BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001578
(1050 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 71/134 (52%)
Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
EAW G A G+ EAI+ KALE +P SA+ + G +K D++ A+E
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
++LD + A+ LG A G+Y +A E + KA++LD EAW +L Y + ++
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121
Query: 570 ALECLQQVLYIDKR 583
A+E Q+ L +D R
Sbjct: 122 AIEYYQKALELDPR 135
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 70/132 (53%)
Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
EA G A Q + + AI + +A++ +P + EAW G A G+ EAI+ KA
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535
LE +P SA+ + G +K D++ A+E ++LD + A+ LG A G+Y +
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121
Query: 536 AEEAHLKAIQLD 547
A E + KA++LD
Sbjct: 122 AIEYYQKALELD 133
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 64/126 (50%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G A +G Y AI + + L+ DP EA G A Q + + AI + +A++ +P
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
+ EAW G A G+ EAI+ KALE +P SA+ + G +K D++ A+E
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127
Query: 508 ACVKLD 513
++LD
Sbjct: 128 KALELD 133
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 65/127 (51%)
Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
LG A G+Y +A E + KA++LD EAW +L Y + ++A+E Q+ L +D
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 583 RFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
R ++A+ +AI+ L +DP + E Y + Y+ G+Y EAI+ Y
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Query: 643 DAALDLE 649
AL+L+
Sbjct: 127 QKALELD 133
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 377 KSISVDFR-----LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431
K++ +D R + G A +G Y AI + + L+ DP EA G A Q +
Sbjct: 26 KALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85
Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482
+ AI + +A++ +P + EAW G A G+ EAI+ KALE +P S
Sbjct: 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%)
Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
A+ + G +K D++ A+E ++LD + A+ LG A G+Y +A E + K
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXK 602
A++LD EAW +L Y + ++A+E Q+ L +D R ++A+
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 603 KAIKDLSSGLGIDP 616
+AI+ L +DP
Sbjct: 121 EAIEYYQKALELDP 134
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%)
Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSG 611
EAW +L Y + ++A+E Q+ L +D R ++A+ +AI+
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQK 666
L +DP + E Y + Y+ G+Y EAI+ Y AL+L+ S E + A+Y++
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 116
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662
+AI+ L +DP + E Y + Y+ G+Y EAI+ Y AL+L+ S E A
Sbjct: 19 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE-------A 71
Query: 663 FYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQ 713
+Y A Y + ++ ++DP E W N+ Y+Q
Sbjct: 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY------NLGNAYYKQ 116
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 63.9 bits (154), Expect = 5e-10, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 59/107 (55%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
++ EAW G A G+ EAI+ KALE +PN+A+ + G +K D++ A+E
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
++LD N A+ LG A G+Y +A E + KA++LD N EA
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 58/116 (50%)
Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
EA G A Q + + AI + +A++ +P+ EAW G A G+ EAI+ KA
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531
LE +PN+A+ + G +K D++ A+E ++LD N A LG A G
Sbjct: 70 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 56.2 bits (134), Expect = 9e-08, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 51/97 (52%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G A +G Y AI + + L+ DP EA G A Q + + AI + +A++ +P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
EAW G A G+ EAI+ KALE +PN+A+
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112
Score = 56.2 bits (134), Expect = 9e-08, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 58/107 (54%)
Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
NSA+ + G +K D++ A+E ++LD N A+ LG A G+Y +A E +
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
KA++LD N EAW +L Y + ++A+E Q+ L +D ++A
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
N EAW +L Y + ++A+E Q+ L +D ++A+ +AI+
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
L +DP+N E Y + Y+ G+Y EAI+ Y AL+L+ ++ E
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112
Score = 37.4 bits (85), Expect = 0.040, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662
+AI+ L +DP+N E Y + Y+ G+Y EAI+ Y AL+L+ ++ E + A
Sbjct: 27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86
Query: 663 FYQK 666
+Y++
Sbjct: 87 YYKQ 90
Score = 36.6 bits (83), Expect = 0.075, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G A +G Y AI + + L+ DP EA G A Q + + AI + +A++ +P+
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Query: 448 AGEAWKRRGQARAALG 463
EA + G A+ G
Sbjct: 110 NAEAKQNLGNAKQKQG 125
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 613 GIDPSN-IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALY 671
+DP N E Y + Y+ G+Y EAI+ Y AL+L+ ++ E A+Y A Y
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE-------AWYNLGNAYY 54
Query: 672 TASKINSEFCWFDIDGDIDPLFKEYW 697
+ ++ ++DP E W
Sbjct: 55 KQGDYDEAIEYYQKALELDPNNAEAW 80
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 58/107 (54%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
++ EAWK G A G+ +AI+ KALE +PN+A + G +K D+ A+E
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
++LD N A+ G A G+Y+KA E + KA++LD N +A
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113
Score = 59.7 bits (143), Expect = 8e-09, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 52/96 (54%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G A +G Y AI + + L+ DP A G A Q + + AI + +A++ +P+
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
+AW RRG A G+ +AI+D KALE +PN+A
Sbjct: 76 NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNA 111
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 57/116 (49%)
Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
EA G A Q + + AI + +A++ +P+ AW G A G+ +AI+ KA
Sbjct: 10 EAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKA 69
Query: 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531
LE +PN+A + RG +K D+ A+ED ++LD N A LG A G
Sbjct: 70 LELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
N EAW +L Y + +KA+E Q+ L +D + A+ +KAI+
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
L +DP+N + Y R + Y+ G+Y++AI+DY AL+L+
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELD 107
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 56/107 (52%)
Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
NSA+ G +K D+ A+E ++LD N SA+ LG A G+Y+KA E +
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
KA++LD N +AW Y + +KA+E Q+ L +D +KA
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 52/100 (52%)
Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
A+ LG A G+Y+KA E + KA++LD N AW +L Y + +KA+E Q+ L
Sbjct: 11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 579 YIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSN 618
+D +KA+ +KAI+D L +DP+N
Sbjct: 71 ELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G A +G Y AI + + L+ DP +A RG A Q + + AI D+ +A++ +P+
Sbjct: 50 GNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Query: 448 AGEAWKRRGQARAALG 463
+A + G A+ G
Sbjct: 110 NAKAKQNLGNAKQKQG 125
Score = 37.0 bits (84), Expect = 0.065, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCL 661
+KAI+ L +DP+N Y + Y+ G+Y++AI+ Y AL+L+ ++ + + +
Sbjct: 26 QKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGN 85
Query: 662 AFYQK 666
A+Y++
Sbjct: 86 AYYKQ 90
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 70/141 (49%)
Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
G + + + + AI + + ++++P+ E + G+ +G +AI+ L K + +
Sbjct: 12 GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71
Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
SA+ + G NF + AA++ L + L+ AY LGL S+GE+ KA EA+
Sbjct: 72 SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131
Query: 542 KAIQLDRNFLEAWGHLTQFYQ 562
K I + F+ A+ + Y+
Sbjct: 132 KTISIKPGFIRAYQSIGLAYE 152
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 63/133 (47%)
Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
G + G+ AI+ K L+ +PN+ + L + G N A+E L V LD
Sbjct: 12 GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71
Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575
+ AY LG A I E + A +A +AI L+ + +A+ L Y + +KA+E +
Sbjct: 72 SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131
Query: 576 QVLYIDKRFSKAY 588
+ + I F +AY
Sbjct: 132 KTISIKPGFIRAY 144
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%)
Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
E + Y +G + G++ A A+ K ++ D N +E L + Y D+ A+E L
Sbjct: 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESL 62
Query: 575 QQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
++ + +D ++AY + AI L + ++ + Y Y ++GE
Sbjct: 63 KKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE 122
Query: 635 YREAIKDYDAALDLE 649
+ +AI+ Y+ + ++
Sbjct: 123 HDKAIEAYEKTISIK 137
Score = 32.7 bits (73), Expect = 0.98, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 47/109 (43%)
Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431
++ K+ +V+ L G ++ G AI + + D EA G+A E
Sbjct: 30 KVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEK 89
Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP 480
+AAI AI N +A+ + G ++GE +AI+ K + +P
Sbjct: 90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 100/254 (39%)
Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
G+ AI + L+ P + + I A ++E A+ + A+Q NP
Sbjct: 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140
Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
G ALG EA KA+E +PN A G V + A+ V LD
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
AY LG L + +A A+L+A+ L N G+L Y + + A++
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260
Query: 575 QQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
++ + + F AY +A ++ L + P++ + L A+ G
Sbjct: 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320
Query: 635 YREAIKDYDAALDL 648
EA++ Y AL++
Sbjct: 321 IEEAVRLYRKALEV 334
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 90/222 (40%), Gaps = 8/222 (3%)
Query: 427 FQ-RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
FQ R L+ + T AI+ NP EA+ G G+ EAI+ AL +P+ D
Sbjct: 44 FQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103
Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
D AV+ + ++ + + + LG L ++G ++A+ +LKAI+
Sbjct: 104 YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163
Query: 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAI 605
NF AW +L + A+ ++ + +D F AY +A+
Sbjct: 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223
Query: 606 KDLSSGLGIDPS------NIECLYLRASCYH-AIGEYREAIK 640
L + P+ N+ C+Y AI YR AI+
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/223 (19%), Positives = 89/223 (39%)
Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
G+ A + + + ++ P + A G Q E+ AI F +A+ +P+ +A+
Sbjct: 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN 208
Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
G A+ +AL PN A + V ++ + A++ ++L
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
AY L AL G +AE+ + A++L ++ +L ++ N E+A+
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328
Query: 575 QQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPS 617
++ L + F+ A+ ++A+ + I P+
Sbjct: 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 56/107 (52%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
++ EAW G A G+ EAI+ KALE PN+A+ + G +K D++ A+E
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
++L N A+ LG A G+Y +A E + KA++L N EA
Sbjct: 67 QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 113
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 55/116 (47%)
Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
EA G A Q + + AI + +A++ P+ EAW G A G+ EAI+ KA
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531
LE PN+A+ + G +K D++ A+E ++L N A LG A G
Sbjct: 70 LELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 48/97 (49%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G A +G Y AI + + L+ P EA G A Q + + AI + +A++ P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
EAW G A G+ EAI+ KALE PN+A+
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 51/98 (52%)
Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
NSA+ + G +K D++ A+E ++L N A+ LG A G+Y +A E +
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
KA++L N EAW +L Y + ++A+E Q+ L
Sbjct: 67 QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 50/106 (47%)
Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
N EAW +L Y + ++A+E Q+ L + ++A+ +AI+
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
L + P+N E Y + Y+ G+Y EAI+ Y AL+L ++ E
Sbjct: 67 QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112
Score = 33.5 bits (75), Expect = 0.70, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL---- 658
+AI+ L + P+N E Y + Y+ G+Y EAI+ Y AL+L ++ E +
Sbjct: 27 EAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNA 86
Query: 659 --------QCLAFYQKEIALY 671
+ + +YQK + LY
Sbjct: 87 YYKQGDYDEAIEYYQKALELY 107
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 26/114 (22%)
Query: 613 GIDPSN-IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL------------Q 659
+DP N E Y + Y+ G+Y EAI+ Y AL+L ++ E + +
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 61
Query: 660 CLAFYQKEIALYTASKINSEFCWFDI------DGDIDPLFKEYWCK--RLHPKN 705
+ +YQK + LY N+ W+++ GD D EY+ K L+P N
Sbjct: 62 AIEYYQKALELYP----NNAEAWYNLGNAYYKQGDYDEAI-EYYQKALELYPNN 110
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 112/282 (39%), Gaps = 31/282 (10%)
Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------- 447
GK +A+ ++++ + A + RG Q +L+ A DF + ++SNPS
Sbjct: 74 GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133
Query: 448 ------AGEAWKRRGQARAALG--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
+ E + R QA A G + AI L K LE A++ R K +
Sbjct: 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP 193
Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
A+ DL A KL +N A+ + +G+++ + + ++LD++ + H Q
Sbjct: 194 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 253
Query: 560 FYQDLANSEKALECLQQVLYID--KRFSKAYXXXXXXXXXXXXXKK-------------- 603
+ E A E ++ Y D ++ K+
Sbjct: 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313
Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
AI+ S L ++P N+ L RA Y Y EAI+DY+ A
Sbjct: 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 99/240 (41%), Gaps = 30/240 (12%)
Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
+L A+S F A+ +P A+ RR A+G+S A+ DL+K ++ + + +R
Sbjct: 41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100
Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR- 548
G + K + A +D +K + S E K+A+ +K+ ++ R
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSN--------------PSENEEKEAQSQLIKSDEMQRL 146
Query: 549 --NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIK 606
L A+G + A+ L ++L + ++ +KAI
Sbjct: 147 RSQALNAFGS--------GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198
Query: 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQK 666
DL + + N E Y ++ Y+ +G++ ++ + L L+ D +C A Y++
Sbjct: 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK-----RCFAHYKQ 253
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 113/290 (38%), Gaps = 31/290 (10%)
Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
R + GK +A+ ++++ + A + RG Q +L+ A DF + ++SNP
Sbjct: 66 RATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125
Query: 447 S-------------AGEAWKRRGQARAALG--ESVEAIQDLSKALEFEPNSADILHERGI 491
S + E + R QA A G + AI L K LE A++ R
Sbjct: 126 SENEEKEAQSQLIKSDEXQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185
Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551
K + A+ DL A KL +N A+ + +G+++ + + ++LD++
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 245
Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYID--KRFSKAYXXXXXXXXXXXXXKK------ 603
+ H Q + E A E ++ Y D ++ K+
Sbjct: 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICHCF 305
Query: 604 --------AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
AI+ S L +P N+ L RA Y Y EAI+DY+ A
Sbjct: 306 SKDEKPVEAIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETA 355
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 19/210 (9%)
Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
G+ A G+ +A+ A++ +P++ + R V AA+ DL+ ++L +
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXD 92
Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575
+A G L G+ +AE+ K ++ + + N EK E
Sbjct: 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS---------------ENEEK--EAQS 135
Query: 576 QVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEY 635
Q++ D+ + AI L L + + E LRA C+ GE
Sbjct: 136 QLIKSDE--XQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP 193
Query: 636 REAIKDYDAALDLELDSMEKFVLQCLAFYQ 665
R+AI D AA L+ D+ E F +YQ
Sbjct: 194 RKAISDLKAASKLKNDNTEAFYKISTLYYQ 223
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
CNRA YS+L + ++DC++A+ +DP +AY G A S+L + EA++ ++K E
Sbjct: 49 FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527
A+ KA+E P +A R K ++ AV+D + +D AY +GLAL
Sbjct: 31 AVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90
Query: 528 SSIGEYKKAEEAHLKAIQLD 547
SS+ ++ +A + KA++LD
Sbjct: 91 SSLNKHVEAVAYYKKALELD 110
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 51/113 (45%)
Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
+ G Q+ + +A+ + + ++ +P R A + A+ D AI +
Sbjct: 17 TEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID 76
Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498
P+ +A+ R G A ++L + VEA+ KALE +P++ I K ++
Sbjct: 77 PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%)
Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
A+ L G K ++F AAV ++L+ N + A S +G Y A + +
Sbjct: 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581
AI +D + +A+G + L +A+ ++ L +D
Sbjct: 72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 110
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 52/109 (47%)
Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
NP K +G G+ +A++ ++A++ P A + R K +F A++
Sbjct: 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 71
Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
D C++L+ YT AL ++ +Y KA + + KA+ LD + EA
Sbjct: 72 DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
NRA CY++L + ++DC++ +QL+PT ++ Y K A A+ +A+ V++K +
Sbjct: 55 NRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112
Score = 30.4 bits (67), Expect = 5.4, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 52/108 (48%)
Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
P+ A ++ +G F+ D+ A++ + +K + ++ Y+ + + E++ A +
Sbjct: 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD 72
Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
+ IQL+ F++ + + + + KA++ Q+ L +D +A
Sbjct: 73 CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 112/290 (38%), Gaps = 31/290 (10%)
Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
R + GK +A+ +++ + A + RG Q +L+ A DF + ++SNP
Sbjct: 43 RATVFLAXGKSKAALPDLTKVIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102
Query: 447 S-------------AGEAWKRRGQARAAL--GESVEAIQDLSKALEFEPNSADILHERGI 491
S A E + R QA A + AI L K LE A++ R
Sbjct: 103 SEQEEKEAESQLVKADEXQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162
Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551
K + A+ DL A KL +N A+ + +G+++ + + ++LD++
Sbjct: 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 222
Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYID--KRFSKAYXXXXXXXXXXXXXKK------ 603
+ H Q + E A E ++ Y D ++ K+
Sbjct: 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICHCF 282
Query: 604 --------AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
AI+ S L +P N+ L RA Y Y EAI+DY+AA
Sbjct: 283 SKDEKPVEAIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAA 332
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 24/237 (10%)
Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
+L A+S F A+ +P A+ RR A G+S A+ DL+K + + + +R
Sbjct: 18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXDFTAARLQR 77
Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
G + K + A +D +K + S E K+AE +KA + R
Sbjct: 78 GHLLLKQGKLDEAEDDFKKVLKSN--------------PSEQEEKEAESQLVKADEXQRL 123
Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLS 609
+A L F D A+ A+ L ++L + ++ +KAI DL
Sbjct: 124 RSQA---LDAF--DGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 178
Query: 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQK 666
+ + N E Y ++ Y+ +G++ ++ + L L+ D +C A Y++
Sbjct: 179 AASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK-----RCFAHYKQ 230
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
++ EAW G A G+ EAI+ KALE +PN+A+ + G +K D++ A+E
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIG 531
++LD N A LG A G
Sbjct: 67 QKALELDPNNAEAKQNLGNAKQKQG 91
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
EA G A Q + + AI + +A++ +P+ EAW G A G+ EAI+ KA
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 476 LEFEPNSAD 484
LE +PN+A+
Sbjct: 70 LELDPNNAE 78
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
NSA+ + G +K D++ A+E ++LD N A+ LG A G+Y +A E +
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 541 LKAIQLDRNFLEA 553
KA++LD N EA
Sbjct: 67 QKALELDPNNAEA 79
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
A+ LG A G+Y +A E + KA++LD N EAW +L Y + ++A+E Q+ L
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 579 YIDKRFSKA 587
+D ++A
Sbjct: 71 ELDPNNAEA 79
Score = 36.6 bits (83), Expect = 0.077, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G A +G Y AI + + L+ DP EA G A Q + + AI + +A++ +P+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 448 AGEAWKRRGQARAALG 463
EA + G A+ G
Sbjct: 76 NAEAKQNLGNAKQKQG 91
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
+AI+ L +DP+N E Y + Y+ G+Y EAI+ Y AL+L+ ++ E
Sbjct: 27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78
Score = 30.4 bits (67), Expect = 5.8, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
N EAW +L Y + ++A+E Q+ L +D ++A+ +AI+
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 609 SSGLGIDPSNIE 620
L +DP+N E
Sbjct: 67 QKALELDPNNAE 78
Score = 29.6 bits (65), Expect = 8.5, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 613 GIDPSN-IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQK 666
+DP N E Y + Y+ G+Y EAI+ Y AL+L+ ++ E + A+Y++
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 56
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%)
Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
NP + K +G G+ A++ ++A++ +P +A + R K +F A++
Sbjct: 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD 68
Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
D C++LD + Y L ++ E+ KA+ A+ A+Q+D + EA
Sbjct: 69 DCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
NRA C ++L + + DCD ++LD ++ YI K A+ S ++ YE A
Sbjct: 52 NRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM----REWSKAQRAYEDA 107
Query: 134 LH 135
L
Sbjct: 108 LQ 109
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
+ EAW G A G+ EAI+ KALE +P SA+ + G +K D++ A+E
Sbjct: 1 GSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 60
Query: 507 SACVKLD 513
++LD
Sbjct: 61 QKALELD 67
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
EA G A Q + + AI + +A++ +P + EAW G A G+ EAI+ KA
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 476 LEFEPNS 482
LE +P S
Sbjct: 64 LELDPRS 70
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
LG A G+Y +A E + KA++LD EAW +L Y + ++A+E Q+ L +D
Sbjct: 9 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Query: 583 R 583
R
Sbjct: 69 R 69
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
SA+ + G +K D++ A+E ++LD + A+ LG A G+Y +A E +
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Query: 542 KAIQLD 547
KA++LD
Sbjct: 62 KALELD 67
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
+AI+ L +DP + E Y + Y+ G+Y EAI+ Y AL+L+
Sbjct: 21 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 67
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
G A +G Y AI + + L+ DP EA G A Q + + AI + +A++ +P
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 39 ARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQ 97
AR+E + + +W A++ ++ ++ E + NRA ++L I DC+KA++
Sbjct: 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201
Query: 98 LDPTLLQAYILKGCAFSALGRKEEALSV 125
DP ++AYI K A A+ AL
Sbjct: 202 KDPNFVRAYIRKATAQIAVKEYASALET 229
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%)
Query: 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493
A+ +TE I+ P + R A A L EAI D +KA+E +PN +
Sbjct: 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 217
Query: 494 FKFKDFNAAVEDLSACVKLDKE 515
K++ +A+E L A D E
Sbjct: 218 IAVKEYASALETLDAARTKDAE 239
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 67/170 (39%), Gaps = 33/170 (19%)
Query: 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477
L R A + E E AIS +A++ +K ++ A +G + + DL K +E
Sbjct: 41 LNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIE 100
Query: 478 F------EPNSADILHE-------------RGIVN--------------FKFKDFNAAVE 504
+ E +ADIL + VN F D+ AV+
Sbjct: 101 YYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK 160
Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
+ +K E+ Y+ AL+ + + +A KAI+ D NF+ A+
Sbjct: 161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 210
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 39 ARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQ 97
AR+E + + +W A++ ++ ++ E + NRA ++L I DC+KA++
Sbjct: 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 98 LDPTLLQAYILKGCAFSALGRKEEAL 123
DP ++AYI K A A+ AL
Sbjct: 67 KDPNFVRAYIRKATAQIAVKEYASAL 92
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%)
Query: 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493
A+ +TE I+ P + R A A L EAI D +KA+E +PN +
Sbjct: 23 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82
Query: 494 FKFKDFNAAVEDLSACVKLDKE 515
K++ +A+E L A D E
Sbjct: 83 IAVKEYASALETLDAARTKDAE 104
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 81/235 (34%), Gaps = 27/235 (11%)
Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
L+ GI + K + A F + DP + A IG + A + E + AIS +T A +
Sbjct: 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436
Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
+ G LG + A + L + +L+E G+V F D A+
Sbjct: 437 FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN 496
Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
+ L K+ +S ++ + W +L Y+ L
Sbjct: 497 HFQNALLLVKKTQSN---------------------------EKPWAATWANLGHAYRKL 529
Query: 565 ANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNI 619
+ A++ L Q L + + + AI L L I P+ I
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 9/210 (4%)
Query: 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF 478
+GRG+ + E A FT+AI+ N + +++ E A+ KALE
Sbjct: 30 MGRGSEFG---DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL 86
Query: 479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
+ ++A + G V + + A + ++ EN + LG L + + K A
Sbjct: 87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALP 146
Query: 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANS---EKALECLQQVLYIDKRFSKAYXXXXXXX 595
+A++L+ N EA QF LAN ++AL V D + A+
Sbjct: 147 YLQRAVELNENDTEA---RFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203
Query: 596 XXXXXXKKAIKDLSSGLGIDPSNIECLYLR 625
+KA++ L + I P ++ L+ +
Sbjct: 204 AYKENREKALEMLDKAIDIQPDHMLALHAK 233
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
R G+ NEG A+S F + ++DP + +A G A++ E A+ +AI
Sbjct: 162 RFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221
Query: 444 SNP 446
P
Sbjct: 222 IQP 224
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
EA G A + L+ A+S F + +P +A+ G A +A++ L KA
Sbjct: 160 EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219
Query: 476 LEFEPNSADILHERGIV 492
++ +P+ LH + ++
Sbjct: 220 IDIQPDHMLALHAKKLL 236
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 2/137 (1%)
Query: 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
S G+Y+KA EA KAI+ ++ + + + E+AL + L +D + A
Sbjct: 34 SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATA 93
Query: 588 YXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
Y K+A L N + Y+ + + + + A+ A++
Sbjct: 94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE 153
Query: 648 L-ELDSMEKFVL-QCLA 662
L E D+ +F CLA
Sbjct: 154 LNENDTEARFQFGMCLA 170
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
RG +LG A D S+AL P+ ++ + GI + +F+AA E + ++LD
Sbjct: 49 RGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108
Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALE 572
A+ G+AL G K A++ L Q D N F W +L + Q L + ++A E
Sbjct: 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE--QKL-DEKQAKE 165
Query: 573 CLQQ 576
L+Q
Sbjct: 166 VLKQ 169
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
GI G + +A FD +L+ DP Y A + RG A + + A D Q +P+
Sbjct: 84 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 57/273 (20%), Positives = 104/273 (38%), Gaps = 34/273 (12%)
Query: 406 QILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
Q +E+P+ +P+ G R + +L A+ F A+Q +P EAW+ G +A
Sbjct: 14 QFEEENPLRDHPQPF-EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 72
Query: 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523
+ + AI L + LE +P++ L + F AC L + Y
Sbjct: 73 QELLAISALRRCLELKPDNQTALMALAV------SFTNESLQRQACETLRDWLRYTPAYA 126
Query: 524 GL---------------------ALSSIGEYKKAEEAHLKAIQLDRNFL--EAWGHLTQF 560
L +L S + + +E L A++LD + + L
Sbjct: 127 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 186
Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIE 620
+ +KA++C L + + ++A+ L + P I
Sbjct: 187 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 246
Query: 621 CLY-LRASCYHAIGEYREAIKDYDAALDLELDS 652
Y L SC + +G +REA++ + AL+++ S
Sbjct: 247 SRYNLGISCIN-LGAHREAVEHFLEALNMQRKS 278
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 13/143 (9%)
Query: 403 IFDQILKEDP--MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460
+F ++ DP + P+ G G E + A+ FT A+ P+ W + G A
Sbjct: 163 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA 222
Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK--- 517
+S EA+ +ALE +P + GI AVE + + ++++
Sbjct: 223 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 282
Query: 518 --------SAYTYLGLALSSIGE 532
+ ++ L LALS +G+
Sbjct: 283 GEGGAMSENIWSTLRLALSMLGQ 305
Score = 36.6 bits (83), Expect = 0.067, Method: Composition-based stats.
Identities = 48/223 (21%), Positives = 85/223 (38%), Gaps = 22/223 (9%)
Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
G+ ++ EG +A+ +F+ +++DP + EA GT +A + AIS ++
Sbjct: 28 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 87
Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH-------------ERGI 491
P A + +A + L L + P A ++ + I
Sbjct: 88 KPDNQTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 147
Query: 492 VNFKFKD--FNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
+ D F E A V+LD + LG+ + GEY KA + A+ +
Sbjct: 148 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 207
Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVL-----YIDKRFS 585
N W L + SE+A+ ++ L YI R++
Sbjct: 208 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 250
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%)
Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
S G A + +Y+ AI ++ Q L P P L R A + + E A D A +
Sbjct: 16 SEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD 75
Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
P +AW R G AR + + A + K +E E N +RG+ K K
Sbjct: 76 PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRK 127
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%)
Query: 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512
K G A A E +AI ++AL P + L R A ED +
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
D + A++ LGLA + +YK A+EA+ K I+ + N
Sbjct: 75 DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 50 RNWSKAIRILDSLL--AQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
+ +SKAI + L A + I + NRA YS H+ D + A +DP +A+
Sbjct: 25 KEYSKAIDLYTQALSIAPANPIY-LSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83
Query: 108 LKGCAFSALGRKEEALSVWEKGYEHALHQSAD-LKQFLE 145
G A + + A +EKG E + +D +K+ LE
Sbjct: 84 RLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 71/165 (43%), Gaps = 5/165 (3%)
Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
+G A+ ++ + L+ P + A + Q +L+ A+ + EAI+ +P+ +A+
Sbjct: 22 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81
Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
G + + A+Q ++A++ P AD ++ + A+ +KL
Sbjct: 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141
Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAI-----QLDRNFLEA 553
+ AY L L + ++ +E K + QL++N L +
Sbjct: 142 PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPS 186
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/176 (17%), Positives = 75/176 (42%)
Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
P AD L+ + + + AV +++ E +A++ L L G+ ++A
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXX 599
+ +AI++ F +A+ ++ +++ + + AL+C + + I+ F+ A+
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 600 XXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655
+AI + L + P + A C + ++ + + + + D +EK
Sbjct: 126 NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 38.9 bits (89), Expect = 0.016, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 13/143 (9%)
Query: 403 IFDQILKEDP--MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460
+F ++ DP + P+ G G E + A+ FT A+ P+ W + G A
Sbjct: 140 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA 199
Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK--- 517
+S EA+ +ALE +P + GI AVE + + ++++
Sbjct: 200 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 259
Query: 518 --------SAYTYLGLALSSIGE 532
+ ++ L LALS +G+
Sbjct: 260 GEGGAMSENIWSTLRLALSMLGQ 282
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 53/255 (20%), Positives = 95/255 (37%), Gaps = 31/255 (12%)
Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
G R + +L A+ F A+Q +P EAW+ G +A + + AI L + LE +P+
Sbjct: 8 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 67
Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL---------------- 525
+ L + F AC L + Y L
Sbjct: 68 NQTALMALAV------SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 121
Query: 526 -----ALSSIGEYKKAEEAHLKAIQLDRNFL--EAWGHLTQFYQDLANSEKALECLQQVL 578
+L S + + +E L A++LD + + L + +KA++C L
Sbjct: 122 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 181
Query: 579 YIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLY-LRASCYHAIGEYRE 637
+ + ++A+ L + P I Y L SC + +G +RE
Sbjct: 182 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAHRE 240
Query: 638 AIKDYDAALDLELDS 652
A++ + AL+++ S
Sbjct: 241 AVEHFLEALNMQRKS 255
Score = 36.2 bits (82), Expect = 0.098, Method: Composition-based stats.
Identities = 48/223 (21%), Positives = 85/223 (38%), Gaps = 22/223 (9%)
Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
G+ ++ EG +A+ +F+ +++DP + EA GT +A + AIS ++
Sbjct: 5 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 64
Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH-------------ERGI 491
P A + +A + L L + P A ++ + I
Sbjct: 65 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 124
Query: 492 VNFKFKD--FNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
+ D F E A V+LD + LG+ + GEY KA + A+ +
Sbjct: 125 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 184
Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVL-----YIDKRFS 585
N W L + SE+A+ ++ L YI R++
Sbjct: 185 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 227
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 60/121 (49%)
Query: 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519
AA E E L ALE PN A + G++ ++++A +L V+L ++
Sbjct: 149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208
Query: 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY 579
+ LG L++ ++A +A+ +A+ ++ ++ ++ Y +++ + A + L + +Y
Sbjct: 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268
Query: 580 I 580
+
Sbjct: 269 M 269
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 60/121 (49%)
Query: 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519
AA E E L ALE PN A + G++ ++++A +L V+L ++
Sbjct: 149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208
Query: 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY 579
+ LG L++ ++A +A+ +A+ ++ ++ ++ Y +++ + A + L + +Y
Sbjct: 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268
Query: 580 I 580
+
Sbjct: 269 M 269
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 91/251 (36%), Gaps = 28/251 (11%)
Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
G R + +L I AI +P EAW+ G +A AI L + LE +PN
Sbjct: 72 GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN 131
Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL--------GLAL------ 527
+ L + A E L +K + + Y YL GL
Sbjct: 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPK----YKYLVKNKKGSPGLTRRMSKSP 187
Query: 528 --SSIGEYKKA---EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
SS+ E K E AH +D + G L + +A++ L +
Sbjct: 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEF---NRAIDAFNAALTVRP 244
Query: 583 RFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLY-LRASCYHAIGEYREAIKD 641
+ ++A++ + L I P I Y L SC + +G YREA+ +
Sbjct: 245 EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN-LGAYREAVSN 303
Query: 642 YDAALDLELDS 652
+ AL L+ S
Sbjct: 304 FLTALSLQRKS 314
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 43/108 (39%)
Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470
D + P+ G G E AI F A+ P W R G A S EA++
Sbjct: 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268
Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518
++ALE +P + GI + AV + + L +++++
Sbjct: 269 AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN 316
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 18/176 (10%)
Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
E G+ K D + + A + D + A+ +LG+ + + A A + ++L
Sbjct: 70 EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ 129
Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQ---------QVLYIDKRFSKAYXXXXXXXXXX 598
N L+A L Y + ++ + A E L+ + L +K+ S
Sbjct: 130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD 189
Query: 599 XXXKKAIKDL------SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
+ +K+L +G IDP L +H GE+ AI ++AAL +
Sbjct: 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGL---GVLFHLSGEFNRAIDAFNAALTV 242
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 13/143 (9%)
Query: 403 IFDQILKEDP--MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460
+F ++ DP + P+ G G E + A+ FT A+ P+ W + G A
Sbjct: 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA 262
Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA- 519
+S EA+ +ALE +P + GI AVE + + ++++
Sbjct: 263 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 322
Query: 520 ----------YTYLGLALSSIGE 532
++ L LALS +G+
Sbjct: 323 GEGGAMSENIWSTLRLALSMLGQ 345
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 104/270 (38%), Gaps = 34/270 (12%)
Query: 406 QILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
Q +E+P+ +P+ G R + +L A+ F A+Q +P EAW+ G +A
Sbjct: 54 QFEEENPLRDHPQP-FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112
Query: 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYT 521
+ + AI L + LE +P++ L + F AC L AY
Sbjct: 113 QELLAISALRRCLELKPDNQTALMALAV------SFTNESLQRQACEILRDWLRYTPAYA 166
Query: 522 YLGL-------------------ALSSIGEYKKAEEAHLKAIQLDRNFL--EAWGHLTQF 560
+L +L S + + +E L A++LD + + L
Sbjct: 167 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 226
Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIE 620
+ +KA++C L + + ++A+ L + P I
Sbjct: 227 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 286
Query: 621 CLY-LRASCYHAIGEYREAIKDYDAALDLE 649
Y L SC + +G +REA++ + AL+++
Sbjct: 287 SRYNLGISCIN-LGAHREAVEHFLEALNMQ 315
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 26/222 (11%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G+ ++ EG +A+ +F+ +++DP + EA GT +A + AIS ++ P
Sbjct: 71 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 130
Query: 448 AGEAWKRRGQARAALGESV--EAIQDLSKALEFEPNSADIL-------------HERGIV 492
A A + ES+ +A + L L + P A ++ + I+
Sbjct: 131 NQTALM--ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 188
Query: 493 NFKFKD--FNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
D F E A V+LD + LG+ + GEY KA + A+ +
Sbjct: 189 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 248
Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVL-----YIDKRFS 585
N W L + SE+A+ ++ L YI R++
Sbjct: 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 13/143 (9%)
Query: 403 IFDQILKEDP--MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460
+F ++ DP + P+ G G E + A+ FT A+ P+ W + G A
Sbjct: 154 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA 213
Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA- 519
+S EA+ +ALE +P + GI AVE + + ++++
Sbjct: 214 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 273
Query: 520 ----------YTYLGLALSSIGE 532
++ L LALS +G+
Sbjct: 274 GEGGAMSENIWSTLRLALSMLGQ 296
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 107/266 (40%), Gaps = 26/266 (9%)
Query: 406 QILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
Q +E+P+ +P+ G R + +L A+ F A+Q +P EAW+ G +A
Sbjct: 5 QFEEENPLRDHPQP-FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 63
Query: 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN-AAVEDLSACVKLDKENKSAYT- 521
+ + AI L + LE +P++ L V+F + A E L ++ T
Sbjct: 64 QELLAISALRRCLELKPDNQTALMALA-VSFTNESLQRQACEILRDWLRYTPAYAHLVTP 122
Query: 522 ---------------YLGLALSSIGEYKKAEEAHLKAIQLDRNFL--EAWGHLTQFYQDL 564
LG +L S + + +E L A++LD + + L +
Sbjct: 123 AEEGAGGAGLGPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 181
Query: 565 ANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLY- 623
+KA++C L + + ++A+ L + P I Y
Sbjct: 182 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 241
Query: 624 LRASCYHAIGEYREAIKDYDAALDLE 649
L SC + +G +REA++ + AL+++
Sbjct: 242 LGISCIN-LGAHREAVEHFLEALNMQ 266
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 26/222 (11%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G+ ++ EG +A+ +F+ +++DP + EA GT +A + AIS ++ P
Sbjct: 22 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 81
Query: 448 AGEAWKRRGQARAALGESV--EAIQDLSKALEFEPNSADIL-------------HERGIV 492
A A + ES+ +A + L L + P A ++ + I+
Sbjct: 82 NQTALM--ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 139
Query: 493 NFKFKD--FNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
D F E A V+LD + LG+ + GEY KA + A+ +
Sbjct: 140 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 199
Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVL-----YIDKRFS 585
N W L + SE+A+ ++ L YI R++
Sbjct: 200 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 241
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 13/143 (9%)
Query: 403 IFDQILKEDP--MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460
+F ++ DP + P+ G G E + A+ FT A+ P+ W + G A
Sbjct: 163 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA 222
Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA- 519
+S EA+ +ALE +P + GI AVE + + ++++
Sbjct: 223 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 282
Query: 520 ----------YTYLGLALSSIGE 532
++ L LALS +G+
Sbjct: 283 GEGGAMSENIWSTLRLALSMLGQ 305
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 107/266 (40%), Gaps = 26/266 (9%)
Query: 406 QILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
Q +E+P+ +P+ G R + +L A+ F A+Q +P EAW+ G +A
Sbjct: 14 QFEEENPLRDHPQP-FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 72
Query: 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN-AAVEDLSACVKLDKENKSAYT- 521
+ + AI L + LE +P++ L V+F + A E L ++ T
Sbjct: 73 QELLAISALRRCLELKPDNQTALMALA-VSFTNESLQRQACEILRDWLRYTPAYAHLVTP 131
Query: 522 ---------------YLGLALSSIGEYKKAEEAHLKAIQLDRNFL--EAWGHLTQFYQDL 564
LG +L S + + +E L A++LD + + L +
Sbjct: 132 AEEGAGGAGLGPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 190
Query: 565 ANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLY- 623
+KA++C L + + ++A+ L + P I Y
Sbjct: 191 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 250
Query: 624 LRASCYHAIGEYREAIKDYDAALDLE 649
L SC + +G +REA++ + AL+++
Sbjct: 251 LGISCIN-LGAHREAVEHFLEALNMQ 275
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 26/222 (11%)
Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
G+ ++ EG +A+ +F+ +++DP + EA GT +A + AIS ++ P
Sbjct: 31 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 90
Query: 448 AGEAWKRRGQARAALGESV--EAIQDLSKALEFEPNSADIL-------------HERGIV 492
A A + ES+ +A + L L + P A ++ + I+
Sbjct: 91 NQTALM--ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 148
Query: 493 NFKFKD--FNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
D F E A V+LD + LG+ + GEY KA + A+ +
Sbjct: 149 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 208
Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVL-----YIDKRFS 585
N W L + SE+A+ ++ L YI R++
Sbjct: 209 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 250
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 36.6 bits (83), Expect = 0.084, Method: Composition-based stats.
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 17/186 (9%)
Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
L G+ G+Y +A+++F++ LKE+P PEAL + + A+ + +
Sbjct: 9 LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68
Query: 445 NPSAGEAWKRRGQARAALGESVE-----------AIQDLSKALEFEPNSADILHERGIVN 493
P + +A AL E A+ L A P A + +RG+V
Sbjct: 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVY 128
Query: 494 FKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLAL----SSIGEYKKAEEAHLKAIQLD 547
+ + A L + L+ E +SA L L++ ++ +Y KA E K + L
Sbjct: 129 ALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLR 188
Query: 548 RNFLEA 553
+ A
Sbjct: 189 VRYASA 194
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
NRA CY +++ + + DC +AL+LD ++A+ G + +EA++ ++ Y A
Sbjct: 43 NRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102
Query: 134 LHQ 136
Q
Sbjct: 103 KEQ 105
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
NRA CY +++ + + DC +AL+LD ++A+ G + +EA++ ++ Y A
Sbjct: 48 NRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107
Query: 134 LHQ 136
Q
Sbjct: 108 KEQ 110
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522
+S E KAL+ + N++ + + RG +NF ++++ A +D +LD EN + Y
Sbjct: 284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN--IFPY 341
Query: 523 LGLA 526
+ LA
Sbjct: 342 IQLA 345
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527
AI+ +KALE + N+ L RG + DF A D ++L NK+A T L +
Sbjct: 215 AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274
Query: 528 SSI 530
I
Sbjct: 275 QRI 277
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527
AI+ +KALE + N+ L RG + DF A D ++L NK+A T L +
Sbjct: 215 AIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274
Query: 528 SSI 530
I
Sbjct: 275 QRI 277
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 39 ARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQL 98
A ++ K+ S + + ++ AQ+ + N A C+ +L+ I C+KAL+L
Sbjct: 166 ALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225
Query: 99 DPTLLQAYILKGCAFSAL 116
D + +G A A+
Sbjct: 226 DSNNEKGLFRRGEAHLAV 243
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 37 ITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKAL 96
+ A I+ K+ S + +S ++S+ + N A CY +L + + CDKAL
Sbjct: 285 VQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344
Query: 97 QLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE-HALHQSADLKQFL 144
LD + +G A + E A +EK E + +++A L+ F+
Sbjct: 345 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFM 393
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
+Y A+ D+ L D + L RG A+ E E+A DF + ++ NP
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWE 127
NR+ Y + E + + + D +A++LD ++ Y + + ALG+ AL +E
Sbjct: 60 NRSLAYLRTECYGYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 113
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
A+ D + + +D I+ Y RA+ A+G++R A++DY+ + ++
Sbjct: 74 ALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 119
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWE 127
NR+ Y + E + + + D +A++LD ++ Y + + ALG+ AL +E
Sbjct: 52 NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 105
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
A+ D + + +D I+ Y RA+ A+G++R A++DY+ + ++
Sbjct: 66 ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 111
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524
S E + KA++ P + RG + F +D+ A ED L+ EN Y L
Sbjct: 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 351
Query: 525 LALSSIGEYKKAE 537
L G++ ++E
Sbjct: 352 CLLYKQGKFTESE 364
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
Y L RG + AI + AI+ +P+ + + G+ + I+ +
Sbjct: 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 83
Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
KALE +P+ + L R N +F A+ DLS
Sbjct: 84 KALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524
S E + KA++ P + RG + F +D+ A ED L+ EN Y L
Sbjct: 288 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 347
Query: 525 LALSSIGEYKKAE 537
L G++ ++E
Sbjct: 348 CLLYKQGKFTESE 360
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
Y L RG + AI + AI+ +P+ + + G+ + I+ +
Sbjct: 20 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 79
Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
KALE +P+ + L R N +F A+ DLS
Sbjct: 80 KALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 115
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEA 468
K P+ ++ G + + + A+ EA++ +PS +A RR Q L E +A
Sbjct: 267 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQA 326
Query: 469 IQDLSKALEFEPNSADILHE 488
+ DL KA E P I E
Sbjct: 327 LADLKKAQEIAPEDKAIQAE 346
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
L IDPSN + LY RA + + EY +A+ D A ++
Sbjct: 300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%)
Query: 37 ITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKAL 96
+ A I+ K+ S + +S ++S+ + N A CY +L + + CDKAL
Sbjct: 285 MQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344
Query: 97 QLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
LD + +G A + E A +EK
Sbjct: 345 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEK 376
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
+Y A+ D+ L D + L RG A+ E E+A DF + ++ NP
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527
A++ KA E +P + + + V F+ D+N E +++ +EN+ Y + A
Sbjct: 23 ALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRMIAYAY 82
Query: 528 SSIGEYKKAEEAHLKAIQL 546
+ IG EE + AI
Sbjct: 83 ARIGNSYFKEEKYKDAIHF 101
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 3/154 (1%)
Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431
++ + + VD L GIA V G + ++ L + P + G ++
Sbjct: 33 QVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY 92
Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
+ A+ + ++NP R G A LG EAI AL PN + R I
Sbjct: 93 DLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKV--HRAI 150
Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525
F ++ E L K ++ ++ A L L
Sbjct: 151 A-FSYEQMGRHEEALPHFKKANELDEGASVELAL 183
Score = 30.4 bits (67), Expect = 5.9, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 60/161 (37%)
Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
+GI+ G+Y+ A+ + +Q+ D + + G A ++ ++ P
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
+ G + + A+ L K E P + ++ G+ F+ A++
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSF 133
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
+ L + + + +G +++A KA +LD
Sbjct: 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527
A++ KA E +P + + + V F+ D+N E +++ +EN+ Y + A
Sbjct: 23 ALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82
Query: 528 SSIGEYKKAEEAHLKAIQL 546
+ IG EE + AI
Sbjct: 83 ARIGNSYFKEEKYKDAIHF 101
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 486 LHERGIVN--FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543
L E+ + N +K KDF+ A++ +LD N + T G+Y K E KA
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64
Query: 544 IQLDRNFLEAWGHLTQFYQDLANS 567
I++ R E + + + Y + NS
Sbjct: 65 IEVGRENREDYRQIAKAYARIGNS 88
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527
A++ KA E +P + + + V F+ D+N E +++ +EN+ Y + A
Sbjct: 23 ALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82
Query: 528 SSIGEYKKAEEAHLKAIQL 546
+ IG EE + AI
Sbjct: 83 ARIGNSYFKEEKYKDAIHF 101
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 486 LHERGIVN--FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543
L E+ + N +K KDF+ A++ +LD N + T G+Y K E KA
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64
Query: 544 IQLDRNFLEAWGHLTQFYQDLANS 567
I++ R E + + + Y + NS
Sbjct: 65 IEVGRENREDYRQIAKAYARIGNS 88
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWE 127
NR+ Y + E + + + D +A++LD ++ Y + + ALG+ AL +E
Sbjct: 45 NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 98
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
A+ D + + +D I+ Y RA+ A+G++R A++DY+ + ++
Sbjct: 59 ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 104
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 3/154 (1%)
Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431
++ + + VD L GIA V G + ++ L + P + G ++
Sbjct: 33 QVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY 92
Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
+ A+ + ++NP R G A LG EAI AL PN + R I
Sbjct: 93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV--HRAI 150
Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525
F ++ E L K ++ ++ A L L
Sbjct: 151 A-FSYEQMGRHEEALPHFKKANELDEGASVELAL 183
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 60/161 (37%)
Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
+GI+ G+Y+ A+ + +Q+ D + + G A ++ ++ P
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
+ G + + A+ L K E P + ++ G+ F+ A++
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
+ L + + + +G +++A KA +LD
Sbjct: 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 428 QRELEAAISDFTEAIQSNP-SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL 486
Q ++E A+ E +Q+ P EA+ G A LG+ +A+ + A+E P+S +
Sbjct: 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72
Query: 487 HER---GIVNFKFKDFNAAVE 504
+ I+NF KD +E
Sbjct: 73 ARKMVMDILNFYNKDMYNQLE 93
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 3/154 (1%)
Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431
++ + + VD L GIA V G + ++ L + P + G ++
Sbjct: 33 QVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY 92
Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
+ A+ + ++NP R G A LG EAI AL PN + R I
Sbjct: 93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV--HRAI 150
Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525
F ++ E L K ++ ++ A L L
Sbjct: 151 A-FSYEQMGRHEEALPHFKKANELDEGASVELAL 183
Score = 30.0 bits (66), Expect = 7.0, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 60/161 (37%)
Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
+GI+ G+Y+ A+ + +Q+ D + + G A ++ ++ P
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
+ G + + A+ L K E P + ++ G+ F+ A++
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
+ L + + + +G +++A KA +LD
Sbjct: 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 35/197 (17%), Positives = 78/197 (39%), Gaps = 34/197 (17%)
Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
+GI+ G+Y+ A+ + +Q+ D AF E+ +
Sbjct: 14 KGISHAKAGRYSEAVVMLEQVYDAD--------------AFDVEVALHL----------- 48
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
G A G + L +++ P++ + G+ + + ++ AV L
Sbjct: 49 ---------GIAYVKTGAVDRGTELLERSIADAPDNIKVATVLGLTYVQVQKYDLAVPLL 99
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
+ + N + LG+AL ++G + +A ++ A+ L N + + Y+ + +
Sbjct: 100 VKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGS 159
Query: 567 SEKALECLQQVLYIDKR 583
E+AL ++ +D+R
Sbjct: 160 HEEALPHFKKANELDER 176
>pdb|3BE8|A Chain A, Crystal Structure Of The Synaptic Protein Neuroligin 4
pdb|3BE8|B Chain B, Crystal Structure Of The Synaptic Protein Neuroligin 4
pdb|2WQZ|A Chain A, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2WQZ|B Chain B, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2XB6|A Chain A, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
pdb|2XB6|B Chain B, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
Length = 588
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 874 SEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKAD 923
+E F+ F + M+ A V+ Y+ N+A+T D + V +D K++H K +
Sbjct: 474 TELFSCNFSKNDVML--SAVVMTYWTNFAKTGDPNQPVPQDTKFIHTKPN 521
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
K KD+ A++ S +K+DK N A LG+A G ++A+E KA L+ N L+
Sbjct: 100 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157
>pdb|3VKF|A Chain A, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|B Chain B, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 585
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 874 SEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKAD 923
+E F F + M+ A V+ Y+ N+A+T D + V +D K++H K +
Sbjct: 488 TELFPCNFSKNDVML--SAVVMTYWTNFAKTGDPNQPVPQDTKFIHTKPN 535
>pdb|2CIO|B Chain B, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 121
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 438 FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
FT ++SNP+ G W R G A L + AIQ SK P+ H R +V
Sbjct: 23 FTIELESNPTTGYTWLRSGLAGTELSDCTFAIQ--SKFNNRAPHDNHKNHRRLLV 75
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 74 NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
NR+ Y++ ++ D K + L P + Y K A L R EEA +E+G +H
Sbjct: 43 NRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101
>pdb|3BIW|A Chain A, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|B Chain B, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|C Chain C, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|D Chain D, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIX|A Chain A, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|B Chain B, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|C Chain C, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|D Chain D, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
Length = 574
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 874 SEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKAD 923
+E F F + M+ A V+ Y+ N+A+T D + V +D K++H K +
Sbjct: 471 TELFPCNFSKNDVML--SAVVMTYWTNFAKTGDPNQPVPQDTKFIHTKPN 518
>pdb|3B3Q|A Chain A, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|B Chain B, Crystal Structure Of A Synaptic Adhesion Complex
Length = 577
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 874 SEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKAD 923
+E F F + M+ A V+ Y+ N+A+T D + V +D K++H K +
Sbjct: 483 TELFPCNFSKNDVML--SAVVMTYWTNFAKTGDPNQPVPQDTKFIHTKPN 530
>pdb|3BL8|A Chain A, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
pdb|3BL8|B Chain B, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
pdb|3BL8|C Chain C, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
pdb|3BL8|D Chain D, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
Length = 580
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 888 ILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKADDIIDLSEDVVGEDF 937
++ A V+ Y+ N+A+T D + V +D K++H K + E+VV F
Sbjct: 489 VMLSAVVMTYWTNFAKTGDPNQPVPQDTKFIHTKPNRF----EEVVWSKF 534
>pdb|1TME|3 Chain 3, Three-Dimensional Structure Of Theiler Virus
Length = 236
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 929 SEDVVGEDFWLATWCNS--TAFEGKQLEGTRITLVKMGESGYDFAIRTPCTPSRW 981
S + D W+ W + T G + +TLV G+ DF +R P +P++W
Sbjct: 178 SATIASVDGWVTVWQLTPLTYPSGTPVNSDILTLVSAGD---DFTLRMPISPTKW 229
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
+Y AI + +L E+ P+AL RG A+A ++++A DF +A + P
Sbjct: 245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,266,270
Number of Sequences: 62578
Number of extensions: 1079079
Number of successful extensions: 2976
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2593
Number of HSP's gapped (non-prelim): 345
length of query: 1050
length of database: 14,973,337
effective HSP length: 109
effective length of query: 941
effective length of database: 8,152,335
effective search space: 7671347235
effective search space used: 7671347235
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)