Query 001578
Match_columns 1050
No_of_seqs 1273 out of 4754
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:17:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 4.1E-42 8.8E-47 376.2 32.4 444 43-703 55-499 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 6.6E-40 1.4E-44 359.0 31.4 409 43-661 89-498 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 5.7E-35 1.2E-39 358.3 56.4 439 35-654 126-577 (615)
4 KOG0547 Translocase of outer m 100.0 1.3E-36 2.8E-41 327.0 33.8 437 33-654 112-572 (606)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 7.7E-31 1.7E-35 338.0 55.7 539 41-698 130-673 (899)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 2E-30 4.3E-35 334.2 59.1 309 370-687 590-898 (899)
7 PRK11447 cellulose synthase su 100.0 3.3E-29 7.2E-34 326.7 58.8 97 41-137 33-146 (1157)
8 PRK11447 cellulose synthase su 100.0 2E-29 4.3E-34 328.8 56.5 318 369-693 291-704 (1157)
9 TIGR00990 3a0801s09 mitochondr 100.0 4.9E-29 1.1E-33 305.9 50.9 262 428-696 307-578 (615)
10 KOG0548 Molecular co-chaperone 100.0 2E-30 4.3E-35 284.8 31.5 475 37-644 3-485 (539)
11 PRK15174 Vi polysaccharide exp 100.0 4.5E-27 9.7E-32 287.7 48.2 301 381-701 110-417 (656)
12 PRK09782 bacteriophage N4 rece 100.0 1.9E-25 4E-30 278.6 56.7 238 448-696 476-713 (987)
13 PRK15174 Vi polysaccharide exp 100.0 4.1E-26 9E-31 279.2 43.2 318 369-694 64-386 (656)
14 KOG2002 TPR-containing nuclear 100.0 3.8E-25 8.2E-30 256.8 45.7 460 43-672 277-769 (1018)
15 PRK09782 bacteriophage N4 rece 100.0 3.6E-25 7.8E-30 276.1 46.4 282 402-694 462-745 (987)
16 KOG2002 TPR-containing nuclear 100.0 4.9E-25 1.1E-29 255.9 43.8 324 365-696 360-752 (1018)
17 PRK10049 pgaA outer membrane p 100.0 6.8E-25 1.5E-29 274.1 47.5 397 47-696 26-463 (765)
18 PRK10049 pgaA outer membrane p 99.9 5.8E-23 1.3E-27 256.8 45.4 196 460-655 248-463 (765)
19 KOG1126 DNA-binding cell divis 99.9 1.5E-24 3.3E-29 244.3 27.5 300 387-693 325-624 (638)
20 KOG0547 Translocase of outer m 99.9 5.9E-24 1.3E-28 229.7 29.4 311 381-697 115-540 (606)
21 KOG1126 DNA-binding cell divis 99.9 3.7E-24 8.1E-29 241.2 24.6 284 371-654 343-626 (638)
22 PRK11788 tetratricopeptide rep 99.9 3.5E-22 7.6E-27 232.4 38.0 309 380-694 34-356 (389)
23 KOG2003 TPR repeat-containing 99.9 3.2E-22 7E-27 212.9 33.6 279 378-656 416-697 (840)
24 KOG1173 Anaphase-promoting com 99.9 3.1E-21 6.7E-26 213.1 37.2 278 377-654 240-524 (611)
25 KOG0624 dsRNA-activated protei 99.9 1.3E-20 2.7E-25 195.5 34.5 319 41-588 43-378 (504)
26 PRK14574 hmsH outer membrane p 99.9 8.3E-19 1.8E-23 215.2 50.6 442 37-696 35-520 (822)
27 KOG0624 dsRNA-activated protei 99.9 1.4E-20 3.1E-25 195.0 29.2 315 375-696 32-377 (504)
28 PRK11788 tetratricopeptide rep 99.9 4.7E-20 1E-24 214.6 35.9 274 415-696 35-318 (389)
29 KOG2003 TPR repeat-containing 99.9 2.7E-19 5.8E-24 190.8 37.5 264 416-686 420-686 (840)
30 KOG1155 Anaphase-promoting com 99.9 4.8E-20 1E-24 198.8 31.9 309 381-696 227-543 (559)
31 KOG0548 Molecular co-chaperone 99.9 3.7E-20 7.9E-25 204.4 31.7 319 370-696 25-462 (539)
32 KOG1173 Anaphase-promoting com 99.9 6E-20 1.3E-24 203.0 32.8 258 371-628 268-532 (611)
33 KOG1155 Anaphase-promoting com 99.9 6.8E-20 1.5E-24 197.6 28.8 275 377-651 258-539 (559)
34 KOG0495 HAT repeat protein [RN 99.9 3.9E-18 8.5E-23 190.0 43.0 323 378-701 513-858 (913)
35 KOG2076 RNA polymerase III tra 99.9 5E-18 1.1E-22 197.2 39.9 299 380-678 206-544 (895)
36 PF13429 TPR_15: Tetratricopep 99.8 7E-21 1.5E-25 210.6 13.5 264 383-648 10-277 (280)
37 KOG1174 Anaphase-promoting com 99.8 3.7E-17 8E-22 173.9 39.0 295 359-654 210-506 (564)
38 PRK12370 invasion protein regu 99.8 2.6E-18 5.7E-23 207.4 34.9 266 381-649 258-536 (553)
39 KOG2076 RNA polymerase III tra 99.8 6.5E-18 1.4E-22 196.2 35.3 300 381-687 139-510 (895)
40 PRK14574 hmsH outer membrane p 99.8 1.4E-16 3E-21 195.7 47.8 397 47-655 79-520 (822)
41 KOG0495 HAT repeat protein [RN 99.8 1.3E-15 2.9E-20 170.1 48.4 316 372-699 575-890 (913)
42 KOG1129 TPR repeat-containing 99.8 1.5E-17 3.2E-22 171.9 29.8 243 385-628 227-472 (478)
43 PRK12370 invasion protein regu 99.8 1.6E-17 3.4E-22 200.7 34.3 229 418-648 261-502 (553)
44 TIGR00540 hemY_coli hemY prote 99.8 5.7E-17 1.2E-21 188.8 37.6 300 381-688 84-398 (409)
45 KOG4162 Predicted calmodulin-b 99.8 1.5E-16 3.3E-21 182.0 37.2 287 368-654 465-789 (799)
46 PF13429 TPR_15: Tetratricopep 99.8 2.2E-19 4.7E-24 198.7 13.9 268 410-688 5-276 (280)
47 KOG0550 Molecular chaperone (D 99.8 9E-18 2E-22 179.2 24.2 368 35-645 48-440 (486)
48 KOG1174 Anaphase-promoting com 99.8 5.1E-17 1.1E-21 172.8 29.6 304 386-697 201-508 (564)
49 PRK10747 putative protoheme IX 99.8 4.4E-16 9.5E-21 180.4 37.9 297 381-689 84-390 (398)
50 PRK11189 lipoprotein NlpI; Pro 99.8 5.8E-17 1.3E-21 179.9 28.9 231 395-630 40-282 (296)
51 KOG1125 TPR repeat-containing 99.8 7.1E-18 1.5E-22 187.9 21.2 233 385-617 289-530 (579)
52 TIGR00540 hemY_coli hemY prote 99.8 4.6E-16 9.9E-21 181.2 35.5 277 371-648 108-399 (409)
53 KOG1129 TPR repeat-containing 99.8 3.5E-17 7.6E-22 169.1 22.4 264 390-654 188-464 (478)
54 PRK11189 lipoprotein NlpI; Pro 99.8 1.4E-16 3E-21 176.9 29.0 223 428-654 39-272 (296)
55 KOG4162 Predicted calmodulin-b 99.8 2.9E-15 6.2E-20 171.7 39.2 292 396-694 459-788 (799)
56 KOG1125 TPR repeat-containing 99.8 1.5E-17 3.4E-22 185.2 19.1 233 419-651 289-530 (579)
57 TIGR02521 type_IV_pilW type IV 99.8 3.7E-16 8E-21 166.8 28.6 201 449-649 31-233 (234)
58 KOG0550 Molecular chaperone (D 99.8 4.6E-17 1E-21 173.8 20.4 271 381-651 49-353 (486)
59 TIGR02521 type_IV_pilW type IV 99.8 5.4E-16 1.2E-20 165.5 28.9 201 380-580 30-232 (234)
60 PLN03218 maturation of RBCL 1; 99.8 1.1E-13 2.3E-18 174.9 53.9 269 380-649 506-784 (1060)
61 COG3063 PilF Tfp pilus assembl 99.7 4.7E-16 1E-20 155.3 25.4 201 418-618 38-240 (250)
62 PLN03081 pentatricopeptide (PP 99.7 1.4E-14 3E-19 181.0 44.2 295 379-688 257-556 (697)
63 PRK10747 putative protoheme IX 99.7 4.7E-15 1E-19 171.8 36.4 265 381-649 117-391 (398)
64 COG3063 PilF Tfp pilus assembl 99.7 9.2E-16 2E-20 153.2 25.6 206 449-654 35-242 (250)
65 PLN02789 farnesyltranstransfer 99.7 9.2E-16 2E-20 169.8 26.7 265 414-701 36-314 (320)
66 KOG1127 TPR repeat-containing 99.7 2.6E-15 5.5E-20 175.0 30.6 224 462-685 471-696 (1238)
67 PLN02789 farnesyltranstransfer 99.7 1.7E-15 3.6E-20 167.7 27.0 217 381-597 37-267 (320)
68 KOG3785 Uncharacterized conser 99.7 8.3E-14 1.8E-18 145.6 36.5 304 383-698 153-498 (557)
69 COG2956 Predicted N-acetylgluc 99.7 1.7E-14 3.6E-19 150.1 30.0 267 384-652 38-315 (389)
70 PLN03218 maturation of RBCL 1; 99.7 1.9E-12 4.1E-17 163.8 54.1 257 388-647 479-747 (1060)
71 PLN03077 Protein ECB2; Provisi 99.7 2.9E-13 6.3E-18 173.2 46.7 293 378-687 421-718 (857)
72 PLN03081 pentatricopeptide (PP 99.7 8.6E-14 1.9E-18 173.9 40.4 265 379-648 288-557 (697)
73 KOG1127 TPR repeat-containing 99.7 2E-14 4.3E-19 167.7 30.2 294 383-685 564-909 (1238)
74 KOG0553 TPR repeat-containing 99.7 3.4E-16 7.5E-21 162.7 14.1 107 31-137 76-183 (304)
75 KOG1840 Kinesin light chain [C 99.7 8.7E-15 1.9E-19 168.5 26.9 251 372-648 190-479 (508)
76 KOG1840 Kinesin light chain [C 99.7 3.8E-14 8.2E-19 163.3 29.6 230 384-613 209-478 (508)
77 COG2956 Predicted N-acetylgluc 99.7 1.3E-13 2.7E-18 143.6 29.9 268 419-695 39-317 (389)
78 PLN03077 Protein ECB2; Provisi 99.7 1.8E-12 3.9E-17 166.0 47.2 87 42-131 228-316 (857)
79 KOG1156 N-terminal acetyltrans 99.6 3E-12 6.4E-17 144.7 41.0 437 41-689 12-511 (700)
80 cd05804 StaR_like StaR_like; a 99.6 5.8E-13 1.3E-17 152.9 36.4 312 377-689 2-336 (355)
81 KOG1156 N-terminal acetyltrans 99.6 1.1E-12 2.5E-17 147.9 31.4 317 381-697 7-408 (700)
82 KOG1915 Cell cycle control pro 99.6 1.1E-09 2.3E-14 119.5 50.2 432 47-697 84-543 (677)
83 cd05804 StaR_like StaR_like; a 99.5 9.9E-12 2.1E-16 142.7 33.3 274 375-649 37-337 (355)
84 KOG2376 Signal recognition par 99.5 1.7E-10 3.6E-15 129.4 40.5 316 381-701 110-499 (652)
85 PF12569 NARP1: NMDA receptor- 99.5 1.3E-11 2.9E-16 144.2 33.1 305 381-688 4-333 (517)
86 KOG4234 TPR repeat-containing 99.5 2.6E-13 5.7E-18 131.7 14.7 122 31-152 90-217 (271)
87 KOG2376 Signal recognition par 99.5 2.7E-10 5.9E-15 127.8 39.2 279 379-658 173-497 (652)
88 TIGR03302 OM_YfiO outer membra 99.5 2.2E-12 4.8E-17 138.8 22.5 190 376-582 28-234 (235)
89 TIGR03302 OM_YfiO outer membra 99.5 2E-12 4.3E-17 139.2 22.0 190 445-651 29-235 (235)
90 KOG1130 Predicted G-alpha GTPa 99.5 4E-13 8.8E-18 143.1 15.5 265 385-649 21-345 (639)
91 PRK15359 type III secretion sy 99.5 1.6E-12 3.4E-17 127.9 16.8 122 537-661 13-134 (144)
92 PRK14720 transcript cleavage f 99.5 3.5E-11 7.5E-16 146.3 30.5 278 370-701 20-318 (906)
93 PRK15359 type III secretion sy 99.4 1.8E-12 3.9E-17 127.4 15.5 125 504-631 14-138 (144)
94 KOG1130 Predicted G-alpha GTPa 99.4 1.2E-12 2.6E-17 139.5 14.2 268 420-688 22-343 (639)
95 COG3071 HemY Uncharacterized e 99.4 1.6E-09 3.4E-14 117.1 35.5 296 381-687 84-388 (400)
96 KOG0543 FKBP-type peptidyl-pro 99.4 4E-12 8.6E-17 138.1 15.6 125 29-153 201-341 (397)
97 PF12569 NARP1: NMDA receptor- 99.4 6.3E-09 1.4E-13 122.0 43.2 133 382-514 195-336 (517)
98 KOG3060 Uncharacterized conser 99.4 8.4E-11 1.8E-15 119.2 23.3 186 446-631 49-237 (289)
99 KOG4648 Uncharacterized conser 99.4 1.5E-12 3.3E-17 135.7 10.9 115 29-143 90-205 (536)
100 PRK10370 formate-dependent nit 99.4 2.4E-11 5.1E-16 126.1 19.8 125 530-654 52-179 (198)
101 COG5010 TadD Flp pilus assembl 99.4 5.9E-11 1.3E-15 121.9 21.1 175 434-609 52-226 (257)
102 KOG3060 Uncharacterized conser 99.4 3.7E-10 8.1E-15 114.6 26.2 185 377-561 48-235 (289)
103 COG5010 TadD Flp pilus assembl 99.3 8.9E-11 1.9E-15 120.6 20.8 179 398-577 50-228 (257)
104 KOG1915 Cell cycle control pro 99.3 8.9E-09 1.9E-13 112.4 37.0 318 373-692 65-398 (677)
105 PRK10370 formate-dependent nit 99.3 7.9E-11 1.7E-15 122.2 20.9 154 387-551 22-178 (198)
106 PRK15179 Vi polysaccharide bio 99.3 1.3E-10 2.8E-15 141.0 25.3 154 501-654 70-223 (694)
107 KOG3785 Uncharacterized conser 99.3 5.4E-10 1.2E-14 117.5 26.2 292 383-688 59-351 (557)
108 PRK14720 transcript cleavage f 99.3 1.7E-10 3.7E-15 140.4 25.4 223 409-663 25-267 (906)
109 COG3071 HemY Uncharacterized e 99.3 5.4E-09 1.2E-13 113.1 33.7 276 370-649 107-391 (400)
110 PRK04841 transcriptional regul 99.3 2.2E-09 4.8E-14 139.1 36.3 311 381-692 409-763 (903)
111 PRK15179 Vi polysaccharide bio 99.3 2.8E-10 6.2E-15 138.0 25.7 140 478-617 81-220 (694)
112 KOG1128 Uncharacterized conser 99.3 1.2E-10 2.7E-15 133.5 20.6 224 414-652 397-620 (777)
113 KOG1128 Uncharacterized conser 99.3 4.1E-10 8.8E-15 129.4 23.6 224 377-615 394-617 (777)
114 PRK04841 transcriptional regul 99.3 1.9E-08 4.2E-13 130.4 41.8 268 386-653 457-765 (903)
115 PF04733 Coatomer_E: Coatomer 99.3 5.2E-11 1.1E-15 130.5 14.1 258 388-654 8-271 (290)
116 TIGR02552 LcrH_SycD type III s 99.2 1.6E-10 3.4E-15 112.7 15.5 117 538-654 4-120 (135)
117 KOG4340 Uncharacterized conser 99.2 2.6E-08 5.6E-13 103.0 31.6 384 45-653 19-448 (459)
118 TIGR02552 LcrH_SycD type III s 99.2 2.8E-10 6.1E-15 110.9 15.5 116 505-620 5-120 (135)
119 KOG4340 Uncharacterized conser 99.2 2.1E-09 4.6E-14 110.8 21.4 265 391-660 20-317 (459)
120 KOG0553 TPR repeat-containing 99.2 3.2E-10 6.9E-15 118.6 14.2 120 381-500 81-200 (304)
121 KOG4642 Chaperone-dependent E3 99.2 5.6E-11 1.2E-15 119.2 8.0 103 34-136 8-111 (284)
122 PLN03088 SGT1, suppressor of 99.1 5.3E-10 1.2E-14 127.1 15.6 112 39-150 5-117 (356)
123 PRK15363 pathogenicity island 99.1 3.2E-09 6.9E-14 102.6 16.2 112 543-654 26-138 (157)
124 COG4783 Putative Zn-dependent 99.1 3.6E-08 7.8E-13 109.6 25.3 153 412-581 303-455 (484)
125 COG4783 Putative Zn-dependent 99.1 3.6E-08 7.9E-13 109.6 25.2 153 480-649 303-455 (484)
126 KOG2047 mRNA splicing factor [ 99.1 7.7E-06 1.7E-10 93.2 43.4 135 23-157 53-192 (835)
127 KOG2047 mRNA splicing factor [ 99.1 1.6E-05 3.4E-10 90.8 45.7 317 371-697 339-697 (835)
128 PRK15363 pathogenicity island 99.1 4.6E-09 9.9E-14 101.5 15.5 108 373-480 26-134 (157)
129 PF04733 Coatomer_E: Coatomer 99.0 2.9E-09 6.3E-14 116.8 13.9 235 379-621 33-272 (290)
130 PLN03088 SGT1, suppressor of 99.0 7.7E-09 1.7E-13 117.6 16.7 107 385-491 6-112 (356)
131 COG0457 NrfG FOG: TPR repeat [ 99.0 2.1E-06 4.5E-11 90.2 34.5 223 429-651 37-268 (291)
132 KOG0545 Aryl-hydrocarbon recep 99.0 6.6E-09 1.4E-13 104.6 13.8 118 29-146 171-307 (329)
133 KOG0551 Hsp90 co-chaperone CNS 99.0 3.1E-09 6.8E-14 111.7 11.1 99 35-133 80-183 (390)
134 COG0457 NrfG FOG: TPR repeat [ 99.0 2E-06 4.4E-11 90.3 33.1 224 394-617 36-268 (291)
135 PRK10866 outer membrane biogen 99.0 1.3E-07 2.9E-12 101.3 23.7 178 379-576 30-237 (243)
136 PF13525 YfiO: Outer membrane 98.9 1.1E-07 2.4E-12 99.4 21.7 172 379-570 3-197 (203)
137 KOG0376 Serine-threonine phosp 98.9 1.3E-09 2.8E-14 120.9 7.1 118 35-152 3-121 (476)
138 PRK10866 outer membrane biogen 98.9 2.6E-07 5.5E-12 99.1 23.3 182 447-645 30-238 (243)
139 KOG1941 Acetylcholine receptor 98.9 4.7E-07 1E-11 96.2 23.4 302 381-683 6-354 (518)
140 PF13525 YfiO: Outer membrane 98.9 1.9E-07 4.1E-12 97.7 20.1 175 448-639 4-198 (203)
141 PF12895 Apc3: Anaphase-promot 98.8 6.6E-09 1.4E-13 92.0 6.8 80 49-129 2-84 (84)
142 COG4785 NlpI Lipoprotein NlpI, 98.8 3.8E-07 8.2E-12 90.6 18.8 197 379-580 63-266 (297)
143 KOG4648 Uncharacterized conser 98.8 4.3E-09 9.3E-14 110.4 5.2 237 384-654 100-336 (536)
144 PF13414 TPR_11: TPR repeat; P 98.8 1.6E-08 3.5E-13 85.8 7.9 67 68-134 2-69 (69)
145 TIGR02795 tol_pal_ybgF tol-pal 98.8 9.6E-08 2.1E-12 90.4 14.2 103 552-654 3-111 (119)
146 TIGR02795 tol_pal_ybgF tol-pal 98.8 1.2E-07 2.6E-12 89.8 14.7 105 381-485 2-112 (119)
147 PRK10153 DNA-binding transcrip 98.8 1.5E-07 3.3E-12 111.3 18.8 124 533-657 358-491 (517)
148 PF14938 SNAP: Soluble NSF att 98.8 1.2E-07 2.6E-12 104.7 16.6 172 524-696 42-232 (282)
149 PF14938 SNAP: Soluble NSF att 98.8 1.5E-07 3.2E-12 104.0 17.3 200 490-690 42-267 (282)
150 PRK11906 transcriptional regul 98.8 3E-07 6.6E-12 103.1 19.3 160 383-542 257-432 (458)
151 PRK10153 DNA-binding transcrip 98.8 3.5E-07 7.7E-12 108.2 20.9 137 380-517 338-487 (517)
152 COG4785 NlpI Lipoprotein NlpI, 98.8 9.5E-07 2.1E-11 87.8 20.0 196 449-649 65-267 (297)
153 PRK02603 photosystem I assembl 98.8 2.5E-07 5.5E-12 94.2 16.6 121 376-516 30-153 (172)
154 PRK02603 photosystem I assembl 98.8 3.7E-07 7.9E-12 93.0 17.7 90 483-572 35-127 (172)
155 cd00189 TPR Tetratricopeptide 98.7 1E-07 2.3E-12 84.9 11.8 98 553-650 2-99 (100)
156 COG4235 Cytochrome c biogenesi 98.7 2.7E-07 5.9E-12 97.8 16.2 116 434-549 141-259 (287)
157 PF13414 TPR_11: TPR repeat; P 98.7 3.8E-08 8.3E-13 83.4 8.0 67 584-650 2-69 (69)
158 KOG1070 rRNA processing protei 98.7 4.4E-06 9.5E-11 102.4 28.1 234 396-630 1439-1681(1710)
159 KOG3081 Vesicle coat complex C 98.7 7.7E-06 1.7E-10 84.4 25.7 256 388-654 15-277 (299)
160 PRK11906 transcriptional regul 98.7 6.6E-07 1.4E-11 100.5 19.3 158 419-576 259-432 (458)
161 COG4235 Cytochrome c biogenesi 98.7 3.1E-07 6.7E-12 97.4 15.9 122 533-654 138-262 (287)
162 CHL00033 ycf3 photosystem I as 98.7 3E-07 6.5E-12 93.3 14.7 77 520-596 38-117 (168)
163 PF09976 TPR_21: Tetratricopep 98.7 7.7E-07 1.7E-11 87.8 17.2 128 382-510 12-145 (145)
164 cd00189 TPR Tetratricopeptide 98.7 2.3E-07 5E-12 82.6 12.2 97 384-480 3-99 (100)
165 KOG1941 Acetylcholine receptor 98.7 2.4E-06 5.1E-11 91.0 20.7 236 416-651 7-278 (518)
166 PF09976 TPR_21: Tetratricopep 98.6 1.1E-06 2.4E-11 86.7 16.9 117 529-646 23-145 (145)
167 COG3898 Uncharacterized membra 98.6 7E-05 1.5E-09 80.9 31.1 261 381-648 120-392 (531)
168 CHL00033 ycf3 photosystem I as 98.6 5.4E-07 1.2E-11 91.4 14.9 100 395-494 13-117 (168)
169 KOG1070 rRNA processing protei 98.6 7.6E-06 1.7E-10 100.4 26.6 219 432-651 1441-1666(1710)
170 KOG0543 FKBP-type peptidyl-pro 98.6 5.4E-07 1.2E-11 98.7 14.7 148 484-650 209-357 (397)
171 COG3898 Uncharacterized membra 98.6 0.00014 2.9E-09 78.8 32.0 297 384-694 87-399 (531)
172 KOG2053 Mitochondrial inherita 98.6 6.1E-05 1.3E-09 89.5 32.1 226 391-618 19-259 (932)
173 PF13432 TPR_16: Tetratricopep 98.6 1.7E-07 3.7E-12 78.3 8.1 64 590-653 2-65 (65)
174 PF13432 TPR_16: Tetratricopep 98.6 1.6E-07 3.4E-12 78.6 7.6 65 73-137 1-65 (65)
175 PF12895 Apc3: Anaphase-promot 98.6 1.3E-07 2.8E-12 83.7 7.3 81 564-645 2-84 (84)
176 PRK15331 chaperone protein Sic 98.6 9E-07 2E-11 86.1 13.3 112 371-483 27-138 (165)
177 KOG3617 WD40 and TPR repeat-co 98.6 3.6E-05 7.8E-10 89.6 27.8 281 384-688 803-1173(1416)
178 PRK15331 chaperone protein Sic 98.5 1.1E-06 2.3E-11 85.5 12.7 109 544-653 30-138 (165)
179 PRK10803 tol-pal system protei 98.5 3.3E-06 7.3E-11 91.1 17.1 106 380-485 141-253 (263)
180 KOG3081 Vesicle coat complex C 98.5 4.7E-05 1E-09 78.8 23.7 230 422-662 15-250 (299)
181 COG4105 ComL DNA uptake lipopr 98.5 4.1E-05 8.8E-10 79.8 22.6 190 378-584 31-237 (254)
182 KOG1308 Hsp70-interacting prot 98.5 1.1E-07 2.3E-12 101.2 3.7 107 29-135 107-214 (377)
183 PRK10803 tol-pal system protei 98.4 5.9E-06 1.3E-10 89.2 17.0 102 484-585 143-251 (263)
184 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 5E-06 1.1E-10 94.2 16.5 119 523-644 175-293 (395)
185 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 5.6E-06 1.2E-10 93.9 16.4 118 423-543 177-294 (395)
186 KOG3617 WD40 and TPR repeat-co 98.4 0.00011 2.4E-09 85.7 26.5 205 383-613 759-995 (1416)
187 COG4700 Uncharacterized protei 98.4 7.3E-05 1.6E-09 73.0 21.1 151 495-647 68-221 (251)
188 KOG4555 TPR repeat-containing 98.4 6.3E-06 1.4E-10 75.5 13.0 107 41-149 48-159 (175)
189 PF12688 TPR_5: Tetratrico pep 98.4 7.1E-06 1.5E-10 77.0 13.1 56 588-643 41-99 (120)
190 PF12688 TPR_5: Tetratrico pep 98.3 1.5E-05 3.2E-10 74.9 15.0 96 518-613 2-103 (120)
191 COG4105 ComL DNA uptake lipopr 98.3 0.00011 2.4E-09 76.7 21.8 189 448-653 33-238 (254)
192 KOG4234 TPR repeat-containing 98.3 1.1E-05 2.4E-10 79.4 13.6 112 381-492 95-211 (271)
193 KOG2053 Mitochondrial inherita 98.3 0.00024 5.2E-09 84.6 27.0 226 426-652 20-259 (932)
194 COG4700 Uncharacterized protei 98.3 6.6E-05 1.4E-09 73.3 18.5 146 464-611 71-219 (251)
195 KOG2300 Uncharacterized conser 98.3 0.0018 3.9E-08 72.2 31.6 323 368-690 30-475 (629)
196 KOG2471 TPR repeat-containing 98.3 0.00012 2.5E-09 81.3 22.4 274 376-650 235-650 (696)
197 KOG1586 Protein required for f 98.3 6.7E-05 1.4E-09 76.0 18.5 144 552-696 75-231 (288)
198 PF14559 TPR_19: Tetratricopep 98.3 2.8E-06 6.1E-11 71.6 7.3 66 392-457 2-67 (68)
199 PF13371 TPR_9: Tetratricopept 98.2 4.1E-06 8.8E-11 71.8 7.8 64 76-139 2-65 (73)
200 COG1729 Uncharacterized protei 98.2 3.4E-05 7.4E-10 81.2 15.3 104 384-487 144-253 (262)
201 PF13512 TPR_18: Tetratricopep 98.2 4.3E-05 9.4E-10 72.9 14.4 86 379-464 8-99 (142)
202 PF13371 TPR_9: Tetratricopept 98.2 7.7E-06 1.7E-10 70.0 8.7 64 592-655 2-65 (73)
203 KOG2796 Uncharacterized conser 98.2 0.0025 5.5E-08 65.8 27.5 226 415-653 69-320 (366)
204 PF14559 TPR_19: Tetratricopep 98.2 5.4E-06 1.2E-10 69.9 7.3 57 597-653 3-59 (68)
205 KOG1586 Protein required for f 98.1 0.00036 7.9E-09 70.8 20.3 139 520-659 77-235 (288)
206 COG1729 Uncharacterized protei 98.1 5.6E-05 1.2E-09 79.6 14.8 100 486-585 144-249 (262)
207 KOG2471 TPR repeat-containing 98.1 0.0005 1.1E-08 76.4 22.4 263 383-646 285-682 (696)
208 PF13512 TPR_18: Tetratricopep 98.1 0.0001 2.2E-09 70.4 14.0 104 551-654 10-134 (142)
209 KOG2796 Uncharacterized conser 98.0 0.0029 6.4E-08 65.4 24.7 226 380-618 68-319 (366)
210 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 2E-05 4.3E-10 88.7 9.9 69 580-648 70-141 (453)
211 KOG4555 TPR repeat-containing 98.0 0.00023 4.9E-09 65.5 14.4 98 384-481 46-147 (175)
212 PF06552 TOM20_plant: Plant sp 97.9 7.5E-05 1.6E-09 73.4 10.9 97 601-697 7-117 (186)
213 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 6.3E-05 1.4E-09 84.8 11.6 68 513-580 71-141 (453)
214 KOG2610 Uncharacterized conser 97.9 0.00062 1.3E-08 72.4 18.0 161 418-578 106-274 (491)
215 KOG1585 Protein required for f 97.9 0.004 8.7E-08 63.9 22.0 69 376-444 26-100 (308)
216 PF06552 TOM20_plant: Plant sp 97.9 0.00011 2.4E-09 72.3 10.6 98 533-654 7-115 (186)
217 KOG2610 Uncharacterized conser 97.8 0.00091 2E-08 71.2 17.6 161 384-544 106-274 (491)
218 KOG1914 mRNA cleavage and poly 97.8 0.063 1.4E-06 61.3 32.8 318 371-696 10-437 (656)
219 PF13424 TPR_12: Tetratricopep 97.8 2.2E-05 4.9E-10 68.1 4.4 63 586-648 6-75 (78)
220 KOG1310 WD40 repeat protein [G 97.8 5.8E-05 1.2E-09 84.3 8.0 106 29-134 367-476 (758)
221 PF04184 ST7: ST7 protein; In 97.7 0.0025 5.3E-08 72.1 20.2 192 419-623 172-384 (539)
222 KOG0530 Protein farnesyltransf 97.7 0.0048 1E-07 64.0 20.3 234 466-700 60-309 (318)
223 KOG1258 mRNA processing protei 97.7 0.18 3.9E-06 58.8 36.6 329 369-701 67-482 (577)
224 KOG1585 Protein required for f 97.7 0.0049 1.1E-07 63.2 19.6 115 528-643 121-251 (308)
225 PF13424 TPR_12: Tetratricopep 97.7 8.4E-05 1.8E-09 64.5 6.0 74 616-689 2-75 (78)
226 COG2909 MalT ATP-dependent tra 97.7 0.078 1.7E-06 64.3 32.1 304 379-688 345-687 (894)
227 PF10300 DUF3808: Protein of u 97.7 0.024 5.3E-07 67.0 28.3 153 529-688 200-375 (468)
228 KOG2300 Uncharacterized conser 97.6 0.19 4.2E-06 56.7 40.6 185 427-614 287-514 (629)
229 PF04184 ST7: ST7 protein; In 97.6 0.0034 7.4E-08 71.0 18.7 197 446-655 165-382 (539)
230 PF02259 FAT: FAT domain; Int 97.6 0.022 4.7E-07 65.1 25.7 47 586-632 253-305 (352)
231 KOG0530 Protein farnesyltransf 97.6 0.012 2.5E-07 61.2 20.2 218 395-629 40-269 (318)
232 PF13431 TPR_17: Tetratricopep 97.5 0.00011 2.3E-09 52.3 3.6 33 92-124 2-34 (34)
233 KOG4642 Chaperone-dependent E3 97.5 0.00029 6.3E-09 71.8 7.8 92 386-477 15-106 (284)
234 PF05843 Suf: Suppressor of fo 97.5 0.0028 6.1E-08 69.8 16.2 136 519-654 3-142 (280)
235 KOG1550 Extracellular protein 97.5 0.038 8.3E-07 66.9 27.1 262 379-652 242-542 (552)
236 PF13281 DUF4071: Domain of un 97.4 0.034 7.4E-07 62.5 24.1 118 379-497 139-273 (374)
237 KOG4507 Uncharacterized conser 97.4 0.005 1.1E-07 70.1 17.2 95 561-655 617-712 (886)
238 KOG3616 Selective LIM binding 97.4 0.026 5.7E-07 65.7 23.1 299 382-697 662-1067(1636)
239 PF05843 Suf: Suppressor of fo 97.4 0.0038 8.3E-08 68.7 16.4 132 452-583 4-139 (280)
240 KOG0376 Serine-threonine phosp 97.4 0.00021 4.6E-09 80.2 6.4 109 384-492 7-115 (476)
241 PF02259 FAT: FAT domain; Int 97.4 0.061 1.3E-06 61.4 27.2 73 620-692 253-341 (352)
242 PF07079 DUF1347: Protein of u 97.4 0.36 7.9E-06 54.3 30.6 93 386-478 50-157 (549)
243 KOG0545 Aryl-hydrocarbon recep 97.4 0.0011 2.3E-08 67.8 10.3 122 517-654 178-299 (329)
244 KOG4507 Uncharacterized conser 97.3 0.012 2.6E-07 67.1 18.3 120 371-490 203-324 (886)
245 PF13281 DUF4071: Domain of un 97.3 0.086 1.9E-06 59.3 24.9 116 450-566 142-274 (374)
246 PF10345 Cohesin_load: Cohesin 97.2 0.52 1.1E-05 58.1 33.6 287 397-684 37-428 (608)
247 PF13428 TPR_14: Tetratricopep 97.2 0.00064 1.4E-08 51.6 5.0 39 588-626 4-42 (44)
248 KOG1550 Extracellular protein 97.2 0.14 3E-06 62.2 27.7 275 396-691 227-540 (552)
249 PF13428 TPR_14: Tetratricopep 97.2 0.0007 1.5E-08 51.4 5.2 43 70-112 2-44 (44)
250 PF00515 TPR_1: Tetratricopept 97.1 0.00061 1.3E-08 48.4 4.1 32 71-102 3-34 (34)
251 COG3118 Thioredoxin domain-con 97.1 0.018 3.9E-07 61.4 16.5 151 380-531 133-286 (304)
252 PF10345 Cohesin_load: Cohesin 97.1 0.83 1.8E-05 56.4 33.9 263 380-643 58-428 (608)
253 PF08631 SPO22: Meiosis protei 97.1 0.27 5.9E-06 54.1 26.8 38 650-687 236-273 (278)
254 KOG0985 Vesicle coat protein c 97.1 0.12 2.5E-06 62.9 24.6 220 386-631 1053-1325(1666)
255 KOG3616 Selective LIM binding 97.1 0.1 2.2E-06 61.1 22.9 183 489-690 712-912 (1636)
256 KOG1258 mRNA processing protei 97.1 1 2.2E-05 52.9 33.1 258 397-654 61-401 (577)
257 COG2909 MalT ATP-dependent tra 97.1 0.64 1.4E-05 56.8 30.3 233 380-612 414-686 (894)
258 PF13431 TPR_17: Tetratricopep 97.0 0.00061 1.3E-08 48.4 3.0 32 608-639 2-33 (34)
259 PF10300 DUF3808: Protein of u 97.0 0.16 3.5E-06 60.1 25.2 176 471-649 179-377 (468)
260 KOG1914 mRNA cleavage and poly 97.0 0.18 3.9E-06 57.7 23.1 152 499-650 347-503 (656)
261 COG3118 Thioredoxin domain-con 96.9 0.049 1.1E-06 58.2 17.6 149 415-565 134-286 (304)
262 PF00515 TPR_1: Tetratricopept 96.9 0.0015 3.3E-08 46.3 4.4 32 620-651 2-33 (34)
263 PF07719 TPR_2: Tetratricopept 96.9 0.0021 4.5E-08 45.5 5.1 33 620-652 2-34 (34)
264 KOG0551 Hsp90 co-chaperone CNS 96.9 0.0065 1.4E-07 65.1 10.7 101 380-480 80-184 (390)
265 PF08631 SPO22: Meiosis protei 96.9 0.69 1.5E-05 50.9 27.2 122 392-513 4-151 (278)
266 KOG0546 HSP90 co-chaperone CPR 96.8 0.0021 4.5E-08 69.6 6.0 118 31-148 217-354 (372)
267 PF07719 TPR_2: Tetratricopept 96.7 0.0027 5.9E-08 44.9 4.6 32 71-102 3-34 (34)
268 COG0790 FOG: TPR repeat, SEL1 96.7 0.35 7.6E-06 53.7 23.7 189 427-651 53-269 (292)
269 COG0790 FOG: TPR repeat, SEL1 96.7 0.63 1.4E-05 51.6 25.4 169 388-565 48-236 (292)
270 PF03704 BTAD: Bacterial trans 96.7 0.04 8.6E-07 54.2 13.9 113 523-648 12-125 (146)
271 COG2976 Uncharacterized protei 96.6 0.1 2.2E-06 52.4 16.0 119 535-654 70-194 (207)
272 PF12968 DUF3856: Domain of Un 96.6 0.053 1.2E-06 49.4 12.6 89 42-130 15-127 (144)
273 KOG0985 Vesicle coat protein c 96.6 0.21 4.5E-06 60.9 21.0 211 381-612 1104-1339(1666)
274 KOG1308 Hsp70-interacting prot 96.5 0.0021 4.5E-08 69.2 3.9 95 386-480 119-213 (377)
275 PF03704 BTAD: Bacterial trans 96.4 0.069 1.5E-06 52.5 13.8 116 384-511 9-124 (146)
276 KOG4151 Myosin assembly protei 96.2 0.019 4E-07 68.6 9.5 123 27-149 44-173 (748)
277 PF08424 NRDE-2: NRDE-2, neces 96.2 0.29 6.4E-06 55.0 18.9 124 568-691 48-185 (321)
278 COG2976 Uncharacterized protei 96.1 0.25 5.4E-06 49.7 15.5 97 452-549 92-191 (207)
279 PF13181 TPR_8: Tetratricopept 96.1 0.011 2.4E-07 41.8 4.7 32 620-651 2-33 (34)
280 KOG1464 COP9 signalosome, subu 96.1 0.22 4.7E-06 52.1 15.6 49 429-477 41-93 (440)
281 KOG0890 Protein kinase of the 96.1 2.7 5.9E-05 56.7 28.9 303 387-692 1455-1836(2382)
282 PF04910 Tcf25: Transcriptiona 96.1 0.26 5.6E-06 56.2 17.8 168 408-583 33-225 (360)
283 KOG2041 WD40 repeat protein [G 96.1 1.3 2.9E-05 52.1 23.0 179 377-576 688-877 (1189)
284 KOG3783 Uncharacterized conser 96.0 0.65 1.4E-05 53.7 20.5 252 432-694 250-525 (546)
285 PF08424 NRDE-2: NRDE-2, neces 96.0 0.44 9.5E-06 53.6 19.4 135 466-616 48-185 (321)
286 PF04910 Tcf25: Transcriptiona 95.9 0.29 6.2E-06 55.8 17.4 163 441-618 32-226 (360)
287 PF14853 Fis1_TPR_C: Fis1 C-te 95.7 0.037 7.9E-07 43.6 6.2 42 71-112 3-44 (53)
288 PF15015 NYD-SP12_N: Spermatog 95.6 0.04 8.7E-07 60.8 8.4 103 25-130 168-289 (569)
289 PF13181 TPR_8: Tetratricopept 95.6 0.024 5.3E-07 40.0 4.7 31 104-134 2-32 (34)
290 KOG3783 Uncharacterized conser 95.6 0.42 9.2E-06 55.2 16.6 244 398-652 250-524 (546)
291 COG5107 RNA14 Pre-mRNA 3'-end 95.5 2 4.4E-05 48.4 20.9 123 529-651 409-534 (660)
292 PRK10941 hypothetical protein; 95.5 0.098 2.1E-06 56.7 10.8 69 72-140 184-252 (269)
293 COG5107 RNA14 Pre-mRNA 3'-end 95.1 3.1 6.7E-05 47.0 20.8 241 368-618 289-535 (660)
294 PF13174 TPR_6: Tetratricopept 95.1 0.037 8.1E-07 38.6 4.2 33 620-652 1-33 (33)
295 KOG1464 COP9 signalosome, subu 95.1 1.2 2.6E-05 46.7 16.4 51 393-443 39-93 (440)
296 PF13176 TPR_7: Tetratricopept 94.9 0.041 8.8E-07 39.6 3.9 29 105-133 1-29 (36)
297 PF13176 TPR_7: Tetratricopept 94.7 0.039 8.5E-07 39.7 3.4 29 621-649 1-29 (36)
298 KOG3824 Huntingtin interacting 94.7 0.097 2.1E-06 55.5 7.5 62 596-657 127-188 (472)
299 PRK10941 hypothetical protein; 94.6 0.25 5.5E-06 53.5 11.0 70 587-656 183-252 (269)
300 PF12968 DUF3856: Domain of Un 94.6 0.85 1.8E-05 41.9 12.1 91 596-689 20-129 (144)
301 PF14853 Fis1_TPR_C: Fis1 C-te 94.5 0.14 3E-06 40.4 6.4 37 620-656 2-38 (53)
302 PF13174 TPR_6: Tetratricopept 94.4 0.076 1.6E-06 37.0 4.3 31 383-413 2-32 (33)
303 PRK11619 lytic murein transgly 94.4 18 0.00039 44.8 28.7 122 524-646 248-373 (644)
304 KOG3824 Huntingtin interacting 94.2 0.13 2.9E-06 54.5 7.4 75 384-458 119-193 (472)
305 PF04781 DUF627: Protein of un 94.2 0.45 9.8E-06 43.5 9.8 103 387-512 2-107 (111)
306 KOG2041 WD40 repeat protein [G 94.1 3.8 8.2E-05 48.5 19.2 226 393-645 675-936 (1189)
307 KOG1463 26S proteasome regulat 94.1 11 0.00024 41.3 23.2 266 385-650 8-318 (411)
308 KOG2396 HAT (Half-A-TPR) repea 94.0 0.74 1.6E-05 52.6 13.1 91 535-625 89-180 (568)
309 PF09613 HrpB1_HrpK: Bacterial 93.9 0.8 1.7E-05 45.0 11.5 85 381-465 10-94 (160)
310 PF09613 HrpB1_HrpK: Bacterial 93.7 0.92 2E-05 44.6 11.6 98 552-650 11-108 (160)
311 COG3914 Spy Predicted O-linked 93.7 2.1 4.6E-05 50.1 16.2 127 434-560 50-185 (620)
312 COG3914 Spy Predicted O-linked 93.6 2.3 4.9E-05 49.8 16.3 118 536-653 50-176 (620)
313 COG1747 Uncharacterized N-term 93.6 17 0.00037 42.0 22.6 98 412-512 63-160 (711)
314 smart00028 TPR Tetratricopepti 93.5 0.13 2.8E-06 34.6 4.2 31 71-101 3-33 (34)
315 KOG1538 Uncharacterized conser 93.5 4.9 0.00011 47.2 18.6 88 547-645 743-830 (1081)
316 PF04781 DUF627: Protein of un 93.5 0.54 1.2E-05 43.0 9.0 103 422-547 3-108 (111)
317 PRK15180 Vi polysaccharide bio 93.5 0.9 2E-05 51.2 12.4 127 391-517 299-425 (831)
318 COG5159 RPN6 26S proteasome re 93.3 13 0.00029 39.6 21.6 264 385-650 7-316 (421)
319 PF14561 TPR_20: Tetratricopep 93.0 0.96 2.1E-05 40.3 9.8 64 571-634 8-73 (90)
320 PRK15180 Vi polysaccharide bio 93.0 0.48 1E-05 53.3 9.4 124 529-652 301-424 (831)
321 KOG0890 Protein kinase of the 92.9 52 0.0011 45.4 31.1 273 421-695 1455-1790(2382)
322 PF14561 TPR_20: Tetratricopep 92.8 0.97 2.1E-05 40.2 9.5 45 505-549 10-54 (90)
323 KOG2396 HAT (Half-A-TPR) repea 92.7 24 0.00051 41.0 38.2 95 55-149 90-186 (568)
324 PRK13184 pknD serine/threonine 92.7 39 0.00084 43.4 27.7 131 385-516 479-624 (932)
325 smart00028 TPR Tetratricopepti 92.6 0.18 3.8E-06 34.0 3.7 31 621-651 3-33 (34)
326 KOG1839 Uncharacterized protei 92.3 1 2.2E-05 57.4 12.0 133 379-511 930-1085(1236)
327 COG4649 Uncharacterized protei 92.2 12 0.00026 37.1 16.6 27 621-647 169-195 (221)
328 KOG1310 WD40 repeat protein [G 92.1 0.43 9.2E-06 54.5 7.7 102 381-482 374-478 (758)
329 COG4649 Uncharacterized protei 92.1 13 0.00029 36.9 16.7 144 487-631 62-212 (221)
330 KOG1839 Uncharacterized protei 92.0 1.3 2.7E-05 56.6 12.3 164 485-648 934-1128(1236)
331 PF09986 DUF2225: Uncharacteri 91.8 1.4 3E-05 46.3 10.8 68 585-652 118-198 (214)
332 KOG3364 Membrane protein invol 91.5 2.7 5.8E-05 39.8 10.9 73 585-657 32-109 (149)
333 PF10602 RPN7: 26S proteasome 91.2 2.9 6.3E-05 42.5 12.2 97 586-683 37-136 (177)
334 TIGR02561 HrpB1_HrpK type III 90.6 2.8 6E-05 40.6 10.4 83 383-465 12-94 (153)
335 COG4976 Predicted methyltransf 90.6 0.32 7E-06 49.9 4.4 60 594-653 4-63 (287)
336 TIGR02561 HrpB1_HrpK type III 90.4 3.1 6.6E-05 40.3 10.6 81 555-635 14-94 (153)
337 PF09986 DUF2225: Uncharacteri 90.3 2.4 5.2E-05 44.5 10.9 65 551-615 118-195 (214)
338 PF10602 RPN7: 26S proteasome 90.2 3.2 6.9E-05 42.2 11.4 20 490-509 120-139 (177)
339 KOG3807 Predicted membrane pro 90.1 32 0.0007 37.5 19.0 51 391-443 194-244 (556)
340 KOG2581 26S proteasome regulat 90.0 26 0.00056 39.5 18.4 135 382-516 127-280 (493)
341 KOG2422 Uncharacterized conser 89.8 22 0.00048 41.8 18.4 48 463-510 252-311 (665)
342 COG4976 Predicted methyltransf 89.7 0.44 9.6E-06 48.9 4.6 59 78-136 4-62 (287)
343 KOG2422 Uncharacterized conser 89.6 22 0.00047 41.9 18.2 49 394-442 251-311 (665)
344 COG1747 Uncharacterized N-term 89.5 48 0.001 38.6 23.1 224 378-618 63-292 (711)
345 KOG4814 Uncharacterized conser 89.4 3.1 6.7E-05 48.9 11.4 97 382-478 355-457 (872)
346 KOG3364 Membrane protein invol 89.3 4.8 0.0001 38.2 10.6 78 378-455 29-111 (149)
347 KOG1538 Uncharacterized conser 89.3 18 0.00039 42.9 17.2 84 516-610 746-829 (1081)
348 PF04053 Coatomer_WDAD: Coatom 89.2 14 0.00031 43.3 17.2 158 389-576 269-427 (443)
349 KOG0529 Protein geranylgeranyl 88.9 11 0.00024 42.5 15.0 126 533-658 91-234 (421)
350 PF10579 Rapsyn_N: Rapsyn N-te 88.8 2.2 4.8E-05 36.4 7.3 58 41-98 11-72 (80)
351 PF04190 DUF410: Protein of un 88.7 39 0.00086 36.7 21.2 25 482-506 89-113 (260)
352 KOG1463 26S proteasome regulat 88.7 43 0.00093 37.0 20.0 273 419-696 8-323 (411)
353 KOG4814 Uncharacterized conser 88.3 3.3 7.2E-05 48.7 10.8 90 523-612 360-455 (872)
354 COG5159 RPN6 26S proteasome re 88.0 12 0.00027 39.9 13.7 100 589-688 129-234 (421)
355 PF04053 Coatomer_WDAD: Coatom 88.0 15 0.00034 43.0 16.4 157 424-610 270-427 (443)
356 COG5191 Uncharacterized conser 87.8 1.2 2.7E-05 47.7 6.5 84 574-657 96-180 (435)
357 COG2912 Uncharacterized conser 87.8 2.2 4.8E-05 45.6 8.4 68 72-139 184-251 (269)
358 PRK13184 pknD serine/threonine 87.1 5.1 0.00011 51.1 12.5 132 558-692 482-623 (932)
359 KOG0128 RNA-binding protein SA 86.8 91 0.002 38.6 23.0 252 370-623 102-385 (881)
360 KOG0529 Protein geranylgeranyl 86.3 15 0.00033 41.6 14.0 132 498-629 90-239 (421)
361 PF13374 TPR_10: Tetratricopep 85.9 1.6 3.5E-05 31.9 4.6 30 620-649 3-32 (42)
362 PF12862 Apc5: Anaphase-promot 85.8 3 6.6E-05 37.4 7.2 59 77-135 6-73 (94)
363 KOG2581 26S proteasome regulat 85.6 58 0.0012 36.9 17.8 125 426-550 137-280 (493)
364 PF10516 SHNi-TPR: SHNi-TPR; 85.2 1.6 3.4E-05 31.8 4.0 29 104-132 2-30 (38)
365 COG5191 Uncharacterized conser 85.0 1.6 3.5E-05 46.9 5.6 78 478-555 102-180 (435)
366 PF15015 NYD-SP12_N: Spermatog 85.0 7.5 0.00016 43.7 10.8 56 590-645 233-288 (569)
367 PF13374 TPR_10: Tetratricopep 84.0 2.3 4.9E-05 31.1 4.7 27 519-545 4-30 (42)
368 COG2912 Uncharacterized conser 83.9 9.3 0.0002 41.0 10.7 69 556-624 186-254 (269)
369 PF11207 DUF2989: Protein of u 83.8 18 0.00039 37.1 12.3 54 482-536 140-197 (203)
370 KOG3807 Predicted membrane pro 83.5 75 0.0016 34.8 19.7 154 445-611 180-337 (556)
371 COG4941 Predicted RNA polymera 83.2 64 0.0014 35.7 16.5 87 567-654 312-400 (415)
372 COG3629 DnrI DNA-binding trans 83.1 12 0.00027 40.6 11.5 92 40-132 119-216 (280)
373 KOG4014 Uncharacterized conser 81.9 61 0.0013 32.7 15.2 49 598-648 181-233 (248)
374 PF11207 DUF2989: Protein of u 80.9 13 0.00029 38.1 10.1 72 567-639 122-198 (203)
375 KOG4014 Uncharacterized conser 80.6 67 0.0015 32.3 15.5 187 378-581 31-234 (248)
376 PF12862 Apc5: Anaphase-promot 80.4 7.4 0.00016 34.9 7.4 54 391-444 8-70 (94)
377 PF10579 Rapsyn_N: Rapsyn N-te 80.2 14 0.0003 31.7 8.2 62 382-443 7-71 (80)
378 COG4941 Predicted RNA polymera 80.0 1E+02 0.0022 34.1 17.8 187 396-591 211-405 (415)
379 PF07721 TPR_4: Tetratricopept 79.9 2.5 5.4E-05 27.8 3.1 24 104-127 2-25 (26)
380 KOG0686 COP9 signalosome, subu 78.2 13 0.00029 41.7 9.8 124 5-129 112-255 (466)
381 PF09670 Cas_Cas02710: CRISPR- 77.3 34 0.00074 39.4 13.5 62 383-444 133-198 (379)
382 PF07720 TPR_3: Tetratricopept 77.2 7.1 0.00015 28.1 5.0 32 620-651 2-35 (36)
383 PF07079 DUF1347: Protein of u 77.1 1.5E+02 0.0032 34.4 43.0 209 455-667 304-542 (549)
384 COG3629 DnrI DNA-binding trans 76.8 12 0.00025 40.8 8.8 64 585-648 153-216 (280)
385 PF12739 TRAPPC-Trs85: ER-Golg 75.2 94 0.002 36.3 16.6 86 551-650 300-401 (414)
386 KOG2063 Vacuolar assembly/sort 74.9 1.5E+02 0.0032 37.8 18.6 58 72-129 310-372 (877)
387 PF10516 SHNi-TPR: SHNi-TPR; 74.7 5 0.00011 29.3 3.6 30 620-649 2-31 (38)
388 PF04190 DUF410: Protein of un 73.7 1.4E+02 0.003 32.4 19.3 93 381-473 10-114 (260)
389 PF11817 Foie-gras_1: Foie gra 73.6 81 0.0018 33.9 14.5 26 384-409 13-38 (247)
390 PF12739 TRAPPC-Trs85: ER-Golg 72.9 96 0.0021 36.3 16.0 29 384-412 211-239 (414)
391 PF10373 EST1_DNA_bind: Est1 D 72.7 11 0.00024 41.1 7.9 62 502-563 1-62 (278)
392 PF07720 TPR_3: Tetratricopept 72.6 12 0.00025 27.0 5.1 21 383-403 3-23 (36)
393 KOG2114 Vacuolar assembly/sort 72.4 43 0.00093 41.3 12.6 206 421-648 340-550 (933)
394 PF07721 TPR_4: Tetratricopept 72.3 4.5 9.8E-05 26.5 2.8 22 621-642 3-24 (26)
395 KOG1920 IkappaB kinase complex 71.9 1.7E+02 0.0036 38.0 17.8 109 485-611 941-1052(1265)
396 COG3947 Response regulator con 70.9 11 0.00024 40.6 6.6 57 73-129 283-339 (361)
397 KOG1920 IkappaB kinase complex 68.7 3.7E+02 0.0079 35.1 20.1 24 623-646 1003-1026(1265)
398 PF10373 EST1_DNA_bind: Est1 D 68.2 16 0.00035 39.9 7.8 62 570-631 1-62 (278)
399 PRK11619 lytic murein transgly 68.1 3.1E+02 0.0067 34.1 32.3 123 558-688 248-374 (644)
400 PF11817 Foie-gras_1: Foie gra 67.6 79 0.0017 34.0 12.8 60 586-645 179-244 (247)
401 PF00244 14-3-3: 14-3-3 protei 67.2 73 0.0016 34.0 12.2 29 384-412 4-32 (236)
402 COG3947 Response regulator con 66.8 55 0.0012 35.5 10.7 61 587-647 281-341 (361)
403 PF04097 Nic96: Nup93/Nic96; 66.1 3.3E+02 0.0072 33.7 19.7 26 666-692 511-536 (613)
404 PF00244 14-3-3: 14-3-3 protei 65.8 67 0.0015 34.3 11.6 34 615-648 161-198 (236)
405 PF10255 Paf67: RNA polymerase 65.3 1.9E+02 0.0041 33.5 15.5 59 554-613 125-192 (404)
406 KOG2114 Vacuolar assembly/sort 65.2 77 0.0017 39.3 12.7 246 387-654 340-596 (933)
407 KOG4279 Serine/threonine prote 64.8 80 0.0017 38.4 12.5 101 379-480 199-318 (1226)
408 PF10255 Paf67: RNA polymerase 64.1 19 0.0004 41.5 7.3 57 73-130 126-191 (404)
409 KOG2063 Vacuolar assembly/sort 64.1 4.1E+02 0.0088 34.0 20.4 69 39-108 310-384 (877)
410 PF09670 Cas_Cas02710: CRISPR- 63.1 1.5E+02 0.0031 34.3 14.5 131 556-693 136-274 (379)
411 COG3014 Uncharacterized protei 62.9 1.1E+02 0.0023 34.0 12.1 102 468-580 40-154 (449)
412 PF09205 DUF1955: Domain of un 62.9 81 0.0018 30.1 9.8 78 48-129 68-146 (161)
413 KOG0128 RNA-binding protein SA 61.8 4.1E+02 0.0089 33.3 27.3 217 371-589 137-385 (881)
414 PF13041 PPR_2: PPR repeat fam 60.5 22 0.00048 27.3 5.1 33 42-74 9-43 (50)
415 PF14863 Alkyl_sulf_dimr: Alky 60.3 30 0.00066 33.6 7.0 54 69-122 70-123 (141)
416 PF04097 Nic96: Nup93/Nic96; 59.8 3.7E+02 0.008 33.3 18.1 151 388-543 265-440 (613)
417 KOG0546 HSP90 co-chaperone CPR 59.6 14 0.0003 41.0 4.9 70 555-624 279-348 (372)
418 COG5536 BET4 Protein prenyltra 59.0 1.1E+02 0.0023 33.1 11.0 125 534-658 91-232 (328)
419 COG4455 ImpE Protein of avirul 58.5 66 0.0014 33.4 9.1 62 593-654 9-70 (273)
420 PF14863 Alkyl_sulf_dimr: Alky 58.3 32 0.00069 33.4 6.8 51 381-431 70-120 (141)
421 KOG0276 Vesicle coat complex C 57.2 1E+02 0.0022 36.8 11.4 27 449-475 666-692 (794)
422 COG4455 ImpE Protein of avirul 53.8 2.9E+02 0.0062 29.0 13.4 59 492-550 10-68 (273)
423 TIGR03504 FimV_Cterm FimV C-te 52.4 23 0.0005 26.8 3.7 26 622-647 2-27 (44)
424 TIGR02710 CRISPR-associated pr 52.2 2.9E+02 0.0062 31.7 14.0 55 386-440 135-196 (380)
425 PRK12798 chemotaxis protein; R 51.6 4.4E+02 0.0095 30.5 22.5 270 338-611 31-321 (421)
426 smart00299 CLH Clathrin heavy 51.2 2.3E+02 0.0049 27.1 15.1 31 463-493 21-51 (140)
427 PRK09687 putative lyase; Provi 51.1 3.7E+02 0.008 29.5 29.8 222 414-652 36-267 (280)
428 KOG4521 Nuclear pore complex, 50.6 6.6E+02 0.014 32.9 17.4 30 415-444 920-949 (1480)
429 smart00299 CLH Clathrin heavy 50.0 2.4E+02 0.0051 26.9 15.3 33 496-528 20-52 (140)
430 smart00386 HAT HAT (Half-A-TPR 48.7 44 0.00095 22.3 4.6 20 433-452 5-24 (33)
431 TIGR03504 FimV_Cterm FimV C-te 48.3 33 0.00071 26.0 3.9 25 385-409 3-27 (44)
432 COG5187 RPN7 26S proteasome re 48.3 3.5E+02 0.0075 29.5 12.7 98 484-581 116-222 (412)
433 COG5536 BET4 Protein prenyltra 47.3 4.1E+02 0.0089 28.9 18.3 169 389-557 39-233 (328)
434 smart00386 HAT HAT (Half-A-TPR 47.3 41 0.00089 22.4 4.3 20 535-554 5-24 (33)
435 PF09205 DUF1955: Domain of un 46.7 1E+02 0.0022 29.6 7.6 55 594-648 95-149 (161)
436 KOG0889 Histone acetyltransfer 46.6 1.2E+03 0.025 34.9 20.3 110 586-701 2737-2853(3550)
437 PF12854 PPR_1: PPR repeat 44.1 50 0.0011 23.2 4.2 26 619-644 7-32 (34)
438 KOG0276 Vesicle coat complex C 42.7 1.3E+02 0.0028 36.0 9.3 80 518-613 615-694 (794)
439 PRK12798 chemotaxis protein; R 41.3 6.2E+02 0.013 29.3 28.7 226 411-645 80-321 (421)
440 PHA02537 M terminase endonucle 41.3 58 0.0013 34.4 6.0 91 46-136 93-211 (230)
441 PF12854 PPR_1: PPR repeat 41.1 59 0.0013 22.8 4.2 26 103-128 7-32 (34)
442 PF02064 MAS20: MAS20 protein 39.1 83 0.0018 29.7 6.0 32 42-73 69-100 (121)
443 KOG0687 26S proteasome regulat 38.9 3.3E+02 0.0071 30.3 11.1 99 551-649 104-211 (393)
444 TIGR02710 CRISPR-associated pr 38.6 5.7E+02 0.012 29.4 13.7 54 489-542 136-196 (380)
445 PF03887 YfbU: YfbU domain; I 38.1 8.8 0.00019 38.2 -0.6 25 878-912 126-150 (166)
446 PRK05445 hypothetical protein; 37.8 16 0.00035 36.2 1.2 22 879-910 125-146 (164)
447 PF04090 RNA_pol_I_TF: RNA pol 36.4 4.2E+02 0.009 27.5 11.1 66 381-446 41-107 (199)
448 COG5187 RPN7 26S proteasome re 36.2 6.1E+02 0.013 27.7 13.2 29 415-443 115-143 (412)
449 KOG0687 26S proteasome regulat 35.1 5.8E+02 0.013 28.5 12.2 24 523-546 187-210 (393)
450 cd02682 MIT_AAA_Arch MIT: doma 34.5 1.6E+02 0.0035 25.2 6.5 29 381-409 6-34 (75)
451 cd02682 MIT_AAA_Arch MIT: doma 34.2 1.3E+02 0.0028 25.8 5.8 13 597-609 18-30 (75)
452 PF11846 DUF3366: Domain of un 33.6 1.2E+02 0.0026 31.1 7.0 49 602-651 128-176 (193)
453 COG3014 Uncharacterized protei 33.5 7.3E+02 0.016 27.8 16.3 33 619-651 213-245 (449)
454 KOG4521 Nuclear pore complex, 32.5 1.3E+03 0.028 30.4 17.6 183 450-651 921-1135(1480)
455 KOG4279 Serine/threonine prote 31.8 2E+02 0.0043 35.3 8.8 180 414-618 200-399 (1226)
456 PF13041 PPR_2: PPR repeat fam 31.2 1.8E+02 0.0038 22.1 6.0 31 68-98 2-32 (50)
457 PF06545 DUF1116: Protein of u 30.5 13 0.00027 38.5 -0.9 47 935-982 139-188 (216)
458 cd02680 MIT_calpain7_2 MIT: do 30.4 81 0.0018 27.0 4.1 16 428-443 19-34 (75)
459 KOG2758 Translation initiation 30.2 8E+02 0.017 27.3 17.8 192 370-561 118-332 (432)
460 COG3013 Uncharacterized conser 29.8 25 0.00053 33.4 1.0 22 879-910 129-150 (168)
461 PF05745 CRPA: Chlamydia 15 kD 29.6 23 0.00049 33.0 0.7 19 970-988 113-131 (150)
462 KOG4151 Myosin assembly protei 29.3 1.1E+02 0.0024 37.7 6.5 95 388-482 60-160 (748)
463 PF11846 DUF3366: Domain of un 28.9 1.5E+02 0.0033 30.3 6.9 46 468-514 130-175 (193)
464 KOG0686 COP9 signalosome, subu 28.8 9.5E+02 0.021 27.7 18.6 60 485-544 152-214 (466)
465 PRK15490 Vi polysaccharide bio 28.7 6.2E+02 0.014 30.8 12.5 79 563-643 20-98 (578)
466 KOG2280 Vacuolar assembly/sort 28.4 1.3E+03 0.027 29.0 18.3 45 84-128 365-414 (829)
467 TIGR03362 VI_chp_7 type VI sec 28.0 8.7E+02 0.019 27.0 17.5 159 482-649 99-280 (301)
468 KOG2034 Vacuolar sorting prote 27.7 1.4E+03 0.03 29.2 20.6 50 388-441 365-415 (911)
469 PF04348 LppC: LppC putative l 27.5 20 0.00044 43.3 0.0 55 419-473 28-85 (536)
470 PF01535 PPR: PPR repeat; Int 27.3 85 0.0018 20.6 3.2 19 558-576 7-25 (31)
471 PF04090 RNA_pol_I_TF: RNA pol 27.1 7.2E+02 0.016 25.7 11.2 32 601-632 158-191 (199)
472 PF04348 LppC: LppC putative l 27.0 21 0.00045 43.2 0.0 101 378-478 21-127 (536)
473 PF07219 HemY_N: HemY protein 26.8 2.3E+02 0.005 26.0 6.9 50 381-430 59-108 (108)
474 PF13226 DUF4034: Domain of un 26.0 5.3E+02 0.012 28.2 10.4 35 601-635 115-149 (277)
475 cd02680 MIT_calpain7_2 MIT: do 25.9 1.2E+02 0.0027 25.9 4.4 18 461-478 18-35 (75)
476 TIGR03362 VI_chp_7 type VI sec 25.1 9.8E+02 0.021 26.6 17.2 147 393-547 111-280 (301)
477 PF10952 DUF2753: Protein of u 24.7 3.6E+02 0.0077 25.6 7.3 26 521-546 5-30 (140)
478 KOG1497 COP9 signalosome, subu 24.5 6.1E+02 0.013 28.2 10.2 97 517-613 103-212 (399)
479 PF03745 DUF309: Domain of unk 24.5 3.9E+02 0.0085 21.8 7.6 58 624-682 4-61 (62)
480 PRK15490 Vi polysaccharide bio 24.5 3.8E+02 0.0083 32.5 9.7 79 393-473 20-98 (578)
481 KOG0567 HEAT repeat-containing 24.4 9.3E+02 0.02 26.1 17.2 246 347-613 15-261 (289)
482 PHA02537 M terminase endonucle 24.4 96 0.0021 32.8 4.3 17 428-444 96-112 (230)
483 PF10952 DUF2753: Protein of u 24.1 3.5E+02 0.0075 25.6 7.1 27 384-410 4-30 (140)
484 PF13226 DUF4034: Domain of un 23.5 6.7E+02 0.015 27.4 10.6 36 533-568 115-150 (277)
485 TIGR00756 PPR pentatricopeptid 22.4 1.6E+02 0.0034 19.7 3.9 21 557-577 6-26 (35)
486 COG4259 Uncharacterized protei 21.6 4.5E+02 0.0097 23.9 7.0 63 83-145 51-114 (121)
487 cd02679 MIT_spastin MIT: domai 21.0 1.7E+02 0.0036 25.4 4.3 15 429-443 22-36 (79)
488 KOG2561 Adaptor protein NUB1, 20.6 4.1E+02 0.009 30.7 8.3 48 519-566 165-223 (568)
489 cd02677 MIT_SNX15 MIT: domain 20.3 1.3E+02 0.0029 25.7 3.6 32 86-132 4-35 (75)
490 PF10938 YfdX: YfdX protein; 20.3 3.5E+02 0.0076 26.7 7.1 63 35-97 74-145 (155)
491 KOG0292 Vesicle coat complex C 20.2 7.2E+02 0.016 31.5 10.7 32 381-412 991-1022(1202)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-42 Score=376.25 Aligned_cols=444 Identities=18% Similarity=0.199 Sum_probs=367.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Q 001578 43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE 121 (1050)
Q Consensus 43 ~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~ 121 (1050)
..+.|+.|+|.+|.++-...-..+ .+...+..++..+++..++++....-..|+..+|...++|-.+|.++-..|++++
T Consensus 55 ah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~ 134 (966)
T KOG4626|consen 55 AHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQD 134 (966)
T ss_pred HHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHH
Confidence 356899999999999888776666 3333355577778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCCcccccc
Q 001578 122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS 201 (1050)
Q Consensus 122 A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 201 (1050)
|+..|+.+ +++.|...++..++.+......
T Consensus 135 al~~y~~a--------------iel~p~fida~inla~al~~~~------------------------------------ 164 (966)
T KOG4626|consen 135 ALALYRAA--------------IELKPKFIDAYINLAAALVTQG------------------------------------ 164 (966)
T ss_pred HHHHHHHH--------------HhcCchhhHHHhhHHHHHHhcC------------------------------------
Confidence 88888888 4444444444444422111110
Q ss_pred ccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccccCCCCCc
Q 001578 202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF 281 (1050)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~~ 281 (1050)
.+..
T Consensus 165 -------------------------------~~~~--------------------------------------------- 168 (966)
T KOG4626|consen 165 -------------------------------DLEL--------------------------------------------- 168 (966)
T ss_pred -------------------------------CCcc---------------------------------------------
Confidence 0000
Q ss_pred cCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHHHHhhhH
Q 001578 282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE 361 (1050)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~ 361 (1050)
T Consensus 169 -------------------------------------------------------------------------------- 168 (966)
T KOG4626|consen 169 -------------------------------------------------------------------------------- 168 (966)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578 362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441 (1050)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 441 (1050)
.--++...+..+|....+...+|..+-..|+..+|..+|.++++..|..+-+|..+|.++..+|+...|+..|++|
T Consensus 169 ----a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eA 244 (966)
T KOG4626|consen 169 ----AVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEA 244 (966)
T ss_pred ----cHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHh
Confidence 0013334455666667777788888888899999999999999999988889999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001578 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (1050)
Q Consensus 442 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 521 (1050)
+.++|+..++|+++|.+|...+.+++|+.+|.+++.+.|+++.++-++|.+|+.+|..+-|+..|++++++.|..+.++.
T Consensus 245 vkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~ 324 (966)
T KOG4626|consen 245 VKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYN 324 (966)
T ss_pred hcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 001578 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601 (1050)
Q Consensus 522 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 601 (1050)
++|.++-..|+..+|..+|.+++.+.|+++++.++||.+|.++|.+++|...|.++++..|+.+.++.++|.+|.++|++
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 001578 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFC 681 (1050)
Q Consensus 602 ~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 681 (1050)
++|+.+|+.++.+.|..++++.++|..|..+|+...|+++|.+|+.++|...+ ++.+++..+-..|+..+|+.
T Consensus 405 ~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae-------AhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 405 DDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE-------AHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred HHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH-------HHhhHHHHhhccCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999988765 45556666777788999999
Q ss_pred HHHHhhccCCCCHHHHHhhcCC
Q 001578 682 WFDIDGDIDPLFKEYWCKRLHP 703 (1050)
Q Consensus 682 ~l~~a~~l~p~~~e~w~~r~~~ 703 (1050)
.|+.++.++|+|++..|++++.
T Consensus 478 sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 478 SYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHHHccCCCCchhhhHHHHH
Confidence 9999999999999998887754
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-40 Score=358.98 Aligned_cols=409 Identities=22% Similarity=0.239 Sum_probs=373.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Q 001578 43 LAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE 121 (1050)
Q Consensus 43 ~~~~~~~~~~~~Ai~~y~~ai~~~~-~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~ 121 (1050)
.+-+|+..++++.+..-..+|+.++ -..+|.|.|+++-..|++++|+..++.+++++|++++||+.+|.|+...|+.+.
T Consensus 89 ~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~ 168 (966)
T KOG4626|consen 89 SAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLEL 168 (966)
T ss_pred hhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcc
Confidence 4668899999999999999999984 446699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCCcccccc
Q 001578 122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS 201 (1050)
Q Consensus 122 A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 201 (1050)
|.+.|..| ++++|.+..+...+.......
T Consensus 169 a~~~~~~a--------------lqlnP~l~ca~s~lgnLlka~------------------------------------- 197 (966)
T KOG4626|consen 169 AVQCFFEA--------------LQLNPDLYCARSDLGNLLKAE------------------------------------- 197 (966)
T ss_pred cHHHHHHH--------------HhcCcchhhhhcchhHHHHhh-------------------------------------
Confidence 99999999 555555544433330000000
Q ss_pred ccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccccCCCCCc
Q 001578 202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF 281 (1050)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~~ 281 (1050)
T Consensus 198 -------------------------------------------------------------------------------- 197 (966)
T KOG4626|consen 198 -------------------------------------------------------------------------------- 197 (966)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHHHHhhhH
Q 001578 282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE 361 (1050)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~ 361 (1050)
+.+.+
T Consensus 198 -----------------------------------------------------------------------Grl~e---- 202 (966)
T KOG4626|consen 198 -----------------------------------------------------------------------GRLEE---- 202 (966)
T ss_pred -----------------------------------------------------------------------cccch----
Confidence 00000
Q ss_pred HHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578 362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441 (1050)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 441 (1050)
..-++.+.+...|.-+-+|..+|..+..+|+...|+..|+++++++|+..++|+++|.+|...+.++.|+.+|.+|
T Consensus 203 ----a~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 203 ----AKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred ----hHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 0124555667777888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001578 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (1050)
Q Consensus 442 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 521 (1050)
+.+.|+++.++.++|.+|+.+|..+-|+..|++++++.|+.++++.++|..+-..|+..+|..+|.+++.+.|..+++.+
T Consensus 279 l~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~ 358 (966)
T KOG4626|consen 279 LNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN 358 (966)
T ss_pred HhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 001578 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601 (1050)
Q Consensus 522 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 601 (1050)
+||.++..+|.+++|...|.++++..|..+.++.+||.+|.++|++++|+.+|+.++.+.|..++++.++|..|..+|+.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001578 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCL 661 (1050)
Q Consensus 602 ~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~ 661 (1050)
+.|++.|.+|+.++|..++++.+||.+|...|+..+|+..|+.++.+.||.++++.++..
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999997655443
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=5.7e-35 Score=358.32 Aligned_cols=439 Identities=19% Similarity=0.197 Sum_probs=346.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001578 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS 114 (1050)
Q Consensus 35 ~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~ 114 (1050)
.+...+..|+.+|..|+|++|+.+|+++|+..|++..|.|+|.||+++|++++|+.+|++||+++|++.++++++|.+|.
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34556688999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCC
Q 001578 115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK 194 (1050)
Q Consensus 115 ~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 194 (1050)
.+|++++|+.+|..+..+.+........+++.... ..+.... ...... .+.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~a~~~~----~~~l~~------------------------~~~ 256 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK-KFAESKA----KEILET------------------------KPE 256 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH-HHHHHHH----HHHHhc------------------------CCC
Confidence 99999999999998866654433322222211100 0000000 000000 000
Q ss_pred CccccccccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccc
Q 001578 195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN 274 (1050)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 274 (1050)
..+....+..+...+
T Consensus 257 --------------------------------~~~~~~~~~~~~~~~--------------------------------- 271 (615)
T TIGR00990 257 --------------------------------NLPSVTFVGNYLQSF--------------------------------- 271 (615)
T ss_pred --------------------------------CCCCHHHHHHHHHHc---------------------------------
Confidence 000000000000000
Q ss_pred cCCCCCccCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHH
Q 001578 275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM 354 (1050)
Q Consensus 275 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~ 354 (1050)
.... .. +
T Consensus 272 ---------~~~~-------------------~~-------~-------------------------------------- 278 (615)
T TIGR00990 272 ---------RPKP-------------------RP-------A-------------------------------------- 278 (615)
T ss_pred ---------cCCc-------------------ch-------h--------------------------------------
Confidence 0000 00 0
Q ss_pred HHHhhhHHHHhHHHHHHHhhccCCCcHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Q 001578 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQ---VNEGKYASAISIFDQILKE---DPMYPEALIGRGTARAFQ 428 (1050)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~~~g~~~~Ai~~~~~al~~---~p~~~~a~~~la~~~~~~ 428 (1050)
.+.......+.....++.++... ...++|++|+..|++++.. .|....++..+|.++..+
T Consensus 279 --------------~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~ 344 (615)
T TIGR00990 279 --------------GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK 344 (615)
T ss_pred --------------hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Confidence 00000000111111222222222 3457899999999999986 477788999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001578 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508 (1050)
Q Consensus 429 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~ 508 (1050)
|++++|+..|+++++++|....++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++
T Consensus 345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 424 (615)
T TIGR00990 345 GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424 (615)
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH-
Q 001578 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA- 587 (1050)
Q Consensus 509 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~- 587 (1050)
++.++|++..++..+|.++..+|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++.+.|.....
T Consensus 425 al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~ 504 (615)
T TIGR00990 425 SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY 504 (615)
T ss_pred HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998864332
Q ss_pred -----HHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578 588 -----YHLRGLLL-HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 588 -----~~~la~~~-~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
+...+.++ ...|++++|+..+++++.++|++..++..+|.++..+|++++|+.+|++++++.+...+
T Consensus 505 ~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 505 MNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 22333333 44799999999999999999999999999999999999999999999999999887554
No 4
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-36 Score=327.00 Aligned_cols=437 Identities=22% Similarity=0.274 Sum_probs=327.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 001578 33 MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC 111 (1050)
Q Consensus 33 ~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~~-~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~ 111 (1050)
...+...+.+||++|+.|+|++||.+|+.||+++|+ |..|.|||.||..+|+|++.+++|++||+++|++++|++|++.
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS 191 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 445666778999999999999999999999999977 8999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhc
Q 001578 112 AFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSEN 191 (1050)
Q Consensus 112 ~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (1050)
++..+|++++|+.+..-.- +.-+-.......+.-..+...++..+. .
T Consensus 192 A~E~lg~~~eal~D~tv~c-i~~~F~n~s~~~~~eR~Lkk~a~~ka~-----e--------------------------- 238 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLC-ILEGFQNASIEPMAERVLKKQAMKKAK-----E--------------------------- 238 (606)
T ss_pred HHHhhccHHHHHHhhhHHH-HhhhcccchhHHHHHHHHHHHHHHHHH-----H---------------------------
Confidence 9999999999997765441 100000000000000001110111010 0
Q ss_pred CCCCccccccccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCccccccccc
Q 001578 192 HNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDAS 271 (1050)
Q Consensus 192 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (1050)
.+...+..-+|...++..+...|+.....
T Consensus 239 ---------------------------~~k~nr~p~lPS~~fi~syf~sF~~~~~~------------------------ 267 (606)
T KOG0547|consen 239 ---------------------------KLKENRPPVLPSATFIASYFGSFHADPKP------------------------ 267 (606)
T ss_pred ---------------------------hhcccCCCCCCcHHHHHHHHhhccccccc------------------------
Confidence 00001111122222222222122111000
Q ss_pred ccccCCCCCccCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhh
Q 001578 272 EINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFK 351 (1050)
Q Consensus 272 ~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~ 351 (1050)
....+...
T Consensus 268 -------------------------------------------------------------~~~~~~~k----------- 275 (606)
T KOG0547|consen 268 -------------------------------------------------------------LFDNKSDK----------- 275 (606)
T ss_pred -------------------------------------------------------------cccCCCcc-----------
Confidence 00000000
Q ss_pred hHHHHHhhhHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC----CCC---------H
Q 001578 352 WDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEG---KYASAISIFDQILKED----PMY---------P 415 (1050)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g---~~~~Ai~~~~~al~~~----p~~---------~ 415 (1050)
.+....-+...+..+ .|..|...+.+..... ..+ +
T Consensus 276 -----------------------------sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A 326 (606)
T KOG0547|consen 276 -----------------------------SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMA 326 (606)
T ss_pred -----------------------------chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHH
Confidence 011111111111222 4555555555443211 111 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 001578 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495 (1050)
Q Consensus 416 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~ 495 (1050)
.++...|..++..|++-.|...|+.++.++|.+...|..+|.+|....+.++....|.++..++|.++++|+.+|.+++-
T Consensus 327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL 406 (606)
T ss_pred HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH
Confidence 67888899999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 001578 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575 (1050)
Q Consensus 496 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 575 (1050)
++++++|+..|++++.++|++..++..++.+.+++++++++...|+.+.+..|+.++++...|.++..+++|++|++.|.
T Consensus 407 L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCC------CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578 576 QVLYIDKR------FSKAYHLRGLLLHG-LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (1050)
Q Consensus 576 ~al~~~p~------~~~~~~~la~~~~~-~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 648 (1050)
+++.+.|. ++..+...|.+..+ .+++..|+..+++|++++|....++..+|.+..++|+.++|+++|++++.+
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999987 55556655555433 589999999999999999999999999999999999999999999999988
Q ss_pred cCCCHH
Q 001578 649 ELDSME 654 (1050)
Q Consensus 649 ~p~~~~ 654 (1050)
.....+
T Consensus 567 Art~~E 572 (606)
T KOG0547|consen 567 ARTESE 572 (606)
T ss_pred HHhHHH
Confidence 655443
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.7e-31 Score=337.99 Aligned_cols=539 Identities=17% Similarity=0.107 Sum_probs=401.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 001578 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (1050)
Q Consensus 41 ~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~ 119 (1050)
..+..++..|++++|+..|+++++.+ .++..+..+|.+++..|++++|+..++++++.+|.+..+++.+|.++...|++
T Consensus 130 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 209 (899)
T TIGR02917 130 LRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNI 209 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCH
Confidence 45667788999999999999999988 44566889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCChHhHHHHHHHHHHHH---HHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCCc
Q 001578 120 EEALSVWEKGYEHALHQSADLKQFLELEELLT---AAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSD 196 (1050)
Q Consensus 120 ~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~---~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 196 (1050)
++|+..|+++++..|..+.....+..+.-... .+...+ ..+ .+..+..
T Consensus 210 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~-----~~~-----------------------~~~~~~~- 260 (899)
T TIGR02917 210 ELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHA-----DAL-----------------------LKKAPNS- 260 (899)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----HHH-----------------------HHhCCCC-
Confidence 99999999999998887655443332221111 010000 000 0000000
Q ss_pred cccccccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccccC
Q 001578 197 ICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQ 276 (1050)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k 276 (1050)
.... ...+... ...++.........+
T Consensus 261 -----------------------------------~~~~-~~~~~~~------------------~~~~~~~~A~~~~~~ 286 (899)
T TIGR02917 261 -----------------------------------PLAH-YLKALVD------------------FQKKNYEDARETLQD 286 (899)
T ss_pred -----------------------------------chHH-HHHHHHH------------------HHhcCHHHHHHHHHH
Confidence 0000 0000000 000000000000000
Q ss_pred CCCCccCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCC-CCCcHHhhhhhhhhhHHH
Q 001578 277 SSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNK-SSDSTESRSKLSFKWDML 355 (1050)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k-~~~~~~~l~~~~~~~~~~ 355 (1050)
. ....+. ........+...... +..+.+..++...+.... .......+.......+..
T Consensus 287 ~-----l~~~~~-----~~~~~~~~~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 345 (899)
T TIGR02917 287 A-----LKSAPE-----YLPALLLAGASEYQL-----------GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRV 345 (899)
T ss_pred H-----HHhCCC-----chhHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCH
Confidence 0 000000 000000000000001 111111222222211111 111111111111111111
Q ss_pred HHhhhHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001578 356 KETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAI 435 (1050)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 435 (1050)
.. ..-.+.......|.++..+..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+
T Consensus 346 ------~~--A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 417 (899)
T TIGR02917 346 ------DE--AIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAI 417 (899)
T ss_pred ------HH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHH
Confidence 11 1113345566778888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001578 436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515 (1050)
Q Consensus 436 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~ 515 (1050)
..+.+++...|........++..+...|++++|+..+++.+...|.++..+..+|.++...|++++|+.+|+++++.+|.
T Consensus 418 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 497 (899)
T TIGR02917 418 ADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD 497 (899)
T ss_pred HHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 99999999999988888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001578 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595 (1050)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 595 (1050)
+..++..+|.++...|++++|+..|++++...|.+..++..++.++...|++++|+..+++++..+|.+...+..++.++
T Consensus 498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 577 (899)
T TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY 577 (899)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 001578 596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASK 675 (1050)
Q Consensus 596 ~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~ 675 (1050)
...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++.+|+++. .++..+.++...++
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL-------ALLLLADAYAVMKN 650 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-------HHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999998875 45567777788899
Q ss_pred HHHHHHHHHHhhccCCCCHHHHH
Q 001578 676 INSEFCWFDIDGDIDPLFKEYWC 698 (1050)
Q Consensus 676 ~~~A~~~l~~a~~l~p~~~e~w~ 698 (1050)
+++|+..|+++...+|++.+.|.
T Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~ 673 (899)
T TIGR02917 651 YAKAITSLKRALELKPDNTEAQI 673 (899)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999888764
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2e-30 Score=334.16 Aligned_cols=309 Identities=18% Similarity=0.140 Sum_probs=294.2
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001578 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (1050)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (1050)
+.......|.++..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 669 (899)
T TIGR02917 590 LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT 669 (899)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence 34445667888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001578 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (1050)
Q Consensus 450 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 529 (1050)
.++..++.++...|++++|+..++.+....|.++..+..+|.++...|++++|+..|++++...|++ ..+..++.++..
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~ 748 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988 778889999999
Q ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 001578 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (1050)
Q Consensus 530 ~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~ 609 (1050)
.|++++|+..++++++..|++..++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ .+|+..++
T Consensus 749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 88999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 001578 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (1050)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~ 687 (1050)
+++...|+++.++..+|.++...|++++|+.+|+++++.+|.++. .++..+.++...|++++|...|++++
T Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 828 KALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA-------IRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH-------HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999875 55667778888899999999998765
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.3e-29 Score=326.70 Aligned_cols=97 Identities=16% Similarity=0.042 Sum_probs=85.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHH-------------
Q 001578 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAY------------- 106 (1050)
Q Consensus 41 ~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~------------- 106 (1050)
.++.-....++++.|...+.+++..+ .++..+..++.++++.|+.++|.+.++++++++|++..++
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCch
Confidence 34444568899999999999999999 6677789999999999999999999999999999998763
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 001578 107 ---ILKGCAFSALGRKEEALSVWEKGYEHALHQS 137 (1050)
Q Consensus 107 ---~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~ 137 (1050)
+.+|.++...|++++|++.|+++++..|...
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~ 146 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGAPPEL 146 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCCh
Confidence 6678899999999999999999998877764
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2e-29 Score=328.80 Aligned_cols=318 Identities=16% Similarity=0.071 Sum_probs=274.7
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCCHHHH
Q 001578 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--------------ALIGRGTARAFQRELEAA 434 (1050)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~--------------a~~~la~~~~~~g~~~~A 434 (1050)
.+.+++...|.++++++.+|.+++..|++++|+.+|+++++.+|++.. ....+|.++...|++++|
T Consensus 291 ~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA 370 (1157)
T PRK11447 291 ELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQA 370 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHH
Confidence 445566778889999999999999999999999999999999887642 123557888899999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH------------------------
Q 001578 435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG------------------------ 490 (1050)
Q Consensus 435 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg------------------------ 490 (1050)
+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..++
T Consensus 371 ~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~ 450 (1157)
T PRK11447 371 ERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRR 450 (1157)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999999999998876655444
Q ss_pred ------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Q 001578 491 ------------------IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552 (1050)
Q Consensus 491 ------------------~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 552 (1050)
.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++..|+++.
T Consensus 451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 34456799999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH----------------------------------------HhhCCCCHHHHHHHH
Q 001578 553 AWGHLTQFYQDLANSEKALECLQQV----------------------------------------LYIDKRFSKAYHLRG 592 (1050)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~l~~a----------------------------------------l~~~p~~~~~~~~la 592 (1050)
+++.++..+...+++++|+..++++ +...|.++..+..+|
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La 610 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLA 610 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHH
Confidence 8888877777777777777665542 234677888899999
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 001578 593 LLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYT 672 (1050)
Q Consensus 593 ~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~ 672 (1050)
.++...|++++|+..|+++++.+|+++.+++.++.+|...|++++|++.|+++++..|+++. .+...+.++..
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~-------~~~~la~~~~~ 683 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN-------TQRRVALAWAA 683 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH-------HHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998875 34456777778
Q ss_pred hcCHHHHHHHHHHhhccCCCC
Q 001578 673 ASKINSEFCWFDIDGDIDPLF 693 (1050)
Q Consensus 673 ~~~~~~A~~~l~~a~~l~p~~ 693 (1050)
.|++++|...|+++....|..
T Consensus 684 ~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 684 LGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred CCCHHHHHHHHHHHhhhCccC
Confidence 899999999999998876543
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=4.9e-29 Score=305.90 Aligned_cols=262 Identities=19% Similarity=0.253 Sum_probs=240.4
Q ss_pred cCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001578 428 QRELEAAISDFTEAIQSN---PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504 (1050)
Q Consensus 428 ~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 504 (1050)
.+++++|+..|++++... |....++..+|.++..+|++++|+..|+++++++|.....+..+|.++...|++++|+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 368999999999999864 77788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 001578 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (1050)
Q Consensus 505 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 584 (1050)
.|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++..++..+|.++..+|++++|+..|++++...|.+
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~ 466 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA 466 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCHHHHH
Q 001578 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC------LYLRASC-YHAIGEYREAIKDYDAALDLELDSMEKFV 657 (1050)
Q Consensus 585 ~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~------~~~la~~-~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 657 (1050)
+.++..+|.++..+|++++|+..|++++.+.|+.... +...+.+ +...|++++|+.++++++.++|++..
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~--- 543 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI--- 543 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH---
Confidence 9999999999999999999999999999999875332 2333333 34479999999999999999998864
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHH
Q 001578 658 LQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (1050)
Q Consensus 658 ~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~ 696 (1050)
++..+|.++...|++++|+.+|+++.++.+...+.
T Consensus 544 ----a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 544 ----AVATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred ----HHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 55667888889999999999999999998875554
No 10
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2e-30 Score=284.84 Aligned_cols=475 Identities=18% Similarity=0.167 Sum_probs=351.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001578 37 ITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA 115 (1050)
Q Consensus 37 ~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~ 115 (1050)
...+.++|.+|+.|+|+.||.+|+.||.++ +|..+|.||..||..+|+|.+|+++..++++++|+++++|.|+|.+++.
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 456789999999999999999999999999 8888899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCC
Q 001578 116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKS 195 (1050)
Q Consensus 116 lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 195 (1050)
+|+|++|+..|.++|++.|.+..-...+.+.. ....+. -.....+...+.....+..
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~-~~~~~~----------------------~~~~~~p~~~~~l~~~p~t 139 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY-LEDYAA----------------------DQLFTKPYFHEKLANLPLT 139 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhh-hHHHHh----------------------hhhccCcHHHHHhhcChhh
Confidence 99999999999999655555544444333333 110000 1223344455555555555
Q ss_pred ccccccccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCccccccccccccc
Q 001578 196 DICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINR 275 (1050)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 275 (1050)
+..+.+ +.+..++.....++..++.++.+.+.+....+.. +.+.. .... .....
T Consensus 140 ~~~~~~---~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~-~~~~~-------------~~~~-------~~~~~-- 193 (539)
T KOG0548|consen 140 NYSLSD---PAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLK-GVDEL-------------LFYA-------SGIEI-- 193 (539)
T ss_pred hhhhcc---HHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHh-cCccc-------------cccc-------ccccc--
Confidence 555555 6777777777777777777766444433333222 11000 0000 00000
Q ss_pred CCCCCccCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHH
Q 001578 276 QSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDML 355 (1050)
Q Consensus 276 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~ 355 (1050)
.....++. . ....... .... .
T Consensus 194 -----~~~~~~p~-----------------------------------------~---~~~~~~~---~~~d------~- 214 (539)
T KOG0548|consen 194 -----LASMAEPC-----------------------------------------K---QEHNGFP---IIED------N- 214 (539)
T ss_pred -----CCCCCCcc-----------------------------------------c---ccCCCCC---ccch------h-
Confidence 00000000 0 0000000 0000 0
Q ss_pred HHhhhHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001578 356 KETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAI 435 (1050)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 435 (1050)
.. ... ....+...-.+|...+...++..|++.|..+++++ .+...+...+.+|+..|.+.+++
T Consensus 215 ---~e-e~~------------~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~ 277 (539)
T KOG0548|consen 215 ---TE-ERR------------VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECI 277 (539)
T ss_pred ---HH-HHH------------HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhh
Confidence 00 000 00113445678999999999999999999999999 88899999999999999999999
Q ss_pred HHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001578 436 SDFTEAIQSNPSAG-------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508 (1050)
Q Consensus 436 ~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~ 508 (1050)
.....+++...... .+...+|..|...++++.|+.+|++++..... ..+.......++++.....
T Consensus 278 ~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~ 349 (539)
T KOG0548|consen 278 ELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAER 349 (539)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHH
Confidence 99999887654432 23445667788888999999999998776543 5566667778888888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 001578 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588 (1050)
Q Consensus 509 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 588 (1050)
..-++|.-...-...|..++..|+|..|+..|.+++..+|+++..|.+.|.+|..+|.+..|+...+.+++++|+...+|
T Consensus 350 ~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 350 KAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred HHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHH
Confidence 88888888777778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 001578 589 HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (1050)
Q Consensus 589 ~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 644 (1050)
...|.++..+.+|++|++.|+++++.+|++.++.-.+..|+..+.......+.+++
T Consensus 430 ~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 430 LRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 99999999999999999999999999999999888888888876444455555555
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=4.5e-27 Score=287.72 Aligned_cols=301 Identities=14% Similarity=0.053 Sum_probs=268.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (1050)
+.++..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+.+++...|++..++..++ .+.
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~ 188 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFL 188 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHH
Confidence 4446677888999999999999999999999999999999999999999999999999999999999998887764 478
Q ss_pred HcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----
Q 001578 461 ALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK---- 535 (1050)
Q Consensus 461 ~~g~~~eA~~~l~kal~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e---- 535 (1050)
..|++++|+..+++++...| ........++.++...|++++|+..+++++..+|+++.++..+|.++...|++++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~ 268 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQ 268 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHH
Confidence 89999999999999999876 3444556678899999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 001578 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (1050)
Q Consensus 536 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~ 615 (1050)
|+..|+++++.+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+
T Consensus 269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 269 AAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCC-H
Q 001578 616 PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLF-K 694 (1050)
Q Consensus 616 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~-~ 694 (1050)
|++..++..+|.++...|++++|+..|+++++.+|++.. ..|++|...|..+++.-+.. +
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~-------------------~~~~ea~~~~~~~~~~~~~~~~ 409 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP-------------------QSFEEGLLALDGQISAVNLPPE 409 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch-------------------hhHHHHHHHHHHHHHhcCCccc
Confidence 999888888899999999999999999999999999754 34556666666665543332 2
Q ss_pred H-HHHhhc
Q 001578 695 E-YWCKRL 701 (1050)
Q Consensus 695 e-~w~~r~ 701 (1050)
. +|.+-+
T Consensus 410 ~~~W~~~~ 417 (656)
T PRK15174 410 RLDWAWEV 417 (656)
T ss_pred hhhHHHHH
Confidence 3 575444
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1.9e-25 Score=278.63 Aligned_cols=238 Identities=14% Similarity=0.055 Sum_probs=209.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001578 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (1050)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 527 (1050)
++.++..+|.++.. ++..+|+..+.+++...|++. ....+|.++...|++++|+..|++++...|.+ ..+..+|.++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHH
Confidence 66677888888876 788889999999999888654 46667777789999999999999987775554 4577889999
Q ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 001578 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607 (1050)
Q Consensus 528 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~ 607 (1050)
...|++++|+.+++++++..|.....+..++......|++++|+..|+++++.+|+ +.++..+|.++.+.|++++|+..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999998888877777777889999999999999999996 89999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 001578 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (1050)
Q Consensus 608 l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~ 687 (1050)
|++++.++|+++.++.++|.++...|++++|+..|+++++++|+++. +++.+|.++...|++++|+..|++++
T Consensus 632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~-------a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA-------LIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999985 56778888888899999999999999
Q ss_pred ccCCCCHHH
Q 001578 688 DIDPLFKEY 696 (1050)
Q Consensus 688 ~l~p~~~e~ 696 (1050)
+++|+...-
T Consensus 705 ~l~P~~a~i 713 (987)
T PRK09782 705 DDIDNQALI 713 (987)
T ss_pred hcCCCCchh
Confidence 999987544
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=4.1e-26 Score=279.23 Aligned_cols=318 Identities=13% Similarity=0.067 Sum_probs=295.7
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001578 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (1050)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (1050)
.+..++...|.++++++.+|......|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 64 l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~ 143 (656)
T PRK15174 64 LLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN 143 (656)
T ss_pred HhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 001578 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKSAYTYLGLAL 527 (1050)
Q Consensus 449 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~~la~~~ 527 (1050)
..++..++.++...|++++|+..+++++...|+++..+..++ .+...|++++|+..+++++..+|. .......++.++
T Consensus 144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l 222 (656)
T PRK15174 144 SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTL 222 (656)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 999999999999999999999999999999999988887765 478999999999999999998763 344556678899
Q ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Q 001578 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK----ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603 (1050)
Q Consensus 528 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e 603 (1050)
...|++++|+..++++++.+|+++.++..+|.++...|++++ |+..|++++..+|+++.++..+|.++...|++++
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999999999986 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 001578 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWF 683 (1050)
Q Consensus 604 Ai~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l 683 (1050)
|+..+++++.++|+++.++..+|.++...|++++|+..|++++..+|++.. .++..+.++...|++++|+..|
T Consensus 303 A~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~-------~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 303 AIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK-------WNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH-------HHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998753 3344577788899999999999
Q ss_pred HHhhccCCCCH
Q 001578 684 DIDGDIDPLFK 694 (1050)
Q Consensus 684 ~~a~~l~p~~~ 694 (1050)
++++..+|...
T Consensus 376 ~~al~~~P~~~ 386 (656)
T PRK15174 376 EHYIQARASHL 386 (656)
T ss_pred HHHHHhChhhc
Confidence 99999988843
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.8e-25 Score=256.80 Aligned_cols=460 Identities=15% Similarity=0.085 Sum_probs=368.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc-CCcHH---HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcC
Q 001578 43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQD---ICNRAFCYSQLELHKHVIRDCDKALQLDPTL-LQAYILKGCAFSALG 117 (1050)
Q Consensus 43 ~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~---~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~-~~a~~~~g~~~~~lg 117 (1050)
.+.+|-+|+|+.+..++..+|... ..+.- +++.|.+|+.+|+|++|.+.|..+++-+|++ +-+++++|+.|+..|
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~ 356 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRG 356 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhc
Confidence 356889999999999999999887 33333 8999999999999999999999999999998 889999999999999
Q ss_pred CHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHH--hhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCC
Q 001578 118 RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAK--QDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKS 195 (1050)
Q Consensus 118 ~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~--~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 195 (1050)
++++|...|++.++..|+....++-|-.+........ .+........+
T Consensus 357 dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~------------------------------ 406 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV------------------------------ 406 (1018)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH------------------------------
Confidence 9999999999999888888877776655543331000 00000000000
Q ss_pred ccccccccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCccccccccccccc
Q 001578 196 DICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINR 275 (1050)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 275 (1050)
.
T Consensus 407 ---------------------------------------------~---------------------------------- 407 (1018)
T KOG2002|consen 407 ---------------------------------------------L---------------------------------- 407 (1018)
T ss_pred ---------------------------------------------H----------------------------------
Confidence 0
Q ss_pred CCCCCccCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHH
Q 001578 276 QSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDML 355 (1050)
Q Consensus 276 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~ 355 (1050)
............++.+....+..
T Consensus 408 ---------------------------------------------------------~~~~~d~~a~l~laql~e~~d~~ 430 (1018)
T KOG2002|consen 408 ---------------------------------------------------------EQTPVDSEAWLELAQLLEQTDPW 430 (1018)
T ss_pred ---------------------------------------------------------hcccccHHHHHHHHHHHHhcChH
Confidence 00000011111222222211111
Q ss_pred HHhhhHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-----HHHHHHHHHHH
Q 001578 356 KETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-----DPMY-----PEALIGRGTAR 425 (1050)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~-----~p~~-----~~a~~~la~~~ 425 (1050)
.. . ..+......+. ....+..++.+...|..++..|++..|...|..++.. +++. ....+++|.++
T Consensus 431 ~s-L-~~~~~A~d~L~--~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 431 AS-L-DAYGNALDILE--SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred HH-H-HHHHHHHHHHH--HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 11 0 01111110111 2334477999999999999999999999999999876 2222 23589999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001578 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505 (1050)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 505 (1050)
...++++.|.+.|..++...|...+++..+|......++..+|...+..++..+..++.++..+|.+++...++..|.+-
T Consensus 507 E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~ 586 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK 586 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999999998
Q ss_pred HHHHHHhCC--CCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHH
Q 001578 506 LSACVKLDK--ENKSAYTYLGLALSS------------IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571 (1050)
Q Consensus 506 l~~al~~~p--~~~~~~~~la~~~~~------------~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 571 (1050)
|...++... .++.+...||.+++. .+.+++|++.|.++|..+|.+..+-..+|.++...|++.+|+
T Consensus 587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~ 666 (1018)
T KOG2002|consen 587 FETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEAR 666 (1018)
T ss_pred HHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHH
Confidence 887776532 466778888887764 456889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578 572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID--PSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (1050)
Q Consensus 572 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 649 (1050)
.+|.++.+...+++.+|.++|.||..+|+|..|++.|+.++... .++.+++..||.++.+.|.+.+|.+.+.+|+.+.
T Consensus 667 dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 667 DIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 99999998887888999999999999999999999999999864 3568999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 001578 650 LDSMEKFVLQCLAFYQKEIALYT 672 (1050)
Q Consensus 650 p~~~~~~~~~~~~~~~~g~~~~~ 672 (1050)
|.++...++.+.+..+.+....+
T Consensus 747 p~~~~v~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 747 PSNTSVKFNLALVLKKLAESILR 769 (1018)
T ss_pred CccchHHhHHHHHHHHHHHHHHh
Confidence 99999888888888887766544
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=3.6e-25 Score=276.09 Aligned_cols=282 Identities=11% Similarity=-0.034 Sum_probs=254.1
Q ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001578 402 SIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479 (1050)
Q Consensus 402 ~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 479 (1050)
..+.+++...|. ++.+++.+|.++.. +++++|+..+.+++...|++. ....+|.++...|++++|+..+++++...
T Consensus 462 ~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~ 539 (987)
T PRK09782 462 PAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHD 539 (987)
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 334444455577 89999999999987 899999999999999999764 36667888889999999999999988876
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 001578 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (1050)
Q Consensus 480 p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~ 559 (1050)
|.+ ..+..+|.++...|++++|+.+++++++.+|.....+..++......|++++|+..|+++++.+|+ ..++.++|.
T Consensus 540 p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~ 617 (987)
T PRK09782 540 MSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARAT 617 (987)
T ss_pred CCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 654 557889999999999999999999999999999888888887788889999999999999999997 999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 001578 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639 (1050)
Q Consensus 560 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 639 (1050)
++.+.|++++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCH
Q 001578 640 KDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFK 694 (1050)
Q Consensus 640 ~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~ 694 (1050)
.+|+++++++|++.. ..+..|.......+++.|...+.++..++|.-.
T Consensus 698 ~~l~~Al~l~P~~a~-------i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 698 HYARLVIDDIDNQAL-------ITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHhcCCCCch-------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999999999875 555677777788889999999988888877643
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.9e-25 Score=255.88 Aligned_cols=324 Identities=19% Similarity=0.175 Sum_probs=227.1
Q ss_pred hHHHHHHHhhccCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001578 365 NKKFCVTRISKSKSISVDFRLSRGIAQVNEG----KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440 (1050)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g----~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 440 (1050)
...+++.++....|++.+....+|..|...+ ..+.|..+..++++..|.+..+|..+|.++... +...++.+|..
T Consensus 360 ~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~ 438 (1018)
T KOG2002|consen 360 ESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGN 438 (1018)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHH
Confidence 3344555555555555555555555555443 345555555555555555555555555555432 22233555555
Q ss_pred HHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHH
Q 001578 441 AIQS-----NPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-----EPNS-----ADILHERGIVNFKFKDFNAAVED 505 (1050)
Q Consensus 441 al~~-----~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-----~p~~-----~~~~~~lg~~~~~~g~~~~A~~~ 505 (1050)
|+.+ .+--++.+.++|..++..|++.+|...|.+++.. +++. ....+++|.++...++++.|.+.
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 5532 1223456666777777777888888888777765 1111 22477788888888888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----------------------
Q 001578 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD---------------------- 563 (1050)
Q Consensus 506 l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~---------------------- 563 (1050)
|...++.+|....++..+|......+...+|...+..++..+..++.++..+|.++..
T Consensus 519 Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~ 598 (1018)
T KOG2002|consen 519 YKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKT 598 (1018)
T ss_pred HHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCC
Confidence 8888888888888888888777777788888888888887776666665555533321
Q ss_pred --------------------------cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 001578 564 --------------------------LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (1050)
Q Consensus 564 --------------------------~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~ 617 (1050)
.+.+++|+++|.++|..+|.+..+-..+|.++...|++.+|+.+|.++.+.-.+
T Consensus 599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~ 678 (1018)
T KOG2002|consen 599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD 678 (1018)
T ss_pred chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh
Confidence 234578888888888888888888888888998899999999999888887777
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHH
Q 001578 618 NIECLYLRASCYHAIGEYREAIKDYDAALDLEL--DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKE 695 (1050)
Q Consensus 618 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e 695 (1050)
..++|.++|.||..+|+|..|++.|+.++...- ++.+ ....+|.++|..+.+.+|..++.++..+.|.+.-
T Consensus 679 ~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~-------vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 679 FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE-------VLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH-------HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 788999999999999999999999999998754 3343 3334455666667799999999999999998775
Q ss_pred H
Q 001578 696 Y 696 (1050)
Q Consensus 696 ~ 696 (1050)
.
T Consensus 752 v 752 (1018)
T KOG2002|consen 752 V 752 (1018)
T ss_pred H
Confidence 5
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=6.8e-25 Score=274.13 Aligned_cols=397 Identities=13% Similarity=0.005 Sum_probs=263.6
Q ss_pred HhcCCHHHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 001578 47 CSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV 125 (1050)
Q Consensus 47 ~~~~~~~~Ai~~y~~ai~~~~~-~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~ 125 (1050)
.-.|++++|+..|.+++...+. ...+.++|.++...|++.+|+..++++++++|++..+++.+|.++...|++++|+..
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4689999999999999886644 345899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCCcccccccccc
Q 001578 126 WEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSR 205 (1050)
Q Consensus 126 ~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 205 (1050)
++++++..|+.
T Consensus 106 l~~~l~~~P~~--------------------------------------------------------------------- 116 (765)
T PRK10049 106 AKQLVSGAPDK--------------------------------------------------------------------- 116 (765)
T ss_pred HHHHHHhCCCC---------------------------------------------------------------------
Confidence 99884333322
Q ss_pred ccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccccCCCCCccCCC
Q 001578 206 DVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICN 285 (1050)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~~~~~~ 285 (1050)
T Consensus 117 -------------------------------------------------------------------------------- 116 (765)
T PRK10049 117 -------------------------------------------------------------------------------- 116 (765)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHHHHhhhHHHHh
Q 001578 286 GPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRN 365 (1050)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 365 (1050)
T Consensus 117 -------------------------------------------------------------------------------- 116 (765)
T PRK10049 117 -------------------------------------------------------------------------------- 116 (765)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001578 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445 (1050)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (1050)
+. ++.+|.++...|++++|+..++++++.+|+++.++..+|.++...+..++|+..++++.. .
T Consensus 117 ---------------~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~ 179 (765)
T PRK10049 117 ---------------AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-T 179 (765)
T ss_pred ---------------HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-C
Confidence 33 445566666677777777777777777777777777777777766777777766665554 3
Q ss_pred CCcH-----HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCHHHHHHH
Q 001578 446 PSAG-----EAWKRRGQARA-----ALGES---VEAIQDLSKALEFEPNSAD-------ILHERGIVNFKFKDFNAAVED 505 (1050)
Q Consensus 446 p~~~-----~~~~~la~~~~-----~~g~~---~eA~~~l~kal~~~p~~~~-------~~~~lg~~~~~~g~~~~A~~~ 505 (1050)
|... .....+..++. ..+++ ++|+..++++++..|.++. +.......+...|++++|+..
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3320 01111222221 11223 5666666666654332221 111112223455677777777
Q ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 001578 506 LSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (1050)
Q Consensus 506 l~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 580 (1050)
|+++++..+.. ..+...+|.++..+|++++|+..|+++++.+|.+ ......++.++...|++++|+..++++...
T Consensus 260 ~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 260 YQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred HHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 77766665332 2233335667777777777777777776666544 344555666666777777777777776666
Q ss_pred CCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 001578 581 DKR---------------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645 (1050)
Q Consensus 581 ~p~---------------~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 645 (1050)
.|. ...++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|++.++++
T Consensus 340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a 419 (765)
T PRK10049 340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKA 419 (765)
T ss_pred CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 542 12355666777777777777777777777777777777777777777777777777777777
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHH
Q 001578 646 LDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (1050)
Q Consensus 646 l~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~ 696 (1050)
+.++|++.. .++.++..+...+++++|...++.++...|+++..
T Consensus 420 l~l~Pd~~~-------l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 420 EVLEPRNIN-------LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HhhCCCChH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 777777664 34445555556667777777777777777776654
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=5.8e-23 Score=256.80 Aligned_cols=196 Identities=14% Similarity=0.006 Sum_probs=147.6
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHH
Q 001578 460 AALGESVEAIQDLSKALEFEPNSA-DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN----KSAYTYLGLALSSIGEYK 534 (1050)
Q Consensus 460 ~~~g~~~eA~~~l~kal~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~ 534 (1050)
...|++++|+..|+++++..|..+ .+...+|.+|...|++++|+..|++++..+|.+ ......++.++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 344555555555555555543211 122234555556666666666666655555443 234445555556666666
Q ss_pred HHHHHHHHHHHhCc-------------Cc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 001578 535 KAEEAHLKAIQLDR-------------NF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (1050)
Q Consensus 535 eA~~~l~~al~~~p-------------~~--~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 599 (1050)
+|+..++++....| ++ ..++..++.++...|++++|+..+++++...|.++.++..+|.++...|
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 66666666655544 32 4577889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH
Q 001578 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (1050)
Q Consensus 600 ~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~ 655 (1050)
++++|+..+++++.++|++..+++.+|.++...|++++|...++++++..|+++..
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999863
No 19
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.5e-24 Score=244.31 Aligned_cols=300 Identities=21% Similarity=0.224 Sum_probs=269.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 001578 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (1050)
Q Consensus 387 ~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 466 (1050)
.|......-+..+|+..|.+.-...++...++..+|.+|+.+++|++|..+|+.+-+..|-..+..-.+..++..+.+--
T Consensus 325 ~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v 404 (638)
T KOG1126|consen 325 EGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV 404 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH
Confidence 33444455577899999999777788888999999999999999999999999999999988777777788888877766
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (1050)
Q Consensus 467 eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 546 (1050)
+--.+.+..+..+|+.++.|..+|.+|..+++++.|+++|++|++++|....+|..+|.-+.....++.|..+|+.|+..
T Consensus 405 ~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 405 ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 66667778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001578 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626 (1050)
Q Consensus 547 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la 626 (1050)
+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.++-..+..|
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCC
Q 001578 627 SCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLF 693 (1050)
Q Consensus 627 ~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~ 693 (1050)
.++..++++++|+..+++.-++.|++. .+++..|..+-..|+.+.|+..|.-|.+++|.=
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es-------~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQES-------SVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchH-------HHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 999999999999999999999999886 466667777778889999999998888888863
No 20
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.9e-24 Score=229.75 Aligned_cols=311 Identities=25% Similarity=0.255 Sum_probs=272.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (1050)
+..+-..|.-++..|+|++||.+|.++++..|+.+..|.+++-||...|++++.++...++++++|+...++++++.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 34456778889999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHH------------------HHHhh--------------CC----------------------------
Q 001578 461 ALGESVEAIQDLS------------------KALEF--------------EP---------------------------- 480 (1050)
Q Consensus 461 ~~g~~~eA~~~l~------------------kal~~--------------~p---------------------------- 480 (1050)
.+|++.+|+.... +.+.. .|
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 9999888775431 11110 00
Q ss_pred ----------------------------------------CC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578 481 ----------------------------------------NS---------ADILHERGIVNFKFKDFNAAVEDLSACVK 511 (1050)
Q Consensus 481 ----------------------------------------~~---------~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 511 (1050)
.+ +.++...|..++-.|++-.|.+.++.+|.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 00 23445567777888999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 001578 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591 (1050)
Q Consensus 512 ~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l 591 (1050)
++|.+...|..+|.+|....+.++....|.+|..++|+++++|++.|++++-++++++|+.-|++++.++|++..++..+
T Consensus 355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl 434 (606)
T KOG0547|consen 355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL 434 (606)
T ss_pred cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHH
Q 001578 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD------SMEKFVLQCLAFYQ 665 (1050)
Q Consensus 592 a~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~------~~~~~~~~~~~~~~ 665 (1050)
+.+++++++++++...|+.+....|+.++++...|.++..+++|++|++.|++|+++.|. ++..++..++...+
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999998 55444443333332
Q ss_pred HHHHHHHhcCHHHHHHHHHHhhccCCCCHHHH
Q 001578 666 KEIALYTASKINSEFCWFDIDGDIDPLFKEYW 697 (1050)
Q Consensus 666 ~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w 697 (1050)
..++++.|..++.+++++||.-....
T Consensus 515 ------wk~d~~~a~~Ll~KA~e~Dpkce~A~ 540 (606)
T KOG0547|consen 515 ------WKEDINQAENLLRKAIELDPKCEQAY 540 (606)
T ss_pred ------hhhhHHHHHHHHHHHHccCchHHHHH
Confidence 34899999999999999999977654
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.7e-24 Score=241.21 Aligned_cols=284 Identities=18% Similarity=0.220 Sum_probs=268.1
Q ss_pred HHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 001578 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450 (1050)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 450 (1050)
..+-...++..-.+..+|..|++.++|++|.++|+.+-+..|-..+..-....++.++.+--+--.+.+..+..+|+.++
T Consensus 343 ~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPe 422 (638)
T KOG1126|consen 343 EKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPE 422 (638)
T ss_pred HhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcH
Confidence 33444556667888999999999999999999999999999998888888888888887766655666778899999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001578 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530 (1050)
Q Consensus 451 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 530 (1050)
.|..+|.+|..+++++.|+++|++|++++|..+.+|..+|.-+.....+|.|..+|+.|+..+|.+..+|+.+|.+|.++
T Consensus 423 sWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq 502 (638)
T KOG1126|consen 423 SWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ 502 (638)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001578 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (1050)
Q Consensus 531 g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~ 610 (1050)
++++.|+-+|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++-..+..|.++..++++++|+..+++
T Consensus 503 ek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 503 EKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEE 582 (638)
T ss_pred chhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 611 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
.-++.|+...+++.+|.+|.++|+.+.|+..|--|.+++|.-.+
T Consensus 583 Lk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 583 LKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999999999999997654
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=3.5e-22 Score=232.45 Aligned_cols=309 Identities=16% Similarity=0.088 Sum_probs=267.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHH
Q 001578 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRR 455 (1050)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 455 (1050)
.....+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 355667779999999999999999999999999999999999999999999999999999998854332 3578899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHc
Q 001578 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSI 530 (1050)
Q Consensus 456 a~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~-----~~~~~la~~~~~~ 530 (1050)
|.+|...|++++|+..|+++++..|.+..++..++.++...|++++|++.++++++..|.+. ..+..+|.++...
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999887653 3566789999999
Q ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Q 001578 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLS 609 (1050)
Q Consensus 531 g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eAi~~l~ 609 (1050)
|++++|+.+|+++++..|+...++..+|.++...|++++|+..+++++..+|.+ ..++..++.+|...|++++|+..++
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988876 4668889999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHh---
Q 001578 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDID--- 686 (1050)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a--- 686 (1050)
+++...|+... +..++.++...|++++|+..++++++..|++.... .++.........|+..+++..++..
T Consensus 274 ~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~-----~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 274 RALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH-----RLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH-----HHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 99999998754 48999999999999999999999999999876422 1122222111234666776666544
Q ss_pred -hccCCCCH
Q 001578 687 -GDIDPLFK 694 (1050)
Q Consensus 687 -~~l~p~~~ 694 (1050)
+..+|+|.
T Consensus 348 ~~~~~p~~~ 356 (389)
T PRK11788 348 QLKRKPRYR 356 (389)
T ss_pred HHhCCCCEE
Confidence 46677755
No 23
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.92 E-value=3.2e-22 Score=212.93 Aligned_cols=279 Identities=16% Similarity=0.178 Sum_probs=254.3
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHH
Q 001578 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQR--ELEAAISDFTEAIQSNPSAGEAWKR 454 (1050)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~-~~a~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~ 454 (1050)
+...+.-+..|..++++|+++.|++++.-.-+.+... ..+-.++..+++.+| ++..|..+...++.++.-++.++.+
T Consensus 416 ~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~n 495 (840)
T KOG2003|consen 416 ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTN 495 (840)
T ss_pred hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhc
Confidence 3345666788899999999999999997766555433 234455666666643 7889999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 001578 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534 (1050)
Q Consensus 455 la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 534 (1050)
.|.+.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+++|-+.-.+--++.++++.++.+|..+.+..
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 99999999999999999999999888889999999999999999999999999998888899999999999999999999
Q ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 001578 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (1050)
Q Consensus 535 eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~ 614 (1050)
+|++++.++..+-|+++.++..||.+|-+.|+-.+|.+++-......|.+.+....+|..|....-.++|+.+|+++.-+
T Consensus 576 qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH
Q 001578 615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (1050)
Q Consensus 615 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~ 656 (1050)
.|+........+.|+.+.|+|..|...|+..-...|.+.+..
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHH
Confidence 999999999999999999999999999999999999998743
No 24
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.1e-21 Score=213.09 Aligned_cols=278 Identities=17% Similarity=0.165 Sum_probs=261.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001578 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (1050)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (1050)
...+.+.....+..++..++|.+..++++..++.+|-+..++...-.++...|+..+-...-.+..+..|+.+..|+..|
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 34678899999999999999999999999999999999888766555999999999888888999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001578 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (1050)
Q Consensus 457 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA 536 (1050)
..|...|++.+|..+|-++..++|....+|...|..+...|..++|+.+|..|-++.|........+|.-|...+.++-|
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC----C---CHHHHHHHHHHHHHCCCHHHHHHHHH
Q 001578 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK----R---FSKAYHLRGLLLHGLGQHKKAIKDLS 609 (1050)
Q Consensus 537 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p----~---~~~~~~~la~~~~~~g~~~eAi~~l~ 609 (1050)
..+|.+|+.+.|.++-++..+|.+.+..+.|.+|..+|+.++..-+ . -...+.++|.++.+++.+++|+.+|+
T Consensus 400 e~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 400 EKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999984322 1 23468999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
+++.+.|.++.++..+|.+|..+|+++.|+++|.+++.++|++.-
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 999999999999999999999999999999999999999999854
No 25
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=1.3e-20 Score=195.46 Aligned_cols=319 Identities=15% Similarity=0.185 Sum_probs=257.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 001578 41 IELAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (1050)
Q Consensus 41 ~~~~~~~~~~~~~~Ai~~y~~ai~~~~-~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~ 119 (1050)
..|+++|..|++..|+..|-.||+.+| +-..++.||.+|+.+|+-..|+.+++++|++.|+..-|.+.+|.+++++|++
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 678889999999999999999999994 4566999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCCcccc
Q 001578 120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD 199 (1050)
Q Consensus 120 ~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 199 (1050)
++|..+|++.+.+.|.+....... ..+
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaq-----------skl------------------------------------------ 149 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQ-----------SKL------------------------------------------ 149 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHH-----------HHH------------------------------------------
Confidence 999999999965555432110000 000
Q ss_pred ccccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccccCCCC
Q 001578 200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD 279 (1050)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~ 279 (1050)
T Consensus 150 -------------------------------------------------------------------------------- 149 (504)
T KOG0624|consen 150 -------------------------------------------------------------------------------- 149 (504)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHHHHhh
Q 001578 280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS 359 (1050)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~ 359 (1050)
..+..
T Consensus 150 ------------------------------------------------------------------~~~~e--------- 154 (504)
T KOG0624|consen 150 ------------------------------------------------------------------ALIQE--------- 154 (504)
T ss_pred ------------------------------------------------------------------HhHHH---------
Confidence 00000
Q ss_pred hHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001578 360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439 (1050)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~ 439 (1050)
...+..+...++..|++..|+++...+++..|-++..+..++.||...|+...|+..+.
T Consensus 155 ---------------------~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk 213 (504)
T KOG0624|consen 155 ---------------------HWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLK 213 (504)
T ss_pred ---------------------HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 11223445567788999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHH
Q 001578 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER------------GIVNFKFKDFNAAVEDLS 507 (1050)
Q Consensus 440 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~l~ 507 (1050)
.+-++..++.+.++.++.+++..|+.+.++...+.+++++|+...++-.. +.-....++|.++++..+
T Consensus 214 ~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge 293 (504)
T KOG0624|consen 214 QASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGE 293 (504)
T ss_pred HHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875543221 333455677778888888
Q ss_pred HHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 001578 508 ACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (1050)
Q Consensus 508 ~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 583 (1050)
+.++.+|..+. ....+..|+...|++.+|+..+.+++..+|++..++...|.+|.....|+.|+.-|++|.+.+++
T Consensus 294 ~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 294 KVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 88888777443 33456667777788888888888888888888888888888888888888888888888888777
Q ss_pred CHHHH
Q 001578 584 FSKAY 588 (1050)
Q Consensus 584 ~~~~~ 588 (1050)
+..+.
T Consensus 374 n~~~r 378 (504)
T KOG0624|consen 374 NTRAR 378 (504)
T ss_pred cHHHH
Confidence 65543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=8.3e-19 Score=215.16 Aligned_cols=442 Identities=13% Similarity=-0.004 Sum_probs=309.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCcH-HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001578 37 ITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQ-DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA 115 (1050)
Q Consensus 37 ~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~~~~-~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~ 115 (1050)
...+.++-..+++|+|+.|+..|.++++.+|+.. ...-.+.++...|+.++|+..|++++.-+|....++..+|.+|..
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 3456888889999999999999999999996642 333777888899999999999999994334444444444889999
Q ss_pred cCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCC
Q 001578 116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKS 195 (1050)
Q Consensus 116 lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 195 (1050)
+|++++|++.|+++++..|+.+..+..+..+. . ..
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y---------~------~~------------------------------ 149 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQ---------A------DA------------------------------ 149 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH---------h------hc------------------------------
Confidence 99999999999999888887754432110000 0 00
Q ss_pred ccccccccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCccccccccccccc
Q 001578 196 DICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINR 275 (1050)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 275 (1050)
T Consensus 150 -------------------------------------------------------------------------------- 149 (822)
T PRK14574 150 -------------------------------------------------------------------------------- 149 (822)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHH
Q 001578 276 QSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDML 355 (1050)
Q Consensus 276 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~ 355 (1050)
T Consensus 150 -------------------------------------------------------------------------------- 149 (822)
T PRK14574 150 -------------------------------------------------------------------------------- 149 (822)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001578 356 KETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAI 435 (1050)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 435 (1050)
... ......+.++....|..... ..++.++...+++.+|++.++++++.+|++..++..+..++...|-...|.
T Consensus 150 ---~q~--~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 150 ---GRG--GVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred ---CCH--HHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 000 00001223334455554443 555666666778877999999999999999999999999999999988888
Q ss_pred HHHHHHHHhCCCcHHHHHHH--HHHHHHc---------C---CHHHHHHHHHHHHhhC---CCC----HHHHHHHHHHHH
Q 001578 436 SDFTEAIQSNPSAGEAWKRR--GQARAAL---------G---ESVEAIQDLSKALEFE---PNS----ADILHERGIVNF 494 (1050)
Q Consensus 436 ~~~~~al~~~p~~~~~~~~l--a~~~~~~---------g---~~~eA~~~l~kal~~~---p~~----~~~~~~lg~~~~ 494 (1050)
+...+--.........+... +.-..+. + -.+.|+..++..+... |.. ..+....-.++.
T Consensus 224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 76665322211111111111 1111111 1 2355666667766633 322 223344555667
Q ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------CcHHHHHHHHHHHHHcCCh
Q 001578 495 KFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR------NFLEAWGHLTQFYQDLANS 567 (1050)
Q Consensus 495 ~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p------~~~~~~~~la~~~~~~g~~ 567 (1050)
..+++.+++..|+.+.... +--..+....|..|...++.++|+.+|.+++.-.| ........|..+|...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 7888888888888776544 22345677788888888888888888888877552 2233346677788888888
Q ss_pred HHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 001578 568 EKALECLQQVLYIDK---------------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632 (1050)
Q Consensus 568 ~~A~~~l~~al~~~p---------------~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~ 632 (1050)
++|..++++.....| +...+...++.++...|++.+|.+.+++.+...|.|+.++..+|.++...
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~R 463 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLAR 463 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 888888888876433 22456777788888888888888888888888888888888888888888
Q ss_pred cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHH
Q 001578 633 GEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (1050)
Q Consensus 633 g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~ 696 (1050)
|.+.+|...++.+..++|++.. +.+.++.+...++++.+|....+...+..|+.+..
T Consensus 464 g~p~~A~~~~k~a~~l~P~~~~-------~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 464 DLPRKAEQELKAVESLAPRSLI-------LERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred CCHHHHHHHHHHHhhhCCccHH-------HHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 8888888888888888888764 45566777777788888888888888888887654
No 27
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.88 E-value=1.4e-20 Score=195.04 Aligned_cols=315 Identities=17% Similarity=0.225 Sum_probs=279.7
Q ss_pred ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001578 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454 (1050)
Q Consensus 375 ~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 454 (1050)
...|.++.-++.+|..++..|++.+|+..|..+++.+|++..+++.+|.+|..+|+-..|+..+.+++++.|+...+...
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HH------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001578 455 RGQARAALGESVEAIQDLSKALEFEPNSA---DI------------LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519 (1050)
Q Consensus 455 la~~~~~~g~~~eA~~~l~kal~~~p~~~---~~------------~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 519 (1050)
.|.+++.+|++++|...|+.++..+|.+. ++ +......+...|++..|+++....+++.|-++..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence 99999999999999999999999999542 22 2223344556799999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH---------
Q 001578 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL--------- 590 (1050)
Q Consensus 520 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~--------- 590 (1050)
+...+.+|...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++-..+-.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987543221
Q ss_pred ---HHHHHHHCCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001578 591 ---RGLLLHGLGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF 663 (1050)
Q Consensus 591 ---la~~~~~~g~~~eAi~~l~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~ 663 (1050)
-+......++|.++++..++.++.+|..+. ....+..|+..-|++-+|+....++++++|++.+ ++
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~-------~l 344 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ-------VL 344 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH-------HH
Confidence 134455678999999999999999998544 4445778899999999999999999999999875 56
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHH
Q 001578 664 YQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (1050)
Q Consensus 664 ~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~ 696 (1050)
..++.++.....|+.|+..|+++.+.++.+...
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 677788888889999999999999999998876
No 28
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=4.7e-20 Score=214.60 Aligned_cols=274 Identities=19% Similarity=0.121 Sum_probs=248.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHH
Q 001578 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERG 490 (1050)
Q Consensus 415 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~----~~~~~~lg 490 (1050)
....+.+|..+...|++++|+..|.++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 44566778899999999999999999999999999999999999999999999999999998864332 35788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-----HHHHHHHHHHHHcC
Q 001578 491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL-----EAWGHLTQFYQDLA 565 (1050)
Q Consensus 491 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~-----~~~~~la~~~~~~g 565 (1050)
.+|...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|... ..+..+|.++...|
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999887653 35678899999999
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHH
Q 001578 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYDA 644 (1050)
Q Consensus 566 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~ 644 (1050)
++++|+.+|+++++..|+...++..+|.++...|++++|+..+++++..+|.+ ..++..++.+|...|++++|...+++
T Consensus 195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876 46788999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHH
Q 001578 645 ALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (1050)
Q Consensus 645 al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~ 696 (1050)
+++..|+... +...+..+...+++++|+..|..+++..|+...+
T Consensus 275 ~~~~~p~~~~--------~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~ 318 (389)
T PRK11788 275 ALEEYPGADL--------LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGF 318 (389)
T ss_pred HHHhCCCchH--------HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHH
Confidence 9999997632 2556777888899999999999999999987755
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=2.7e-19 Score=190.85 Aligned_cols=264 Identities=18% Similarity=0.152 Sum_probs=233.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001578 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARAALG--ESVEAIQDLSKALEFEPNSADILHERGIV 492 (1050)
Q Consensus 416 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g--~~~eA~~~l~kal~~~p~~~~~~~~lg~~ 492 (1050)
+.-...+-.+++.|+++.|++.+.-.-..+... ..+-.++..+++.+| ++..|..+...++.++.-++.++.+.|.+
T Consensus 420 dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 420 DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNI 499 (840)
T ss_pred hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence 344667888999999999999887655444332 334455666666543 78999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHH
Q 001578 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572 (1050)
Q Consensus 493 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 572 (1050)
.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+.+|-+.-.+--++.++++.++.+|..+.+..+|++
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 001578 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (1050)
Q Consensus 573 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 652 (1050)
++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+....||..|....-.++|+.+|+++.-+.|+.
T Consensus 580 ~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 580 LLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred HHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 001578 653 MEKFVLQCLAFYQKEIALYTASKINSEFCWFDID 686 (1050)
Q Consensus 653 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a 686 (1050)
.. .....+.|+.+.|+|.+|+..|+..
T Consensus 660 ~k-------wqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 660 SK-------WQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HH-------HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 53 2334566777889999999988533
No 30
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.8e-20 Score=198.77 Aligned_cols=309 Identities=15% Similarity=0.076 Sum_probs=272.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~-~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (1050)
.-.-+.++.++......++++.-++..... .|++...-...|.+.+.+.++++|+..|+...+.+|-..+-......++
T Consensus 227 ~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L 306 (559)
T KOG1155|consen 227 WMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH
Confidence 334455666777777899999999998887 8888888899999999999999999999999999998877777777777
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001578 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539 (1050)
Q Consensus 460 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 539 (1050)
+-.++-.+---+.+.+..++.-.++....+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+.+...|+..
T Consensus 307 Yv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 307 YVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHH
Confidence 77777666666667778888888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Q 001578 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619 (1050)
Q Consensus 540 l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~ 619 (1050)
|++|++++|.+..+|+.+|++|.-++-..=|+-+|++|+...|.++..|..+|.||.++++.++|+++|.+++.....+.
T Consensus 387 YRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 387 YRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred HHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC
Q 001578 620 ECLYLRASCYHAIGEYREAIKDYDAALDLE-------LDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPL 692 (1050)
Q Consensus 620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~-------p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~ 692 (1050)
.++..+|.+|.++++..+|..+|++.++.. |+-.. +...++.-....+++++|-.+...+...++.
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k-------a~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK-------ARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH-------HHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 999999999999999999999999999843 22221 2222555566778999999988888777666
Q ss_pred CHHH
Q 001578 693 FKEY 696 (1050)
Q Consensus 693 ~~e~ 696 (1050)
-.+.
T Consensus 540 ~eea 543 (559)
T KOG1155|consen 540 CEEA 543 (559)
T ss_pred HHHH
Confidence 5554
No 31
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.7e-20 Score=204.37 Aligned_cols=319 Identities=21% Similarity=0.277 Sum_probs=226.7
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001578 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (1050)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (1050)
+...+..+|.+.-.+..+..++...|+|++|++--.+..+++|..+..|..+|.++.-+|+|++|+..|.+.|+.+|++.
T Consensus 25 ~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~ 104 (539)
T KOG0548|consen 25 FTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNK 104 (539)
T ss_pred HHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchH
Confidence 34444555555556666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCC------------------------HHHHHHHHHHHHhhCCCC-----------------------
Q 001578 450 EAWKRRGQARAALGE------------------------SVEAIQDLSKALEFEPNS----------------------- 482 (1050)
Q Consensus 450 ~~~~~la~~~~~~g~------------------------~~eA~~~l~kal~~~p~~----------------------- 482 (1050)
..+..++.++..... .+.+.....+.+..+|.+
T Consensus 105 ~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~ 184 (539)
T KOG0548|consen 105 QLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDEL 184 (539)
T ss_pred HHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccc
Confidence 665555555421100 000000000000000000
Q ss_pred ---------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001578 483 ---------------------------------------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523 (1050)
Q Consensus 483 ---------------------------------------~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l 523 (1050)
+.....+|...+...++..|++.|..++.++ .+...+.+.
T Consensus 185 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~ 263 (539)
T KOG0548|consen 185 LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNI 263 (539)
T ss_pred cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHH
Confidence 1123455666667777777888888888887 777777778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCc-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--------------
Q 001578 524 GLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYIDK-------------- 582 (1050)
Q Consensus 524 a~~~~~~g~~~eA~~~l~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p-------------- 582 (1050)
+.+|+..|.+.+.+.....+++..... ..+...+|..|...++++.|+.+|++++....
T Consensus 264 aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~ 343 (539)
T KOG0548|consen 264 AAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKA 343 (539)
T ss_pred HHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Confidence 888888888887777777777665443 22334466678888999999999999876432
Q ss_pred ------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC
Q 001578 583 ------------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (1050)
Q Consensus 583 ------------~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 650 (1050)
.-..-....|..++..|+|..|+.+|.+++..+|+++.+|.++|.||..+|.+..|+...+++++++|
T Consensus 344 ~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p 423 (539)
T KOG0548|consen 344 LKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP 423 (539)
T ss_pred HHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc
Confidence 22233456699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHH
Q 001578 651 DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (1050)
Q Consensus 651 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~ 696 (1050)
+.. .+|+++|.+++...+|+.|+..|..+++++|...++
T Consensus 424 ~~~-------kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 424 NFI-------KAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred hHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 876 478888999999999999999999999999999998
No 32
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6e-20 Score=202.97 Aligned_cols=258 Identities=18% Similarity=0.210 Sum_probs=238.3
Q ss_pred HHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 001578 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450 (1050)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 450 (1050)
..+...+|.+...+...--++...|+..+-..+-.+..+.+|+.+-.|+..|..|+..|++.+|..+|.++..++|....
T Consensus 268 ~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp 347 (611)
T KOG1173|consen 268 EELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP 347 (611)
T ss_pred HHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH
Confidence 55567778777777555559999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001578 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530 (1050)
Q Consensus 451 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 530 (1050)
+|...|..+...|+.++|+.+|..|-++.|........+|.-|...++++-|..+|.+|+.+.|.++-.+..+|.+.+..
T Consensus 348 aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~ 427 (611)
T KOG1173|consen 348 AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTY 427 (611)
T ss_pred HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehH
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCcC-------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Q 001578 531 GEYKKAEEAHLKAIQLDRN-------FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603 (1050)
Q Consensus 531 g~~~eA~~~l~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e 603 (1050)
+.|.+|..+|+.++..-+. -...+.+||.++.+++.+++|+.+|++++.+.|.++.++..+|.+|..+|+++.
T Consensus 428 ~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 428 EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDK 507 (611)
T ss_pred hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHH
Confidence 9999999999999954322 245688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHH
Q 001578 604 AIKDLSSGLGIDPSNIECLYLRASC 628 (1050)
Q Consensus 604 Ai~~l~~al~~~p~~~~~~~~la~~ 628 (1050)
|+.+|.+++.+.|++..+--.|+.+
T Consensus 508 Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 508 AIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999999987666555533
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=6.8e-20 Score=197.59 Aligned_cols=275 Identities=18% Similarity=0.175 Sum_probs=255.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001578 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (1050)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (1050)
.|.+...-...|.+.+.+.++++|+..|+.+.+.+|...+-+-....+++-..+-.+-.-..+.+..++.-.++....+|
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIa 337 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIA 337 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeeh
Confidence 67778888889999999999999999999999999998888888888888777766666666778888888889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001578 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (1050)
Q Consensus 457 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA 536 (1050)
..|...++.++|+.+|+++++++|....+|..+|.-|..+++...|++.|++|++++|.+..+|+.+|.+|..++...=|
T Consensus 338 NYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---
Q 001578 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG--- 613 (1050)
Q Consensus 537 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~--- 613 (1050)
+-+|++|++..|++...|..||.+|.++++.++|+++|.+++........++..+|.+|.++++.++|..+|++.++
T Consensus 418 LyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~ 497 (559)
T KOG1155|consen 418 LYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE 497 (559)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999998
Q ss_pred ----cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578 614 ----IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (1050)
Q Consensus 614 ----~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 651 (1050)
..|+...+..-||.-+.+.+++++|-.+...++.-++.
T Consensus 498 ~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 498 LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 45656678888999999999999999999998887544
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=3.9e-18 Score=190.03 Aligned_cols=323 Identities=16% Similarity=0.093 Sum_probs=292.7
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001578 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (1050)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (1050)
.+.-..++.-+..+...+.++-|+..|..+++.+|..-..|...+..-...|..++-..++++++...|.....|...+.
T Consensus 513 ed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ak 592 (913)
T KOG0495|consen 513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAK 592 (913)
T ss_pred chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHH
Confidence 34456788889999999999999999999999999999999998888888899999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001578 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (1050)
Q Consensus 458 ~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 537 (1050)
.+...|+...|...+.++++.+|++.++++....+.....+++.|..+|.++....|. ..+|+.-+.+...++..++|+
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887664 567888888888999999999
Q ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 001578 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (1050)
Q Consensus 538 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~ 617 (1050)
.+++++++..|+....|..+|+++.++++.+.|...|...+...|..+..|..++.+-...|+.-.|...++++.-.+|.
T Consensus 672 rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk 751 (913)
T KOG0495|consen 672 RLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK 751 (913)
T ss_pred HHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH-----------------------HHHHHHHHHHHHhc
Q 001578 618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC-----------------------LAFYQKEIALYTAS 674 (1050)
Q Consensus 618 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~-----------------------~~~~~~g~~~~~~~ 674 (1050)
+...|......-.+.|+.+.|.....+|++-.|++...|.... ..+...+..++...
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998866543211 23455577788899
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHhhc
Q 001578 675 KINSEFCWFDIDGDIDPLFKEYWCKRL 701 (1050)
Q Consensus 675 ~~~~A~~~l~~a~~l~p~~~e~w~~r~ 701 (1050)
+++.|..+|.++...+|++-+.|++-+
T Consensus 832 k~~kar~Wf~Ravk~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKDPDNGDAWAWFY 858 (913)
T ss_pred HHHHHHHHHHHHHccCCccchHHHHHH
Confidence 999999999999999999999997654
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=5e-18 Score=197.16 Aligned_cols=299 Identities=15% Similarity=0.128 Sum_probs=236.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHH
Q 001578 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKR 454 (1050)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~ 454 (1050)
+.+.|..++....++|++.+|+-+|.++++.+|.+....+..+.+|.+.|++..|...|.++++..|.. .+.-..
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 357788899999999999999999999999999999999999999999999999999999999999932 123345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------------
Q 001578 455 RGQARAALGESVEAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKL--DKE--------------- 515 (1050)
Q Consensus 455 la~~~~~~g~~~eA~~~l~kal~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~--~p~--------------- 515 (1050)
.+..+...++-+.|++.++.++.... ...+-+..++.+++....++.|+......... .++
T Consensus 286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 57788888888999999999998432 23456778899999999999999888766551 011
Q ss_pred -----------CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 001578 516 -----------NKSA-YTYLGLALSSIGEYKKAEEAHLKAIQLDR-NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (1050)
Q Consensus 516 -----------~~~~-~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 582 (1050)
+..+ ...++.+....+...+++..+..--...| +.++.+..++.+|...|++.+|+.+|..+....+
T Consensus 366 ~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~ 445 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG 445 (895)
T ss_pred ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence 1122 44455555555555555555443322224 4478999999999999999999999999987765
Q ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHH
Q 001578 583 -RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD--SMEKFVLQ 659 (1050)
Q Consensus 583 -~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~--~~~~~~~~ 659 (1050)
++..+|+.+|.||..+|.+++|++.|++++...|++.++...|+.++.++|+.++|.+.+.....-++. ...++...
T Consensus 446 ~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e 525 (895)
T KOG2076|consen 446 YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPE 525 (895)
T ss_pred ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHH
Confidence 446789999999999999999999999999999999999999999999999999999999988733322 23334444
Q ss_pred HHHHHHHHHHHHHhcCHHH
Q 001578 660 CLAFYQKEIALYTASKINS 678 (1050)
Q Consensus 660 ~~~~~~~g~~~~~~~~~~~ 678 (1050)
....+.+...+...|+.++
T Consensus 526 ~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 526 RRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHHHhhhHHH
Confidence 4455667777777787766
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.84 E-value=7e-21 Score=210.62 Aligned_cols=264 Identities=20% Similarity=0.225 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578 383 FRLSRGIAQVNEGKYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (1050)
Q Consensus 383 ~~~~~a~~~~~~g~~~~Ai~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (1050)
..+.+|..++..|++++|++++.+.+.. .|+++..+..+|.+....++++.|+..|++++..++..+..+..++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 3456799999999999999999776544 488899999999999999999999999999999999999888888888 7
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 001578 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKAEE 538 (1050)
Q Consensus 461 ~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~eA~~ 538 (1050)
..+++++|+.+++++.+..+ ++..+.....++...++++++...++++.... +.++..+..+|.++...|+.++|+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988765 67777888889999999999999999987655 6788999999999999999999999
Q ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 001578 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (1050)
Q Consensus 539 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~ 618 (1050)
.|+++++.+|++..+...++.++...|+++++...+.......|.++..+..+|.++..+|++++|+.+|++++..+|++
T Consensus 168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578 619 IECLYLRASCYHAIGEYREAIKDYDAALDL 648 (1050)
Q Consensus 619 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l 648 (1050)
+..+..+|.++...|+.++|..++++++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999998763
No 37
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.7e-17 Score=173.85 Aligned_cols=295 Identities=18% Similarity=0.131 Sum_probs=273.5
Q ss_pred hhHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001578 359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF 438 (1050)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~ 438 (1050)
.+..++..-++.......-+.+...+..+|.+++..|++.+|+-.|+++...+|....+.-..|.++...|+++.-....
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~ 289 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM 289 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH
Confidence 34445556667777788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001578 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518 (1050)
Q Consensus 439 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~ 518 (1050)
...+........-|+--+...+..+++..|+.+-+++++.+|.+..++...|.++...++.++|+-.|+.+..+.|...+
T Consensus 290 ~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~ 369 (564)
T KOG1174|consen 290 DYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE 369 (564)
T ss_pred HHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH
Confidence 99999888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH-HHH-HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001578 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT-QFY-QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (1050)
Q Consensus 519 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la-~~~-~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 596 (1050)
.|..+-.+|...|++.+|...-+.++...|.++.++..+| .++ ..-.--++|.+.+++++.+.|....+-..+|.++.
T Consensus 370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 370 IYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ 449 (564)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998886 333 33344689999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578 597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 597 ~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
..|.+.+++..+++.+...|+ ...+..+|.++...+.+++|+++|..|+.++|++..
T Consensus 450 ~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred hhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 999999999999999998887 478899999999999999999999999999999854
No 38
>PRK12370 invasion protein regulator; Provisional
Probab=99.84 E-value=2.6e-18 Score=207.39 Aligned_cols=266 Identities=14% Similarity=0.003 Sum_probs=208.9
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCc
Q 001578 381 VDFRLSRGIAQVNE---GKYASAISIFDQILKEDPMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSNPSA 448 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~---g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~ 448 (1050)
+..++..|...+.. +++++|+.+|+++++.+|+++.++..+|.++... +++++|+..++++++++|++
T Consensus 258 a~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~ 337 (553)
T PRK12370 258 STMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN 337 (553)
T ss_pred HHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC
Confidence 33456667655543 3567899999999999999998888888877644 33788888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001578 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (1050)
Q Consensus 449 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 528 (1050)
+.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~ 417 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888777667777777
Q ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 001578 529 SIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607 (1050)
Q Consensus 529 ~~g~~~eA~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~ 607 (1050)
..|++++|+..+++++... |+++.++..+|.++...|++++|...+.++....|....+...++..|...|+ +|...
T Consensus 418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~ 495 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPT 495 (553)
T ss_pred hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHH
Confidence 7888888888888888775 67788888888888888888888888888887778777788888888887773 67777
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (1050)
Q Consensus 608 l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 649 (1050)
+++.++.......-....+.+|.-.|+.+.|... +++.+..
T Consensus 496 l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 496 IREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7766654333332333377777778887777776 6665543
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=6.5e-18 Score=196.25 Aligned_cols=300 Identities=22% Similarity=0.234 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (1050)
...++..|..++..|++++|..++.++++.+|.++.+|+.+|.+|.++|+.++|....-.|-.++|.+.+.|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 56778888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHH
Q 001578 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSIGEYKK 535 (1050)
Q Consensus 461 ~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~-----~~~~~la~~~~~~g~~~e 535 (1050)
.+|++.+|.-+|.+|++.+|.+....+..+.+|.+.|+...|...|.+++...|... ......+..+...++-+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999999999999988321 223344666777777788
Q ss_pred HHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh----------------------------------
Q 001578 536 AEEAHLKAIQLD--RNFLEAWGHLTQFYQDLANSEKALECLQQVLY---------------------------------- 579 (1050)
Q Consensus 536 A~~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~---------------------------------- 579 (1050)
|++.++.++... ....+.+..++.++.....++.|.........
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 888888887732 22234445566666666666666555444322
Q ss_pred ---------------------------hC--C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Q 001578 580 ---------------------------ID--K-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-NIECLYLRASC 628 (1050)
Q Consensus 580 ---------------------------~~--p-~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~-~~~~~~~la~~ 628 (1050)
.+ + +.+..+..++.+|...|++.+|+.+|..+....+. +..+|+.+|.|
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 01 1 23456778888888888888888888888776553 35688888888
Q ss_pred HHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 001578 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (1050)
Q Consensus 629 ~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~ 687 (1050)
|..+|.+++|+++|++++.+.|++.++.+. ++..+..+|+.++|...+....
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~-------Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARIT-------LASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhh-------HHHHHHhcCCHHHHHHHHhccc
Confidence 888888888888888888888888875544 3444555678888888776554
No 40
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=1.4e-16 Score=195.70 Aligned_cols=397 Identities=11% Similarity=-0.019 Sum_probs=307.0
Q ss_pred HhcCCHHHHHHHHHHHHhccCCcHHHH--HHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Q 001578 47 CSLRNWSKAIRILDSLLAQSYEIQDIC--NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALS 124 (1050)
Q Consensus 47 ~~~~~~~~Ai~~y~~ai~~~~~~~~~~--nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~ 124 (1050)
...|++++|+.++++++... +...+. ..|.+|..+|++++|+..++++++.+|++..+++.++.++...++.++|++
T Consensus 79 ~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 79 GWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred HHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 46799999999999999322 233334 447799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCCccccccccc
Q 001578 125 VWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQS 204 (1050)
Q Consensus 125 ~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 204 (1050)
.++++....|.. ... ..+ .....
T Consensus 158 ~l~~l~~~dp~~--------------~~~-l~l--ayL~~---------------------------------------- 180 (822)
T PRK14574 158 QATELAERDPTV--------------QNY-MTL--SYLNR---------------------------------------- 180 (822)
T ss_pred HHHHhcccCcch--------------HHH-HHH--HHHHH----------------------------------------
Confidence 999995444431 100 000 00000
Q ss_pred cccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccccCCCCCccCC
Q 001578 205 RDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDIC 284 (1050)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~~~~~ 284 (1050)
T Consensus 181 -------------------------------------------------------------------------------- 180 (822)
T PRK14574 181 -------------------------------------------------------------------------------- 180 (822)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHHHHhhhHHHH
Q 001578 285 NGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKR 364 (1050)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~ 364 (1050)
......
T Consensus 181 --------------------------------------------------------------------------~~~~~~ 186 (822)
T PRK14574 181 --------------------------------------------------------------------------ATDRNY 186 (822)
T ss_pred --------------------------------------------------------------------------hcchHH
Confidence 000000
Q ss_pred hHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHc---------C---C
Q 001578 365 NKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL--IGRGTARAFQ---------R---E 430 (1050)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~--~~la~~~~~~---------g---~ 430 (1050)
.....+.++....|.+.+++..+...+...|-...|.+...+--.........+ ...+.-..+. . -
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 012245666788999999999999999999999999977665332221111111 1111111111 1 2
Q ss_pred HHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHH
Q 001578 431 LEAAISDFTEAIQSNPSAG-------EAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAA 502 (1050)
Q Consensus 431 ~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~eA~~~l~kal~~~-p~~~~~~~~lg~~~~~~g~~~~A 502 (1050)
.+.|+..++..+...+..+ .+....-.++...|++.+++..|+.+.... |--..+....|..|+..+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 4567778888887443322 234455667778899999999999887654 22355788899999999999999
Q ss_pred HHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------------CcHHHHHHHHHHH
Q 001578 503 VEDLSACVKLDK------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR---------------NFLEAWGHLTQFY 561 (1050)
Q Consensus 503 ~~~l~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p---------------~~~~~~~~la~~~ 561 (1050)
+.+|+.++.-.| ........|..++...+++++|..++++..+..| +...+...++.++
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 999999988653 2334457788999999999999999999988544 3367788899999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 001578 562 QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD 641 (1050)
Q Consensus 562 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 641 (1050)
...|++.+|.+.+++.+...|.+..++..+|.++...|.+.+|...++.+..++|++..+...+|.++..+|++.+|...
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHH
Q 001578 642 YDAALDLELDSMEK 655 (1050)
Q Consensus 642 ~~~al~l~p~~~~~ 655 (1050)
.+.+++..|+++..
T Consensus 507 ~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 507 TDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHhhCCCchhH
Confidence 99999999999863
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=1.3e-15 Score=170.11 Aligned_cols=316 Identities=15% Similarity=0.088 Sum_probs=175.5
Q ss_pred HhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 001578 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451 (1050)
Q Consensus 372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 451 (1050)
++....|.....++..+..+...|+...|..++.++++.+|++.+.++..-.+.....+++.|..+|.++....|. ..+
T Consensus 575 kav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv 653 (913)
T KOG0495|consen 575 KAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERV 653 (913)
T ss_pred HHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chh
Confidence 3334444444444444544445555555555555555555555555544444444445555555555554443332 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001578 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531 (1050)
Q Consensus 452 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 531 (1050)
|+.-+.....+++.++|+.+++++++..|+...+|..+|+++...++.+.|.+.|...++..|.....|..++.+-...|
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 44444444444555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001578 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (1050)
Q Consensus 532 ~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~a 611 (1050)
..-.|...++++.-.+|.+...|.....+-.+.|+.+.|...+.+|++..|.+...|..-..+.-.-++-..++..+++
T Consensus 734 ~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk- 812 (913)
T KOG0495|consen 734 QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK- 812 (913)
T ss_pred chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh-
Confidence 5555555555555555555555554444455555555555555555555554444444333333333333333332222
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCC
Q 001578 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDP 691 (1050)
Q Consensus 612 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p 691 (1050)
...++.++...|.++....++++|.+.|.+++..+|++.++|......+ ...|.-+.-...|++...-+|
T Consensus 813 ---ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfe-------l~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 813 ---CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFE-------LRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred ---ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHH-------HHhCCHHHHHHHHHHHhccCC
Confidence 3445667888999999999999999999999999999999765332222 234556666778888888999
Q ss_pred CCHHHHHh
Q 001578 692 LFKEYWCK 699 (1050)
Q Consensus 692 ~~~e~w~~ 699 (1050)
.+-+.|+.
T Consensus 883 ~hG~~W~a 890 (913)
T KOG0495|consen 883 THGELWQA 890 (913)
T ss_pred CCCcHHHH
Confidence 99999953
No 42
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.5e-17 Score=171.88 Aligned_cols=243 Identities=14% Similarity=0.119 Sum_probs=196.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001578 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464 (1050)
Q Consensus 385 ~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 464 (1050)
..+|.+|+..|-+.+|...++..++..| .++.+..++.+|....+...|+..|...++..|.+...+...|+++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 5678888888888888888888887765 477788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (1050)
Q Consensus 465 ~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 544 (1050)
+++|.++|+.+++.+|.+.++...+|.-|+.-++++-|+.+|++.++..-.+++.+.++|.|++..++++-++..|++++
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 88888888888888888888877788888888888888888888888888888888888888888888888888888887
Q ss_pred HhCcC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Q 001578 545 QLDRN---FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621 (1050)
Q Consensus 545 ~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~ 621 (1050)
....+ -.++|+++|.+....|++..|..+|+-++..++++.+++.++|.+-.+.|+.++|..++..|-...|+-.+.
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 76442 267788888888888888888888888888888888888888888888888888888888888888877666
Q ss_pred HHHHHHH
Q 001578 622 LYLRASC 628 (1050)
Q Consensus 622 ~~~la~~ 628 (1050)
.++++.+
T Consensus 466 ~~Nl~~~ 472 (478)
T KOG1129|consen 466 TTNLQFM 472 (478)
T ss_pred ccceeEE
Confidence 6665543
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=99.81 E-value=1.6e-17 Score=200.66 Aligned_cols=229 Identities=15% Similarity=0.113 Sum_probs=204.8
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHH
Q 001578 418 LIGRGTARAFQ---RELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSADI 485 (1050)
Q Consensus 418 ~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~eA~~~l~kal~~~p~~~~~ 485 (1050)
++..|..+... +.+++|+..|+++++++|+++.++..+|.++... +++++|+..++++++++|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 34445443332 4568999999999999999999999999987744 34899999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC
Q 001578 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (1050)
Q Consensus 486 ~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g 565 (1050)
+..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888777777788899
Q ss_pred ChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 001578 566 NSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (1050)
Q Consensus 566 ~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 644 (1050)
++++|+..+++++... |+++.++..+|.++..+|++++|+..+.+.....|....+...++..|...|+ +|...+++
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ 498 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIRE 498 (553)
T ss_pred CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHH
Confidence 9999999999999875 78899999999999999999999999999999999988999999999998885 67776666
Q ss_pred HHHh
Q 001578 645 ALDL 648 (1050)
Q Consensus 645 al~l 648 (1050)
.++.
T Consensus 499 ll~~ 502 (553)
T PRK12370 499 FLES 502 (553)
T ss_pred HHHH
Confidence 6554
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.81 E-value=5.7e-17 Score=188.77 Aligned_cols=300 Identities=14% Similarity=0.025 Sum_probs=255.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQAR 459 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 459 (1050)
.......|...+..|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|+.. .+....+.++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 445678899999999999999999999999999888899999999999999999999999999999885 5666679999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHH
Q 001578 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT----YLGLALSSIGEYKK 535 (1050)
Q Consensus 460 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~----~la~~~~~~g~~~e 535 (1050)
...|+++.|...+++.++..|+++.++..++.++...|++++|++.+.+..+....++..+. ....-+...+..++
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999988655443322 22222244455556
Q ss_pred HHHHHHHHHHhCc----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHCCCHHHHHHHHH
Q 001578 536 AEEAHLKAIQLDR----NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY--HLRGLLLHGLGQHKKAIKDLS 609 (1050)
Q Consensus 536 A~~~l~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~--~~la~~~~~~g~~~eAi~~l~ 609 (1050)
+...+.++....| +++.++..++..+...|++++|...++++++..|++.... ..........++.+.+++.++
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 6678888888777 5899999999999999999999999999999999887532 223333445688999999999
Q ss_pred HHHhcCCCCH--HHHHHHHHHHHHccCHHHHHHHHH--HHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 001578 610 SGLGIDPSNI--ECLYLRASCYHAIGEYREAIKDYD--AALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDI 685 (1050)
Q Consensus 610 ~al~~~p~~~--~~~~~la~~~~~~g~~~eA~~~~~--~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~ 685 (1050)
++++..|+++ ..+..+|.++...|++++|.++|+ .+++..|++.. +...|..+...|+.++|..++++
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~--------~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND--------LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999 889999999999999999999999 68888887653 33568888899999999999987
Q ss_pred hhc
Q 001578 686 DGD 688 (1050)
Q Consensus 686 a~~ 688 (1050)
++.
T Consensus 396 ~l~ 398 (409)
T TIGR00540 396 SLG 398 (409)
T ss_pred HHH
Confidence 644
No 45
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.80 E-value=1.5e-16 Score=182.05 Aligned_cols=287 Identities=16% Similarity=0.129 Sum_probs=246.5
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001578 368 FCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446 (1050)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~-~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 446 (1050)
..+++....+|.++.+.+.++..|..+++.+.|..+.+++++. ..+++.+|..+|.++-..+++.+|+...+.++...|
T Consensus 465 qale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 465 QALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 3566777889999999999999999999999999999999999 456789999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 001578 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---------DILHERGIVNFKFKDFNAAVEDLSACVKL----- 512 (1050)
Q Consensus 447 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~---------~~~~~lg~~~~~~g~~~~A~~~l~~al~~----- 512 (1050)
++.........+-...++.++|+..+...+.+-.... ......+.+....++..+|+..++++..+
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 9887777777777778999999999888877643222 22223333344445666666666655432
Q ss_pred ----------------CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHH
Q 001578 513 ----------------DKEN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571 (1050)
Q Consensus 513 ----------------~p~~-----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 571 (1050)
.|+. ...|...+..+...+..++|..++.++-.++|..+..|+..|.++...|+..+|.
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHH
Confidence 1111 2456678888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578 572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK--DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (1050)
Q Consensus 572 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~--~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 649 (1050)
+.|..++.++|+++.....+|.++.+.|+..-|.. .+..+++++|.++++|+.+|.++.++|+.++|.++|..|++++
T Consensus 705 ~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 705 EAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999888888 9999999999999999999999999999999999999999999
Q ss_pred CCCHH
Q 001578 650 LDSME 654 (1050)
Q Consensus 650 p~~~~ 654 (1050)
+.+|-
T Consensus 785 ~S~PV 789 (799)
T KOG4162|consen 785 ESNPV 789 (799)
T ss_pred cCCCc
Confidence 98874
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=2.2e-19 Score=198.73 Aligned_cols=268 Identities=21% Similarity=0.202 Sum_probs=121.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 001578 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487 (1050)
Q Consensus 410 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~ 487 (1050)
..|. . ..+.+|.+++..|++++|++.+.+.+.. .|++...|..+|.+....++++.|+..|++++..++.++..+.
T Consensus 5 ~~~~-~-~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~ 82 (280)
T PF13429_consen 5 FGPS-E-EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYE 82 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc-c-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4455 2 3346799999999999999999766544 4889999999999999999999999999999999998888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcC
Q 001578 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--RNFLEAWGHLTQFYQDLA 565 (1050)
Q Consensus 488 ~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~~~~la~~~~~~g 565 (1050)
.++.+ ...+++++|+.++.++.+..+ ++..+..+..++...++++++...+.++.... +.++..+..+|.++.+.|
T Consensus 83 ~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 83 RLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred ccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 88888 799999999999999988764 46667778888999999999999999987655 677899999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 001578 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645 (1050)
Q Consensus 566 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 645 (1050)
+.++|+.+|++++..+|+++.+...++.++...|+++++...+.......|.++..+..+|.++..+|++++|+.+|+++
T Consensus 161 ~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccc
Confidence 99999999999999999999999999999999999999999999988888888999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 001578 646 LDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGD 688 (1050)
Q Consensus 646 l~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~ 688 (1050)
+..+|+++. .....+.++...|+.++|...+.++..
T Consensus 241 ~~~~p~d~~-------~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 241 LKLNPDDPL-------WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHSTT-HH-------HHHHHHHHHT-----------------
T ss_pred ccccccccc-------ccccccccccccccccccccccccccc
Confidence 999999986 445566777778899999988876643
No 47
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=9e-18 Score=179.20 Aligned_cols=368 Identities=18% Similarity=0.196 Sum_probs=273.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 001578 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113 (1050)
Q Consensus 35 ~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~ 113 (1050)
.+...+.+++.+++...|..|+..|+.||... .+...|.|||.++..+++|++|.-+++..+.++|...+++.+.++|+
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH 127 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence 45566788999999999999999999999999 55666899999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCC
Q 001578 114 SALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHN 193 (1050)
Q Consensus 114 ~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (1050)
..+++..+|...|+.. .+ . .+.+.+ ..+
T Consensus 128 ~a~~~~i~A~~~~~~~---~~-----~-----------~~anal-----~~~---------------------------- 155 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSK---QA-----Y-----------KAANAL-----PTL---------------------------- 155 (486)
T ss_pred hhhHHHHHHHHHhhhh---hh-----h-----------HHhhhh-----hhh----------------------------
Confidence 9999999999877633 00 0 000111 000
Q ss_pred CCccccccccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCccccccccccc
Q 001578 194 KSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEI 273 (1050)
Q Consensus 194 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 273 (1050)
. ......
T Consensus 156 --------------------------------------~---~~~~s~-------------------------------- 162 (486)
T KOG0550|consen 156 --------------------------------------E---KLAPSH-------------------------------- 162 (486)
T ss_pred --------------------------------------h---cccccc--------------------------------
Confidence 0 000000
Q ss_pred ccCCCCCccCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhH
Q 001578 274 NRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWD 353 (1050)
Q Consensus 274 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~ 353 (1050)
T Consensus 163 -------------------------------------------------------------------------------- 162 (486)
T KOG0550|consen 163 -------------------------------------------------------------------------------- 162 (486)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 001578 354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA 433 (1050)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 433 (1050)
...|.-..+.+..+.++...|++++|+..--.++++++.+.++++..|.+++..++.+.
T Consensus 163 ---------------------s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~k 221 (486)
T KOG0550|consen 163 ---------------------SREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADK 221 (486)
T ss_pred ---------------------cCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHH
Confidence 00011234455678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcC
Q 001578 434 AISDFTEAIQSNPSAGE------------AWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFK 497 (1050)
Q Consensus 434 A~~~~~~al~~~p~~~~------------~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~----~~~~~~lg~~~~~~g 497 (1050)
|+..|++++.++|++.. .+...|.-.++.|++..|.++|..+|.++|++ +.+|.+++.+..++|
T Consensus 222 a~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg 301 (486)
T KOG0550|consen 222 AINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG 301 (486)
T ss_pred HHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC
Confidence 99999999999998743 46667888889999999999999999999965 567889999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001578 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (1050)
Q Consensus 498 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 577 (1050)
+..+|+...+.++.+++....++...|.++..++++++|.+.|+++++...+ ......+..+ ...++++
T Consensus 302 rl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A----------~~aLkkS 370 (486)
T KOG0550|consen 302 RLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREA----------QLALKKS 370 (486)
T ss_pred CchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHH----------HHHHHHh
Confidence 9999999999999999999999999999999999999999999999988665 3333322222 1112211
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-------HH-HHHHHHHHHHHccCHHHHHHHHHHH
Q 001578 578 LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-------IE-CLYLRASCYHAIGEYREAIKDYDAA 645 (1050)
Q Consensus 578 l~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~-------~~-~~~~la~~~~~~g~~~eA~~~~~~a 645 (1050)
-. ..-|..+|....... .+--..+-..+|...|+- .+ -....|..|..++++.++.+++.-.
T Consensus 371 kR-----kd~ykilGi~~~as~-~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 371 KR-----KDWYKILGISRNASD-DEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred hh-----hhHHHHhhhhhhccc-chhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 11 111222333222211 111111222234334432 12 3456889999999999988876544
No 48
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.1e-17 Score=172.78 Aligned_cols=304 Identities=17% Similarity=0.101 Sum_probs=275.0
Q ss_pred HHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001578 386 SRGIAQVNEGK--YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (1050)
Q Consensus 386 ~~a~~~~~~g~--~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (1050)
..+.+....++ +.-+..++-......|++...+..+|.+++..|++++|+..|+++.-++|......-..|.++...|
T Consensus 201 ika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg 280 (564)
T KOG1174|consen 201 IKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG 280 (564)
T ss_pred HHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc
Confidence 33444444444 4555556666667789999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (1050)
Q Consensus 464 ~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 543 (1050)
+++.-..+....+........-|+.-+..++..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.|
T Consensus 281 ~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 281 GCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred CHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 99999999999999888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-HCCCHHHHHHHHHHHHhcCCCCHHH
Q 001578 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG-LLLH-GLGQHKKAIKDLSSGLGIDPSNIEC 621 (1050)
Q Consensus 544 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la-~~~~-~~g~~~eAi~~l~~al~~~p~~~~~ 621 (1050)
..+.|...+.|..+..+|...|++.+|....+.++...|.++.++..+| .++. .-.--++|...+++++.+.|....+
T Consensus 361 q~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 361 QMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred HhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHH
Confidence 9999999999999999999999999999999999999999999999987 4443 3344588999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHHH
Q 001578 622 LYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYW 697 (1050)
Q Consensus 622 ~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w 697 (1050)
-..+|.++...|.+++++..+++++...||. ..+..+|..+.....+.+|+.+|.+++.+||..+...
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--------~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--------NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhhcccc--------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 9999999999999999999999999999987 3456678888888999999999999999999998663
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.79 E-value=4.4e-16 Score=180.41 Aligned_cols=297 Identities=12% Similarity=0.033 Sum_probs=242.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-HHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-GTARAFQRELEAAISDFTEAIQSNPSAGEA-WKRRGQA 458 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~ 458 (1050)
....+..|...+..|+++.|.+.+.+..+..+ ++..++.+ +.+....|+++.|..++.++.+.+|+...+ ....+.+
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 45567888899999999999988887655433 34444444 666699999999999999999999988544 3455999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHc
Q 001578 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT--------YLGLALSSI 530 (1050)
Q Consensus 459 ~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~--------~la~~~~~~ 530 (1050)
+...|++++|+..++++.+..|+++.++..++.+|...|++++|++.+.+..+..+.++.... .+.......
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999888766543222 222222233
Q ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001578 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (1050)
Q Consensus 531 g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~ 610 (1050)
.+.+.....++......|+++.+...++..+...|+.++|...++++++. +.++.....++.+ ..++.++++..+++
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~ 319 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQ 319 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHH
Confidence 34445555555555566778999999999999999999999999999995 4456555555554 44999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 001578 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI 689 (1050)
Q Consensus 611 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l 689 (1050)
.++.+|+++..+..+|.++...|++++|.++|+++++..|++.. +...+.++...|+.++|..+|.+++.+
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~--------~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD--------YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998753 445777888899999999999888764
No 50
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=5.8e-17 Score=179.90 Aligned_cols=231 Identities=17% Similarity=0.157 Sum_probs=140.7
Q ss_pred CCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001578 395 GKYASAISIFDQILKEDP----MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470 (1050)
Q Consensus 395 g~~~~Ai~~~~~al~~~p----~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 470 (1050)
+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456667777777775333 2255677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 001578 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (1050)
Q Consensus 471 ~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 550 (1050)
.|+++++++|++..++.++|.++...|++++|++.++++++.+|+++..... ..+....+++++|+..+.+++...+..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 7777777777777777777777777777777777777777777776532111 122344566777777776655433221
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH-------hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHH
Q 001578 551 LEAWGHLTQFYQDLANSEKALECLQQVL-------YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP-SNIECL 622 (1050)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~l~~al-------~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p-~~~~~~ 622 (1050)
. +. .+.++...|+..++ ..++.+. ++.|...++|+++|.++..+|++++|+.+|+++++.+| +..+..
T Consensus 199 ~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 199 Q--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred c--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 1 11 23444445554332 1222222 33444555666666666666666666666666666664 444444
Q ss_pred HHHHHHHH
Q 001578 623 YLRASCYH 630 (1050)
Q Consensus 623 ~~la~~~~ 630 (1050)
+.+..+..
T Consensus 275 ~~~~e~~~ 282 (296)
T PRK11189 275 YALLELAL 282 (296)
T ss_pred HHHHHHHH
Confidence 44444433
No 51
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=7.1e-18 Score=187.90 Aligned_cols=233 Identities=19% Similarity=0.247 Sum_probs=162.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001578 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464 (1050)
Q Consensus 385 ~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 464 (1050)
+..|..+++.|+..+|.-+|+.+++.+|.++++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 56778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHH
Q 001578 465 SVEAIQDLSKALEFEPNSADILHE-------RGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKK 535 (1050)
Q Consensus 465 ~~eA~~~l~kal~~~p~~~~~~~~-------lg~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~e 535 (1050)
-.+|+.++.+-+...|........ ...-......+..-.+.|..+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 888888888887776543221110 00000111122333455555555556 566677777777777777777
Q ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 001578 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (1050)
Q Consensus 536 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~ 615 (1050)
|+.+|+.||...|++...|..||-.+..-.+.++|+..|++|+++.|....+++++|..++.+|.|++|+++|-.||.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 77777777777777777777777777666677777777777777777777777777777777777777777777776664
Q ss_pred CC
Q 001578 616 PS 617 (1050)
Q Consensus 616 p~ 617 (1050)
+.
T Consensus 529 ~k 530 (579)
T KOG1125|consen 529 RK 530 (579)
T ss_pred hc
Confidence 43
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.77 E-value=4.6e-16 Score=181.23 Aligned_cols=277 Identities=14% Similarity=0.027 Sum_probs=235.3
Q ss_pred HHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001578 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (1050)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (1050)
.+.....|.....++..|..+...|+++.|..++.++.+..|++. .+....+.++...|+++.|...++++.+..|+++
T Consensus 108 ~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~ 187 (409)
T TIGR00540 108 AKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK 187 (409)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 444556677778888999999999999999999999999999875 5667779999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHH
Q 001578 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH----ERGIVNFKFKDFNAAVEDLSACVKLDK----ENKSAYT 521 (1050)
Q Consensus 450 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~----~lg~~~~~~g~~~~A~~~l~~al~~~p----~~~~~~~ 521 (1050)
.++..++.++...|++++|.+.+.+..+....++..+. ....-+...+..+++.+.+..+....| +++..+.
T Consensus 188 ~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~ 267 (409)
T TIGR00540 188 EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKI 267 (409)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHH
Confidence 99999999999999999999999999987554443321 222222444555666778888888877 5899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH--HHHHHHHHHcCChHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHH
Q 001578 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW--GHLTQFYQDLANSEKALECLQQVLYIDKRFS--KAYHLRGLLLHG 597 (1050)
Q Consensus 522 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~--~~la~~~~~~g~~~~A~~~l~~al~~~p~~~--~~~~~la~~~~~ 597 (1050)
.++..+...|++++|+..++++++..|++.... ..........++.+.+++.++++++..|+++ ..+..+|.++.+
T Consensus 268 ~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~ 347 (409)
T TIGR00540 268 ALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK 347 (409)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 999999999999999999999999999987532 2233333446888999999999999999999 889999999999
Q ss_pred CCCHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578 598 LGQHKKAIKDLS--SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (1050)
Q Consensus 598 ~g~~~eAi~~l~--~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 648 (1050)
.|++++|.++|+ .+++..|+... +..+|.++.++|+.++|.++|++++..
T Consensus 348 ~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 348 HGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred cccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999 57778887655 669999999999999999999998765
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=3.5e-17 Score=169.15 Aligned_cols=264 Identities=14% Similarity=0.069 Sum_probs=240.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001578 390 AQVNEGKYASAISIFDQILKED---PM-------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (1050)
Q Consensus 390 ~~~~~g~~~~Ai~~~~~al~~~---p~-------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (1050)
+++..++...|-......++.+ |. +...-..+|.||+.+|-+.+|...++.+++..| .++.+..++.+|
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY 266 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY 266 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence 4556677777777776666543 21 122335799999999999999999999998775 578888999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001578 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539 (1050)
Q Consensus 460 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 539 (1050)
.+..+...|+..+.+.++..|.+...+...+.++..++++++|.++|+.+++.+|.+.++...+|.-|+.-++.+-|+.+
T Consensus 267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q 001578 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (1050)
Q Consensus 540 l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p---~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p 616 (1050)
|++.++..-.+++.+.++|.+.+..++++-++..|++++.... .-+++|+++|.+....|++.-|..+|+-++..++
T Consensus 347 YRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 347 YRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 9999999999999999999999999999999999999998754 3368999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 617 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
++.+++.++|.+-.+.|+.++|..++..|-...|+-.+
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 99999999999999999999999999999999998765
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.77 E-value=1.4e-16 Score=176.93 Aligned_cols=223 Identities=22% Similarity=0.246 Sum_probs=183.9
Q ss_pred cCCHHHHHHHHHHHHHhCC---C-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001578 428 QRELEAAISDFTEAIQSNP---S-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503 (1050)
Q Consensus 428 ~g~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~ 503 (1050)
.+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3567889999999996444 3 36789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 001578 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (1050)
Q Consensus 504 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 583 (1050)
..|+++++++|++..++.++|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.++....+.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCc
Confidence 99999999999999999999999999999999999999999999998742222 22345678999999999887755432
Q ss_pred CHHHHHHHHHHHHHCCCHHHH--HHHHHH----HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC-CCHH
Q 001578 584 FSKAYHLRGLLLHGLGQHKKA--IKDLSS----GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL-DSME 654 (1050)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~eA--i~~l~~----al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p-~~~~ 654 (1050)
.. +. .+.++...|+..++ +..+.+ ..++.|...++|+++|.++..+|++++|+.+|+++++++| +..+
T Consensus 198 ~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 198 EQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred cc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 22 22 35555666766443 333332 2355666778999999999999999999999999999997 4444
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.77 E-value=2.9e-15 Score=171.74 Aligned_cols=292 Identities=20% Similarity=0.189 Sum_probs=251.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001578 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALGESVEAIQDLSK 474 (1050)
Q Consensus 396 ~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~k 474 (1050)
...+++..++++++.+|+|+.+.+.++.-|..+++.+.|.....++++.+ .+++.+|..+|.++...+++.+|+...+.
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999994 56789999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---------HHHHHHHHcCCHHHHHHHHHHHHH
Q 001578 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT---------YLGLALSSIGEYKKAEEAHLKAIQ 545 (1050)
Q Consensus 475 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~---------~la~~~~~~g~~~eA~~~l~~al~ 545 (1050)
++...|+|.........+-...++.++|+..+...+.+-.....+-. ..+......++..+|+..+.++..
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 99999998888888888888899999999999888877543322222 222233334455556655555443
Q ss_pred hC-------------c--------Cc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 001578 546 LD-------------R--------NF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (1050)
Q Consensus 546 ~~-------------p--------~~-----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 599 (1050)
.- | +. ...|...+..+...+..++|..++.++-.++|..+..|+..|.++...|
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH
Confidence 21 1 11 3567788899999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHH
Q 001578 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK--DYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKIN 677 (1050)
Q Consensus 600 ~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~--~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 677 (1050)
+..+|.+.|..|+.++|+++.....+|.++.+.|+..-|.. .+..+++++|.+++ +||..|..+...|+..
T Consensus 699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e-------aW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE-------AWYYLGEVFKKLGDSK 771 (799)
T ss_pred hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHccchH
Confidence 99999999999999999999999999999999999888888 99999999999997 6777888888999999
Q ss_pred HHHHHHHHhhccCCCCH
Q 001578 678 SEFCWFDIDGDIDPLFK 694 (1050)
Q Consensus 678 ~A~~~l~~a~~l~p~~~ 694 (1050)
.|..+|.-+.++++..+
T Consensus 772 ~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 772 QAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHhhccCCC
Confidence 99999999999887755
No 56
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=1.5e-17 Score=185.21 Aligned_cols=233 Identities=18% Similarity=0.249 Sum_probs=208.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 001578 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498 (1050)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~ 498 (1050)
+..|..+++.|++.+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHcCChHH
Q 001578 499 FNAAVEDLSACVKLDKENKSAYTY-------LGLALSSIGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEK 569 (1050)
Q Consensus 499 ~~~A~~~l~~al~~~p~~~~~~~~-------la~~~~~~g~~~eA~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~~ 569 (1050)
-.+|+.++.+-+...|........ ...-......+..-.+.|..+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999887754321110 00001111223445667777777788 789999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (1050)
Q Consensus 570 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 649 (1050)
|+++|+.||...|++...|..||-.+..-.+..+|+..|++|+++.|....++|++|.++..+|.|++|.++|-.||.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 001578 650 LD 651 (1050)
Q Consensus 650 p~ 651 (1050)
+.
T Consensus 529 ~k 530 (579)
T KOG1125|consen 529 RK 530 (579)
T ss_pred hc
Confidence 76
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.76 E-value=3.7e-16 Score=166.78 Aligned_cols=201 Identities=18% Similarity=0.139 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001578 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (1050)
Q Consensus 449 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 528 (1050)
...+..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 34555555555555566666666665555555555555666666666666666666666666666666566666666666
Q ss_pred HcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 001578 529 SIGEYKKAEEAHLKAIQLD--RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606 (1050)
Q Consensus 529 ~~g~~~eA~~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~ 606 (1050)
..|++++|+..+.+++... +.....+..+|.++...|++++|...+++++..+|.+..++..+|.++...|++++|+.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665532 33455666677777777777777777777777777766777777777777777777777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (1050)
Q Consensus 607 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 649 (1050)
.+++++...|.++..+..++.++...|+.++|..+.+.+....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 7777777666666677777777777777777777666665543
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=4.6e-17 Score=173.84 Aligned_cols=271 Identities=25% Similarity=0.307 Sum_probs=243.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (1050)
+......|..++...+|.+|+..+..+++..|+++..|...+.+++..|++++|....++.+++.|.....+...++++.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 44456678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHH------------hhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001578 461 ALGESVEAIQDLSKAL------------EFE------PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522 (1050)
Q Consensus 461 ~~g~~~eA~~~l~kal------------~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 522 (1050)
.+++..+|.+.++..- .+. |.-..+....+.++...|++++|...--..+++++.+.++++.
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~v 208 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYV 208 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHh
Confidence 9998888876665221 011 1123455667899999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcH------------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HH
Q 001578 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFL------------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SK 586 (1050)
Q Consensus 523 la~~~~~~g~~~eA~~~l~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~ 586 (1050)
.|.+++..++.+.|+..|++++.++|++. ..+..-|.-.++.|++..|.++|..+|.++|++ +.
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 99999999999999999999999999873 445677888999999999999999999999975 56
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (1050)
Q Consensus 587 ~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 651 (1050)
.|.++|.+...+|+..+|+...+.++.++|....++...|.|+..++++++|++.|++++++..+
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 78999999999999999999999999999999999999999999999999999999999999876
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.75 E-value=5.4e-16 Score=165.49 Aligned_cols=201 Identities=21% Similarity=0.241 Sum_probs=144.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001578 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (1050)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (1050)
.+..++.+|..++..|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 36677777888888888888888888888878887777788888888888888888888888887777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001578 460 AALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (1050)
Q Consensus 460 ~~~g~~~eA~~~l~kal~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 537 (1050)
...|++++|+..+++++... +.....+..+|.++...|++++|...+.+++..+|.+..++..+|.++...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777777643 3345566666777777777777777777777766666666666666666666666666
Q ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 001578 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (1050)
Q Consensus 538 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 580 (1050)
..+++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666666666666666666666666666666666665555443
No 60
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.75 E-value=1.1e-13 Score=174.95 Aligned_cols=269 Identities=14% Similarity=0.021 Sum_probs=160.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHH
Q 001578 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWKR 454 (1050)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~ 454 (1050)
+...+..+...|.+.|++++|+.+|+...+.. .-+...|..+...+.+.|++++|...|.++... .| +...|..
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyna 584 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGA 584 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHH
Confidence 45556666666666666666666666665432 123455666666666666666666666666542 22 2345556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Q 001578 455 RGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGE 532 (1050)
Q Consensus 455 la~~~~~~g~~~eA~~~l~kal~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~ 532 (1050)
+...|.+.|++++|.++|+++.+.+ +.+...|..+...|.+.|++++|+..|.+..+.. .-+...+..+...+...|+
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 6666666666666666666666654 2345566666666666666666666666666542 1124556666666666666
Q ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001578 533 YKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (1050)
Q Consensus 533 ~~eA~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eAi~~l~~ 610 (1050)
+++|.+++.++.+.. +.+...+..+...|.+.|++++|..+|++..... ..+...|..+...|.+.|++++|++.|++
T Consensus 665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666666543 2345566666666666666666666666654321 12345566666666666666666666666
Q ss_pred HHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578 611 GLGID-PSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (1050)
Q Consensus 611 al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 649 (1050)
..... ..+...+..+...+.+.|++++|.+++.++++..
T Consensus 745 M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 745 MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 55431 1234455555566666666666666666666543
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.75 E-value=4.7e-16 Score=155.28 Aligned_cols=201 Identities=20% Similarity=0.187 Sum_probs=89.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 001578 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497 (1050)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g 497 (1050)
...+|.-|+..|++..|...+++|++.+|++..+|..+|.+|...|+.+.|.+.|++++.++|++.+++++.|..++.+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 001578 498 DFNAAVEDLSACVKL--DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575 (1050)
Q Consensus 498 ~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 575 (1050)
++++|...|++++.. .+..+..+.++|.|..+.|+++.|..+|+++++++|+.+.....++..++..|+|..|..+++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 444444444444432 122233444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 001578 576 QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (1050)
Q Consensus 576 ~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~ 618 (1050)
+.....+-..+.+.....+....|+-+.|-.+=.+.....|..
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 4444433334444444444444444444444444444444443
No 62
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.74 E-value=1.4e-14 Score=180.95 Aligned_cols=295 Identities=11% Similarity=-0.033 Sum_probs=248.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Q 001578 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQ 457 (1050)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 457 (1050)
.+...+..+...|.+.|++++|...|+.. .+.+...|..+...|.+.|++++|+..|++..+.. .-+...+..+..
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34566777888999999999999999876 34578899999999999999999999999987653 234568889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001578 458 ARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (1050)
Q Consensus 458 ~~~~~g~~~eA~~~l~kal~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA 536 (1050)
++...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|...|+.++|
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999875 45778899999999999999999999998754 3567899999999999999999
Q ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 001578 537 EEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (1050)
Q Consensus 537 ~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~eAi~~l~~al~ 613 (1050)
++.|++..+.. ..+...+..+...+...|+.++|..+|+...+..+ .+...|..+..+|.+.|++++|.+.+++. .
T Consensus 411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~ 489 (697)
T PLN03081 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-P 489 (697)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-C
Confidence 99999988753 22466778888899999999999999999986433 23467888999999999999999999875 2
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 001578 614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGD 688 (1050)
Q Consensus 614 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~ 688 (1050)
..| +..+|..+...+...|+++.|...+++.+++.|++... |......+...|++++|...++...+
T Consensus 490 ~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~-------y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 490 FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNN-------YVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 334 46789999999999999999999999999999988653 34455567778999999999876543
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=4.7e-15 Score=171.81 Aligned_cols=265 Identities=13% Similarity=0.014 Sum_probs=221.5
Q ss_pred HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001578 381 VDFRLS-RGIAQVNEGKYASAISIFDQILKEDPMYPEA-LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (1050)
Q Consensus 381 ~~~~~~-~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (1050)
+..++. .+......|+++.|..+|.++.+.+|+...+ ....+.++...|++++|+..++++.+.+|+++.++..++.+
T Consensus 117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~ 196 (398)
T PRK10747 117 PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQA 196 (398)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 444444 4666699999999999999999999987543 34559999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHH--------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001578 459 RAALGESVEAIQDLSKALEFEPNSADILH--------ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530 (1050)
Q Consensus 459 ~~~~g~~~eA~~~l~kal~~~p~~~~~~~--------~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 530 (1050)
|...|++++|++.+.+..+..+.++.... .+........+-+...+.++..-+..|+++.+...++..+...
T Consensus 197 ~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~ 276 (398)
T PRK10747 197 YIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIEC 276 (398)
T ss_pred HHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHC
Confidence 99999999999999999987765544222 2122222333445555555555556678999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001578 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (1050)
Q Consensus 531 g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~ 610 (1050)
|+.++|...++++++. +.++.....++.+ ..++.+++++.+++.++.+|+++..+..+|.++...+++++|..+|++
T Consensus 277 g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 277 DDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred CCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999994 5456555545544 459999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (1050)
Q Consensus 611 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 649 (1050)
+++..|++ ..+..++.++.++|+.++|..+|++++.+.
T Consensus 354 al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 354 ALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999985 456689999999999999999999998865
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.74 E-value=9.2e-16 Score=153.19 Aligned_cols=206 Identities=19% Similarity=0.108 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001578 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (1050)
Q Consensus 449 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 528 (1050)
..+...+|.-|+..|++..|...++++++.+|++..++..++.+|...|+.+.|.+.|++++.++|++.+++++.|..+.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 001578 529 SIGEYKKAEEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606 (1050)
Q Consensus 529 ~~g~~~eA~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~ 606 (1050)
.+|++++|...|++|+.. .+..+..+.++|.|..+.|+++.|..+|+++++++|+.+.....++..++..|+|-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999999974 345578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 607 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
++++.....+-..+.+.....+-...|+-+.|.++=.+.....|...+
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 999999988888999999999999999999999999999999999876
No 65
>PLN02789 farnesyltranstransferase
Probab=99.73 E-value=9.2e-16 Score=169.78 Aligned_cols=265 Identities=17% Similarity=0.142 Sum_probs=164.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001578 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDLSKALEFEPNSADILHERGIV 492 (1050)
Q Consensus 414 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~l~kal~~~p~~~~~~~~lg~~ 492 (1050)
...++-.+-.++...+.+++|+..+.++++++|.+..+|..++.++..+| ++++++..+++++..+|++..+|+.++.+
T Consensus 36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~ 115 (320)
T PLN02789 36 FREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHH
Confidence 34444444445555666777777777777777777777777777776666 45677777777777777777777777766
Q ss_pred HHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc---CCh
Q 001578 493 NFKFKDF--NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL---ANS 567 (1050)
Q Consensus 493 ~~~~g~~--~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~---g~~ 567 (1050)
+...|+. ++++.++.++++.+|.+..+|...+.++...|++++|++++.++++.+|.+..+|...+.++... |.+
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 6666653 55666666777777777777777777777777777777777777777777777777666666554 222
Q ss_pred ----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 001578 568 ----EKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639 (1050)
Q Consensus 568 ----~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 639 (1050)
++++.+..+++..+|++..+|..++.++.. +++..+|+..+.+++...|.++.++..++.+|.......
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~--- 272 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPT--- 272 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccc---
Confidence 355666666666666666666666666655 334455666666666666666666666666665321110
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHHHHhhc
Q 001578 640 KDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRL 701 (1050)
Q Consensus 640 ~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w~~r~ 701 (1050)
..++..++.... .....++|...++.....||--+.||..|.
T Consensus 273 ~~~~~~~~~~~~--------------------~~~~~~~a~~~~~~l~~~d~ir~~yw~~~~ 314 (320)
T PLN02789 273 AEFRDTVDTLAE--------------------ELSDSTLAQAVCSELEVADPMRRNYWAWRK 314 (320)
T ss_pred hhhhhhhhcccc--------------------ccccHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 001111110000 012356777777777789999999997664
No 66
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.72 E-value=2.6e-15 Score=174.95 Aligned_cols=224 Identities=17% Similarity=0.111 Sum_probs=191.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001578 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541 (1050)
Q Consensus 462 ~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 541 (1050)
..+...|+..|-+++.+++..+.++..+|.+|...-+...|..+|.+|.++++.+..+.-..+..|....++++|.....
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 34588899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHhCcCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Q 001578 542 KAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619 (1050)
Q Consensus 542 ~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~ 619 (1050)
.+-+..|.. ...|..+|..|.+.++...|+..|+.++..+|.+...|..+|.+|...|+|..|++.|.++..++|.+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 777777654 455677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 001578 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDI 685 (1050)
Q Consensus 620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~ 685 (1050)
...+-.|.+...+|+|.+|+..+...+...........-++..+.+.+..++..|-..+|...+++
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 999999999999999999999999988876555444444555555555555444444444333333
No 67
>PLN02789 farnesyltranstransferase
Probab=99.72 E-value=1.7e-15 Score=167.70 Aligned_cols=217 Identities=15% Similarity=0.145 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (1050)
.+++-..-.++...+.+++|+..+.+++..+|.+..++..++.++..+| ++++++..++++++.+|++..+|..++.++
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 3444333445667889999999999999999999999999999999998 689999999999999999999999999999
Q ss_pred HHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCH-
Q 001578 460 AALGES--VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI---GEY- 533 (1050)
Q Consensus 460 ~~~g~~--~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~---g~~- 533 (1050)
...|+. ++++.+++++++.+|++..+|..++.++...|++++|++++.++++.+|.+..+|+.++.++... |.+
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 999874 78899999999999999999999999999999999999999999999999999999999998776 333
Q ss_pred ---HHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 001578 534 ---KKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (1050)
Q Consensus 534 ---~eA~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 597 (1050)
++++.+..+++..+|++..+|..++.++.. +++..+|+..+.+++...|.++.++..++.+|..
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 578889999999999999999999999988 4567789999999999999999999999999975
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=8.3e-14 Score=145.65 Aligned_cols=304 Identities=16% Similarity=0.098 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001578 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (1050)
Q Consensus 383 ~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (1050)
-.+.+|.+.+..-.|++|++.|.+++..+|+....-..+|.||+++.-++-+.+.+.-.++..|+.+-+...++...+++
T Consensus 153 dqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 153 DQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence 34556667777778999999999999999998888889999999999999999999999999999988887777666654
Q ss_pred --CCHH----------------HHHHHHH----------HHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578 463 --GESV----------------EAIQDLS----------KALEFEP----NSADILHERGIVNFKFKDFNAAVEDLSACV 510 (1050)
Q Consensus 463 --g~~~----------------eA~~~l~----------kal~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~l~~al 510 (1050)
|+.. .+..+++ -+++.-| .-+++..++...|..+++..+|+...+.
T Consensus 233 ~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd-- 310 (557)
T KOG3785|consen 233 INGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD-- 310 (557)
T ss_pred hccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh--
Confidence 2221 1222211 1222223 1367888999999999999999988764
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCc------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 001578 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ---LDR------NFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581 (1050)
Q Consensus 511 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~---~~p------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 581 (1050)
++|..+.-+...|.+....|+--...+.++-|-+ +-. +.......+|.+++-..++++.+.+++..-...
T Consensus 311 -l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF 389 (557)
T KOG3785|consen 311 -LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF 389 (557)
T ss_pred -cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999998876555444444332 211 223345567778888889999999999888888
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 001578 582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC 660 (1050)
Q Consensus 582 p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~ 660 (1050)
.++....+++|+++...|+|.+|.+.|-+.-..+ .+.......+|.||...+..+-|...+-+. + ++.+.+.++
T Consensus 390 ~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~-t~~e~fsLL- 464 (557)
T KOG3785|consen 390 TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---N-TPSERFSLL- 464 (557)
T ss_pred cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---C-CchhHHHHH-
Confidence 8888899999999999999999999998776554 233455667999999999999999877542 2 233433222
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHHHH
Q 001578 661 LAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWC 698 (1050)
Q Consensus 661 ~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w~ 698 (1050)
-..+..+|..+.|--|-..|+....+||. +++|.
T Consensus 465 ---qlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnWe 498 (557)
T KOG3785|consen 465 ---QLIANDCYKANEFYYAAKAFDELEILDPT-PENWE 498 (557)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhhHHHccCCC-ccccC
Confidence 22455667777777777778777777877 66774
No 69
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=1.7e-14 Score=150.06 Aligned_cols=267 Identities=18% Similarity=0.161 Sum_probs=240.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHH
Q 001578 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQA 458 (1050)
Q Consensus 384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~ 458 (1050)
-|..|.-++-..+.++|+..|..+++.+|...++.+.+|..+...|..+.|+..-+..+. .|+. ..+...+|.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 355777788889999999999999999999999999999999999999999998776654 4543 3478899999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCH
Q 001578 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-----KSAYTYLGLALSSIGEY 533 (1050)
Q Consensus 459 ~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~-----~~~~~~la~~~~~~g~~ 533 (1050)
|+..|-++.|...|....+...--..++..+..+|....++++|++..++..++.+.. +..+..++..+....+.
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 9999999999999999988766667899999999999999999999999999998875 35677889999999999
Q ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001578 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (1050)
Q Consensus 534 ~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eAi~~l~~al 612 (1050)
+.|...+.+|++.+|++..+-..+|.++...|+|+.|++.++.+++.+|+. +++...+..+|.++|+.++.+..+.++.
T Consensus 197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999976 5788899999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 001578 613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (1050)
Q Consensus 613 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 652 (1050)
+..++ +++...++..-....-.+.|..++.+-+...|+-
T Consensus 277 ~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~ 315 (389)
T COG2956 277 ETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM 315 (389)
T ss_pred HccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH
Confidence 98876 5666777777777888899999999999999975
No 70
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.70 E-value=1.9e-12 Score=163.79 Aligned_cols=257 Identities=13% Similarity=0.033 Sum_probs=139.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCH
Q 001578 388 GIAQVNEGKYASAISIFDQILKEDP-MYPEALIGRGTARAFQRELEAAISDFTEAIQSNP-SAGEAWKRRGQARAALGES 465 (1050)
Q Consensus 388 a~~~~~~g~~~~Ai~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~ 465 (1050)
...|.+.|++++|.++|+++.+... .+...|..+...|.+.|++++|+..|.......- -+...|..+...|.+.|++
T Consensus 479 I~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 3344555566666666665554332 1345555555556666666666666655544321 1244555555556666666
Q ss_pred HHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001578 466 VEAIQDLSKALEF----EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAH 540 (1050)
Q Consensus 466 ~eA~~~l~kal~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l 540 (1050)
++|.+.+.++... .| +...+..+...|.+.|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|+..|
T Consensus 559 deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf 637 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6666666555432 23 34455555555666666666666666555554 234455555555566666666666666
Q ss_pred HHHHHh--CcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Q 001578 541 LKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--D 615 (1050)
Q Consensus 541 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~--~ 615 (1050)
.+..+. .|+ ...|..+...|.+.|++++|.++++.+.+.. +.+...|..+...|.+.|++++|++.|++.... .
T Consensus 638 ~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 638 DDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 555544 222 4455555555556666666666666555432 233455555556666666666666666555432 2
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 001578 616 PSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (1050)
Q Consensus 616 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 647 (1050)
| +...|..+...|.+.|++++|.+.|++...
T Consensus 717 P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 717 P-TVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 244555556666666666666666665543
No 71
>PLN03077 Protein ECB2; Provisional
Probab=99.69 E-value=2.9e-13 Score=173.21 Aligned_cols=293 Identities=11% Similarity=-0.046 Sum_probs=242.5
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001578 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (1050)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (1050)
..+...+..+...|.+.|++++|.++|++..+ .+...|..+...|...|+.++|+..|++.....+.+...+..+-.
T Consensus 421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~ 497 (857)
T PLN03077 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALS 497 (857)
T ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHH
Confidence 34566777888899999999999999998643 356678889999999999999999999998765556667777778
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001578 458 ARAALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (1050)
Q Consensus 458 ~~~~~g~~~eA~~~l~kal~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA 536 (1050)
++...|+.+.+.+.+..+++..- .+..+...+...|.+.|+.++|...|+.. +.+...|..+...|...|+.++|
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A 573 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMA 573 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHH
Confidence 88899999999999999887643 34556778889999999999999999886 56788999999999999999999
Q ss_pred HHHHHHHHHh--CcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001578 537 EEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (1050)
Q Consensus 537 ~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~eAi~~l~~al 612 (1050)
+..|++..+. .|+ ...+..+...+.+.|+.++|..+|+...+..+ .+...|..+..++.+.|++++|.+.+++.
T Consensus 574 ~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m- 651 (857)
T PLN03077 574 VELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM- 651 (857)
T ss_pred HHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-
Confidence 9999998874 354 45566666788999999999999999885432 23578999999999999999999999986
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 001578 613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (1050)
Q Consensus 613 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~ 687 (1050)
...|+ ..+|..+-..+...|+.+.|....+++++++|++...+. ..+..+...|+|++|....+...
T Consensus 652 ~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~-------ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 652 PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI-------LLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH-------HHHHHHHHCCChHHHHHHHHHHH
Confidence 35565 677878877888899999999999999999999986443 44555667799999988876553
No 72
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.69 E-value=8.6e-14 Score=173.88 Aligned_cols=265 Identities=10% Similarity=-0.045 Sum_probs=229.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Q 001578 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRG 456 (1050)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 456 (1050)
.+...|..+...|...|++++|+.+|++..+.. .-+...+..+..++...|++++|...+..+++.. +.+..++..+.
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 356778888999999999999999999997643 2346688899999999999999999999999875 55677889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Q 001578 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK-ENKSAYTYLGLALSSIGEYKK 535 (1050)
Q Consensus 457 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~e 535 (1050)
..|.+.|++++|...|++..+ .+...|..+...|.+.|+.++|++.|++..+... -+...+..+...+...|..++
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~ 444 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH
Confidence 999999999999999998754 3667899999999999999999999999887542 246678888889999999999
Q ss_pred HHHHHHHHHHhCc--CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 001578 536 AEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (1050)
Q Consensus 536 A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~ 613 (1050)
|..+|+...+..+ .+...|..+..+|.+.|++++|.+.+++. ...| +...|..+...+...|+++.|...+++.+.
T Consensus 445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 9999999986432 23567888999999999999999998864 2233 467799999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578 614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (1050)
Q Consensus 614 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 648 (1050)
+.|++...|..++.+|...|++++|.+.++...+.
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999988765
No 73
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.68 E-value=2e-14 Score=167.72 Aligned_cols=294 Identities=14% Similarity=0.125 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001578 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (1050)
Q Consensus 383 ~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (1050)
.+..+|..+.+.+++..|+..|+.++..+|.+..+|..+|.+|...|.+..|++.|.++..++|.+..+.+..+.+....
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 35558889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------C-CCCHHHHHHHHHHH
Q 001578 463 GESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSACVKL-------D-KENKSAYTYLGLAL 527 (1050)
Q Consensus 463 g~~~eA~~~l~kal~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~l~~al~~-------~-p~~~~~~~~la~~~ 527 (1050)
|+|.+|+..+...+...... ++.+...+..+...|-+.+|..+++++++. . -++...|..+|.++
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac 723 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC 723 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Confidence 99999999999888765433 445555555555566666666666665543 2 22333333333222
Q ss_pred HH-----------------------cCCH------HHHHHHHHHHHHhCcCcHHHHHHHHHHHHH--------cCChHHH
Q 001578 528 SS-----------------------IGEY------KKAEEAHLKAIQLDRNFLEAWGHLTQFYQD--------LANSEKA 570 (1050)
Q Consensus 528 ~~-----------------------~g~~------~eA~~~l~~al~~~p~~~~~~~~la~~~~~--------~g~~~~A 570 (1050)
.- .+.. --|.+++-..+.+.. ++..|+++|..|.+ ..+...|
T Consensus 724 ~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f~~l~et~~~~~~A 802 (1238)
T KOG1127|consen 724 YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYFLLLGETMKDACTA 802 (1238)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence 11 1111 123344444443322 26678899888776 2344589
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC
Q 001578 571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (1050)
Q Consensus 571 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 650 (1050)
+.++.+++++..++...|..+|.+ ...|++.-|..+|-+.+...|.....|.++|.++.+..+++-|...|.++..++|
T Consensus 803 i~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP 881 (1238)
T KOG1127|consen 803 IRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP 881 (1238)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCc
Confidence 999999999999999999999998 6669999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 001578 651 DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDI 685 (1050)
Q Consensus 651 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~ 685 (1050)
.+.. .|...+.+....|+.-+++..|.-
T Consensus 882 ~nl~-------~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 882 LNLV-------QWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhH-------HHHHHHHhHHHHHHHHHHHHHHHh
Confidence 9975 445555555666766667666655
No 74
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=3.4e-16 Score=162.67 Aligned_cols=107 Identities=29% Similarity=0.409 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHH
Q 001578 31 SVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK 109 (1050)
Q Consensus 31 ~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~ 109 (1050)
+....+.+.|.+||++++.++|++|+..|++||+++ .|+++|+|||.+|.++|.++.|+++|+.||.+||.+.++|.|+
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 456678899999999999999999999999999999 7888899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 001578 110 GCAFSALGRKEEALSVWEKGYEHALHQS 137 (1050)
Q Consensus 110 g~~~~~lg~~~~A~~~~~~al~~~~~~~ 137 (1050)
|.+|+.+|++++|++.|++||++.|+..
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 9999999999999999999977777765
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.68 E-value=8.7e-15 Score=168.50 Aligned_cols=251 Identities=18% Similarity=0.185 Sum_probs=168.2
Q ss_pred HhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 001578 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451 (1050)
Q Consensus 372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 451 (1050)
......|.-......+|..|..+|+|+.|+..++.+++.-- ...| ...|.-...
T Consensus 190 ~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~-------------k~~G-------------~~hl~va~~ 243 (508)
T KOG1840|consen 190 GLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILE-------------KTSG-------------LKHLVVASM 243 (508)
T ss_pred hcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-------------HccC-------------ccCHHHHHH
Confidence 33445555555666666666666666666666666665500 0000 002222223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC
Q 001578 452 WKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--------KE 515 (1050)
Q Consensus 452 ~~~la~~~~~~g~~~eA~~~l~kal~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~--------p~ 515 (1050)
...+|.+|..++++.+|+..|++++.+ +|.-+.++.+||.+|...|++++|..++++++++. |.
T Consensus 244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~ 323 (508)
T KOG1840|consen 244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE 323 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH
Confidence 334555555566666666666655554 12224456666666666666666666666666542 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------
Q 001578 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID------ 581 (1050)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~------ 581 (1050)
-...+.+++.++...+++++|+.++++++++. +.-+..+.++|.+|..+|++++|.++|++++.+.
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC
Confidence 34566777788888888888888888877763 2336778889999999999999999999998764
Q ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578 582 --KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (1050)
Q Consensus 582 --p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~-------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 648 (1050)
+.....+..+|..+.+.+++.+|...|.++..+ .|+....+.+||.+|..+|++++|+++.++++..
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 223457888999999999999999998888765 3455678899999999999999999999998854
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.66 E-value=3.8e-14 Score=163.28 Aligned_cols=230 Identities=20% Similarity=0.185 Sum_probs=164.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHH
Q 001578 384 RLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------NPSAGEAWKR 454 (1050)
Q Consensus 384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~-~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~ 454 (1050)
+...|..--..--+..|++.+.+..-. .|.-......+|.+|..++++.+|+..|++|+.+ +|....++.+
T Consensus 209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~n 288 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNN 288 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 333333333333344455554333322 1222233345788888888888888888888765 3334567788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CCHH
Q 001578 455 RGQARAALGESVEAIQDLSKALEFEP--------NSADILHERGIVNFKFKDFNAAVEDLSACVKLD-----K---ENKS 518 (1050)
Q Consensus 455 la~~~~~~g~~~eA~~~l~kal~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~-----p---~~~~ 518 (1050)
||.+|...|++++|..++++++++.. .-+..+.+++.++...+++++|+.++++++++. + .-+.
T Consensus 289 La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~ 368 (508)
T KOG1840|consen 289 LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK 368 (508)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence 88888888888888888888877632 224467778888888888888888888888763 2 2346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------CCC
Q 001578 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDR--------NFLEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKR 583 (1050)
Q Consensus 519 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-------~p~ 583 (1050)
.+.++|.+|...|++++|.++|++|+.+.. .....+.++|..|.+.+++.+|...|.+++.+ .|+
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 778899999999999999999999988742 23567788888899999999898888888765 234
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 001578 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (1050)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~eAi~~l~~al~ 613 (1050)
....+.+||.+|..+|++++|+++.++++.
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 456788999999999999999999888874
No 77
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=1.3e-13 Score=143.62 Aligned_cols=268 Identities=19% Similarity=0.204 Sum_probs=227.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHH
Q 001578 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVN 493 (1050)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-----~~~~~~lg~~~ 493 (1050)
+..|.-+.-..+.++|++.|...++.+|...++...+|.+|...|..+.|+..-+..+. .|+. ..+...+|.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 45666677788999999999999999999999999999999999999999998877665 4543 34788999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHHcCChH
Q 001578 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-----LEAWGHLTQFYQDLANSE 568 (1050)
Q Consensus 494 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-----~~~~~~la~~~~~~g~~~ 568 (1050)
...|-++.|...|........--..++..|..+|....++++|+..-++..++.++. +..+..++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999887666667899999999999999999999999999998865 567889999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 001578 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYDAALD 647 (1050)
Q Consensus 569 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~ 647 (1050)
.|...+.++++.+|.+..+-..+|.++...|+|+.|++.++.+++.+|+. +++...|..||.++|+.++....+.++.+
T Consensus 198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 67889999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHH
Q 001578 648 LELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKE 695 (1050)
Q Consensus 648 l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e 695 (1050)
..++..-.. +.++. .....-.+.|...+..-+...|.-.-
T Consensus 278 ~~~g~~~~l-----~l~~l---ie~~~G~~~Aq~~l~~Ql~r~Pt~~g 317 (389)
T COG2956 278 TNTGADAEL-----MLADL---IELQEGIDAAQAYLTRQLRRKPTMRG 317 (389)
T ss_pred ccCCccHHH-----HHHHH---HHHhhChHHHHHHHHHHHhhCCcHHH
Confidence 988754321 11111 11223345555555555555665443
No 78
>PLN03077 Protein ECB2; Provisional
Probab=99.65 E-value=1.8e-12 Score=165.97 Aligned_cols=87 Identities=11% Similarity=-0.036 Sum_probs=72.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCH
Q 001578 42 ELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQL--DPTLLQAYILKGCAFSALGRK 119 (1050)
Q Consensus 42 ~~~~~~~~~~~~~Ai~~y~~ai~~~~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l--~P~~~~a~~~~g~~~~~lg~~ 119 (1050)
-+..+.+.|++++|...|++... ++...|..+-..|.+.|++++|+..+.+.... .|+ .-.|..+-.++...|+.
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd-~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD-LMTITSVISACELLGDE 304 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCh
Confidence 45667899999999999998643 56677888888999999999999999998875 465 45777777888999999
Q ss_pred HHHHHHHHHHHh
Q 001578 120 EEALSVWEKGYE 131 (1050)
Q Consensus 120 ~~A~~~~~~al~ 131 (1050)
+.|.+.+..+.+
T Consensus 305 ~~a~~l~~~~~~ 316 (857)
T PLN03077 305 RLGREMHGYVVK 316 (857)
T ss_pred HHHHHHHHHHHH
Confidence 999999988843
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.64 E-value=3e-12 Score=144.65 Aligned_cols=437 Identities=14% Similarity=0.099 Sum_probs=315.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 001578 41 IELAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (1050)
Q Consensus 41 ~~~~~~~~~~~~~~Ai~~y~~ai~~~~-~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~ 119 (1050)
.+.-+.|..++|.+.++..+..++..| ....+.-.|..+..+|+-++|...+..++..|+...--+..+|.++....+|
T Consensus 12 ~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y 91 (700)
T KOG1156|consen 12 RRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY 91 (700)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH
Confidence 355678899999999999999999774 4455888999999999999999999999999999888999999999999999
Q ss_pred HHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCCcccc
Q 001578 120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD 199 (1050)
Q Consensus 120 ~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 199 (1050)
++|++.|+.|+.+.|++...+..+..+.......
T Consensus 92 ~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~---------------------------------------------- 125 (700)
T KOG1156|consen 92 DEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY---------------------------------------------- 125 (700)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 9999999999777766654443332222221100
Q ss_pred ccccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccccCCCC
Q 001578 200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD 279 (1050)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~ 279 (1050)
T Consensus 126 -------------------------------------------------------------------------------- 125 (700)
T KOG1156|consen 126 -------------------------------------------------------------------------------- 125 (700)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHHHHhh
Q 001578 280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS 359 (1050)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~ 359 (1050)
..
T Consensus 126 ----------------------------------------------------------------------------~~-- 127 (700)
T KOG1156|consen 126 ----------------------------------------------------------------------------EG-- 127 (700)
T ss_pred ----------------------------------------------------------------------------hh--
Confidence 00
Q ss_pred hHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHcCCH
Q 001578 360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKED---PMY-----PEALIGRGTARAFQREL 431 (1050)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~---p~~-----~~a~~~la~~~~~~g~~ 431 (1050)
....-.......|..-..|+..|..+...|++..|..+.+...+.. |.. ..+...........|.+
T Consensus 128 ------~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~ 201 (700)
T KOG1156|consen 128 ------YLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL 201 (700)
T ss_pred ------HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence 0001122355677788899999999999999999999998887654 322 34566777788888998
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 001578 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV-EDLSACV 510 (1050)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~l~~al 510 (1050)
++|++.+..--..--+........|.++..++++++|...|...+..+|++...+..+-.++..-.+--+++ ..|...-
T Consensus 202 q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 202 QKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 888888776544433445566778999999999999999999999999999988888888776334444455 5555555
Q ss_pred HhCCCCHHHHHHHHH--------------HH---HHc-------------CCHHHHHHHHHHHH-------HhC------
Q 001578 511 KLDKENKSAYTYLGL--------------AL---SSI-------------GEYKKAEEAHLKAI-------QLD------ 547 (1050)
Q Consensus 511 ~~~p~~~~~~~~la~--------------~~---~~~-------------g~~~eA~~~l~~al-------~~~------ 547 (1050)
+..|.... ...++. ++ ... .+.... ..+++.+ .-.
T Consensus 282 ~~y~r~e~-p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 282 EKYPRHEC-PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred hcCccccc-chhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcc
Confidence 54443210 000000 00 001 111111 1222222 111
Q ss_pred ------cCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Q 001578 548 ------RNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619 (1050)
Q Consensus 548 ------p~~--~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~ 619 (1050)
|.. ...++.++.-+...|+++.|..+++.|+...|...+.+...|.++...|.+++|...+.++-+++-.+.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 212 244567888899999999999999999999999999999999999999999999999999999987766
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHHHHHHhcCHHHHHHHHHHhhcc
Q 001578 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ--KEIALYTASKINSEFCWFDIDGDI 689 (1050)
Q Consensus 620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~--~g~~~~~~~~~~~A~~~l~~a~~l 689 (1050)
..-..-|....+.++.++|.+...+.-+..-+-.......--.||. -|.++++++++.+|+.-|.....+
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 6655788889999999999998877766543211111111122333 478888999999998877554433
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.64 E-value=5.8e-13 Score=152.94 Aligned_cols=312 Identities=12% Similarity=-0.024 Sum_probs=235.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001578 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453 (1050)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 453 (1050)
+|+.+..+..+|..+...|+.+.|...+.++....|.+ .+..+..|.++...|++++|...++++++.+|.+..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68889999999999999999999999999998877754 566788899999999999999999999999999988776
Q ss_pred HHHHHHHHcCCHH----HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001578 454 RRGQARAALGESV----EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (1050)
Q Consensus 454 ~la~~~~~~g~~~----eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 529 (1050)
. +..+...|++. .+...+.......|.....+..+|.++...|++++|+..+++++++.|++..++..+|.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 5 55555555444 444444443355667777888999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCcCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHH---HHHHHHHHCCC
Q 001578 530 IGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDKR--FSKAYH---LRGLLLHGLGQ 600 (1050)
Q Consensus 530 ~g~~~eA~~~l~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~---~la~~~~~~g~ 600 (1050)
.|++++|+.++++++...|..+ ..+..+|.++...|++++|+..|++++...|. ...... .+...+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999999999887432 35668999999999999999999999866652 221111 22222333443
Q ss_pred HHHHHHH--H-HHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHh
Q 001578 601 HKKAIKD--L-SSGLGIDPS--NIECLYLRASCYHAIGEYREAIKDYDAALDLELD--SMEKFVLQCLAFYQKEIALYTA 673 (1050)
Q Consensus 601 ~~eAi~~--l-~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~--~~~~~~~~~~~~~~~g~~~~~~ 673 (1050)
...+... + .......+. ........+.++...|+.++|...++......-. ...............+++++..
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3333222 1 111111121 2233346888889999999999999888765432 0111222334556678889999
Q ss_pred cCHHHHHHHHHHhhcc
Q 001578 674 SKINSEFCWFDIDGDI 689 (1050)
Q Consensus 674 ~~~~~A~~~l~~a~~l 689 (1050)
|+++.|+..+..++.+
T Consensus 321 g~~~~A~~~L~~al~~ 336 (355)
T cd05804 321 GNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999888764
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.59 E-value=1.1e-12 Score=147.93 Aligned_cols=317 Identities=19% Similarity=0.179 Sum_probs=224.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (1050)
-..++..+.-.+..++|...+...+.+++..|.+++.+...|..+..+|+-++|..+...++..++...-+|..+|.++.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 34566777777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001578 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540 (1050)
Q Consensus 461 ~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 540 (1050)
...+|++|+.+|+.|+.+.|++..++..++.+..++++++-....-.+.++..|.....|..++..+...|++..|...+
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888887777
Q ss_pred HHHHHhC---cCc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001578 541 LKAIQLD---RNF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (1050)
Q Consensus 541 ~~al~~~---p~~-----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al 612 (1050)
+...+.. |.. .........+..+.|.+++|++.+..--..--+........|.++..++++++|...|...+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 7666554 221 33444555666677777777766654332222333445566777777778888888888777
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhcCC----------------------------------------
Q 001578 613 GIDPSNIECLYLRASCYHAIGEYREAI-KDYDAALDLELD---------------------------------------- 651 (1050)
Q Consensus 613 ~~~p~~~~~~~~la~~~~~~g~~~eA~-~~~~~al~l~p~---------------------------------------- 651 (1050)
..+|++...+..+-.++..-.+--+++ ..|...-+..|.
T Consensus 247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl 326 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDL 326 (700)
T ss_pred hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhh
Confidence 777777766665555553111112222 222222111110
Q ss_pred -----C-------------------------------HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHH
Q 001578 652 -----S-------------------------------MEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKE 695 (1050)
Q Consensus 652 -----~-------------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e 695 (1050)
+ .+.-....+.+|..+..+...|.++.|..+++.|++--|...|
T Consensus 327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliE 406 (700)
T KOG1156|consen 327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIE 406 (700)
T ss_pred HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHH
Confidence 0 0011223356677777888899999999999999999999887
Q ss_pred HH
Q 001578 696 YW 697 (1050)
Q Consensus 696 ~w 697 (1050)
.+
T Consensus 407 ly 408 (700)
T KOG1156|consen 407 LY 408 (700)
T ss_pred HH
Confidence 76
No 82
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1.1e-09 Score=119.46 Aligned_cols=432 Identities=16% Similarity=0.099 Sum_probs=330.6
Q ss_pred HhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 001578 47 CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV 125 (1050)
Q Consensus 47 ~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~ 125 (1050)
..++++.+|-..|.+|+..+ .+.+++..-|.+-++.....+|-..+++|+.+=|.--+.+|..-..--.+|+...|.+.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 57789999999999999999 88888999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCCcccccccccc
Q 001578 126 WEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSR 205 (1050)
Q Consensus 126 ~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 205 (1050)
|++-++..|+.......+ ..+.-....
T Consensus 164 ferW~~w~P~eqaW~sfI-~fElRykei---------------------------------------------------- 190 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFI-KFELRYKEI---------------------------------------------------- 190 (677)
T ss_pred HHHHHcCCCcHHHHHHHH-HHHHHhhHH----------------------------------------------------
Confidence 999988777764432211 000000000
Q ss_pred ccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccccCCCCCccCCC
Q 001578 206 DVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICN 285 (1050)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~~~~~~ 285 (1050)
T Consensus 191 -------------------------------------------------------------------------------- 190 (677)
T KOG1915|consen 191 -------------------------------------------------------------------------------- 190 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHHHHhhhHHHHh
Q 001578 286 GPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRN 365 (1050)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 365 (1050)
..
T Consensus 191 ----------------------------------------------------------------------er-------- 192 (677)
T KOG1915|consen 191 ----------------------------------------------------------------------ER-------- 192 (677)
T ss_pred ----------------------------------------------------------------------HH--------
Confidence 00
Q ss_pred HHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAI 442 (1050)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~A~~~~~~al 442 (1050)
..-.+.+..-.+ ..+..++..|..-...|+..-|...|..+++.-.++. ..+...|..-..+..++.|...|.-|+
T Consensus 193 aR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl 271 (677)
T KOG1915|consen 193 ARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYAL 271 (677)
T ss_pred HHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112222223 2367788888889999999999999999998655442 234445555566778999999999999
Q ss_pred HhCCCc--HHHHHHHHHHHHHcCCHH---HHH-----HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578 443 QSNPSA--GEAWKRRGQARAALGESV---EAI-----QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (1050)
Q Consensus 443 ~~~p~~--~~~~~~la~~~~~~g~~~---eA~-----~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~ 512 (1050)
..-|.+ .+.+..+...-.+-|+.. .++ --|++.+..+|.+.+.|+.+-.+....|+.+.-.+.|++|+..
T Consensus 272 d~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 272 DHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred HhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 999987 444444444444556543 332 2477888889999999999999999999999999999999998
Q ss_pred CCCCHH-------HHHHHHHHH---HHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001578 513 DKENKS-------AYTYLGLAL---SSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVL 578 (1050)
Q Consensus 513 ~p~~~~-------~~~~la~~~---~~~g~~~eA~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al 578 (1050)
.|.... +|..+-.++ ....+.+.+.+.|+.++++-|.. +..|...|....++.+...|.+.+-.|+
T Consensus 352 vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI 431 (677)
T KOG1915|consen 352 VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI 431 (677)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 776432 222222222 35688999999999999998864 7889999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHH
Q 001578 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL 658 (1050)
Q Consensus 579 ~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~ 658 (1050)
...|.+ ..+.....+-.++++++.....|++.++..|.+-.+|...|.+-..+|+.+.|...|+-|+....-+....
T Consensus 432 G~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel-- 508 (677)
T KOG1915|consen 432 GKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPEL-- 508 (677)
T ss_pred ccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH--
Confidence 999974 45556667778899999999999999999999999999999999999999999999999987653332211
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHHH
Q 001578 659 QCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYW 697 (1050)
Q Consensus 659 ~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w 697 (1050)
+..+|..-. ...+.++.|..+|++.++..+-.+ -|
T Consensus 509 lwkaYIdFE---i~~~E~ekaR~LYerlL~rt~h~k-vW 543 (677)
T KOG1915|consen 509 LWKAYIDFE---IEEGEFEKARALYERLLDRTQHVK-VW 543 (677)
T ss_pred HHHHhhhhh---hhcchHHHHHHHHHHHHHhcccch-HH
Confidence 112222222 345889999999999998887766 55
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.53 E-value=9.9e-12 Score=142.74 Aligned_cols=274 Identities=15% Similarity=0.057 Sum_probs=206.9
Q ss_pred ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCcHH
Q 001578 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI----QSNPSAGE 450 (1050)
Q Consensus 375 ~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~ 450 (1050)
.......+..+..|..+...|++++|+..++++++.+|.+..++.. +..+...|++..+.....+++ ..+|....
T Consensus 37 ~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 115 (355)
T cd05804 37 AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWY 115 (355)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHH
Confidence 3344556778889999999999999999999999999999987775 666665555444444444444 55677778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHH
Q 001578 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLA 526 (1050)
Q Consensus 451 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~----~~~~~la~~ 526 (1050)
++..+|.++...|++++|+..+++++++.|+++.++..+|.++...|++++|+.++++++...|..+ ..+..+|.+
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999887433 346689999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCcC--cHHHHH---HHHHHHHHcCChHHHHHH--H-HHHHhhCCC--CHHHHHHHHHHHH
Q 001578 527 LSSIGEYKKAEEAHLKAIQLDRN--FLEAWG---HLTQFYQDLANSEKALEC--L-QQVLYIDKR--FSKAYHLRGLLLH 596 (1050)
Q Consensus 527 ~~~~g~~~eA~~~l~~al~~~p~--~~~~~~---~la~~~~~~g~~~~A~~~--l-~~al~~~p~--~~~~~~~la~~~~ 596 (1050)
+...|++++|+..|++++...|. ...... .+...+...|....+... + .......+. ........+.++.
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 275 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA 275 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence 99999999999999999876662 222111 222233334433333332 1 111111121 1223346788888
Q ss_pred HCCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578 597 GLGQHKKAIKDLSSGLGIDPS---------NIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (1050)
Q Consensus 597 ~~g~~~eAi~~l~~al~~~p~---------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 649 (1050)
..|+.++|...++........ ........|.++...|++++|.+.+..++.+.
T Consensus 276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999999999887654322 24567788999999999999999999999875
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.7e-10 Score=129.45 Aligned_cols=316 Identities=13% Similarity=0.005 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-AGEAWKRRGQAR 459 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 459 (1050)
...+...|.+++++|+|++|+.+|+.+++.+.++.+............. -.+ . ..+.....|. ..+.+++.|.++
T Consensus 110 ~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~v~~v~e~syel~yN~Ac~~ 185 (652)
T KOG2376|consen 110 DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQSVPEVPEDSYELLYNTACIL 185 (652)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHhccCCCcchHHHHHHHHHHH
Confidence 4455667778888888888888888887665444333322221111000 000 0 1222222232 344556666666
Q ss_pred HHcCCHHHHHHHHHHHHhhCC-------CC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------
Q 001578 460 AALGESVEAIQDLSKALEFEP-------NS--------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS------ 518 (1050)
Q Consensus 460 ~~~g~~~eA~~~l~kal~~~p-------~~--------~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~------ 518 (1050)
...|+|.+|++.+++++.+.. .+ ..+...++.++..+|+..+|...|...++.+|.+..
T Consensus 186 i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~ 265 (652)
T KOG2376|consen 186 IENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAV 265 (652)
T ss_pred HhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHh
Confidence 666666666666666633210 00 124445556666666666666666666655544321
Q ss_pred -------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Q 001578 519 -------------------------------------------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555 (1050)
Q Consensus 519 -------------------------------------------~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 555 (1050)
.+.+.+.+.+..+.-+.+.+.....-...|.......
T Consensus 266 NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~l 345 (652)
T KOG2376|consen 266 NNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPIL 345 (652)
T ss_pred cchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHH
Confidence 2233333333334433333333332222333322222
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH--------HhcCCCCHHHHHHHH
Q 001578 556 HLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSG--------LGIDPSNIECLYLRA 626 (1050)
Q Consensus 556 ~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eAi~~l~~a--------l~~~p~~~~~~~~la 626 (1050)
.......+...+.+|.+++....+.+|.. ..+...++.+...+|+++.|++.+... .+.. ..+.+-..+-
T Consensus 346 l~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv 424 (652)
T KOG2376|consen 346 LQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIV 424 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHH
Confidence 23333333346888888888888888876 667888899999999999999999833 3322 2244444555
Q ss_pred HHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHHHHhhc
Q 001578 627 SCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRL 701 (1050)
Q Consensus 627 ~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w~~r~ 701 (1050)
..+...++.+-|...+..|+.---.....-..+...+-..+......|+-.+|...++....++|+..+..+...
T Consensus 425 ~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV 499 (652)
T KOG2376|consen 425 ALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLV 499 (652)
T ss_pred HHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 566667776667777777665322211111111122333333445569999999999999999999998865543
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.52 E-value=1.3e-11 Score=144.23 Aligned_cols=305 Identities=16% Similarity=0.096 Sum_probs=229.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (1050)
.+.++..+.++...|++++|+++++.....-.+....+-.+|.++..+|++++|...|...+..+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 56788889999999999999999999988888889999999999999999999999999999999999999999988884
Q ss_pred HcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 001578 461 ALG-----ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA-AVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534 (1050)
Q Consensus 461 ~~g-----~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~-A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 534 (1050)
... +.+.-...|++.....|....+. .+...+..-..+.. +..++...+.. .-+.....+-.+|....+..
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHH
Confidence 333 56777888888888888543322 12222222123333 33444444433 34555555555555333332
Q ss_pred HHHHHHHHHHHh---------------CcCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 001578 535 KAEEAHLKAIQL---------------DRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (1050)
Q Consensus 535 eA~~~l~~al~~---------------~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 597 (1050)
-....+...... .|.. ..+++.+|..|...|++++|+.+++++++..|..++.|...|.++..
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 222222222211 1111 34668899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH-HHHHHH-HHHHHHHHHHHhcC
Q 001578 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK-FVLQCL-AFYQKEIALYTASK 675 (1050)
Q Consensus 598 ~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~-~~~~~~-~~~~~g~~~~~~~~ 675 (1050)
.|++.+|...++.|-.+++.+-.+-...+..+.+.|+.++|.+.+......+-+.... .-.++. ....-|.++++.|+
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998888889999999999999999988876655322111 222222 23345888999999
Q ss_pred HHHHHHHHHHhhc
Q 001578 676 INSEFCWFDIDGD 688 (1050)
Q Consensus 676 ~~~A~~~l~~a~~ 688 (1050)
+..|+..|.....
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876654
No 86
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=2.6e-13 Score=131.72 Aligned_cols=122 Identities=21% Similarity=0.236 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCc------HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChh
Q 001578 31 SVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEI------QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104 (1050)
Q Consensus 31 ~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~~~------~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~ 104 (1050)
.-...+.+.+.+||++|..|+|++|..-|+.||+..|.. .+|.|||.|+++++.++.||.+|.+||+++|+|.+
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k 169 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK 169 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence 335567888899999999999999999999999998543 45999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHH
Q 001578 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152 (1050)
Q Consensus 105 a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~ 152 (1050)
|+.|++.+|..+.+|++|+.+|++.+++.|......+.+.++.|....
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e 217 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINE 217 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence 999999999999999999999999999999999888888888886554
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2.7e-10 Score=127.75 Aligned_cols=279 Identities=15% Similarity=0.080 Sum_probs=186.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPM-------YPEALIGRGTARAFQRELEAAISDFTEAIQ 443 (1050)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~--------~p~-------~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 443 (1050)
.+.+.+|+.|..+...|+|.+|++.++.++.+ +.+ -..+...++.++..+|+.++|...|...+.
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 46788999999999999999999999999542 111 124567899999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcC---C-HH-HHHHHHHHHHhhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001578 444 SNPSAGEAWKRRGQARAALG---E-SV-EAIQDLSKALEFEP----------NSADILHERGIVNFKFKDFNAAVEDLSA 508 (1050)
Q Consensus 444 ~~p~~~~~~~~la~~~~~~g---~-~~-eA~~~l~kal~~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~l~~ 508 (1050)
.+|.+.........-+.... + ++ .++..++......+ .-..++.+.+.+.+..+.-+.+.+....
T Consensus 253 ~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~ 332 (652)
T KOG2376|consen 253 RNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS 332 (652)
T ss_pred hcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 99877544332222222111 1 11 11222222111111 1133566777777777777766666555
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHcCChHHHHHHHHHHH--------h
Q 001578 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVL--------Y 579 (1050)
Q Consensus 509 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~al--------~ 579 (1050)
.-...|..............+...+.+|+.++....+.+|.. ..+.+.++.+.+.+|+++.|++.+...+ +
T Consensus 333 lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~ 412 (652)
T KOG2376|consen 333 LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE 412 (652)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence 444444433322333333333347889999999999999987 6778888999999999999999998433 2
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 001578 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (1050)
Q Consensus 580 ~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~-------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 652 (1050)
. ...+.+-..+-.+++..++.+.|...+.+|+.- .+.....+...+..-.+.|+-++|...+++.++.+|++
T Consensus 413 ~-~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 413 A-KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred h-ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence 2 123444444555566666666666666666543 33333456667778888899999999999999999999
Q ss_pred HHHHHH
Q 001578 653 MEKFVL 658 (1050)
Q Consensus 653 ~~~~~~ 658 (1050)
.+....
T Consensus 492 ~~~l~~ 497 (652)
T KOG2376|consen 492 TDLLVQ 497 (652)
T ss_pred HHHHHH
Confidence 886543
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.50 E-value=2.2e-12 Score=138.84 Aligned_cols=190 Identities=16% Similarity=0.162 Sum_probs=157.8
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--
Q 001578 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE-- 450 (1050)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 450 (1050)
..+..++.++.+|..++..|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4466788999999999999999999999999999999876 67899999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001578 451 -AWKRRGQARAAL--------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (1050)
Q Consensus 451 -~~~~la~~~~~~--------g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 521 (1050)
+++.+|.++... |++++|+..+++++..+|++......+..+....+ . ......
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~ 170 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKEL 170 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHH
Confidence 788999999876 78999999999999999988665433322211110 0 012335
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 001578 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (1050)
Q Consensus 522 ~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 582 (1050)
.+|.++...|++.+|+..+++++...|+. +.+++.+|.++...|++++|..+++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 78888999999999999999999997754 68999999999999999999998888776655
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.50 E-value=2e-12 Score=139.24 Aligned_cols=190 Identities=16% Similarity=0.061 Sum_probs=155.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---
Q 001578 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS--- 518 (1050)
Q Consensus 445 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~--- 518 (1050)
++..+..++.+|..+...|++++|+..+++++...|.++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 455678899999999999999999999999999999775 57899999999999999999999999999998765
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 001578 519 AYTYLGLALSSI--------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590 (1050)
Q Consensus 519 ~~~~la~~~~~~--------g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 590 (1050)
+++.+|.++... |++++|+..+++++..+|++..++..+..+.... .. .......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~-------------~~~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR-------------LAGKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH-------------HHHHHHH
Confidence 688899999876 7889999999999999998865543332221110 00 0123457
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (1050)
Q Consensus 591 la~~~~~~g~~~eAi~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 651 (1050)
+|.++...|++.+|+..|++++...|+. +++++.+|.++..+|++++|..+++......|+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8889999999999999999999997764 589999999999999999999998888776653
No 90
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.49 E-value=4e-13 Score=143.07 Aligned_cols=265 Identities=19% Similarity=0.192 Sum_probs=212.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHH
Q 001578 385 LSRGIAQVNEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQSN------PSAGEAWKR 454 (1050)
Q Consensus 385 ~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~ 454 (1050)
-.-|.-+++.|++...+.+|+.+++...++ ..+|..+|.+|+.+++|++|+++-..-+.+. -..+...-+
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 345788999999999999999999988776 3567889999999999999999865544321 123445678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q 001578 455 RGQARAALGESVEAIQDLSKALEFEPN------SADILHERGIVNFKFKD--------------------FNAAVEDLSA 508 (1050)
Q Consensus 455 la~~~~~~g~~~eA~~~l~kal~~~p~------~~~~~~~lg~~~~~~g~--------------------~~~A~~~l~~ 508 (1050)
+|.++..+|.|++|+.+..+-+.+... ...+++++|.+|...|+ ++.|.++|..
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 999999999999999999888776432 36689999999998765 3445566665
Q ss_pred HHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 001578 509 CVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQ 576 (1050)
Q Consensus 509 al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~ 576 (1050)
-+++.... ..++-+||..|+.+|+|+.|+...+.-+.+.... ..++.++|.++.-+|+++.|+++|++
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 55553322 2467788999999999999999988888776544 46889999999999999999999999
Q ss_pred HHhhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 001578 577 VLYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAIKDYDA 644 (1050)
Q Consensus 577 al~~~p------~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~ 644 (1050)
.+.+.- -.+...+.+|..|.-..++++||.++.+-+.+.. ....+++.+|.++..+|..++|+.+.+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 875532 2356688999999999999999999999877643 2356899999999999999999999888
Q ss_pred HHHhc
Q 001578 645 ALDLE 649 (1050)
Q Consensus 645 al~l~ 649 (1050)
.+++.
T Consensus 341 hl~~s 345 (639)
T KOG1130|consen 341 HLRSS 345 (639)
T ss_pred HHHHH
Confidence 87754
No 91
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.47 E-value=1.6e-12 Score=127.86 Aligned_cols=122 Identities=14% Similarity=0.052 Sum_probs=93.5
Q ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q 001578 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (1050)
Q Consensus 537 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p 616 (1050)
...++++++++|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45677777777764 456677777788888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001578 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCL 661 (1050)
Q Consensus 617 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~ 661 (1050)
+++.+++++|.++..+|++++|+..|++++++.|+++..+...+.
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 888888888888888888888888888888888887765544433
No 92
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.45 E-value=3.5e-11 Score=146.31 Aligned_cols=278 Identities=14% Similarity=-0.012 Sum_probs=199.6
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001578 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (1050)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (1050)
...+..-.|.+..++..++..+...+++++|+..++.+++.+|+...+++.+|.++.+.+++..|... .++...+.+.
T Consensus 20 r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~ 97 (906)
T PRK14720 20 RADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL 97 (906)
T ss_pred hcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc
Confidence 34445667889999999999999999999999999999999999999999999999999997777665 5555544432
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001578 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (1050)
Q Consensus 450 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 529 (1050)
++ .+.+++...+...+.+..+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|..
T Consensus 98 --------------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 98 --------------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE 162 (906)
T ss_pred --------------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 33 344444444444555666777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH--------------------HH
Q 001578 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA--------------------YH 589 (1050)
Q Consensus 530 ~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~--------------------~~ 589 (1050)
. +.++|+.++.+|+.. +...++|.++.++..+.+..+|++.+. +.
T Consensus 163 ~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~ 227 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLE 227 (906)
T ss_pred h-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHH
Confidence 7 777777777777654 444556666666666666666654332 33
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Q 001578 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL-DSMEKFVLQCLAFYQKEI 668 (1050)
Q Consensus 590 ~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p-~~~~~~~~~~~~~~~~g~ 668 (1050)
-+=..|...+++++++.+++.+++.+|.+..+...++.||. +.|.. ...|+.++++.. .+.
T Consensus 228 ~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~--------------- 289 (906)
T PRK14720 228 DLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNN--------------- 289 (906)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccC---------------
Confidence 33467778888999999999999999999999999999887 44444 555666655431 010
Q ss_pred HHHHhcCHHHHHHHHHHhhccCCCCHHHHHhhc
Q 001578 669 ALYTASKINSEFCWFDIDGDIDPLFKEYWCKRL 701 (1050)
Q Consensus 669 ~~~~~~~~~~A~~~l~~a~~l~p~~~e~w~~r~ 701 (1050)
...+..|+..|++-..+++|.--+.+.|+
T Consensus 290 ----~~~~~~~i~~fek~i~f~~G~yv~H~~WG 318 (906)
T PRK14720 290 ----RKPVKDCIADFEKNIVFDTGNFVYHRTWG 318 (906)
T ss_pred ----CccHHHHHHHHHHHeeecCCCEEEEcCCC
Confidence 13567788899999999999766644443
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.44 E-value=1.8e-12 Score=127.42 Aligned_cols=125 Identities=15% Similarity=0.129 Sum_probs=77.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 001578 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (1050)
Q Consensus 504 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 583 (1050)
.+++++++++|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++..+|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4555556555543 3445666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 001578 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (1050)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~ 631 (1050)
++.+++.+|.++..+|++++|+..|++++.+.|+++..+..++.+...
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666555555443
No 94
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.43 E-value=1.2e-12 Score=139.51 Aligned_cols=268 Identities=17% Similarity=0.166 Sum_probs=211.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHH
Q 001578 420 GRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLSKALEFE------PNSADILHER 489 (1050)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~kal~~~------p~~~~~~~~l 489 (1050)
.-|.-+++.|++...+.+|+.|++...++ ..+|..+|.+|..+++|++|+++-..-+.+. -..+..--++
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 34677889999999999999999988776 4478899999999999999999765544332 1235567789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHH
Q 001578 490 GIVNFKFKDFNAAVEDLSACVKLDKE------NKSAYTYLGLALSSIGE--------------------YKKAEEAHLKA 543 (1050)
Q Consensus 490 g~~~~~~g~~~~A~~~l~~al~~~p~------~~~~~~~la~~~~~~g~--------------------~~eA~~~l~~a 543 (1050)
|..+-..|.|++|+.+..+-+.+... ...+++++|.+|...|+ ++.|.++|..-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887765432 35789999999988765 34555666665
Q ss_pred HHhCcCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001578 544 IQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (1050)
Q Consensus 544 l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eAi~~l~~a 611 (1050)
+++.... ..++-+||..|+-+|+|+.|+..-+.-+.+.... -.++.++|.++.-+|+++.|+++|++.
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 5554322 3567789999999999999999988877765432 357899999999999999999999998
Q ss_pred HhcC----CC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 001578 612 LGID----PS--NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDI 685 (1050)
Q Consensus 612 l~~~----p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~ 685 (1050)
+.+. .. .+...|.+|..|.-+.++++|+.++.+-+.+...-. -.+-.+.+++.+|.++...+..++|+.+..+
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~-DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE-DRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 7652 22 246788999999999999999999999988865432 2445567888999999999999999887766
Q ss_pred hhc
Q 001578 686 DGD 688 (1050)
Q Consensus 686 a~~ 688 (1050)
.++
T Consensus 341 hl~ 343 (639)
T KOG1130|consen 341 HLR 343 (639)
T ss_pred HHH
Confidence 543
No 95
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=1.6e-09 Score=117.13 Aligned_cols=296 Identities=14% Similarity=0.037 Sum_probs=227.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQAR 459 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 459 (1050)
+......|..-+..|+|.+|.....+.-+..+...-++..-+.+..+.|+++.|-.++.++-+..+++ ..+...++.+.
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 44566778888889999999999999888887777888888999999999999999999999985543 56778899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHH--HHHcCCHH
Q 001578 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYTYLGLA--LSSIGEYK 534 (1050)
Q Consensus 460 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~la~~--~~~~g~~~ 534 (1050)
...|++..|..-..++++..|.++.++.....+|...|++.+...++.+.-+..--+. .-+-+.+.. +.+..+-.
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999888776543222 112222211 12222222
Q ss_pred HHH---HHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001578 535 KAE---EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (1050)
Q Consensus 535 eA~---~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~a 611 (1050)
.+. .+++..-..-..++.....++.-+...|+.++|.+..+.+++..-+. .....++ ...-+++..=++..++.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~L~~~~~--~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-RLCRLIP--RLRPGDPEPLIKAAEKW 320 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-hHHHHHh--hcCCCCchHHHHHHHHH
Confidence 222 23333333334557778888888899999999999999998775443 2222222 23567888888889999
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 001578 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (1050)
Q Consensus 612 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~ 687 (1050)
++..|+++..+..+|.++.+.+.+.+|..+|+.++...|+.. .+...+.++...|+..+|-..++.++
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~--------~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS--------DYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh--------hHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888754 34456666777777777777776554
No 96
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4e-12 Score=138.12 Aligned_cols=125 Identities=21% Similarity=0.265 Sum_probs=111.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC----------------CcHHHHHHHHHHHHhhCHHHHHHHH
Q 001578 29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY----------------EIQDICNRAFCYSQLELHKHVIRDC 92 (1050)
Q Consensus 29 ~~~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~----------------~~~~~~nra~~~~~~~~~~~Ai~~~ 92 (1050)
..+.++.+...|..||.+|+.|+|..|+..|++|+..-. ...++.|+|.||+++++|.+|+..|
T Consensus 201 ~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c 280 (397)
T KOG0543|consen 201 AEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESC 280 (397)
T ss_pred hHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH
Confidence 445788889999999999999999999999999985531 1245889999999999999999999
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHH
Q 001578 93 DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA 153 (1050)
Q Consensus 93 ~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~ 153 (1050)
+++|.++|+|++|+||+|+|++.+|+|+.|+.+|++++++.|.+.....+|..+.......
T Consensus 281 ~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 281 NKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred HHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988888888777665543
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.40 E-value=6.3e-09 Score=122.03 Aligned_cols=133 Identities=14% Similarity=0.069 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001578 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (1050)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 461 (1050)
-+++.+|..+-..|++++|+++++++|+..|..++.++..|.++.+.|++.+|...++.|-.+++.+-.+-...+..+.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 35578899999999999999999999999999999999999999999999999999999999999988888888999999
Q ss_pred cCCHHHHHHHHHHHHhhCCC---C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001578 462 LGESVEAIQDLSKALEFEPN---S------ADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514 (1050)
Q Consensus 462 ~g~~~eA~~~l~kal~~~p~---~------~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p 514 (1050)
.|+.++|...+..-...+.+ + .......|.+|.+.|++..|+..|..+.+...
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999888776554411 1 12334568889999999999999988877643
No 98
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=8.4e-11 Score=119.25 Aligned_cols=186 Identities=18% Similarity=0.152 Sum_probs=136.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001578 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525 (1050)
Q Consensus 446 p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 525 (1050)
++....+-....+....|+.+-|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+...+...-.
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 34444555566666677777777777777777777777777777777777777777777777777777777777777767
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHH
Q 001578 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHK 602 (1050)
Q Consensus 526 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~ 602 (1050)
+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++.+-+.|.++..+..+|.+++-+| ++.
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777776655 456
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 001578 603 KAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (1050)
Q Consensus 603 eAi~~l~~al~~~p~~~~~~~~la~~~~~ 631 (1050)
-|.++|.++++++|.+..+++.+-.+-..
T Consensus 209 ~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 209 LARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 67777777777777666666655544433
No 99
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.38 E-value=1.5e-12 Score=135.75 Aligned_cols=115 Identities=19% Similarity=0.169 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHH
Q 001578 29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107 (1050)
Q Consensus 29 ~~~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~-~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~ 107 (1050)
.++++..+...+.+||.||++|.|++||.||+++|..+| |+.++.|||.+|+++..|..|..+|+.|+.+|-.|++||-
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 556666666669999999999999999999999999995 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHH
Q 001578 108 LKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQF 143 (1050)
Q Consensus 108 ~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~l 143 (1050)
|+|.+...+|...+|.++++.+|++.|+.-.-.+.+
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 999999999999999999999998888854443333
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.38 E-value=2.4e-11 Score=126.10 Aligned_cols=125 Identities=21% Similarity=0.268 Sum_probs=108.5
Q ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHCCC--HHHHHH
Q 001578 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL-HGLGQ--HKKAIK 606 (1050)
Q Consensus 530 ~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~-~~~g~--~~eAi~ 606 (1050)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|++++.+.|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567788888888889999999999999999998999999999999999999998888888888874 66677 588999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 607 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
.++++++.+|+++.+++.+|.++...|++++|+.++++++++.|.+.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999988887654
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.37 E-value=5.9e-11 Score=121.90 Aligned_cols=175 Identities=20% Similarity=0.193 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001578 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513 (1050)
Q Consensus 434 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~ 513 (1050)
+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+..++..+|...+..|++..|+..++++..+.
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 444444444555555555 5555555555555555555555555555555555555555566666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001578 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (1050)
Q Consensus 514 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 593 (1050)
|++..+|..+|.+|.+.|++++|...|.+++++.|+.+.+..|+|..|.-.|+++.|..++..+....+.+..+..+++.
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666665555555555555556666
Q ss_pred HHHHCCCHHHHHHHHH
Q 001578 594 LLHGLGQHKKAIKDLS 609 (1050)
Q Consensus 594 ~~~~~g~~~eAi~~l~ 609 (1050)
+....|++++|.....
T Consensus 211 ~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 211 VVGLQGDFREAEDIAV 226 (257)
T ss_pred HHhhcCChHHHHhhcc
Confidence 6556666555555443
No 102
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=3.7e-10 Score=114.62 Aligned_cols=185 Identities=18% Similarity=0.125 Sum_probs=165.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001578 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (1050)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (1050)
.+.....+-....+.+..|+.+-|..++++.....|++..+....|..+...|++++|+++|+..++.+|.+..++...-
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 34445556667778888999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---H
Q 001578 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE---Y 533 (1050)
Q Consensus 457 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~---~ 533 (1050)
.+...+|+.-+|++.+...++..+.+.++|..++.+|+..|+|++|.-++++++-+.|.++..+..+|.+++-+|. +
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999888764 5
Q ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHH
Q 001578 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFY 561 (1050)
Q Consensus 534 ~eA~~~l~~al~~~p~~~~~~~~la~~~ 561 (1050)
.-|.++|.++++++|.+..+++.+-.+-
T Consensus 208 ~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 208 ELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 6789999999999998887777665543
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.35 E-value=8.9e-11 Score=120.64 Aligned_cols=179 Identities=17% Similarity=0.147 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001578 398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477 (1050)
Q Consensus 398 ~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 477 (1050)
..+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|++.+|+..++++..
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 33666666667778888888 88888888888888888888888888888888888888888888888888888888888
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Q 001578 478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557 (1050)
Q Consensus 478 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 557 (1050)
+.|++..++..+|.+|.+.|+++.|...|.+++++.|.++.+..++|..+...|+++.|..++..+....+.+..+..++
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NL 208 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNL 208 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 001578 558 TQFYQDLANSEKALECLQQV 577 (1050)
Q Consensus 558 a~~~~~~g~~~~A~~~l~~a 577 (1050)
+.+....|++++|..+..+-
T Consensus 209 Al~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 209 ALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHhhcCChHHHHhhcccc
Confidence 88888888888888766543
No 104
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=8.9e-09 Score=112.42 Aligned_cols=318 Identities=14% Similarity=0.132 Sum_probs=266.0
Q ss_pred hhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001578 373 ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452 (1050)
Q Consensus 373 ~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 452 (1050)
.+..+..+...+...|..-..++++..|..+|+++|..+..+...|+..+.+-++......|...+++|+.+-|.-...|
T Consensus 65 ~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW 144 (677)
T KOG1915|consen 65 QIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW 144 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH
Confidence 34444556788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001578 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (1050)
Q Consensus 453 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 532 (1050)
+....+-..+|+...|.+.|++-+...| +..+|......-.+.+..+.|...|++.+-.+|+ ...|...+..-...|+
T Consensus 145 yKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 145 YKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999 6778888888888999999999999999998875 5778889999999999
Q ss_pred HHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCH---HHH
Q 001578 533 YKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQH---KKA 604 (1050)
Q Consensus 533 ~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~g~~---~eA 604 (1050)
..-|...|.+|++...++ ...+...|..-..++.++.|..+|+-|+..-|.+ ...+..+-..-.+-|+. +++
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 999999999999886655 2344556666667889999999999999998876 44454544444555654 334
Q ss_pred HH-----HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HhcCH
Q 001578 605 IK-----DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALY---TASKI 676 (1050)
Q Consensus 605 i~-----~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~---~~~~~ 676 (1050)
+- .|+..+..+|.|.++|+.+-.+....|+.+.-.+.|++|+..-|-..+..+.....|+....++| ...+.
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 32 47788889999999999999999999999999999999999888766655445555555555554 35677
Q ss_pred HHHHHHHHHhhccCCC
Q 001578 677 NSEFCWFDIDGDIDPL 692 (1050)
Q Consensus 677 ~~A~~~l~~a~~l~p~ 692 (1050)
+.+...|+.++++=|-
T Consensus 383 ertr~vyq~~l~lIPH 398 (677)
T KOG1915|consen 383 ERTRQVYQACLDLIPH 398 (677)
T ss_pred HHHHHHHHHHHhhcCc
Confidence 7788888877777665
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.35 E-value=7.9e-11 Score=122.18 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=107.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 001578 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (1050)
Q Consensus 387 ~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 466 (1050)
-+..|+..|+++......++.. +|.. -+...++.++++..++++++.+|++.+.|..+|.+|...|+++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 3445677777776544432221 1111 0112456677777778888888888888888888888888888
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578 467 EAIQDLSKALEFEPNSADILHERGIVN-FKFKD--FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (1050)
Q Consensus 467 eA~~~l~kal~~~p~~~~~~~~lg~~~-~~~g~--~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 543 (1050)
+|+..|++++.+.|+++.++..+|.++ ...|+ +++|...++++++.+|++..++..+|.+++..|++++|+.+++++
T Consensus 91 ~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 91 NALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888888887777777777764 56566 477778888888877777777777777777777777777777777
Q ss_pred HHhCcCcH
Q 001578 544 IQLDRNFL 551 (1050)
Q Consensus 544 l~~~p~~~ 551 (1050)
++..|.+.
T Consensus 171 L~l~~~~~ 178 (198)
T PRK10370 171 LDLNSPRV 178 (198)
T ss_pred HhhCCCCc
Confidence 77776553
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.34 E-value=1.3e-10 Score=140.96 Aligned_cols=154 Identities=14% Similarity=-0.008 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 001578 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (1050)
Q Consensus 501 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 580 (1050)
+++.-+.......|.++.++..||.+....|.+++|...++.++++.|++..+..+++.++.+.+++++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 33344444455578889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 581 ~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
+|+++.+++.+|.++.++|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-..
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR 223 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence 99999999999999999999999999999999988999999999999999999999999999999998766543
No 107
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=5.4e-10 Score=117.53 Aligned_cols=292 Identities=14% Similarity=0.100 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001578 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (1050)
Q Consensus 383 ~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (1050)
..+.+|.+++..|+|++|+..|..+.+.+.-+.+...++|.|++.+|.|.+|.....+ .|+.+-....+-.+..+.
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK----APKTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHHh
Confidence 3344455555555555555555554444433444455555555555555554443333 233333333333333334
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001578 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542 (1050)
Q Consensus 463 g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 542 (1050)
++-++-...-+. +. +..+-...++.+++..-.|.+|++.|.+.+.-+|+......++|.+|+++.-++-+.+.+.-
T Consensus 135 ndEk~~~~fh~~-Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 135 NDEKRILTFHSS-LQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred CcHHHHHHHHHH-Hh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 433332222111 11 11122233444444444555555555555555555555555555555555555555555555
Q ss_pred HHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Q 001578 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621 (1050)
Q Consensus 543 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~ 621 (1050)
-+...|+..-+....+...++.=+-..|..-....... +...+.+-...-.-+.--.+-+.|++.+-..+.. -|++
T Consensus 211 YL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEA 287 (557)
T KOG3785|consen 211 YLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEA 287 (557)
T ss_pred HHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHh
Confidence 55555555555544444444332222222222222111 1111111000000000001112233333322222 2467
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 001578 622 LYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGD 688 (1050)
Q Consensus 622 ~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~ 688 (1050)
..++...|..+++.++|+...+ +++|..|.-++..+..+...|.......+..-|...|+..++
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~ 351 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGE 351 (557)
T ss_pred hhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc
Confidence 7788888888888888877654 467888877777777766666665555566666666665543
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.33 E-value=1.7e-10 Score=140.39 Aligned_cols=223 Identities=16% Similarity=0.077 Sum_probs=188.6
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 001578 409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488 (1050)
Q Consensus 409 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~ 488 (1050)
..+|.+..++..++..+...+++++|+..++.+++..|+...+++.+|.++.+.+++..|... .++...+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~-------- 94 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS-------- 94 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc--------
Confidence 356888999999999999999999999999999999999999999999999999987666555 4444443
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChH
Q 001578 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (1050)
Q Consensus 489 lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 568 (1050)
...++ .+++++...+...+.+..+++.+|.||..+|+.++|...|+++++.+|+++.++.++|..|... +.+
T Consensus 95 ------~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 95 ------QNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred ------cccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 33344 5666666677778888889999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH--------------------HHHHH
Q 001578 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY--------------------LRASC 628 (1050)
Q Consensus 569 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~--------------------~la~~ 628 (1050)
+|+.++.+|+.. +...++|.++.++..+.+..+|++.+.+. -+-.+
T Consensus 167 KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 167 KAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 999999999876 66677899999999999999988765422 23377
Q ss_pred HHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001578 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF 663 (1050)
Q Consensus 629 ~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~ 663 (1050)
|...+++++++..++.+++.+|++..+....+.+|
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y 267 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNKNNKAREELIRFY 267 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 88899999999999999999999876544444333
No 109
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=5.4e-09 Score=113.07 Aligned_cols=276 Identities=16% Similarity=0.050 Sum_probs=219.3
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001578 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (1050)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (1050)
..+..+..+...-.++.-+...-..|+++.|-.++.++-+..++ ...+...++......|+++.|.....++++..|.+
T Consensus 107 ~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~ 186 (400)
T COG3071 107 LRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRH 186 (400)
T ss_pred HHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCC
Confidence 34444555666677778888899999999999999999988444 35678889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HH--HHHHHHHH--HHHcCCHHHHH---HHHHHHHHhCCCCHHHH
Q 001578 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-AD--ILHERGIV--NFKFKDFNAAV---EDLSACVKLDKENKSAY 520 (1050)
Q Consensus 449 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~--~~~~lg~~--~~~~g~~~~A~---~~l~~al~~~p~~~~~~ 520 (1050)
+.+.....++|...|++.+...++.+.-+..--+ .+ -+-+.+.. +.+.++-..+. .+++..-..-..++...
T Consensus 187 ~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~ 266 (400)
T COG3071 187 PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELV 266 (400)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHH
Confidence 9999999999999999999999998877654322 22 12222211 12222222222 34444444444567888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Q 001578 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600 (1050)
Q Consensus 521 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 600 (1050)
..++.-+...|+.++|.+....+++..-+.. ....++ ...-+++..=++..++.+...|+++..+..+|.++.+.+.
T Consensus 267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~ 343 (400)
T COG3071 267 VAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL 343 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH
Confidence 8899999999999999999999998765433 222222 2357889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (1050)
Q Consensus 601 ~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 649 (1050)
+.+|..+|+.+++..|+ ...+..+|.++.++|+..+|.+.++.++.+.
T Consensus 344 w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 344 WGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999998886 6788899999999999999999999998543
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.31 E-value=2.2e-09 Score=139.10 Aligned_cols=311 Identities=13% Similarity=0.010 Sum_probs=234.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA--- 448 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 448 (1050)
+......+..+...|++++|...+..+....+. .......+|.++...|++++|...+++++...+..
T Consensus 409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (903)
T PRK04841 409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY 488 (903)
T ss_pred cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence 445567788888999999999999988764321 13445567888899999999999999999865542
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Q 001578 449 --GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE----- 515 (1050)
Q Consensus 449 --~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~----- 515 (1050)
..+...+|.++...|++++|...+++++...... ...+..+|.++...|++++|...+++++.....
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 568 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ 568 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 2356778889999999999999999998764321 245677899999999999999999999886321
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---
Q 001578 516 ---NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-----FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--- 584 (1050)
Q Consensus 516 ---~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--- 584 (1050)
....+..+|.++...|++++|...+.+++..... ...++..+|.++...|++++|...+.++..+.+..
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 1234567888999999999999999999876332 24566678999999999999999999997763321
Q ss_pred HHHH----HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH
Q 001578 585 SKAY----HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI----ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (1050)
Q Consensus 585 ~~~~----~~la~~~~~~g~~~eAi~~l~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~ 656 (1050)
.... ......+...|+.+.|...+.......+... ..+..++.++...|++++|...+++++........ .
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~-~ 727 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRL-M 727 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCc-h
Confidence 1111 1123445568999999999877665333222 22567899999999999999999999987543222 1
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC
Q 001578 657 VLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPL 692 (1050)
Q Consensus 657 ~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~ 692 (1050)
......+...|.++...|+.++|...+.+++++...
T Consensus 728 ~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 728 SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 234456777899999999999999999999887644
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.31 E-value=2.8e-10 Score=138.02 Aligned_cols=140 Identities=10% Similarity=-0.001 Sum_probs=88.6
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Q 001578 478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557 (1050)
Q Consensus 478 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l 557 (1050)
..|++++++.++|.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|+++.+++.+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 001578 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (1050)
Q Consensus 558 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~ 617 (1050)
|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 666666666666666666666666666666666666666666666666666666665443
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.30 E-value=1.2e-10 Score=133.48 Aligned_cols=224 Identities=17% Similarity=0.139 Sum_probs=191.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001578 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (1050)
Q Consensus 414 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~ 493 (1050)
.......+|..+...|-...|+..|++. ..|.....||...|+..+|.....+-++ .|.++..|..+|.+.
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL 467 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence 3455677889999999999999999885 5566788899999999999999888888 666888888888887
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHH
Q 001578 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573 (1050)
Q Consensus 494 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 573 (1050)
....-|++|.++.+.. +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.|.++
T Consensus 468 ~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred cChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 7776666666666543 3446677788788889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 001578 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (1050)
Q Consensus 574 l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 652 (1050)
|..++..+|++.++|.+++.+|...++-.+|...+++|++.+-++..+|.+.-.+....|.+++|++.|.+.+.+.-+.
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999999999998888999999999999999999999999988875443
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.28 E-value=4.1e-10 Score=129.36 Aligned_cols=224 Identities=17% Similarity=0.144 Sum_probs=199.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001578 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (1050)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (1050)
.|........+|..++..|-...|+.+|++. ..+-....||...|+..+|.....+-++ .|.++..|..+|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 4556677788999999999999999999985 4566788999999999999999999888 777788888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001578 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (1050)
Q Consensus 457 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA 536 (1050)
.+.....-|++|.++.+.. ++.+...+|......++|.++.++++..++++|-....|+.+|.+..+.++++.|
T Consensus 465 Dv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 7776665555555554433 4557788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 001578 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (1050)
Q Consensus 537 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~ 615 (1050)
.++|..++.++|++..+|.+++.+|...++-.+|...+.++++.+-++..+|.+...+....|.+++|+..|.+.+.+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998763
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.27 E-value=1.9e-08 Score=130.42 Aligned_cols=268 Identities=17% Similarity=0.058 Sum_probs=205.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 001578 386 SRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKR 454 (1050)
Q Consensus 386 ~~a~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 454 (1050)
.+|..+...|++++|...+++++...+.. ..+...+|.++...|++++|...+.+++...... ..++..
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 45677888999999999999998854432 2356778889999999999999999998764321 245677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHH
Q 001578 455 RGQARAALGESVEAIQDLSKALEFEPN--------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----NKSAYT 521 (1050)
Q Consensus 455 la~~~~~~g~~~eA~~~l~kal~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~-----~~~~~~ 521 (1050)
+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++..... ....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 899999999999999999999886321 1234567889999999999999999999876332 245566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHH----HHHHHHHHcCChHHHHHHHHHHHhhCCCCH----HHHHH
Q 001578 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWG----HLTQFYQDLANSEKALECLQQVLYIDKRFS----KAYHL 590 (1050)
Q Consensus 522 ~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~----~la~~~~~~g~~~~A~~~l~~al~~~p~~~----~~~~~ 590 (1050)
.+|.++...|++++|...+.++..+.+.. ..... .....+...|+.+.|...+.......+... ..+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 78999999999999999999997764322 11111 122445568899999998877654332222 22567
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH
Q 001578 591 RGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (1050)
Q Consensus 591 la~~~~~~g~~~eAi~~l~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 653 (1050)
++.++...|++++|+..+++++.... ....++..+|.++...|+.++|...+.+++++.....
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 89999999999999999999987632 2245788899999999999999999999999886543
No 115
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.26 E-value=5.2e-11 Score=130.52 Aligned_cols=258 Identities=13% Similarity=0.049 Sum_probs=196.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 001578 388 GIAQVNEGKYASAISIFDQILKEDP-MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (1050)
Q Consensus 388 a~~~~~~g~~~~Ai~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 466 (1050)
.+.++..|+|..++..++ ....++ ........+.+++..+|+++..+...... .+....+...++..+...++.+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchH
Confidence 345677899999998777 323333 23456788899999999988776555332 2333445566777666556677
Q ss_pred HHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578 467 EAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (1050)
Q Consensus 467 eA~~~l~kal~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 544 (1050)
.++..++..+.... .++.+....|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777666543322 24556677788888899999999988764 567888888899999999999999999999
Q ss_pred HhCcCcHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Q 001578 545 QLDRNFLEAWGHLTQFYQDLA--NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622 (1050)
Q Consensus 545 ~~~p~~~~~~~~la~~~~~~g--~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~ 622 (1050)
+.+.+..-.....+.+....| .+.+|...|++..+..+..+..+..+|.++..+|+|++|...+.+++..+|++++++
T Consensus 159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 888876655555555655555 699999999999888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCH-HHHHHHHHHHHHhcCCCHH
Q 001578 623 YLRASCYHAIGEY-REAIKDYDAALDLELDSME 654 (1050)
Q Consensus 623 ~~la~~~~~~g~~-~eA~~~~~~al~l~p~~~~ 654 (1050)
.+++.+...+|+. +.+.+++.+....+|+++-
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 9999999999998 6677888998899999875
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.24 E-value=1.6e-10 Score=112.71 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=97.4
Q ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 001578 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (1050)
Q Consensus 538 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~ 617 (1050)
+.+++++..+|++..+.+.+|..+...|++++|+..+++++..+|.++.++..+|.++..+|++++|+.++++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578 618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 618 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
++..++.+|.++...|++++|+..|+++++++|++..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 8888888888888888888888888888888887765
No 117
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=2.6e-08 Score=102.96 Aligned_cols=384 Identities=17% Similarity=0.155 Sum_probs=262.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Q 001578 45 KLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123 (1050)
Q Consensus 45 ~~~~~~~~~~Ai~~y~~ai~~~~-~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~ 123 (1050)
.+.+...|..||++...-.+.+| +...+..+|.||...++|..|-..+++.=.+.|...+..+--++.+...+.+.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 45677889999999999988885 66669999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCCcccccccc
Q 001578 124 SVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQ 203 (1050)
Q Consensus 124 ~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 203 (1050)
.+..... +++.-..+.+++...+. +.. +
T Consensus 99 rV~~~~~----D~~~L~~~~lqLqaAIk-----------Yse-~------------------------------------ 126 (459)
T KOG4340|consen 99 RVAFLLL----DNPALHSRVLQLQAAIK-----------YSE-G------------------------------------ 126 (459)
T ss_pred HHHHHhc----CCHHHHHHHHHHHHHHh-----------ccc-c------------------------------------
Confidence 8887772 22222222222221111 000 0
Q ss_pred ccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccccCCCCCccC
Q 001578 204 SRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDI 283 (1050)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~~~~ 283 (1050)
++ .-
T Consensus 127 ------------------------------------Dl----------------------------------------~g 130 (459)
T KOG4340|consen 127 ------------------------------------DL----------------------------------------PG 130 (459)
T ss_pred ------------------------------------cC----------------------------------------cc
Confidence 00 00
Q ss_pred CCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHHHHhhhHHH
Q 001578 284 CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAK 363 (1050)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~ 363 (1050)
T Consensus 131 -------------------------------------------------------------------------------- 130 (459)
T KOG4340|consen 131 -------------------------------------------------------------------------------- 130 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHHHHHHHhhccC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578 364 RNKKFCVTRISKSK--SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441 (1050)
Q Consensus 364 ~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 441 (1050)
...+..+. ..+++.....|...++.|+|++|++-|+.+++....++-.-+++|.++++.|+++.|+++....
T Consensus 131 ------~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 131 ------SRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEI 204 (459)
T ss_pred ------hHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 00001111 2346667788999999999999999999999999889999999999999999999999998887
Q ss_pred HHh----CCCc-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHH
Q 001578 442 IQS----NPSA-------------------------GEAWKRRGQARAALGESVEAIQDLSKALEFEP--NSADILHERG 490 (1050)
Q Consensus 442 l~~----~p~~-------------------------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p--~~~~~~~~lg 490 (1050)
++. .|+. .+++...+.++++.++++.|.+.+...--... -++..+.+++
T Consensus 205 ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~A 284 (459)
T KOG4340|consen 205 IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQA 284 (459)
T ss_pred HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHH
Confidence 754 3321 23566778888899999988876643321111 2355677776
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHH-Hc
Q 001578 491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-----LEAWGHLTQFYQ-DL 564 (1050)
Q Consensus 491 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-----~~~~~~la~~~~-~~ 564 (1050)
..- ..+++.+...-+.-.+.++|--.+...++-.+|.+..-++-|...+-+ +|+. ....+.+-..+. ..
T Consensus 285 l~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE----n~~lTyk~L~~Yly~LLdaLIt~q 359 (459)
T KOG4340|consen 285 LMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE----NAHLTYKFLTPYLYDLLDALITCQ 359 (459)
T ss_pred Hhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh----CcchhHHHhhHHHHHHHHHHHhCC
Confidence 543 346677778888888889998888888888889888888877765543 3432 122233333332 34
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHH-HHHHH--HCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 001578 565 ANSEKALECLQQVLYIDKRFSKAYHLR-GLLLH--GLG---QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638 (1050)
Q Consensus 565 g~~~~A~~~l~~al~~~p~~~~~~~~l-a~~~~--~~g---~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA 638 (1050)
-..++|.+-+...-.... .-+..+ +.+.. ..+ ....|++.|+.++++. -.+....|.+|....+|..+
T Consensus 360 T~pEea~KKL~~La~~l~---~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~v 433 (459)
T KOG4340|consen 360 TAPEEAFKKLDGLAGMLT---EKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMV 433 (459)
T ss_pred CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHH
Confidence 456666665554332111 111111 11111 111 2334566666666652 45778889999999999999
Q ss_pred HHHHHHHHHhcCCCH
Q 001578 639 IKDYDAALDLELDSM 653 (1050)
Q Consensus 639 ~~~~~~al~l~p~~~ 653 (1050)
.+.|+...+...++.
T Consensus 434 Ek~Fr~SvefC~ehd 448 (459)
T KOG4340|consen 434 EKIFRKSVEFCNDHD 448 (459)
T ss_pred HHHHHHHHhhhcccc
Confidence 999999988876553
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.21 E-value=2.8e-10 Score=110.91 Aligned_cols=116 Identities=23% Similarity=0.233 Sum_probs=75.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 001578 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (1050)
Q Consensus 505 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 584 (1050)
.+++++..+|++..+.+.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Q 001578 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (1050)
Q Consensus 585 ~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~ 620 (1050)
+..++.+|.++...|++++|+..|+++++.+|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 666666666666666666666666666666665544
No 119
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=2.1e-09 Score=110.80 Aligned_cols=265 Identities=15% Similarity=0.081 Sum_probs=196.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001578 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470 (1050)
Q Consensus 391 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 470 (1050)
+.+..+|.+|++++..-.+..|.+...+..+|.||+...+|..|..+|++.-.+.|.........++.+++.+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 46778899999999999999998888999999999999999999999999999999988888888999999999999988
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 001578 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548 (1050)
Q Consensus 471 ~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 548 (1050)
..........-..++...-+-+.+..+++..+....++ -| +.+....+.|.+.++.|++++|.+-|+.+++...
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHh----ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 87766543111233444556666667777666555544 34 4567788888888888888888888888888888
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCC-------------------------HHHHHHHHHHHHHCC
Q 001578 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYI----DKRF-------------------------SKAYHLRGLLLHGLG 599 (1050)
Q Consensus 549 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~----~p~~-------------------------~~~~~~la~~~~~~g 599 (1050)
-.+-.-++++.++++.++++.|+++..+.++. .|.. .+++...+.++++.|
T Consensus 176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~ 255 (459)
T KOG4340|consen 176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLR 255 (459)
T ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence 88888888888888888888888887776643 2311 245666778888888
Q ss_pred CHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 001578 600 QHKKAIKDLSSGLGID--PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC 660 (1050)
Q Consensus 600 ~~~eAi~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~ 660 (1050)
+++.|.+.+...--.. .-+|..+.++|..-. .+++.+..+-+.-.+.++|-.++.+.++.
T Consensus 256 n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlL 317 (459)
T KOG4340|consen 256 NYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLL 317 (459)
T ss_pred cHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHH
Confidence 8888877654321111 113556667665433 46677777778888888887766554443
No 120
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=3.2e-10 Score=118.63 Aligned_cols=120 Identities=25% Similarity=0.343 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (1050)
++-+-..|.-++..++|.+|+..|.+||+++|.++..|.++|.+|.++|.++.|++.++.++.++|.+..+|.++|.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 44556778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 001578 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500 (1050)
Q Consensus 461 ~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~ 500 (1050)
.+|++++|++.|+++++++|++.....+|..+-..+++..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999877777766666555444
No 121
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=5.6e-11 Score=119.17 Aligned_cols=103 Identities=26% Similarity=0.327 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCc-HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 001578 34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEI-QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112 (1050)
Q Consensus 34 ~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~~~-~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~ 112 (1050)
+.+...+.+++++|..+.|+.||.+|.+||..+|+. .+|.|||.||+++.+|+.+..+|.+|++++|+.++++|.+|++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 345666789999999999999999999999999766 6688999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCC
Q 001578 113 FSALGRKEEALSVWEKGYEHALHQ 136 (1050)
Q Consensus 113 ~~~lg~~~~A~~~~~~al~~~~~~ 136 (1050)
++....|++|+..+++|+++...+
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHhhccccHHHHHHHHHHHHHhcC
Confidence 999999999999999998886444
No 122
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.14 E-value=5.3e-10 Score=127.09 Aligned_cols=112 Identities=23% Similarity=0.254 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 001578 39 ARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG 117 (1050)
Q Consensus 39 ~r~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg 117 (1050)
.+.++..+|..|+|++|+.+|++||+.+ .++.+++++|.+|+++|++++|+.++++||+++|++..+|+++|.+|+.+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 5678999999999999999999999999 566779999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccCChHhHHHHHHHHHHH
Q 001578 118 RKEEALSVWEKGYEHALHQSADLKQFLELEELL 150 (1050)
Q Consensus 118 ~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~ 150 (1050)
++++|+..|++++++.|+.+.....+..+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987766655554444
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.10 E-value=3.2e-09 Score=102.57 Aligned_cols=112 Identities=16% Similarity=0.090 Sum_probs=96.6
Q ss_pred HHHhC-cCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Q 001578 543 AIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621 (1050)
Q Consensus 543 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~ 621 (1050)
...+. ++..+..+.+|..+...|++++|...|+-+..++|.+...|+++|.++..+|++++|+..|.+++.++|+++.+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34556 67778888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578 622 LYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 622 ~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
++++|.|+...|+.+.|.+.|+.++...-+.++
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 999999999999999999999999888754443
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.07 E-value=3.6e-08 Score=109.56 Aligned_cols=153 Identities=20% Similarity=0.164 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001578 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491 (1050)
Q Consensus 412 p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~ 491 (1050)
|....+.+..+..++..|++++|+..+...+...|+++..+...+.++...++..+|.+.+++++.+.|+...+..++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 66777778888888888888888888888877788887777777888888888888888888888888877777777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHH
Q 001578 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571 (1050)
Q Consensus 492 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 571 (1050)
.+++.|++.+|+..++..+..+|+++..|..||..|..+|+..+|...+ +..|...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 8888888888887777777777777777777777777777766654433 34455567777777
Q ss_pred HHHHHHHhhC
Q 001578 572 ECLQQVLYID 581 (1050)
Q Consensus 572 ~~l~~al~~~ 581 (1050)
..+..+.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 7777776654
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.07 E-value=3.6e-08 Score=109.55 Aligned_cols=153 Identities=20% Similarity=0.170 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 001578 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (1050)
Q Consensus 480 p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~ 559 (1050)
|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...++.++|.+.+++++.++|..+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 44555556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 001578 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639 (1050)
Q Consensus 560 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 639 (1050)
+|.+.|++.+|+..++..+..+|+++..|..+|..|..+|+..+|.. ..|..|...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHH
Confidence 66666666666666666666666666666666666666655544433 2334444455555555
Q ss_pred HHHHHHHHhc
Q 001578 640 KDYDAALDLE 649 (1050)
Q Consensus 640 ~~~~~al~l~ 649 (1050)
..+.++.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 5555555544
No 126
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.06 E-value=7.7e-06 Score=93.22 Aligned_cols=135 Identities=16% Similarity=0.076 Sum_probs=87.4
Q ss_pred hccccchhHHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC
Q 001578 23 IDELVRVDSVMASAITARIELAKL--CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99 (1050)
Q Consensus 23 ~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~ 99 (1050)
+..++..-.+.-.....|.+..+. -....|+.--.+|++++..- .-|..+.--.....++|+...--..+++||-.=
T Consensus 53 l~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraL 132 (835)
T KOG2047|consen 53 LKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRAL 132 (835)
T ss_pred HHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 344555555555666555444332 23345556667777777654 555665555667788888888888999998766
Q ss_pred CC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhh
Q 001578 100 PT--LLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDR 157 (1050)
Q Consensus 100 P~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l 157 (1050)
|- +.+.+-..-.-...-+-.+-++..|++-|+++|......-..+.....+.++++.+
T Consensus 133 pvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~l 192 (835)
T KOG2047|consen 133 PVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRL 192 (835)
T ss_pred chHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHH
Confidence 62 23333333344455677789999999999999998877666555555555555555
No 127
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.06 E-value=1.6e-05 Score=90.78 Aligned_cols=317 Identities=15% Similarity=0.135 Sum_probs=238.0
Q ss_pred HHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK-EDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQS 444 (1050)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~-~~p~~-----~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (1050)
.-++.++|.++..+..+..+ ..|+..+-+..|..++. .+|.. ...+...|..|...|+.+.|...|+++.+.
T Consensus 339 sVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 44567889999999887655 47889999999999886 46643 467899999999999999999999999987
Q ss_pred CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------------CHHHHHHHHHHHHHcCCHHHH
Q 001578 445 NPS----AGEAWKRRGQARAALGESVEAIQDLSKALEFEPN------------------SADILHERGIVNFKFKDFNAA 502 (1050)
Q Consensus 445 ~p~----~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~------------------~~~~~~~lg~~~~~~g~~~~A 502 (1050)
.-. -..+|...|..-....+++.|+.++++|...... +..+|..++.+....|-++..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 533 3678999999999999999999999998765221 134677888888899999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHH---HHcCChHHHHHHHHHH
Q 001578 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFY---QDLANSEKALECLQQV 577 (1050)
Q Consensus 503 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p--~~~~~~~~la~~~---~~~g~~~~A~~~l~~a 577 (1050)
...|++.+.+.--.+....+.|..+....-+++|.+.|++.+.+.+ .-.++|...-..+ +.-...+.|..+|++|
T Consensus 497 k~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 497 KAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999999999988999999999999999999999999999998864 4456665433322 2345789999999999
Q ss_pred HhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHhcC
Q 001578 578 LYIDKRF--SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH-----AIGEYREAIKDYDAALDLEL 650 (1050)
Q Consensus 578 l~~~p~~--~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~-----~~g~~~eA~~~~~~al~l~p 650 (1050)
++..|.. -.++...|.+-..-|--..|+..|++|-..-+. .-.+.+-.+|. ..| ...-...|++|++.-|
T Consensus 577 L~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~--a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp 653 (835)
T KOG2047|consen 577 LDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE--AQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLP 653 (835)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCC
Confidence 9988832 245667788888889999999999998765433 22222222222 222 3456788999999988
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc-CCC-CHHHH
Q 001578 651 DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI-DPL-FKEYW 697 (1050)
Q Consensus 651 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l-~p~-~~e~w 697 (1050)
+....- ....-+...-..|..+.|...|.-+-++ +|. ..++|
T Consensus 654 ~~~~r~-----mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW 697 (835)
T KOG2047|consen 654 DSKARE-----MCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFW 697 (835)
T ss_pred hHHHHH-----HHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHH
Confidence 764311 1122233345678999999888666554 443 44555
No 128
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.06 E-value=4.6e-09 Score=101.46 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=94.2
Q ss_pred hhccC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 001578 373 ISKSK-SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451 (1050)
Q Consensus 373 ~~~~~-~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 451 (1050)
+.... +...+..+..|..++..|++++|...|+-+...+|.++..++++|.++..+|++++|+..|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34445 66678888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001578 452 WKRRGQARAALGESVEAIQDLSKALEFEP 480 (1050)
Q Consensus 452 ~~~la~~~~~~g~~~eA~~~l~kal~~~p 480 (1050)
+.+.|.++...|+.+.|...|+.++....
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998888763
No 129
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.01 E-value=2.9e-09 Score=116.79 Aligned_cols=235 Identities=16% Similarity=0.068 Sum_probs=181.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHH
Q 001578 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN--PSAGEAWKRRG 456 (1050)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 456 (1050)
...+..+.+.+.++.+|+++..+.-... ..+....+...++..+...++.+.++..+...+... +.++......|
T Consensus 33 ~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A 109 (290)
T PF04733_consen 33 NKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA 109 (290)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 3466677888899999998877655433 223334555666666655456667776665544332 23455666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHH
Q 001578 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG--EYK 534 (1050)
Q Consensus 457 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g--~~~ 534 (1050)
.++...|++++|++.+.+. .+.++......++...++++.|.+.++.+.+.+.+..-.....+++....| .+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHH
Confidence 8888899999999988764 578888889999999999999999999998888877766667777777766 589
Q ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHh
Q 001578 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH-KKAIKDLSSGLG 613 (1050)
Q Consensus 535 eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~-~eAi~~l~~al~ 613 (1050)
+|...|++..+..+..+..+..++.++..+|++++|...+++++..+|.++.++.+++.+...+|+. +.+.+++.+...
T Consensus 185 ~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 185 DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 9999999988888888999999999999999999999999999999999999999999999999998 667778888888
Q ss_pred cCCCCHHH
Q 001578 614 IDPSNIEC 621 (1050)
Q Consensus 614 ~~p~~~~~ 621 (1050)
.+|+++.+
T Consensus 265 ~~p~h~~~ 272 (290)
T PF04733_consen 265 SNPNHPLV 272 (290)
T ss_dssp HTTTSHHH
T ss_pred hCCCChHH
Confidence 89987644
No 130
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.99 E-value=7.7e-09 Score=117.63 Aligned_cols=107 Identities=22% Similarity=0.299 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001578 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464 (1050)
Q Consensus 385 ~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 464 (1050)
...|..++..|+|++|+.+|++++..+|+++.+++.+|.++...|++++|+..+++++.++|.++.+++.+|.++..+|+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001578 465 SVEAIQDLSKALEFEPNSADILHERGI 491 (1050)
Q Consensus 465 ~~eA~~~l~kal~~~p~~~~~~~~lg~ 491 (1050)
+++|+..|++++.++|++..+...++.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 555555555555555544444444333
No 131
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.99 E-value=2.1e-06 Score=90.15 Aligned_cols=223 Identities=32% Similarity=0.408 Sum_probs=138.6
Q ss_pred CCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001578 429 RELEAAISDFTEAIQSNPS--AGEAWKRRGQARAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVE 504 (1050)
Q Consensus 429 g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~l~kal~--~~p~~~~~~~~lg~~~~~~g~~~~A~~ 504 (1050)
+.+..+...+..++...+. ........+..+...+++..+...+...+. ..+.....+...+..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444444443 244455555555555555555555555554 444455555555555555555666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCc---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 001578 505 DLSACVKLDKENKSAYTYLGL-ALSSIGEYKKAEEAHLKAIQLDR---NFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (1050)
Q Consensus 505 ~l~~al~~~p~~~~~~~~la~-~~~~~g~~~eA~~~l~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 580 (1050)
.+..++...+.........+. ++...|+++.|...+.+++...| .........+..+...++++.|+..+.+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 666665555554433444444 56666666666666666666554 23444555555566667777777777777777
Q ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578 581 DKR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (1050)
Q Consensus 581 ~p~-~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 651 (1050)
.+. ....+..++..+...+++++|+..+..++...|.....+..++..+...+.+++|...+.+++...|.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 766 56777777777777777777777777777777776666677777777666678888888888877776
No 132
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=6.6e-09 Score=104.58 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-------------------CCcHHHHHHHHHHHHhhCHHHHH
Q 001578 29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-------------------YEIQDICNRAFCYSQLELHKHVI 89 (1050)
Q Consensus 29 ~~~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~-------------------~~~~~~~nra~~~~~~~~~~~Ai 89 (1050)
.++-|......|.+||.+|..|+|.+|+..|..||..- ...+++.|.+.|++..|+|-+++
T Consensus 171 ddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevl 250 (329)
T KOG0545|consen 171 DDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVL 250 (329)
T ss_pred chHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHH
Confidence 34556666678899999999999999999999998331 22456889999999999999999
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHH
Q 001578 90 RDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLEL 146 (1050)
Q Consensus 90 ~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l 146 (1050)
..|...|..+|++++|||++|.+....=+.++|..+|.+++++.|.....+..-+.+
T Consensus 251 eh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~ 307 (329)
T KOG0545|consen 251 EHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRL 307 (329)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988888776555443333
No 133
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.1e-09 Score=111.68 Aligned_cols=99 Identities=25% Similarity=0.264 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCc----HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHH
Q 001578 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEI----QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK 109 (1050)
Q Consensus 35 ~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~----~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~ 109 (1050)
.|...|.+||.+|+.++|..|+.+|+++|... +++ .+|.|||+|.+.+|+|..|+.+|.+|+.++|++++|++|=
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 56778999999999999999999999999887 444 4599999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhc
Q 001578 110 GCAFSALGRKEEALSVWEKGYEHA 133 (1050)
Q Consensus 110 g~~~~~lg~~~~A~~~~~~al~~~ 133 (1050)
+.|++.+.++++|+...+..+.+.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999888885443
No 134
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.96 E-value=2e-06 Score=90.29 Aligned_cols=224 Identities=29% Similarity=0.351 Sum_probs=199.1
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001578 394 EGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQ--SNPSAGEAWKRRGQARAALGESVEAI 469 (1050)
Q Consensus 394 ~g~~~~Ai~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~eA~ 469 (1050)
.+.+..+...+...+...+. ........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 57788888888888888876 478888999999999999999999999987 68888899999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578 470 QDLSKALEFEPNSADILHERGI-VNFKFKDFNAAVEDLSACVKLDK---ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (1050)
Q Consensus 470 ~~l~kal~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~l~~al~~~p---~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 545 (1050)
..+.+++...+.........+. ++...|+++.|...+.+++...| .........+..+...++++.|+..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 9999999988877555666666 89999999999999999988776 3556677777778899999999999999999
Q ss_pred hCcC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 001578 546 LDRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (1050)
Q Consensus 546 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~ 617 (1050)
..+. ....+..++..+...++++.|...+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999 69999999999999999999999999999999987778888888888888899999999999999887
No 135
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.96 E-value=1.3e-07 Score=101.27 Aligned_cols=178 Identities=16% Similarity=0.118 Sum_probs=134.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 001578 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---LIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW 452 (1050)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 452 (1050)
.++..++..|..++..|+|++|+..|++++...|..+.+ .+.+|.+++..+++++|+..+++.++.+|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 468889999999999999999999999999999988654 4899999999999999999999999999876 5578
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578 453 KRRGQARAALG---------------E---SVEAIQDLSKALEFEPNSADI---LHERGIVNFKFKDFNAAVEDLSACVK 511 (1050)
Q Consensus 453 ~~la~~~~~~g---------------~---~~eA~~~l~kal~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~l~~al~ 511 (1050)
+.+|.++...+ + ..+|+..|++.++..|+..-+ ...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~---------------- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR---------------- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH----------------
Confidence 88888765443 1 346778888888888876421 1111111110
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChHHHHHHHHH
Q 001578 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQ 576 (1050)
Q Consensus 512 ~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~ 576 (1050)
-..--+..|..|.+.|.+..|+.-++.+++..|+. .+++..++.+|..+|..++|......
T Consensus 174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 01222456777788888888888888888877765 56777788888888888887776554
No 136
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.93 E-value=1.1e-07 Score=99.38 Aligned_cols=172 Identities=20% Similarity=0.220 Sum_probs=119.0
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 001578 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW 452 (1050)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 452 (1050)
.++..++..|..++..|+|.+|+..|++++...|.. +.+.+.+|.+++..|+++.|+..+++.++..|++ +.++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 357789999999999999999999999999998875 6789999999999999999999999999999886 4678
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001578 453 KRRGQARAALG-----------ESVEAIQDLSKALEFEPNSADIL---HERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518 (1050)
Q Consensus 453 ~~la~~~~~~g-----------~~~eA~~~l~kal~~~p~~~~~~---~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~ 518 (1050)
+.+|.++..+. ...+|+..|+..+...|++..+- ..+..+- ..+ ..
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~--------------~~l------a~ 142 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR--------------NRL------AE 142 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH--------------HHH------HH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH--------------HHH------HH
Confidence 88888876542 23477778888888877663221 1111110 000 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChHHH
Q 001578 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKA 570 (1050)
Q Consensus 519 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A 570 (1050)
--+.+|..|.+.|.+..|+..++.+++..|+. .+++..++.+|..+|..+.|
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 22456777777777777777777777777766 45667777777777777644
No 137
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.93 E-value=1.3e-09 Score=120.85 Aligned_cols=118 Identities=24% Similarity=0.282 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 001578 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113 (1050)
Q Consensus 35 ~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~~-~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~ 113 (1050)
.+...+.+++.+|.-+.|+.|+..|++||+++|| ..++.|||.++++.+++..|+.++.+||+++|.+.++|+++|.+.
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 4455667899999999999999999999999965 455889999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHH
Q 001578 114 SALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152 (1050)
Q Consensus 114 ~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~ 152 (1050)
+.++++.+|+.+|++...+.|+.+...+.+.+.+-...+
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988888777766553
No 138
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.90 E-value=2.6e-07 Score=99.08 Aligned_cols=182 Identities=15% Similarity=0.057 Sum_probs=128.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 001578 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI---LHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAY 520 (1050)
Q Consensus 447 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~ 520 (1050)
..+..++..|..+...|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 356667778888888888888888888888888876543 47788888888888888888888888877763 567
Q ss_pred HHHHHHHHHcCC------------------HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 001578 521 TYLGLALSSIGE------------------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (1050)
Q Consensus 521 ~~la~~~~~~g~------------------~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 582 (1050)
+.+|.++...+. ..+|+..|++.++..|+...+ .+|...+..+ ..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l---~~ 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFL---KD 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHH---HH
Confidence 777777644431 245667777777777776321 1111111111 00
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 001578 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYDAA 645 (1050)
Q Consensus 583 ~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~a 645 (1050)
....--...|..|.+.|.|..|+.-++.+++..|+. .++++.++.+|..+|..++|.......
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 111223467888899999999999999999988775 578899999999999999988766543
No 139
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.87 E-value=4.7e-07 Score=96.19 Aligned_cols=302 Identities=14% Similarity=0.144 Sum_probs=221.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--cHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQS----NPS--AGEA 451 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~ 451 (1050)
+.-....|.-++...++++|+..+.+.+..-.+. ...+-.+..+...+|.|++++.+---.+.. +.. ..++
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888999999999999999998754333 234455667788888888877765444433 222 2467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 001578 452 WKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAY 520 (1050)
Q Consensus 452 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~ 520 (1050)
+.+++..+....++.+++.+-.-.+.+.... ......+|..+..++.++++++.|+.+++...++ ..++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 8899999999999999999988888764333 3567779999999999999999999999885443 2567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCC
Q 001578 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNF----------LEAWGHLTQFYQDLANSEKALECLQQVLYID------KRF 584 (1050)
Q Consensus 521 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~------p~~ 584 (1050)
..+|..+....++++|.-+..+|.++.... .-+++.++..+..+|..-.|.++.+++.++. +-.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 889999999999999999999998875432 3567889999999999999999999987653 223
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHH-----HHHHHHHHHHhcCCCH
Q 001578 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYRE-----AIKDYDAALDLELDSM 653 (1050)
Q Consensus 585 ~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~------~~~~~~~la~~~~~~g~~~e-----A~~~~~~al~l~p~~~ 653 (1050)
.....-+|.+|...|+.+.|..-|+.|...-.. ..+++...|.++....-..+ |++.-.+++++...-.
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG 325 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIG 325 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhh
Confidence 456778899999999999999999999865321 24567777777776655555 8888888888764332
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 001578 654 EKFVLQCLAFYQKEIALYTASKINSEFCWF 683 (1050)
Q Consensus 654 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l 683 (1050)
............+..|...|.-++--..+
T Consensus 326 -~K~~vlK~hcrla~iYrs~gl~d~~~~h~ 354 (518)
T KOG1941|consen 326 -AKLSVLKLHCRLASIYRSKGLQDELRAHV 354 (518)
T ss_pred -hhHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 22222233444444444444333333333
No 140
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.86 E-value=1.9e-07 Score=97.67 Aligned_cols=175 Identities=22% Similarity=0.159 Sum_probs=108.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 001578 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYT 521 (1050)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~ 521 (1050)
.+..++..|..++..|++.+|+..|++++...|.. +.+.+.+|.+++..|++++|+..+++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 35567777777777777777777777777776654 55777777777777777777777777777777653 4666
Q ss_pred HHHHHHHHcCC-----------HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 001578 522 YLGLALSSIGE-----------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590 (1050)
Q Consensus 522 ~la~~~~~~g~-----------~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 590 (1050)
.+|.+++.... ..+|+..|+..+...|++..+- +|...+..+-. ....--+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHHH
Confidence 77776655421 2355556666666665542111 11111110000 00122345
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCHHHHH
Q 001578 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIGEYREAI 639 (1050)
Q Consensus 591 la~~~~~~g~~~eAi~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~ 639 (1050)
+|..|.+.|.+..|+..++.+++..|+.. +++..++.+|..+|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 78888889999999999999998888874 57888888888888887544
No 141
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.83 E-value=6.6e-09 Score=92.01 Aligned_cols=80 Identities=30% Similarity=0.352 Sum_probs=72.2
Q ss_pred cCCHHHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 001578 49 LRNWSKAIRILDSLLAQSY---EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV 125 (1050)
Q Consensus 49 ~~~~~~Ai~~y~~ai~~~~---~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~ 125 (1050)
+|+|+.|+..|+++++..| +...++++|.||+++|+|++|+..+++ ++.+|.+...++.+|.|++.+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6899999999999999996 345577899999999999999999999 889999999999999999999999999999
Q ss_pred HHHH
Q 001578 126 WEKG 129 (1050)
Q Consensus 126 ~~~a 129 (1050)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 142
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=3.8e-07 Score=90.62 Aligned_cols=197 Identities=18% Similarity=0.126 Sum_probs=126.7
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001578 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (1050)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (1050)
..+..++.+|..|-..|-..-|..-|.+++.+.|.-+.++..+|..+...|+++.|.+.|+..++++|.+..+..+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 34667888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001578 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (1050)
Q Consensus 459 ~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 538 (1050)
++--|++.-|.+.+.+-.+.+|+++---..+-.. ...-++.+|...+.+-.+...+....++..+ +.+|+..+ ..
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~---~yLgkiS~-e~ 217 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVE---FYLGKISE-ET 217 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhhHHHHH---HHHhhccH-HH
Confidence 8888888888888888888888776422222111 1223455555444332222222222222211 12222221 12
Q ss_pred HHHHHHHhCcCc-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 001578 539 AHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (1050)
Q Consensus 539 ~l~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 580 (1050)
.++++.+...++ .+.++.+|..+...|+.++|...|+-++..
T Consensus 218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 233333222222 345666666666666666666666666554
No 143
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.80 E-value=4.3e-09 Score=110.41 Aligned_cols=237 Identities=16% Similarity=0.127 Sum_probs=173.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001578 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (1050)
Q Consensus 384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (1050)
+-..|..|+.+|.|++|+.+|.+++..+|.++-.+.++|.+|+++..|..|...+..|+.++.....+|.+.+.+...+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (1050)
Q Consensus 464 ~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 543 (1050)
+..+|.+.++.++.+.|++.++...++.+.. ..++ +-+.+..|.. -+|.+-..++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~----~I~~KsT~G~-----------------~~A~Q~~~Q~ 234 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRER----KIATKSTPGF-----------------TPARQGMIQI 234 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhh----hHHhhcCCCC-----------------Cccccchhhh
Confidence 9999999999999999987766554444322 1111 1111112221 1122222222
Q ss_pred HHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Q 001578 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (1050)
Q Consensus 544 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~ 623 (1050)
+.+ -.-|..+...|.++.++.++.+-+....++.....+ +..+.+.-++++|+....+++..+|......-
T Consensus 235 l~~--------K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s 305 (536)
T KOG4648|consen 235 LPI--------KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTS 305 (536)
T ss_pred ccc--------cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccC
Confidence 211 112344556677777777776666555444443333 56666777788888888888888777655556
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578 624 LRASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 624 ~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
..+.+-.-+|...++...++.++.+.|.+..
T Consensus 306 ~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~ 336 (536)
T KOG4648|consen 306 GPPKAETIAKTSKEVKPTKQTAVKVAPAVET 336 (536)
T ss_pred CCchhHHHHhhhhhcCcchhheeeecccccc
Confidence 6666666677888888999999999888765
No 144
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.80 E-value=1.6e-08 Score=85.77 Aligned_cols=67 Identities=30% Similarity=0.335 Sum_probs=62.4
Q ss_pred CcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcc
Q 001578 68 EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG-RKEEALSVWEKGYEHAL 134 (1050)
Q Consensus 68 ~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg-~~~~A~~~~~~al~~~~ 134 (1050)
++..+.++|.+++..|+|++|+..|++||+++|+++.+++.+|.++..+| ++++|+++|++++++.|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678899999999999999999999999999999999999999999999 79999999999977665
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.80 E-value=9.6e-08 Score=90.42 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q 001578 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLR 625 (1050)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~---~~~~~~l 625 (1050)
..++.+|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456777777778888888888888887777665 4577778888888888888888888888777764 5677888
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578 626 ASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 626 a~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
|.++..+|++++|..+++++++..|++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 88888888888888888888888887754
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.80 E-value=1.2e-07 Score=89.78 Aligned_cols=105 Identities=24% Similarity=0.322 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKR 454 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 454 (1050)
++.++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|+++.|+..|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3556677777777777777777777777766655 4566777777777777777777777777766654 456667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 001578 455 RGQARAALGESVEAIQDLSKALEFEPNSADI 485 (1050)
Q Consensus 455 la~~~~~~g~~~eA~~~l~kal~~~p~~~~~ 485 (1050)
+|.++...|++++|+..+++++...|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 7777777777777777777777776665543
No 147
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.80 E-value=1.5e-07 Score=111.28 Aligned_cols=124 Identities=13% Similarity=0.142 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc--------CChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHH
Q 001578 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL--------ANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHK 602 (1050)
Q Consensus 533 ~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~ 602 (1050)
...|+.+|+++++++|+++.++..++.++... .+...+....++++.. ++..+.++..+|..+...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 44555555555555555555555555444332 2234556666666654 6777888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHH
Q 001578 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (1050)
Q Consensus 603 eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 657 (1050)
+|...+++|+.++| +..+|..+|.++...|++++|++.|++|+.++|.++..+.
T Consensus 438 ~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 438 EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYW 491 (517)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence 99999999999999 4889999999999999999999999999999999986443
No 148
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.79 E-value=1.2e-07 Score=104.70 Aligned_cols=172 Identities=19% Similarity=0.218 Sum_probs=113.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CC----HHHHHHH
Q 001578 524 GLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RF----SKAYHLR 591 (1050)
Q Consensus 524 a~~~~~~g~~~eA~~~l~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~----~~~~~~l 591 (1050)
|.+|...+++++|...|.++...... -...+...+.+|.+. ++++|+.+|++++.+.- +. +..+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34444444555555554444433211 123344444555444 66777777777766532 11 3567788
Q ss_pred HHHHHHC-CCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001578 592 GLLLHGL-GQHKKAIKDLSSGLGIDP--SN----IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664 (1050)
Q Consensus 592 a~~~~~~-g~~~eAi~~l~~al~~~p--~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~ 664 (1050)
|.+|... |++++|+++|++|+++.. +. ..++..+|.++..+|+|++|++.|+++....-++....+.....++
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 9999888 999999999999998732 12 3577889999999999999999999999865444332333334567
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhccCCCCHHH
Q 001578 665 QKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (1050)
Q Consensus 665 ~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~ 696 (1050)
..++++...++...|...|+.....+|+|..-
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 78889999999999999999999999987643
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.79 E-value=1.5e-07 Score=103.97 Aligned_cols=200 Identities=18% Similarity=0.127 Sum_probs=119.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHH
Q 001578 490 GIVNFKFKDFNAAVEDLSACVKLDK--EN----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHL 557 (1050)
Q Consensus 490 g~~~~~~g~~~~A~~~l~~al~~~p--~~----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~~l 557 (1050)
|..|...+++++|.+.|.++....- ++ ...+...+.++... ++++|+.+|++++.+.-.. ..++..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3444444444444444444433321 00 12333444444443 6677777777776653211 4567778
Q ss_pred HHHHHHc-CChHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-------HHHHH
Q 001578 558 TQFYQDL-ANSEKALECLQQVLYIDKR--F----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-------IECLY 623 (1050)
Q Consensus 558 a~~~~~~-g~~~~A~~~l~~al~~~p~--~----~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~-------~~~~~ 623 (1050)
|.+|... |++++|+++|++|++.... . ...+..+|.++...|+|++|+..|++.....-++ ...++
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 8888888 8999999999999876431 1 3467788999999999999999999988753221 23556
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC
Q 001578 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDID 690 (1050)
Q Consensus 624 ~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~ 690 (1050)
..+.|+...|+...|...+++....+|......-...+.-.-.+.--.....+..++..|+....+|
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 7788999999999999999999999986544332222222222222223445666666665444433
No 150
>PRK11906 transcriptional regulator; Provisional
Probab=98.78 E-value=3e-07 Score=103.12 Aligned_cols=160 Identities=13% Similarity=0.086 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC
Q 001578 383 FRLSRGIAQVNEG---KYASAISIFDQIL---KEDPMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSNPS 447 (1050)
Q Consensus 383 ~~~~~a~~~~~~g---~~~~Ai~~~~~al---~~~p~~~~a~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 447 (1050)
.++.+|...+..+ ..+.|+.+|.+++ +.+|+.+.++..+|.|++.. .+..+|....++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4477787776665 4568888899999 88899999999998888764 2345667777777777777
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-
Q 001578 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA- 526 (1050)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~- 526 (1050)
++.++..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|++.++++++++|....+-...-.+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~ 416 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD 416 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777777777777777777777777655443333333
Q ss_pred HHHcCCHHHHHHHHHH
Q 001578 527 LSSIGEYKKAEEAHLK 542 (1050)
Q Consensus 527 ~~~~g~~~eA~~~l~~ 542 (1050)
.+.....++|+..|-+
T Consensus 417 ~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 417 MYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHcCCchhhhHHHHhh
Confidence 3444455666665544
No 151
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.77 E-value=3.5e-07 Score=108.24 Aligned_cols=137 Identities=18% Similarity=0.158 Sum_probs=82.3
Q ss_pred cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHh--CC
Q 001578 380 SVDFRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQRE--------LEAAISDFTEAIQS--NP 446 (1050)
Q Consensus 380 ~~~~~~~~a~~~~~~g~---~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~--------~~~A~~~~~~al~~--~p 446 (1050)
++..++.+|..++..++ +..|+.+|+++++.+|+++.++..++.++..... ...+.....+++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 34455777877776655 7788888888888888888888887777655321 23333344443332 44
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001578 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (1050)
Q Consensus 447 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~ 517 (1050)
.++.++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|++.|++|+.++|.++
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 4455555555555555555555555555555555 345555555555555555555555555555555544
No 152
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=9.5e-07 Score=87.82 Aligned_cols=196 Identities=22% Similarity=0.211 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001578 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (1050)
Q Consensus 449 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 528 (1050)
+..++..|..|-..|-..-|...|.+++.+.|+.+.+++.+|..+...|+|+.|.+.|...++++|.+..+..+.|..++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 34556667777777778888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 001578 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (1050)
Q Consensus 529 ~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l 608 (1050)
.-|++.-|.+-+.+-.+.+|+++---..+-.. ...-+..+|...+.+-.+...+....+...+.. +|+..+ ...+
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y---LgkiS~-e~l~ 219 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY---LGKISE-ETLM 219 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH---HhhccH-HHHH
Confidence 88888888888888888888775322221111 123345555544433322222222333322222 222211 1233
Q ss_pred HHHHhcCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578 609 SSGLGIDPSN-------IECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (1050)
Q Consensus 609 ~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 649 (1050)
+++.+-..++ .++++.+|..+...|+.++|...|+-++..+
T Consensus 220 ~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 220 ERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3333333332 3678889999999999999999998888754
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.76 E-value=2.5e-07 Score=94.19 Aligned_cols=121 Identities=22% Similarity=0.271 Sum_probs=82.7
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001578 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452 (1050)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 452 (1050)
..+..+..++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+.+++...|.+...+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 344556677788888888888888888888887765543 35677777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001578 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (1050)
Q Consensus 453 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~ 516 (1050)
..+|.++...|+...+...+..++. .+++|++++++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 7777777777776665555444432 2455666666666666654
No 154
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.75 E-value=3.7e-07 Score=93.00 Aligned_cols=90 Identities=19% Similarity=0.259 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 001578 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (1050)
Q Consensus 483 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~ 559 (1050)
+..++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+.+++...|.+...+..+|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3344555555555555555555555555443332 2344444555555555555555555555544444444444444
Q ss_pred HHHHcCChHHHHH
Q 001578 560 FYQDLANSEKALE 572 (1050)
Q Consensus 560 ~~~~~g~~~~A~~ 572 (1050)
++...|+...+..
T Consensus 115 ~~~~~g~~~~a~~ 127 (172)
T PRK02603 115 IYHKRGEKAEEAG 127 (172)
T ss_pred HHHHcCChHhHhh
Confidence 4444444444433
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.74 E-value=1e-07 Score=84.90 Aligned_cols=98 Identities=30% Similarity=0.486 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 001578 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632 (1050)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~ 632 (1050)
+++.+|.++...|++++|+..+++++...|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35566666677777777777777777776666666777777777777777777777777777777667777777777777
Q ss_pred cCHHHHHHHHHHHHHhcC
Q 001578 633 GEYREAIKDYDAALDLEL 650 (1050)
Q Consensus 633 g~~~eA~~~~~~al~l~p 650 (1050)
|++++|...+.++++..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777777777777776665
No 156
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.7e-07 Score=97.81 Aligned_cols=116 Identities=25% Similarity=0.315 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 001578 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLSACV 510 (1050)
Q Consensus 434 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~l~~al 510 (1050)
.+.-++.-+..+|++.+.|..+|.+|..+|++..|...|.+++++.|++++.+..+|.+++... ...++...+++++
T Consensus 141 l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 141 LIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 3333444444455555555555555555555555555555555555555555555554444332 2334455555555
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 001578 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549 (1050)
Q Consensus 511 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 549 (1050)
..+|.+..+...||..++..|+|.+|...++..+...|.
T Consensus 221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 555555555555555555555555555555555554443
No 157
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.73 E-value=3.8e-08 Score=83.43 Aligned_cols=67 Identities=30% Similarity=0.530 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcC
Q 001578 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG-EYREAIKDYDAALDLEL 650 (1050)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~l~p 650 (1050)
++..|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46677888888888888888888888888888888888888888888888 68888888888888876
No 158
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.73 E-value=4.4e-06 Score=102.40 Aligned_cols=234 Identities=12% Similarity=0.062 Sum_probs=180.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHHHcCCHHHHHH
Q 001578 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSA----GEAWKRRGQARAALGESVEAIQ 470 (1050)
Q Consensus 396 ~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~eA~~ 470 (1050)
+-.+..+-|++.+..+|+..-.|...-..+...++.++|.+.+++|+.. ++.. ..+|..+-.+...-|.-+.-.+
T Consensus 1439 ~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1439 RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 3344556777788888888888888888888888888898888888863 3332 2345555555555566777778
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Q 001578 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN- 549 (1050)
Q Consensus 471 ~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 549 (1050)
.|++|.+... ...++..|..+|...+++++|.++|+..++...+....|..+|..++.+.+-++|...+.+|++.-|.
T Consensus 1519 VFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1519 VFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 8888887653 45577788888888888888888888888888877888888888888888888888888888888887
Q ss_pred -cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Q 001578 550 -FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID--PSNIECLYLRA 626 (1050)
Q Consensus 550 -~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~--p~~~~~~~~la 626 (1050)
+.......|.+-++.|+.+.+..+|+..+..+|...+.|.-+...-.+.|+.+.+...|++++.+. |.....+|..=
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 677777888888888888888888888888888888888888888888888888888888888764 33334444433
Q ss_pred HHHH
Q 001578 627 SCYH 630 (1050)
Q Consensus 627 ~~~~ 630 (1050)
.-|.
T Consensus 1678 LeyE 1681 (1710)
T KOG1070|consen 1678 LEYE 1681 (1710)
T ss_pred HHHH
Confidence 3333
No 159
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=7.7e-06 Score=84.42 Aligned_cols=256 Identities=15% Similarity=0.047 Sum_probs=191.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 001578 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467 (1050)
Q Consensus 388 a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 467 (1050)
.+-++..|+|..++..-.+.-... ........+.+.|..+|++...+......- .....+...++.+...-++.++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 445677899999998877765443 677788889999999999876655443322 1223445555665555566555
Q ss_pred HHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578 468 AIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (1050)
Q Consensus 468 A~~~l~kal~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 545 (1050)
-+.-+.+.+.... .+......-|.++...+++++|+...... .+.++...--.++.+..+.+-|...++++.+
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5555544443322 23345666788899999999999988763 3445666667788899999999999999988
Q ss_pred hCcCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Q 001578 546 LDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621 (1050)
Q Consensus 546 ~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~ 621 (1050)
++.+ ..+..||.++.. .+++.+|.-+|+..-+..|..+.....++.+...+|+|++|...++.++..+++++++
T Consensus 166 ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 166 IDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred cchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 8755 334445555443 3568899999999998888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHH-HHHHHHHhcCCCHH
Q 001578 622 LYLRASCYHAIGEYREAIK-DYDAALDLELDSME 654 (1050)
Q Consensus 622 ~~~la~~~~~~g~~~eA~~-~~~~al~l~p~~~~ 654 (1050)
+.++..+-...|...++.. .+.+....+|+++-
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 9999999999998877765 55666677787763
No 160
>PRK11906 transcriptional regulator; Provisional
Probab=98.71 E-value=6.6e-07 Score=100.47 Aligned_cols=158 Identities=12% Similarity=0.032 Sum_probs=116.2
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCH
Q 001578 419 IGRGTARAFQRE---LEAAISDFTEAI---QSNPSAGEAWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSA 483 (1050)
Q Consensus 419 ~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~eA~~~l~kal~~~p~~~ 483 (1050)
+.+|...+..+. .+.|+.+|.+++ +++|+...+|..+|.++... .+..+|.+..+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 666666665553 467888899999 88999999998888888754 234567777888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-HH
Q 001578 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQ 562 (1050)
Q Consensus 484 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~-~~ 562 (1050)
.++..+|.++...++++.|+..|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+ .+
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888764433322222 23
Q ss_pred HcCChHHHHHHHHH
Q 001578 563 DLANSEKALECLQQ 576 (1050)
Q Consensus 563 ~~g~~~~A~~~l~~ 576 (1050)
.....++|+..|-+
T Consensus 419 ~~~~~~~~~~~~~~ 432 (458)
T PRK11906 419 VPNPLKNNIKLYYK 432 (458)
T ss_pred cCCchhhhHHHHhh
Confidence 34555666666544
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.1e-07 Score=97.40 Aligned_cols=122 Identities=23% Similarity=0.203 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Q 001578 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHKKAIKDLS 609 (1050)
Q Consensus 533 ~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~eAi~~l~ 609 (1050)
.+..+.-++.-+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..+|.+++.+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5566677778888889999999999999999999999999999999999999988888888876543 4567888999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
+++..+|.+..+++.||..+++.|+|.+|...++..++..|.+..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999988876644
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.69 E-value=3e-07 Score=93.27 Aligned_cols=77 Identities=22% Similarity=0.210 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001578 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (1050)
Q Consensus 520 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 596 (1050)
++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+.++++++.+.|.....+..+|.++.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3444444444444444444444444443321 2244444444444444444444444444444444444444444444
No 163
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.69 E-value=7.7e-07 Score=87.82 Aligned_cols=128 Identities=18% Similarity=0.147 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 001578 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRR 455 (1050)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 455 (1050)
...+..+...+..++...+...++.++..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ..+...+
T Consensus 12 ~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 12 SALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344555555667888888888888888888887 4567778888888888888888888888877554 3467778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510 (1050)
Q Consensus 456 a~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al 510 (1050)
|.++...|++++|+..++.. .-.+..+.++..+|.++...|++++|+..|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88888888888888888652 3333456677778888888888888888887764
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.68 E-value=2.3e-07 Score=82.61 Aligned_cols=97 Identities=28% Similarity=0.414 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001578 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (1050)
Q Consensus 384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (1050)
++.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44556666666666666666666666666665566666666666666666666666666666665555666666666666
Q ss_pred CHHHHHHHHHHHHhhCC
Q 001578 464 ESVEAIQDLSKALEFEP 480 (1050)
Q Consensus 464 ~~~eA~~~l~kal~~~p 480 (1050)
++++|...+.+++...|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666666555544
No 165
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.67 E-value=2.4e-06 Score=91.02 Aligned_cols=236 Identities=17% Similarity=0.190 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHH
Q 001578 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPN------SADIL 486 (1050)
Q Consensus 416 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~------~~~~~ 486 (1050)
.-....|.-++...++++|+....+.+..-.+. ...+-.+..+...+|.|++++.+--..+...-+ .-+++
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888899999999998888764443 234555677888889998887765544443221 14578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHH
Q 001578 487 HERGIVNFKFKDFNAAVEDLSACVKLDKEN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWG 555 (1050)
Q Consensus 487 ~~lg~~~~~~g~~~~A~~~l~~al~~~p~~-----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~ 555 (1050)
.+++..+....++.+++.+-+..+.+.... ......+|.++..++.++++++.|+.|+.+..++ ..++.
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 889999999999999999998888774333 2567779999999999999999999999886544 35678
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCC----C------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCCH
Q 001578 556 HLTQFYQDLANSEKALECLQQVLYIDKR----F------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID------PSNI 619 (1050)
Q Consensus 556 ~la~~~~~~g~~~~A~~~l~~al~~~p~----~------~~~~~~la~~~~~~g~~~eAi~~l~~al~~~------p~~~ 619 (1050)
.+|.+|....++++|+-+..++.++... + ..+++.++..+..+|+.-.|.++.+++.++. +-..
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~a 246 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQA 246 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999999999999999877432 1 3467788999999999999999999997763 2234
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (1050)
Q Consensus 620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 651 (1050)
....-+|.+|...|+.+.|..-|+.|......
T Consensus 247 rc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 247 RCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 56777999999999999999999999877543
No 166
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.65 E-value=1.1e-06 Score=86.69 Aligned_cols=117 Identities=22% Similarity=0.142 Sum_probs=80.0
Q ss_pred HcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHH
Q 001578 529 SIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHK 602 (1050)
Q Consensus 529 ~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~ 602 (1050)
..++...+...++..+..+|+. ..+.+.+|.++...|++++|...|+.++...|+. ..+...+|.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4666667766777777777766 4556667777777777777777777777766443 345666777777777777
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 001578 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646 (1050)
Q Consensus 603 eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 646 (1050)
+|+..++. +.-.+-.+.++..+|.+|...|++++|+..|++|+
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77777755 22333445667777777777777777777777664
No 167
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.65 E-value=7e-05 Score=80.94 Aligned_cols=261 Identities=18% Similarity=0.106 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (1050)
+-+++.-+...+-.|+++.|.+-|+..+. +|.. .-.+..+-......|..+.|+.+-+++....|.-+.++...-...
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r 198 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 55566667777777777777777776653 2221 111222222234567777777777777777777777776666667
Q ss_pred HHcCCHHHHHHHHHHHHhh---CCCCHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001578 460 AALGESVEAIQDLSKALEF---EPNSAD---ILHERGIVN-FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (1050)
Q Consensus 460 ~~~g~~~eA~~~l~kal~~---~p~~~~---~~~~lg~~~-~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 532 (1050)
...|+++.|+++.+..... .++..+ +-..-+... .-.-+...|.....+++++.|+...+-..-+..++..|+
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~ 278 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGN 278 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc
Confidence 7777777777777655432 221111 111111111 122356677777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHH---HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 001578 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV---LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (1050)
Q Consensus 533 ~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a---l~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~ 609 (1050)
..++-..++.+.+..|. +. ++.+|....--+.++.-++++ ..+.|++.+.....+...+..|++..|..--+
T Consensus 279 ~rKg~~ilE~aWK~ePH-P~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 279 LRKGSKILETAWKAEPH-PD----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred hhhhhhHHHHHHhcCCC-hH----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 77777777777776664 22 223333333333344444433 34456777777777777777777777777777
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHh
Q 001578 610 SGLGIDPSNIECLYLRASCYHAI-GEYREAIKDYDAALDL 648 (1050)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~l 648 (1050)
.+....|. ..++..++.+-... |+-.++...+-+++.-
T Consensus 354 aa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 354 AAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 77777665 45566666666555 7777777777777653
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.64 E-value=5.4e-07 Score=91.40 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHH
Q 001578 395 GKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAI 469 (1050)
Q Consensus 395 g~~~~Ai~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~ 469 (1050)
+.|..+...+...++..+.. ..+++.+|.++...|++++|+..|.+++.+.|+. +.++.++|.++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555554444433 4555667777777777777777777776665542 346667777777777777777
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHH
Q 001578 470 QDLSKALEFEPNSADILHERGIVNF 494 (1050)
Q Consensus 470 ~~l~kal~~~p~~~~~~~~lg~~~~ 494 (1050)
.++++++.+.|.....+..+|.++.
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 7777777777766666666666666
No 169
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.64 E-value=7.6e-06 Score=100.39 Aligned_cols=219 Identities=13% Similarity=0.088 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 001578 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNS----ADILHERGIVNFKFKDFNAAVEDL 506 (1050)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-~p~~----~~~~~~lg~~~~~~g~~~~A~~~l 506 (1050)
.+..+.|++.+..+|+..-.|..+...+.+.++.++|.+..++|+.. ++.. ..+|..+-++...-|.-+.-.+.|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 34567889999999999999999999999999999999999999974 4433 235555555555667777788888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--C
Q 001578 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR--F 584 (1050)
Q Consensus 507 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~ 584 (1050)
++|.+... ....+..|..+|...+.+++|.++|+..++...+....|..+|..++.+.+-+.|...+.+|+..-|. +
T Consensus 1521 eRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1521 ERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 88887642 34678889999999999999999999999999988999999999999999999999999999999997 7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (1050)
Q Consensus 585 ~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 651 (1050)
.+.....|.+.++.|+.+.+...|+..+..+|...+.|.-+...-.+.|+.+.+...|++++.+.-.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 7888889999999999999999999999999999999999999999999999999999999988643
No 170
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=5.4e-07 Score=98.66 Aligned_cols=148 Identities=27% Similarity=0.274 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Q 001578 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563 (1050)
Q Consensus 484 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~ 563 (1050)
......|..|++.|+|..|...|++++..-.... .-+.++.... .++ -..++.+++.++.+
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~--~~~-----k~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKA--EAL-----KLACHLNLAACYLK 269 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHH--HHH-----HHHHhhHHHHHHHh
Confidence 3445677788888888888888887766432110 0000111100 001 13467788888888
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH-HHHH
Q 001578 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA-IKDY 642 (1050)
Q Consensus 564 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA-~~~~ 642 (1050)
+++|.+|+...+++|..+|++..+++..|.++..+|+|+.|+..|+++++++|+|..+...+..+-.+..++.+. .+.|
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888777776665554 5667
Q ss_pred HHHHHhcC
Q 001578 643 DAALDLEL 650 (1050)
Q Consensus 643 ~~al~l~p 650 (1050)
.+.+..-+
T Consensus 350 ~~mF~k~~ 357 (397)
T KOG0543|consen 350 ANMFAKLA 357 (397)
T ss_pred HHHhhccc
Confidence 77666544
No 171
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.61 E-value=0.00014 Score=78.82 Aligned_cols=297 Identities=16% Similarity=0.099 Sum_probs=219.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHH
Q 001578 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARA 460 (1050)
Q Consensus 384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~ 460 (1050)
-+..|.+....|+-..|.+.-.+.-++-..+ +-++..-+....-.|+++.|.+-|+..+. +|+. .-.+..+-.-..
T Consensus 87 ALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAq 165 (531)
T COG3898 87 ALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQ 165 (531)
T ss_pred HHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHH
Confidence 3556777778899999999988876543333 45666678888889999999999998764 3332 222333334445
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCH---HHHHHHHHH-HHHcCCH
Q 001578 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL---DKENK---SAYTYLGLA-LSSIGEY 533 (1050)
Q Consensus 461 ~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~---~p~~~---~~~~~la~~-~~~~g~~ 533 (1050)
..|..+.|..+-+++....|.-+.+....-...+..|+++.|+++.+..... .++.. .+...-+.. -....+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 7899999999999999999999988888888889999999999999876553 23221 111112222 2223568
Q ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH--
Q 001578 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG-- 611 (1050)
Q Consensus 534 ~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~a-- 611 (1050)
..|...-.+++++.|+...+-..-+..+++.|+..++-.+++.+.+..|. +. ++.+|....--+.++.-++++
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~----ia~lY~~ar~gdta~dRlkRa~~ 320 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PD----IALLYVRARSGDTALDRLKRAKK 320 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hH----HHHHHHHhcCCCcHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999998885 33 334444444444555555544
Q ss_pred -HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHhhc-
Q 001578 612 -LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALY-TASKINSEFCWFDIDGD- 688 (1050)
Q Consensus 612 -l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~l~~a~~- 688 (1050)
..+.|++.+.....+..-...|++..|..--+.+....|... .|..++.... ..|+-.+...++.++..
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres--------~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES--------AYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh--------HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 456899999999999999999999999999999999998753 2223333332 34777888888877765
Q ss_pred -cCCCCH
Q 001578 689 -IDPLFK 694 (1050)
Q Consensus 689 -l~p~~~ 694 (1050)
.+|.|.
T Consensus 393 PrdPaW~ 399 (531)
T COG3898 393 PRDPAWT 399 (531)
T ss_pred CCCCccc
Confidence 344443
No 172
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.61 E-value=6.1e-05 Score=89.49 Aligned_cols=226 Identities=15% Similarity=0.043 Sum_probs=134.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001578 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470 (1050)
Q Consensus 391 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 470 (1050)
....+++.+|+....++++..|+...+....|..+.++|+.++|..+++..-...+++...+..+-.+|..++++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 34556777777777777777777777777777777777777777766666555566666666677777777777777777
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHH---------HHHHHH
Q 001578 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA-YTYLGLALSSIGEYK---------KAEEAH 540 (1050)
Q Consensus 471 ~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~-~~~la~~~~~~g~~~---------eA~~~l 540 (1050)
+|++++..+|. .+.+..+-.+|.+.+.|.+-.+.--+..+..|.++.. |.-+..++......+ -|....
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 77777777776 6666666666666666665555544555556665533 233333333322222 233444
Q ss_pred HHHHHhC-cCc--HHHHHHHHHHHHHcCChHHHHHHHHHHH-hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 001578 541 LKAIQLD-RNF--LEAWGHLTQFYQDLANSEKALECLQQVL-YID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (1050)
Q Consensus 541 ~~al~~~-p~~--~~~~~~la~~~~~~g~~~~A~~~l~~al-~~~-p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~ 615 (1050)
++.++.. +-. .++. ..-.++..+|++++|.+.+..-+ +.. +.+...-......+...+++.+-.+...+++...
T Consensus 178 ~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 4444444 111 1221 22234556677777777773322 222 2333333444556666777777777777777776
Q ss_pred CCC
Q 001578 616 PSN 618 (1050)
Q Consensus 616 p~~ 618 (1050)
+++
T Consensus 257 ~Dd 259 (932)
T KOG2053|consen 257 NDD 259 (932)
T ss_pred Ccc
Confidence 665
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.60 E-value=1.7e-07 Score=78.35 Aligned_cols=64 Identities=31% Similarity=0.408 Sum_probs=51.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH
Q 001578 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (1050)
Q Consensus 590 ~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 653 (1050)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5677888888888888888888888888888888888888888888888888888888888764
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.59 E-value=1.6e-07 Score=78.59 Aligned_cols=65 Identities=26% Similarity=0.281 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 001578 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS 137 (1050)
Q Consensus 73 ~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~ 137 (1050)
+.+|..+++.|++++|+..++++++.+|++..+++.+|.++..+|++++|+..|++++++.|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35789999999999999999999999999999999999999999999999999999988888764
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.58 E-value=1.3e-07 Score=83.71 Aligned_cols=81 Identities=32% Similarity=0.423 Sum_probs=48.3
Q ss_pred cCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 001578 564 LANSEKALECLQQVLYIDKR--FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD 641 (1050)
Q Consensus 564 ~g~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 641 (1050)
.|+++.|+.+++++++..|. +...++.+|.+++..|++++|+..+++ ...++.+....+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666666666666663 234455566666666666666666666 555555556666666666666666666666
Q ss_pred HHHH
Q 001578 642 YDAA 645 (1050)
Q Consensus 642 ~~~a 645 (1050)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 6553
No 176
>PRK15331 chaperone protein SicA; Provisional
Probab=98.57 E-value=9e-07 Score=86.05 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=101.2
Q ss_pred HHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 001578 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450 (1050)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 450 (1050)
..+....+...+..+..|..++..|++++|..+|+-+.-.+|.+++.+..+|.++..+++|++|+..|..+..++++++.
T Consensus 27 k~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~ 106 (165)
T PRK15331 27 KDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR 106 (165)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence 34455566678889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001578 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483 (1050)
Q Consensus 451 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 483 (1050)
..+..|.|+..+|+...|+.+|+.++. .|.+.
T Consensus 107 p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 107 PVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred ccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 999999999999999999999999998 45443
No 177
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=3.6e-05 Score=89.62 Aligned_cols=281 Identities=16% Similarity=0.073 Sum_probs=161.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001578 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (1050)
Q Consensus 384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (1050)
-...|......|-.++|..+|++.-.. -.+-..|...|.+++|.+..+.-=.+ .-...|++.|..+...+
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhc
Confidence 344566677788888888888887543 24556677778888877665431111 12456788888888888
Q ss_pred CHHHHHHHHHHH----------HhhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001578 464 ESVEAIQDLSKA----------LEFEP----------NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523 (1050)
Q Consensus 464 ~~~eA~~~l~ka----------l~~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l 523 (1050)
+.+.|+++|+++ +..+| .+..+|...|..+...|+.+.|+.+|..+-. |+.+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~ 944 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSM 944 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhh
Confidence 888888888865 22233 2345677778888888888888888877633 2333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCC-------------
Q 001578 524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI------DKRF------------- 584 (1050)
Q Consensus 524 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~------~p~~------------- 584 (1050)
..+..-+|+.++|-...++ ..+..+-+.+|+.|...|++.+|+..|.+|-.. ...+
T Consensus 945 VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s 1019 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMS 1019 (1416)
T ss_pred eeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 3344444444444332222 233344455555555555555555555444211 1100
Q ss_pred -HHHHHHHH--------------HHHHHCCCHHHHHHHHHH----------HHhcCC-CCHHHHHHHHHHHHHccCHHHH
Q 001578 585 -SKAYHLRG--------------LLLHGLGQHKKAIKDLSS----------GLGIDP-SNIECLYLRASCYHAIGEYREA 638 (1050)
Q Consensus 585 -~~~~~~la--------------~~~~~~g~~~eAi~~l~~----------al~~~p-~~~~~~~~la~~~~~~g~~~eA 638 (1050)
+.-....| .+|.+.|.+.+|++..=+ +-.++| .++..+..-+..+....+|++|
T Consensus 1020 ~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekA 1099 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKA 1099 (1416)
T ss_pred CchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHH
Confidence 00011112 233444444444432111 112244 3577778888888888999998
Q ss_pred HHHHH------HHHHhcCC-------------------CHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 001578 639 IKDYD------AALDLELD-------------------SMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGD 688 (1050)
Q Consensus 639 ~~~~~------~al~l~p~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~ 688 (1050)
...+- .|+.+..+ .+. -...-..+-+.|.++.++|.|..|-+-|..|++
T Consensus 1100 V~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~-e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1100 VNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPN-EQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCcc-HHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence 87654 44443211 111 112234566678888888888888887777654
No 178
>PRK15331 chaperone protein SicA; Provisional
Probab=98.53 E-value=1.1e-06 Score=85.52 Aligned_cols=109 Identities=6% Similarity=0.027 Sum_probs=88.5
Q ss_pred HHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Q 001578 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (1050)
Q Consensus 544 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~ 623 (1050)
..+.++..+..+..|.-++..|++++|...|+-....+|.+++.+..+|.++..+++|++|+..|..+..++++++...+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 33455556777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhcCCCH
Q 001578 624 LRASCYHAIGEYREAIKDYDAALDLELDSM 653 (1050)
Q Consensus 624 ~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 653 (1050)
..|.||..+|+.+.|+.+|+.+++ .|.+.
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 888888888888888888888887 35443
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.50 E-value=3.3e-06 Score=91.12 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=92.8
Q ss_pred cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 001578 380 SVDFRLSRGIAQ-VNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW 452 (1050)
Q Consensus 380 ~~~~~~~~a~~~-~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 452 (1050)
+....+..|..+ +..|+|++|+..|+..++.+|++ +.+++.+|.+|+..|++++|+..|.+++...|++ ++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 356667777776 56799999999999999999988 5899999999999999999999999999988874 7788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 001578 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADI 485 (1050)
Q Consensus 453 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~ 485 (1050)
+.+|.++..+|++++|...|+++++..|+...+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 889999999999999999999999999977643
No 180
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=4.7e-05 Score=78.77 Aligned_cols=230 Identities=15% Similarity=0.047 Sum_probs=168.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 001578 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501 (1050)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~ 501 (1050)
.+-++..|+|..++..-.+.-... ...+....+.+.|..+|++...+.-....- .....+...++.+...-++.++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 345667799999888777654433 667777888999999998876555433322 1123455566666666666666
Q ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 001578 502 AVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY 579 (1050)
Q Consensus 502 A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 579 (1050)
-+.-+.+.+.... .+......-|.++...|++++|+...... .+.++...-..++.++.+.+-|...++++.+
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5555555444332 23345566678899999999999888773 3455666666788899999999999999988
Q ss_pred hCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH
Q 001578 580 IDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (1050)
Q Consensus 580 ~~p~~~~~~~~la~~~~~----~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~ 655 (1050)
++.+ ..+..+|..+.. .+++.+|.-+|+..-+..|..+..+...+.|...+|++++|...++.++..++++++.
T Consensus 166 ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 166 IDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred cchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 8665 444445555443 4578999999999999888889999999999999999999999999999999999987
Q ss_pred HHHHHHH
Q 001578 656 FVLQCLA 662 (1050)
Q Consensus 656 ~~~~~~~ 662 (1050)
..++..+
T Consensus 244 L~Nliv~ 250 (299)
T KOG3081|consen 244 LANLIVL 250 (299)
T ss_pred HHHHHHH
Confidence 6655443
No 181
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.45 E-value=4.1e-05 Score=79.81 Aligned_cols=190 Identities=15% Similarity=0.153 Sum_probs=131.0
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---H
Q 001578 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE---A 451 (1050)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~ 451 (1050)
...+..++..|...++.|++++|+..|+.+...+|.. ..+.+.++.++++.+++++|+..+++-+.+.|.++. +
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 4458899999999999999999999999999988875 578899999999999999999999999999988744 6
Q ss_pred HHHHHHHHHHcC--------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001578 452 WKRRGQARAALG--------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523 (1050)
Q Consensus 452 ~~~la~~~~~~g--------~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l 523 (1050)
++..|.++...= -..+|+..++..+...|++.-+-.....+ ..++..+ ..--..+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~L------A~~Em~I 173 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDAL------AGHEMAI 173 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHHH------HHHHHHH
Confidence 677777765431 24567777888888888663221111000 0000000 1112345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 001578 524 GLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (1050)
Q Consensus 524 a~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 584 (1050)
|..|.+.|.+..|+..++.+++..|+. .+++..+..+|..+|-.++|...-.-.-...|++
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 666777777777777777777766554 4566666777777777777766544433334443
No 182
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.45 E-value=1.1e-07 Score=101.16 Aligned_cols=107 Identities=21% Similarity=0.300 Sum_probs=98.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHH
Q 001578 29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107 (1050)
Q Consensus 29 ~~~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~ 107 (1050)
.++.+..+...|.+...++..|++++||+.|+++|+++ +....|.+|+.+++++++...|+++|..|++++|+..+.|-
T Consensus 107 Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~yk 186 (377)
T KOG1308|consen 107 TEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYK 186 (377)
T ss_pred hHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccc
Confidence 45567778888899999999999999999999999999 66677999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 001578 108 LKGCAFSALGRKEEALSVWEKGYEHALH 135 (1050)
Q Consensus 108 ~~g~~~~~lg~~~~A~~~~~~al~~~~~ 135 (1050)
.+|.+...+|++++|..+|..+.++.-+
T Consensus 187 frg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 187 FRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 9999999999999999999999766533
No 183
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.44 E-value=5.9e-06 Score=89.22 Aligned_cols=102 Identities=17% Similarity=0.058 Sum_probs=54.9
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHH
Q 001578 484 DILHERGIVN-FKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGH 556 (1050)
Q Consensus 484 ~~~~~lg~~~-~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~ 556 (1050)
...+..|..+ ...|+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|++++...|++ +++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444433 33455555555555555555554 3455555555555555555555555555555443 455555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 001578 557 LTQFYQDLANSEKALECLQQVLYIDKRFS 585 (1050)
Q Consensus 557 la~~~~~~g~~~~A~~~l~~al~~~p~~~ 585 (1050)
+|.++...|++++|...|+++++..|+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 55555555555555555555555555543
No 184
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.42 E-value=5e-06 Score=94.24 Aligned_cols=119 Identities=22% Similarity=0.267 Sum_probs=103.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Q 001578 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (1050)
Q Consensus 523 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 602 (1050)
+-.++...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.+++...|.+...+...+..+...++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 344455567788888888888777764 55668888888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 001578 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (1050)
Q Consensus 603 eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 644 (1050)
.|+...+++..+.|++...|+.|+.+|..+|++++|+..+..
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999966553
No 185
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.41 E-value=5.6e-06 Score=93.86 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=79.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001578 423 TARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502 (1050)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A 502 (1050)
.++...++++.|+..+++..+.+|+ +...++.++...++..+|+..+.+++...|.+..++...+..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3444456677777777776666553 4445666666666777777777777777776777777777777777777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (1050)
Q Consensus 503 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 543 (1050)
+...++++...|.+...|+.|+.+|...|++++|+..++.+
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 77777777777777777777777777777777776665544
No 186
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=0.00011 Score=85.66 Aligned_cols=205 Identities=15% Similarity=0.045 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHH------------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 001578 383 FRLSRGIAQVNEGKYASAISI------------FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450 (1050)
Q Consensus 383 ~~~~~a~~~~~~g~~~~Ai~~------------~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 450 (1050)
.|-.+|.......+.+-|.-+ ++++.+ +|+ +.-...|.+...+|-.++|...|.+.-..
T Consensus 759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 445555555555555444433 333332 333 23334566777889999999999987553
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCC------
Q 001578 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC----------VKLDK------ 514 (1050)
Q Consensus 451 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~a----------l~~~p------ 514 (1050)
-.+-..|...|.+++|.+..+.-=.+ .--..|++.|..+...++.+.|+++|+++ +.-+|
T Consensus 830 --DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Y 905 (1416)
T KOG3617|consen 830 --DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQY 905 (1416)
T ss_pred --HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHH
Confidence 35667888899999998876543222 13457889999999999999999999884 22233
Q ss_pred ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 001578 515 ----ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590 (1050)
Q Consensus 515 ----~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 590 (1050)
.+...|...|..+...|+.+.|+.+|..|- -|+.+..+..-+|+.++|..+.++ ..+..+.+.
T Consensus 906 v~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYh 972 (1416)
T KOG3617|consen 906 VRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYH 972 (1416)
T ss_pred HHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeeccCchHHHHHHHh-----cccHHHHHH
Confidence 234567777888888999999999988763 366677777888999988876654 356678899
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHh
Q 001578 591 RGLLLHGLGQHKKAIKDLSSGLG 613 (1050)
Q Consensus 591 la~~~~~~g~~~eAi~~l~~al~ 613 (1050)
+|..|...|+..+|+..|.+|-.
T Consensus 973 laR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.39 E-value=7.3e-05 Score=73.01 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=120.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCcHHHHHHHHHHHHHcCChHHHHHH
Q 001578 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-LDRNFLEAWGHLTQFYQDLANSEKALEC 573 (1050)
Q Consensus 495 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~ 573 (1050)
+.=+++.+..-..+.+...|.. .-.+.+|..+...|++.||...|++++. +...++..+..+++..+..+++..|...
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 3334555555555556666654 3457788889999999999999998875 4567788888999999999999999999
Q ss_pred HHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 001578 574 LQQVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (1050)
Q Consensus 574 l~~al~~~p--~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 647 (1050)
+++..+.+| ..+.....+|..+..+|++.+|...|+.++...|+ +++....+..+.++|+..+|..-+....+
T Consensus 147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 999998887 34677888899999999999999999999998887 77888888999999988888776655544
No 188
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.39 E-value=6.3e-06 Score=75.45 Aligned_cols=107 Identities=20% Similarity=0.275 Sum_probs=91.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChh----HHHHHHHHHHH
Q 001578 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ----AYILKGCAFSA 115 (1050)
Q Consensus 41 ~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~----a~~~~g~~~~~ 115 (1050)
.++-.+-..|+.+.|++.|.++|.+. .+++.|.|||.++--.|+-++|+.++++|+++.-+..+ +|..+|.+|..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 44555667899999999999999999 77888999999999999999999999999998855443 99999999999
Q ss_pred cCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHH
Q 001578 116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEEL 149 (1050)
Q Consensus 116 lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~ 149 (1050)
+|+.+.|..+|+.|-. .+++=...+|.+++|-
T Consensus 128 ~g~dd~AR~DFe~AA~--LGS~FAr~QLV~lNPY 159 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQ--LGSKFAREQLVELNPY 159 (175)
T ss_pred hCchHHHHHhHHHHHH--hCCHHHHHHHHhcChH
Confidence 9999999999999944 3455566677777664
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.36 E-value=7.1e-06 Score=77.01 Aligned_cols=56 Identities=21% Similarity=0.145 Sum_probs=21.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHH
Q 001578 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---NIECLYLRASCYHAIGEYREAIKDYD 643 (1050)
Q Consensus 588 ~~~la~~~~~~g~~~eAi~~l~~al~~~p~---~~~~~~~la~~~~~~g~~~eA~~~~~ 643 (1050)
+..+|..+..+|++++|+..+++++...|+ +..+...++.++...|+.++|+..+-
T Consensus 41 ~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 41 LIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 333333333444444444444433333333 23333333333334444444443333
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.35 E-value=1.5e-05 Score=74.86 Aligned_cols=96 Identities=23% Similarity=0.157 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHHHH
Q 001578 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR---FSKAYHLR 591 (1050)
Q Consensus 518 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~l 591 (1050)
.+++.+|.++...|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 468899999999999999999999999975443 678999999999999999999999999999888 77888889
Q ss_pred HHHHHHCCCHHHHHHHHHHHHh
Q 001578 592 GLLLHGLGQHKKAIKDLSSGLG 613 (1050)
Q Consensus 592 a~~~~~~g~~~eAi~~l~~al~ 613 (1050)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988775
No 191
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.32 E-value=0.00011 Score=76.67 Aligned_cols=189 Identities=19% Similarity=0.082 Sum_probs=131.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 001578 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYT 521 (1050)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~ 521 (1050)
.+..++.-|...+..|++++|...|+.+....|.. ..+...++..+++.+++++|+...++.+.+.|.++ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 45677888888888888888888888888877754 56778888888888888888888888888887764 3566
Q ss_pred HHHHHHHHcC--------CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001578 522 YLGLALSSIG--------EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (1050)
Q Consensus 522 ~la~~~~~~g--------~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 593 (1050)
..|.+++..= -..+|+..++..+...|++.-+-..... +..++..+ +.--...|.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~L------A~~Em~Iar 175 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDAL------AGHEMAIAR 175 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHHH------HHHHHHHHH
Confidence 6666655421 2346677777777777776322111111 01111111 122345788
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH
Q 001578 594 LLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (1050)
Q Consensus 594 ~~~~~g~~~eAi~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 653 (1050)
.|.+.|.+..|+.-++.+++..|+. .+++..+..+|..+|-.++|...-.-.-...|+++
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 8999999999999999999887665 46888899999999999998876655555555553
No 192
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=1.1e-05 Score=79.44 Aligned_cols=112 Identities=27% Similarity=0.331 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 455 (1050)
++.+-.-|.-++..|+|++|..-|..+|...|..+ ..|.+.|.++++++.++.|+..+.++++++|.+..++.+.
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 45566778899999999999999999999988753 4677889999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001578 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (1050)
Q Consensus 456 a~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~ 492 (1050)
|.+|..+..+++|++.|.++++.+|....+....+.+
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 9999999999999999999999999776655444433
No 193
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.31 E-value=0.00024 Score=84.62 Aligned_cols=226 Identities=16% Similarity=0.095 Sum_probs=173.9
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001578 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505 (1050)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 505 (1050)
...+++.+|+....+.++..|+...+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..++++++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 34688999999999999999999999999999999999999999888888778888888999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH-HHHHHHHcCCh---------HHHHHHHH
Q 001578 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH-LTQFYQDLANS---------EKALECLQ 575 (1050)
Q Consensus 506 l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~-la~~~~~~g~~---------~~A~~~l~ 575 (1050)
|++++..+|. .+.++.+-.+|.+.+.|.+-.+.--+..+..|..+..+.. +..+....... .-|...++
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 9999999999 8888889999999998887666666666678887654433 33333333332 23555566
Q ss_pred HHHhhC-CCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHH-h-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578 576 QVLYID-KRFS-KAYHLRGLLLHGLGQHKKAIKDLSSGL-G-IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (1050)
Q Consensus 576 ~al~~~-p~~~-~~~~~la~~~~~~g~~~eAi~~l~~al-~-~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 651 (1050)
+.++.. +-.. .-....-.++..+|++++|...+..-+ + ..+.+..........+...+++.+-.+...+++...+|
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 666555 2111 123334456778899999999994332 3 33444444455667777888898888888888888888
Q ss_pred C
Q 001578 652 S 652 (1050)
Q Consensus 652 ~ 652 (1050)
+
T Consensus 259 d 259 (932)
T KOG2053|consen 259 D 259 (932)
T ss_pred c
Confidence 7
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.31 E-value=6.6e-05 Score=73.33 Aligned_cols=146 Identities=10% Similarity=0.102 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001578 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK-LDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542 (1050)
Q Consensus 464 ~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~-~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 542 (1050)
+.+....-..+.++..| ...-.+.+|..+.+.|++.+|..+|++++. +..+++..+..++...+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~Ap-Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAP-TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhch-hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 44445555555555555 334556677777777777777777777765 3556677777777777777777777777777
Q ss_pred HHHhCcCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001578 543 AIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (1050)
Q Consensus 543 al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~a 611 (1050)
..+.+|.. ++....+|..+...|++.+|...|+.++...|+ +.+....+..+..+|+..+|...+...
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 77776643 566677777777777777777777777777765 566666777777777777666555443
No 195
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.0018 Score=72.24 Aligned_cols=323 Identities=15% Similarity=0.092 Sum_probs=209.6
Q ss_pred HHHHHhhccCC---CcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcC-CHHHHH
Q 001578 368 FCVTRISKSKS---ISVDFRLSRGIAQV-NEGKYASAISIFDQILKED---PMY----PEALIGRGTARAFQR-ELEAAI 435 (1050)
Q Consensus 368 ~~~~~~~~~~~---~~~~~~~~~a~~~~-~~g~~~~Ai~~~~~al~~~---p~~----~~a~~~la~~~~~~g-~~~~A~ 435 (1050)
.|+..+....+ ..+...+.+|..++ ...+++.|...++++..+. |.. .++...++.+|.... .+..|.
T Consensus 30 kClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~K 109 (629)
T KOG2300|consen 30 KCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAK 109 (629)
T ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHH
Confidence 34444444333 34566777887665 5678999999999998653 333 356778899998877 888999
Q ss_pred HHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------------------CCCCHH----
Q 001578 436 SDFTEAIQSNPSAG----EAWKRRGQARAALGESVEAIQDLSKALEF-----------------------EPNSAD---- 484 (1050)
Q Consensus 436 ~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~l~kal~~-----------------------~p~~~~---- 484 (1050)
..+.+++++....+ ...+.+++++.-..++..|++.+.-..+. .+++.+
T Consensus 110 alLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~l 189 (629)
T KOG2300|consen 110 ALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKL 189 (629)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 99999999977654 45678999999999999999875321111 111110
Q ss_pred -----------------------HHHHHH-HHHHHcCCHHHHHHHHHHH---HHh-CCC-----------C-H-------
Q 001578 485 -----------------------ILHERG-IVNFKFKDFNAAVEDLSAC---VKL-DKE-----------N-K------- 517 (1050)
Q Consensus 485 -----------------------~~~~lg-~~~~~~g~~~~A~~~l~~a---l~~-~p~-----------~-~------- 517 (1050)
.+..+- ..|...|+...+...+++. +.. .+. + +
T Consensus 190 l~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlp 269 (629)
T KOG2300|consen 190 LQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLP 269 (629)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhcc
Confidence 111111 1233445555444444432 211 110 0 0
Q ss_pred ----HHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCcC------cH--------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 001578 518 ----SAYTYLGLA--LSSIGEYKKAEEAHLKAIQLDRN------FL--------EAWGHLTQFYQDLANSEKALECLQQV 577 (1050)
Q Consensus 518 ----~~~~~la~~--~~~~g~~~eA~~~l~~al~~~p~------~~--------~~~~~la~~~~~~g~~~~A~~~l~~a 577 (1050)
.++..+-.+ -...|-+++|.++-++++..... .. ..+-++..+-.-.|++.+|++....+
T Consensus 270 keqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm 349 (629)
T KOG2300|consen 270 KEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDM 349 (629)
T ss_pred HhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 011111111 12356678888887777765221 11 22345566667789999999988877
Q ss_pred Hhh---CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C--HHHHHHHHHHHHHccCHHHHHHHHHH
Q 001578 578 LYI---DKR-------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-N--IECLYLRASCYHAIGEYREAIKDYDA 644 (1050)
Q Consensus 578 l~~---~p~-------~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~-~--~~~~~~la~~~~~~g~~~eA~~~~~~ 644 (1050)
.+. .|. .+.++..+|.....-+.++.|...|..|.++... + ..+-.++|.+|...|+-+.-.+.++.
T Consensus 350 ~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~ 429 (629)
T KOG2300|consen 350 KNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL 429 (629)
T ss_pred HHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh
Confidence 654 333 2456778888888899999999999999887543 2 33556789999998876665555554
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC
Q 001578 645 ALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDID 690 (1050)
Q Consensus 645 al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~ 690 (1050)
.-..+..........+..+|-.|...+..+++++|...+...++..
T Consensus 430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 4333333344456677889999999999999999999998888766
No 196
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=0.00012 Score=81.29 Aligned_cols=274 Identities=15% Similarity=0.052 Sum_probs=176.0
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 001578 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQIL-KEDPM--------YPEALIGRGTARAFQRELEAAISDFTEAIQS-- 444 (1050)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al-~~~p~--------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-- 444 (1050)
...+++.+++..+..++..|+|.+|.+.+...- ...|. ....+.++|.++++.|.|..+..+|.+|++-
T Consensus 235 ~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 235 IAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred hcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 345778899999999999999999999876542 22332 1234578999999999999999999999961
Q ss_pred -------CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHH
Q 001578 445 -------NP---------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD---FNAAVED 505 (1050)
Q Consensus 445 -------~p---------~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~ 505 (1050)
.| ...++.++.|..|...|+.-.|.++|.++......++.+|..++.++....+ .++....
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s 394 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSS 394 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCC
Confidence 11 2356889999999999999999999999999999999999999998875321 1111111
Q ss_pred HHH--------------HH--Hh-----CCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHH-----------
Q 001578 506 LSA--------------CV--KL-----DKEN---KSAYTYLGLALSS-----IGEYKKAEEAHLKAIQ----------- 545 (1050)
Q Consensus 506 l~~--------------al--~~-----~p~~---~~~~~~la~~~~~-----~g~~~eA~~~l~~al~----------- 545 (1050)
..+ .+ +. .+.. +..-..+|.++.+ ...-..--..+.-+..
T Consensus 395 ~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~ 474 (696)
T KOG2471|consen 395 LSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHE 474 (696)
T ss_pred cccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCC
Confidence 100 00 00 0000 0111112222211 1100000000000000
Q ss_pred -----------------hCc-Cc-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-
Q 001578 546 -----------------LDR-NF-----------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL- 595 (1050)
Q Consensus 546 -----------------~~p-~~-----------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~- 595 (1050)
-.| .. ..++.+.+.+-.++|+.-.|+..-++.++. |+...++..+|.+|
T Consensus 475 e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYA 553 (696)
T KOG2471|consen 475 EGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYA 553 (696)
T ss_pred CCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHH
Confidence 001 11 134556677778899999999999998865 44456666665555
Q ss_pred ----HHCCCHHHHHHHHHHHH------h-----------------cCCC----------C-----HHHHHHHHHHHHHcc
Q 001578 596 ----HGLGQHKKAIKDLSSGL------G-----------------IDPS----------N-----IECLYLRASCYHAIG 633 (1050)
Q Consensus 596 ----~~~g~~~eAi~~l~~al------~-----------------~~p~----------~-----~~~~~~la~~~~~~g 633 (1050)
..+.+..+|..++.--+ . ++|. . ...++++|.+|.-+|
T Consensus 554 aEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~ 633 (696)
T KOG2471|consen 554 AEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQG 633 (696)
T ss_pred HHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhc
Confidence 45778888887665421 0 0111 1 136789999999999
Q ss_pred CHHHHHHHHHHHHHhcC
Q 001578 634 EYREAIKDYDAALDLEL 650 (1050)
Q Consensus 634 ~~~eA~~~~~~al~l~p 650 (1050)
++++|..++..|..+-|
T Consensus 634 ~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 634 HHDQAKSLLTHAATLLH 650 (696)
T ss_pred ccHHHHHHHHHHHHhhh
Confidence 99999999999998877
No 197
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=6.7e-05 Score=75.97 Aligned_cols=144 Identities=15% Similarity=0.181 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCC------
Q 001578 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK------AYHLRGLLLHGL-GQHKKAIKDLSSGLGIDPSN------ 618 (1050)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~------~~~~la~~~~~~-g~~~eAi~~l~~al~~~p~~------ 618 (1050)
..|...+.+|. ..+..+|+.++++++++..+... .+..+|.+|... .++++|+.+|+++-+.....
T Consensus 75 t~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA 153 (288)
T KOG1586|consen 75 TTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA 153 (288)
T ss_pred HHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence 34444455554 44778888888888777654432 345788888664 88999999999987764432
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHH
Q 001578 619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (1050)
Q Consensus 619 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~ 696 (1050)
..++...|..-..+++|.+|+..|++.....-+++-..+..-..++..|+|+....+.-.+...+++-.+++|.|.+-
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 246667777888899999999999999988888776555555667788888888788877888888888999999866
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.26 E-value=2.8e-06 Score=71.63 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=47.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001578 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (1050)
Q Consensus 392 ~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (1050)
+..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456777777777777777777777777777777777777777777777777777777666655554
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.23 E-value=4.1e-06 Score=71.76 Aligned_cols=64 Identities=27% Similarity=0.325 Sum_probs=54.6
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHh
Q 001578 76 AFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSAD 139 (1050)
Q Consensus 76 a~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~ 139 (1050)
+.+|++.++|++|+..+++++.++|+++.+++.+|.++..+|++++|+.+|+++++++|+.+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4578888899999999999999999988899999999999999999999999998888866543
No 200
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.20 E-value=3.4e-05 Score=81.17 Aligned_cols=104 Identities=22% Similarity=0.289 Sum_probs=93.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 001578 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQ 457 (1050)
Q Consensus 384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 457 (1050)
.|..|..++..|+|..|...|..-++..|+. +.+++.||.+++.+|+++.|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7889999999999999999999999999886 6899999999999999999999999999988765 688999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 001578 458 ARAALGESVEAIQDLSKALEFEPNSADILH 487 (1050)
Q Consensus 458 ~~~~~g~~~eA~~~l~kal~~~p~~~~~~~ 487 (1050)
+...+|+.++|...|+++++..|+...+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999997765543
No 201
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.19 E-value=4.3e-05 Score=72.90 Aligned_cols=86 Identities=21% Similarity=0.223 Sum_probs=75.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHH
Q 001578 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAW 452 (1050)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 452 (1050)
..+..++..|...+..|+|.+|++.|+.+....|.. ..+.+.+|.+|+..+++++|+..+++-++++|.++ .++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 457889999999999999999999999999988765 57889999999999999999999999999999874 477
Q ss_pred HHHHHHHHHcCC
Q 001578 453 KRRGQARAALGE 464 (1050)
Q Consensus 453 ~~la~~~~~~g~ 464 (1050)
+..|.+++.+..
T Consensus 88 Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 88 YMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHhh
Confidence 888888877654
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.19 E-value=7.7e-06 Score=70.04 Aligned_cols=64 Identities=28% Similarity=0.475 Sum_probs=50.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH
Q 001578 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655 (1050)
Q Consensus 592 a~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~ 655 (1050)
..+|...+++++|+.++++++.++|+++..++.+|.++..+|++.+|++.|+++++..|+++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4567778888888888888888888888888888888888888888888888888888877664
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.0025 Score=65.82 Aligned_cols=226 Identities=13% Similarity=0.069 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-------------------GEAWKRRGQARAALGESVEAIQDLSKA 475 (1050)
Q Consensus 415 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~g~~~eA~~~l~ka 475 (1050)
...|...-.++.++..+++|..-+...-+++..+ .......|.+....|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3444445555555666666655554433332111 011223455555566666665554443
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHH
Q 001578 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAW 554 (1050)
Q Consensus 476 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~~ 554 (1050)
... ...+-.........+..++.+++-+ ..+.+.+..++...|.|.-....+.+.++.+ |..+...
T Consensus 149 ~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~ 215 (366)
T KOG2796|consen 149 KTV-------VSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLL 215 (366)
T ss_pred HHH-------HHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHH
Confidence 321 1111222222233355555555543 3466778888888999999999999999988 5667888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 001578 555 GHLTQFYQDLANSEKALECLQQVLYID------KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628 (1050)
Q Consensus 555 ~~la~~~~~~g~~~~A~~~l~~al~~~------p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~ 628 (1050)
..+|.+..+.|+.+.|..+|++.-+.. .....+..+.+.++.-.+++.+|...|.+++..+|.++.+-.+.|.|
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 899999999999999999998654332 23345677888899999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHHhcCCCH
Q 001578 629 YHAIGEYREAIKDYDAALDLELDSM 653 (1050)
Q Consensus 629 ~~~~g~~~eA~~~~~~al~l~p~~~ 653 (1050)
+..+|+..+|++.++.+++..|...
T Consensus 296 llYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999999999753
No 204
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.17 E-value=5.4e-06 Score=69.90 Aligned_cols=57 Identities=32% Similarity=0.410 Sum_probs=26.3
Q ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH
Q 001578 597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (1050)
Q Consensus 597 ~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 653 (1050)
..|++++|+..|++++..+|++.++++.+|.+|...|++++|...+++++..+|+++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 344444444444444444444444444444444444444444444444444444443
No 205
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00036 Score=70.77 Aligned_cols=139 Identities=15% Similarity=0.060 Sum_probs=103.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH------HHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCC------HH
Q 001578 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL------EAWGHLTQFYQDL-ANSEKALECLQQVLYIDKRF------SK 586 (1050)
Q Consensus 520 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~------~~~~~la~~~~~~-g~~~~A~~~l~~al~~~p~~------~~ 586 (1050)
|...+.+| +.++.++|+.++++++++..+.. ..+..+|.+|... .++++|+.+|+++-+..... ..
T Consensus 77 YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK 155 (288)
T KOG1586|consen 77 YVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANK 155 (288)
T ss_pred HHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH
Confidence 33334444 44588888888888888765542 3345788888765 89999999999998765432 23
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 001578 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-------ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (1050)
Q Consensus 587 ~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~-------~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~ 659 (1050)
.+...+..-...++|.+|+..|++.....-++. +.++.-|.|++...+.-.+...+++..+++|...+..-..
T Consensus 156 C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREck 235 (288)
T KOG1586|consen 156 CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECK 235 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHH
Confidence 566677777889999999999999887655553 3456678888888999999999999999999887755433
No 206
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.11 E-value=5.6e-05 Score=79.60 Aligned_cols=100 Identities=23% Similarity=0.246 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHH
Q 001578 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQ 559 (1050)
Q Consensus 486 ~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~ 559 (1050)
.++.|.-++..|+|..|...|...++..|+. +++++.||.+++.+|++++|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 3344444444444444444444444444433 2344444444444444444444444444444333 344444444
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCH
Q 001578 560 FYQDLANSEKALECLQQVLYIDKRFS 585 (1050)
Q Consensus 560 ~~~~~g~~~~A~~~l~~al~~~p~~~ 585 (1050)
+..++|+.++|...|+++++..|+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 44444444444444444444444433
No 207
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.0005 Score=76.42 Aligned_cols=263 Identities=18% Similarity=0.173 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578 383 FRLSRGIAQVNEGKYASAISIFDQILKE---------DP---------MYPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (1050)
Q Consensus 383 ~~~~~a~~~~~~g~~~~Ai~~~~~al~~---------~p---------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (1050)
++..+|.++++.|.|.-+..+|.+++.. .| ...+.+++.|..|...|+.-.|.++|.++...
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 4468899999999999999999999951 11 23578899999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHH--------------HHhh-------CCCC---HHHHHHHHHHHHHcC
Q 001578 445 NPSAGEAWKRRGQARAALGE---SVEAIQDLSK--------------ALEF-------EPNS---ADILHERGIVNFKFK 497 (1050)
Q Consensus 445 ~p~~~~~~~~la~~~~~~g~---~~eA~~~l~k--------------al~~-------~p~~---~~~~~~lg~~~~~~g 497 (1050)
...++..|.++|.+.+...+ .++......+ .+-+ .+.. +..-..++.++.+.+
T Consensus 365 fh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrna 444 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNA 444 (696)
T ss_pred HhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhh
Confidence 99999999999999875321 1111111111 0000 0000 111112222222111
Q ss_pred --------CHHHHHHHHHHHHH-------------------------hCC-CC-----------HHHHHHHHHHHHHcCC
Q 001578 498 --------DFNAAVEDLSACVK-------------------------LDK-EN-----------KSAYTYLGLALSSIGE 532 (1050)
Q Consensus 498 --------~~~~A~~~l~~al~-------------------------~~p-~~-----------~~~~~~la~~~~~~g~ 532 (1050)
++..-+..-...-+ -.| .. ..++.+.+.+-..+|+
T Consensus 445 l~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd 524 (696)
T KOG2471|consen 445 LYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGD 524 (696)
T ss_pred hhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00000000000000 001 11 1234556777788999
Q ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHH-----HHcCChHHHHHHHHHHHh-----------------------hCC--
Q 001578 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFY-----QDLANSEKALECLQQVLY-----------------------IDK-- 582 (1050)
Q Consensus 533 ~~eA~~~l~~al~~~p~~~~~~~~la~~~-----~~~g~~~~A~~~l~~al~-----------------------~~p-- 582 (1050)
.-.|+..-.+.++. |+...++..+|.+| +-+.+..+|...+.--+- ++|
T Consensus 525 ~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~ 603 (696)
T KOG2471|consen 525 PIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPST 603 (696)
T ss_pred hhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcC
Confidence 99999999988875 45556666666554 456777777766654210 011
Q ss_pred ----C----C-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 001578 583 ----R----F-----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP--SNIECLYLRASCYHAIGEYREAIKDYDAAL 646 (1050)
Q Consensus 583 ----~----~-----~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al 646 (1050)
+ . ...++++|.++.-+|++++|..++..|..+-+ .++++....-.+-..+|+...|...+++.-
T Consensus 604 ~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 604 GRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred CCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence 0 1 12478999999999999999999999988877 456676666667778999999998887753
No 208
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.05 E-value=0.0001 Score=70.38 Aligned_cols=104 Identities=17% Similarity=0.099 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHH
Q 001578 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI---ECLYL 624 (1050)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~---~~~~~ 624 (1050)
+..++.-|...++.|+|++|++.|+.+....|.. ..+...++.+|+..+++++|+..+++.++++|.++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4455566666666666666666666666665533 35566666666666777777777776666666653 45666
Q ss_pred HHHHHHHccC---------------HHHHHHHHHHHHHhcCCCHH
Q 001578 625 RASCYHAIGE---------------YREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 625 la~~~~~~g~---------------~~eA~~~~~~al~l~p~~~~ 654 (1050)
.|.++..+.. ..+|...|++.+...|++..
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 6666666655 77999999999999999864
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.0029 Score=65.36 Aligned_cols=226 Identities=15% Similarity=0.115 Sum_probs=163.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001578 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-------------------PEALIGRGTARAFQRELEAAISDFTE 440 (1050)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~-------------------~~a~~~la~~~~~~g~~~~A~~~~~~ 440 (1050)
....|-.+-.++.+...+++|..-+...-+.+..+ .......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 45566666777778888888887776655443211 12234556677778888877766655
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Q 001578 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSA 519 (1050)
Q Consensus 441 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~-p~~~~~ 519 (1050)
.... ...+-.........+..++..++-+ ..+.+.+..++.-.|.|.-.+..+.+.++.+ |..+..
T Consensus 148 L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L 214 (366)
T KOG2796|consen 148 LKTV-------VSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL 214 (366)
T ss_pred HHHH-------HHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence 4321 1112222222223355555555543 3466778888888889999999999999888 557777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001578 520 YTYLGLALSSIGEYKKAEEAHLKAIQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (1050)
Q Consensus 520 ~~~la~~~~~~g~~~eA~~~l~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 593 (1050)
...+|.+..+.|+.+.|..++++.-+.. ....-+..+.+.+|.-.+++.+|...+.+++..+|.++.+-.+.|.
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL 294 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL 294 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH
Confidence 8889999999999999998888554332 2234566677888888899999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCC
Q 001578 594 LLHGLGQHKKAIKDLSSGLGIDPSN 618 (1050)
Q Consensus 594 ~~~~~g~~~eAi~~l~~al~~~p~~ 618 (1050)
|+...|+..+|++.++.++...|..
T Consensus 295 cllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 295 CLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999998874
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.02 E-value=2e-05 Score=88.66 Aligned_cols=69 Identities=25% Similarity=0.290 Sum_probs=59.7
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC---LYLRASCYHAIGEYREAIKDYDAALDL 648 (1050)
Q Consensus 580 ~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~l 648 (1050)
.+|+++.+++++|.+|..+|+|++|+..|+++++++|++.++ |+++|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457788888888988888899999999999999988888754 889999999999999999999999887
No 211
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.00 E-value=0.00023 Score=65.50 Aligned_cols=98 Identities=24% Similarity=0.301 Sum_probs=86.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHH
Q 001578 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQAR 459 (1050)
Q Consensus 384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 459 (1050)
+-..|..+...|+.+.|++.|.+++...|..+.+|.+.+..+..+|+.++|++.+++++++.... ..++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44568888899999999999999999999999999999999999999999999999999986554 45788899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCC
Q 001578 460 AALGESVEAIQDLSKALEFEPN 481 (1050)
Q Consensus 460 ~~~g~~~eA~~~l~kal~~~p~ 481 (1050)
..+|+.+.|...|+.+-++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999988877643
No 212
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.93 E-value=7.5e-05 Score=73.42 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 001578 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE----------YREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIAL 670 (1050)
Q Consensus 601 ~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~----------~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~ 670 (1050)
++.|.+.++.....+|.+++.+++-|.++..+.+ +++|+.-|++|+.++|+..++++..+.++...|...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 3556666666666666666666666655554432 456677777777777777777777777777666543
Q ss_pred H----HhcCHHHHHHHHHHhhccCCCCHHHH
Q 001578 671 Y----TASKINSEFCWFDIDGDIDPLFKEYW 697 (1050)
Q Consensus 671 ~----~~~~~~~A~~~l~~a~~l~p~~~e~w 697 (1050)
- ....|++|..+|+++.+.+|++..|+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 2 23568999999999999999999986
No 213
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.92 E-value=6.3e-05 Score=84.76 Aligned_cols=68 Identities=28% Similarity=0.258 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH---HHHHHHHHHHcCChHHHHHHHHHHHhh
Q 001578 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA---WGHLTQFYQDLANSEKALECLQQVLYI 580 (1050)
Q Consensus 513 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~l~~al~~ 580 (1050)
+|+++.+++++|.+|+..|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555555555555432 555555555555555555555555543
No 214
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.00062 Score=72.37 Aligned_cols=161 Identities=14% Similarity=0.053 Sum_probs=128.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHH
Q 001578 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNS---ADILHERGIVN 493 (1050)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-~p~~---~~~~~~lg~~~ 493 (1050)
....+.+....|++.+|....++.++..|.+.-++..--.++...|+...-...+++.+.. +++. ..+.-.++..+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3444556667788889989999999999999888888888889999999999999998877 6655 44555677778
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHcCChHH
Q 001578 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEK 569 (1050)
Q Consensus 494 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~~ 569 (1050)
...|-|++|.+..++++++++.+.-+...++.++...|++.++.+...+.-..-... ..-|...|.++.+.+.|+.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK 265 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence 889999999999999999999999999999999999999999998887653322211 2334567788888899999
Q ss_pred HHHHHHHHH
Q 001578 570 ALECLQQVL 578 (1050)
Q Consensus 570 A~~~l~~al 578 (1050)
|+++|.+-+
T Consensus 266 aleIyD~ei 274 (491)
T KOG2610|consen 266 ALEIYDREI 274 (491)
T ss_pred HHHHHHHHH
Confidence 999998765
No 215
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.004 Score=63.85 Aligned_cols=69 Identities=12% Similarity=-0.002 Sum_probs=44.4
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQS 444 (1050)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (1050)
.....+..+..-+.++...++|++|..++.++.+-..++ +.++-..|........+.++..+|++|..+
T Consensus 26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL 100 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333445666677777778888888888888887544333 234444555555666677777777776543
No 216
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.86 E-value=0.00011 Score=72.32 Aligned_cols=98 Identities=15% Similarity=0.211 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001578 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (1050)
Q Consensus 533 ~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al 612 (1050)
++.|.+.++.....+|.+++.+++.|.++.++.++...-+. ..-+++|+.-|++|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es------------------------~~miedAisK~eeAL 62 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPES------------------------KKMIEDAISKFEEAL 62 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHH------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchH------------------------HHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666554333110000 012456667777777
Q ss_pred hcCCCCHHHHHHHHHHHHHccC-----------HHHHHHHHHHHHHhcCCCHH
Q 001578 613 GIDPSNIECLYLRASCYHAIGE-----------YREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 613 ~~~p~~~~~~~~la~~~~~~g~-----------~~eA~~~~~~al~l~p~~~~ 654 (1050)
.++|+..++++.+|.+|..++. |++|..+|++|.+.+|++..
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 7777777777777777765543 78899999999999999854
No 217
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00091 Score=71.17 Aligned_cols=161 Identities=16% Similarity=0.051 Sum_probs=135.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHH
Q 001578 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSA---GEAWKRRGQAR 459 (1050)
Q Consensus 384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~ 459 (1050)
....+..+...|++.+|...++++++..|.+.-++..--.+++..|+.+.-...+++++.. +++. ..+.-.++-.+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3445667788899999999999999999999999988889999999999999999999877 6655 45566778888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHH
Q 001578 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN----KSAYTYLGLALSSIGEYKK 535 (1050)
Q Consensus 460 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~e 535 (1050)
...|-|++|.+..++++++++.+..+...++.++...+++.++.++..+.-..-... ..-|...|.++..-+.|+.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK 265 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence 999999999999999999999999999999999999999999999987754332211 1234456778888899999
Q ss_pred HHHHHHHHH
Q 001578 536 AEEAHLKAI 544 (1050)
Q Consensus 536 A~~~l~~al 544 (1050)
|++.|.+-+
T Consensus 266 aleIyD~ei 274 (491)
T KOG2610|consen 266 ALEIYDREI 274 (491)
T ss_pred HHHHHHHHH
Confidence 999998754
No 218
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.83 E-value=0.063 Score=61.31 Aligned_cols=318 Identities=12% Similarity=0.063 Sum_probs=175.8
Q ss_pred HHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 001578 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450 (1050)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 450 (1050)
.+.++.+|.+.+.|+.+-..+..+ .++++.+.|++.+...|..+.+|.......+...+|+.....|.+++..--+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 344678999999999999888776 9999999999999999999999999999999999999999999998864322 33
Q ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHH----h---hCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhC
Q 001578 451 AWKR-RGQARAALGESVEAIQDLSKAL----E---FEPNSADILHERGIVNF---------KFKDFNAAVEDLSACVKLD 513 (1050)
Q Consensus 451 ~~~~-la~~~~~~g~~~eA~~~l~kal----~---~~p~~~~~~~~lg~~~~---------~~g~~~~A~~~l~~al~~~ 513 (1050)
.|.. +..+....|+...+....-++. . .++....+|...+..+. ...+.+.-...|++++..-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 3322 3333333444333333322222 2 24444445554444332 2224445556666665432
Q ss_pred CCCHH-HHH-------------HHHHHHHHcCCHHHHHHH----------------------------------------
Q 001578 514 KENKS-AYT-------------YLGLALSSIGEYKKAEEA---------------------------------------- 539 (1050)
Q Consensus 514 p~~~~-~~~-------------~la~~~~~~g~~~eA~~~---------------------------------------- 539 (1050)
-.+.+ .|. ..-.+......|..|...
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 22211 000 000111111222333333
Q ss_pred --------------------HHHHHHhCcCcHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhhCC-CC
Q 001578 540 --------------------HLKAIQLDRNFLEAWGHLTQFYQDLAN--------------SEKALECLQQVLYIDK-RF 584 (1050)
Q Consensus 540 --------------------l~~al~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~l~~al~~~p-~~ 584 (1050)
|++++..-+-.+++|+..+..+...++ .+++..+|++++.... .+
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 333333334445555554444444444 4566666666654322 22
Q ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 001578 585 SKAYHLRGLLLHGLG---QHKKAIKDLSSGLGIDPSNI-ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC 660 (1050)
Q Consensus 585 ~~~~~~la~~~~~~g---~~~eAi~~l~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~ 660 (1050)
...++.++..-...- .++..-.++++++.+...++ -++..+-..-.+..-.+.|...|.+|-+..-...+.++..+
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 233333333322221 24455555666555433222 23444444444555566677777777654433322222211
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHH
Q 001578 661 LAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY 696 (1050)
Q Consensus 661 ~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~ 696 (1050)
-+.++..++..-|+..|+..+...++.++|
T Consensus 408 ------~mEy~cskD~~~AfrIFeLGLkkf~d~p~y 437 (656)
T KOG1914|consen 408 ------LMEYYCSKDKETAFRIFELGLKKFGDSPEY 437 (656)
T ss_pred ------HHHHHhcCChhHHHHHHHHHHHhcCCChHH
Confidence 123456688888999998888888888877
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.80 E-value=2.2e-05 Score=68.14 Aligned_cols=63 Identities=29% Similarity=0.510 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---C-C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGID---P-S---NIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (1050)
Q Consensus 586 ~~~~~la~~~~~~g~~~eAi~~l~~al~~~---p-~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 648 (1050)
.++.++|.+|..+|++++|+.+|++++.+. + + ...++.++|.++..+|++++|++++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445555555555555555555555555431 1 1 1345556666666666666666666666554
No 220
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.78 E-value=5.8e-05 Score=84.29 Aligned_cols=106 Identities=22% Similarity=0.066 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHh---hCHHHHHHHHHHHHHhCCCChh
Q 001578 29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQL---ELHKHVIRDCDKALQLDPTLLQ 104 (1050)
Q Consensus 29 ~~~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~---~~~~~Ai~~~~~Al~l~P~~~~ 104 (1050)
.-++.+.+...+.+++..|-.+.+..||..|.+++... ....+|.|||.++++. |+.-.|+.+|..|+.+||...+
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~k 446 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQK 446 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHH
Confidence 44555556666789999999999999999999999998 5566699999999985 4888999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 001578 105 AYILKGCAFSALGRKEEALSVWEKGYEHAL 134 (1050)
Q Consensus 105 a~~~~g~~~~~lg~~~~A~~~~~~al~~~~ 134 (1050)
||++++.++..++++.+|++....+.-..|
T Consensus 447 ah~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 447 AHFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 999999999999999999988776643344
No 221
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.74 E-value=0.0025 Score=72.12 Aligned_cols=192 Identities=17% Similarity=0.124 Sum_probs=119.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 001578 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498 (1050)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~ 498 (1050)
..+..-..+..+.+.-++...+|++++|+.+++|..+|.-. ..-..+|.++|+++++...... .........|.
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~ 245 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGH 245 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccc
Confidence 34444555678888899999999999999988887776532 2346788888888887643211 11111111111
Q ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHcCChHHHHHHH
Q 001578 499 FNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECL 574 (1050)
Q Consensus 499 ~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l 574 (1050)
.-+ .......+ ..+...+|.+..++|+.++|++.++..++..|. +..++.++..++..++.|.++...+
T Consensus 246 ~~e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 246 FWE-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhh-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 111 11111111 344567888888888888888888888887765 3567888888888888888888888
Q ss_pred HHHHhh-CCCCHHHHHHHHHHHHH-CCC---------------HHHHHHHHHHHHhcCCCCHHHHH
Q 001578 575 QQVLYI-DKRFSKAYHLRGLLLHG-LGQ---------------HKKAIKDLSSGLGIDPSNIECLY 623 (1050)
Q Consensus 575 ~~al~~-~p~~~~~~~~la~~~~~-~g~---------------~~eAi~~l~~al~~~p~~~~~~~ 623 (1050)
.+.-++ -|..+...+..|.+..+ .++ -..|++.+.+|++.+|.-+..+.
T Consensus 319 ~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 319 AKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 775333 24455555554444322 111 12356677777777777665443
No 222
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0048 Score=63.95 Aligned_cols=234 Identities=16% Similarity=0.226 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHH
Q 001578 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFK-DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK-KAEEAHLKA 543 (1050)
Q Consensus 466 ~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~-eA~~~l~~a 543 (1050)
..|+.+...++.++|.+-.+|...-.++..++ +..+-++++.+.++-+|.+..+|...-.+....|++. .-++..+.+
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 33444555555555555544444444443332 3444455555555555555555555555555555554 445555555
Q ss_pred HHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CC-----CHHHHHHHHHHHHhcCCC
Q 001578 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG-LG-----QHKKAIKDLSSGLGIDPS 617 (1050)
Q Consensus 544 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~-~g-----~~~eAi~~l~~al~~~p~ 617 (1050)
+..+..+..+|...-.+....+.++.-+.+..+.++.+-.+-.+|..+-.+... .| ..+.-+.+..+.+.+.|+
T Consensus 140 l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~ 219 (318)
T KOG0530|consen 140 LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN 219 (318)
T ss_pred HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence 555555555555555555555555555555555555544333333322111111 11 123344555556666666
Q ss_pred CHHHHHHHHHHHHH-cc--CHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHhh-cc
Q 001578 618 NIECLYLRASCYHA-IG--EYREAIKDYDAAL-DLELDSMEKFVLQCLAFYQKEIALYTASKI---NSEFCWFDIDG-DI 689 (1050)
Q Consensus 618 ~~~~~~~la~~~~~-~g--~~~eA~~~~~~al-~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~---~~A~~~l~~a~-~l 689 (1050)
+..+|..|.-++.. .| ...+-.......+ ...-.+|.....+.. .|......+..+.- .+|...++... +.
T Consensus 220 NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d-~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~ 298 (318)
T KOG0530|consen 220 NESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLD-LYAEDALAYKSSAEELARKAVKLYEDLAIKV 298 (318)
T ss_pred CccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHH-HHHHHHhhccccchHHHHHHHHHHHHHhhcc
Confidence 66666666655554 33 1122222222222 222222322211111 11111111222222 24666665544 89
Q ss_pred CCCCHHHHHhh
Q 001578 690 DPLFKEYWCKR 700 (1050)
Q Consensus 690 ~p~~~e~w~~r 700 (1050)
||--+.||+++
T Consensus 299 DpiR~nyW~~~ 309 (318)
T KOG0530|consen 299 DPIRKNYWRHK 309 (318)
T ss_pred CcHHHHHHHHH
Confidence 99999999766
No 223
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.73 E-value=0.18 Score=58.84 Aligned_cols=329 Identities=10% Similarity=0.032 Sum_probs=213.5
Q ss_pred HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCC
Q 001578 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGT-ARAFQRELEAAISDFTEAIQSNPS 447 (1050)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~-~~~~~g~~~~A~~~~~~al~~~p~ 447 (1050)
.+...+...|..-..|-.-|..-.+.|..+.+.+.|++++.--|.....|...-. +--..|+.+.-...|++|......
T Consensus 67 ~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~ 146 (577)
T KOG1258|consen 67 VYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL 146 (577)
T ss_pred HHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc
Confidence 4566677889989999999999999999999999999999999987777765433 333567788888888888877654
Q ss_pred c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH----------------------HH-HHHH-------
Q 001578 448 A---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE----------------------RG-IVNF------- 494 (1050)
Q Consensus 448 ~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~----------------------lg-~~~~------- 494 (1050)
+ ...|-.+-..-..++++..-...|++.++..-.....++. +. ....
T Consensus 147 dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~ 226 (577)
T KOG1258|consen 147 DFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHS 226 (577)
T ss_pred chhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccc
Confidence 3 2233333333345556666666666655542111110000 00 0000
Q ss_pred ----------------HcCCHHHHHHHHHH------------------------HHHh-----CCC---CHHHHHHHHHH
Q 001578 495 ----------------KFKDFNAAVEDLSA------------------------CVKL-----DKE---NKSAYTYLGLA 526 (1050)
Q Consensus 495 ----------------~~g~~~~A~~~l~~------------------------al~~-----~p~---~~~~~~~la~~ 526 (1050)
..+.++++...+.+ .++. .|. ....|......
T Consensus 227 ~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf 306 (577)
T KOG1258|consen 227 QEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDF 306 (577)
T ss_pred cChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhh
Confidence 00111222211111 1111 111 12345555666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHH
Q 001578 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAI 605 (1050)
Q Consensus 527 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eAi 605 (1050)
-...|+++...-.|++++--.....+.|...+......|+.+-|...+..+.++. |..+.+...-+.+-...|++..|.
T Consensus 307 ~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~ 386 (577)
T KOG1258|consen 307 EITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK 386 (577)
T ss_pred hhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence 6778888888888888888777788888888888888888888888888777764 566677777777788888899999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH---HHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhcCHHHHHH
Q 001578 606 KDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK---DYDAALDLELDSMEKFVLQCLAFYQKEIAL-YTASKINSEFC 681 (1050)
Q Consensus 606 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~---~~~~al~l~p~~~~~~~~~~~~~~~~g~~~-~~~~~~~~A~~ 681 (1050)
..+++...-.|+..++-...+......|+.+.+.. ++.....-.. +.. .....+.+..... .-.++.+.|..
T Consensus 387 ~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~-~~~---i~~~l~~~~~r~~~~i~~d~~~a~~ 462 (577)
T KOG1258|consen 387 VILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE-NNG---ILEKLYVKFARLRYKIREDADLARI 462 (577)
T ss_pred HHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc-Ccc---hhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99988888778888887778888888888888874 3322222111 111 1112222222222 23467889999
Q ss_pred HHHHhhccCCCCHHHHHhhc
Q 001578 682 WFDIDGDIDPLFKEYWCKRL 701 (1050)
Q Consensus 682 ~l~~a~~l~p~~~e~w~~r~ 701 (1050)
.+..+.++.|.....|....
T Consensus 463 ~l~~~~~~~~~~k~~~~~~~ 482 (577)
T KOG1258|consen 463 ILLEANDILPDCKVLYLELI 482 (577)
T ss_pred HHHHhhhcCCccHHHHHHHH
Confidence 99999999999998875443
No 224
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.0049 Score=63.22 Aligned_cols=115 Identities=16% Similarity=0.045 Sum_probs=71.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCCHHHHHHHHHHH
Q 001578 528 SSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYI------DKRFSKAYHLRGLLL 595 (1050)
Q Consensus 528 ~~~g~~~eA~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~------~p~~~~~~~~la~~~ 595 (1050)
...-++++|+++|++++.+-... .+.+...++++.+..++.+|...+.+-... .++....+.....++
T Consensus 121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~ 200 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY 200 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence 44556777777777777664333 344556677788888888887777664332 233334455555566
Q ss_pred HHCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 001578 596 HGLGQHKKAIKDLSSGLGI----DPSNIECLYLRASCYHAIGEYREAIKDYD 643 (1050)
Q Consensus 596 ~~~g~~~eAi~~l~~al~~----~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 643 (1050)
....+|..|..+++...++ .+++..++.+|-..|. .|+.++....+.
T Consensus 201 L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 201 LYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred hhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 6667888888888887665 3444556666655543 466666554443
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.67 E-value=8.4e-05 Score=64.51 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 001578 616 PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI 689 (1050)
Q Consensus 616 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l 689 (1050)
|+-..++.++|.+|..+|++++|+.+|++++++.-...+.....+.+++..|.++...|++++|+.+|++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33467899999999999999999999999998843333334445789999999999999999999999999875
No 226
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.66 E-value=0.078 Score=64.28 Aligned_cols=304 Identities=16% Similarity=0.078 Sum_probs=196.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHH
Q 001578 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSNPS-----AGEAW 452 (1050)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~ 452 (1050)
.-.+.+..-+..+...|...+|+...-.+ .+|.-. ..+...+.-+...++..- +...++.-|. ++...
T Consensus 345 ~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~P~Lv 418 (894)
T COG2909 345 RLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLASTPRLV 418 (894)
T ss_pred chhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhCchHH
Confidence 33778888888888999999998876544 223221 222333444444444332 3333333342 35566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HH
Q 001578 453 KRRGQARAALGESVEAIQDLSKALEFEPN---------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-----KS 518 (1050)
Q Consensus 453 ~~la~~~~~~g~~~eA~~~l~kal~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~-----~~ 518 (1050)
...+.......++.+|..++.++...-+. .+......|.+....|+++.|+++.+.++..-|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 67788888899999999999888765443 13455667888899999999999999999987765 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHcCC--hHHHHHHHHHHH----hhCCCCHH
Q 001578 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLAN--SEKALECLQQVL----YIDKRFSK 586 (1050)
Q Consensus 519 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~~la~~~~~~g~--~~~A~~~l~~al----~~~p~~~~ 586 (1050)
++..+|.+..-.|++++|..+...+.+..... ..+....+.++..+|+ +++....+...- ...|.+..
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 67788999999999999999999998874432 2333455777888883 333333333322 22333333
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCC--H-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 001578 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGI----DPSN--I-ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (1050)
Q Consensus 587 ~~~~la~~~~~~g~~~eAi~~l~~al~~----~p~~--~-~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~ 659 (1050)
.....+.++...-+++.+.......++. .|.. . -+++.++.++...|+.++|...+.....+--+...-..+.
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 4444444444444467766666666554 2322 2 2335899999999999999999999887765442222333
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 001578 660 CLAFYQKEIALYTASKINSEFCWFDIDGD 688 (1050)
Q Consensus 660 ~~~~~~~g~~~~~~~~~~~A~~~l~~a~~ 688 (1050)
+.++.-+...-...|+...|..++.+.+.
T Consensus 659 a~~~~v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 659 AAAYKVKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred HHHHHhhHHHhcccCCHHHHHHHHHhccC
Confidence 34443344444556788888887766443
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.66 E-value=0.024 Score=67.04 Aligned_cols=153 Identities=15% Similarity=0.081 Sum_probs=118.2
Q ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHH--------HHHHHHHH----HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001578 529 SIGEYKKAEEAHLKAIQLDRNFLEAW--------GHLTQFYQ----DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (1050)
Q Consensus 529 ~~g~~~eA~~~l~~al~~~p~~~~~~--------~~la~~~~----~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 596 (1050)
-.|+-+.++..+.++.+. ++-.... +.....+. .....+.|.+++.......|+..-.++..|.++.
T Consensus 200 F~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred cCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 368999999999998773 3221111 11111111 2456788999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 001578 597 GLGQHKKAIKDLSSGLGIDPSN----IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYT 672 (1050)
Q Consensus 597 ~~g~~~eAi~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~ 672 (1050)
..|+.++|++.|++++.....- .-+++.+|.++..++++++|..++.+..+.+.-+ .+...|..|.++..
T Consensus 279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS------ka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS------KAFYAYLAAACLLM 352 (468)
T ss_pred HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH------HHHHHHHHHHHHHh
Confidence 9999999999999998643332 3478899999999999999999999999866443 45677888899988
Q ss_pred hcCH-------HHHHHHHHHhhc
Q 001578 673 ASKI-------NSEFCWFDIDGD 688 (1050)
Q Consensus 673 ~~~~-------~~A~~~l~~a~~ 688 (1050)
.++. ++|..+|.++..
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHH
Confidence 8888 777777766544
No 228
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.19 Score=56.68 Aligned_cols=185 Identities=15% Similarity=0.110 Sum_probs=108.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCC------cHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCC-------C
Q 001578 427 FQRELEAAISDFTEAIQSNPS------AGE--------AWKRRGQARAALGESVEAIQDLSKALEF---EPN-------S 482 (1050)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~p~------~~~--------~~~~la~~~~~~g~~~eA~~~l~kal~~---~p~-------~ 482 (1050)
..|-+++|.++-++++..... ... .+..++.+-.-.|++.+|++....+.+. .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 346677777777777654211 111 2334555666677887777766665543 232 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---------
Q 001578 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--------- 550 (1050)
Q Consensus 483 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~--------- 550 (1050)
+.+...+|......+.++.|...|..+.+..... +.+..++|.+|...|+-+.-.+.++. +.|.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH
Confidence 4466667777777777777777777777664332 23445667777776654443333332 33332
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 001578 551 -LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (1050)
Q Consensus 551 -~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~------~~~~~~~la~~~~~~g~~~eAi~~l~~al~~ 614 (1050)
..+++..|...+.++++.+|...+.+.++.... .+..+..+|.+..-.|+..++.+..+-++.+
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamql 514 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQL 514 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHH
Confidence 345556666666777777777777777665421 1223455666666777777776666665554
No 229
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.60 E-value=0.0034 Score=70.99 Aligned_cols=197 Identities=16% Similarity=0.047 Sum_probs=136.6
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001578 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525 (1050)
Q Consensus 446 p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 525 (1050)
.+....-..+..-..+..+...-++...+|++++|+.+++|..++.- ...-..+|.++|+++++..... +....
T Consensus 165 ~D~~r~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~----lg~s~ 238 (539)
T PF04184_consen 165 TDALRPAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS----LGKSQ 238 (539)
T ss_pred CCccCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh----hchhh
Confidence 33333334555566677889999999999999999999998887753 2344688899999988764321 11111
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHCCCH
Q 001578 526 ALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR--FSKAYHLRGLLLHGLGQH 601 (1050)
Q Consensus 526 ~~~~~g~~~eA~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~ 601 (1050)
.....|..-+ .....+. ...+...+|.+..++|+.++|++.++..++..|. +..++.++..++..++.|
T Consensus 239 ~~~~~g~~~e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 239 FLQHHGHFWE-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY 311 (539)
T ss_pred hhhcccchhh-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence 1112221111 1111111 2455678999999999999999999999988774 456899999999999999
Q ss_pred HHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH-ccC---------------HHHHHHHHHHHHHhcCCCHHH
Q 001578 602 KKAIKDLSSGLGI-DPSNIECLYLRASCYHA-IGE---------------YREAIKDYDAALDLELDSMEK 655 (1050)
Q Consensus 602 ~eAi~~l~~al~~-~p~~~~~~~~la~~~~~-~g~---------------~~eA~~~~~~al~l~p~~~~~ 655 (1050)
.++...+.+.-++ -|..+...|..|.+..+ .++ -..|.+.+.+|++.+|.-+..
T Consensus 312 ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 312 ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 9999999986544 35666666666655433 222 235788999999999987753
No 230
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.55 E-value=0.022 Score=65.14 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 001578 586 KAYHLRGLLLHGL------GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632 (1050)
Q Consensus 586 ~~~~~la~~~~~~------g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~ 632 (1050)
.++..+|...... +..++++..|.+++..+|....+++.+|..+...
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 4566677777677 8889999999999999999888998888877654
No 231
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.012 Score=61.18 Aligned_cols=218 Identities=16% Similarity=0.180 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHH
Q 001578 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL-GESVEAIQDLS 473 (1050)
Q Consensus 395 g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~l~ 473 (1050)
.+|.++..+|+.++..+... ..|+.....++.++|.+-.+|...-.++..+ .+..+-++++.
T Consensus 40 e~fr~~m~YfRAI~~~~E~S-----------------~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~ 102 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKS-----------------PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLD 102 (318)
T ss_pred hhHHHHHHHHHHHHhccccC-----------------HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35666666666655554333 3444555556666666666665555554443 34566666777
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Q 001578 474 KALEFEPNSADILHERGIVNFKFKDFN-AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552 (1050)
Q Consensus 474 kal~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 552 (1050)
+.++-+|.+-++|...-.+....|++. .-+++.+.++..+..+..+|...-.+....+.++.-+.+..+.++.+-.+-.
T Consensus 103 eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS 182 (318)
T KOG0530|consen 103 EIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS 182 (318)
T ss_pred HHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence 777777777777777666666666666 6666777777777777777777777777777777777777777766655544
Q ss_pred HHHHHHHHHHH-cC-----ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CC--CHHHHHHHHHHHH-hcCCCCHHHH
Q 001578 553 AWGHLTQFYQD-LA-----NSEKALECLQQVLYIDKRFSKAYHLRGLLLHG-LG--QHKKAIKDLSSGL-GIDPSNIECL 622 (1050)
Q Consensus 553 ~~~~la~~~~~-~g-----~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~-~g--~~~eAi~~l~~al-~~~p~~~~~~ 622 (1050)
+|...-.+... .| ..+.-+.+..+.+...|++..+|..+.-++.. .| .+.+........+ ......+..+
T Consensus 183 AWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~ll 262 (318)
T KOG0530|consen 183 AWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLL 262 (318)
T ss_pred hhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHH
Confidence 44432111111 11 12334555666666777777777776666654 33 2333333333333 2233344444
Q ss_pred HHHHHHH
Q 001578 623 YLRASCY 629 (1050)
Q Consensus 623 ~~la~~~ 629 (1050)
--+..+|
T Consensus 263 a~l~d~~ 269 (318)
T KOG0530|consen 263 AFLLDLY 269 (318)
T ss_pred HHHHHHH
Confidence 4444444
No 232
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.51 E-value=0.00011 Score=52.25 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=31.2
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Q 001578 92 CDKALQLDPTLLQAYILKGCAFSALGRKEEALS 124 (1050)
Q Consensus 92 ~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~ 124 (1050)
|++||+++|+++.+|+.+|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999963
No 233
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00029 Score=71.77 Aligned_cols=92 Identities=21% Similarity=0.184 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 001578 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465 (1050)
Q Consensus 386 ~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 465 (1050)
..|..++....|..|+.+|.+++..+|..+..+.+.+.|+++..+++.+.....+++++.|+....++.+|.+......|
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34445555555666666666666666665555666666666666666666666666666665555555555555555555
Q ss_pred HHHHHHHHHHHh
Q 001578 466 VEAIQDLSKALE 477 (1050)
Q Consensus 466 ~eA~~~l~kal~ 477 (1050)
++|+..+.++..
T Consensus 95 ~eaI~~Lqra~s 106 (284)
T KOG4642|consen 95 DEAIKVLQRAYS 106 (284)
T ss_pred cHHHHHHHHHHH
Confidence 555555555544
No 234
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.48 E-value=0.0028 Score=69.77 Aligned_cols=136 Identities=10% Similarity=-0.054 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 001578 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD-LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (1050)
Q Consensus 519 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 597 (1050)
+|..+.....+.+..+.|...|.+|++..+....+|...|.+... .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566666777777778888999999886666667888888888666 5566669999999999999988888888888889
Q ss_pred CCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578 598 LGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 598 ~g~~~eAi~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
.++.+.|..+|++++..-+... .+|......-...|+.+.....++++.+..|++..
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 9999999999999988766544 57777888888889999999999999999887543
No 235
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.47 E-value=0.038 Score=66.92 Aligned_cols=262 Identities=15% Similarity=0.036 Sum_probs=187.2
Q ss_pred CcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 001578 379 ISVDFRLSRGIAQVNE-----GKYASAISIFDQILKE-----DPMYPEALIGRGTARAFQR-----ELEAAISDFTEAIQ 443 (1050)
Q Consensus 379 ~~~~~~~~~a~~~~~~-----g~~~~Ai~~~~~al~~-----~p~~~~a~~~la~~~~~~g-----~~~~A~~~~~~al~ 443 (1050)
.+......+|.+++.- .|.+.|+.+|+.+.+. .-.++.+.+.+|.+|.... +++.|+.+|.++-.
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 3466667777777654 5899999999999771 1225668889999998843 77889999999877
Q ss_pred hCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC
Q 001578 444 SNPSAGEAWKRRGQARAALG---ESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKEN 516 (1050)
Q Consensus 444 ~~p~~~~~~~~la~~~~~~g---~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~l~~al~~~p~~ 516 (1050)
.. ++++.+.+|.++..-. +...|.++|..|.... +..+.+.+|.+|.. ..+...|..+++++.+.. +
T Consensus 322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~ 395 (552)
T KOG1550|consen 322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--N 395 (552)
T ss_pred cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--C
Confidence 54 5677788888887765 6789999999998754 77888889988875 358899999999999987 4
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCcHH----HHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHH
Q 001578 517 KSAYTYLGLALSSI-GEYKKAEEAHLKAIQLDRNFLE----AWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKA 587 (1050)
Q Consensus 517 ~~~~~~la~~~~~~-g~~~eA~~~l~~al~~~p~~~~----~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~ 587 (1050)
+.+...++..+..- +.++.+...+....+..-..+. .+......... ..+...+...+.++.. ..+..+
T Consensus 396 ~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a 473 (552)
T KOG1550|consen 396 PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADA 473 (552)
T ss_pred hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHH
Confidence 55555555554433 7777777666655544322211 11111111111 1245566666666543 466788
Q ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCC
Q 001578 588 YHLRGLLLHGL----GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLELDS 652 (1050)
Q Consensus 588 ~~~la~~~~~~----g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~p~~ 652 (1050)
...+|.+|..- .+++.|...|.++.... ....+++|.++.. .. ...|..+|.++.+.+.+.
T Consensus 474 ~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 474 ILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEEDSRA 542 (552)
T ss_pred HhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcCchh
Confidence 88999988764 46999999999998876 8899999999874 23 789999999998876543
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.45 E-value=0.034 Score=62.48 Aligned_cols=118 Identities=13% Similarity=0.027 Sum_probs=67.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCcHH
Q 001578 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAF---QRELEAAISDFTE-AIQSNPSAGE 450 (1050)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~----~p~~~~a~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~ 450 (1050)
.+++....+=..|....+|+.-+++.+.+-.. -++.+.+...+|.++.+ .|+.++|+..+.. .....+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 44555556656666667777777766665544 33455566666766666 6777777777766 3334455666
Q ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 001578 451 AWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497 (1050)
Q Consensus 451 ~~~~la~~~~~~---------g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g 497 (1050)
.+..+|.+|... ...++|+..|.++.+++| +...-.+++.++...|
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAG 273 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcC
Confidence 777777666542 124555555555555554 2222333444444444
No 237
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.43 E-value=0.005 Score=70.06 Aligned_cols=95 Identities=25% Similarity=0.274 Sum_probs=86.1
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 001578 561 YQDLANSEKALECLQQVLYIDKRFS-KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639 (1050)
Q Consensus 561 ~~~~g~~~~A~~~l~~al~~~p~~~-~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 639 (1050)
+...|+...|+.++..|+...|... ....++|.++...|-...|-..+.+++.+....+-.++.+|.+|..+.+.+.|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 4457999999999999999888543 357789999999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHHhcCCCHHH
Q 001578 640 KDYDAALDLELDSMEK 655 (1050)
Q Consensus 640 ~~~~~al~l~p~~~~~ 655 (1050)
+.|+.|++++|+++..
T Consensus 697 ~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPEC 712 (886)
T ss_pred HHHHHHHhcCCCChhh
Confidence 9999999999999873
No 238
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.43 E-value=0.026 Score=65.67 Aligned_cols=299 Identities=18% Similarity=0.116 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH------HHh----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Q 001578 382 DFRLSRGIAQVNEGKYASAISIFDQI------LKE----DPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSN----- 445 (1050)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~Ai~~~~~a------l~~----~p~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~~~----- 445 (1050)
+.|-..|..+....++++|+++|++. +++ .|... ..--..|.-+.+.|+++.|+..|-.+-.+-
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaiea 741 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEA 741 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence 34445566666677777777777643 222 23221 122334566677788888887765542110
Q ss_pred --------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001578 446 --------------------PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505 (1050)
Q Consensus 446 --------------------p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 505 (1050)
......|-.++.-|...|+|+.|.++|.++- .......+|-+.|++..|..+
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHH
Confidence 0011234455666667777777777665542 222334556667777777666
Q ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH------HHHHhCcC-----------------c-HHHHHHHHHH
Q 001578 506 LSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHL------KAIQLDRN-----------------F-LEAWGHLTQF 560 (1050)
Q Consensus 506 l~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~l~------~al~~~p~-----------------~-~~~~~~la~~ 560 (1050)
..++. .|.. ...|...+.-+-..|+|.+|.+.|- ++++.... . .+.+..+|.-
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e 891 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKE 891 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHH
Confidence 65543 2332 3456667777888999999998773 34443211 1 2455678888
Q ss_pred HHHcCChHHHHHHHHHHHhhC------CC-----------------CHH--HHHH---------HHHHHHHCCCHHHHHH
Q 001578 561 YQDLANSEKALECLQQVLYID------KR-----------------FSK--AYHL---------RGLLLHGLGQHKKAIK 606 (1050)
Q Consensus 561 ~~~~g~~~~A~~~l~~al~~~------p~-----------------~~~--~~~~---------la~~~~~~g~~~eAi~ 606 (1050)
|...|+...|...|-++-... .. +.. +.+. ...++-+.|-.++|+.
T Consensus 892 ~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id 971 (1636)
T KOG3616|consen 892 LEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAID 971 (1636)
T ss_pred HHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhh
Confidence 889999999999887763221 10 000 0000 1122233444444443
Q ss_pred HH------HHHHh-----cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhc-
Q 001578 607 DL------SSGLG-----IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTAS- 674 (1050)
Q Consensus 607 ~l------~~al~-----~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~- 674 (1050)
.. +-++. .....++++..++..+...|++++|-+.|-.+++++.-+.. |.......+. ....+.|
T Consensus 972 ~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynit-wcqavpsrfd--~e~ir~gn 1048 (1636)
T KOG3616|consen 972 FAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNIT-WCQAVPSRFD--AEFIRAGN 1048 (1636)
T ss_pred hhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccch-hhhcccchhh--HHHHHcCC
Confidence 21 11111 12234578888999999999999999999999998765432 1111111111 1122334
Q ss_pred CHHHHHHHHHHhhccCCCCHHHH
Q 001578 675 KINSEFCWFDIDGDIDPLFKEYW 697 (1050)
Q Consensus 675 ~~~~A~~~l~~a~~l~p~~~e~w 697 (1050)
+-++|...|- .+.+|....
T Consensus 1049 kpe~av~mfi----~dndwa~ae 1067 (1636)
T KOG3616|consen 1049 KPEEAVEMFI----HDNDWAAAE 1067 (1636)
T ss_pred ChHHHHHHhh----hcccHHHHH
Confidence 7888888873 455666653
No 239
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.43 E-value=0.0038 Score=68.74 Aligned_cols=132 Identities=11% Similarity=0.037 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001578 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK-FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530 (1050)
Q Consensus 452 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 530 (1050)
|..+.....+.+..+.|..+|.+|.+..+....+|...|.+.+. .++.+.|...|+.+++..|.+...|......+...
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 33334444444444555555555543333334444444444333 23333355555555555555555555444555555
Q ss_pred CCHHHHHHHHHHHHHhCcCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 001578 531 GEYKKAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (1050)
Q Consensus 531 g~~~eA~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 583 (1050)
++.+.|...|++++..-+... .+|......-...|+.+....+.+++.+..|.
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 555555555555544433322 34444444444455555555555555554444
No 240
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.42 E-value=0.00021 Score=80.23 Aligned_cols=109 Identities=24% Similarity=0.333 Sum_probs=86.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001578 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (1050)
Q Consensus 384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (1050)
+-..|..++..++|+.|+..|.++++++|+.+..+..++.++.+.+++..|+..+.+|++.+|....+|+..|.+....+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 33456667777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001578 464 ESVEAIQDLSKALEFEPNSADILHERGIV 492 (1050)
Q Consensus 464 ~~~eA~~~l~kal~~~p~~~~~~~~lg~~ 492 (1050)
.+.+|+..|+....+.|+++.+...+..+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 88888888888888888887776655544
No 241
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.42 E-value=0.061 Score=61.42 Aligned_cols=73 Identities=11% Similarity=-0.008 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHc------cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH----------HhcCHHHHHHHH
Q 001578 620 ECLYLRASCYHAI------GEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALY----------TASKINSEFCWF 683 (1050)
Q Consensus 620 ~~~~~la~~~~~~------g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~----------~~~~~~~A~~~l 683 (1050)
.++..+|...... +..+++...|..+++++|+...++...+..+...-.... .......|+..|
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y 332 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGY 332 (352)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHH
Confidence 5667777777777 889999999999999999988877665554444322221 122345678888
Q ss_pred HHhhccCCC
Q 001578 684 DIDGDIDPL 692 (1050)
Q Consensus 684 ~~a~~l~p~ 692 (1050)
-+++.+.+.
T Consensus 333 ~~al~~~~~ 341 (352)
T PF02259_consen 333 LKALSLGSK 341 (352)
T ss_pred HHHHhhCCC
Confidence 888888777
No 242
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.40 E-value=0.36 Score=54.29 Aligned_cols=93 Identities=9% Similarity=-0.049 Sum_probs=66.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HH--------
Q 001578 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG------EA-------- 451 (1050)
Q Consensus 386 ~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~-------- 451 (1050)
.+-...+-.++.+.-...+-..-+..|..+......|...++.+++.+|++.+..-...-.... .+
T Consensus 50 grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~ 129 (549)
T PF07079_consen 50 GRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFF 129 (549)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHH
Confidence 3333444456666666666666667788888888899999999999999998877665422221 11
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001578 452 -WKRRGQARAALGESVEAIQDLSKALEF 478 (1050)
Q Consensus 452 -~~~la~~~~~~g~~~eA~~~l~kal~~ 478 (1050)
-...|.++...|++.++...+++.+..
T Consensus 130 l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 130 LDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 123577888999999999999988764
No 243
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0011 Score=67.85 Aligned_cols=122 Identities=21% Similarity=0.168 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001578 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (1050)
Q Consensus 517 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 596 (1050)
..++..-|+-++..|+|.+|...|..|+..-. .+..+.+-.+. +.++++......+.++++|+.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~----------~L~lkEkP~e~------eW~eLdk~~tpLllNy~QC~L 241 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLR----------NLQLKEKPGEP------EWLELDKMITPLLLNYCQCLL 241 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHH----------HHHhccCCCCh------HHHHHHHhhhHHHHhHHHHHh
Confidence 45677788888888888888888887764311 11111110000 112233334567889999999
Q ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578 597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 597 ~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
..|+|-++++.....+..+|.+..+++.+|.+....=+..+|...|.++++++|.-..
T Consensus 242 ~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 242 KKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 9999999999999999999999999999999999999999999999999999987543
No 244
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.31 E-value=0.012 Score=67.15 Aligned_cols=120 Identities=15% Similarity=0.034 Sum_probs=100.8
Q ss_pred HHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001578 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP--EALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (1050)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (1050)
....+..+.+...+..-+.....+|+..+|..++..++-..|... .+++.+|.++.+.|...+|--.+..|+...|..
T Consensus 203 ~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~ 282 (886)
T KOG4507|consen 203 HEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFF 282 (886)
T ss_pred HHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccc
Confidence 344556777777777777777889999999999999998877653 578899999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001578 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490 (1050)
Q Consensus 449 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg 490 (1050)
..-++.++.++..++++......|..+.+..|......-...
T Consensus 283 t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~ 324 (886)
T KOG4507|consen 283 TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRK 324 (886)
T ss_pred cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHH
Confidence 777999999999999999999999999999997655444433
No 245
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.29 E-value=0.086 Score=59.30 Aligned_cols=116 Identities=10% Similarity=0.025 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HHhCCCCHHHHH
Q 001578 450 EAWKRRGQARAALGESVEAIQDLSKALEF----EPNSADILHERGIVNFK---FKDFNAAVEDLSAC-VKLDKENKSAYT 521 (1050)
Q Consensus 450 ~~~~~la~~~~~~g~~~eA~~~l~kal~~----~p~~~~~~~~lg~~~~~---~g~~~~A~~~l~~a-l~~~p~~~~~~~ 521 (1050)
++...+-..|....+|+.-+.+.+..-.+ -++...+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.+.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34444444555555555555555544443 22344455555555555 55555665555552 233344455555
Q ss_pred HHHHHHHHc---------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC
Q 001578 522 YLGLALSSI---------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566 (1050)
Q Consensus 522 ~la~~~~~~---------g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 566 (1050)
.+|.+|-.. ...++|+..|.++.+++|+. ..-.|++.++...|.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence 555554321 12455666666666665432 222334444444443
No 246
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.23 E-value=0.52 Score=58.15 Aligned_cols=287 Identities=19% Similarity=0.143 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--cH----HHHHHHHHHHHHcCCH
Q 001578 397 YASAISIFDQILKEDPM----YPEALIGRGTARA-FQRELEAAISDFTEAIQSNPS--AG----EAWKRRGQARAALGES 465 (1050)
Q Consensus 397 ~~~Ai~~~~~al~~~p~----~~~a~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~ 465 (1050)
...|+.+++.+++..+- .+.+++.+|.+++ ...+++.|..++++++.+... .. .+...++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 45677777777743222 2456777788777 677888888888888776533 22 2345567777777766
Q ss_pred HHHHHHHHHHHhhCCCC---H-H-HHHHH-HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCCH
Q 001578 466 VEAIQDLSKALEFEPNS---A-D-ILHER-GIVNFKFKDFNAAVEDLSACVKLD--KENKSA----YTYLGLALSSIGEY 533 (1050)
Q Consensus 466 ~eA~~~l~kal~~~p~~---~-~-~~~~l-g~~~~~~g~~~~A~~~l~~al~~~--p~~~~~----~~~la~~~~~~g~~ 533 (1050)
. |+..+++.++..... . . ++..+ ...+...+++..|++.++...... ..++.+ ....+.++...+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 6 888888887765431 1 1 11112 233333478888888888877765 344332 23345566667777
Q ss_pred HHHHHHHHHHHHhCc----------CcHHHHHHHHH--HHHHcCChHHHHHHHHHHHh---h---CC---C---------
Q 001578 534 KKAEEAHLKAIQLDR----------NFLEAWGHLTQ--FYQDLANSEKALECLQQVLY---I---DK---R--------- 583 (1050)
Q Consensus 534 ~eA~~~l~~al~~~p----------~~~~~~~~la~--~~~~~g~~~~A~~~l~~al~---~---~p---~--------- 583 (1050)
+++++.++++..... ....++..+-. ++...|+++.+...+++.-. . .+ .
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 777777777644321 11333433333 34456666666655544321 1 11 0
Q ss_pred ------------C------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCC--------------
Q 001578 584 ------------F------------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-------PSN-------------- 618 (1050)
Q Consensus 584 ------------~------------~~~~~~la~~~~~~g~~~eAi~~l~~al~~~-------p~~-------------- 618 (1050)
. .-+|..-|......+..++|.+++.+++..- +..
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~ 355 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW 355 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH
Confidence 0 1123334556666777778888888776531 110
Q ss_pred -----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 001578 619 -----IECLYLRASCYHAIGEYREAIKDYDAALDLELDSME--KFVLQCLAFYQKEIALYTASKINSEFCWFD 684 (1050)
Q Consensus 619 -----~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~ 684 (1050)
..+++..+.+..-.|++..|......+.......+. ........+|-.|+.+...|+.+.|...|.
T Consensus 356 ~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 356 LRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 024456777888899999999999988876543322 122345778888999999999999999997
No 247
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.21 E-value=0.00064 Score=51.63 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001578 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626 (1050)
Q Consensus 588 ~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la 626 (1050)
+..+|.+|..+|++++|+..|+++++.+|+++.++..+|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 334444444444444444444444444444444444333
No 248
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.21 E-value=0.14 Score=62.20 Aligned_cols=275 Identities=17% Similarity=0.063 Sum_probs=189.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcC--
Q 001578 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQ-----RELEAAISDFTEAIQS-----NPSAGEAWKRRGQARAALG-- 463 (1050)
Q Consensus 396 ~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 463 (1050)
....|..+++.+.+. .+..+...+|.++..- .+.+.|+.+|..+... ....+.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888877654 4677888888888764 5899999999999771 1124567888999998853
Q ss_pred ---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Q 001578 464 ---ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEY 533 (1050)
Q Consensus 464 ---~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~ 533 (1050)
++..|+.+|.++-... ++++.+.+|.++..-. ++..|.++|..|... .+..+.+.+|.+|.. ..+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence 7788999999998875 5677888898888765 678999999998765 467888899988875 3578
Q ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHH----CCCHHHH
Q 001578 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALECLQQVLYIDKRFSK----AYHLRGLLLHG----LGQHKKA 604 (1050)
Q Consensus 534 ~eA~~~l~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~l~~al~~~p~~~~----~~~~la~~~~~----~g~~~eA 604 (1050)
..|..++.++.+.. .+.+...++..+..- ++++.+.-.+....+..-..+. .+......... ..+...+
T Consensus 381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 99999999999887 445555555544332 7777776666555444222111 11111111111 1245666
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH----hcCH
Q 001578 605 IKDLSSGLGIDPSNIECLYLRASCYHAI----GEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYT----ASKI 676 (1050)
Q Consensus 605 i~~l~~al~~~p~~~~~~~~la~~~~~~----g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~----~~~~ 676 (1050)
...+.++.. ..+..+...+|.+|..- .+++.|...|.++.... . ...+..|..+.. .. +
T Consensus 459 ~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~-------~~~~nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 459 FSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---A-------QALFNLGYMHEHGEGIKV-L 525 (552)
T ss_pred HHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---h-------HHHhhhhhHHhcCcCcch-h
Confidence 677766653 45678888999988765 35999999999998876 3 334444444321 22 6
Q ss_pred HHHHHHHHHhhccCC
Q 001578 677 NSEFCWFDIDGDIDP 691 (1050)
Q Consensus 677 ~~A~~~l~~a~~l~p 691 (1050)
..|..+++++.+.+.
T Consensus 526 ~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 526 HLAKRYYDQASEEDS 540 (552)
T ss_pred HHHHHHHHHHHhcCc
Confidence 777777777765443
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.21 E-value=0.0007 Score=51.42 Aligned_cols=43 Identities=23% Similarity=0.145 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 001578 70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112 (1050)
Q Consensus 70 ~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~ 112 (1050)
..+..+|.+|..+|++++|++.++++++.+|++..++..+|.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 4577889999999999999999999999999999999888753
No 250
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.14 E-value=0.00061 Score=48.39 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 001578 71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102 (1050)
Q Consensus 71 ~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~ 102 (1050)
.++++|.+|+.+|++++|+..|++||+++|++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 46677777777777777777777777777763
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.018 Score=61.36 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=101.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHH
Q 001578 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQA 458 (1050)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~ 458 (1050)
..+.-+..+......|++.+|...|..++...|++.++...++.++...|+.+.|...+...-...... ..........
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 345567778889999999999999999999999999999999999999999999988876642222111 1111111122
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC
Q 001578 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIG 531 (1050)
Q Consensus 459 ~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g 531 (1050)
+.+.....+. ..+++.+..+|++.++.+.+|..+...|+++.|++.+-..++.+.. +..+...+-.++...|
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2222222221 3345556678888888888888888888888888888777776543 2334444444444444
No 252
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.13 E-value=0.83 Score=56.39 Aligned_cols=263 Identities=12% Similarity=0.038 Sum_probs=174.9
Q ss_pred cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---c-
Q 001578 380 SVDFRLSRGIAQV-NEGKYASAISIFDQILKEDPM--YP----EALIGRGTARAFQRELEAAISDFTEAIQSNPS---A- 448 (1050)
Q Consensus 380 ~~~~~~~~a~~~~-~~g~~~~Ai~~~~~al~~~p~--~~----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~- 448 (1050)
.+..++.+|.+++ ...+++.|..++++++..... .. .+.+.++.++.+.+... |...++++++.... .
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4668889999988 678999999999999876533 22 34556788888888777 99999999987554 1
Q ss_pred HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCC--CCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------
Q 001578 449 GEAWKRR--GQARAALGESVEAIQDLSKALEFEP--NSAD----ILHERGIVNFKFKDFNAAVEDLSACVKLDK------ 514 (1050)
Q Consensus 449 ~~~~~~l--a~~~~~~g~~~eA~~~l~kal~~~p--~~~~----~~~~lg~~~~~~g~~~~A~~~l~~al~~~p------ 514 (1050)
....+.+ ...+...+++..|++.++....... .++. +....+.++...+..+++++.++++.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 2222222 3333334799999999999988763 4443 333446667778888889888888754322
Q ss_pred C----CHHHHHHHHH--HHHHcCCHHHHHHHHHHH---HHh---Cc---C---------------------c--------
Q 001578 515 E----NKSAYTYLGL--ALSSIGEYKKAEEAHLKA---IQL---DR---N---------------------F-------- 550 (1050)
Q Consensus 515 ~----~~~~~~~la~--~~~~~g~~~eA~~~l~~a---l~~---~p---~---------------------~-------- 550 (1050)
. ...++..+-. ++...|+++.+...+++. +.. .+ . .
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~ 296 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK 296 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence 1 1233333332 455677766666554443 221 11 0 0
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----------C----------------HHHHHHHHHHHHHCCC
Q 001578 551 ----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR----------F----------------SKAYHLRGLLLHGLGQ 600 (1050)
Q Consensus 551 ----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~----------~----------------~~~~~~la~~~~~~g~ 600 (1050)
.-++..-|......+..++|.+++++++..-.+ . .......+.+..-.++
T Consensus 297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 112233345566667777888888888753111 0 1134556777788999
Q ss_pred HHHHHHHHHHHHhcC---CC------CHHHHHHHHHHHHHccCHHHHHHHHH
Q 001578 601 HKKAIKDLSSGLGID---PS------NIECLYLRASCYHAIGEYREAIKDYD 643 (1050)
Q Consensus 601 ~~eAi~~l~~al~~~---p~------~~~~~~~la~~~~~~g~~~eA~~~~~ 643 (1050)
+..|......+.... |. .+..++..|..+...|+.+.|..+|.
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 999999888776542 22 36789999999999999999999998
No 253
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.13 E-value=0.27 Score=54.12 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 001578 650 LDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687 (1050)
Q Consensus 650 p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~ 687 (1050)
|-...+.........+.|...|..++|..|..+|+.++
T Consensus 236 ~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 236 QLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 44444444444567778999999999999999998665
No 254
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.12 Score=62.89 Aligned_cols=220 Identities=15% Similarity=0.108 Sum_probs=108.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 001578 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465 (1050)
Q Consensus 386 ~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 465 (1050)
..|.+....+-|++|..+|.+-- -+..+... +....+..+.|.++.++. +.+.+|..+|.+....|..
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~----~n~~A~~V---Lie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFD----MNVSAIQV---LIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhc----ccHHHHHH---HHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCch
Confidence 34667777888889988887631 11111111 111234444444444432 3345555555555555555
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCCH
Q 001578 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD----------------------------KENK 517 (1050)
Q Consensus 466 ~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~----------------------------p~~~ 517 (1050)
.+|++.|-++ +++..|.....+..+.|.|++-+.++..+-+.. |+.+
T Consensus 1121 ~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A 1195 (1666)
T KOG0985|consen 1121 KDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVA 1195 (1666)
T ss_pred HHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCch
Confidence 5555555433 344455555555555555555555554443332 2211
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---------------
Q 001578 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--------------- 582 (1050)
Q Consensus 518 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--------------- 582 (1050)
-....|.-++..|.|+.|.-+|.. ..-|..++..+..+|+|..|.+..++|-....
T Consensus 1196 -~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1196 -NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred -hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhh
Confidence 122334444445555554444432 23345566666666777777666666522100
Q ss_pred ----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 001578 583 ----------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (1050)
Q Consensus 583 ----------~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~ 631 (1050)
-+++-+-.+...|...|-+++-+..++.++-+...+...+..+|.+|.+
T Consensus 1267 lAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1267 LAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 0112233444455555555555555555555555444555555555443
No 255
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.08 E-value=0.1 Score=61.08 Aligned_cols=183 Identities=16% Similarity=0.078 Sum_probs=93.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChH
Q 001578 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (1050)
Q Consensus 489 lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 568 (1050)
.|.-+...|+++.|+.+|-++-- ...-..+.....++.+|+..++..-... .....|-.++.-|...|+|+
T Consensus 712 wg~hl~~~~q~daainhfiea~~--------~~kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHH
Confidence 34445555555555555543311 1111122233344444444444322211 11233445667777778888
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHH----
Q 001578 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYD---- 643 (1050)
Q Consensus 569 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~---- 643 (1050)
.|.++|.++- ........|-+.|++.+|.+.-.++.. |.. ...|...+.-+.+.|+|.+|.+.|-
T Consensus 783 ~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~ 852 (1636)
T KOG3616|consen 783 IAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE 852 (1636)
T ss_pred HHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC
Confidence 8887776642 222334456677788877777666543 332 3455566666666777666665552
Q ss_pred --HHHHhcCCC---HHH--H------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC
Q 001578 644 --AALDLELDS---MEK--F------VLQCLAFYQKEIALYTASKINSEFCWFDIDGDID 690 (1050)
Q Consensus 644 --~al~l~p~~---~~~--~------~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~ 690 (1050)
+++++.... .+. . -.+.......+..+...|++..|...|-+++++.
T Consensus 853 p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~k 912 (1636)
T KOG3616|consen 853 PDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFK 912 (1636)
T ss_pred chHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHH
Confidence 222221100 000 0 0011334445666677788888888877766543
No 256
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.08 E-value=1 Score=52.86 Aligned_cols=258 Identities=10% Similarity=0.058 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 001578 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR-AALGESVEAIQDLSKA 475 (1050)
Q Consensus 397 ~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~eA~~~l~ka 475 (1050)
.+.+...|...|...|.....|...|..-.+.|..+.+.+.|++++.--|...+.|..+-... ...|+.+.-...|++|
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 366777788888899999999999999999999999999999999999998888776544433 3457778888888988
Q ss_pred HhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH----------------------HHHHHHHH--
Q 001578 476 LEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY----------------------TYLGLALS-- 528 (1050)
Q Consensus 476 l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~----------------------~~la~~~~-- 528 (1050)
......+ ...|-.+-.....++++..-...|++.++.--.....+ ..+..--.
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~ 220 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER 220 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh
Confidence 8876543 23444444444556666666666666655311110000 00000000
Q ss_pred ----------------------HcCCHHHHHHHHHHHHHh-----------------------------Cc---CcHHHH
Q 001578 529 ----------------------SIGEYKKAEEAHLKAIQL-----------------------------DR---NFLEAW 554 (1050)
Q Consensus 529 ----------------------~~g~~~eA~~~l~~al~~-----------------------------~p---~~~~~~ 554 (1050)
..+.++++...+.+...+ .| .....|
T Consensus 221 ~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw 300 (577)
T KOG1258|consen 221 SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNW 300 (577)
T ss_pred hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHH
Confidence 001112222221111111 11 123455
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Q 001578 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-PSNIECLYLRASCYHAIG 633 (1050)
Q Consensus 555 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~-p~~~~~~~~la~~~~~~g 633 (1050)
..........|+++...-.|++++.-.....+.|...+......|+.+-|-..+.++.+.. |..+..+..-+..-...|
T Consensus 301 ~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~ 380 (577)
T KOG1258|consen 301 RYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNG 380 (577)
T ss_pred HHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhc
Confidence 5666666778888888888888887777778888888888888888888888888777764 566777777788888888
Q ss_pred CHHHHHHHHHHHHHhcCCCHH
Q 001578 634 EYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 634 ~~~eA~~~~~~al~l~p~~~~ 654 (1050)
++..|...|++..+-.|+..+
T Consensus 381 n~~~A~~~lq~i~~e~pg~v~ 401 (577)
T KOG1258|consen 381 NFDDAKVILQRIESEYPGLVE 401 (577)
T ss_pred cHHHHHHHHHHHHhhCCchhh
Confidence 888888888888887777655
No 257
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.07 E-value=0.64 Score=56.79 Aligned_cols=233 Identities=15% Similarity=0.029 Sum_probs=156.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--
Q 001578 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-- 448 (1050)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 448 (1050)
++...+..|.......++.+|..++.++...-+. .+......|.+....|++++|++..+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4667788899999999999999999988765433 13455677888999999999999999999987765
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHH--HHHHHHH----HHhC
Q 001578 449 ---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAA--VEDLSAC----VKLD 513 (1050)
Q Consensus 449 ---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~------~~~~~~lg~~~~~~g~~~~A--~~~l~~a----l~~~ 513 (1050)
..++..+|.+..-.|++++|..+...+.+..... ..+....+.++..+|+...| ...+... +...
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 3467788999999999999999999988874321 23445567788888843333 3333222 2223
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cCc--H-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--
Q 001578 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD----RNF--L-EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-- 584 (1050)
Q Consensus 514 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~----p~~--~-~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-- 584 (1050)
|-........+.++...-+++.+.......++.. |.. . -+++.++.++...|++++|...+........+.
T Consensus 574 ~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 574 PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 3333333333333333333666666555555542 222 2 223588999999999999999998887653322
Q ss_pred ---H--HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001578 585 ---S--KAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (1050)
Q Consensus 585 ---~--~~~~~la~~~~~~g~~~eAi~~l~~al 612 (1050)
. .++.........+|++.+|.....+..
T Consensus 654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred CchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 1 112222333456889998888887743
No 258
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.02 E-value=0.00061 Score=48.40 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=20.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 001578 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639 (1050)
Q Consensus 608 l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 639 (1050)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666664
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.01 E-value=0.16 Score=60.11 Aligned_cols=176 Identities=15% Similarity=0.029 Sum_probs=123.8
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHH----HcCCHHHHHHH
Q 001578 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSA------YTYLGLALS----SIGEYKKAEEA 539 (1050)
Q Consensus 471 ~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~-~~~------~~~la~~~~----~~g~~~eA~~~ 539 (1050)
.|.-++.+-|.. ...+-.+.--.|+-+.++..+.++.+...-. +-+ |+.....+. .....+.|.+.
T Consensus 179 ~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~l 255 (468)
T PF10300_consen 179 LFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEEL 255 (468)
T ss_pred HHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHH
Confidence 344445554422 2223333334588888888888877632111 111 111111111 24567889999
Q ss_pred HHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 001578 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (1050)
Q Consensus 540 l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~eAi~~l~~al~~~ 615 (1050)
+....+..|+..-..+..|+++...|+.++|++.|++++.....- .-.++.+|.++..+.+|++|..++.+..+.+
T Consensus 256 L~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 256 LEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999988543322 3457889999999999999999999999876
Q ss_pred CCC-HHHHHHHHHHHHHccCH-------HHHHHHHHHHHHhc
Q 001578 616 PSN-IECLYLRASCYHAIGEY-------REAIKDYDAALDLE 649 (1050)
Q Consensus 616 p~~-~~~~~~la~~~~~~g~~-------~eA~~~~~~al~l~ 649 (1050)
.-. .-..|..|.|+...|+. ++|.+.|.++-.+.
T Consensus 336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 543 44567788999999999 77777777765543
No 260
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.95 E-value=0.18 Score=57.71 Aligned_cols=152 Identities=13% Similarity=-0.023 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-HHHcCChHHHHHHHHH
Q 001578 499 FNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQDLANSEKALECLQQ 576 (1050)
Q Consensus 499 ~~~A~~~l~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~l~~ 576 (1050)
++..-.++.+++.+...+. -++..+-....+..-.+.|...|.+|-+.......++..-|.+ |...++.+-|...|+-
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 4444445555544432222 2233333333333444555555555544332222222222221 3345555555555555
Q ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC
Q 001578 577 VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--DPS-NIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (1050)
Q Consensus 577 al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~--~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 650 (1050)
.+...++.+..-......+...++-..|...|++++.. .++ ..+.|..+-..-..-|+...+++.-++-....|
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 55555555555555555555555555555555555554 222 123444444444455555555555554444444
No 261
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.049 Score=58.17 Aligned_cols=149 Identities=18% Similarity=0.137 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH--HH
Q 001578 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG--IV 492 (1050)
Q Consensus 415 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg--~~ 492 (1050)
.+.-+..+.-....|++.+|...|..+++..|++.++...++.+|...|+.+.|...+...-...... ......+ ..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~l 212 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHH
Confidence 44556667777888999999999999999999999999999999999999999988876542222111 1111111 22
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHcC
Q 001578 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLA 565 (1050)
Q Consensus 493 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~--~~~~~~la~~~~~~g 565 (1050)
+.+.....+. ..+.+.+..+|++..+.+.+|..+...|+.++|.+.+-..+..+... ..+...+-.++...|
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2222222221 23445566688888888888888888888888888887777765432 333444444444444
No 262
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.91 E-value=0.0015 Score=46.33 Aligned_cols=32 Identities=38% Similarity=0.728 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (1050)
Q Consensus 620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 651 (1050)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46677777777777777777777777777775
No 263
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.91 E-value=0.0021 Score=45.54 Aligned_cols=33 Identities=33% Similarity=0.672 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 001578 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (1050)
Q Consensus 620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 652 (1050)
.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 566777777777777777777777777777764
No 264
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0065 Score=65.09 Aligned_cols=101 Identities=18% Similarity=0.251 Sum_probs=85.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001578 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (1050)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 455 (1050)
.+..+-..|..|+...+|..|+..|.+.|+..-.+ +..|.++|.+.+..|+|..|+..+.+++.++|.+..++++-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 35667778999999999999999999999865443 45678899999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC
Q 001578 456 GQARAALGESVEAIQDLSKALEFEP 480 (1050)
Q Consensus 456 a~~~~~~g~~~eA~~~l~kal~~~p 480 (1050)
|.|++.+.++.+|..+.+..+.++.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999888866543
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.88 E-value=0.69 Score=50.92 Aligned_cols=122 Identities=12% Similarity=0.009 Sum_probs=72.2
Q ss_pred HHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC----CC---c-------
Q 001578 392 VNEGKYASAISIFDQILKED----PMY----PEALIGRGTARAFQR-ELEAAISDFTEAIQSN----PS---A------- 448 (1050)
Q Consensus 392 ~~~g~~~~Ai~~~~~al~~~----p~~----~~a~~~la~~~~~~g-~~~~A~~~~~~al~~~----p~---~------- 448 (1050)
..+|+++.|..++.++-... |+. ...++..|......+ +++.|..+++++.++- +. .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888876543 222 345666777777777 8888888888777662 11 0
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001578 449 GEAWKRRGQARAALGESV---EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513 (1050)
Q Consensus 449 ~~~~~~la~~~~~~g~~~---eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~ 513 (1050)
..++..++.+|...+.++ +|...++.+-...|+.+.++...-.++...++.+++.+.+.+++...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 224555666666655433 34444444444555555555444444444566666666666666543
No 266
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0021 Score=69.65 Aligned_cols=118 Identities=14% Similarity=0.047 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-----------CC---------cHHHHHHHHHHHHhhCHHHHHH
Q 001578 31 SVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-----------YE---------IQDICNRAFCYSQLELHKHVIR 90 (1050)
Q Consensus 31 ~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~-----------~~---------~~~~~nra~~~~~~~~~~~Ai~ 90 (1050)
..+......|..+++.|++++|+.|..-|.++.+.. ++ ...+.|.+.+-++++.+..|+.
T Consensus 217 ~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~ 296 (372)
T KOG0546|consen 217 KALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARF 296 (372)
T ss_pred hhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCccee
Confidence 334445556677889999999999999999987442 11 1225688999999999999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHH
Q 001578 91 DCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEE 148 (1050)
Q Consensus 91 ~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~ 148 (1050)
.+..++..++...++|+++|+++..+.++++|++.++.+....|......+.+.....
T Consensus 297 ~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 297 RTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred ccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999988877666554433
No 267
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.73 E-value=0.0027 Score=44.88 Aligned_cols=32 Identities=31% Similarity=0.305 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 001578 71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102 (1050)
Q Consensus 71 ~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~ 102 (1050)
.++.+|.+|+++|++++|+..+++++.++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 35556666666666666666666666666653
No 268
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.70 E-value=0.35 Score=53.67 Aligned_cols=189 Identities=20% Similarity=0.127 Sum_probs=99.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCC
Q 001578 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL----GESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKD 498 (1050)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~----~g~ 498 (1050)
..+++..|...+..+-.. .+......++.+|..- .+..+|..+|+.+.+ ..++...+.+|.+|.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccC
Confidence 456667777776666542 2224555555555543 345556666663332 2345555556665554 335
Q ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001578 499 FNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (1050)
Q Consensus 499 ~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 577 (1050)
+.+|..+|+++.+..-.. ..+.+.++.++..-. ...+. ..+...|...|.++
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~~~~--------------------------~~~~~~A~~~~~~a 181 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QALAV--------------------------AYDDKKALYLYRKA 181 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hhhcc--------------------------cHHHHhHHHHHHHH
Confidence 555555555555543222 122333443333321 00000 00123566666665
Q ss_pred HhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---------------CHHHH
Q 001578 578 LYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG---------------EYREA 638 (1050)
Q Consensus 578 l~~~p~~~~~~~~la~~~~~----~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g---------------~~~eA 638 (1050)
.... ++.+...+|.+|.. ..++.+|..+|.++.+... ....+.++ ++...| +...|
T Consensus 182 a~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a 256 (292)
T COG0790 182 AELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQA 256 (292)
T ss_pred HHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHH
Confidence 5443 56677777766654 3367777777777777655 66777777 555555 55556
Q ss_pred HHHHHHHHHhcCC
Q 001578 639 IKDYDAALDLELD 651 (1050)
Q Consensus 639 ~~~~~~al~l~p~ 651 (1050)
...+..+....+.
T Consensus 257 ~~~~~~~~~~~~~ 269 (292)
T COG0790 257 LEWLQKACELGFD 269 (292)
T ss_pred HHHHHHHHHcCCh
Confidence 6666655555443
No 269
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.67 E-value=0.63 Score=51.62 Aligned_cols=169 Identities=20% Similarity=0.081 Sum_probs=113.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--
Q 001578 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ----RELEAAISDFTEAIQSNPSAGEAWKRRGQARAA-- 461 (1050)
Q Consensus 388 a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 461 (1050)
+......+++..|...+..+-.. .++.+...++.+|... .+..+|..+|..+ ....++.+.+.+|.+|..
T Consensus 48 ~~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~ 123 (292)
T COG0790 48 GAGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGR 123 (292)
T ss_pred cccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCC
Confidence 34445678999999999988762 3347888888888764 4688899999954 446678889999999987
Q ss_pred --cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q 001578 462 --LGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFK-------DFNAAVEDLSACVKLDKENKSAYTYLGLALSS-- 529 (1050)
Q Consensus 462 --~g~~~eA~~~l~kal~~~p~~-~~~~~~lg~~~~~~g-------~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~-- 529 (1050)
..+..+|..+|+++.+..-.. ....+.+|.+|..-. +...|+..|.++.... +..+...+|.+|..
T Consensus 124 gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~ 201 (292)
T COG0790 124 GVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGL 201 (292)
T ss_pred CcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCC
Confidence 459999999999999886433 344778888776642 2225666666665544 45555566655543
Q ss_pred --cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC
Q 001578 530 --IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (1050)
Q Consensus 530 --~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g 565 (1050)
..++.+|..+|.++.+... ....+.++ ++...|
T Consensus 202 Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 2355666666666655544 55555555 444333
No 270
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.65 E-value=0.04 Score=54.20 Aligned_cols=113 Identities=22% Similarity=0.171 Sum_probs=73.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 001578 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS-EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601 (1050)
Q Consensus 523 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 601 (1050)
.|......++.+.++..+.+++.+.....-.-.. ...+ ......++.. ...+...++..+...|++
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLREL------YLDALERLAEALLEAGDY 78 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCH
Confidence 3445556677777777777777765332100000 0111 1111222221 134566788888999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (1050)
Q Consensus 602 ~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 648 (1050)
++|+..+++++..+|.+..++..+..+|...|+..+|+..|++....
T Consensus 79 ~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 79 EEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887553
No 271
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.63 E-value=0.1 Score=52.44 Aligned_cols=119 Identities=22% Similarity=0.089 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhCcCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHH
Q 001578 535 KAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDL 608 (1050)
Q Consensus 535 eA~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eAi~~l 608 (1050)
+.....++....++... -+...++..+.+.+++++|+..++.++....+. .-+-.++|.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44445555555554443 334567888999999999999999988654432 345678899999999999999988
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
....... -.+..-...|.++...|+.++|+..|+++++.+++.+.
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 7543211 12344667899999999999999999999999866554
No 272
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.60 E-value=0.053 Score=49.45 Aligned_cols=89 Identities=19% Similarity=0.174 Sum_probs=70.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcc---CCc----------HHHHHHHHHHHHhhCHHHHHHHHHHHH-------HhCC-
Q 001578 42 ELAKLCSLRNWSKAIRILDSLLAQS---YEI----------QDICNRAFCYSQLELHKHVIRDCDKAL-------QLDP- 100 (1050)
Q Consensus 42 ~~~~~~~~~~~~~Ai~~y~~ai~~~---~~~----------~~~~nra~~~~~~~~~~~Ai~~~~~Al-------~l~P- 100 (1050)
++-+-+..|-|++|..-|.+|++.. |.. -++..++.++..+|+|++++...++|| +++.
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 4556678899999999999999876 221 225678889999999999999999988 3443
Q ss_pred ---CChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578 101 ---TLLQAYILKGCAFSALGRKEEALSVWEKGY 130 (1050)
Q Consensus 101 ---~~~~a~~~~g~~~~~lg~~~~A~~~~~~al 130 (1050)
.++.+.+.+|.++..+|+.++|+..|+.+-
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 357799999999999999999999999994
No 273
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.21 Score=60.92 Aligned_cols=211 Identities=19% Similarity=0.127 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (1050)
+..|..+|.+.++.|...+|++.|-++ +++..|.....+..+.|.|++-+.++.-|-+... .+.+-..+..+|.
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAYA 1177 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHHH
Confidence 444444455555555555555444433 3344444444444444555554444444333211 1111122222333
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001578 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540 (1050)
Q Consensus 461 ~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 540 (1050)
+.++..+-.+.+ ..|+.+. .-..|.-++..+.|+.|.-+|.. ..-+..++..+..+|+|..|....
T Consensus 1178 kt~rl~elE~fi-----~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1178 KTNRLTELEEFI-----AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HhchHHHHHHHh-----cCCCchh-HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 333333322211 1233322 23456666677777777666654 344667888888888888888877
Q ss_pred HHHHHhCc-------------------------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001578 541 LKAIQLDR-------------------------NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595 (1050)
Q Consensus 541 ~~al~~~p-------------------------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 595 (1050)
++|-.... -+++-+-.+...|...|-+++-+..++.++.+...+-..+..+|.+|
T Consensus 1244 RKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1244 RKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILY 1323 (1666)
T ss_pred hhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 77633210 01344456777889999999999999999988877777788888887
Q ss_pred HHCCCHHHHHHHHHHHH
Q 001578 596 HGLGQHKKAIKDLSSGL 612 (1050)
Q Consensus 596 ~~~g~~~eAi~~l~~al 612 (1050)
.+- ++++-.++++-..
T Consensus 1324 sky-kp~km~EHl~LFw 1339 (1666)
T KOG0985|consen 1324 SKY-KPEKMMEHLKLFW 1339 (1666)
T ss_pred Hhc-CHHHHHHHHHHHH
Confidence 654 4666666665443
No 274
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.53 E-value=0.0021 Score=69.21 Aligned_cols=95 Identities=27% Similarity=0.384 Sum_probs=83.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 001578 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465 (1050)
Q Consensus 386 ~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 465 (1050)
..+...+..|.+++|++.|..++.++|.....+..++.++..+++...|+..+..++.++|+....|-..+.+...+|++
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 34556778888999999999999999999999999999999999999999999999999999988888889999999999
Q ss_pred HHHHHHHHHHHhhCC
Q 001578 466 VEAIQDLSKALEFEP 480 (1050)
Q Consensus 466 ~eA~~~l~kal~~~p 480 (1050)
++|..++..+.+++-
T Consensus 199 e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999888754
No 275
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.41 E-value=0.069 Score=52.47 Aligned_cols=116 Identities=16% Similarity=0.077 Sum_probs=68.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001578 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (1050)
Q Consensus 384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (1050)
+...|......|+...++..+++++.......-.-..- ..=.......+... ...+...++..+...|
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~ 76 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLREL------YLDALERLAEALLEAG 76 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhcc
Confidence 34456666778889999999999987653321000000 00011111122221 2345556777777788
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511 (1050)
Q Consensus 464 ~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 511 (1050)
++++|+..+++++..+|.+..++..+..+|...|+..+|+..|+++..
T Consensus 77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888887777654
No 276
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.18 E-value=0.019 Score=68.64 Aligned_cols=123 Identities=21% Similarity=0.258 Sum_probs=104.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-----cHHHHHHHHHHHHh--hCHHHHHHHHHHHHHhC
Q 001578 27 VRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-----IQDICNRAFCYSQL--ELHKHVIRDCDKALQLD 99 (1050)
Q Consensus 27 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~~-----~~~~~nra~~~~~~--~~~~~Ai~~~~~Al~l~ 99 (1050)
..+..++..+...+.++++.|++++|..|.--|..++...|. ...+.|.+.||..+ ++|.+++.+|+-|+...
T Consensus 44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~ 123 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQ 123 (748)
T ss_pred cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhcc
Confidence 567788889999999999999999999999999998887742 23378899988865 59999999999999999
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHH
Q 001578 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEEL 149 (1050)
Q Consensus 100 P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~ 149 (1050)
|...++++.++.+|..+++++-|++++.-.....|..+.....+.++.-.
T Consensus 124 p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~l 173 (748)
T KOG4151|consen 124 PRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGL 173 (748)
T ss_pred chHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999888888888886665544444433
No 277
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.17 E-value=0.29 Score=55.02 Aligned_cols=124 Identities=12% Similarity=-0.053 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHH
Q 001578 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA---IGEYREAIKDYDA 644 (1050)
Q Consensus 568 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~---~g~~~eA~~~~~~ 644 (1050)
+.-+.+|++|++.+|++...+..+-.+..+..+.++...-+++++..+|++...|..+-..... .-.+......|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 4455666666666776666666666666666666666666777777777666665544333322 2235555555555
Q ss_pred HHHhcCC-----------CHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCC
Q 001578 645 ALDLELD-----------SMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDP 691 (1050)
Q Consensus 645 al~l~p~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p 691 (1050)
++..-.. -+..-......+.+....+...|..+.|+..++-.++++=
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 5543211 1122223344566667777889999999999988777653
No 278
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.13 E-value=0.25 Score=49.72 Aligned_cols=97 Identities=20% Similarity=0.098 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001578 452 WKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (1050)
Q Consensus 452 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 528 (1050)
-..+|..+...|++++|+..++.++....+. .-+-..++.+...+|.+++|+..+...... .-.+......|.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHH
Confidence 3456667777777777777777776543322 234556777777777777777766543211 001223445677777
Q ss_pred HcCCHHHHHHHHHHHHHhCcC
Q 001578 529 SIGEYKKAEEAHLKAIQLDRN 549 (1050)
Q Consensus 529 ~~g~~~eA~~~l~~al~~~p~ 549 (1050)
..|+-++|...|.++++..++
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 171 AKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HcCchHHHHHHHHHHHHccCC
Confidence 777777777777777777643
No 279
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.13 E-value=0.011 Score=41.81 Aligned_cols=32 Identities=34% Similarity=0.682 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (1050)
Q Consensus 620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 651 (1050)
.+++.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777788888888888888888888887774
No 280
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.12 E-value=0.22 Score=52.06 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001578 429 RELEAAISDFTEAIQSNPSAG----EAWKRRGQARAALGESVEAIQDLSKALE 477 (1050)
Q Consensus 429 g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~l~kal~ 477 (1050)
.+.++|+..|++++++.+... .++..+..+++.++++++-++.|.+.+.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 467777777777777776543 3555666677777777777777766654
No 281
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.11 E-value=2.7 Score=56.74 Aligned_cols=303 Identities=14% Similarity=0.096 Sum_probs=173.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHcCCH
Q 001578 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG-QARAALGES 465 (1050)
Q Consensus 387 ~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~~ 465 (1050)
+-......|++..|..+|++++..+|+....+...-...+..|.+...+...+-.....++...-++.++ .+....+++
T Consensus 1455 qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1455 QILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcch
Confidence 3444556789999999999999998888777777777777778888887776665554444444333332 233555555
Q ss_pred HHHHHHHH-------------H-HHhhCCCCHHHH-HHHHHHH----------HHcCCHHHHHHHHHHHHHh--------
Q 001578 466 VEAIQDLS-------------K-ALEFEPNSADIL-HERGIVN----------FKFKDFNAAVEDLSACVKL-------- 512 (1050)
Q Consensus 466 ~eA~~~l~-------------k-al~~~p~~~~~~-~~lg~~~----------~~~g~~~~A~~~l~~al~~-------- 512 (1050)
+.-..++. + .+.....+.-.. ..+...- ...|-|..+.++.-++..+
T Consensus 1535 D~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~ 1614 (2382)
T KOG0890|consen 1535 DLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIE 1614 (2382)
T ss_pred hhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444422 0 011111111100 0110000 0111222333222222110
Q ss_pred -----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---Cc----CcHHHHHHHHHHHHHcCChHHHHHHHH
Q 001578 513 -----DKEN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQL---DR----NFLEAWGHLTQFYQDLANSEKALECLQ 575 (1050)
Q Consensus 513 -----~p~~-----~~~~~~la~~~~~~g~~~eA~~~l~~al~~---~p----~~~~~~~~la~~~~~~g~~~~A~~~l~ 575 (1050)
.+++ ..-|.+....-....+..+-+-.+++++-. +| ...+.|...|++....|.++.|..++-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 1111 122222222222222344445555554322 22 337899999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC----------C------HHHHHHHHHHHHHccCH--H
Q 001578 576 QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-PS----------N------IECLYLRASCYHAIGEY--R 636 (1050)
Q Consensus 576 ~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~-p~----------~------~~~~~~la~~~~~~g~~--~ 636 (1050)
+|.+.. -+.++...|..+...|+...|+..+++.++.+ |+ . ..+.+.++.-....|++ .
T Consensus 1695 ~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~ 1772 (2382)
T KOG0890|consen 1695 NAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESK 1772 (2382)
T ss_pred hhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHH
Confidence 988776 57899999999999999999999999999653 22 1 12344555555666664 3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH------HHHHhcCHHH---HHHHHHHhhccCCC
Q 001578 637 EAIKDYDAALDLELDSMEKFVLQCLAFYQKEI------ALYTASKINS---EFCWFDIDGDIDPL 692 (1050)
Q Consensus 637 eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~------~~~~~~~~~~---A~~~l~~a~~l~p~ 692 (1050)
+-+++|..+.++.|...+.+++++. ||.+-. ...+.|++.. ++..|.+++.....
T Consensus 1773 ~ilk~Y~~~~ail~ewe~~hy~l~~-yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~ 1836 (2382)
T KOG0890|consen 1773 DILKYYHDAKAILPEWEDKHYHLGK-YYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQ 1836 (2382)
T ss_pred HHHHHHHHHHHHcccccCceeeHHH-HHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcch
Confidence 4578999999999976665555542 222211 1223444444 55555566554433
No 282
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.07 E-value=0.26 Score=56.17 Aligned_cols=168 Identities=14% Similarity=0.005 Sum_probs=89.4
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HH
Q 001578 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---AD 484 (1050)
Q Consensus 408 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~ 484 (1050)
+..+|.+.+++..++.++..+|+.+.|.+.+++|+-.........+..-..-...|.- .-- -..+.| -.
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~---rL~-----~~~~eNR~ffl 104 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC---RLD-----YRRPENRQFFL 104 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc---ccC-----CccccchHHHH
Confidence 4567777777777777777777777777777776532110000000000000000000 000 001122 22
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CcHHHHHHH
Q 001578 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKS-AYTYLGLALSSIGEYKKAEEAHLKAIQLDR-----NFLEAWGHL 557 (1050)
Q Consensus 485 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~-~~~-~~~~la~~~~~~g~~~eA~~~l~~al~~~p-----~~~~~~~~l 557 (1050)
+++.....+.+.|-+..|+++.+-.+.++|. ++- +++.+-....+.++++--+..++....... ..+...+..
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 4444555666667777777777777777766 543 334444444555666655555555443111 123455666
Q ss_pred HHHHHHcCCh---------------HHHHHHHHHHHhhCCC
Q 001578 558 TQFYQDLANS---------------EKALECLQQVLYIDKR 583 (1050)
Q Consensus 558 a~~~~~~g~~---------------~~A~~~l~~al~~~p~ 583 (1050)
+.++...++- ++|...+.+|+...|.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 6777777776 7888888888887764
No 283
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.06 E-value=1.3 Score=52.09 Aligned_cols=179 Identities=13% Similarity=0.044 Sum_probs=103.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001578 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---------PEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447 (1050)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 447 (1050)
+...+..|..+|...+..-.++.|...|-++-.. |.- ..--...|.+-..-|++++|.+.|-.+-..+
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence 4456888989998888888888888777665321 111 0001234445555688888888776542211
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001578 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525 (1050)
Q Consensus 448 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 525 (1050)
.-..++...|++-...++++..-.-.. ...+++.++|..+..+..+++|.++|...-. .-++..
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~e 830 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIE 830 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHH
Confidence 122345556666665555543221111 1145777888888888888888888766422 123445
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001578 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576 (1050)
Q Consensus 526 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 576 (1050)
+++...+|++-. .....-|++...+-.+|..+...|.-++|.+.|-+
T Consensus 831 cly~le~f~~LE----~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 831 CLYRLELFGELE----VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHhhhhHH----HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 555555555432 22333456666666666666666666666666543
No 284
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.65 Score=53.68 Aligned_cols=252 Identities=13% Similarity=0.119 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN--SADILHERGIVNFKFKDFNAAVEDLSAC 509 (1050)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~l~~a 509 (1050)
+...+.+.......|..+......+..+...|+.+.|+..++..+...-. ..-.++.+|.++.-+.+|..|...+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44455555556667887777777888888888877777777777661111 1235667778888888888888888877
Q ss_pred HHhCCCCHHHHHHHH-HHHHH--------cCCHHHHHHHHHHH---HHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001578 510 VKLDKENKSAYTYLG-LALSS--------IGEYKKAEEAHLKA---IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (1050)
Q Consensus 510 l~~~p~~~~~~~~la-~~~~~--------~g~~~eA~~~l~~a---l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 577 (1050)
...+.-....|..++ .|+.. .|+-+.|-.+++.. +...|.+...--.+ ..+|.++-.+.
T Consensus 330 ~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~---------~RKverf~~~~ 400 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFI---------VRKVERFVKRG 400 (546)
T ss_pred HhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHH---------HHHHHHHhccc
Confidence 776655555555554 33322 22333333333222 22222221110000 01111111111
Q ss_pred HhhCCCCHH--HHHHHHHHHHH--CCCHHHHHHHHHHHH---hc-CCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578 578 LYIDKRFSK--AYHLRGLLLHG--LGQHKKAIKDLSSGL---GI-DPSNI-ECLYLRASCYHAIGEYREAIKDYDAALDL 648 (1050)
Q Consensus 578 l~~~p~~~~--~~~~la~~~~~--~g~~~eAi~~l~~al---~~-~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~l 648 (1050)
- .++.... .++.++.++.. ....++.. -++..+ +. ++++. --++.+|.++..+|+-..|..+|..+++.
T Consensus 401 ~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~ 478 (546)
T KOG3783|consen 401 P-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEK 478 (546)
T ss_pred c-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0 1111111 12333333321 12222222 111111 12 23322 24567899999999999999999999854
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHhhccCCCCH
Q 001578 649 ELDSMEKFVLQCLAFYQKEIALYTASK-INSEFCWFDIDGDIDPLFK 694 (1050)
Q Consensus 649 ~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~l~~a~~l~p~~~ 694 (1050)
.-....-.+....++|.+|..+...+. +.++..++.+|.++..++.
T Consensus 479 e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 479 ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 322222233445789999999999888 9999999999988765543
No 285
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.03 E-value=0.44 Score=53.62 Aligned_cols=135 Identities=13% Similarity=0.004 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH
Q 001578 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS---IGEYKKAEEAHLK 542 (1050)
Q Consensus 466 ~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~---~g~~~eA~~~l~~ 542 (1050)
+.-+.+|++|++.+|++..++..+-.+..+..+.++..+.+++++..+|++...|..+-..... .-.++.....|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 4455667777777777777666666666666666777777777777777766665544333222 2245566666666
Q ss_pred HHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q 001578 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (1050)
Q Consensus 543 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p 616 (1050)
++..-....... .........++. ....++..+...+.+.|..+.|+..++..++++-
T Consensus 128 ~l~~L~~~~~~~----------~~~~~~~~~~e~------~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 128 CLRALSRRRSGR----------MTSHPDLPELEE------FMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHhhccc----------cccccchhhHHH------HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 554321110000 000000000000 1134566777778888888888888888888753
No 286
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.92 E-value=0.29 Score=55.79 Aligned_cols=163 Identities=15% Similarity=0.045 Sum_probs=113.6
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH-----H--HHHHHHHcCCHHHHHHHHHHHHHhC
Q 001578 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH-----E--RGIVNFKFKDFNAAVEDLSACVKLD 513 (1050)
Q Consensus 441 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~-----~--lg~~~~~~g~~~~A~~~l~~al~~~ 513 (1050)
.++.+|-+.+++..++.++..+|+...|.+++++|+-.........+ . .|.+...-. .
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~---------------~ 96 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYR---------------R 96 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCc---------------c
Confidence 35678888888889999999999988888888888754321111111 0 011111000 1
Q ss_pred CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----C
Q 001578 514 KENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-FLE-AWGHLTQFYQDLANSEKALECLQQVLYIDK-----R 583 (1050)
Q Consensus 514 p~~~---~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~l~~al~~~p-----~ 583 (1050)
+.|. .+++.....+.+.|-+..|.++.+-.+.++|. ++- +.+.+-....+.++++--++.++....... .
T Consensus 97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~ 176 (360)
T PF04910_consen 97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSL 176 (360)
T ss_pred ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhh
Confidence 2232 35566778889999999999999999999998 654 444455556677888888888877655211 1
Q ss_pred CHHHHHHHHHHHHHCCCH---------------HHHHHHHHHHHhcCCCC
Q 001578 584 FSKAYHLRGLLLHGLGQH---------------KKAIKDLSSGLGIDPSN 618 (1050)
Q Consensus 584 ~~~~~~~la~~~~~~g~~---------------~eAi~~l~~al~~~p~~ 618 (1050)
.|...+..+.++...++- ++|...+.+|+...|.-
T Consensus 177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 345677888888888888 89999999999998763
No 287
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.70 E-value=0.037 Score=43.61 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 001578 71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112 (1050)
Q Consensus 71 ~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~ 112 (1050)
+++.+|.++.++|+|.+|...++.+|+.+|++.+|.-.+..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 567789999999999999999999999999998887766544
No 288
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.63 E-value=0.04 Score=60.81 Aligned_cols=103 Identities=15% Similarity=0.237 Sum_probs=82.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-----------cHH--------HHHHHHHHHHhhCH
Q 001578 25 ELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-----------IQD--------ICNRAFCYSQLELH 85 (1050)
Q Consensus 25 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~~-----------~~~--------~~nra~~~~~~~~~ 85 (1050)
.++++|.-.-.+.. ++...|++++|..|+..|..|+++... ... -..+..||+++++.
T Consensus 168 ~~PqiDkwl~vAL~---das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkp 244 (569)
T PF15015_consen 168 FLPQIDKWLQVALK---DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKP 244 (569)
T ss_pred cChhHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCC
Confidence 34555555433332 456779999999999999999977511 111 23678899999999
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578 86 KHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGY 130 (1050)
Q Consensus 86 ~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al 130 (1050)
+-|+...-+.|-++|.+..-|.+.+.|+..+.+|.+|...+-.|.
T Consensus 245 dlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 245 DLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred chHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887763
No 289
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.61 E-value=0.024 Score=39.97 Aligned_cols=31 Identities=39% Similarity=0.486 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 001578 104 QAYILKGCAFSALGRKEEALSVWEKGYEHAL 134 (1050)
Q Consensus 104 ~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~ 134 (1050)
++++.+|.+|..+|++++|+..|++++++.|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566777777777777777777777755544
No 290
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.42 Score=55.15 Aligned_cols=244 Identities=16% Similarity=0.072 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578 398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS--AGEAWKRRGQARAALGESVEAIQDLSKA 475 (1050)
Q Consensus 398 ~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~l~ka 475 (1050)
+...+.+.......|..+...+..+..+...|+.+.|+..++..+...-. ..-.++.+|.++..+.+|..|...+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45555556666778999999999999999999988899998888761111 1335678888999999999999999998
Q ss_pred HhhCCCCHHHHHHHH-HHHHH--------cCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578 476 LEFEPNSADILHERG-IVNFK--------FKDFNAAVEDLSACV---KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (1050)
Q Consensus 476 l~~~p~~~~~~~~lg-~~~~~--------~g~~~~A~~~l~~al---~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 543 (1050)
.+...-..-.|..++ .+++. .|+-+.|..+++... ...|.+...-.. -..+|.++-.+.
T Consensus 330 ~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f---------~~RKverf~~~~ 400 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF---------IVRKVERFVKRG 400 (546)
T ss_pred HhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH---------HHHHHHHHhccc
Confidence 887765544444444 44432 234444444433332 222222111000 011222211111
Q ss_pred HHhCcCcHH--HHHHHHHHHHHc--CChHHHHHHHHHHHh---h-CCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 001578 544 IQLDRNFLE--AWGHLTQFYQDL--ANSEKALECLQQVLY---I-DKRFS-KAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (1050)
Q Consensus 544 l~~~p~~~~--~~~~la~~~~~~--g~~~~A~~~l~~al~---~-~p~~~-~~~~~la~~~~~~g~~~eAi~~l~~al~~ 614 (1050)
- .++..+. .++.++.++... ...++.. -++..++ . ++++. --+..+|.++..+|+...|..+|..+++.
T Consensus 401 ~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~ 478 (546)
T KOG3783|consen 401 P-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEK 478 (546)
T ss_pred c-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0 1111111 223333333221 1222222 1222221 1 22222 24667899999999999999999988843
Q ss_pred C---CC----CHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhcCCC
Q 001578 615 D---PS----NIECLYLRASCYHAIGE-YREAIKDYDAALDLELDS 652 (1050)
Q Consensus 615 ~---p~----~~~~~~~la~~~~~~g~-~~eA~~~~~~al~l~p~~ 652 (1050)
. .. .|.++|.+|.+|..+|. ..+|..++.+|-+...++
T Consensus 479 e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 479 ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 1 11 26799999999999999 999999999998877543
No 291
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.53 E-value=2 Score=48.38 Aligned_cols=123 Identities=8% Similarity=-0.087 Sum_probs=73.0
Q ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH-HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 001578 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ-FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607 (1050)
Q Consensus 529 ~~g~~~eA~~~l~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~ 607 (1050)
+..-.+.|...|.++-+..-...+++..-|. -+...|++.-|-..|+-.+...|+.+..-...-..+...++-..|...
T Consensus 409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraL 488 (660)
T COG5107 409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARAL 488 (660)
T ss_pred HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHH
Confidence 3344566666666665543222333332222 244577788888888888877777766666666666777777778888
Q ss_pred HHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578 608 LSSGLGIDPSN--IECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (1050)
Q Consensus 608 l~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 651 (1050)
|++++..-... ...|-.+-..-..-|+...+...=++..++.|.
T Consensus 489 Fetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 489 FETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 87776543222 334444444444556666666666666666654
No 292
>PRK10941 hypothetical protein; Provisional
Probab=95.48 E-value=0.098 Score=56.65 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhH
Q 001578 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADL 140 (1050)
Q Consensus 72 ~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~ 140 (1050)
+.|+-.+|.+.++++.|++.++..+.++|+.+.-+--+|.+|.++|.+..|+.+|+.-++.+|+.|...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 567888999999999999999999999999998888899999999999999999999999999998653
No 293
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.14 E-value=3.1 Score=46.97 Aligned_cols=241 Identities=10% Similarity=-0.005 Sum_probs=150.6
Q ss_pred HHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001578 368 FCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447 (1050)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 447 (1050)
+....+..-.+..++.|+.....+...++-+.|+....+++...|. ....++.+|....+-+....+|+++.+.-.
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~- 364 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK- 364 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH-
Confidence 4445555556667778888777777788888887777777665554 566677777766666666666666543100
Q ss_pred cHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001578 448 AGEAWKRRGQARAA---LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (1050)
Q Consensus 448 ~~~~~~~la~~~~~---~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 524 (1050)
--+..+..-.. .|+++...+++-+-.. ...-++..+-....+..-.+.|...|-++-+..--...++..-|
T Consensus 365 ---r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A 438 (660)
T COG5107 365 ---RKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCA 438 (660)
T ss_pred ---HHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHH
Confidence 00000100000 1223222222221111 12223333334444555577777888777665433444555444
Q ss_pred HH-HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCH
Q 001578 525 LA-LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQH 601 (1050)
Q Consensus 525 ~~-~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~g~~ 601 (1050)
.+ +...|++.-|...|+-.+...|+.+......-..+...++-..|..+|+.++..-... ..+|..+-..-..-|+.
T Consensus 439 ~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~l 518 (660)
T COG5107 439 FIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSL 518 (660)
T ss_pred HHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcch
Confidence 44 5678999999999999999999998777777788889999999999999887653332 45566666666677888
Q ss_pred HHHHHHHHHHHhcCCCC
Q 001578 602 KKAIKDLSSGLGIDPSN 618 (1050)
Q Consensus 602 ~eAi~~l~~al~~~p~~ 618 (1050)
..++..=++..+..|..
T Consensus 519 N~v~sLe~rf~e~~pQe 535 (660)
T COG5107 519 NNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHhHHHHHHHHcCcH
Confidence 77777777777777763
No 294
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.10 E-value=0.037 Score=38.57 Aligned_cols=33 Identities=36% Similarity=0.654 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 001578 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (1050)
Q Consensus 620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 652 (1050)
++++.+|.++...|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 356777778877778888888888887777763
No 295
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.05 E-value=1.2 Score=46.74 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=43.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578 393 NEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQ 443 (1050)
Q Consensus 393 ~~g~~~~Ai~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~ 443 (1050)
...+.++|+.-|++++++.+.. ..++..+..+++.+++|++-+..|.+.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3458999999999999998875 35777888899999999999999998774
No 296
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.89 E-value=0.041 Score=39.61 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 001578 105 AYILKGCAFSALGRKEEALSVWEKGYEHA 133 (1050)
Q Consensus 105 a~~~~g~~~~~lg~~~~A~~~~~~al~~~ 133 (1050)
++..+|.+|..+|++++|+..|++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57788899999999999999999875443
No 297
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.69 E-value=0.039 Score=39.69 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578 621 CLYLRASCYHAIGEYREAIKDYDAALDLE 649 (1050)
Q Consensus 621 ~~~~la~~~~~~g~~~eA~~~~~~al~l~ 649 (1050)
++.++|.+|..+|++++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35667777777777777777777755544
No 298
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.67 E-value=0.097 Score=55.53 Aligned_cols=62 Identities=24% Similarity=0.236 Sum_probs=37.5
Q ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHH
Q 001578 596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (1050)
Q Consensus 596 ~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 657 (1050)
...|+.++|...|+.|+.++|.+++++..+|.......+.-+|-.+|-+|+.++|.+.++..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 34566666666666666666666666666666666556666666666666666666655443
No 299
>PRK10941 hypothetical protein; Provisional
Probab=94.61 E-value=0.25 Score=53.51 Aligned_cols=70 Identities=14% Similarity=0.017 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH
Q 001578 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (1050)
Q Consensus 587 ~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~ 656 (1050)
...++-.+|.+.++++.|+.+.+..+.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 4556677778888888888888888888888888888888888888888888888888888888887754
No 300
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.56 E-value=0.85 Score=41.91 Aligned_cols=91 Identities=18% Similarity=0.314 Sum_probs=61.8
Q ss_pred HHCCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHH-------HhcCCCHHHH
Q 001578 596 HGLGQHKKAIKDLSSGLGIDPS------------NIECLYLRASCYHAIGEYREAIKDYDAAL-------DLELDSMEKF 656 (1050)
Q Consensus 596 ~~~g~~~eAi~~l~~al~~~p~------------~~~~~~~la~~~~~~g~~~eA~~~~~~al-------~l~p~~~~~~ 656 (1050)
...|-|++|...++++++.... +.-++-.|+.++..+|+|++++..-++++ +++.+....|
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 4456777777777777765321 12356667778888888877766655555 4555555545
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 001578 657 VLQCLAFYQKEIALYTASKINSEFCWFDIDGDI 689 (1050)
Q Consensus 657 ~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l 689 (1050)
+ .+-+.++.++...|+.++|+..|+++++.
T Consensus 100 I---aaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 100 I---AAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H---HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4 56788999999999999999999998763
No 301
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.54 E-value=0.14 Score=40.38 Aligned_cols=37 Identities=35% Similarity=0.530 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH
Q 001578 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF 656 (1050)
Q Consensus 620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~ 656 (1050)
+.++.+|..+.++|+|++|..+.+.+++++|++..+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4678888888888888888888888888888887654
No 302
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.39 E-value=0.076 Score=36.96 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001578 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPM 413 (1050)
Q Consensus 383 ~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~ 413 (1050)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455555555555555555555555555554
No 303
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.37 E-value=18 Score=44.76 Aligned_cols=122 Identities=11% Similarity=-0.012 Sum_probs=64.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 001578 524 GLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (1050)
Q Consensus 524 a~~~~~~g~~~eA~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 599 (1050)
+..-....+.+.|...+.+......-. ..++..+|.-....+..++|...+..+..... +.........+....+
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHcc
Confidence 333344555666776666543333222 22233344333333225566666665443221 2233333333444667
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 001578 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646 (1050)
Q Consensus 600 ~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 646 (1050)
+++.+...+...-..........|-+|.++...|+.++|..+|+++.
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77766666665433333455677777777777777777777777764
No 304
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.22 E-value=0.13 Score=54.51 Aligned_cols=75 Identities=25% Similarity=0.407 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001578 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (1050)
Q Consensus 384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (1050)
-+..|.-....|+.++|..+|+.++.+.|.+++++..+|......++.-+|-.+|-+|+.+.|.+.+++.+.++.
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 345566667778888888888888888888888888888888887888888888888888888888777665543
No 305
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.19 E-value=0.45 Score=43.46 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=68.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001578 387 RGIAQVNEGKYASAISIFDQILKEDPMYPE---ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (1050)
Q Consensus 387 ~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~---a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 463 (1050)
+|..++..|++-+|+++.+..+..++++.. .+...|.++..+ +......+...-+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yLl-------- 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYLL-------- 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHHH--------
Confidence 466788889999999999999888777653 344445554332 222222222222222
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (1050)
Q Consensus 464 ~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~ 512 (1050)
.+++++.++..+.|..+..++.+|.-+-....|+++..-.++++..
T Consensus 62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3567777888888877778888887777777778888777777765
No 306
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.12 E-value=3.8 Score=48.54 Aligned_cols=226 Identities=14% Similarity=0.060 Sum_probs=136.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH----------HHHHHHHHHc
Q 001578 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW----------KRRGQARAAL 462 (1050)
Q Consensus 393 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~ 462 (1050)
..-..++|+++.+ .+| ++..|..+|......-.++.|...|-+.-.. +.- ... ...|.+-.--
T Consensus 675 e~vgledA~qfiE----dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gi-k~vkrl~~i~s~~~q~aei~~~~ 747 (1189)
T KOG2041|consen 675 EAVGLEDAIQFIE----DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGI-KLVKRLRTIHSKEQQRAEISAFY 747 (1189)
T ss_pred HHhchHHHHHHHh----cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cch-hHHHHhhhhhhHHHHhHhHhhhh
Confidence 3334566665443 344 5889999999888888888888777665321 110 111 2344555556
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 001578 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAH 540 (1050)
Q Consensus 463 g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~l 540 (1050)
|++++|.+.|-.+-.. + ....++.+.|++-...++++..-.-+.+ -..++.++|..+.....+++|.++|
T Consensus 748 g~feeaek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889988887544221 1 1234455677777666665542211111 2468899999999999999999999
Q ss_pred HHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH---------
Q 001578 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG--------- 611 (1050)
Q Consensus 541 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~a--------- 611 (1050)
...-. .-++..+++...+|++-..+ ...-|++...+-.+|..+...|.-++|.+.|-+.
T Consensus 820 ~~~~~--------~e~~~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~t 887 (1189)
T KOG2041|consen 820 SYCGD--------TENQIECLYRLELFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHT 887 (1189)
T ss_pred Hhccc--------hHhHHHHHHHHHhhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHH
Confidence 87532 23456677777777664433 3345677777777777777777777777665432
Q ss_pred ----------HhcCC--CCHH---HHHHHHHHHHHccCHHHHHHHHHHH
Q 001578 612 ----------LGIDP--SNIE---CLYLRASCYHAIGEYREAIKDYDAA 645 (1050)
Q Consensus 612 ----------l~~~p--~~~~---~~~~la~~~~~~g~~~eA~~~~~~a 645 (1050)
+++.. .-++ ..-..+.-+.+.++..+|++.++++
T Consensus 888 Cv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 888 CVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 11111 1111 2222334455667777888777776
No 307
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=11 Score=41.31 Aligned_cols=266 Identities=13% Similarity=0.067 Sum_probs=165.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCc--H
Q 001578 385 LSRGIAQVNEGKYASAISIFDQILKE--DPMY--------PEALIGRGTARAFQRELEAAISDFTEAIQ---SNPSA--G 449 (1050)
Q Consensus 385 ~~~a~~~~~~g~~~~Ai~~~~~al~~--~p~~--------~~a~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~--~ 449 (1050)
+..+.......++++++..|..++.. .|.+ ......+|..+...|+.++-.......-. .-+.. .
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 56677777788889999999999874 2221 34678899999999998776555544322 11111 1
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--C
Q 001578 450 EAWKRRGQARA-ALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKL----DKE--N 516 (1050)
Q Consensus 450 ~~~~~la~~~~-~~g~~~eA~~~l~kal~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~l~~al~~----~p~--~ 516 (1050)
.....+-.... ..+....-+..+..+++-....- ..-..+..+|+..++|.+|+......++- +.. -
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL 167 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL 167 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence 11111222221 12334455555555555433221 23345788899999999999887776543 222 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCcH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---CCHH
Q 001578 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFL--EAWGHLTQFYQDLANSEKALECLQQVLYIDK---RFSK 586 (1050)
Q Consensus 517 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-----p~~~--~~~~~la~~~~~~g~~~~A~~~l~~al~~~p---~~~~ 586 (1050)
.+.+..-..+|+...+..+|...+..|-... |... ..-..-|.++....+|.-|..+|-++++-.. ++..
T Consensus 168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~ 247 (411)
T KOG1463|consen 168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK 247 (411)
T ss_pred eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence 3566667788888888888888887765432 2211 1222335566677899999999999987543 2233
Q ss_pred H---HHHHHHHHHHCCCHHHH--HHHHHHHHhcCCCCHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcC
Q 001578 587 A---YHLRGLLLHGLGQHKKA--IKDLSSGLGIDPSNIECLYLRASCYHA--IGEYREAIKDYDAALDLEL 650 (1050)
Q Consensus 587 ~---~~~la~~~~~~g~~~eA--i~~l~~al~~~p~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~l~p 650 (1050)
+ +..+-.+-...+..++- +-.-+.+++....+.++....|.++.. +.+|+.|+..|..-+..+|
T Consensus 248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 3 22233333445555554 444455666666778888888888864 4578999999998887766
No 308
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.02 E-value=0.74 Score=52.61 Aligned_cols=91 Identities=9% Similarity=0.007 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHh
Q 001578 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ-HKKAIKDLSSGLG 613 (1050)
Q Consensus 535 eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~-~~eAi~~l~~al~ 613 (1050)
.-...|+.|+...+.+...|........+.+.+.+--..|.+++..+|+++..|...|.-.+.-+. .+.|...|.+++.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345567777777777777777776666666667777777777777777777777777666665554 6777777777777
Q ss_pred cCCCCHHHHHHH
Q 001578 614 IDPSNIECLYLR 625 (1050)
Q Consensus 614 ~~p~~~~~~~~l 625 (1050)
.+|+++..|...
T Consensus 169 ~npdsp~Lw~ey 180 (568)
T KOG2396|consen 169 FNPDSPKLWKEY 180 (568)
T ss_pred cCCCChHHHHHH
Confidence 777777666443
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.86 E-value=0.8 Score=45.01 Aligned_cols=85 Identities=18% Similarity=0.125 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (1050)
...++.....-...++.+++...+..+--+.|..+..-..-|.++...|++.+|+..++.+.+..|..+.+--.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34455566666667777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCH
Q 001578 461 ALGES 465 (1050)
Q Consensus 461 ~~g~~ 465 (1050)
.+|+.
T Consensus 90 ~~~D~ 94 (160)
T PF09613_consen 90 ALGDP 94 (160)
T ss_pred HcCCh
Confidence 77664
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.71 E-value=0.92 Score=44.59 Aligned_cols=98 Identities=17% Similarity=0.113 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 001578 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (1050)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~ 631 (1050)
..+..+..+-...++.+++...+...--+.|..+..-..-|.++...|++.+|+..|+.+....|..+.+.-.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34455556666677778888777777777888888888888888888888888888888777777777777778888877
Q ss_pred ccCHHHHHHHHHHHHHhcC
Q 001578 632 IGEYREAIKDYDAALDLEL 650 (1050)
Q Consensus 632 ~g~~~eA~~~~~~al~l~p 650 (1050)
+|+.. =..+-..+++..+
T Consensus 91 ~~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 91 LGDPS-WRRYADEVLESGA 108 (160)
T ss_pred cCChH-HHHHHHHHHhcCC
Confidence 77642 1222334444444
No 311
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=2.1 Score=50.09 Aligned_cols=127 Identities=21% Similarity=0.115 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 001578 434 AISDFTEAIQSNPSAGEAWKR--RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA-CV 510 (1050)
Q Consensus 434 A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~-al 510 (1050)
++..+...+.+++.++..+.. ++..+...+....+.-.+..++..+|.+..+..+++......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444455555544322 244445555555555556666666666666666666555555544444433333 55
Q ss_pred HhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Q 001578 511 KLDKENKSAYTYL------GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560 (1050)
Q Consensus 511 ~~~p~~~~~~~~l------a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~ 560 (1050)
...|.+......+ +.....+|+..++...+.++....|.++.+...+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 5555555443333 5555555555566666666666655554444444333
No 312
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=2.3 Score=49.83 Aligned_cols=118 Identities=23% Similarity=0.113 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhCcCcHHHHHH--HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HH
Q 001578 536 AEEAHLKAIQLDRNFLEAWGH--LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS-GL 612 (1050)
Q Consensus 536 A~~~l~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~-al 612 (1050)
++..+...+.+++.++..+.. +...+...++...+.-.+..++..+|.+..+..+++.++...|....++..+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333333333444444433221 233444444554555555555555555555555555555444444443333333 44
Q ss_pred hcCCCCHHHHHHH------HHHHHHccCHHHHHHHHHHHHHhcCCCH
Q 001578 613 GIDPSNIECLYLR------ASCYHAIGEYREAIKDYDAALDLELDSM 653 (1050)
Q Consensus 613 ~~~p~~~~~~~~l------a~~~~~~g~~~eA~~~~~~al~l~p~~~ 653 (1050)
...|.+.+....+ +..+..+|+..++....+++.++.|.++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~ 176 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYP 176 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Confidence 4455544433333 5555555555555555555555555553
No 313
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.59 E-value=17 Score=42.00 Aligned_cols=98 Identities=12% Similarity=-0.073 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001578 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491 (1050)
Q Consensus 412 p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~ 491 (1050)
|-+...+..+-.++.......-....+.+.+... .+..+++.++.+|... ..++-....++..+.+-++...-..++.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 4444455555555555555556666677776654 4456677788888777 4556667777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q 001578 492 VNFKFKDFNAAVEDLSACVKL 512 (1050)
Q Consensus 492 ~~~~~g~~~~A~~~l~~al~~ 512 (1050)
.|.. ++...+..+|.+++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH
Confidence 7666 7777777777777654
No 314
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.53 E-value=0.13 Score=34.65 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 001578 71 DICNRAFCYSQLELHKHVIRDCDKALQLDPT 101 (1050)
Q Consensus 71 ~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~ 101 (1050)
.+.++|.++..++++++|+..++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556667777777777777777777766664
No 315
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.52 E-value=4.9 Score=47.25 Aligned_cols=88 Identities=14% Similarity=0.022 Sum_probs=45.9
Q ss_pred CcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001578 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626 (1050)
Q Consensus 547 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la 626 (1050)
+....+.+..++..+.....+.-|.++|.+.-. ...+..++...+++.+|....++.-+.- +++++-.|
T Consensus 743 d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pya 811 (1081)
T KOG1538|consen 743 DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYA 811 (1081)
T ss_pred chhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcccc---ccccchHH
Confidence 333444555555555555556666665554321 1223444555666666666555432222 23555556
Q ss_pred HHHHHccCHHHHHHHHHHH
Q 001578 627 SCYHAIGEYREAIKDYDAA 645 (1050)
Q Consensus 627 ~~~~~~g~~~eA~~~~~~a 645 (1050)
.-+.+..+++||.+.|.+|
T Consensus 812 qwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 812 QWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HHhhhhhhHHHHHHHHHHh
Confidence 6666666666666555554
No 316
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.51 E-value=0.54 Score=42.98 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=69.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 001578 422 GTARAFQRELEAAISDFTEAIQSNPSAGE---AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498 (1050)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~ 498 (1050)
|..++..|++-+|++..+..+...+++.. .+...|.++. +.+......+....+.+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~------------~lA~~ten~d~k~~yLl--------- 61 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFY------------KLAKKTENPDVKFRYLL--------- 61 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHH------------HHHHhccCchHHHHHHH---------
Confidence 45566677777777777777766665543 2333333332 22222222233333333
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001578 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547 (1050)
Q Consensus 499 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 547 (1050)
.+++++.++..+.|..+..++.+|.-+.....|+++....++++.+.
T Consensus 62 --~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 62 --GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred --HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 47789999999999999999999999888888999999999988763
No 317
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.48 E-value=0.9 Score=51.24 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=104.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001578 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470 (1050)
Q Consensus 391 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 470 (1050)
....|+...|-.-...++...|..|......+.+...+|+|+.|...+..+-..-..-..+...+-.....+|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 45678999999999999999999999999999999999999999988877665554445556666677788899999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001578 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (1050)
Q Consensus 471 ~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~ 517 (1050)
...-.+.-.-.++++....+.....+|-+++|..++++.+.++|...
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 88888876667777777777777788889999999999999887643
No 318
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=13 Score=39.63 Aligned_cols=264 Identities=13% Similarity=0.087 Sum_probs=154.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhC--CCcHHH
Q 001578 385 LSRGIAQVNEGKYASAISIFDQILKEDP--------MYPEALIGRGTARAFQRELEAAISDFTEA---IQSN--PSAGEA 451 (1050)
Q Consensus 385 ~~~a~~~~~~g~~~~Ai~~~~~al~~~p--------~~~~a~~~la~~~~~~g~~~~A~~~~~~a---l~~~--p~~~~~ 451 (1050)
+.+|.-....+++++|+..|.+++...- ....+...++.+|...|++..--+..... .... |....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 5677888889999999999999986521 22456788999999999876544433322 2211 111111
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C--CCCHH
Q 001578 452 WKRRGQAR-AALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKL----D--KENKS 518 (1050)
Q Consensus 452 ~~~la~~~-~~~g~~~eA~~~l~kal~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~l~~al~~----~--p~~~~ 518 (1050)
...+-.-+ .....++.-+..+...++.....- ..-..+..++++.|+|.+|+......+.- + +.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 11111111 112345555555555555433221 23345677888999999999887776543 1 33346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCcHHHH--HHHHHHHHHcCChHHHHHHHHHHHhhCC---CCHHH-
Q 001578 519 AYTYLGLALSSIGEYKKAEEAHLKAIQL-----DRNFLEAW--GHLTQFYQDLANSEKALECLQQVLYIDK---RFSKA- 587 (1050)
Q Consensus 519 ~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~~~--~~la~~~~~~g~~~~A~~~l~~al~~~p---~~~~~- 587 (1050)
.+..-..+|....+..++...+..|-.. .|....+. ..-|.......+|.-|..+|-++++-.. .+..+
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 6777778888888888877777666443 23222222 2335556677889999999998887543 23333
Q ss_pred ----HHHHHHHHHHCCCHHHHHHHHH--HHHh-cCCCCHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhcC
Q 001578 588 ----YHLRGLLLHGLGQHKKAIKDLS--SGLG-IDPSNIECLYLRASCYH--AIGEYREAIKDYDAALDLEL 650 (1050)
Q Consensus 588 ----~~~la~~~~~~g~~~eAi~~l~--~al~-~~p~~~~~~~~la~~~~--~~g~~~eA~~~~~~al~l~p 650 (1050)
|..+..+.. +..++.-..++ ..++ .+....++....+.++. .+.+|..|+..|..-+.-+|
T Consensus 247 ~sLkYmlLSkIMl--N~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 247 VSLKYMLLSKIML--NRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 233333333 33333333322 2333 23344566666666664 34568888888887766554
No 319
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.04 E-value=0.96 Score=40.26 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=33.2
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccC
Q 001578 571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGE 634 (1050)
Q Consensus 571 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~--~~~~~~la~~~~~~g~ 634 (1050)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+++. ..+...+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344555556666666666666666666666666666666666655443 3344444444444444
No 320
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.00 E-value=0.48 Score=53.32 Aligned_cols=124 Identities=17% Similarity=0.157 Sum_probs=87.2
Q ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 001578 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (1050)
Q Consensus 529 ~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l 608 (1050)
..|+.-.|-+-+..++...|.++......+.+...+|+|+.|...+..+-..-.....+...+-.....+|++++|....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 45777777777777777777777777777777777788877777766554443333444555556667777888887777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 001578 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652 (1050)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 652 (1050)
.-.+...-+++++..--|..-.++|-+++|..++++.+.++|..
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 77777666667776666666677777788888888888777653
No 321
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.87 E-value=52 Score=45.36 Aligned_cols=273 Identities=14% Similarity=0.123 Sum_probs=151.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHHcCCH
Q 001578 421 RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG-IVNFKFKDF 499 (1050)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg-~~~~~~g~~ 499 (1050)
.-..+...|++..|..+|+++++.+|+....+...-......|.+...+...+-.....++...-++.++ .+..+.+++
T Consensus 1455 qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1455 QILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcch
Confidence 3344556788888999999998888887777777777777777777777766665555444444444433 233556666
Q ss_pred HHHHHHHH-------------H-HHHhCCCCHHHH-HHHHHHH----------HHcCCHHHHHHHHHHHHHh--------
Q 001578 500 NAAVEDLS-------------A-CVKLDKENKSAY-TYLGLAL----------SSIGEYKKAEEAHLKAIQL-------- 546 (1050)
Q Consensus 500 ~~A~~~l~-------------~-al~~~p~~~~~~-~~la~~~----------~~~g~~~eA~~~l~~al~~-------- 546 (1050)
+.-..+.. + .+.....+..+. ..+...- ...|-|..+.++.-++..+
T Consensus 1535 D~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~ 1614 (2382)
T KOG0890|consen 1535 DLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIE 1614 (2382)
T ss_pred hhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 65544422 0 011111111110 0111100 0111222222222221111
Q ss_pred -----CcCc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHh---hC----CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 001578 547 -----DRNF-----LEAWGHLTQFYQDLANSEKALECLQQVLY---ID----KRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (1050)
Q Consensus 547 -----~p~~-----~~~~~~la~~~~~~g~~~~A~~~l~~al~---~~----p~~~~~~~~la~~~~~~g~~~eAi~~l~ 609 (1050)
.+++ ..-|.+....-....+..+-+-.+++++- .+ ....+.|...|++....|+++.|..++-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 1111 12222222222222224444445555432 12 2446889999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC--------HHHHHH--HHHHHHHHHHHHHHhcC--HH
Q 001578 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS--------MEKFVL--QCLAFYQKEIALYTASK--IN 677 (1050)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~--------~~~~~~--~~~~~~~~g~~~~~~~~--~~ 677 (1050)
.|.+.. -++++...|..+...|+-..|+..+++.++++-.+ +..... ...+.+..+.-....++ .+
T Consensus 1695 ~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~ 1772 (2382)
T KOG0890|consen 1695 NAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESK 1772 (2382)
T ss_pred hhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHH
Confidence 998876 46899999999999999999999999999765322 111111 11122222222222233 33
Q ss_pred HHHHHHHHhhccCCCCHH
Q 001578 678 SEFCWFDIDGDIDPLFKE 695 (1050)
Q Consensus 678 ~A~~~l~~a~~l~p~~~e 695 (1050)
.-+..|..+.++.|.|.+
T Consensus 1773 ~ilk~Y~~~~ail~ewe~ 1790 (2382)
T KOG0890|consen 1773 DILKYYHDAKAILPEWED 1790 (2382)
T ss_pred HHHHHHHHHHHHcccccC
Confidence 346677788888886653
No 322
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.82 E-value=0.97 Score=40.21 Aligned_cols=45 Identities=27% Similarity=0.381 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 001578 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549 (1050)
Q Consensus 505 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 549 (1050)
.+++.+..+|++..+.+.+|..+...|++++|++.+..+++.+++
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 344444445555555555555555555555555555555444443
No 323
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.72 E-value=24 Score=40.97 Aligned_cols=95 Identities=9% Similarity=0.039 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Q 001578 55 AIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR-KEEALSVWEKGYEH 132 (1050)
Q Consensus 55 Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~-~~~A~~~~~~al~~ 132 (1050)
=+.+|..|.... .++.++.+-..-.-+.+.+.+.-+.|.++|..+|++++.++-.|.=.+..+. .+.|...|.+++-.
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 367899988777 5777777666655556669999999999999999999999998888888887 99999999999999
Q ss_pred ccCChHhHHHHHHHHHH
Q 001578 133 ALHQSADLKQFLELEEL 149 (1050)
Q Consensus 133 ~~~~~~~~~~l~~l~~~ 149 (1050)
+|+.|.-.+.-..++..
T Consensus 170 npdsp~Lw~eyfrmEL~ 186 (568)
T KOG2396|consen 170 NPDSPKLWKEYFRMELM 186 (568)
T ss_pred CCCChHHHHHHHHHHHH
Confidence 99999887776665543
No 324
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.68 E-value=39 Score=43.38 Aligned_cols=131 Identities=21% Similarity=0.194 Sum_probs=94.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCcHHHHHH
Q 001578 385 LSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQ----R---ELEAAISDFTEAIQSNPSAGEAWKR 454 (1050)
Q Consensus 385 ~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~ 454 (1050)
+....+++....|+.|+..|+++-...|.. .++.+..|.....+ | .+++|+..|++. .-.|.-+--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHh
Confidence 344566778889999999999999998875 46778888877653 2 467777777764 335666777889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC
Q 001578 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-----KDFNAAVEDLSACVKLDKEN 516 (1050)
Q Consensus 455 la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~-----g~~~~A~~~l~~al~~~p~~ 516 (1050)
.|.+|.++|++++-+++|.-|++..|+.+.+-...-.+.+++ .+-..|....--++...|..
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999998876443333332222 12344555555566666654
No 325
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.57 E-value=0.18 Score=33.97 Aligned_cols=31 Identities=35% Similarity=0.722 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578 621 CLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (1050)
Q Consensus 621 ~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 651 (1050)
+++.+|.++..+|++++|..+|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666666554
No 326
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.29 E-value=1 Score=57.41 Aligned_cols=133 Identities=14% Similarity=0.164 Sum_probs=74.8
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHH------HHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 001578 379 ISVDFRLSRGIAQVNEGKYASAIS------IFDQIL-KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS------- 444 (1050)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~Ai~------~~~~al-~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~------- 444 (1050)
....-....|......|.+.+|.+ ++.... .+.|.....+..++.++...|++++|+..-.++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 345556677777777888887777 443222 245666777777777777777777777776665432
Q ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578 445 -NPSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511 (1050)
Q Consensus 445 -~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~ 511 (1050)
.|+....+.+++......++...|+..+.++..+ .|.-+....+++.++...++++.|+.+++.|+.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1233445555555555555555555555555443 222233334444444444445555555444444
No 327
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.21 E-value=12 Score=37.15 Aligned_cols=27 Identities=7% Similarity=-0.023 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 001578 621 CLYLRASCYHAIGEYREAIKDYDAALD 647 (1050)
Q Consensus 621 ~~~~la~~~~~~g~~~eA~~~~~~al~ 647 (1050)
+...||..-.+.|++..|...|.....
T Consensus 169 ArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 169 AREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 344444444444444444444444433
No 328
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.15 E-value=0.43 Score=54.50 Aligned_cols=102 Identities=22% Similarity=0.133 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ---RELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (1050)
++..+..|.-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....|++++|....+++.++.
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 444445555555666777788888888888888777777777777664 45566777777777777777777778888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC
Q 001578 458 ARAALGESVEAIQDLSKALEFEPNS 482 (1050)
Q Consensus 458 ~~~~~g~~~eA~~~l~kal~~~p~~ 482 (1050)
++..++++.+|+.+...+....|.+
T Consensus 454 aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHhhHHHhhhhHHHHhhcCchh
Confidence 8877777777777777766666643
No 329
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.12 E-value=13 Score=36.87 Aligned_cols=144 Identities=13% Similarity=-0.062 Sum_probs=106.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHH
Q 001578 487 HERGIVNFKFKDFNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQF 560 (1050)
Q Consensus 487 ~~lg~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~----~~~~~~la~~ 560 (1050)
+.-+.-+...+..++|+..|...-+-.-.. .-+....+.+....|+...|+..|.++-...|-- .-+...-+.+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 344555667788999999998876655443 3466778999999999999999999987654321 2344566777
Q ss_pred HHHcCChHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 001578 561 YQDLANSEKALECLQQVL-YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (1050)
Q Consensus 561 ~~~~g~~~~A~~~l~~al-~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~ 631 (1050)
+...|-|+......+..- ..+|-...+...||..-++.|++..|...|..... +.+.+....+++.+...
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 889999998777665532 22444456778899999999999999999998877 55556666677766554
No 330
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=91.98 E-value=1.3 Score=56.62 Aligned_cols=164 Identities=21% Similarity=0.244 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHcCCHHHHHH------HHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Q 001578 485 ILHERGIVNFKFKDFNAAVE------DLS-ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRN 549 (1050)
Q Consensus 485 ~~~~lg~~~~~~g~~~~A~~------~l~-~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~ 549 (1050)
-....|......|.+.+|.+ .+. ..-.+.|+....+..++.++...|++++|+..-.++.-+ .|+
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 34556666677777887777 444 223346778889999999999999999999988877544 245
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----
Q 001578 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYI--------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---- 617 (1050)
Q Consensus 550 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~---- 617 (1050)
....+.+++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+.+++.|++....
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 5778889999999999999999999988764 3555566788899999999999999999999885321
Q ss_pred ----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578 618 ----NIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (1050)
Q Consensus 618 ----~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 648 (1050)
....+..++.++..++++..|....+....+
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 2345666777777777777777766666554
No 331
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.79 E-value=1.4 Score=46.31 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHCCCHH-------HHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578 585 SKAYHLRGLLLHGLGQHK-------KAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (1050)
Q Consensus 585 ~~~~~~la~~~~~~g~~~-------eAi~~l~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 651 (1050)
+..+..+|++|..+|+.+ .|+..|.++++.... ...+.+.+|.+..+.|++++|..+|.+++...-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 345666677777776643 355555555543321 2467888999999999999999999999876544
Q ss_pred C
Q 001578 652 S 652 (1050)
Q Consensus 652 ~ 652 (1050)
+
T Consensus 198 s 198 (214)
T PF09986_consen 198 S 198 (214)
T ss_pred C
Confidence 3
No 332
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.54 E-value=2.7 Score=39.85 Aligned_cols=73 Identities=22% Similarity=0.242 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHH
Q 001578 585 SKAYHLRGLLLHGLG---QHKKAIKDLSSGLG-IDPS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV 657 (1050)
Q Consensus 585 ~~~~~~la~~~~~~g---~~~eAi~~l~~al~-~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~ 657 (1050)
....+++|+++.... +..+.+..++..++ -.|. .-+..|.+|..+.++++|+.|+.+.+..++.+|++.++..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 466778888887654 45667888888886 4443 3568888999999999999999999999999999887543
No 333
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.22 E-value=2.9 Score=42.49 Aligned_cols=97 Identities=13% Similarity=0.006 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001578 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662 (1050)
Q Consensus 586 ~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~ 662 (1050)
.++..+|..|.+.|+.++|++.|.++....... .+.++.+..+....|++.....+..++-.+-.. ...+......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 567778888888888888888888876654322 456677777778888888888888887766433 2223344444
Q ss_pred HHHHHHHHHHhcCHHHHHHHH
Q 001578 663 FYQKEIALYTASKINSEFCWF 683 (1050)
Q Consensus 663 ~~~~g~~~~~~~~~~~A~~~l 683 (1050)
....|+.+...++|..|-..|
T Consensus 116 k~~~gL~~l~~r~f~~AA~~f 136 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELF 136 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHH
Confidence 555677777778888888877
No 334
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.57 E-value=2.8 Score=40.59 Aligned_cols=83 Identities=12% Similarity=-0.009 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001578 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (1050)
Q Consensus 383 ~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (1050)
.+..........++.+++..++..+--+.|+.+..-..-|.++...|++.+|+..++...+..+..+.+.-.++.|+..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 34444445555777777777777777777887777777788888888888888888877777666676666777777776
Q ss_pred CCH
Q 001578 463 GES 465 (1050)
Q Consensus 463 g~~ 465 (1050)
|+.
T Consensus 92 ~Dp 94 (153)
T TIGR02561 92 GDA 94 (153)
T ss_pred CCh
Confidence 663
No 335
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.56 E-value=0.32 Score=49.86 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=44.5
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH
Q 001578 594 LLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653 (1050)
Q Consensus 594 ~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 653 (1050)
...+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|...|++.++++|++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 344567777777777777777777777777777777777777777777777777777653
No 336
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.45 E-value=3.1 Score=40.32 Aligned_cols=81 Identities=19% Similarity=0.128 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 001578 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634 (1050)
Q Consensus 555 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~ 634 (1050)
..+...-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..|+...+-.+..+...-.++.|+..+|+
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 33344444577777777777777777788888777788888888888888888888777777777777777888877777
Q ss_pred H
Q 001578 635 Y 635 (1050)
Q Consensus 635 ~ 635 (1050)
.
T Consensus 94 p 94 (153)
T TIGR02561 94 A 94 (153)
T ss_pred h
Confidence 4
No 337
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.31 E-value=2.4 Score=44.49 Aligned_cols=65 Identities=26% Similarity=0.263 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHcCChH-------HHHHHHHHHHhhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 001578 551 LEAWGHLTQFYQDLANSE-------KALECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (1050)
Q Consensus 551 ~~~~~~la~~~~~~g~~~-------~A~~~l~~al~~~p------~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~ 615 (1050)
+..+..+|.+|...|+.+ .|++.|+++++... +...+.+.+|.+..+.|++++|+.+|.+++...
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 344455555565555533 34444444443321 224567788888888888888888888888754
No 338
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.21 E-value=3.2 Score=42.22 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=9.7
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 001578 490 GIVNFKFKDFNAAVEDLSAC 509 (1050)
Q Consensus 490 g~~~~~~g~~~~A~~~l~~a 509 (1050)
|..++..++|..|.+.|-.+
T Consensus 120 gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 120 GLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHhchHHHHHHHHHcc
Confidence 44444455555555554444
No 339
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=90.14 E-value=32 Score=37.55 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=24.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443 (1050)
Q Consensus 391 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 443 (1050)
..+..+..+-++....+++++|..+.++..+|.-- ..-..+|...+.++++
T Consensus 194 AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALk 244 (556)
T KOG3807|consen 194 AWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALK 244 (556)
T ss_pred HHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHH
Confidence 34444555555555555556655555555554321 1123344455555443
No 340
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=89.99 E-value=26 Score=39.52 Aligned_cols=135 Identities=13% Similarity=0.002 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------
Q 001578 382 DFRLSRGIAQVNEGKYASAISIFDQILKED-PM--------YPEALIGRGTARAFQRELEAAISDFTEAIQSNP------ 446 (1050)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~-p~--------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p------ 446 (1050)
..++.....++.+.++.+|..+-+..+..- -. .+..|+.+..+|...|+...-...+...+....
T Consensus 127 Y~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e 206 (493)
T KOG2581|consen 127 YLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEE 206 (493)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcch
Confidence 344445555666788999988887766421 11 144567777777777876666555555444321
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001578 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFE--P--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (1050)
Q Consensus 447 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~--p--~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~ 516 (1050)
........+-+.|...+.|+.|.....+..--. . .-+..++.+|.+..-+++|..|.+++-+|+...|.+
T Consensus 207 ~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 207 GQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 112334455666777777777777666553111 1 124466677888888888888888888888888764
No 341
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.75 E-value=22 Score=41.82 Aligned_cols=48 Identities=17% Similarity=0.055 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHhhC------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578 463 GESVEAIQDLSKALEFE------------PNSADILHERGIVNFKFKDFNAAVEDLSACV 510 (1050)
Q Consensus 463 g~~~eA~~~l~kal~~~------------p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al 510 (1050)
.-|++|...|.-+.... |-+.+.+..++.+...+|+.+-|.....+++
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 34667777766665542 3335556666666666666666666666654
No 342
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.73 E-value=0.44 Score=48.93 Aligned_cols=59 Identities=15% Similarity=0.141 Sum_probs=52.6
Q ss_pred HHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 001578 78 CYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQ 136 (1050)
Q Consensus 78 ~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~ 136 (1050)
...+.++...|...+.+|+++.|.+...++|+|.--.+-|+++.|.+.|++.+++.|+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 45677889999999999999999999999999999999999999999999998777765
No 343
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.58 E-value=22 Score=41.87 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=35.3
Q ss_pred cCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578 394 EGKYASAISIFDQILKE------------DPMYPEALIGRGTARAFQRELEAAISDFTEAI 442 (1050)
Q Consensus 394 ~g~~~~Ai~~~~~al~~------------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 442 (1050)
...|++|...|.-+... .|.+.+.++.++.+...+|+.+-|....++++
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 34567777777766543 36667788888888888888887777777765
No 344
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.48 E-value=48 Score=38.59 Aligned_cols=224 Identities=12% Similarity=-0.048 Sum_probs=128.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001578 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (1050)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (1050)
+.+-..+..+-..+-..-...-...++.+.+... .+-.+++.++.+|... ..++-...+++..+.+-++...-..++.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 3333344444444444444555566777777655 5578899999999988 5577788899999998888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC-C--CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcC
Q 001578 458 ARAALGESVEAIQDLSKALEFE-P--NSADILHERGIVNF-KFKDFNAAVEDLSACVKLDKE-NKS-AYTYLGLALSSIG 531 (1050)
Q Consensus 458 ~~~~~g~~~eA~~~l~kal~~~-p--~~~~~~~~lg~~~~-~~g~~~~A~~~l~~al~~~p~-~~~-~~~~la~~~~~~g 531 (1050)
.|.. ++...+..+|.+++... | .++.+.-....+-. --.+.+.-+....+.-..... ... ++..+-.-|....
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 8877 88899999999988653 2 11111111111111 122333333333222221111 111 1222223345566
Q ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001578 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (1050)
Q Consensus 532 ~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~a 611 (1050)
++.+|++.+...++.+..+..+.-++...+...-+ +-.+.+-|.....+-..-.++.+|+..|++.
T Consensus 220 N~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~--------------~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~ 285 (711)
T COG1747 220 NWTEAIRILKHILEHDEKDVWARKEIIENLRDKYR--------------GHSQLEEYLKISNISQSGRNFFEALNDFEKL 285 (711)
T ss_pred CHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhc--------------cchhHHHHHHhcchhhccccHHHHHHHHHHH
Confidence 77777777777777777766665555443332110 0011222333344444456788888888888
Q ss_pred HhcCCCC
Q 001578 612 LGIDPSN 618 (1050)
Q Consensus 612 l~~~p~~ 618 (1050)
+..+..+
T Consensus 286 m~f~eGn 292 (711)
T COG1747 286 MHFDEGN 292 (711)
T ss_pred heeccCc
Confidence 8776655
No 345
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.37 E-value=3.1 Score=48.94 Aligned_cols=97 Identities=16% Similarity=0.045 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001578 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (1050)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 455 (1050)
..+...|.-.++..+|..+++.|...+...|.+ +.....++.||..+.+.+.|.++++.|-+.+|.++-....+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 345567778888889999999999888766654 44566788888889999999999999999998888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Q 001578 456 GQARAALGESVEAIQDLSKALEF 478 (1050)
Q Consensus 456 a~~~~~~g~~~eA~~~l~kal~~ 478 (1050)
..+....|.-++|+.+.......
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 88888888888888888776654
No 346
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.30 E-value=4.8 Score=38.20 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=61.7
Q ss_pred CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001578 378 SISVDFRLSRGIAQVNEG---KYASAISIFDQILK-EDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452 (1050)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g---~~~~Ai~~~~~al~-~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 452 (1050)
..+....+.+|.++.... +..+.+.+++.+++ .+|. .-+..+.+|..+++.++|+.++.+.+..++..|++..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 455777888888888755 45678889999886 4444 356788899999999999999999999999999987765
Q ss_pred HHH
Q 001578 453 KRR 455 (1050)
Q Consensus 453 ~~l 455 (1050)
...
T Consensus 109 ~Lk 111 (149)
T KOG3364|consen 109 ELK 111 (149)
T ss_pred HHH
Confidence 433
No 347
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=89.27 E-value=18 Score=42.89 Aligned_cols=84 Identities=14% Similarity=0.090 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001578 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595 (1050)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 595 (1050)
+.+.+..++..+.....+.-|.+.|.+.-. ...+..++...+++++|....++.-+.- +.+|+-.|+-+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHh
Confidence 344444445555555555555555544311 1123344556667777666554432222 34566666666
Q ss_pred HHCCCHHHHHHHHHH
Q 001578 596 HGLGQHKKAIKDLSS 610 (1050)
Q Consensus 596 ~~~g~~~eAi~~l~~ 610 (1050)
....++++|.+.|.+
T Consensus 815 AE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHK 829 (1081)
T ss_pred hhhhhHHHHHHHHHH
Confidence 666666666655544
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.22 E-value=14 Score=43.35 Aligned_cols=158 Identities=15% Similarity=0.050 Sum_probs=87.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 001578 389 IAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467 (1050)
Q Consensus 389 ~~~~~~g~~~~Ai~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 467 (1050)
......|+++++....+.. +.-|.- ..-....+..+..+|..+.|+.... +++..+ .+..+.|+.+.
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rF---eLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRF---ELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHH---HHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHh---HHHHhcCCHHH
Confidence 3445678999988877522 222322 3445666777777888887776533 233333 34567788888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001578 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547 (1050)
Q Consensus 468 A~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 547 (1050)
|.+..++ .+++..|..+|...+.+|+++-|.++|.++- -+..+..+|...|+.+.-.+....+....
T Consensus 337 A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 8775432 3467788888888888888888888888752 23556667777777655555544444332
Q ss_pred cCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001578 548 RNFLEAWGHLTQFYQDLANSEKALECLQQ 576 (1050)
Q Consensus 548 p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 576 (1050)
.. ...-.++...|+.++.++.+.+
T Consensus 404 ~~-----n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 DI-----NIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -H-----HHHHHHHHHHT-HHHHHHHHHH
T ss_pred CH-----HHHHHHHHHcCCHHHHHHHHHH
Confidence 21 1112334456777666665544
No 349
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.89 E-value=11 Score=42.53 Aligned_cols=126 Identities=14% Similarity=0.155 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC----CCHHHHHH
Q 001578 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN--SEKALECLQQVLYIDKRFSKAYHLRGLLLHGL----GQHKKAIK 606 (1050)
Q Consensus 533 ~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~----g~~~eAi~ 606 (1050)
.++-+.+...+++.+|+...+|+....++.+.+. +..-+.+.+++++.+|.+..+|..+-.+.... ....+-++
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ 170 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE 170 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence 4455566666677777777777777666665543 45666667777777776655555443333322 12455566
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH------ccC------HHHHHHHHHHHHHhcCCCHHHHHH
Q 001578 607 DLSSGLGIDPSNIECLYLRASCYHA------IGE------YREAIKDYDAALDLELDSMEKFVL 658 (1050)
Q Consensus 607 ~l~~al~~~p~~~~~~~~la~~~~~------~g~------~~eA~~~~~~al~l~p~~~~~~~~ 658 (1050)
+..+++..++.|..+|.++..++.. .|+ ...-++.-..|+-.+|++...|.+
T Consensus 171 ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 171 FTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 6666776666666666666655542 221 223344555566666666655443
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.78 E-value=2.2 Score=36.41 Aligned_cols=58 Identities=10% Similarity=0.023 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCcHH----HHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 001578 41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCDKALQL 98 (1050)
Q Consensus 41 ~~~~~~~~~~~~~~Ai~~y~~ai~~~~~~~~----~~nra~~~~~~~~~~~Ai~~~~~Al~l 98 (1050)
.+|-++|.+.+.++|+..++++++..+++.. +..++.+|...|+|.+++....+-+++
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999999988855544 445677888999999998877765554
No 351
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.74 E-value=39 Score=36.65 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 001578 482 SADILHERGIVNFKFKDFNAAVEDL 506 (1050)
Q Consensus 482 ~~~~~~~lg~~~~~~g~~~~A~~~l 506 (1050)
+++.+..+|..+.+.|++.+|..+|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5666777777777777666666555
No 352
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=88.68 E-value=43 Score=37.00 Aligned_cols=273 Identities=14% Similarity=0.097 Sum_probs=165.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CC--CCH
Q 001578 419 IGRGTARAFQRELEAAISDFTEAIQS--NPSA--------GEAWKRRGQARAALGESVEAIQDLSKALEF---EP--NSA 483 (1050)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~eA~~~l~kal~~---~p--~~~ 483 (1050)
...+.......+.++++..+...+.. .|.. ......++..+...|+..+-.......-.. -+ ..+
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 44555556667778888888888874 1211 235678999999999987766655544322 11 112
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----Cc--Cc
Q 001578 484 DILHERGIVNF-KFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQL----DR--NF 550 (1050)
Q Consensus 484 ~~~~~lg~~~~-~~g~~~~A~~~l~~al~~~p~~~------~~~~~la~~~~~~g~~~eA~~~l~~al~~----~p--~~ 550 (1050)
.+...+-.... .-+..+.-+..+..+++...... ..-..+..+|...++|.+|+......+.- +. .-
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL 167 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL 167 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence 22222222222 23345556666666666543322 23346788899999999999887776543 21 22
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHH
Q 001578 551 LEAWGHLTQFYQDLANSEKALECLQQVLYI-----DKRFS--KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP---SNIE 620 (1050)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~-----~p~~~--~~~~~la~~~~~~g~~~eAi~~l~~al~~~p---~~~~ 620 (1050)
.+++..-..+|....+..+|...+..|-.. .|... ..-..-|.++....+|.-|..+|-+|++-.. ++..
T Consensus 168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~ 247 (411)
T KOG1463|consen 168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK 247 (411)
T ss_pred eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence 456666677888888999988888776433 12111 1222336666677899999999999987532 1223
Q ss_pred ---HHHHHHHHHHHccCHHHHHHHH--HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHH
Q 001578 621 ---CLYLRASCYHAIGEYREAIKDY--DAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKE 695 (1050)
Q Consensus 621 ---~~~~la~~~~~~g~~~eA~~~~--~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e 695 (1050)
++..+-.|-..++..++-...+ +.+++....+.++....+.++-++. +..|+.|+..|..-+.-||--..
T Consensus 248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRS-----LkdF~~AL~~yk~eL~~D~ivr~ 322 (411)
T KOG1463|consen 248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRS-----LKDFEKALADYKKELAEDPIVRS 322 (411)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCc-----HHHHHHHHHHhHHHHhcChHHHH
Confidence 3334444555566666644443 4555554445544433333433333 36789999999888888877665
Q ss_pred H
Q 001578 696 Y 696 (1050)
Q Consensus 696 ~ 696 (1050)
+
T Consensus 323 H 323 (411)
T KOG1463|consen 323 H 323 (411)
T ss_pred H
Confidence 5
No 353
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.34 E-value=3.3 Score=48.67 Aligned_cols=90 Identities=13% Similarity=0.014 Sum_probs=44.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001578 523 LGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (1050)
Q Consensus 523 la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 596 (1050)
-|.-+++..+|..+++.|...+...|.+ ......++.+|..+.+.+.|.+++++|-+.+|.++-....+-.+..
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL 439 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 3444444555555555555555444432 2333444555555555555555555555555555444444444444
Q ss_pred HCCCHHHHHHHHHHHH
Q 001578 597 GLGQHKKAIKDLSSGL 612 (1050)
Q Consensus 597 ~~g~~~eAi~~l~~al 612 (1050)
..|.-++|+.......
T Consensus 440 ~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 440 AEDKSEEALTCLQKIK 455 (872)
T ss_pred HhcchHHHHHHHHHHH
Confidence 4555555555544443
No 354
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.02 E-value=12 Score=39.89 Aligned_cols=100 Identities=17% Similarity=0.055 Sum_probs=68.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001578 589 HLRGLLLHGLGQHKKAIKDLSSGLGI------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662 (1050)
Q Consensus 589 ~~la~~~~~~g~~~eAi~~l~~al~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~ 662 (1050)
..+..++++.|+|.+|+....-.+.- .+.-.+++..-..+|....+..++...+..|-.....-.-.-...+..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 45677888999999999887765432 345567888889999999999988888877765432211111223444
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhc
Q 001578 663 FYQKEIALYTASKINSEFCWFDIDGD 688 (1050)
Q Consensus 663 ~~~~g~~~~~~~~~~~A~~~l~~a~~ 688 (1050)
-...|+......+|..|..+|-.+.+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 55567767777788888887765544
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.96 E-value=15 Score=43.04 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=75.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001578 424 ARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502 (1050)
Q Consensus 424 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A 502 (1050)
.....++++++...... -++-|.- ......++..+...|..+.|+... .+++..+.++ .+.|+.+.|
T Consensus 270 ~av~~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A 337 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIA 337 (443)
T ss_dssp HHHHTT-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHH
T ss_pred HHHHcCChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHH
Confidence 34456777777666642 1222222 333455666666677776666542 2444444443 467777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 001578 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (1050)
Q Consensus 503 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 582 (1050)
.+..++ .+++..|..||.....+|+++-|..+|+++-. +..+..+|.-.|+.+.-.+..+.+.....
T Consensus 338 ~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 338 LEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 665432 33566777777777777777777777766421 23444555566665444444444332211
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001578 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (1050)
Q Consensus 583 ~~~~~~~~la~~~~~~g~~~eAi~~l~~ 610 (1050)
+...-.+++..|+.++.++.+.+
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 11122233444555555555543
No 356
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=87.80 E-value=1.2 Score=47.68 Aligned_cols=84 Identities=11% Similarity=-0.015 Sum_probs=63.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 001578 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL-RASCYHAIGEYREAIKDYDAALDLELDS 652 (1050)
Q Consensus 574 l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~-la~~~~~~g~~~eA~~~~~~al~l~p~~ 652 (1050)
|.++-...++++..|...+....+.|.|.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.+++.++|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 334444567777777777777777777888888888888888888887766 4556677788888888888888888888
Q ss_pred HHHHH
Q 001578 653 MEKFV 657 (1050)
Q Consensus 653 ~~~~~ 657 (1050)
|..|+
T Consensus 176 p~iw~ 180 (435)
T COG5191 176 PRIWI 180 (435)
T ss_pred chHHH
Confidence 87653
No 357
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.76 E-value=2.2 Score=45.64 Aligned_cols=68 Identities=18% Similarity=0.123 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHh
Q 001578 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSAD 139 (1050)
Q Consensus 72 ~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~ 139 (1050)
..|.=.+|.+.++++.|....++.+.++|..+..+--+|.+|.++|.+.-|+.+++..++++|+.+..
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 34666789999999999999999999999999999999999999999999999999999999998754
No 358
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.11 E-value=5.1 Score=51.05 Aligned_cols=132 Identities=20% Similarity=0.137 Sum_probs=96.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHC----C---CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 001578 558 TQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGL----G---QHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (1050)
Q Consensus 558 a~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~----g---~~~eAi~~l~~al~~~p~~~~~~~~la~ 627 (1050)
-.++...+.|+.|+..|++.-...|.. .++.+..|..+..+ | .+++|+..|++... .|.-|--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHH
Confidence 345667788899999999888888754 35666777766542 2 46778888876543 5666778889999
Q ss_pred HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC
Q 001578 628 CYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPL 692 (1050)
Q Consensus 628 ~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~ 692 (1050)
+|..+|+++|-+++|.-|++..|++|+.-...-..-|+.-.+.+...+. |....-.++...|.
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 623 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRRE--ALVFMLLALWIAPE 623 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhCcc
Confidence 9999999999999999999999999997766666667776666654443 33333345555554
No 359
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=86.77 E-value=91 Score=38.62 Aligned_cols=252 Identities=8% Similarity=-0.033 Sum_probs=159.6
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCC
Q 001578 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF---QRELEAAISDFTEAIQSNP 446 (1050)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~---~g~~~~A~~~~~~al~~~p 446 (1050)
+......++.+...+..+-..+...|++++-...-.++-+..|..+..|.....-... .++-.++...|++++.. -
T Consensus 102 ~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d-y 180 (881)
T KOG0128|consen 102 LEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD-Y 180 (881)
T ss_pred HHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc-c
Confidence 3444455666677777888888889999888887778888888888887665544332 35677788888888753 3
Q ss_pred CcHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578 447 SAGEAWKRRGQARAAL-------GESVEAIQDLSKALEFEPN-------SADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (1050)
Q Consensus 447 ~~~~~~~~la~~~~~~-------g~~~eA~~~l~kal~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~ 512 (1050)
.....|...+...... ++++.-...|.+++..-.. ....+..+-..|...-..++-+.++...+..
T Consensus 181 ~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~ 260 (881)
T KOG0128|consen 181 NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ 260 (881)
T ss_pred ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 4455666666555443 4566777777777764321 1334555555666665667777777777766
Q ss_pred CCCCHH----HHHHHH--H-HHHHcCCHHHHHHHH-------HHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001578 513 DKENKS----AYTYLG--L-ALSSIGEYKKAEEAH-------LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578 (1050)
Q Consensus 513 ~p~~~~----~~~~la--~-~~~~~g~~~eA~~~l-------~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al 578 (1050)
. -+.. .+.... . ......+++.|...+ .+.++..|.....|..+-......|+.-.-...+++++
T Consensus 261 ~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~ 339 (881)
T KOG0128|consen 261 P-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAV 339 (881)
T ss_pred c-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 5 2221 111111 1 112234444444443 33334444445556666677777888888888888988
Q ss_pred hhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCCHHHHH
Q 001578 579 YIDKRFSKAYHLRGLLL-HGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (1050)
Q Consensus 579 ~~~p~~~~~~~~la~~~-~~~g~~~eAi~~l~~al~~~p~~~~~~~ 623 (1050)
...+.+...|...+..+ ..++-.+.+...+.+++...|-...+|-
T Consensus 340 ~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~ 385 (881)
T KOG0128|consen 340 AEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWK 385 (881)
T ss_pred HhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHH
Confidence 88888888888877665 3455566677778888887776554443
No 360
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.26 E-value=15 Score=41.55 Aligned_cols=132 Identities=16% Similarity=0.227 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc----CChHHHH
Q 001578 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE--YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL----ANSEKAL 571 (1050)
Q Consensus 498 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~--~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~ 571 (1050)
-.++-+.+...+++.+|+...+|+....++.+.+. +..=++..+++++.+|.+..+|...-.+.... ....+-+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 45666777788888888888888888888887664 46678888888888888877765544333322 2356667
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHH------CCC------HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 001578 572 ECLQQVLYIDKRFSKAYHLRGLLLHG------LGQ------HKKAIKDLSSGLGIDPSNIECLYLRASCY 629 (1050)
Q Consensus 572 ~~l~~al~~~p~~~~~~~~la~~~~~------~g~------~~eAi~~l~~al~~~p~~~~~~~~la~~~ 629 (1050)
++..+++..++.+..+|..+..++.. .|+ ...-++.-..|+-.+|++..+|+..-..+
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl 239 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLL 239 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhh
Confidence 78888888888888888887777652 231 23455666677778999998887744333
No 361
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.90 E-value=1.6 Score=31.89 Aligned_cols=30 Identities=33% Similarity=0.523 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578 620 ECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (1050)
Q Consensus 620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 649 (1050)
.++.++|.+|...|++++|..++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467788888888888888888888888764
No 362
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=85.83 E-value=3 Score=37.38 Aligned_cols=59 Identities=15% Similarity=0.076 Sum_probs=44.4
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhCCC---------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 001578 77 FCYSQLELHKHVIRDCDKALQLDPT---------LLQAYILKGCAFSALGRKEEALSVWEKGYEHALH 135 (1050)
Q Consensus 77 ~~~~~~~~~~~Ai~~~~~Al~l~P~---------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~ 135 (1050)
.-.++.|+|..|+..+.+.++.... ..-+.+.+|.+....|++++|+..+++|+.++.+
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3456777888887777776654421 2347888999999999999999999999777643
No 363
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=85.62 E-value=58 Score=36.90 Aligned_cols=125 Identities=18% Similarity=0.042 Sum_probs=80.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCC-C--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHH
Q 001578 426 AFQRELEAAISDFTEAIQSNP-S--------AGEAWKRRGQARAALGESVEAIQDLSKALEFEP------NSADILHERG 490 (1050)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~p-~--------~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p------~~~~~~~~lg 490 (1050)
+.+.++.+|...-+..+..-. . .+..|+.+..+|...|+...-...+...+.... ..+.+...+-
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL 216 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL 216 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence 345788888877766553211 1 234677777788888876655555544443211 1133455566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC--C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 001578 491 IVNFKFKDFNAAVEDLSACVKLD--K--ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (1050)
Q Consensus 491 ~~~~~~g~~~~A~~~l~~al~~~--p--~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 550 (1050)
..|...+.|+.|.....+..--. . .-+..++++|.+..-+++|..|.+++.+|+...|++
T Consensus 217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 77777888888887776654211 1 123456778888888888888888888888888874
No 364
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=85.24 E-value=1.6 Score=31.84 Aligned_cols=29 Identities=28% Similarity=0.216 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001578 104 QAYILKGCAFSALGRKEEALSVWEKGYEH 132 (1050)
Q Consensus 104 ~a~~~~g~~~~~lg~~~~A~~~~~~al~~ 132 (1050)
+.|.++|.+-+..++|++|+.+|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46889999999999999999999999544
No 365
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=85.05 E-value=1.6 Score=46.87 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=41.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Q 001578 478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY-LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555 (1050)
Q Consensus 478 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~-la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~ 555 (1050)
..|+++..|...+....+.+-|.+--..|.+++..+|.+.+.|.. .+.-+...++++.+...+.+++..+|+.+..|.
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 344555555555555555555555555555555555555555544 333344555555555555555555555555443
No 366
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=84.96 E-value=7.5 Score=43.69 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=34.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 001578 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645 (1050)
Q Consensus 590 ~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 645 (1050)
.+..||..+++.+-|+....+.+.++|....-+...|.|+..+.+|.+|...+--+
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666665544433
No 367
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.00 E-value=2.3 Score=31.09 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578 519 AYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (1050)
Q Consensus 519 ~~~~la~~~~~~g~~~eA~~~l~~al~ 545 (1050)
++.++|.+|...|++++|+.++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344444455555555555555444444
No 368
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=83.86 E-value=9.3 Score=41.03 Aligned_cols=69 Identities=22% Similarity=0.168 Sum_probs=39.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 001578 556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624 (1050)
Q Consensus 556 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~ 624 (1050)
++=..+...++++.|..+.++.+.++|.++.-....|.+|.++|.+.-|++.++..++.-|+.+.+-..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 333445555666666666666666666666555566666666666666666666655555555544433
No 369
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.85 E-value=18 Score=37.13 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHH
Q 001578 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKE----NKSAYTYLGLALSSIGEYKKA 536 (1050)
Q Consensus 482 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~~la~~~~~~g~~~eA 536 (1050)
+++..+.+|..|. ..+.++|+..+.+++++.+. +++.+..|+.++..+|+++.|
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444443 33445555555555544322 234444444444444444443
No 370
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=83.45 E-value=75 Score=34.84 Aligned_cols=154 Identities=10% Similarity=-0.077 Sum_probs=91.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001578 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (1050)
Q Consensus 445 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 524 (1050)
+.+....-+.+.+...+..+..+-+.....+++++|..+.++..++.-- ..-..+|...++++++... ..++..
T Consensus 180 d~D~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~s 253 (556)
T KOG3807|consen 180 DTDFLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQS 253 (556)
T ss_pred cccccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhH
Confidence 3344444455566666777778888888888999888888887776532 2345677788888776532 222233
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCC
Q 001578 525 LALSSIGEYKKAEEAHLKAIQLDRNFL--EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQ 600 (1050)
Q Consensus 525 ~~~~~~g~~~eA~~~l~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~g~ 600 (1050)
......|...+|.. + ...+. .+-..++.+..++|+..+|++.++...+..|-. ..++.++-..+....-
T Consensus 254 qq~qh~~~~~da~~------r-RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA 326 (556)
T KOG3807|consen 254 QQCQHQSPQHEAQL------R-RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA 326 (556)
T ss_pred HHHhhhccchhhhh------h-cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 33333333332211 1 11222 233467888888888888888888877766622 2344555555555555
Q ss_pred HHHHHHHHHHH
Q 001578 601 HKKAIKDLSSG 611 (1050)
Q Consensus 601 ~~eAi~~l~~a 611 (1050)
|.+....+-+.
T Consensus 327 YADvqavLakY 337 (556)
T KOG3807|consen 327 YADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHHhh
Confidence 55544444433
No 371
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=83.21 E-value=64 Score=35.67 Aligned_cols=87 Identities=15% Similarity=0.014 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 001578 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--DPSNIECLYLRASCYHAIGEYREAIKDYDA 644 (1050)
Q Consensus 567 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 644 (1050)
+..-..+|.-.....|+ +.+-.|.+.......-...++...+..... -.+....+-..|..+.++|+.++|...|++
T Consensus 312 W~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydr 390 (415)
T COG4941 312 WPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDR 390 (415)
T ss_pred hHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHH
Confidence 33333334333333332 333334444444433444444444443332 112223444455566666666666666666
Q ss_pred HHHhcCCCHH
Q 001578 645 ALDLELDSME 654 (1050)
Q Consensus 645 al~l~p~~~~ 654 (1050)
++.+.++..+
T Consensus 391 Ai~La~~~ae 400 (415)
T COG4941 391 AIALARNAAE 400 (415)
T ss_pred HHHhcCChHH
Confidence 6666655554
No 372
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.11 E-value=12 Score=40.62 Aligned_cols=92 Identities=18% Similarity=0.201 Sum_probs=70.9
Q ss_pred HHHHHHHHh----cCC--HHHHHHHHHHHHhccCCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 001578 40 RIELAKLCS----LRN--WSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113 (1050)
Q Consensus 40 r~~~~~~~~----~~~--~~~Ai~~y~~ai~~~~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~ 113 (1050)
+.++..+|. .++ |..=+....++++... ..++..++..+...|+++.++..+++.+..+|-+-++|.++=.+|
T Consensus 119 ~~~~~~~~~~g~~~~d~~f~~WV~~~R~~l~e~~-~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y 197 (280)
T COG3629 119 FEQAGELLSEGPVLGDDRFDEWVLEQRRALEELF-IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAY 197 (280)
T ss_pred HHHHHHHhhcCCcCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 344455555 333 4444444444443321 244677899999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhh
Q 001578 114 SALGRKEEALSVWEKGYEH 132 (1050)
Q Consensus 114 ~~lg~~~~A~~~~~~al~~ 132 (1050)
+..|+...|+..|++...+
T Consensus 198 ~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 198 LVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHcCCchHHHHHHHHHHHH
Confidence 9999999999999999553
No 373
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=81.89 E-value=61 Score=32.65 Aligned_cols=49 Identities=16% Similarity=0.030 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHh
Q 001578 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI----GEYREAIKDYDAALDL 648 (1050)
Q Consensus 598 ~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~----g~~~eA~~~~~~al~l 648 (1050)
..+.+.|.++-.+|.+++ ++.+.-++...|..- .+-++|..+-.+|.++
T Consensus 181 ~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 181 SKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 345566666666665553 344444444444321 1345555555555554
No 374
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.91 E-value=13 Score=38.09 Aligned_cols=72 Identities=21% Similarity=0.168 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHccCHHHHH
Q 001578 567 SEKALECLQQVLYIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS----NIECLYLRASCYHAIGEYREAI 639 (1050)
Q Consensus 567 ~~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~ 639 (1050)
-++|...|-++-.... +.++..+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.++..+|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3556666555432211 45677777776665 45677778877777776433 3677788888888888877775
No 375
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=80.60 E-value=67 Score=32.35 Aligned_cols=187 Identities=16% Similarity=0.106 Sum_probs=119.5
Q ss_pred CCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCcHHH
Q 001578 378 SISVDFRLSRGIAQVN-EGKYASAISIFDQILKEDPMYPEALIGRGTARAF-----QRELEAAISDFTEAIQSNPSAGEA 451 (1050)
Q Consensus 378 ~~~~~~~~~~a~~~~~-~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~ 451 (1050)
...++....+|..+.. +.+|++|..+|..--+.+ .++...+.+|..++. .+++..|++.+..+-. .+.+.+
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a 107 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA 107 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence 3456777777776643 568888888887765544 345556666655443 4578899999988765 566777
Q ss_pred HHHHHHHHHHc-----C--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001578 452 WKRRGQARAAL-----G--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (1050)
Q Consensus 452 ~~~la~~~~~~-----g--~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 524 (1050)
...+|.++..- + +..+|.+++.++-.+. +..+.++|...|+.-.+ + +....|..... ...+
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~--k-------~~t~ap~~g~p-~~~~ 175 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKE--K-------FKTNAPGEGKP-LDRA 175 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccch--h-------hcccCCCCCCC-cchh
Confidence 77888777643 2 3788999999998765 56666666666654321 1 11113311000 1123
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc----CChHHHHHHHHHHHhhC
Q 001578 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL----ANSEKALECLQQVLYID 581 (1050)
Q Consensus 525 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~l~~al~~~ 581 (1050)
..+....+.+.|.++-.+|-+++ ++.+-.++.+.|..- .+-++|..+-.+|.++.
T Consensus 176 ~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 176 ELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred hhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 34445577888888888887764 456666777776532 35678888888777653
No 376
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=80.35 E-value=7.4 Score=34.86 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=30.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578 391 QVNEGKYASAISIFDQILKEDPM---------YPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (1050)
Q Consensus 391 ~~~~g~~~~Ai~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (1050)
....|+|.+|++.+.+..+.... ...++..+|.++...|++++|+..+++++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45567777777766666653211 1234455555566666666666666666554
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.18 E-value=14 Score=31.71 Aligned_cols=62 Identities=6% Similarity=0.041 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHH
Q 001578 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALI---GRGTARAFQRELEAAISDFTEAIQ 443 (1050)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~---~la~~~~~~g~~~~A~~~~~~al~ 443 (1050)
.-.+..|.-++...+.++|+..+.++++..++.+.-+. .+..+|...|+|.+++.+..+-++
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777888888888888888887766655443 444566677777777766554443
No 378
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=79.99 E-value=1e+02 Score=34.12 Aligned_cols=187 Identities=12% Similarity=-0.011 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475 (1050)
Q Consensus 396 ~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~ka 475 (1050)
--++|+.+-.-+..+.|..++++-.++...++..+...=...=-..+-+...+.. ....+-.+++...+.++
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~--------lW~r~lI~eg~all~rA 282 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRS--------LWDRALIDEGLALLDRA 282 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchh--------hhhHHHHHHHHHHHHHH
Confidence 3468888888888889999998888877766533211100000000001111111 11222345555556665
Q ss_pred HhhCC-CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Q 001578 476 LEFEP-NSADILHERGIVNFK-----FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL--D 547 (1050)
Q Consensus 476 l~~~p-~~~~~~~~lg~~~~~-----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~ 547 (1050)
+.... .-..+.-.++-++.. .-++..-..+|.-.....|+ +-+-.+.+.......-.+.++...+..... -
T Consensus 283 ~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L 361 (415)
T COG4941 283 LASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRL 361 (415)
T ss_pred HHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhccccc
Confidence 55432 111222222222222 22444444555544444443 233334444444444455555555444433 1
Q ss_pred cCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 001578 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591 (1050)
Q Consensus 548 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l 591 (1050)
..+...+...|.++.++|+.++|...|++++.+.++..+..+.+
T Consensus 362 ~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 362 DGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred ccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 22333444566667777777777777777777766655544433
No 379
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.91 E-value=2.5 Score=27.76 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHH
Q 001578 104 QAYILKGCAFSALGRKEEALSVWE 127 (1050)
Q Consensus 104 ~a~~~~g~~~~~lg~~~~A~~~~~ 127 (1050)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356777777777777777776654
No 380
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.18 E-value=13 Score=41.72 Aligned_cols=124 Identities=15% Similarity=0.084 Sum_probs=84.3
Q ss_pred hhhhhhhhchhhhhhHhhhccccchhHH-HHHH--HHHHHH---HHH-HHhcCCHHHHHHHHHHHHhccCCc----HHHH
Q 001578 5 KLLDSRYRLNKTHKTICEIDELVRVDSV-MASA--ITARIE---LAK-LCSLRNWSKAIRILDSLLAQSYEI----QDIC 73 (1050)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~r~~---~~~-~~~~~~~~~Ai~~y~~ai~~~~~~----~~~~ 73 (1050)
..+|.+.+-.+..+.....++|..--.- -... .+.|.. +.. +...|+.+.|+++|.++-....+. ..+.
T Consensus 112 ~~~D~~WvE~~~~~a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~l 191 (466)
T KOG0686|consen 112 YLLDEKWVETNNKKAVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCL 191 (466)
T ss_pred cccchHHHHHhhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHH
Confidence 4567777777777666655555432111 1111 222432 233 456999999999999976655332 2256
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhCC---------CChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578 74 NRAFCYSQLELHKHVIRDCDKALQLDP---------TLLQAYILKGCAFSALGRKEEALSVWEKG 129 (1050)
Q Consensus 74 nra~~~~~~~~~~~Ai~~~~~Al~l~P---------~~~~a~~~~g~~~~~lg~~~~A~~~~~~a 129 (1050)
|.-.+-+-+|+|.+......+|..- | -..+.....|.+.+.+++|..|.+.|-.+
T Consensus 192 n~i~VSI~~~nw~hv~sy~~~A~st-~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 192 NLILVSIYMGNWGHVLSYISKAEST-PDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHhhcchhhhhhHHHHHHhC-chhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7777888999999999998888764 2 12447778899999999999999888666
No 381
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=77.31 E-value=34 Score=39.43 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 001578 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--ALIGR--GTARAFQRELEAAISDFTEAIQS 444 (1050)
Q Consensus 383 ~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~--a~~~l--a~~~~~~g~~~~A~~~~~~al~~ 444 (1050)
.....+..+++.++|..|...++.+...-|.... .+..+ |..+...-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4456788899999999999999999986333333 33333 44455678899999999988765
No 382
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=77.19 E-value=7.1 Score=28.07 Aligned_cols=32 Identities=34% Similarity=0.345 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHH--HHHHHHhcCC
Q 001578 620 ECLYLRASCYHAIGEYREAIKD--YDAALDLELD 651 (1050)
Q Consensus 620 ~~~~~la~~~~~~g~~~eA~~~--~~~al~l~p~ 651 (1050)
+.++.+|..+...|++++|+.. |+-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3455566666666666666666 3355555543
No 383
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=77.15 E-value=1.5e+02 Score=34.36 Aligned_cols=209 Identities=16% Similarity=0.064 Sum_probs=121.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH------HHHHHH-HcCCH---HHHHHHHHHHHHhCCCCH---HHHH
Q 001578 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHE------RGIVNF-KFKDF---NAAVEDLSACVKLDKENK---SAYT 521 (1050)
Q Consensus 455 la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~------lg~~~~-~~g~~---~~A~~~l~~al~~~p~~~---~~~~ 521 (1050)
+-....+.++...|..++.-...++|+....... +-.+.. .-.++ ..=+..++.+-..+-+.. .-+.
T Consensus 304 ~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~ 383 (549)
T PF07079_consen 304 LLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLV 383 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 3344456788888888888888888865321111 011111 11111 122233333333333322 3344
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHH--HHHHHHh---------hCC---CCHH
Q 001578 522 YLGLALSSIGE-YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE--CLQQVLY---------IDK---RFSK 586 (1050)
Q Consensus 522 ~la~~~~~~g~-~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~l~~al~---------~~p---~~~~ 586 (1050)
.-|.-+...|. -++|+..++.+++..+.+.......-.. -...|.+|+. .+-+.+. +.| .+.+
T Consensus 384 ~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~f--vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~e 461 (549)
T PF07079_consen 384 FGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLF--VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEE 461 (549)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHH
Confidence 55666777777 7889999999999988876443322111 1122233322 1222221 222 2344
Q ss_pred HHHHH--HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001578 587 AYHLR--GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664 (1050)
Q Consensus 587 ~~~~l--a~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~ 664 (1050)
.-..+ |..++.+|+|.++.-+-.=..++.| .+.++..+|.|+....+|++|..++...-- +.+--++....++++.
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~-n~~~~dskvqKAl~lC 539 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP-NERMRDSKVQKALALC 539 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC-chhhHHHHHHHHHHHH
Confidence 44444 5557889999999999988899999 799999999999999999999999876422 2222333444555555
Q ss_pred HHH
Q 001578 665 QKE 667 (1050)
Q Consensus 665 ~~g 667 (1050)
++-
T Consensus 540 qKh 542 (549)
T PF07079_consen 540 QKH 542 (549)
T ss_pred HHh
Confidence 543
No 384
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=76.76 E-value=12 Score=40.84 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (1050)
Q Consensus 585 ~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 648 (1050)
..++..++..+...|+++.++..+++.+..+|-+...|..+-..|...|+...|+..|++.-.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567778888888999999999999999999999999999999999999999999988887664
No 385
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=75.18 E-value=94 Score=36.34 Aligned_cols=86 Identities=15% Similarity=0.113 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CC--C---
Q 001578 551 LEAWGHLTQFYQDLANSEKALECLQQVLYI--DKR-----FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-DP--S--- 617 (1050)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~-----~~~~~~~la~~~~~~g~~~eAi~~l~~al~~-~p--~--- 617 (1050)
..+....+.++...+.+.+|...+-+.... ..+ .+-.+...|.++ ..+.. .| .
T Consensus 300 ~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~--------------~~~~~~~~~~~~~r 365 (414)
T PF12739_consen 300 LRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY--------------ASLRSNRPSPGLTR 365 (414)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh--------------cccccCCCCccchh
Confidence 344555666677777777766666555543 211 222333444444 11111 11 1
Q ss_pred ---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC
Q 001578 618 ---NIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650 (1050)
Q Consensus 618 ---~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 650 (1050)
..--+..-|.-|.+.|+...|..+|..|+....
T Consensus 366 ~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 366 FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 112233456788889999999999999888764
No 386
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.95 E-value=1.5e+02 Score=37.76 Aligned_cols=58 Identities=19% Similarity=0.092 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChh----HHHHH-HHHHHHcCCHHHHHHHHHHH
Q 001578 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ----AYILK-GCAFSALGRKEEALSVWEKG 129 (1050)
Q Consensus 72 ~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~----a~~~~-g~~~~~lg~~~~A~~~~~~a 129 (1050)
+...-..++....|++|+..++-....+|.-.. ..... |.-++.+|+|++|++.|.+.
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~ 372 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKS 372 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 444555677777788888877776666664322 11222 66688999999999999988
No 387
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=74.74 E-value=5 Score=29.25 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578 620 ECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (1050)
Q Consensus 620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 649 (1050)
+++..||.+-...++|++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467778888888888888888888888764
No 388
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.69 E-value=1.4e+02 Score=32.40 Aligned_cols=93 Identities=16% Similarity=0.115 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhC------CCc
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKE-----DPMYPEALIGRGTARAFQRELE-AAISDFTEAIQSN------PSA 448 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~-----~p~~~~a~~~la~~~~~~g~~~-~A~~~~~~al~~~------p~~ 448 (1050)
.+.++.-|..+++.|++.-|.++..-.++. .+.+......++.+....+.-+ +-..+..++++-. -.+
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence 566777788888888888887776655543 2344555566666666554322 2334444454432 246
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 001578 449 GEAWKRRGQARAALGESVEAIQDLS 473 (1050)
Q Consensus 449 ~~~~~~la~~~~~~g~~~eA~~~l~ 473 (1050)
++.+..+|..+.+.|++.+|..+|-
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHH
Confidence 7899999999999999988887764
No 389
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=73.60 E-value=81 Score=33.90 Aligned_cols=26 Identities=8% Similarity=-0.026 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578 384 RLSRGIAQVNEGKYASAISIFDQILK 409 (1050)
Q Consensus 384 ~~~~a~~~~~~g~~~~Ai~~~~~al~ 409 (1050)
.+.+..+++..|+..+|+.-++.=+.
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~ 38 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHID 38 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34555677777777777777776554
No 390
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=72.94 E-value=96 Score=36.26 Aligned_cols=29 Identities=14% Similarity=-0.028 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001578 384 RLSRGIAQVNEGKYASAISIFDQILKEDP 412 (1050)
Q Consensus 384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p 412 (1050)
.-.+|...+-.|+|+-|...|+.+.+..-
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~ 239 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFK 239 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHh
Confidence 34689999999999999999999887543
No 391
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=72.71 E-value=11 Score=41.14 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Q 001578 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563 (1050)
Q Consensus 502 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~ 563 (1050)
|..+|.+|+.+.|.+...++.+|.++...|+.-.|+-+|-+++......+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45666667777777767777777776666666667666666665554456666666666555
No 392
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=72.64 E-value=12 Score=26.97 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHH
Q 001578 383 FRLSRGIAQVNEGKYASAISI 403 (1050)
Q Consensus 383 ~~~~~a~~~~~~g~~~~Ai~~ 403 (1050)
.++.+|..+..+|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555555
No 393
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.36 E-value=43 Score=41.30 Aligned_cols=206 Identities=14% Similarity=0.060 Sum_probs=113.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 001578 421 RGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499 (1050)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~ 499 (1050)
.-..+.+..-|+-|+...+.- ..+++. ..++...|..++..|++++|...|-+.+..-.. +.+. .-+......
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-s~Vi----~kfLdaq~I 413 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-SEVI----KKFLDAQRI 413 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-HHHH----HHhcCHHHH
Confidence 344556666777777665432 222222 456777888888899999999988888765321 1111 112333344
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH---HHHHHHHHHcCChHHHHHHHHH
Q 001578 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW---GHLTQFYQDLANSEKALECLQQ 576 (1050)
Q Consensus 500 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~l~~ 576 (1050)
.+-..+++...+..-.+.+--..|-.+|.++++.+.-.++.++ .+. .... -..-.++.+.+-+++|.-...+
T Consensus 414 knLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDK-GEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCC-cceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 4555566666665555555556677788888887765544443 231 1110 0111233344444555443333
Q ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578 577 VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYDAALDL 648 (1050)
Q Consensus 577 al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~l 648 (1050)
.- .+. ..+-.++..+++|++|+.++... .|.. .......|..+... ..++-...+-+.+..
T Consensus 489 ~~----~he---~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~ 550 (933)
T KOG2114|consen 489 FK----KHE---WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELITE 550 (933)
T ss_pred hc----cCH---HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhh
Confidence 21 122 22345567789999999988753 3332 24555667776654 455555555555443
No 394
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.27 E-value=4.5 Score=26.51 Aligned_cols=22 Identities=23% Similarity=0.064 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHH
Q 001578 621 CLYLRASCYHAIGEYREAIKDY 642 (1050)
Q Consensus 621 ~~~~la~~~~~~g~~~eA~~~~ 642 (1050)
+.+.+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555544
No 395
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=71.88 E-value=1.7e+02 Score=37.99 Aligned_cols=109 Identities=17% Similarity=0.025 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH---HHHHHHH
Q 001578 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW---GHLTQFY 561 (1050)
Q Consensus 485 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~---~~la~~~ 561 (1050)
++...|..+...+.+++|.-.|+.+=++ -.--.+|...|++.+|+....+. .+.-.... ..|+.-+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl--------ekAl~a~~~~~dWr~~l~~a~ql---~~~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL--------EKALKAYKECGDWREALSLAAQL---SEGKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH--------HHHHHHHHHhccHHHHHHHHHhh---cCCHHHHHHHHHHHHHHH
Confidence 4555566666666666665555443221 11112334445555554443332 22222222 5566667
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001578 562 QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (1050)
Q Consensus 562 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~a 611 (1050)
..++++-+|.++....+.. |. ++ -..|.+...|++|+.....+
T Consensus 1010 ~e~~kh~eAa~il~e~~sd-~~--~a----v~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD-PE--EA----VALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHcccchhHHHHHHHHhcC-HH--HH----HHHHhhHhHHHHHHHHHHhc
Confidence 7777777777777665432 11 11 12234445566666655443
No 396
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.95 E-value=11 Score=40.56 Aligned_cols=57 Identities=23% Similarity=0.196 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129 (1050)
Q Consensus 73 ~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~a 129 (1050)
...+..|+..|.+.+|+..|++++.+||-+...+..+-+.|..+|+-=.|.+.|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 445678999999999999999999999999999999999999999999999999887
No 397
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=68.68 E-value=3.7e+02 Score=35.15 Aligned_cols=24 Identities=21% Similarity=-0.176 Sum_probs=12.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Q 001578 623 YLRASCYHAIGEYREAIKDYDAAL 646 (1050)
Q Consensus 623 ~~la~~~~~~g~~~eA~~~~~~al 646 (1050)
..|+.-+...+++.+|-+.....+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh
Confidence 445555555555555555544443
No 398
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=68.17 E-value=16 Score=39.89 Aligned_cols=62 Identities=10% Similarity=0.020 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 001578 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (1050)
Q Consensus 570 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~ 631 (1050)
|..+|.+|+.+.|+....|+.+|.++...|+.-.|+-+|-+++......+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34444455555555555555555555444555555544444444333334444444444444
No 399
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.14 E-value=3.1e+02 Score=34.12 Aligned_cols=123 Identities=10% Similarity=-0.107 Sum_probs=77.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 001578 558 TQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633 (1050)
Q Consensus 558 a~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g 633 (1050)
+..-....+.+.|...+.+......-. ..+...+|.-....+...+|...+..+..... +.+.......+-...+
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHcc
Confidence 333445667788888888754444322 22344455444444336778888887654432 3344444444555888
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 001578 634 EYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGD 688 (1050)
Q Consensus 634 ~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~ 688 (1050)
+.+.+...+... |.... ......|..|.++...|+-++|...|..+..
T Consensus 327 dw~~~~~~i~~L----~~~~~---~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 327 DRRGLNTWLARL----PMEAK---EKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CHHHHHHHHHhc----CHhhc---cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 988877776663 22211 2346788899998889999999999988744
No 400
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=67.64 E-value=79 Score=34.03 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 001578 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYREAIKDYDAA 645 (1050)
Q Consensus 586 ~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~a 645 (1050)
.....+|..|+..|++++|+.+|+.+....... ..++..+..|+..+|+.++.+.+.-+.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345677888888888888888888886543321 356677788888888887777655443
No 401
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=67.22 E-value=73 Score=34.03 Aligned_cols=29 Identities=10% Similarity=0.272 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001578 384 RLSRGIAQVNEGKYASAISIFDQILKEDP 412 (1050)
Q Consensus 384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p 412 (1050)
++.+|....+.|+|++++.++.+++..++
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 34455555555555555555555555543
No 402
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=66.83 E-value=55 Score=35.49 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 001578 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647 (1050)
Q Consensus 587 ~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 647 (1050)
.+...+..|...|.+.+|+++.++++.++|-+...+..+-.++..+|+--.|.+.|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445677788899999999999999999999999999999999999998888888776543
No 403
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=66.11 E-value=3.3e+02 Score=33.70 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=15.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHhhccCCC
Q 001578 666 KEIALYTASKINSEFCWFDIDGDIDPL 692 (1050)
Q Consensus 666 ~g~~~~~~~~~~~A~~~l~~a~~l~p~ 692 (1050)
....++..++++.|+..+++.. +=|.
T Consensus 511 ~ff~~~~~g~~~~AL~~i~~L~-liP~ 536 (613)
T PF04097_consen 511 EFFDLYHAGQYEQALDIIEKLD-LIPL 536 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHHTT--S-S
T ss_pred HHHHHHHcCCHHHHHHHHHhCC-CCCC
Confidence 3445677899999999886443 4453
No 404
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=65.79 E-value=67 Score=34.30 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=18.3
Q ss_pred CCCCHH---HHHHHHHHH-HHccCHHHHHHHHHHHHHh
Q 001578 615 DPSNIE---CLYLRASCY-HAIGEYREAIKDYDAALDL 648 (1050)
Q Consensus 615 ~p~~~~---~~~~la~~~-~~~g~~~eA~~~~~~al~l 648 (1050)
.|.+|- ...+.+..| ..+|+.++|++..++|++.
T Consensus 161 ~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 161 PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 455542 333344433 4477777777776666654
No 405
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=65.34 E-value=1.9e+02 Score=33.51 Aligned_cols=59 Identities=20% Similarity=0.142 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 001578 554 WGHLTQFYQDLANSEKALECLQQVLYID---------KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (1050)
Q Consensus 554 ~~~la~~~~~~g~~~~A~~~l~~al~~~---------p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~ 613 (1050)
...+.+++.-+|||..|++.++.. +++ +-+...++..|-+|..+++|.+|++.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788888888777653 111 22345678888888888888888888887764
No 406
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.20 E-value=77 Score=39.26 Aligned_cols=246 Identities=15% Similarity=0.015 Sum_probs=141.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCC
Q 001578 387 RGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQS-NPSAGEAWKRRGQARAALGE 464 (1050)
Q Consensus 387 ~a~~~~~~g~~~~Ai~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~ 464 (1050)
.-..+++..-|.-|+.+.+.- ..+++. ...+...|..++..|++++|...|-+.+.. +|...--. +....+
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~k------fLdaq~ 412 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKK------FLDAQR 412 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHH------hcCHHH
Confidence 344567788888888876653 222222 456778899999999999999999998864 33221111 122233
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHH
Q 001578 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA--YTYLGLALSSIGEYKKAEEAHLK 542 (1050)
Q Consensus 465 ~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~--~~~la~~~~~~g~~~eA~~~l~~ 542 (1050)
..+-..+++...+..-.+.+-...|-.+|.++++.++-.++.++ .+..... .-..-.++.+.+-.++|.....+
T Consensus 413 IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 44445566666665555555566778899999998876655544 3311100 11112333444444554443333
Q ss_pred HHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CCCH
Q 001578 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-D-PSNI 619 (1050)
Q Consensus 543 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eAi~~l~~al~~-~-p~~~ 619 (1050)
.- .+. ..+-.++...++|++|+.++... .|.. .......|..+... .+++-...+-+.+.. . +...
T Consensus 489 ~~----~he---~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~~~~ 557 (933)
T KOG2114|consen 489 FK----KHE---WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQGKG 557 (933)
T ss_pred hc----cCH---HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCCCCC
Confidence 21 112 22335567789999999998753 2222 24456677777663 455555555555443 2 1111
Q ss_pred HHHH----HHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578 620 ECLY----LRASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 620 ~~~~----~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
.... -.-.+..-.+++..-..+++...+..|+.++
T Consensus 558 ~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 558 KSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred chhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 1111 1223334566788777788878888888766
No 407
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.79 E-value=80 Score=38.43 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC-CCc
Q 001578 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP------EALIGRGTARAF---QRELEAAISDFTEAIQSN-PSA 448 (1050)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~------~a~~~la~~~~~---~g~~~~A~~~~~~al~~~-p~~ 448 (1050)
..++....+-..|....+|+.-+++.+.+-. -|+.. ...+..+.++-+ -|+-++|+...-.+++.. |..
T Consensus 199 L~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 199 LHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred cCHHHHHHHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 3455555555555555566555555444322 22211 111112222211 245555555555555443 223
Q ss_pred HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCC
Q 001578 449 GEAWKRRGQARAAL---------GESVEAIQDLSKALEFEP 480 (1050)
Q Consensus 449 ~~~~~~la~~~~~~---------g~~~eA~~~l~kal~~~p 480 (1050)
++.+...|++|..+ +..+.|+++|+++++..|
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP 318 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEP 318 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCc
Confidence 44444444444322 234445555555555555
No 408
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=64.11 E-value=19 Score=41.46 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhC---------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578 73 CNRAFCYSQLELHKHVIRDCDKALQLD---------PTLLQAYILKGCAFSALGRKEEALSVWEKGY 130 (1050)
Q Consensus 73 ~nra~~~~~~~~~~~Ai~~~~~Al~l~---------P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al 130 (1050)
..+..++.-+|||..|++..+. |+++ +-++..+|..|-+|+.+++|.+|++.|...+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566678889999999997655 4444 3456689999999999999999999999995
No 409
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.06 E-value=4.1e+02 Score=34.03 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCcHH------HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHH
Q 001578 39 ARIELAKLCSLRNWSKAIRILDSLLAQSYEIQD------ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108 (1050)
Q Consensus 39 ~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~~~~~------~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~ 108 (1050)
.+.+.-.++....|++|+..-+-....+|.... ....|.-++..++|++|+..+.+ ++.+|..+..+|-
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~-~~~d~~~vi~lfP 384 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEK-SEIDPRHVISLFP 384 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh-hccChHHHHHhch
Confidence 456677788888899999865543332221111 22336778899999999999988 5668866655554
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.06 E-value=1.5e+02 Score=34.30 Aligned_cols=131 Identities=12% Similarity=0.003 Sum_probs=66.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCH--HHHHHHH--HHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHH
Q 001578 556 HLTQFYQDLANSEKALECLQQVLYIDKRFS--KAYHLRG--LLLHGLGQHKKAIKDLSSGLGIDPS---NIECLYLRASC 628 (1050)
Q Consensus 556 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~--~~~~~la--~~~~~~g~~~eAi~~l~~al~~~p~---~~~~~~~la~~ 628 (1050)
..+..++..++|..|...+..+...-|... ..+..++ ..+...-++.+|.+.++..+...-. ....+..+..+
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~ 215 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEV 215 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 444555667777777777777666423222 2333333 3345677788888888877664211 11222222222
Q ss_pred HHHccCHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCC
Q 001578 629 YHAIGEYREAIKDYDAALDLELDSMEK-FVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLF 693 (1050)
Q Consensus 629 ~~~~g~~~eA~~~~~~al~l~p~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~ 693 (1050)
. ++...+............. .......++..+.-....|+|+.|+..+-+++++--..
T Consensus 216 ~-------~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~ 274 (379)
T PF09670_consen 216 L-------KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQH 274 (379)
T ss_pred H-------HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 2 2222222222222111100 11222334445555567899999999888888765443
No 411
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.95 E-value=1.1e+02 Score=34.00 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhCCCCHHH-H--HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHH
Q 001578 468 AIQDLSKALEFEPNSADI-L--HERGIVNFKFKDFNAAVEDLSACVKL---DKEN----KSAYTYLGLALSSIGEYKKAE 537 (1050)
Q Consensus 468 A~~~l~kal~~~p~~~~~-~--~~lg~~~~~~g~~~~A~~~l~~al~~---~p~~----~~~~~~la~~~~~~g~~~eA~ 537 (1050)
+...|+++.+.-|+.... + ..-|.+++..++|.+....+..+-.. ..+. +.+-...|.....-
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vND------- 112 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMIND------- 112 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhcc-------
Confidence 445677777776654332 2 23577777777777776666554332 1110 01111112111111
Q ss_pred HHHHHHHHhCcCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 001578 538 EAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (1050)
Q Consensus 538 ~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 580 (1050)
...+..|.. .-..+.+|.-|....+++.|+--|+++...
T Consensus 113 ----Ni~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 113 ----NVRAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred ----chhhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 111112222 234456777788888888888888877653
No 412
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=62.90 E-value=81 Score=30.14 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=48.8
Q ss_pred hcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHH-HhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 001578 48 SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYS-QLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVW 126 (1050)
Q Consensus 48 ~~~~~~~Ai~~y~~ai~~~~~~~~~~nra~~~~-~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~ 126 (1050)
..|+..+-+.+|-+. ....-|..+|.-++ ..|+-++--+.+....+.+...+..++.+|.+|-.+|...+|-+.+
T Consensus 68 ~C~NlKrVi~C~~~~----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 68 KCGNLKRVIECYAKR----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp G-S-THHHHHHHHHT----T---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hhcchHHHHHHHHHh----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 447777777777653 22344788888444 4555544444555555455567889999999999999999999999
Q ss_pred HHH
Q 001578 127 EKG 129 (1050)
Q Consensus 127 ~~a 129 (1050)
++|
T Consensus 144 ~~A 146 (161)
T PF09205_consen 144 KEA 146 (161)
T ss_dssp HHH
T ss_pred HHH
Confidence 998
No 413
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=61.84 E-value=4.1e+02 Score=33.30 Aligned_cols=217 Identities=11% Similarity=0.053 Sum_probs=135.0
Q ss_pred HHhhccCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHHH
Q 001578 371 TRISKSKSISVDFRLSRGIAQV---NEGKYASAISIFDQILKEDPMYPEALIGRGTARAF-------QRELEAAISDFTE 440 (1050)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~---~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~-------~g~~~~A~~~~~~ 440 (1050)
..+..-.|..+..|+....... ..++-.++...|++++... +.+..|...+..... .++++.....|.+
T Consensus 137 ~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~r 215 (881)
T KOG0128|consen 137 LEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFER 215 (881)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHH
Confidence 4444556666666665544433 3467788888899988643 455666666655543 3567788888888
Q ss_pred HHHhCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----HHHHH---HHHHHcCCHHHHHHHH
Q 001578 441 AIQSNPS-------AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI----LHERG---IVNFKFKDFNAAVEDL 506 (1050)
Q Consensus 441 al~~~p~-------~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~----~~~lg---~~~~~~g~~~~A~~~l 506 (1050)
++..-.. ..+.+..+-..|...-..++-+.++...+... -+.++ +.... .......+++.|..-+
T Consensus 216 al~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l 294 (881)
T KOG0128|consen 216 ALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNL 294 (881)
T ss_pred HHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHH
Confidence 8865322 23455566666666666677788888877764 23221 22222 1223445666666654
Q ss_pred HHHHH-------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HcCChHHHHHHHHHHH
Q 001578 507 SACVK-------LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ-DLANSEKALECLQQVL 578 (1050)
Q Consensus 507 ~~al~-------~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~al 578 (1050)
.+.+. ..+.....|..+-......|+.-.-...+++++.-.+.+...|...+...- .++-.+.+...+-+++
T Consensus 295 ~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~ 374 (881)
T KOG0128|consen 295 AKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAV 374 (881)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhh
Confidence 44433 333334455566666677888888888889998888888888888776543 3445556667777777
Q ss_pred hhCCCCHHHHH
Q 001578 579 YIDKRFSKAYH 589 (1050)
Q Consensus 579 ~~~p~~~~~~~ 589 (1050)
...|-....|.
T Consensus 375 R~cp~tgdL~~ 385 (881)
T KOG0128|consen 375 RSCPWTGDLWK 385 (881)
T ss_pred cCCchHHHHHH
Confidence 77775544443
No 414
>PF13041 PPR_2: PPR repeat family
Probab=60.52 E-value=22 Score=27.28 Aligned_cols=33 Identities=6% Similarity=0.220 Sum_probs=23.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcc--CCcHHHHH
Q 001578 42 ELAKLCSLRNWSKAIRILDSLLAQS--YEIQDICN 74 (1050)
Q Consensus 42 ~~~~~~~~~~~~~Ai~~y~~ai~~~--~~~~~~~n 74 (1050)
-+..+++.|++++|.++|++..+.. |+...|.-
T Consensus 9 li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~ 43 (50)
T PF13041_consen 9 LISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNI 43 (50)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 4566778888888888888887776 55555543
No 415
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=60.28 E-value=30 Score=33.58 Aligned_cols=54 Identities=22% Similarity=0.138 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH
Q 001578 69 IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEA 122 (1050)
Q Consensus 69 ~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A 122 (1050)
......+|...+..|++.-|...++.++..+|++..+...++.+|.++|.-.+.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 344567888899999999999999999999999999999999999998865543
No 416
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=59.85 E-value=3.7e+02 Score=33.27 Aligned_cols=151 Identities=14% Similarity=0.125 Sum_probs=60.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH---HHH---HH
Q 001578 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG---QAR---AA 461 (1050)
Q Consensus 388 a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la---~~~---~~ 461 (1050)
-.+++-.|+|+.|++++-+ .+.+..--..+|.++...|-+...-..-...+..++.++.. .+++ ..| +.
T Consensus 265 f~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHHHHh
Confidence 3457778999999999877 22333223344555555554443333335555555544221 2222 222 23
Q ss_pred cCCHHHHHHHHHHHHhhC-CCCHH-HHHHHHHHHHHcCCHHHH--------------HHHHHHHHHhCCCCH---HHHHH
Q 001578 462 LGESVEAIQDLSKALEFE-PNSAD-ILHERGIVNFKFKDFNAA--------------VEDLSACVKLDKENK---SAYTY 522 (1050)
Q Consensus 462 ~g~~~eA~~~l~kal~~~-p~~~~-~~~~lg~~~~~~g~~~~A--------------~~~l~~al~~~p~~~---~~~~~ 522 (1050)
..+..+|+++|--+-... |.... .+..+..+....++++.= ++-..+.+....... .+...
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~ 419 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQ 419 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHH
Confidence 567888888876544332 22111 233334444444433321 222222222332222 34445
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 001578 523 LGLALSSIGEYKKAEEAHLKA 543 (1050)
Q Consensus 523 la~~~~~~g~~~eA~~~l~~a 543 (1050)
.|.-....|++++|+..|.-|
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 566667778888777766653
No 417
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=59.56 E-value=14 Score=41.01 Aligned_cols=70 Identities=17% Similarity=0.063 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 001578 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624 (1050)
Q Consensus 555 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~ 624 (1050)
.+++.+-...+.+..|+..-..++..++....+++.++..+....++++|++.+..+....|++......
T Consensus 279 ~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~ 348 (372)
T KOG0546|consen 279 RNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEE 348 (372)
T ss_pred cchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHH
Confidence 3455555555555555555555555555555555555555555555555555555555555555444333
No 418
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=58.99 E-value=1.1e+02 Score=33.14 Aligned_cols=125 Identities=13% Similarity=0.106 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCCCCHHHHHHHHHHH------HHCCCHHHHH
Q 001578 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL--ANSEKALECLQQVLYIDKRFSKAYHLRGLLL------HGLGQHKKAI 605 (1050)
Q Consensus 534 ~eA~~~l~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~l~~al~~~p~~~~~~~~la~~~------~~~g~~~eAi 605 (1050)
+.-+.++..+++-+|.+...|...-.++... .++..-+...++.++.++.+...|..+-.++ .....+..-.
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ 170 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL 170 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence 4446667888888888888887776666554 5677777888888888888766665544443 3344455556
Q ss_pred HHHHHHHhcCCCCHHHHHHH---HHHHHHccC------HHHHHHHHHHHHHhcCCCHHHHHH
Q 001578 606 KDLSSGLGIDPSNIECLYLR---ASCYHAIGE------YREAIKDYDAALDLELDSMEKFVL 658 (1050)
Q Consensus 606 ~~l~~al~~~p~~~~~~~~l---a~~~~~~g~------~~eA~~~~~~al~l~p~~~~~~~~ 658 (1050)
++-..++..++.|..+|... -......|+ +++-+++...++-.+|++...+.+
T Consensus 171 eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y 232 (328)
T COG5536 171 EYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGY 232 (328)
T ss_pred HhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhH
Confidence 77777888899888888776 333333444 456677777778889998876543
No 419
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=58.53 E-value=66 Score=33.44 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=51.3
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578 593 LLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 593 ~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
.-+.+.+...+|+...+.-++..|.+......+-.+|.-.|++++|...++-+-++.|++..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34566778888888888888888888888888888888889999998888888888887654
No 420
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=58.35 E-value=32 Score=33.42 Aligned_cols=51 Identities=25% Similarity=0.229 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 431 (1050)
.+..+..|...+..|++.-|.++.+.++..+|++..+...++.++.++|.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 677788888889999999999999999999999999888888888776643
No 421
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.17 E-value=1e+02 Score=36.82 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578 449 GEAWKRRGQARAALGESVEAIQDLSKA 475 (1050)
Q Consensus 449 ~~~~~~la~~~~~~g~~~eA~~~l~ka 475 (1050)
..-|..||.+....+++..|.+++.++
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 344555555555555555555555554
No 422
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=53.83 E-value=2.9e+02 Score=29.02 Aligned_cols=59 Identities=17% Similarity=0.082 Sum_probs=42.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 001578 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (1050)
Q Consensus 492 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 550 (1050)
-+.+.+...+|+...+.-++..|.+......+-.++.-.|++++|...++-+-.+.|++
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34556677777777777777777777777777777777777777777777777777765
No 423
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=52.37 E-value=23 Score=26.75 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=23.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 001578 622 LYLRASCYHAIGEYREAIKDYDAALD 647 (1050)
Q Consensus 622 ~~~la~~~~~~g~~~eA~~~~~~al~ 647 (1050)
.+.+|.+|..+|+.+.|.+.++.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36799999999999999999999995
No 424
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=52.15 E-value=2.9e+02 Score=31.73 Aligned_cols=55 Identities=18% Similarity=0.085 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHH--HHHHcCCHHHHHHHHHH
Q 001578 386 SRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGT--ARAFQRELEAAISDFTE 440 (1050)
Q Consensus 386 ~~a~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~a~~~la~--~~~~~g~~~~A~~~~~~ 440 (1050)
.++..+++.++|..|...|+.++...+.. ...+..+.. .+...-++++|.+.+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 45668899999999999999999875421 233444444 44567788999999885
No 425
>PRK12798 chemotaxis protein; Reviewed
Probab=51.62 E-value=4.4e+02 Score=30.49 Aligned_cols=270 Identities=12% Similarity=0.106 Sum_probs=169.5
Q ss_pred CCCcHHhhhhhhhhhHHHHHhhhHHHHhHHHHHHHhhcc-CCCcHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001578 338 SSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKS-KSISVDF-----RLSRGIAQVNEGKYASAISIFDQILKED 411 (1050)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~a~~~~~~g~~~~Ai~~~~~al~~~ 411 (1050)
...+++....++..++.+..-.......+.+.+.++... ...+++. ...-+.+|.-.|--.+.++ .++..+
T Consensus 31 ~~~PyelvRSLQ~lQD~Va~Gd~~A~~~Qr~LL~~i~~~l~aa~~~vw~dprNv~Aa~iy~lSGGnP~vlr---~L~~~d 107 (421)
T PRK12798 31 VLEPYKLVRSLQLLQDSVAAGDHSAHEMQRFLLGTIDERLRAADPEVWDDPRNVDAALIYLLSGGNPATLR---KLLARD 107 (421)
T ss_pred CCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCCHHHhCCccchhHHHhhHhcCCCHHHHH---HHHHcC
Confidence 456777777777766665544444444444444333221 1111111 1233445555554444433 344444
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCC---HHH
Q 001578 412 PM-YPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSAGEAWKRRGQA-RAALGESVEAIQDLSKALEFEPNS---ADI 485 (1050)
Q Consensus 412 p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~-~~~~g~~~eA~~~l~kal~~~p~~---~~~ 485 (1050)
+. +.+.-...|...+-.|+-.+|.+.+...-.. .|...-.+..|... .....+...|+..|+.+--..|.. .-+
T Consensus 108 ~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAA 187 (421)
T PRK12798 108 KLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAA 187 (421)
T ss_pred CCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 43 4566677777888889999999888765322 23333344444443 345578999999999999999965 225
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCc-HHHHHHHHHH
Q 001578 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA---YTYLGLALSSIGEYKKAEEAHLKAIQL-DRNF-LEAWGHLTQF 560 (1050)
Q Consensus 486 ~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~---~~~la~~~~~~g~~~eA~~~l~~al~~-~p~~-~~~~~~la~~ 560 (1050)
+..-..+....|+.+++..+..+.+.....++.+ +..+...+...++-.. ...+...+.. +|.. ..+|..++..
T Consensus 188 LRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~d~~~q~~lYL~iAR~ 266 (421)
T PRK12798 188 LRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSFMDPERQRELYLRIARA 266 (421)
T ss_pred HHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 5555566688999999999999998887776543 3334444444443222 2335555554 4433 6788899999
Q ss_pred HHHcCChHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001578 561 YQDLANSEKALECLQQVLYIDK----RFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (1050)
Q Consensus 561 ~~~~g~~~~A~~~l~~al~~~p----~~~~~~~~la~~~~~~g~~~eAi~~l~~a 611 (1050)
-.-.|+.+-|.-.-++++.+.. +...+....+....-..++++|+..+...
T Consensus 267 Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 267 ALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9999999999999999998753 23445555566666677788888877754
No 426
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=51.22 E-value=2.3e+02 Score=27.08 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001578 463 GESVEAIQDLSKALEFEPNSADILHERGIVN 493 (1050)
Q Consensus 463 g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~ 493 (1050)
+.....+.+++.++..++.++..+..+..+|
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly 51 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELY 51 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHH
Confidence 3444444444444444333333333344333
No 427
>PRK09687 putative lyase; Provisional
Probab=51.13 E-value=3.7e+02 Score=29.51 Aligned_cols=222 Identities=12% Similarity=-0.028 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH----HHHHHHHHHHHhhCCCCHHHHHHH
Q 001578 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES----VEAIQDLSKALEFEPNSADILHER 489 (1050)
Q Consensus 414 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----~eA~~~l~kal~~~p~~~~~~~~l 489 (1050)
+..........+...|. +++...+.+++ ...++.....-+.++...|+. .++...+...+..+| ++.+....
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll--~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~-d~~VR~~A 111 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELC--SSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDK-SACVRASA 111 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHH--hCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCC-CHHHHHHH
Confidence 34444444444544443 33333344432 223455555555666666652 455666655544444 34444443
Q ss_pred HHHHHHcCC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc
Q 001578 490 GIVNFKFKD-----FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564 (1050)
Q Consensus 490 g~~~~~~g~-----~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~ 564 (1050)
+..+-..+. ...+...+..++. + .+..+....+..+...++ .+|+..+..++. ++ +..+....+..+-..
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~-D-~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-d~-~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAF-D-KSTNVRFAVAFALSVIND-EAAIPLLINLLK-DP-NGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhh-C-CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc-CC-CHHHHHHHHHHHhcC
Confidence 333333321 1223333333222 2 255666666666666665 578888888876 22 233443333333333
Q ss_pred C-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 001578 565 A-NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643 (1050)
Q Consensus 565 g-~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 643 (1050)
+ ....+...+..++. ..+..+.......+.+.|+ ..|+..+-+.++... .....+.++...|.. +|+..+.
T Consensus 187 ~~~~~~~~~~L~~~L~--D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p~L~ 258 (280)
T PRK09687 187 KYDNPDIREAFVAMLQ--DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLPVLD 258 (280)
T ss_pred CCCCHHHHHHHHHHhc--CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHHHHH
Confidence 2 24577777777763 3355666666666666776 678888888877422 445667777788874 7999999
Q ss_pred HHHHhcCCC
Q 001578 644 AALDLELDS 652 (1050)
Q Consensus 644 ~al~l~p~~ 652 (1050)
++++.+||.
T Consensus 259 ~l~~~~~d~ 267 (280)
T PRK09687 259 TLLYKFDDN 267 (280)
T ss_pred HHHhhCCCh
Confidence 998877743
No 428
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.64 E-value=6.6e+02 Score=32.87 Aligned_cols=30 Identities=23% Similarity=0.136 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578 415 PEALIGRGTARAFQRELEAAISDFTEAIQS 444 (1050)
Q Consensus 415 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (1050)
+...+.+|.+|...|+..+|+.+|.+|..-
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg 949 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSG 949 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhc
Confidence 445666777777777777777777776643
No 429
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=49.96 E-value=2.4e+02 Score=26.94 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=15.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001578 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (1050)
Q Consensus 496 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 528 (1050)
.+.....+.+++.++..++.++..+..+..+|.
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~ 52 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYA 52 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence 344445555555554444444444444444444
No 430
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=48.67 E-value=44 Score=22.28 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhCCCcHHHH
Q 001578 433 AAISDFTEAIQSNPSAGEAW 452 (1050)
Q Consensus 433 ~A~~~~~~al~~~p~~~~~~ 452 (1050)
.|...|++++...|.+...|
T Consensus 5 ~~r~i~e~~l~~~~~~~~~W 24 (33)
T smart00386 5 RARKIYERALEKFPKSVELW 24 (33)
T ss_pred HHHHHHHHHHHHCCCChHHH
Confidence 33333333333333333333
No 431
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=48.28 E-value=33 Score=25.96 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578 385 LSRGIAQVNEGKYASAISIFDQILK 409 (1050)
Q Consensus 385 ~~~a~~~~~~g~~~~Ai~~~~~al~ 409 (1050)
+.+|..|+..|+++.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777777777777777777774
No 432
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.27 E-value=3.5e+02 Score=29.54 Aligned_cols=98 Identities=12% Similarity=-0.039 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHH
Q 001578 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAW 554 (1050)
Q Consensus 484 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~ 554 (1050)
+++.++|..|.+.++.+.+.+.+.+.++..-.. .-.-..+|.+|..+.-.++.++.....++...+- -..-
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK 195 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYK 195 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHH
Confidence 344555555555555555555444444332110 1122233444433333344444444444433221 1112
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhC
Q 001578 555 GHLTQFYQDLANSEKALECLQQVLYID 581 (1050)
Q Consensus 555 ~~la~~~~~~g~~~~A~~~l~~al~~~ 581 (1050)
...|.......++.+|...+-..+...
T Consensus 196 ~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 196 VYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 233444444556666666665555443
No 433
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=47.33 E-value=4.1e+02 Score=28.93 Aligned_cols=169 Identities=19% Similarity=0.237 Sum_probs=86.9
Q ss_pred HHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001578 389 IAQVNEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAF--------QRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (1050)
Q Consensus 389 ~~~~~~g~~-~~Ai~~~~~al~~~p~~~~a~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (1050)
.......+| ..|++.-...+..+|....++...-.+... ..-++.-+.++..+++.+|.+-.+|...-.++
T Consensus 39 ~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~L 118 (328)
T COG5536 39 RAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWML 118 (328)
T ss_pred HHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHH
Confidence 333333333 456666666666666655555444333332 11234455566666777777766666555555
Q ss_pred HHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHH
Q 001578 460 AAL--GESVEAIQDLSKALEFEPNSADILHERGIVN------FKFKDFNAAVEDLSACVKLDKENKSAYTYLG---LALS 528 (1050)
Q Consensus 460 ~~~--g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~------~~~g~~~~A~~~l~~al~~~p~~~~~~~~la---~~~~ 528 (1050)
... ..+..-+...++.++.++.+-.+|...-.+. ....++..-.++-..++..++.+..+|...- ...+
T Consensus 119 e~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~ 198 (328)
T COG5536 119 ELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRF 198 (328)
T ss_pred HhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHH
Confidence 443 4455566666667776666655444333222 2333344445555556666666666665542 1222
Q ss_pred HcCC------HHHHHHHHHHHHHhCcCcHHHHHHH
Q 001578 529 SIGE------YKKAEEAHLKAIQLDRNFLEAWGHL 557 (1050)
Q Consensus 529 ~~g~------~~eA~~~l~~al~~~p~~~~~~~~l 557 (1050)
..|+ +++-+.+...++-.+|++..+|..+
T Consensus 199 ~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~ 233 (328)
T COG5536 199 NRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYL 233 (328)
T ss_pred hhcccchHHHHHHHHHHHHhhhhcCccccchhhHH
Confidence 2332 3333444445555566665555443
No 434
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=47.28 E-value=41 Score=22.45 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhCcCcHHHH
Q 001578 535 KAEEAHLKAIQLDRNFLEAW 554 (1050)
Q Consensus 535 eA~~~l~~al~~~p~~~~~~ 554 (1050)
.|...|++++...|.+...|
T Consensus 5 ~~r~i~e~~l~~~~~~~~~W 24 (33)
T smart00386 5 RARKIYERALEKFPKSVELW 24 (33)
T ss_pred HHHHHHHHHHHHCCCChHHH
Confidence 33333333333333333333
No 435
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=46.69 E-value=1e+02 Score=29.56 Aligned_cols=55 Identities=24% Similarity=0.172 Sum_probs=35.0
Q ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578 594 LLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (1050)
Q Consensus 594 ~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 648 (1050)
++..+|+-++--+.+.........+++.+..+|.+|.+.|+..+|-+.+.+|-+.
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3456666666666666666555566788888888888888888888888887664
No 436
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=46.59 E-value=1.2e+03 Score=34.90 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHH---HHHHHHHcc-CHHHHHHHHHHHHHhcCCCHHHH--HH
Q 001578 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYL---RASCYHAIG-EYREAIKDYDAALDLELDSMEKF--VL 658 (1050)
Q Consensus 586 ~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~-~~~~~~---la~~~~~~g-~~~eA~~~~~~al~l~p~~~~~~--~~ 658 (1050)
.+....|.+....|-++.++..+.+...+..-. .++... -+.||...- ....+++..+. .|...+ ..
T Consensus 2737 ~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~s------TNl~yF~~~q 2810 (3550)
T KOG0889|consen 2737 WAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIES------TNLMYFSDRQ 2810 (3550)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhc------ccHHHHhhHH
Confidence 344555666667777777777777766653221 122221 223333322 22222222221 122211 11
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHHHHhhc
Q 001578 659 QCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRL 701 (1050)
Q Consensus 659 ~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w~~r~ 701 (1050)
.+..+..+|..+.+.++.++|-..|..|..++.+-...|..|+
T Consensus 2811 ~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg 2853 (3550)
T KOG0889|consen 2811 KAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWG 2853 (3550)
T ss_pred HHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHH
Confidence 3445677888889999999999999999999888888887765
No 437
>PF12854 PPR_1: PPR repeat
Probab=44.15 E-value=50 Score=23.18 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Q 001578 619 IECLYLRASCYHAIGEYREAIKDYDA 644 (1050)
Q Consensus 619 ~~~~~~la~~~~~~g~~~eA~~~~~~ 644 (1050)
...|..+-..|.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45556666666666666666666553
No 438
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.67 E-value=1.3e+02 Score=36.02 Aligned_cols=80 Identities=14% Similarity=0.060 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 001578 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (1050)
Q Consensus 518 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 597 (1050)
+....++..+..+|-.++| +++.++. .-.+ .+..+.|+++.|.++..++ ++..-|..||.+...
T Consensus 615 ~~rt~va~Fle~~g~~e~A-------L~~s~D~-d~rF---elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQA-------LELSTDP-DQRF---ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALS 678 (794)
T ss_pred hhhhhHHhHhhhccchHhh-------hhcCCCh-hhhh---hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhh
Confidence 3445556666666655554 4444432 2222 3345678888887765544 455668888888888
Q ss_pred CCCHHHHHHHHHHHHh
Q 001578 598 LGQHKKAIKDLSSGLG 613 (1050)
Q Consensus 598 ~g~~~eAi~~l~~al~ 613 (1050)
.+++..|.++|.++..
T Consensus 679 ~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 679 AGELPLASECFLRARD 694 (794)
T ss_pred cccchhHHHHHHhhcc
Confidence 8888888888887754
No 439
>PRK12798 chemotaxis protein; Reviewed
Probab=41.31 E-value=6.2e+02 Score=29.30 Aligned_cols=226 Identities=14% Similarity=0.042 Sum_probs=145.1
Q ss_pred CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHH
Q 001578 411 DPMYPEALIGRGTARAFQ-RELEAAISDFTEAIQSNPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILH 487 (1050)
Q Consensus 411 ~p~~~~a~~~la~~~~~~-g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~-p~~~~~~~ 487 (1050)
+|.|..+ +.+|... |+... ++.++..++. +.+.-..-|..-+-.|+-.++.+.+...-... |...-.+.
T Consensus 80 dprNv~A----a~iy~lSGGnP~v----lr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~l 151 (421)
T PRK12798 80 DPRNVDA----ALIYLLSGGNPAT----LRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYL 151 (421)
T ss_pred CccchhH----HHhhHhcCCCHHH----HHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHH
Confidence 4555443 3344444 45443 3334444443 45555566777778899999998886653321 22222333
Q ss_pred H-HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH---HHHHHHH
Q 001578 488 E-RGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA---WGHLTQF 560 (1050)
Q Consensus 488 ~-lg~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~---~~~la~~ 560 (1050)
. ..-......+...|+.+|..+--..|... .++..--.+....|+.+++..+-.+-+.....++.+ +-..+..
T Consensus 152 aLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~ 231 (421)
T PRK12798 152 ALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDL 231 (421)
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 3 33344567799999999999999999853 344455556688999999998888888877666433 3334444
Q ss_pred HHHcCChHHHHHHHHHHHhh-CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHccC
Q 001578 561 YQDLANSEKALECLQQVLYI-DK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS----NIECLYLRASCYHAIGE 634 (1050)
Q Consensus 561 ~~~~g~~~~A~~~l~~al~~-~p-~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~----~~~~~~~la~~~~~~g~ 634 (1050)
+....+-..- ..+...+.. +| ....+|..++..-.-.|+.+-|.-.-.+++.+... ...+.++.+.+..-..+
T Consensus 232 ~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~ 310 (421)
T PRK12798 232 VVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDD 310 (421)
T ss_pred HHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCccc
Confidence 4444432222 335555554 44 33568889999999999999999999999988532 24555666666666677
Q ss_pred HHHHHHHHHHH
Q 001578 635 YREAIKDYDAA 645 (1050)
Q Consensus 635 ~~eA~~~~~~a 645 (1050)
+++|.+.+...
T Consensus 311 ~~~al~~L~~I 321 (421)
T PRK12798 311 AESALEELSQI 321 (421)
T ss_pred HHHHHHHHhcC
Confidence 88888777654
No 440
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=41.25 E-value=58 Score=34.41 Aligned_cols=91 Identities=13% Similarity=0.140 Sum_probs=55.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcc-CCcHH------------HHHHHHHHHHhhC-HHHHH-HHHHHHHH-hC-CCChhHHHH
Q 001578 46 LCSLRNWSKAIRILDSLLAQS-YEIQD------------ICNRAFCYSQLEL-HKHVI-RDCDKALQ-LD-PTLLQAYIL 108 (1050)
Q Consensus 46 ~~~~~~~~~Ai~~y~~ai~~~-~~~~~------------~~nra~~~~~~~~-~~~Ai-~~~~~Al~-l~-P~~~~a~~~ 108 (1050)
.|-.|+|+.|+++-.-||+.+ +.|.- .+.-|......|+ ++-+. ..+..... .+ |+-+.|.+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 456699999999999999998 44322 2233333344443 11111 11222111 11 666666666
Q ss_pred HHHHHHH-----------cCCHHHHHHHHHHHHhhccCC
Q 001578 109 KGCAFSA-----------LGRKEEALSVWEKGYEHALHQ 136 (1050)
Q Consensus 109 ~g~~~~~-----------lg~~~~A~~~~~~al~~~~~~ 136 (1050)
+...+.. .++...|+..+++|++++|+.
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 6555544 467889999999998888765
No 441
>PF12854 PPR_1: PPR repeat
Probab=41.14 E-value=59 Score=22.79 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHH
Q 001578 103 LQAYILKGCAFSALGRKEEALSVWEK 128 (1050)
Q Consensus 103 ~~a~~~~g~~~~~lg~~~~A~~~~~~ 128 (1050)
.-.|..+-.+|.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45677777888888888888877764
No 442
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=39.06 E-value=83 Score=29.67 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=24.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCcHHHH
Q 001578 42 ELAKLCSLRNWSKAIRILDSLLAQSYEIQDIC 73 (1050)
Q Consensus 42 ~~~~~~~~~~~~~Ai~~y~~ai~~~~~~~~~~ 73 (1050)
.|-.++..|++++|+.+|-+||...++|..+.
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL 100 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQPAELL 100 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 34456788999999999999999998887643
No 443
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=38.93 E-value=3.3e+02 Score=30.31 Aligned_cols=99 Identities=14% Similarity=0.084 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHH
Q 001578 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IEC 621 (1050)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~---~~~ 621 (1050)
.+++.+.|..|.+.|+-+.|.+.+.+..+..- +-.-....+|..|....-..+.++-.+..++..-+- ...
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 56777777777778888777777776655432 112234455666655444444444444444432221 122
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578 622 LYLRASCYHAIGEYREAIKDYDAALDLE 649 (1050)
Q Consensus 622 ~~~la~~~~~~g~~~eA~~~~~~al~l~ 649 (1050)
....|.......+|.+|-..|-.++...
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 3334445555667777777777666544
No 444
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=38.61 E-value=5.7e+02 Score=29.36 Aligned_cols=54 Identities=13% Similarity=-0.116 Sum_probs=27.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHH--HHHHHcCCHHHHHHHHHH
Q 001578 489 RGIVNFKFKDFNAAVEDLSACVKLDKEN-----KSAYTYLG--LALSSIGEYKKAEEAHLK 542 (1050)
Q Consensus 489 lg~~~~~~g~~~~A~~~l~~al~~~p~~-----~~~~~~la--~~~~~~g~~~eA~~~l~~ 542 (1050)
.+..++..++|..|...|..++...+.. ...+..++ ..+...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3445556666666666666666553321 12222332 333445566666666654
No 445
>PF03887 YfbU: YfbU domain; InterPro: IPR005587 This presumed family is about 160 residues long. In Q9EUM2 from SWISSPROT it is associated with a helix-turn-helix domain. This suggests that this may be a ligand-binding family.; PDB: 1WPB_J.
Probab=38.06 E-value=8.8 Score=38.25 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=18.6
Q ss_pred hcccCCCCcccccceeeeecccchHHHHHHHHHHh
Q 001578 878 NSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVM 912 (1050)
Q Consensus 878 ~~~f~~~~~~~~~q~~~~r~~~~~~~~~~~~k~~~ 912 (1050)
+.||+|||||+ +.|.|-+.....+-
T Consensus 126 ~~~~NSh~pm~----------~kY~RML~~w~~~~ 150 (166)
T PF03887_consen 126 EHDFNSHMPML----------DKYRRMLSVWEECP 150 (166)
T ss_dssp TTTTB-SS--H----------HHHHHHHHHHTTSS
T ss_pred CCCCCccchHH----------HHHHHHHHHHHhCC
Confidence 46899999999 99999998888754
No 446
>PRK05445 hypothetical protein; Validated
Probab=37.80 E-value=16 Score=36.16 Aligned_cols=22 Identities=45% Similarity=0.738 Sum_probs=19.6
Q ss_pred cccCCCCcccccceeeeecccchHHHHHHHHH
Q 001578 879 SGFGSHTPMILGQAKVVRYFPNYARTLDVAKT 910 (1050)
Q Consensus 879 ~~f~~~~~~~~~q~~~~r~~~~~~~~~~~~k~ 910 (1050)
.||+|||||+ ..|.|-+...+.
T Consensus 125 ~~~NSh~pm~----------~kY~RML~~w~~ 146 (164)
T PRK05445 125 HGFNSQTPMW----------DKYQRMLTVWRA 146 (164)
T ss_pred CCCCccchHH----------HHHHHHHHHHHh
Confidence 4899999999 999999999864
No 447
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=36.36 E-value=4.2e+02 Score=27.45 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCC
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA-RAFQRELEAAISDFTEAIQSNP 446 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~-~~~~g~~~~A~~~~~~al~~~p 446 (1050)
...+..+-...+..|+++.|-.+|--++...+-+...+..+|.- +...+.-....++++......|
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 34455556667788999999999999998877777777777654 4444444443455555544433
No 448
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=36.17 E-value=6.1e+02 Score=27.74 Aligned_cols=29 Identities=7% Similarity=-0.035 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578 415 PEALIGRGTARAFQRELEAAISDFTEAIQ 443 (1050)
Q Consensus 415 ~~a~~~la~~~~~~g~~~~A~~~~~~al~ 443 (1050)
.+++.++|..|.+.++.+.+.+.+.+.++
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~ 143 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMR 143 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 45566666666666666666666655554
No 449
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=35.06 E-value=5.8e+02 Score=28.47 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=12.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 001578 523 LGLALSSIGEYKKAEEAHLKAIQL 546 (1050)
Q Consensus 523 la~~~~~~g~~~eA~~~l~~al~~ 546 (1050)
.|.......++.+|-..|..++..
T Consensus 187 ~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 187 QGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHhHHHHHHHHHHHccc
Confidence 344444555555665555555543
No 450
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=34.46 E-value=1.6e+02 Score=25.20 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILK 409 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~ 409 (1050)
+..+...|..+-..|++.+|+.+|+.+++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34456667777777887777777766654
No 451
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=34.16 E-value=1.3e+02 Score=25.80 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=5.1
Q ss_pred HCCCHHHHHHHHH
Q 001578 597 GLGQHKKAIKDLS 609 (1050)
Q Consensus 597 ~~g~~~eAi~~l~ 609 (1050)
..|++.+|+.+|+
T Consensus 18 ~~gr~~eAi~~Y~ 30 (75)
T cd02682 18 KEGNAEDAITNYK 30 (75)
T ss_pred hcCCHHHHHHHHH
Confidence 3344444443333
No 452
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=33.58 E-value=1.2e+02 Score=31.14 Aligned_cols=49 Identities=18% Similarity=0.001 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (1050)
Q Consensus 602 ~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 651 (1050)
+..++..++.+...|+ +.++..++.++...|+.++|.....++..+.|.
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3445555666666664 777888888888888888888888888888883
No 453
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.47 E-value=7.3e+02 Score=27.84 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578 619 IECLYLRASCYHAIGEYREAIKDYDAALDLELD 651 (1050)
Q Consensus 619 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 651 (1050)
+.+-|..+..+.-.|++.++...+..++-+.|+
T Consensus 213 pYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd 245 (449)
T COG3014 213 PYVSYLSGLFYALNGDVNKGLGYLNEAYGISQD 245 (449)
T ss_pred HHHHHHHHHhcccCccHhHHHHHHHHHhccCch
Confidence 444444455555555566666666666655555
No 454
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.53 E-value=1.3e+03 Score=30.44 Aligned_cols=183 Identities=16% Similarity=0.032 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH------HcCC----HHHHHHHHHHHHHhCCCCHHH
Q 001578 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF------KFKD----FNAAVEDLSACVKLDKENKSA 519 (1050)
Q Consensus 450 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~------~~g~----~~~A~~~l~~al~~~p~~~~~ 519 (1050)
...+.+|.+|...|+..+|+.+|.+|..-.... +++..+..-.. ..|+ ...|+.+|.++
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~-~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv---------- 989 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGEG-NALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKV---------- 989 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhccccH-HHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHH----------
Confidence 344566667777777777777777766543321 12222221110 1111 11123333333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHHHHH
Q 001578 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS---KAYHLRG 592 (1050)
Q Consensus 520 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~la 592 (1050)
-+++...+..+.+++...+|++.-|++ +..+..+-.-+..+|.+-+|...+ -.+|+.. ..+..+-
T Consensus 990 ----~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlv 1061 (1480)
T KOG4521|consen 990 ----VRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLV 1061 (1480)
T ss_pred ----HHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHH
Confidence 344556677778888888888765544 334444555566677777776543 3345432 3455566
Q ss_pred HHHHHCCCHHH------------HHH-HHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHH-HHHHHHHhcCC
Q 001578 593 LLLHGLGQHKK------------AIK-DLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIK-DYDAALDLELD 651 (1050)
Q Consensus 593 ~~~~~~g~~~e------------Ai~-~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~-~~~~al~l~p~ 651 (1050)
.++++.|+.+. -.. .++.+-...|-. ...|..|-..+...+++.+|-. .|+.+..+..+
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhccc
Confidence 66666665432 222 333343333322 3445555556677888887665 67777777654
No 455
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.82 E-value=2e+02 Score=35.34 Aligned_cols=180 Identities=16% Similarity=0.095 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHhhCC-CCH
Q 001578 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE------AWKRRGQARAA---LGESVEAIQDLSKALEFEP-NSA 483 (1050)
Q Consensus 414 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~eA~~~l~kal~~~p-~~~ 483 (1050)
.++...++-..|....+|+.-++..+..- .-|+... +.+..+-++-+ -|+-++|+...-.+++... -.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk-~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLK-RIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHH-hCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 35666667777777777777766665543 3343211 11222222222 3667777777766666543 345
Q ss_pred HHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCcCcHHH
Q 001578 484 DILHERGIVNFK---------FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY-KKAEEAHLKAIQLDRNFLEA 553 (1050)
Q Consensus 484 ~~~~~lg~~~~~---------~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~-~eA~~~l~~al~~~p~~~~~ 553 (1050)
+.+...|.+|-. .+..+.|++.|+++.+..|.... =.+++.++...|+. +...+.-. +
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG~~Fens~Elq~-----------I 346 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAGEHFENSLELQQ-----------I 346 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhhhhccchHHHHH-----------H
Confidence 666666666643 23455666666666666664322 23344444443321 11111111 1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 001578 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (1050)
Q Consensus 554 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~ 618 (1050)
-..|+.++-+.|..++-..+++-+. ++ -+ -.-.++|.+|+...+...++.|..
T Consensus 347 gmkLn~LlgrKG~leklq~YWdV~~---------y~-~a--sVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 347 GMKLNSLLGRKGALEKLQEYWDVAT---------YF-EA--SVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHHhhccchHHHHHHHHhHHH---------hh-hh--hhhccCHHHHHHHHHHHhccCCce
Confidence 1223334444444444333332211 11 11 123467777777777777776653
No 456
>PF13041 PPR_2: PPR repeat family
Probab=31.21 E-value=1.8e+02 Score=22.13 Aligned_cols=31 Identities=3% Similarity=0.006 Sum_probs=18.1
Q ss_pred CcHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 001578 68 EIQDICNRAFCYSQLELHKHVIRDCDKALQL 98 (1050)
Q Consensus 68 ~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l 98 (1050)
|...|.-+-.+|.+.|++++|.+.+++..+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3344555555666666666666666666553
No 457
>PF06545 DUF1116: Protein of unknown function (DUF1116); InterPro: IPR009499 This family contains hypothetical bacterial proteins of unknown function.; PDB: 3CLQ_A.
Probab=30.49 E-value=13 Score=38.45 Aligned_cols=47 Identities=26% Similarity=0.543 Sum_probs=30.4
Q ss_pred CCeEEEee---cCCCCccCccccceEEEEEecCCccceeecccCCCchhhh
Q 001578 935 EDFWLATW---CNSTAFEGKQLEGTRITLVKMGESGYDFAIRTPCTPSRWD 982 (1050)
Q Consensus 935 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 982 (1050)
+.||+..+ |.+..+..+-.+|.++.+. |..+|-+|.||+-++|.||=
T Consensus 139 d~FFLnl~MAa~K~~~daa~~i~~stiVta-MarNG~~FGIrvsG~gd~WF 188 (216)
T PF06545_consen 139 DHFFLNLSMAACKAMMDAARGIPGSTIVTA-MARNGVEFGIRVSGLGDRWF 188 (216)
T ss_dssp TTTTHHHHHHHHHHHHHHTSS-TT--BEEE-EEEESSEEEEEETTTTT--E
T ss_pred CceeehHHHHHHHHHHHHhcCCCCCcEEEe-eccCCcEEEEEecCCCCcce
Confidence 55665554 5555556666676666554 77899999999999999994
No 458
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=30.40 E-value=81 Score=26.96 Aligned_cols=16 Identities=38% Similarity=0.518 Sum_probs=9.2
Q ss_pred cCCHHHHHHHHHHHHH
Q 001578 428 QRELEAAISDFTEAIQ 443 (1050)
Q Consensus 428 ~g~~~~A~~~~~~al~ 443 (1050)
.|++++|+.+|..+++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3556666666665554
No 459
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=30.22 E-value=8e+02 Score=27.30 Aligned_cols=192 Identities=12% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001578 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445 (1050)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~----~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (1050)
+.+--.-.|...+.++..|...+..|+|..|-.++-..... ++++..++.+.-..-.-..+++.|++.+.+.-+.-
T Consensus 118 L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~I 197 (432)
T KOG2758|consen 118 LQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYI 197 (432)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred CCc-------------HHHHHHHHHHHHHcCCHHHHHHHHH----HHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHH
Q 001578 446 PSA-------------GEAWKRRGQARAALGESVEAIQDLS----KALEFEPNSADILHERGIVNFKF-KDFNAAVEDLS 507 (1050)
Q Consensus 446 p~~-------------~~~~~~la~~~~~~g~~~eA~~~l~----kal~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~l~ 507 (1050)
... .-.+-.+-..+-.-+--+.-++.|- -.-.+...-+..+..++.+..-. .....+++.+-
T Consensus 198 Ds~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkdlv 277 (432)
T KOG2758|consen 198 DSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKDLV 277 (432)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHHHHHH
Q ss_pred HHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Q 001578 508 ACVKLDKENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY 561 (1050)
Q Consensus 508 ~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~ 561 (1050)
+.++...-.. +.....-.|++-.=+++.|...++++-+.-.++.-....++...
T Consensus 278 kVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~nDfFLva~l~~F~ 332 (432)
T KOG2758|consen 278 KVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVLVNDFFLVALLDEFL 332 (432)
T ss_pred HHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhcchhHHHHHHHHH
No 460
>COG3013 Uncharacterized conserved protein [Function unknown]
Probab=29.85 E-value=25 Score=33.37 Aligned_cols=22 Identities=45% Similarity=0.739 Sum_probs=18.1
Q ss_pred cccCCCCcccccceeeeecccchHHHHHHHHH
Q 001578 879 SGFGSHTPMILGQAKVVRYFPNYARTLDVAKT 910 (1050)
Q Consensus 879 ~~f~~~~~~~~~q~~~~r~~~~~~~~~~~~k~ 910 (1050)
-||+|||||. .-|.|-+++-..
T Consensus 129 h~fnSq~PM~----------dKY~rMl~~W~~ 150 (168)
T COG3013 129 HGFNSQTPMW----------DKYQRMLNVWHA 150 (168)
T ss_pred CCCcccChhH----------HHHHHHHHHHHh
Confidence 5899999998 778888777655
No 461
>PF05745 CRPA: Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA); InterPro: IPR008436 Chlamydia is a genus of bacteria, which causes the most common bacterial sexually transmitted diseases. They are obligate intracellular bacterial pathogens. Members of this genus lack a peptidoglycan layer, but as a substitute, it has been proposed that they have several cysteine rich membrane proteins. This includes the major outer membrane protein (MOMP). These form disulphide bonds to provide rigidity to the cell wall. The alignment of the amino acid sequences of the MOMP from various serovars of Chlamydia show that they have between seven and ten cysteine residues; seven of which are highly conserved []. The MOMP has been the focus of efforts to produce a vaccine for Chlamydia trachomatis []. The 15 kDa cysteine-rich protein in this entry is a multi-pass outer membrane protein. They are associated with the differentiation of reticulate bodies (RBs) into elementary bodies (EBs) []. They immunolocalise to the inclusion membrane, which is the membrane that surrounds the intracellular parasite. These proteins are recognised by CD8+ T cells in both human and mouse infections, suggesting they gain access to the host cytoplasm.; GO: 0019867 outer membrane
Probab=29.62 E-value=23 Score=32.97 Aligned_cols=19 Identities=16% Similarity=0.679 Sum_probs=14.9
Q ss_pred eecccCCCchhhhhhhHHH
Q 001578 970 FAIRTPCTPSRWDEFDAEM 988 (1050)
Q Consensus 970 ~~~~~~~t~~~~~~~~~~~ 988 (1050)
|++.-||||++|+.+..=+
T Consensus 113 ~~m~~~Cs~EKw~lck~~l 131 (150)
T PF05745_consen 113 LCMEESCSPEKWKLCKRWL 131 (150)
T ss_pred HhcCCCCCHHHHHHHHHHH
Confidence 4558899999999887533
No 462
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=29.30 E-value=1.1e+02 Score=37.72 Aligned_cols=95 Identities=21% Similarity=0.257 Sum_probs=48.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001578 388 GIAQVNEGKYASAISIFDQILKEDPM----YPEALIGRGTARAFQ--RELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (1050)
Q Consensus 388 a~~~~~~g~~~~Ai~~~~~al~~~p~----~~~a~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 461 (1050)
+..+++.+++.+|.--|..++..-|. ........+.+++.. |++..++....-++...|....++...+.+|..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence 44455555555554444444444332 123334444444432 455555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhhCCCC
Q 001578 462 LGESVEAIQDLSKALEFEPNS 482 (1050)
Q Consensus 462 ~g~~~eA~~~l~kal~~~p~~ 482 (1050)
.+.++-|++.+.-.....|.+
T Consensus 140 l~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 140 LNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred HHHHHHHHHHHHHHhcCCCCc
Confidence 555555555555444555544
No 463
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=28.90 E-value=1.5e+02 Score=30.29 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001578 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514 (1050)
Q Consensus 468 A~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p 514 (1050)
.++..++.+...| ++.++..++.++...|+.++|.....++..+.|
T Consensus 130 ~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3344444444445 555555556666666666666666666555555
No 464
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.82 E-value=9.5e+02 Score=27.72 Aligned_cols=60 Identities=15% Similarity=0.046 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (1050)
Q Consensus 485 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al 544 (1050)
++..+|..|...|+.+.|++.|.++-...... ...+.++-.+....|+|.....+..+|.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 34445555555555555555555533322211 2233344444444444444444444443
No 465
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=28.73 E-value=6.2e+02 Score=30.79 Aligned_cols=79 Identities=15% Similarity=0.091 Sum_probs=47.3
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 001578 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642 (1050)
Q Consensus 563 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 642 (1050)
+....+.+....+.-+.-....+......+..+..-+..+.|-.+|++.+..+|+ +.++..|.-+.+.|-...|...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 3344444544444444333344445555666666667777777777777766666 55666666666666666666666
Q ss_pred H
Q 001578 643 D 643 (1050)
Q Consensus 643 ~ 643 (1050)
.
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 5
No 466
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.37 E-value=1.3e+03 Score=28.97 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHH--hCCCChhHHHHH---HHHHHHcCCHHHHHHHHHH
Q 001578 84 LHKHVIRDCDKALQ--LDPTLLQAYILK---GCAFSALGRKEEALSVWEK 128 (1050)
Q Consensus 84 ~~~~Ai~~~~~Al~--l~P~~~~a~~~~---g~~~~~lg~~~~A~~~~~~ 128 (1050)
+..+|+.+|-.|-- -.|...+.+.+- |.++....++++-+.+-+.
T Consensus 365 ~L~~aV~~CI~aA~~ef~pe~QK~LL~AAsfGk~~l~~~~~d~~~~v~~~ 414 (829)
T KOG2280|consen 365 DLYKAVDDCIEAACDEFQPEEQKSLLRAASFGKASLRTPNPDEYMRVCRE 414 (829)
T ss_pred HHHHHHHHHHHHhhhccCHHHHHHHHHHHhhcccccccCChHHHHHHHHH
Confidence 67778887777643 336666644432 5556666777766554433
No 467
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=28.02 E-value=8.7e+02 Score=26.98 Aligned_cols=159 Identities=15% Similarity=0.035 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCcCcHHHHHHH
Q 001578 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI----QLDRNFLEAWGHL 557 (1050)
Q Consensus 482 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al----~~~p~~~~~~~~l 557 (1050)
..+....+-..+ ..+++.+.++..++.+..+|--.+.++..+.++.++|. +.+.......+ +.-|.-....+
T Consensus 99 ~ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~L~F-- 174 (301)
T TIGR03362 99 PADRVADYQELL-AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLELKF-- 174 (301)
T ss_pred CHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhhccc--
Confidence 445555555544 66788999999999999988888899999999999994 55544444433 33343211111
Q ss_pred HHHHHHcCCh---HHHHHHHHHHHh-----------hCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---
Q 001578 558 TQFYQDLANS---EKALECLQQVLY-----------IDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--- 618 (1050)
Q Consensus 558 a~~~~~~g~~---~~A~~~l~~al~-----------~~p--~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~--- 618 (1050)
.-|-. ++....+..... ..+ ........-+..+...+..++|+..++..+...+..
T Consensus 175 -----~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~r 249 (301)
T TIGR03362 175 -----SDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRER 249 (301)
T ss_pred -----CCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHH
Confidence 11100 111111111000 001 112223344677788899999999999876543332
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578 619 IECLYLRASCYHAIGEYREAIKDYDAALDLE 649 (1050)
Q Consensus 619 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 649 (1050)
....+.++.++...|.++-|...|+...+.-
T Consensus 250 f~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~ 280 (301)
T TIGR03362 250 FHWRLLLARLLEQAGKAELAQQLYAALDQQI 280 (301)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2355668899999999999999999887653
No 468
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.65 E-value=1.4e+03 Score=29.21 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=36.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578 388 GIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEA 441 (1050)
Q Consensus 388 a~~~~~~g~~~~Ai~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~a 441 (1050)
=..|+..|+|+.|+++.+.. |+. ..++...|..+++.++|..|.++|-+.
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 34678888888888876644 332 246777888888888888888888776
No 469
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=27.49 E-value=20 Score=43.29 Aligned_cols=55 Identities=18% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH--HhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001578 419 IGRGTARAFQRELEAAISDFTEAI--QSNPS-AGEAWKRRGQARAALGESVEAIQDLS 473 (1050)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al--~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~ 473 (1050)
+.-+..+...|++..|...+...- .+.+. ........|.+....|+++.|+..+.
T Consensus 28 L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~ 85 (536)
T PF04348_consen 28 LLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLN 85 (536)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Confidence 333444444445544444444433 11111 12233334444444455555555444
No 470
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=27.32 E-value=85 Score=20.62 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=7.9
Q ss_pred HHHHHHcCChHHHHHHHHH
Q 001578 558 TQFYQDLANSEKALECLQQ 576 (1050)
Q Consensus 558 a~~~~~~g~~~~A~~~l~~ 576 (1050)
-..|.+.|++++|.+.|++
T Consensus 7 i~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 7 ISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHHccchHHHHHHHHHH
Confidence 3334444444444444443
No 471
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=27.10 E-value=7.2e+02 Score=25.74 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHc
Q 001578 601 HKKAIKDLSSGLGIDP--SNIECLYLRASCYHAI 632 (1050)
Q Consensus 601 ~~eAi~~l~~al~~~p--~~~~~~~~la~~~~~~ 632 (1050)
+++.++-+.+.+-.-| ++++.|+..|.|+.-.
T Consensus 158 ~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L~~ 191 (199)
T PF04090_consen 158 YQQLIERIDELVLSPPYMDDGELWFIRGMCHLWI 191 (199)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH
Confidence 4444444444444433 4566666666666543
No 472
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=27.02 E-value=21 Score=43.18 Aligned_cols=101 Identities=20% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhCCC-cHHH
Q 001578 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILK--EDP-MYPEALIGRGTARAFQRELEAAISDFTEA--IQSNPS-AGEA 451 (1050)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~--~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~a--l~~~p~-~~~~ 451 (1050)
+.....++.-+..++..|++..|..++.++-. +.| ......+..|.+....|+++.|+..+... ..+.+. ....
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~ 100 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARY 100 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHH
Confidence 44567778889999999999999999998762 233 23556778899999999999999998741 111111 2345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001578 452 WKRRGQARAALGESVEAIQDLSKALEF 478 (1050)
Q Consensus 452 ~~~la~~~~~~g~~~eA~~~l~kal~~ 478 (1050)
+..++.++...|++-+|...+-.+-.+
T Consensus 101 ~~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 101 HQLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 566788888888887777765544333
No 473
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=26.76 E-value=2.3e+02 Score=25.99 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE 430 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~ 430 (1050)
....+..|...+..||+..|.+.+.++-+..+..+-.+..-|.+...+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 44456667777777777777777777766555545555555555555553
No 474
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=25.97 E-value=5.3e+02 Score=28.23 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Q 001578 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEY 635 (1050)
Q Consensus 601 ~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 635 (1050)
.+.|...+.+|++++|....+...+-.+-...|+.
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 35677777777888877777776666666666654
No 475
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=25.89 E-value=1.2e+02 Score=25.90 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=11.1
Q ss_pred HcCCHHHHHHHHHHHHhh
Q 001578 461 ALGESVEAIQDLSKALEF 478 (1050)
Q Consensus 461 ~~g~~~eA~~~l~kal~~ 478 (1050)
..|++++|+.+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 345666666666666654
No 476
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=25.06 E-value=9.8e+02 Score=26.58 Aligned_cols=147 Identities=15% Similarity=0.053 Sum_probs=91.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCcHHHHHHHHHHHHHcCC---H
Q 001578 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI----QSNPSAGEAWKRRGQARAALGE---S 465 (1050)
Q Consensus 393 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~---~ 465 (1050)
..+++.+.++.+++.+..+|--.+.++..+.++.+.|. +.+.......+ +.-|.-... .+..|- -
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~L-------~F~DGtPFad 182 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLEL-------KFSDGTPFAD 182 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhhc-------ccCCCCCCCC
Confidence 67788999999999999999999999999999999994 55444443332 233322111 111111 0
Q ss_pred HHHHHHHHHHHh-----------hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 001578 466 VEAIQDLSKALE-----------FEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSS 529 (1050)
Q Consensus 466 ~eA~~~l~kal~-----------~~p--~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~ 529 (1050)
++....+..... ..+ .+......-+..+...+..+.|+..++..+...+.. ....+.++.++..
T Consensus 183 ~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~ 262 (301)
T TIGR03362 183 DETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQ 262 (301)
T ss_pred HHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHH
Confidence 111122211100 001 112222344677788889999999998765543332 2445667888999
Q ss_pred cCCHHHHHHHHHHHHHhC
Q 001578 530 IGEYKKAEEAHLKAIQLD 547 (1050)
Q Consensus 530 ~g~~~eA~~~l~~al~~~ 547 (1050)
.|.++-|...|....+..
T Consensus 263 ~g~~~lA~~ll~~L~~~~ 280 (301)
T TIGR03362 263 AGKAELAQQLYAALDQQI 280 (301)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999999999998887653
No 477
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=24.75 E-value=3.6e+02 Score=25.57 Aligned_cols=26 Identities=15% Similarity=-0.013 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578 521 TYLGLALSSIGEYKKAEEAHLKAIQL 546 (1050)
Q Consensus 521 ~~la~~~~~~g~~~eA~~~l~~al~~ 546 (1050)
..+|....+.+++-.++-.|++|+.+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 34455555555555555555555543
No 478
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.53 E-value=6.1e+02 Score=28.17 Aligned_cols=97 Identities=9% Similarity=-0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-------HHHHHHHHHHHHHcCChHHHHHHHHHH--HhhCCCCHHH
Q 001578 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQV--LYIDKRFSKA 587 (1050)
Q Consensus 517 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~a--l~~~p~~~~~ 587 (1050)
......+|.+|...+++..|...+.-.-.-.... ...+..+|.+|.+.++..+|..+..++ +..+..+...
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Q ss_pred HHHH----HHHHHHCCCHHHHHHHHHHHHh
Q 001578 588 YHLR----GLLLHGLGQHKKAIKDLSSGLG 613 (1050)
Q Consensus 588 ~~~l----a~~~~~~g~~~eAi~~l~~al~ 613 (1050)
...+ |+++-..+++-+|...|.+...
T Consensus 183 qie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 183 QIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=24.53 E-value=3.9e+02 Score=21.83 Aligned_cols=58 Identities=12% Similarity=0.003 Sum_probs=35.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 001578 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCW 682 (1050)
Q Consensus 624 ~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 682 (1050)
..+..+...|+|=+|-+.++.+-...+.. ....+.++....-+......|+..-|...
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~-~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGP-ERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CC-HHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcc-hHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34556667777878887777777655544 44555555555555556666777666554
No 480
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=24.46 E-value=3.8e+02 Score=32.52 Aligned_cols=79 Identities=22% Similarity=0.179 Sum_probs=46.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 001578 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472 (1050)
Q Consensus 393 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 472 (1050)
++...+.+....+.-+.-.......++..|..+-..+..+.|-.+|++.+..+|+ +.++..|.-+.+.|-...|...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 3444555555555444434444555556666666666666677777776666666 55556666666666666666655
Q ss_pred H
Q 001578 473 S 473 (1050)
Q Consensus 473 ~ 473 (1050)
.
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 5
No 481
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=24.40 E-value=9.3e+02 Score=26.12 Aligned_cols=246 Identities=13% Similarity=0.063 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHhhhHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001578 347 KLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA 426 (1050)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~ 426 (1050)
........+...-+............+.+....+...+..-+-.++.+-...+|+..+...+......+.+....|.++-
T Consensus 15 ~s~~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~desq~pmvRhEAaealg 94 (289)
T KOG0567|consen 15 KSQPLQNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDESQEPMVRHEAAEALG 94 (289)
T ss_pred ccHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccccchHHHHHHHHHHH
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001578 427 FQRELEAAISDFTEAIQSNPSAGEAW-KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505 (1050)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 505 (1050)
..| ......++.+.. .+|.-.-.- ..+|.-+..-++--.....-......+|.-+.....+..+
T Consensus 95 a~~-~~~~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~l------------- 159 (289)
T KOG0567|consen 95 AIG-DPESLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHEL------------- 159 (289)
T ss_pred hhc-chhhHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHH-------------
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 001578 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585 (1050)
Q Consensus 506 l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 585 (1050)
+..-++++.+....+.+..+.+.-.-++|+..+-..+... .+-.....|.++-+++. ..|+..+.+.+.....++
T Consensus 160 --r~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~--SalfrhEvAfVfGQl~s-~~ai~~L~k~L~d~~E~p 234 (289)
T KOG0567|consen 160 --RAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADD--SALFRHEVAFVFGQLQS-PAAIPSLIKVLLDETEHP 234 (289)
T ss_pred --HHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccc--hHHHHHHHHHHHhhccc-hhhhHHHHHHHHhhhcch
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 001578 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (1050)
Q Consensus 586 ~~~~~la~~~~~~g~~~eAi~~l~~al~ 613 (1050)
.....-+.++...++ +++++.+++.+.
T Consensus 235 MVRhEaAeALGaIa~-e~~~~vL~e~~~ 261 (289)
T KOG0567|consen 235 MVRHEAAEALGAIAD-EDCVEVLKEYLG 261 (289)
T ss_pred HHHHHHHHHHHhhcC-HHHHHHHHHHcC
No 482
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=24.37 E-value=96 Score=32.82 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=8.7
Q ss_pred cCCHHHHHHHHHHHHHh
Q 001578 428 QRELEAAISDFTEAIQS 444 (1050)
Q Consensus 428 ~g~~~~A~~~~~~al~~ 444 (1050)
.|+++.|++....|++.
T Consensus 96 ~Gd~~~AL~ia~yAI~~ 112 (230)
T PHA02537 96 IGDFDGALEIAEYALEH 112 (230)
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 35555555555555544
No 483
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=24.08 E-value=3.5e+02 Score=25.65 Aligned_cols=27 Identities=15% Similarity=0.031 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578 384 RLSRGIAQVNEGKYASAISIFDQILKE 410 (1050)
Q Consensus 384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~ 410 (1050)
+..+|...++.+++-.++-.|++++..
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 456677778888888888888888754
No 484
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=23.51 E-value=6.7e+02 Score=27.44 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChH
Q 001578 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (1050)
Q Consensus 533 ~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 568 (1050)
.+.|...+.+|++++|....++..+-.+-...|..+
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 456777777788888777777777766666666654
No 485
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=22.40 E-value=1.6e+02 Score=19.71 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=9.4
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 001578 557 LTQFYQDLANSEKALECLQQV 577 (1050)
Q Consensus 557 la~~~~~~g~~~~A~~~l~~a 577 (1050)
+-..|.+.|++++|.+.|.+.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 333444444444444444443
No 486
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.63 E-value=4.5e+02 Score=23.87 Aligned_cols=63 Identities=11% Similarity=0.043 Sum_probs=0.0
Q ss_pred hCHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHH
Q 001578 83 ELHKHVIRDCDKALQLD-PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLE 145 (1050)
Q Consensus 83 ~~~~~Ai~~~~~Al~l~-P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~ 145 (1050)
.+..+-.+.++++-.-+ |--+-.|-.+|.+|...|+.+.|+..|+.--.+-|++..-.+.|+.
T Consensus 51 ~Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFLmk 114 (121)
T COG4259 51 AQTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFLMK 114 (121)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHHHH
No 487
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=20.96 E-value=1.7e+02 Score=25.39 Aligned_cols=15 Identities=13% Similarity=0.459 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHHH
Q 001578 429 RELEAAISDFTEAIQ 443 (1050)
Q Consensus 429 g~~~~A~~~~~~al~ 443 (1050)
|+.+.|+.+|++++.
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555443
No 488
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.59 E-value=4.1e+02 Score=30.67 Aligned_cols=48 Identities=19% Similarity=-0.004 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----------CcHHHHHHHHHHHHHcCC
Q 001578 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDR-----------NFLEAWGHLTQFYQDLAN 566 (1050)
Q Consensus 519 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p-----------~~~~~~~~la~~~~~~g~ 566 (1050)
.++..|.+......|++|+.++-.|-+... +.+-....+.+||+.+.+
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLkn 223 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKN 223 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcc
Confidence 456778888888999999988877655432 223333445667776654
No 489
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=20.27 E-value=1.3e+02 Score=25.69 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001578 86 KHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132 (1050)
Q Consensus 86 ~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~ 132 (1050)
.+|+..+.+|++.|-. |+|++|...|..+++.
T Consensus 4 ~~A~~l~~~Ave~d~~---------------~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEKEEE---------------GDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHH---------------hhHHHHHHHHHHHHHH
Confidence 4556666666655543 7888888888888644
No 490
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=20.26 E-value=3.5e+02 Score=26.74 Aligned_cols=63 Identities=13% Similarity=-0.092 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcc------CC--cHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 001578 35 SAITARIELAKLCSLRNWSKAIRILDSLL-AQS------YE--IQDICNRAFCYSQLELHKHVIRDCDKALQ 97 (1050)
Q Consensus 35 ~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai-~~~------~~--~~~~~nra~~~~~~~~~~~Ai~~~~~Al~ 97 (1050)
.........++.+..|+.+.|.+.+.-+- +.. |- ...-.++|..++..|++.+|...+..|++
T Consensus 74 ~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 74 EKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 34445578899999999999999888652 221 10 12256899999999999999999988875
No 491
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.23 E-value=7.2e+02 Score=31.53 Aligned_cols=32 Identities=31% Similarity=0.563 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001578 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDP 412 (1050)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p 412 (1050)
....+..|..+...|++.+|++.|+.++-.-|
T Consensus 991 l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~ 1022 (1202)
T KOG0292|consen 991 LNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIP 1022 (1202)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHHhhee
Confidence 34456778888889999999999999886543
Done!