Query 001578
Match_columns 1050
No_of_seqs 1280 out of 4754
Neff 8.9
Searched_HMMs 29240
Date Tue Mar 26 16:13:14 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001578.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_877-881//hhsearch_pdb/001578hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 324.0 49.7 376 43-662 6-382 (388)
2 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 315.6 48.8 317 378-701 64-380 (388)
3 2gw1_A Mitochondrial precursor 1.0 1 1 312.9 44.7 458 35-658 5-488 (514)
4 2xpi_A Anaphase-promoting comp 1.0 1 1 311.4 46.2 491 35-698 83-588 (597)
5 2xpi_A Anaphase-promoting comp 1.0 1 1 300.4 51.1 445 41-661 122-592 (597)
6 3fp2_A TPR repeat-containing p 1.0 1 1 298.5 44.3 450 29-656 18-499 (537)
7 2gw1_A Mitochondrial precursor 1.0 1 1 290.5 38.7 280 412-699 183-488 (514)
8 3fp2_A TPR repeat-containing p 1.0 1 1 285.5 37.3 441 69-697 25-499 (537)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 272.1 42.0 317 374-697 19-366 (450)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 262.3 42.9 362 40-652 30-414 (450)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=323.97 Aligned_cols=376 Identities=19% Similarity=0.190 Sum_probs=350.5
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99999438999999999999811379-17787899999971278999999999998099875699999999998599999
Q 001578 43 LAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE 121 (1050)
Q Consensus 43 ~~~~~~~g~y~~Ai~~y~~ai~~~~n-~~~~~nrA~~~~~lg~~~~Ai~~~~~AL~ldP~~~~a~~~lG~~y~~lg~~~e 121 (1050)
+..++..|++++|+..|.++++..|+ +..+..++.+++..|++++|+..++++++.+|....+++.+|.+|...|++++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 99998779999999999999984978899999999999986899999999999976197866999999999987799999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 99999999963037938689899999999999842111111000135777654567888898871110027997522223
Q 001578 122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS 201 (1050)
Q Consensus 122 A~~~~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 201 (1050)
|+..|++++++
T Consensus 86 A~~~~~~al~~--------------------------------------------------------------------- 96 (388)
T 1w3b_A 86 AIEHYRHALRL--------------------------------------------------------------------- 96 (388)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHC---------------------------------------------------------------------
T ss_conf 99999999874---------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44632100102689998887787644679987776666544588620000148899999886554566432234788875
Q 001578 202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF 281 (1050)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~~ 281 (1050)
T Consensus 97 -------------------------------------------------------------------------------- 96 (388)
T 1w3b_A 97 -------------------------------------------------------------------------------- 96 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68899987433323357678884444567546734577776441000112235689998077644345336877874259
Q 001578 282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE 361 (1050)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~ 361 (1050)
T Consensus 97 -------------------------------------------------------------------------------- 96 (388)
T 1w3b_A 97 -------------------------------------------------------------------------------- 96 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99817888998511198769999999999999099799999999999959999999999999999907999999999999
Q 001578 362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441 (1050)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 441 (1050)
.|..+..+..+|..+...|++++|+..|+++++.+|+...++..+|.++...|++++|+..|.++
T Consensus 97 ---------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 97 ---------------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp ---------------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf ---------------96539999999999998589999999999999759896899999999999846899999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 99599919999999999999199999999999999619999999999999999849999999999999982799999999
Q 001578 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (1050)
Q Consensus 442 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 521 (1050)
+...|.+..++..+|.++...|++++|+..+++++..+|.+...+..+|.++...|++++|+..+++++...|++..++.
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 87298978999999999998599999999999998559886799999999999857899999999999852968789999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999998399999999999999727583999999999999828959999999999941799999999999999988997
Q 001578 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601 (1050)
Q Consensus 522 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 601 (1050)
.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
T ss_conf 99999998688999999999998649998899999999999869979999999999864944499999999999984899
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999999998812999999999999999990699999999999997437997888999999
Q 001578 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662 (1050)
Q Consensus 602 ~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~ 662 (1050)
++|+..++++++..|++..++..+|.++...|++++|+..|+++++++|++..++..++..
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999999860987399997799999986888999999999986199978999859999
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=315.62 Aligned_cols=317 Identities=22% Similarity=0.255 Sum_probs=305.1
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 87699999999999990997999999999999599999999999999999079999999999999959991999999999
Q 001578 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (1050)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (1050)
|.++..+..+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..|.++++.+|+...++..+|.
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 143 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN 143 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 78669999999999877999999999999987496539999999999998589999999999999759896899999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 99991999999999999996199999999999999998499999999999999827999999999999999839999999
Q 001578 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (1050)
Q Consensus 458 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 537 (1050)
++...|++++|+..+++++...|.+...+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~ 223 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99984689999999999987298978999999999998599999999999998559886799999999999857899999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999997275839999999999998289599999999999417999999999999999889979999999998812999
Q 001578 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (1050)
Q Consensus 538 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~ 617 (1050)
..+.+++...|++..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|++++...|.
T Consensus 224 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 303 (388)
T 1w3b_A 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999985296878999999999998688999999999998649998899999999999869979999999999864944
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99999999999999069999999999999743799788899999999999999993089999999998430299989999
Q 001578 618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYW 697 (1050)
Q Consensus 618 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w 697 (1050)
+..++..+|.++...|++++|+..+++++++.|++.. .++.++..+...+++++|+..|+++.+++|.+.+.|
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~ 376 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA-------AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH-------HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 4999999999999848999999999999860987399-------997799999986888999999999986199978999
Q ss_pred HHHC
Q ss_conf 8413
Q 001578 698 CKRL 701 (1050)
Q Consensus 698 ~~r~ 701 (1050)
....
T Consensus 377 ~~lg 380 (388)
T 1w3b_A 377 SNMG 380 (388)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 8599
No 3
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=312.85 Aligned_cols=458 Identities=18% Similarity=0.181 Sum_probs=369.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 89999999999994389999999999998113791778789999997127899999999999809987569999999999
Q 001578 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS 114 (1050)
Q Consensus 35 ~~~~~r~~~~~~~~~g~y~~Ai~~y~~ai~~~~n~~~~~nrA~~~~~lg~~~~Ai~~~~~AL~ldP~~~~a~~~lG~~y~ 114 (1050)
.+......+..++..|+|++|+..|++++..+|++..+.++|.+++.+|++++|+..++++++++|++..+++.+|.+|.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 57999998789998602789999999998559227899868899998854999999998776069378999998889999
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 85999999999999996303793868989999999999984211111100013577765456788889887111002799
Q 001578 115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK 194 (1050)
Q Consensus 115 ~lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 194 (1050)
.+|++++|+..|++++...+.........+....................
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------------ 134 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDID------------------------------ 134 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------
T ss_conf 87668889999999995598751137899999999999999999999899------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 75222234463210010268999888778764467998777666654458862000014889999988655456643223
Q 001578 195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN 274 (1050)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 274 (1050)
.. ... +......... +.
T Consensus 135 ------------------~~----------~~~-~~~~~~~~~~-~~--------------------------------- 151 (514)
T 2gw1_A 135 ------------------TA----------TAT-PTELSTQPAK-ER--------------------------------- 151 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------HH----------HHH-HHHCCCCHHH-HH---------------------------------
T ss_conf ------------------99----------876-6512677246-78---------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 47888756889998743332335767888444456754673457777644100011223568999807764434533687
Q 001578 275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM 354 (1050)
Q Consensus 275 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~ 354 (1050)
.. ........... ......
T Consensus 152 ----------~~-----------------------------------------------~~~~~~~~~~~----~~~~~~ 170 (514)
T 2gw1_A 152 ----------KD-----------------------------------------------KQENLPSVTSM----ASFFGI 170 (514)
T ss_dssp --------------------------------------------------------------CCCCHHHH----HHHHTT
T ss_pred ----------HH-----------------------------------------------HCCCCCHHHHH----HHHHHH
T ss_conf ----------86-----------------------------------------------34478615899----999862
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----H--C-------CCCHHH
Q ss_conf 787425999817888998511198769999999999999---0997999999999999-----5--9-------999999
Q 001578 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN---EGKYASAISIFDQILK-----E--D-------PMYPEA 417 (1050)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~g~~~~Ai~~~~~al~-----~--~-------p~~~~a 417 (1050)
+..... ...-..|.+...++..|..++. .|++++|+..|++++. . . |..+.+
T Consensus 171 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 171 FKPELT-----------FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp SCCCCC-----------CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred CCHHHH-----------HHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 587888-----------887259958889999899998762332299999999999988665422381001148278999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999990799999999999999599919999999999999199999999999999619999999999999999849
Q 001578 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497 (1050)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 497 (1050)
+..+|.++...|++++|+..+++++...|. ..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 999999999878999999999999863864-8999999999998888999999999986138677899999999999807
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999999999998279999999999999998399999999999999727583999999999999828959999999999
Q 001578 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (1050)
Q Consensus 498 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 577 (1050)
++++|+..+++++...|.+..++..+|.++...|++++|+..+.+++...|.+..++..+|.++...|++++|+..++++
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 79999999999987385028999999999998689999999999999875467789999999998788999999999999
Q ss_pred HHHCCCCHH------HHHHHHHHHHH---CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 941799999------99999999998---899799999999988129999999999999999906999999999999974
Q 001578 578 LYIDKRFSK------AYHLRGLLLHG---LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648 (1050)
Q Consensus 578 l~~~p~~~~------~~~~la~~~~~---~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 648 (1050)
+...|.+.. ++..+|.++.. .|++++|+..+++++...|++..++..+|.++...|++++|...|++++++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 97612332178999999999999866332588899999999998758555899999999999825799999999999876
Q ss_pred CCCCHHHHHH
Q ss_conf 3799788899
Q 001578 649 ELDSMEKFVL 658 (1050)
Q Consensus 649 ~p~~~~~~~~ 658 (1050)
+|++++.+..
T Consensus 479 ~~~~~~~~~~ 488 (514)
T 2gw1_A 479 ARTMEEKLQA 488 (514)
T ss_dssp CSSHHHHHHH
T ss_pred CCCCHHHHHH
T ss_conf 6146889999
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=311.38 Aligned_cols=491 Identities=12% Similarity=0.014 Sum_probs=298.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 89999999999994389999999999998113791778789999997127899999999999809987569999999999
Q 001578 35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS 114 (1050)
Q Consensus 35 ~~~~~r~~~~~~~~~g~y~~Ai~~y~~ai~~~~n~~~~~nrA~~~~~lg~~~~Ai~~~~~AL~ldP~~~~a~~~lG~~y~ 114 (1050)
........+..++..|++++|+..|++++...|+...+..++.+|...|++++|+..+++++.. |....++..+|.+|.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHHHH
T ss_conf 9999999999998745834799999999960899357999999999747699999999987335-456508999999999
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH------HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 859999999999999963037938689899999------99999984211111100013577765456788889887111
Q 001578 115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELE------ELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSET 188 (1050)
Q Consensus 115 ~lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~------~~~~~a~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 188 (1050)
..|++++|+..|++. .+..... .....+. +....+...+...+..
T Consensus 162 ~~g~~~~A~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------- 212 (597)
T 2xpi_A 162 KLYDWQGALNLLGET---NPFRKDE-KNANKLLMQDGGIKLEASMCYLRGQVYTN------------------------- 212 (597)
T ss_dssp HTTCHHHHHHHHCSS---CTTC-----------CCCSSCCHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHCC---CCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------------------------
T ss_conf 886699999998424---8863223-23433432112351258999998899998-------------------------
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00279975222234463210010268999888778764467998777666654458862000014889999988655456
Q 001578 189 SENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASR 268 (1050)
Q Consensus 189 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (1050)
T Consensus 213 -------------------------------------------------------------------------------- 212 (597)
T 2xpi_A 213 -------------------------------------------------------------------------------- 212 (597)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHH
Q ss_conf 64322347888756889998743332335767888444456754673457777644100011223568-99980776443
Q 001578 269 DASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDN-KSSDSTESRSK 347 (1050)
Q Consensus 269 ~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~-k~~~~~~~l~~ 347 (1050)
. +..+.+...+...+... ........+..
T Consensus 213 ---------------------------------------~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 242 (597)
T 2xpi_A 213 ---------------------------------------L-----------SNFDRAKECYKEALMVDAKCYEAFDQLVS 242 (597)
T ss_dssp ---------------------------------------T-----------TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------------------------C-----------CCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf ---------------------------------------3-----------99899999999999729325699999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 4533687787425999817888998511198-769999999999999099799999999999959999999999999999
Q 001578 348 LSFKWDMLKETSNEAKRNKKFCVTRISKSKS-ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA 426 (1050)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~ 426 (1050)
......... . .....+.+.......+ .....+..++..+...|++++|+..|+++++. |.+..++..+|.++.
T Consensus 243 ~~~~~~~~~--~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 243 NHLLTADEE--W---DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLF 316 (597)
T ss_dssp TTCSCHHHH--H---HHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHH
T ss_pred HHCCCCHHH--H---HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
T ss_conf 503461567--8---9998657742344308899999999999980731399999999876438-830999999999999
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 90799999999999999599919999999999999199999999999999619999999999999999849999999999
Q 001578 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506 (1050)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 506 (1050)
..|++++|+..|++++...|.+..++..++.++...|++++|+..+++++...|.+...+..+|.+|...|++++|+..|
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 84689999999999997295537999999999998277779999999998518354799999999999835699999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99998279999999999999998399999999999999727583999999999999828959999999999941799999
Q 001578 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK 586 (1050)
Q Consensus 507 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 586 (1050)
+++++..|.+..++..++.++...|++++|+..+++++...|.+..++..++.++...|++++|+..|++++...|.++.
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 476 (597)
T 2xpi_A 397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL 476 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 99987297778999999999997577799999999999868134389999999999857999999999999984888767
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHC------CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 9999999999889979999999998812------9999-99999999999990699999999999997437997888999
Q 001578 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGI------DPSN-IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659 (1050)
Q Consensus 587 ~~~~la~~~~~~g~~~eAl~~l~~al~~------~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~ 659 (1050)
++..+|.++...|++++|+..|++++.. +|+. ..++..+|.++...|++++|+..+++++++.|++..
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----- 551 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN----- 551 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH-----
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH-----
T ss_conf 999999999981899999999999998532345453549999999999999804799999999999973899738-----
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 999999999999930899999999984302999899998
Q 001578 660 CLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWC 698 (1050)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w~ 698 (1050)
.++.++.++...|++++|...|+++.+++|++...|.
T Consensus 552 --~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 588 (597)
T 2xpi_A 552 --VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASD 588 (597)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred --HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf --9999999999817899999999999720888748999
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=300.37 Aligned_cols=445 Identities=14% Similarity=0.109 Sum_probs=361.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC------------------
Q ss_conf 99999994389999999999998113791778789999997127899999999999809987------------------
Q 001578 41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTL------------------ 102 (1050)
Q Consensus 41 ~~~~~~~~~g~y~~Ai~~y~~ai~~~~n~~~~~nrA~~~~~lg~~~~Ai~~~~~AL~ldP~~------------------ 102 (1050)
..+..++..|++++|+..|++++...+++..+..++.+|.+.|++++|+..+++ ..|..
T Consensus 122 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 198 (597)
T 2xpi_A 122 WLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKL 198 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 999999974769999999998733545650899999999988669999999842---48863223234334321123512
Q ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf -5699999999998599999999999999630379386898999999999998421111110001357776545678888
Q 001578 103 -LQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNA 181 (1050)
Q Consensus 103 -~~a~~~lG~~y~~lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 181 (1050)
..+++.+|.+|...|++++|+..|+++++..|........+..+........... ...
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~----~~~----------------- 257 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDL----VLK----------------- 257 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHH----HHH-----------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHH----HHH-----------------
T ss_conf 58999998899998399899999999999729325699999998503461567899----986-----------------
Q ss_pred CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98871110027997522223446321001026899988877876446799877766665445886200001488999998
Q 001578 182 NDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGS 261 (1050)
Q Consensus 182 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (1050)
. ......
T Consensus 258 --------------------------------------------------l---~~~~~~-------------------- 264 (597)
T 2xpi_A 258 --------------------------------------------------L---NYSTYS-------------------- 264 (597)
T ss_dssp --------------------------------------------------S---CTHHHH--------------------
T ss_pred --------------------------------------------------C---CCCCCC--------------------
T ss_conf --------------------------------------------------5---774234--------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86554566432234788875688999874333233576788844445675467345777764410001122356899980
Q 001578 262 KSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDS 341 (1050)
Q Consensus 262 ~~~~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~ 341 (1050)
........ ..
T Consensus 265 -------------------------------------------------------------~~~~~~~~---------~~ 274 (597)
T 2xpi_A 265 -------------------------------------------------------------KEDAAFLR---------SL 274 (597)
T ss_dssp -------------------------------------------------------------GGGHHHHH---------HH
T ss_pred -------------------------------------------------------------CCHHHHHH---------HH
T ss_conf -------------------------------------------------------------43088999---------99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 77644345336877874259998178889985111987699999999999990997999999999999599999999999
Q 001578 342 TESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR 421 (1050)
Q Consensus 342 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~l 421 (1050)
+..+...+...+....... .+.+.... +.+...+..+|..+...|++++|+..|++++...|.+..++..+
T Consensus 275 ~~~~~~~~~~~g~~~~A~~--------~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 345 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAED--------YLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH 345 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHH--------HHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHH
T ss_pred HHHHHHHHCCCCHHHHHHH--------HHHHHHCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 9999999807313999999--------99876438-83099999999999984689999999999997295537999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99999907999999999999995999199999999999991999999999999996199999999999999998499999
Q 001578 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501 (1050)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~ 501 (1050)
+.++...|++++|+..+.+++...|.+..++..+|.+|...|++++|+..|++++...|.+...+..++.++...|++++
T Consensus 346 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 346 LASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 99999827777999999999851835479999999999983569999999999987297778999999999997577799
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Q ss_conf 9999999998279999999999999998399999999999999727583999999999999828959999999999941-
Q 001578 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI- 580 (1050)
Q Consensus 502 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 580 (1050)
|+..+++++...|.+..++..++.++...|++++|+..++++++..|.++.++..++.++...|++++|+..|++++..
T Consensus 426 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 99999999986813438999999999985799999999999998488876799999999998189999999999999853
Q ss_pred -----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf -----7999-9999999999998899799999999988129999999999999999906999999999999974379978
Q 001578 581 -----DKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654 (1050)
Q Consensus 581 -----~p~~-~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 654 (1050)
.|.. ..++..+|.++...|++++|+..++++++..|++..++..+|.+|...|++++|...|+++++++|+++.
T Consensus 506 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 23454535499999999999998047999999999999738997389999999999817899999999999720888748
Q ss_pred HHHHHHH
Q ss_conf 8899999
Q 001578 655 KFVLQCL 661 (1050)
Q Consensus 655 ~~~~~~~ 661 (1050)
.+..++.
T Consensus 586 ~~~~l~~ 592 (597)
T 2xpi_A 586 ASDLLKR 592 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=298.48 Aligned_cols=450 Identities=16% Similarity=0.130 Sum_probs=350.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 66788889999999999994389999999999998113-79177878999999712789999999999980998756999
Q 001578 29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107 (1050)
Q Consensus 29 ~~~~~~~~~~~r~~~~~~~~~g~y~~Ai~~y~~ai~~~-~n~~~~~nrA~~~~~lg~~~~Ai~~~~~AL~ldP~~~~a~~ 107 (1050)
.+.....+......+..++..|+|++|+.+|++++..+ .++..+.++|.+|+.+|++++|+..++++++++|++..+++
T Consensus 18 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 97 (537)
T 3fp2_A 18 PSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALL 97 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 51407889999999999998642999999999998638998489999999999868999999999999860986289999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 99999998599999999999999630379386898999999999998421111110001357776545678888988711
Q 001578 108 LKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSE 187 (1050)
Q Consensus 108 ~lG~~y~~lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 187 (1050)
.+|.++..+|++++|+..|+ ++.+.++.....-..+........+...+ ......
T Consensus 98 ~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~l~~------------------- 152 (537)
T 3fp2_A 98 RRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVL-----NENLSK------------------- 152 (537)
T ss_dssp HHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHH-----HHHCC--------------------
T ss_pred HHHHHHHHCCCHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHH-------------------
T ss_conf 99999998389999999999-98648787858899999877898899999-----999974-------------------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10027997522223446321001026899988877876446799877766665445886200001488999998865545
Q 001578 188 TSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHAS 267 (1050)
Q Consensus 188 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (1050)
.+..... ..+....+..+.
T Consensus 153 -----------------------------~~~~~~~---~~~~~~~~~~~~----------------------------- 171 (537)
T 3fp2_A 153 -----------------------------DEGRGSQ---VLPSNTSLASFF----------------------------- 171 (537)
T ss_dssp -----------------------------------C---CCCCHHHHHHHH-----------------------------
T ss_pred -----------------------------CCCCCCC---CCCHHHHHHHHH-----------------------------
T ss_conf -----------------------------7454543---450675799999-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 66432234788875688999874333233576788844445675467345777764410001122356899980776443
Q 001578 268 RDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSK 347 (1050)
Q Consensus 268 ~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~ 347 (1050)
T Consensus 172 -------------------------------------------------------------------------------- 171 (537)
T 3fp2_A 172 -------------------------------------------------------------------------------- 171 (537)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH--------HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---
Q ss_conf 45336877874259998178889985111987699999--------9999999909979999999999995999999---
Q 001578 348 LSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRL--------SRGIAQVNEGKYASAISIFDQILKEDPMYPE--- 416 (1050)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~--- 416 (1050)
. ......... .+.......+....... ..+......|++++|+..++++++.+|.++.
T Consensus 172 -----~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~ 240 (537)
T 3fp2_A 172 -----G----IFDSHLEVS--SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE 240 (537)
T ss_dssp -----H----TSCHHHHHH--TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHH
T ss_pred -----H----HCCHHHHHH--HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf -----7----447499999--87632564617899999998788764020688887999999999999987877404459
Q ss_pred ----HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf ----9999999999907999999999999995999199999999999991999999999999996199999999999999
Q 001578 417 ----ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (1050)
Q Consensus 417 ----a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 492 (1050)
++..+|.++...|++++|+..+.+++...|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.+
T Consensus 241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 319 (537)
T 3fp2_A 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999999999987545578999999999866987-46999999999980379999999999754599987999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99849999999999999982799999999999999983999999999999997275839999999999998289599999
Q 001578 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572 (1050)
Q Consensus 493 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 572 (1050)
+...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 98668999999999999985999779999999999984779999999999987399985999999999988378899999
Q ss_pred HHHHHHHHCCCCH------HHHHHHHHHHHHC----------CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 9999994179999------9999999999988----------99799999999988129999999999999999906999
Q 001578 573 CLQQVLYIDKRFS------KAYHLRGLLLHGL----------GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYR 636 (1050)
Q Consensus 573 ~~~~al~~~p~~~------~~~~~la~~~~~~----------g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 636 (1050)
.+++++...|... ..+..+|.++... |++++|+..|++++..+|++..++..+|.++...|+++
T Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp HHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHH
T ss_conf 99999870976244688899999889999997640100224757999999999999749997899999999999851499
Q ss_pred HHHHHHHHHHHHCCCCHHHH
Q ss_conf 99999999997437997888
Q 001578 637 EAIKDYDAALDLELDSMEKF 656 (1050)
Q Consensus 637 eA~~~~~~al~l~p~~~~~~ 656 (1050)
+|+..|++++++.|+..+..
T Consensus 480 ~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 480 EAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHH
T ss_conf 99999999998689938888
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=290.47 Aligned_cols=280 Identities=16% Similarity=0.137 Sum_probs=263.1
Q ss_pred CCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----H--C-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999999999999999---0799999999999999-----5--9-------99199999999999991999999999999
Q 001578 412 PMYPEALIGRGTARAF---QRELEAAISDFTEAIQ-----S--N-------PSAGEAWKRRGQARAALGESVEAIQDLSK 474 (1050)
Q Consensus 412 p~~~~a~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 474 (1050)
|.+..++..+|.+++. .|++++|+..+++++. . . |....++..+|.++...|++++|+..+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 262 (514)
T 2gw1_A 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK 262 (514)
T ss_dssp SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 95888999989999876233229999999999998866542238100114827899999999999987899999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99619999999999999999849999999999999982799999999999999983999999999999997275839999
Q 001578 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554 (1050)
Q Consensus 475 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~ 554 (1050)
++...|. ..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++
T Consensus 263 ~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 341 (514)
T 2gw1_A 263 AIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY 341 (514)
T ss_dssp HHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHH
T ss_pred HHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 9863864-899999999999888899999999998613867789999999999980779999999999987385028999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH------HHHHHHHH
Q ss_conf 999999998289599999999999417999999999999999889979999999998812999999------99999999
Q 001578 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE------CLYLRASC 628 (1050)
Q Consensus 555 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~------~~~~la~~ 628 (1050)
..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+.. ++..+|.+
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999868999999999999987546778999999999878899999999999997612332178999999999999
Q ss_pred HHH---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 999---06999999999999974379978889999999999999999308999999999843029998999984
Q 001578 629 YHA---IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCK 699 (1050)
Q Consensus 629 ~~~---~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w~~ 699 (1050)
+.. .|++++|+..+++++.+.|++.. .++.+|.++...+++++|...|+++.+++|+..+.|..
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 488 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPRSEQ-------AKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 86633258889999999999875855589-------99999999998257999999999998766146889999
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=285.46 Aligned_cols=441 Identities=13% Similarity=0.053 Sum_probs=339.6
Q ss_pred CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 17787899999971278999999999998099875699999999998599999999999999630379386898999999
Q 001578 69 IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEE 148 (1050)
Q Consensus 69 ~~~~~nrA~~~~~lg~~~~Ai~~~~~AL~ldP~~~~a~~~lG~~y~~lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~~ 148 (1050)
...+.++|.++++.|++++|+..++++++++|++..+++.+|.+|..+|++++|+..|++++++.|..+..+..+..+.-
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999999999986429999999999986389984899999999998689999999999998609862899999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999842111111000135777654567888898871110027997522223446321001026899988877876446
Q 001578 149 LLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEA 228 (1050)
Q Consensus 149 ~~~~a~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (1050)
........+... ..+ ...
T Consensus 105 ~~g~~~~A~~~~--~~~------------------------------------------------------------~~~ 122 (537)
T 3fp2_A 105 SLGNFTDAMFDL--SVL------------------------------------------------------------SLN 122 (537)
T ss_dssp HHTCHHHHHHHH--HHH------------------------------------------------------------C--
T ss_pred HCCCHHHHHHHH--HHH------------------------------------------------------------HCC
T ss_conf 838999999999--998------------------------------------------------------------648
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79987776666544588620000148899999886554566432234788875688999874333233576788844445
Q 001578 229 KGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVH 308 (1050)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (1050)
+. .
T Consensus 123 ~~----------~------------------------------------------------------------------- 125 (537)
T 3fp2_A 123 GD----------F------------------------------------------------------------------- 125 (537)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CC----------C-------------------------------------------------------------------
T ss_conf 78----------7-------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHH
Q ss_conf 67546734577776441000112235689998077644345336877874259998178889985111987699---999
Q 001578 309 DKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVD---FRL 385 (1050)
Q Consensus 309 ~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 385 (1050)
... . +......... ....-.+...+...|.... ...
T Consensus 126 --------------------~~~------~---------~~~~~~~~~~------~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 126 --------------------DGA------S---------IEPMLERNLN------KQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp -----------------------------------------CHHHHHHH------HHHHHHHHHHCC-------CCCCCH
T ss_pred --------------------CHH------H---------HHHHHHHHHH------HHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf --------------------858------8---------9999987789------8899999999974745454345067
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH--------HHHCCCHHHHHHHHHHHHHHCCCCHH-------
Q ss_conf 999999990997999999999999599999999999999--------99907999999999999995999199-------
Q 001578 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA--------RAFQRELEAAISDFTEAIQSNPSAGE------- 450 (1050)
Q Consensus 386 ~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~--------~~~~g~~~~A~~~~~~al~~~p~~~~------- 450 (1050)
.....++...+...++..+.+.....+........++.. ....+++++|+..++++++..|.+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 244 (537)
T 3fp2_A 165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL 244 (537)
T ss_dssp HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 57999997447499999876325646178999999987887640206888879999999999999878774044599999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999999199999999999999619999999999999999849999999999999982799999999999999983
Q 001578 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530 (1050)
Q Consensus 451 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 530 (1050)
++..+|.++...|++++|+..+++++...|. ...+..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 9999999987545578999999999866987-469999999999803799999999997545999879999999999866
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999999999727583999999999999828959999999999941799999999999999988997999999999
Q 001578 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (1050)
Q Consensus 531 g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~ 610 (1050)
|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++
T Consensus 324 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 89999999999999859997799999999999847799999999999873999859999999999883788999999999
Q ss_pred HHHCCCCCH------HHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 881299999------9999999999990----------699999999999997437997888999999999999999930
Q 001578 611 GLGIDPSNI------ECLYLRASCYHAI----------GEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTAS 674 (1050)
Q Consensus 611 al~~~p~~~------~~~~~la~~~~~~----------g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1050)
++...|.+. ..++.+|.++... |++++|+..|+++++.+|++.. .++.+|.++...+
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-------~~~~l~~~~~~~g 476 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ-------AKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHHC
T ss_conf 987097624468889999988999999764010022475799999999999974999789-------9999999999851
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 89999999998430299989999
Q 001578 675 KINSEFCWFDIDGDIDPLFKEYW 697 (1050)
Q Consensus 675 ~~~~A~~~l~~a~~l~p~~~e~w 697 (1050)
++++|+..|+++.+++|...+..
T Consensus 477 ~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 477 KIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp CHHHHHHHHHHHHHHC--CHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 49999999999998689938888
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=272.07 Aligned_cols=317 Identities=20% Similarity=0.200 Sum_probs=184.1
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 11198769999999999999099799999999999959999999999999999907999999999999995999199999
Q 001578 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453 (1050)
Q Consensus 374 ~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 453 (1050)
...+|.++..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|.+..++.
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 66537899999999999998799999999999999849716899999999999879979999999999844987489999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHH------------HHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 999999991999999999999996199999---999999------------99999849999999999999982799999
Q 001578 454 RRGQARAALGESVEAIQDLSKALEFEPNSA---DILHER------------GIVNFKFKDFNAAVEDLSACVKLDKENKS 518 (1050)
Q Consensus 454 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 518 (1050)
.+|.++...|++++|+..+++++...|.+. ..+..+ |.++...|++++|+..+++++...|.+..
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 178 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 99999998699999999999997249997016889999999999999999999999868999999999999986889769
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH-------
Q ss_conf 9999999999839999999999999972758399999999999982895999999999994179999999999-------
Q 001578 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR------- 591 (1050)
Q Consensus 519 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------- 591 (1050)
++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|++...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999987799999999999999868898799999999999759999999999999875998089999999999999
Q ss_pred -----HHHHHHCCCHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf -----9999988997999999999881299999----9999999999990699999999999997437997888999999
Q 001578 592 -----GLLLHGLGQHKKAIKDLSSGLGIDPSNI----ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA 662 (1050)
Q Consensus 592 -----a~~~~~~g~~~eAl~~l~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~ 662 (1050)
|.++...|++++|+..|++++...|.++ ..+..+|.++...|++++|+..+++++.+.|++.. .
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~-------~ 331 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVN-------A 331 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH-------H
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-------H
T ss_conf 999999999871799999999999985087336899999999999999878899999999999884845489-------9
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99999999993089999999998430299989999
Q 001578 663 FYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYW 697 (1050)
Q Consensus 663 ~~~~~~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w 697 (1050)
++.+|.++...+++++|+..|+++++++|+....|
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 366 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR 366 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99999999870379999999999988593529999
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=262.30 Aligned_cols=362 Identities=17% Similarity=0.160 Sum_probs=215.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 999999994389999999999998113-7917787899999971278999999999998099875699999999998599
Q 001578 40 RIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR 118 (1050)
Q Consensus 40 r~~~~~~~~~g~y~~Ai~~y~~ai~~~-~n~~~~~nrA~~~~~lg~~~~Ai~~~~~AL~ldP~~~~a~~~lG~~y~~lg~ 118 (1050)
...+..++..|+|++|+.+|++++... .++..+.++|.++..+|++++|+..++++++++|+...+++.+|.+|..+|+
T Consensus 30 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 109 (450)
T 2y4t_A 30 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 109 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999879999999999999984971689999999999987997999999999984498748999999999998699
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 99999999999963037938689899999999999842111111000135777654567888898871110027997522
Q 001578 119 KEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDIC 198 (1050)
Q Consensus 119 ~~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 198 (1050)
+++|+..|+++++..|..+... .+...+
T Consensus 110 ~~~A~~~~~~~~~~~~~~~~~~-----------~~~~~l----------------------------------------- 137 (450)
T 2y4t_A 110 LDEAEDDFKKVLKSNPSENEEK-----------EAQSQL----------------------------------------- 137 (450)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHH-----------HHHHHH-----------------------------------------
T ss_pred HHHHHHHHHHHHHCCCCCHHHH-----------HHHHHH-----------------------------------------
T ss_conf 9999999999972499970168-----------899999-----------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22344632100102689998887787644679987776666544588620000148899999886554566432234788
Q 001578 199 DSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSS 278 (1050)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~ 278 (1050)
T Consensus 138 -------------------------------------------------------------------------------- 137 (450)
T 2y4t_A 138 -------------------------------------------------------------------------------- 137 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 87568899987433323357678884444567546734577776441000112235689998077644345336877874
Q 001578 279 DDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKET 358 (1050)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~ 358 (1050)
T Consensus 138 -------------------------------------------------------------------------------- 137 (450)
T 2y4t_A 138 -------------------------------------------------------------------------------- 137 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 25999817888998511198769999999999999099799999999999959999999999999999907999999999
Q 001578 359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF 438 (1050)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~ 438 (1050)
.. . .....++.+|..+...|++++|+..|++++...|.+..++..+|.++...|++++|+..|
T Consensus 138 ~~--------~---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (450)
T 2y4t_A 138 IK--------S---------DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 200 (450)
T ss_dssp HH--------H---------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHH
T ss_pred HH--------H---------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99--------9---------999999999999998689999999999999868897699999999998779999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99999599919999999999999199999999999999619999999999999999849999999999999982799999
Q 001578 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518 (1050)
Q Consensus 439 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 518 (1050)
++++..+|.+..++..+|.++...|++++|+..+++++...|++...+..++.+.. ..
T Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~----------------------~~ 258 (450)
T 2y4t_A 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK----------------------LN 258 (450)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----------------------HH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------------HH
T ss_conf 99998688987999999999997599999999999998759980899999999999----------------------99
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 999999999983999999999999997275839----9999999999982895999999999994179999999999999
Q 001578 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594 (1050)
Q Consensus 519 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 594 (1050)
....+|.++...|++++|+..+++++...|.++ ..+..+|.++...|++++|+..+++++...|.+..++..+|.+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999987179999999999998508733689999999999999987889999999999988484548999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH------------HHHCC-----CHHHHHHHHHH-HHHHCCCC
Q ss_conf 9988997999999999881299999999999999------------99906-----99999999999-99743799
Q 001578 595 LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC------------YHAIG-----EYREAIKDYDA-ALDLELDS 652 (1050)
Q Consensus 595 ~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~------------~~~~g-----~~~eA~~~~~~-al~l~p~~ 652 (1050)
+...|++++|+..++++++++|++..++..++.+ |..+| ..+++.+.|++ ++...|+.
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 9870379999999999988593529999999999998643350569998189866898999999999999759897
Done!