BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001579
         (1050 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WYT|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Apo Form
 pdb|1WYT|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Apo Form
 pdb|1WYU|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Holo Form
 pdb|1WYU|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Holo Form
 pdb|1WYU|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Holo Form
 pdb|1WYU|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Holo Form
 pdb|1WYV|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Inhibitor-Bound Form
 pdb|1WYV|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Inhibitor-Bound Form
 pdb|1WYV|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Inhibitor-Bound Form
 pdb|1WYV|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Inhibitor-Bound Form
          Length = 474

 Score =  252 bits (643), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 157/430 (36%), Positives = 245/430 (56%), Gaps = 27/430 (6%)

Query: 543 EVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLN 602
           + E  IP    RE P     V      E  L+R+   L  +++ +  +  PLGSCTMK N
Sbjct: 25  KAEDLIPKEHLREVPPRLPEV-----DELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYN 79

Query: 603 ATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEY 662
                       FA++HP+     AQG   +   LGE+L  +TG D+ +L+P AGA GE 
Sbjct: 80  PKLHEEAARL--FADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGEL 137

Query: 663 AGLMVIRAYHKARGD-HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELR 721
            G+++IRAYH+ RG+   R V ++P SAHG+NPATA+M G ++  + +  +G +++E L+
Sbjct: 138 TGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALK 197

Query: 722 KAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781
           +    +   ++ LM+T P+T G++E  I EI ++  + G Q+Y DGAN+NA +G   PG 
Sbjct: 198 RELGPH---VAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGD 254

Query: 782 IGADVCHLNLHKTFCIXXXXXXXXXXXXXVKKHLAPFLPSHPVVSTG--GIPAP-EKSQP 838
           +G DV HLNLHKTF +             VK HLAP+LP  P+V  G  G     ++ + 
Sbjct: 255 MGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPV-PLVERGEEGFYLDFDRPKS 313

Query: 839 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRL-EKHYPILFRGV 897
           +G + +  +G+ L L  ++ YI  +G +GL +A+ +A+LNA Y+ + L EK Y + +   
Sbjct: 314 IGRVRSF-YGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPY--- 369

Query: 898 NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP--VPGTLMIEPTESESK 955
           +G   HEF+      +   G    D+AK L++ GFH PT+ +P  V   LM+EPTE+E+K
Sbjct: 370 DGPSMHEFVA-----QPPEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAK 424

Query: 956 EELDRYCDAL 965
           E L+ + +A+
Sbjct: 425 ETLEAFAEAM 434


>pdb|1WYT|A Chain A, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Apo Form
 pdb|1WYT|C Chain C, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Apo Form
 pdb|1WYU|A Chain A, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Holo Form
 pdb|1WYU|C Chain C, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Holo Form
 pdb|1WYU|E Chain E, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Holo Form
 pdb|1WYU|G Chain G, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Holo Form
 pdb|1WYV|A Chain A, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Inhibitor-Bound Form
 pdb|1WYV|C Chain C, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Inhibitor-Bound Form
 pdb|1WYV|E Chain E, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Inhibitor-Bound Form
 pdb|1WYV|G Chain G, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Inhibitor-Bound Form
          Length = 438

 Score =  218 bits (554), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 207/377 (54%), Gaps = 13/377 (3%)

Query: 106 TPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMN- 164
           T E+  +M   VG  +L+ L  A +PK I    +      E L E +++E +++LA+ N 
Sbjct: 7   TEEEIREMLRRVGAASLEDLF-AHLPKEILSPPIDLP---EPLPEWKVLEELRRLAAQNL 62

Query: 165 KVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLT 224
             +K+F+G G  + HVPPV+ + +     + T YTPYQ E++QG L++   +QTMIA+L 
Sbjct: 63  PAHKAFLGGGVRSHHVPPVV-QALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELA 121

Query: 225 GLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284
           GL ++NAS+ D  TA AE + +   +++  +   +++   HP+   +     +    K++
Sbjct: 122 GLEIANASMYDGATALAEGVLLA--LRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLL 179

Query: 285 VSDLKD----IDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI 340
              L+     +     +V  V+VQ P   G + D G F + AH  G   V   D L+L +
Sbjct: 180 TLPLEGGRTPLPEVGEEVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLSLGV 239

Query: 341 LKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPAL 400
           LKPPG  GADI VG  Q  G+PMG+GGPH  FLAT + + R +PGR+V  ++D  G+   
Sbjct: 240 LKPPGAYGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGF 299

Query: 401 RVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTF-AL 459
            + +Q REQ+IRR KA SNI T   L A M AMY    GPEGL+ +A +   +A    AL
Sbjct: 300 ILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHAL 359

Query: 460 GLKKLGTVEVQGLPFFD 476
            L+  G       PFF+
Sbjct: 360 LLEVPGVRPFTPKPFFN 376


>pdb|1LSN|A Chain A, Thermal Stability Determinants Of Chicken Egg-White
           Lysozyme Core Mutants: Hydrophobicity, Packing Volume
           And Conserved Buried Water Molecules
          Length = 129

 Score = 37.4 bits (85), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 11/90 (12%)

Query: 625 DQAQGYQEMFNNLGEWLCTI---TGFDSFSLQPNAGAAGEYAGLMVIRAY--HKARGDHH 679
           D  +GY     +LG W+C     + F++ +   N   + +Y  L +   +  +  R    
Sbjct: 18  DNYRGY-----SLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGS 72

Query: 680 RNVCIIPVSAHGTNPATAAM-CGMKIVSVG 708
           RN+C IP SA  ++  TAA+ C  KIVS G
Sbjct: 73  RNLCNIPCSALLSSDITAAVNCAKKIVSNG 102


>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
           Phosphoethanolamine
 pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
           Phosphoethanolamine
 pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
           Phosphoethanolamine
 pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
           Phosphoethanolamine
          Length = 514

 Score = 35.4 bits (80), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 683 CIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTH 742
            ++PVSAH      A   G+K+V    DA    ++  +R+A   N   ++     YP  H
Sbjct: 195 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYP--H 252

Query: 743 GVYEEGIDEICKIIHDNGGQVYMD 766
           GV +  I EI  +  ++G   ++D
Sbjct: 253 GVVDP-IPEIAALAAEHGIGCHVD 275


>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
 pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
          Length = 514

 Score = 35.4 bits (80), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 683 CIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTH 742
            ++PVSAH      A   G+K+V    DA    ++  +R+A   N   ++     YP  H
Sbjct: 195 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYP--H 252

Query: 743 GVYEEGIDEICKIIHDNGGQVYMD 766
           GV +  I EI  +  ++G   ++D
Sbjct: 253 GVVDP-IPEIAALAAEHGIGCHVD 275


>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
          Length = 518

 Score = 35.4 bits (80), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 683 CIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTH 742
            ++PVSAH      A   G+K+V    DA    ++  +R+A   N   ++     YP  H
Sbjct: 199 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYP--H 256

Query: 743 GVYEEGIDEICKIIHDNGGQVYMD 766
           GV +  I EI  +  ++G   ++D
Sbjct: 257 GVVDP-IPEIAALAAEHGIGCHVD 279


>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
          Length = 518

 Score = 35.4 bits (80), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 683 CIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTH 742
            ++PVSAH      A   G+K+V    DA    ++  +R+A   N   ++     YP  H
Sbjct: 199 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYP--H 256

Query: 743 GVYEEGIDEICKIIHDNGGQVYMD 766
           GV +  I EI  +  ++G   ++D
Sbjct: 257 GVVDP-IPEIAALAAEHGIGCHVD 279


>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
 pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
 pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
 pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
 pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
 pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
 pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
 pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
          Length = 584

 Score = 32.3 bits (72), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 649 SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHG 691
           SF+ +P+ GA  E+   MV +  H  R    +NVC+  +   G
Sbjct: 359 SFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEG 401


>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From
           Arabidopsis Thaliana
 pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From
           Arabidopsis Thaliana
          Length = 464

 Score = 32.3 bits (72), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 311 EVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRF 359
           ++ D     + AHA G  V++   +++  +L  P ELGADIV+ SA +F
Sbjct: 232 QISDIRKISEMAHAQGALVLVDNSIMS-PVLSRPLELGADIVMHSATKF 279


>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
           1.8 Angstroms
 pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
           1.8 Angstroms
          Length = 331

 Score = 32.3 bits (72), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 311 EVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRF 359
           +V+D  D +K A      +V+  +  A  IL  P +LG DIVV SA ++
Sbjct: 98  KVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKY 146


>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
           Protein Narl In The Monoclinic C2 Crystal Form
 pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
           Protein Narl In The Monoclinic C2 Crystal Form
 pdb|1RNL|A Chain A, The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM
           NARL
          Length = 215

 Score = 32.3 bits (72), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 517 LEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRY 576
           LE +DKL      G+ V F+ ++  E+V TA+  G      YL      K     +LL+ 
Sbjct: 67  LETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRG---ADGYLL-----KDMEPEDLLKA 118

Query: 577 IHLLQSKELSLCHSMIPLGSCTMKLN-ATTE 606
           +H   + E+ L  ++ P+ + +++ N ATTE
Sbjct: 119 LHQAAAGEMVLSEALTPVLAASLRANRATTE 149


>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
           With Semicarbazide
 pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
           With Semicarbazide
          Length = 514

 Score = 32.0 bits (71), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 683 CIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTH 742
            ++PVSAH      A   G+K+V    DA    ++  +R+A   N   ++      P  H
Sbjct: 195 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGXP--H 252

Query: 743 GVYEEGIDEICKIIHDNGGQVYMD 766
           GV +  I EI  +  ++G   ++D
Sbjct: 253 GVVDP-IPEIAALAAEHGIGCHVD 275


>pdb|2XN2|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
           Acidophilus Ncfm With Galactose
          Length = 732

 Score = 30.4 bits (67), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 14/100 (14%)

Query: 137 DSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYT 196
           + +K+ + D G +   + E + +  S + + K +   G  + H P  I+RN   + A + 
Sbjct: 48  NQLKYPRLDRGFS-GNLPESLDRTFSRDSLPKEYSSAGEMDFHTPATIVRNPDGSNALFL 106

Query: 197 QYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDE 236
            Y  Y+ E  +              DL GLP S     DE
Sbjct: 107 AYKSYKIEDGK-------------PDLKGLPHSWTKEDDE 133


>pdb|2XN0|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
           Acidophilus Ncfm, Ptcl4 Derivative
 pdb|2XN0|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
           Acidophilus Ncfm, Ptcl4 Derivative
 pdb|2XN1|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
           Acidophilus Ncfm With Tris
 pdb|2XN1|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
           Acidophilus Ncfm With Tris
 pdb|2XN1|C Chain C, Structure Of Alpha-Galactosidase From Lactobacillus
           Acidophilus Ncfm With Tris
 pdb|2XN1|D Chain D, Structure Of Alpha-Galactosidase From Lactobacillus
           Acidophilus Ncfm With Tris
          Length = 732

 Score = 30.4 bits (67), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 14/100 (14%)

Query: 137 DSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYT 196
           + +K+ + D G +   + E + +  S + + K +   G  + H P  I+RN   + A + 
Sbjct: 48  NQLKYPRLDRGFS-GNLPESLDRTFSRDSLPKEYSSAGEMDFHTPATIVRNPDGSNALFL 106

Query: 197 QYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDE 236
            Y  Y+ E  +              DL GLP S     DE
Sbjct: 107 AYKSYKIEDGK-------------PDLKGLPHSWTKEDDE 133


>pdb|3LFK|A Chain A, A Reported Archaeal Mechanosensitive Channel Is A
           Structural Homolog Of Marr-Like Transcriptional
           Regulators
 pdb|3LFK|B Chain B, A Reported Archaeal Mechanosensitive Channel Is A
           Structural Homolog Of Marr-Like Transcriptional
           Regulators
 pdb|3LFK|C Chain C, A Reported Archaeal Mechanosensitive Channel Is A
           Structural Homolog Of Marr-Like Transcriptional
           Regulators
 pdb|3LFK|D Chain D, A Reported Archaeal Mechanosensitive Channel Is A
           Structural Homolog Of Marr-Like Transcriptional
           Regulators
          Length = 129

 Score = 29.6 bits (65), Expect = 8.5,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 907 VDLRGLKNTAGI-EPEDVAKRLMDYGF 932
           + L  +KN  G+ +PE V K LMDYGF
Sbjct: 52  IPLYRIKNETGLKDPESVLKNLMDYGF 78


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,807,420
Number of Sequences: 62578
Number of extensions: 1295869
Number of successful extensions: 2983
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2969
Number of HSP's gapped (non-prelim): 22
length of query: 1050
length of database: 14,973,337
effective HSP length: 109
effective length of query: 941
effective length of database: 8,152,335
effective search space: 7671347235
effective search space used: 7671347235
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)