probs=35.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHH---CCCCCCCCCCCCCCC
Q ss_conf 798755544876434579980210468898612011564662---189878888522224
Q 001576 34 SGSKLCRVCGDEIGLKENGELFVACHECGFPVCRPCYEYERS---EGSQCCPGCNTRYKR 90 (1050)
Q Consensus 34 ~~~~~CqiCgd~vg~~~~G~~fvaC~eC~FpVCR~Cyeyerk---eG~~~CPqCkt~Ykr 90 (1050)
.+..+|++|++ +...|.|..|..-..-.|.....+ ++.=.||.|+..-..
T Consensus 7 ~~~~~C~~C~~-------~g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~~k 59 (61)
T d1mm2a_ 7 HHMEFCRVCKD-------GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 59 (61)
T ss_dssp SSCSSCTTTCC-------CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCT
T ss_pred CCCCCCCCCCC-------CCEEEEECCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf 88689867899-------795888699996076114588857589976899788384567
No 32
>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=21.88 E-value=7.3 Score=13.93 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=31.5
Q ss_pred EEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02104688986120115646621898788885222244686544799
Q 001576 54 LFVACHECGFPVCRPCYEYERSEGSQCCPGCNTRYKRHKGCARVAGD 100 (1050)
Q Consensus 54 ~fvaC~eC~FpVCR~CyeyerkeG~~~CPqCkt~Ykr~kgsprv~gd 100 (1050)
.+.+| |+|+-..+|+..++.=+|+.|+-.|--..|-|-.--|
T Consensus 9 ~iL~C-----P~ck~~L~~~~~~~~Lvc~~~~~~YPI~dgIPvLL~d 50 (59)
T d2jnya1 9 EVLAC-----PKDKGPLRYLESEQLLVNERLNLAYRIDDGIPVLLID 50 (59)
T ss_dssp CCCBC-----TTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCSS
T ss_pred HHHCC-----CCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCHH
T ss_conf 87158-----7999870796889989748648545252995021899
No 33
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=21.18 E-value=14 Score=11.90 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8987888852222446865447997
Q 001576 77 GSQCCPGCNTRYKRHKGCARVAGDE 101 (1050)
Q Consensus 77 G~~~CPqCkt~Ykr~kgsprv~gd~ 101 (1050)
|+.+||.|++.|-..---|+++|--
T Consensus 1 GRr~C~~CG~~Yh~~~~pPk~~g~C 25 (35)
T d1zina2 1 GRRICRNCGATYHLIFHPPAKPGVC 25 (35)
T ss_dssp TEEEETTTCCEEETTTBCCSSTTBC
T ss_pred CCCCCCCCCCHHCCCCCCCCCCCCC
T ss_conf 9658867675212656798878847
Done!