BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001580
(1050 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 230 bits (586), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 111/215 (51%), Positives = 158/215 (73%), Gaps = 4/215 (1%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
+I++RN F+W ++++ PTL I IP G+LVA+VG G GK+SL+SA+L E+ V +
Sbjct: 3 SITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EG 60
Query: 101 SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 160
I+G+VAYVPQ +WI N ++R+NILFG E Y I +L DL++LP GD TE
Sbjct: 61 HVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE 120
Query: 161 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGK 218
IGE+GVN+SGGQKQRVS+ARAVYSN+D+++FDDPLSA+DAHVG+ +F+ I +G L K
Sbjct: 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNK 180
Query: 219 TRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
TR+LVT+ + +L QVD II++ G + E G++++L
Sbjct: 181 TRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQEL 215
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 103/232 (44%), Gaps = 16/232 (6%)
Query: 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 724
SI + + PP L+G++F+IP V +VG+ G GKSS+L+ L ++ G +
Sbjct: 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 725 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA 784
I G + +PQ + + ++R N+ + + ++ L
Sbjct: 63 AIKGS-------------VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD 109
Query: 785 IRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKT 844
+ G ++ E G N S GQ+Q I + D+ +AVD I +
Sbjct: 110 LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEN 169
Query: 845 I---REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 893
+ + K+ T +++ H ++ + D I+++ G++ E + +ELL+ +G+
Sbjct: 170 VIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGA 221
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 134/222 (60%), Gaps = 5/222 (2%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--GTVAYVPQVS 115
P L NINL+I G ++AI G TG GKTSL+ +LGEL + +I+ G V++ Q S
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA---SEGIIKHSGRVSFCSQFS 108
Query: 116 WIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 175
WI T+++NI+FG +++ RY+ + LQ D+ D T +GE GV +SGGQ+ R
Sbjct: 109 WIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRAR 168
Query: 176 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDR 235
+S+ARAVY ++D+++ D P LD QVF+ C+ ++ KTR+LVT+++ L + D+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADK 228
Query: 236 IILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEK 277
I+++H+G GTF +L + F + +++ EE+
Sbjct: 229 ILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTEER 270
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 28/217 (12%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
PVL ++ I + + I G TG+GK+S+L + + ELE A G++
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLL--MLILGELE-----------ASEGIIKHS 98
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 800
+ Q + GT++ N+ + + ++ L+ I + + + + E G
Sbjct: 99 GRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 801 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 852
S GQR + +LD +DV T+ + F+SC
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV-------FESCVCKLMANK 211
Query: 853 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 889
T +++ ++ + D+IL+L G Y T EL S
Sbjct: 212 TRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 170 bits (431), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 134/222 (60%), Gaps = 5/222 (2%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--GTVAYVPQVS 115
P L NINL+I G ++AI G TG GKTSL+ +LGEL + +I+ G V++ Q S
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA---SEGIIKHSGRVSFCSQFS 108
Query: 116 WIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 175
WI T+++NI+FG +++ RY+ + LQ D+ D T +GE GV +SGGQ+ R
Sbjct: 109 WIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRAR 168
Query: 176 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDR 235
+S+ARAVY ++D+++ D P LD QVF+ C+ ++ KTR+LVT+++ L + D+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADK 228
Query: 236 IILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEK 277
I+++H+G GTF +L + F + +++ EE+
Sbjct: 229 ILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTEER 270
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 28/217 (12%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
PVL ++ I + + I G TG+GK+S+L + + ELE A G++
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLL--MLILGELE-----------ASEGIIKHS 98
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 800
+ Q + GT++ N+ + + ++ L+ I + + + + E G
Sbjct: 99 GRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 801 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 852
S GQR + +LD +DV T+ + F+SC
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV-------FESCVCKLMANK 211
Query: 853 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 889
T +++ ++ + D+IL+L G Y T EL S
Sbjct: 212 TRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 133/222 (59%), Gaps = 5/222 (2%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--GTVAYVPQVS 115
P L NINL+I G ++AI G TG GKTSL+ +LGEL + +I+ G V++ Q S
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA---SEGIIKHSGRVSFCSQFS 108
Query: 116 WIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 175
WI T+++NI+ G +++ RY+ + LQ D+ D T +GE GV +SGGQ+ R
Sbjct: 109 WIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRAR 168
Query: 176 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDR 235
+S+ARAVY ++D+++ D P LD QVF+ C+ ++ KTR+LVT+++ L + D+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADK 228
Query: 236 IILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEK 277
I+++H+G GTF +L + F + +++ EE+
Sbjct: 229 ILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTEER 270
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 86/217 (39%), Gaps = 28/217 (12%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
PVL ++ I + + I G TG+GK+S+L +LI G A G++
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLL-------------MLILGELEASEGIIKHS 98
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 800
+ Q + GT++ N+ + + ++ L+ I + + + + E G
Sbjct: 99 GRVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 801 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 852
S GQR + +LD +DV T+ + F+SC
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV-------FESCVCKLMANK 211
Query: 853 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 889
T +++ ++ + D+IL+L G Y T EL S
Sbjct: 212 TRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 133/222 (59%), Gaps = 5/222 (2%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--GTVAYVPQVS 115
P L NINL+I G ++AI G TG GKTSL+ +LGEL + +I+ G V++ Q S
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA---SEGIIKHSGRVSFCSQFS 108
Query: 116 WIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 175
WI T+++NI+ G +++ RY+ + LQ D+ D T +GE GV +SGGQ+ R
Sbjct: 109 WIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRAR 168
Query: 176 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDR 235
+S+ARAVY ++D+++ D P LD QVF+ C+ ++ KTR+LVT+++ L + D+
Sbjct: 169 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADK 228
Query: 236 IILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEK 277
I+++H+G GTF +L + F + +++ EE+
Sbjct: 229 ILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTEER 270
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 86/217 (39%), Gaps = 28/217 (12%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
PVL ++ I + + I G TG+GK+S+L +LI G A G++
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLL-------------MLILGELEASEGIIKHS 98
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 800
+ Q + GT++ N+ + + ++ L+ I + + + + E G
Sbjct: 99 GRVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 801 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 852
S GQR + +LD +DV T+ + F+SC
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV-------FESCVCKLMANK 211
Query: 853 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 889
T +++ ++ + D+IL+L G Y T EL S
Sbjct: 212 TRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 122/198 (61%), Gaps = 1/198 (0%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 117
P L +IN I G L+A+ G TG GKTSL+ ++GEL P S+ G +++ Q SWI
Sbjct: 34 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQFSWI 92
Query: 118 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177
T+++NI+FG +++ RY I L+ D+ D +GE G+ +SGGQ+ R+S
Sbjct: 93 MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 152
Query: 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 237
+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+
Sbjct: 153 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 212
Query: 238 LVHEGMVKEEGTFEDLSN 255
++HEG GTF +L N
Sbjct: 213 ILHEGSSYFYGTFSELQN 230
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 28/227 (12%)
Query: 669 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 728
E+V + PVL ++F I + + G TGAGK+S+L + +E G+I G
Sbjct: 22 ENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 81
Query: 729 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 788
+ Q + GT++ N+ + + ++ L++ I +
Sbjct: 82 -------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF 128
Query: 789 SLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREE 848
+ + + E G S GQR + +LD +DV T+ +E
Sbjct: 129 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE-------KEI 181
Query: 849 FKSC--------TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 887
F+SC T +++ ++ + D+IL+L G Y T EL
Sbjct: 182 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 228
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 166 bits (420), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 122/198 (61%), Gaps = 1/198 (0%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 117
P L +IN I G L+A+ G TG GKTSL+ ++GEL P S+ G +++ Q SWI
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQFSWI 80
Query: 118 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177
T+++NI+FG +++ RY I L+ D+ D +GE G+ +SGGQ+ R+S
Sbjct: 81 MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 140
Query: 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 237
+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+
Sbjct: 141 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 200
Query: 238 LVHEGMVKEEGTFEDLSN 255
++HEG GTF +L N
Sbjct: 201 ILHEGSSYFYGTFSELQN 218
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 28/227 (12%)
Query: 669 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 728
E+V + PVL ++F I + + G TGAGK+S+L + +E G+I G
Sbjct: 10 ENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69
Query: 729 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 788
+ Q + GT++ N+ + + ++ L++ I +
Sbjct: 70 R-------------ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF 116
Query: 789 SLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREE 848
+ + + E G S GQR + +LD +DV T+ +E
Sbjct: 117 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE-------KEI 169
Query: 849 FKSC--------TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 887
F+SC T +++ ++ + D+IL+L G Y T EL
Sbjct: 170 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 216
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 144/548 (26%), Positives = 249/548 (45%), Gaps = 61/548 (11%)
Query: 381 LFYNTIYSLLSF-----GQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTN 435
L TIY+L S G++++TL+ RL + + R P+ FF
Sbjct: 81 LILGTIYALTSLLFWLQGKIMLTLSQD---------VVFRLRKELFEKLQRVPVGFFDRT 131
Query: 436 PLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVL---IGIVSTMSLWAIMPXXX 492
P G II+R D+ +I+ + + F + L ++ + ++ ++ +I+P
Sbjct: 132 PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTV 191
Query: 493 XXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAY-------KAYDRMADI 545
S R+ + + E ++GL+ I+ + + +DR+ +
Sbjct: 192 LITQIV---SSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNES 248
Query: 546 NGKSMDKNIRYT-----LVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 600
K K ++ L+NM N A+ + G WL +
Sbjct: 249 LRKVGTKAQIFSGVLPPLMNMVNNLGFAL----ISGFGGWLALKDIIT-----------V 293
Query: 601 STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEA--PLVIESNRPPP 658
T+ + Y+ T L + ++ + +L + ER+ ++L E P +E
Sbjct: 294 GTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELRE--- 350
Query: 659 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 718
G I+F++V Y + PVL ++F I P KV +VG TG+GK++++N L R +
Sbjct: 351 ---VRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406
Query: 719 LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEA 775
++RG+IL+DG DI K LR +GI+ Q +LFS TV+ NL +P + +D ++ EA
Sbjct: 407 VDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGA--TDEEIKEA 464
Query: 776 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDV 835
+ H I+ G + +++ GE+ S GQRQ KIL+LDEAT+ VD
Sbjct: 465 AKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDT 524
Query: 836 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 895
+T+ IQ + + + T +IIAHRLNTI + D I++L G ++E +EL+ G +
Sbjct: 525 KTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYY 584
Query: 896 SKMVQSTG 903
G
Sbjct: 585 ELFTSQYG 592
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 122/238 (51%), Gaps = 20/238 (8%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------- 92
I +N +FS+D K +P L +I I G VA+VG TG GKT++++ ++
Sbjct: 355 IEFKNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412
Query: 93 -----ELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSL 146
++ + +S +R ++ V Q + +F+ TV++N+ +G+ ++A +T
Sbjct: 413 LVDGIDIRKIKRSS--LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHS 470
Query: 147 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
H + LP G T + + G ++S GQ+Q +++ RA +N + I D+ S +D + +
Sbjct: 471 DHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530
Query: 207 FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 264
+ + GKT +++ ++L+ + D II++ +G + E G ++L + +L
Sbjct: 531 -QAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELF 587
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 163 bits (412), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 133/222 (59%), Gaps = 6/222 (2%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--GTVAYVPQVS 115
P L NINL+I G ++AI G TG GKTSL+ +LGEL + +I+ G V++ Q S
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA---SEGIIKHSGRVSFCSQFS 108
Query: 116 WIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 175
WI T+++NI+ G +++ RY+ + LQ D+ D T +GE GV +SGGQ+ R
Sbjct: 109 WIMPGTIKENII-GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRAR 167
Query: 176 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDR 235
+S+ARAVY ++D+++ D P LD QVF+ C+ ++ KTR+LVT+++ L + D+
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADK 227
Query: 236 IILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEK 277
I+++H+G GTF +L + F + +++ EE+
Sbjct: 228 ILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTEER 269
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 88/217 (40%), Gaps = 29/217 (13%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
PVL ++ I + + I G TG+GK+S+L + + ELE A G++
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLL--MLILGELE-----------ASEGIIKHS 98
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 800
+ Q + GT++ N+ S + + ++ L+ I + + + + E G
Sbjct: 99 GRVSFCSQFSWIMPGTIKENIIGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 157
Query: 801 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 852
S GQR + +LD +DV T+ + F+SC
Sbjct: 158 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV-------FESCVCKLMANK 210
Query: 853 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 889
T +++ ++ + D+IL+L G Y T EL S
Sbjct: 211 TRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 247
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 162 bits (410), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 1/222 (0%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 117
P L +IN I G L+A+ G TG GKTSL+ ++GEL P S+ G +++ Q SWI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQFSWI 110
Query: 118 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177
T+++NI+ G +++ RY I L+ D+ D +GE G+ +SGGQ+ R+S
Sbjct: 111 MPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 170
Query: 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 237
+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 230
Query: 238 LVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKED 279
++HEG GTF +L N F + +++ E+ +
Sbjct: 231 ILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAERRN 272
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 86/215 (40%), Gaps = 28/215 (13%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
PVL ++F I + + G TGAGK+S+L + +E G+I G
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------ 99
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 800
+ Q + GT++ N+ + + ++ L++ I + + + + E G
Sbjct: 100 -RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 801 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 852
S GQR + +LD +DV T+ +E F+SC
Sbjct: 159 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE-------KEIFESCVCKLMANK 211
Query: 853 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 887
T +++ ++ + D+IL+L G Y T EL
Sbjct: 212 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 121/198 (61%), Gaps = 1/198 (0%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 117
P L +IN I G L+A+ G TG GKTSL+ ++GEL P S+ G +++ Q SWI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQFSWI 110
Query: 118 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177
T+++NI+FG +++ RY I L+ D+ D +GE G+ +S GQ+ ++S
Sbjct: 111 MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKIS 170
Query: 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 237
+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+
Sbjct: 171 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 230
Query: 238 LVHEGMVKEEGTFEDLSN 255
++HEG GTF +L N
Sbjct: 231 ILHEGSSYFYGTFSELQN 248
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 86/215 (40%), Gaps = 28/215 (13%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
PVL ++F I + + G TGAGK+S+L + +E G+I G
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------ 99
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 800
+ Q + GT++ N+ + + ++ L++ I + + + + E G
Sbjct: 100 -RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 801 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 852
S GQ+ + +LD +DV T+ +E F+SC
Sbjct: 159 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTE-------KEIFESCVCKLMANK 211
Query: 853 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 887
T +++ ++ + D+IL+L G Y T EL
Sbjct: 212 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 121/198 (61%), Gaps = 2/198 (1%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 117
P L +IN I G L+A+ G TG GKTSL+ ++GEL P S+ G +++ Q SWI
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQFSWI 80
Query: 118 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177
T+++NI+ G +++ RY I L+ D+ D +GE G+ +SGGQ+ R+S
Sbjct: 81 MPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 139
Query: 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 237
+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+
Sbjct: 140 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 199
Query: 238 LVHEGMVKEEGTFEDLSN 255
++HEG GTF +L N
Sbjct: 200 ILHEGSSYFYGTFSELQN 217
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 91/227 (40%), Gaps = 29/227 (12%)
Query: 669 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 728
E+V + PVL ++F I + + G TGAGK+S+L + +E G+I G
Sbjct: 10 ENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69
Query: 729 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 788
+ Q + GT++ N+ S + + ++ L++ I +
Sbjct: 70 R-------------ISFCSQFSWIMPGTIKENIIGVS-YDEYRYRSVIKACQLEEDISKF 115
Query: 789 SLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREE 848
+ + + E G S GQR + +LD +DV T+ +E
Sbjct: 116 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE-------KEI 168
Query: 849 FKSC--------TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 887
F+SC T +++ ++ + D+IL+L G Y T EL
Sbjct: 169 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 215
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 125/208 (60%), Gaps = 2/208 (0%)
Query: 48 YFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT 107
+FS S P L +IN I G L+A+ G TG GKTSL+ ++GEL P S+ G
Sbjct: 42 FFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGR 100
Query: 108 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 167
+++ Q SWI T+++NI+ G +++ RY I L+ D+ D +GE G+
Sbjct: 101 ISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT 159
Query: 168 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 227
+SGGQ+ R+S+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LVT+++
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 228 HFLSQVDRIILVHEGMVKEEGTFEDLSN 255
L + D+I+++HEG GTF +L N
Sbjct: 220 EHLKKADKILILHEGSSYFYGTFSELQN 247
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 29/215 (13%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
PVL ++F I + + G TGAGK+S+L + +E G+I G
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------ 99
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 800
+ Q+ + GT++ N+ S + + ++ L++ I + + + + E G
Sbjct: 100 -RISFCSQNSWIMPGTIKENIIGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 801 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 852
S GQR + +LD +DV T+ +E F+SC
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE-------KEIFESCVCKLMANK 210
Query: 853 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 887
T +++ ++ + D+IL+L G Y T EL
Sbjct: 211 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 195/370 (52%), Gaps = 13/370 (3%)
Query: 525 EALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV---GGLMIWL 581
E L G+ +RA++ + + N + ++++R ++++ + A+ L I G++ L
Sbjct: 207 ENLLGVRVVRAFRR-EEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVL 265
Query: 582 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI 641
+V+N E +G +++Y + ++ +++ + ++ + A +
Sbjct: 266 WFGGVLVRNNQME--------IGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVL 317
Query: 642 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGR 701
E+ +E P + E++ GS+ FE+V RY PVL G++F++ P V ++G
Sbjct: 318 EVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGE 377
Query: 702 TGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 761
TG+GKS+++N + R+++ ERGR+ +D D+ L DLR + +PQ VLFSGT++ NL
Sbjct: 378 TGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENL 437
Query: 762 DPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXX 820
E +D ++ EA + A + D I G D++V G NFS GQ+Q
Sbjct: 438 KWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKK 497
Query: 821 XKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 880
K+L+LD+ T++VD T+ I ++ K CT II ++ T + D+IL+L G+V
Sbjct: 498 PKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAG 557
Query: 881 YDTPEELLSN 890
+ T +ELL +
Sbjct: 558 FGTHKELLEH 567
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 144/281 (51%), Gaps = 31/281 (11%)
Query: 8 VVNANVSLKRMEEFL-------LAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTL 60
+V A+ S KR+ E L A+ + LPN G ++S N F + + P L
Sbjct: 306 IVRASASAKRVLEVLNEKPAIEEADNALALPN---VEG--SVSFENVEFRYFENTD-PVL 359
Query: 61 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 108
+N + GSLVA++G TG GK++L++ + + P V +RG +
Sbjct: 360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419
Query: 109 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ--HDLDL-LPGGDVTEIGERG 165
+ VPQ + +F+ T+++N+ +G E A ++ ++ + HD + LP G + + G
Sbjct: 420 SAVPQETVLFSGTIKENLKWGR--EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGG 477
Query: 166 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 225
N SGGQKQR+S+ARA+ V I DD S++D +++ D R G T ++T
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR-YTKGCTTFIITQ 536
Query: 226 QLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 266
++ D+I+++HEG V GT ++L + + ++++ E+
Sbjct: 537 KIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYES 577
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 121/198 (61%), Gaps = 2/198 (1%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 117
P L +IN I G L+A+ G TG GKTSL+ ++GEL P S+ G +++ Q SWI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQNSWI 110
Query: 118 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177
T+++NI+ G +++ RY I L+ D+ D +GE G+ +SGGQ+ R+S
Sbjct: 111 MPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 169
Query: 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 237
+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 229
Query: 238 LVHEGMVKEEGTFEDLSN 255
++HEG GTF +L N
Sbjct: 230 ILHEGSSYFYGTFSELQN 247
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 29/215 (13%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
PVL ++F I + + G TGAGK+S+L + +E G+I G
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------ 99
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 800
+ Q+ + GT++ N+ S + + ++ L++ I + + + + E G
Sbjct: 100 -RISFCSQNSWIMPGTIKENIIGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 801 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 852
S GQR + +LD +DV T+ +E F+SC
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE-------KEIFESCVCKLMANK 210
Query: 853 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 887
T +++ ++ + D+IL+L G Y T EL
Sbjct: 211 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 131/236 (55%), Gaps = 1/236 (0%)
Query: 660 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 719
WPS G + +D+ +Y +L +SF+I P +VG++GRTG+GKS++L+ R++
Sbjct: 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT 73
Query: 720 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 779
E G I IDG L RK G+IPQ +FSGT R NLDP + HSD ++W+ +
Sbjct: 74 E-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEV 132
Query: 780 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDA 839
L+ I + LD + + G S G +Q KIL+LDE +A +D T
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 840 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 895
+I++T+++ F CT+++ R+ +++CD+ L+++ +V +YD+ EL F
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRF 248
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 12/198 (6%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAML------GELP--PVSDASAVI---RGTV 108
L NI+ I G V ++G TG GK++L+SA L GE+ VS S + R
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAF 96
Query: 109 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 168
+PQ +IF+ T R N+ +A K D L+ ++ PG + + G +
Sbjct: 97 GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVL 156
Query: 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 228
S G KQ + +AR+V S + + + D+P + LD V Q+ R ++ + T +L ++
Sbjct: 157 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDP-VTYQIIRRTLKQAFADCTVILCEARIE 215
Query: 229 FLSQVDRIILVHEGMVKE 246
+ + D+ +++ E V++
Sbjct: 216 AMLECDQFLVIEENKVRQ 233
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 120/198 (60%), Gaps = 2/198 (1%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 117
P L +IN I G L+A+ G TG GKTSL+ ++GEL P S+ G +++ Q SWI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQFSWI 110
Query: 118 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 177
T+++NI+ G +++ RY I L+ D+ D +GE G+ +S GQ+ ++S
Sbjct: 111 MPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKIS 169
Query: 178 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 237
+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 229
Query: 238 LVHEGMVKEEGTFEDLSN 255
++HEG GTF +L N
Sbjct: 230 ILHEGSSYFYGTFSELQN 247
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 29/215 (13%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
PVL ++F I + + G TGAGK+S+L + +E G+I G
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------ 99
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 800
+ Q + GT++ N+ S + + ++ L++ I + + + + E G
Sbjct: 100 -RISFCSQFSWIMPGTIKENIIGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 801 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC-------- 852
S GQ+ + +LD +DV T+ +E F+SC
Sbjct: 158 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTE-------KEIFESCVCKLMANK 210
Query: 853 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 887
T +++ ++ + D+IL+L G Y T EL
Sbjct: 211 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 127/522 (24%), Positives = 234/522 (44%), Gaps = 42/522 (8%)
Query: 390 LSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLG 449
L F + L A+SY L S ++ + + + P+ FF G +++R D
Sbjct: 74 LMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYD-- 131
Query: 450 DIDRNVAVFVNMFMGQVSQLLSTFV-----LIGIVSTMSLW-------AIMPXXXXXXXX 497
VA G S+ L + V +IG+++ M W ++
Sbjct: 132 --SEQVA-------GATSRALVSIVREGASIIGLLTLM-FWNSWQLSLVLIVVAPVVAFA 181
Query: 498 XXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDK---NI 554
R++ R V + + L G + +Y ++ K DK ++
Sbjct: 182 ISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGG----QEVERKRFDKVSNSM 237
Query: 555 RYTLVNMGANRWLA-IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNI 613
R + + + + +A ++++ L ++ A V + AE T ++ S +
Sbjct: 238 RQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPG---TFTVVFSAMFGL 294
Query: 614 TSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVL 673
L A+ + S + + A + + ++L +E N +G + +DV
Sbjct: 295 MRPLKALTSVTSEFQRGMAACQTLFGLMDLETE-----RDNGKYEAERVNGEVDVKDVTF 349
Query: 674 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 733
Y+ + P L +SF+IP V +VGR+G+GKS++ N R +++ G I +DG D+
Sbjct: 350 TYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD 409
Query: 734 FGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLG 791
+ L +LR+ ++ Q+ LF+ T+ N+ + E++ + +A +AH + I G
Sbjct: 410 YKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQG 469
Query: 792 LDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKS 851
LD + E G + S GQRQ +L+LDEAT+A+D ++ IQ + E K+
Sbjct: 470 LDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN 529
Query: 852 CTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 893
T+L+IAHRL+TI D IL++D G ++E +LL+ +G+
Sbjct: 530 KTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGA 571
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 26/231 (11%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
+ +++ F++ K E+P L +++ IP G VA+VG +G GK++ I+ + V S
Sbjct: 342 VDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKST-IANLFTRFYDVDSGS 399
Query: 102 AVIRGT-------------VAYVPQVSWIFNATVRDNILFGSAFEPAR--YEKAIDVTSL 146
+ G A V Q +FN T+ +NI + + E R E+A
Sbjct: 400 ICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHA 459
Query: 147 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
++ +P G T IGE G ++SGGQ+QRV++ARA+ ++ V I D+ SALD
Sbjct: 460 MEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES---- 515
Query: 207 FDRCIRGEL----SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
+R I+ L KT +++ ++L + Q D I++V EG + E G DL
Sbjct: 516 -ERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADL 565
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 122/477 (25%), Positives = 223/477 (46%), Gaps = 33/477 (6%)
Query: 431 FFHTNPLGRIINRFAKDLGDI-DRNVAVFVNMFMGQVSQL--LSTFVLIGIVSTMSLWAI 487
F+ N +G++I+R D+ D + +N+++ ++ + LS + + T++ I
Sbjct: 111 FYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFI 170
Query: 488 MPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 547
P R++ R S + V E + G+S ++++ D A
Sbjct: 171 FPFYILTVYVFF---GRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEA---- 223
Query: 548 KSMDK-NIRYTLVNMGANRWLAIRLEIVGG-------LMIWLTATFAVVQNGSAENQEAF 599
K+ DK N + + RW A + ++I + A A+ + + AF
Sbjct: 224 KNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAF 283
Query: 600 ASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 659
+ LL + + T + + S +++RV +L E + P
Sbjct: 284 VGYLELLFGPLRRLVASFTTLTQ-------SFASMDRV---FQLIDEDYDIKNGVGAQPI 333
Query: 660 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 719
G I + V +Y P+L ++ +I + V VG +G GKS+++N + R ++
Sbjct: 334 EIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV 393
Query: 720 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEAL 776
G+ILIDG +I F LR +G++ Q +LFS TV+ N+ P + +D ++ EA
Sbjct: 394 TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA--TDEEVVEAA 451
Query: 777 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVR 836
+ A+ D I G D +V E G S GQ+Q IL+LDEAT+A+D+
Sbjct: 452 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511
Query: 837 TDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 893
++++IQ+ + K T LI+AHRL+TI D+I+++++G ++E T EL++ +G+
Sbjct: 512 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGA 568
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 119/238 (50%), Gaps = 26/238 (10%)
Query: 38 GLPAISIRNGYFSWDSKA------ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML 91
G I I+ G D + E P L +INL I G VA VG +G GK++LI+ ++
Sbjct: 329 GAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLIN-LI 387
Query: 92 GELPPVSDASAVI-------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 138
V+ +I R + V Q + +F+ TV++NIL G A E
Sbjct: 388 PRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP--TATDE 445
Query: 139 KAIDVTSLQ--HDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 195
+ ++ + HD + LP G TE+GERGV +SGGQKQR+S+AR +N + I D+
Sbjct: 446 EVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEAT 505
Query: 196 SALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
SALD + + +T ++V ++L ++ D+I+++ G + E GT +L
Sbjct: 506 SALDLE-SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHREL 562
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 139 bits (350), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 139/524 (26%), Positives = 235/524 (44%), Gaps = 54/524 (10%)
Query: 403 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNV------- 455
Y + S RL ++ SILR + FF G +INR + D + R+V
Sbjct: 84 YLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDG 143
Query: 456 -------AVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREV 508
+V ++M M VS L+TFVL +V +S+ A++ R +
Sbjct: 144 LRAGAQASVGISM-MFFVSPNLATFVL-SVVPPVSIIAVI---------------YGRYL 186
Query: 509 KRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR-MADIN--GKSMDKNIRYTLVNMGANR 565
++L +T+ + A + +R +A+ + M +I +D ++ A
Sbjct: 187 RKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARA 246
Query: 566 WLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLAS 625
+ G L++ + GSA S+ L YA + + + S
Sbjct: 247 GFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSS---FLMYAFWVGISIGGLSSFYS 303
Query: 626 LAENSLNAVERVGNYIELPSEAPL---VIESNRPPPGWPSSGSIKFEDVVLRY--RPELP 680
L A R+ +E + P VI + + G+++F++V Y RPE+P
Sbjct: 304 ELMKGLGAGGRLWELLEREPKLPFNEGVILNEKS-----FQGALEFKNVHFAYPARPEVP 358
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
+ S +IP +VG +G+GKS++L+ L R+ + G I +DG DI + + LR
Sbjct: 359 -IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417
Query: 741 KILGIIPQSPVLFSGTVRFNL-----DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ 795
+G + Q P+LFS ++ N+ DP S ++ ++ E A+ IR G +
Sbjct: 418 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAE-EIQRVAEVANAVAFIRNFPQGFNTV 476
Query: 796 VSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 855
V E G S GQ+Q KIL+LDEAT+A+D + L+Q+ + T+L
Sbjct: 477 VGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVL 536
Query: 856 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 899
+IAHRL+TI + + + +LD G++ EY EELLS + K++
Sbjct: 537 VIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 580
Score = 109 bits (272), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 132/244 (54%), Gaps = 24/244 (9%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
A+ +N +F++ ++ E P + +L IP GS+ A+VG +G GK++++S +L P S
Sbjct: 341 ALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT 400
Query: 101 SAV------------IRGTVAYVPQVSWIFNATVRDNILFG----SAFEPARYEKAIDVT 144
++ +R + V Q +F+ ++ +NI +G S+ ++ +V
Sbjct: 401 ISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVA 460
Query: 145 SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA---H 201
+ + P G T +GE+GV +SGGQKQR+++ARA+ N + + D+ SALDA +
Sbjct: 461 NAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEY 520
Query: 202 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED-LSNNGELF 260
+ ++ DR + G+T +++ ++L + + + ++ +G + E G E+ LS ++
Sbjct: 521 LVQEALDRL----MDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIY 576
Query: 261 QKLM 264
+KLM
Sbjct: 577 RKLM 580
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 138/524 (26%), Positives = 234/524 (44%), Gaps = 54/524 (10%)
Query: 403 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNV------- 455
Y + S RL ++ SILR + FF G +INR + D + R+V
Sbjct: 115 YLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDG 174
Query: 456 -------AVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREV 508
+V ++M M VS L+TFVL +V +S+ A++ R +
Sbjct: 175 LRAGAQASVGISM-MFFVSPNLATFVL-SVVPPVSIIAVI---------------YGRYL 217
Query: 509 KRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR-MADIN--GKSMDKNIRYTLVNMGANR 565
++L +T+ + A + +R +A+ + M +I +D ++ A
Sbjct: 218 RKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARA 277
Query: 566 WLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLAS 625
+ G L++ + GSA S+ L YA + + + S
Sbjct: 278 GFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSS---FLMYAFWVGISIGGLSSFYS 334
Query: 626 LAENSLNAVERVGNYIELPSEAPL---VIESNRPPPGWPSSGSIKFEDVVLRY--RPELP 680
L A R+ +E + P VI + + G+++F++V Y RPE+P
Sbjct: 335 ELMKGLGAGGRLWELLEREPKLPFNEGVILNEKS-----FQGALEFKNVHFAYPARPEVP 389
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
+ S +IP +VG +G+GKS++L+ L R+ + G I +DG DI + + LR
Sbjct: 390 -IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 448
Query: 741 KILGIIPQSPVLFSGTVRFNL-----DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ 795
+G + Q P+LFS ++ N+ DP S ++ ++ E A+ IR G +
Sbjct: 449 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAE-EIQRVAEVANAVAFIRNFPQGFNTV 507
Query: 796 VSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 855
V E G S GQ+Q KIL+LDEAT+A+D + L+Q+ + T+L
Sbjct: 508 VGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVL 567
Query: 856 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 899
+IAH L+TI + + + +LD G++ EY EELLS + K++
Sbjct: 568 VIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 611
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 131/244 (53%), Gaps = 24/244 (9%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
A+ +N +F++ ++ E P + +L IP GS+ A+VG +G GK++++S +L P S
Sbjct: 372 ALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT 431
Query: 101 SAV------------IRGTVAYVPQVSWIFNATVRDNILFG----SAFEPARYEKAIDVT 144
++ +R + V Q +F+ ++ +NI +G S+ ++ +V
Sbjct: 432 ISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVA 491
Query: 145 SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA---H 201
+ + P G T +GE+GV +SGGQKQR+++ARA+ N + + D+ SALDA +
Sbjct: 492 NAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEY 551
Query: 202 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED-LSNNGELF 260
+ ++ DR + G+T +++ + L + + + ++ +G + E G E+ LS ++
Sbjct: 552 LVQEALDRL----MDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIY 607
Query: 261 QKLM 264
+KLM
Sbjct: 608 RKLM 611
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 136 bits (343), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 139/572 (24%), Positives = 259/572 (45%), Gaps = 56/572 (9%)
Query: 383 YNTIYSLLSFGQVLVTLAN-SYWLIISSLYAAKRLH---DAMLHSILRAPMVFFHTNPLG 438
Y Y+ + G ++V S+W L A +++H H+I+ + +F + +G
Sbjct: 110 YAYYYTGIGAGVLIVAYIQVSFW----CLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVG 165
Query: 439 RIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS----TMSLWAIMPXXXXX 494
+ R D+ I+ + + MF ++ F+ IG T+ + AI P
Sbjct: 166 ELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFI-IGFTRGWKLTLVILAISPVLGLS 224
Query: 495 XXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNI 554
S+ + K L + ++ A+ E L + T+ A+ + + ++++
Sbjct: 225 AGIWAKILSSFTD-KELHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEAK 281
Query: 555 RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNIT 614
R +G + + + + G + + A++A+ AF L++S +I
Sbjct: 282 R-----LGIKKAITANISM-GAAFLLIYASYAL----------AFWYGTSLVISKEYSIG 325
Query: 615 SLLTAVLRLA----SLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG------ 664
+LT + S+ + S N +E N E +I++ + SG
Sbjct: 326 QVLTVFFSVLIGAFSVGQASPN-IEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNI 384
Query: 665 --SIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 720
+++F+++ Y R E+ +L GL+ + V +VG +G GKS+ + + R+ +
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQ-ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL 443
Query: 721 RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD-LWEALERA 779
G + IDG DI + LR+I+G++ Q PVLF+ T+ N+ E D + +A++ A
Sbjct: 444 DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEA 503
Query: 780 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDA 839
+ D I + D V E G S GQ+Q KIL+LDEAT+A+D ++A
Sbjct: 504 NAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA 563
Query: 840 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 899
++Q + + + T ++IAHRL+T+ + D I D G ++E +EL+ +G F K+V
Sbjct: 564 VVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYF-KLV 622
Query: 900 QSTGAANAQYLRSLVLGGEAENKLREENKQID 931
+ A N + LG EA K ++E +D
Sbjct: 623 MTQTAGN-----EIELGNEA-CKSKDEIDNLD 648
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 160/300 (53%), Gaps = 12/300 (4%)
Query: 619 AVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPS--SGSIKFEDVVLRY- 675
AV +++S A + A + I + + P I+S P+ G+++F VV Y
Sbjct: 983 AVGQVSSFAPDYAKATVSASHIIRIIEKTP-EIDSYSTQGLKPNMLEGNVQFSGVVFNYP 1041
Query: 676 -RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 734
RP +P VL GLS + + +VG +G GKS+++ L R + G + +DG +I +
Sbjct: 1042 TRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQL 1100
Query: 735 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSL-- 790
+ LR LGI+ Q P+LF ++ N+ + ++S +E + RA + I + +SL
Sbjct: 1101 NVQWLRAQLGIVSQEPILFDCSIAENI-AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPD 1159
Query: 791 GLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFK 850
+ +V + G S GQ+Q IL+LDEAT+A+D ++ ++Q+ + + +
Sbjct: 1160 KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE 1219
Query: 851 SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYL 910
T ++IAHRL+TI + D I+++ +G+V E+ T ++LL+ +G FS MV A Y+
Sbjct: 1220 GRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFS-MVSVQAGAKRSYV 1278
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 120/242 (49%), Gaps = 17/242 (7%)
Query: 49 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAV 103
F++ ++ P L ++L++ G +A+VG +G GK++++ + P++ D +
Sbjct: 1038 FNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEI 1097
Query: 104 -------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE---KAIDVTSLQHDLDLL 153
+R + V Q +F+ ++ +NI +G YE +A ++ +D L
Sbjct: 1098 KQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 154 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 213
P T +G++G +SGGQKQR+++ARA+ + + D+ SALD +V +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE-SEKVVQEALDK 1216
Query: 214 ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED-LSNNGELFQKLMENAGKMEE 272
G+T +++ ++L + D I+++ G VKE GT + L+ G F + AG
Sbjct: 1217 AREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276
Query: 273 YV 274
YV
Sbjct: 1277 YV 1278
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 125/260 (48%), Gaps = 17/260 (6%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
+ +N +FS+ S+ E L +NL + G VA+VG +G GK++ + M P+
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 102 AV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQH 148
++ +R + V Q +F T+ +NI +G EKA+ +
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYD 507
Query: 149 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 208
+ LP T +GERG +SGGQKQR+++ARA+ N + + D+ SALD V
Sbjct: 508 FIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE-SEAVVQ 566
Query: 209 RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM--EN 266
+ G+T +++ ++L + D I G++ E+G ++L ++ KL+ +
Sbjct: 567 AALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626
Query: 267 AG-KMEEYVEEKEDGETVDN 285
AG ++E E + + +DN
Sbjct: 627 AGNEIELGNEACKSKDEIDN 646
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 136 bits (343), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 139/572 (24%), Positives = 259/572 (45%), Gaps = 56/572 (9%)
Query: 383 YNTIYSLLSFGQVLVTLAN-SYWLIISSLYAAKRLH---DAMLHSILRAPMVFFHTNPLG 438
Y Y+ + G ++V S+W L A +++H H+I+ + +F + +G
Sbjct: 110 YAYYYTGIGAGVLIVAYIQVSFW----CLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVG 165
Query: 439 RIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS----TMSLWAIMPXXXXX 494
+ R D+ I+ + + MF ++ F+ IG T+ + AI P
Sbjct: 166 ELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFI-IGFTRGWKLTLVILAISPVLGLS 224
Query: 495 XXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNI 554
S+ + K L + ++ A+ E L + T+ A+ + + ++++
Sbjct: 225 AGIWAKILSSFTD-KELHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEAK 281
Query: 555 RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNIT 614
R +G + + + + G + + A++A+ AF L++S +I
Sbjct: 282 R-----LGIKKAITANISM-GAAFLLIYASYAL----------AFWYGTSLVISKEYSIG 325
Query: 615 SLLTAVLRLA----SLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG------ 664
+LT + S+ + S N +E N E +I++ + SG
Sbjct: 326 QVLTVFFSVLIGAFSVGQASPN-IEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNI 384
Query: 665 --SIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 720
+++F+++ Y R E+ +L GL+ + V +VG +G GKS+ + + R+ +
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQ-ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL 443
Query: 721 RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD-LWEALERA 779
G + IDG DI + LR+I+G++ Q PVLF+ T+ N+ E D + +A++ A
Sbjct: 444 DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEA 503
Query: 780 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDA 839
+ D I + D V E G S GQ+Q KIL+LDEAT+A+D ++A
Sbjct: 504 NAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA 563
Query: 840 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 899
++Q + + + T ++IAHRL+T+ + D I D G ++E +EL+ +G F K+V
Sbjct: 564 VVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYF-KLV 622
Query: 900 QSTGAANAQYLRSLVLGGEAENKLREENKQID 931
+ A N + LG EA K ++E +D
Sbjct: 623 MTQTAGN-----EIELGNEA-CKSKDEIDNLD 648
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 160/300 (53%), Gaps = 12/300 (4%)
Query: 619 AVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPS--SGSIKFEDVVLRY- 675
AV +++S A + A + I + + P I+S P+ G+++F VV Y
Sbjct: 983 AVGQVSSFAPDYAKATVSASHIIRIIEKTP-EIDSYSTQGLKPNMLEGNVQFSGVVFNYP 1041
Query: 676 -RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 734
RP +P VL GLS + + +VG +G GKS+++ L R + G + +DG +I +
Sbjct: 1042 TRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQL 1100
Query: 735 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSL-- 790
+ LR LGI+ Q P+LF ++ N+ + ++S +E + RA + I + +SL
Sbjct: 1101 NVQWLRAQLGIVSQEPILFDCSIAENI-AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPD 1159
Query: 791 GLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFK 850
+ +V + G S GQ+Q IL+LDEAT+A+D ++ ++Q+ + + +
Sbjct: 1160 KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE 1219
Query: 851 SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYL 910
T ++IAHRL+TI + D I+++ +G+V E+ T ++LL+ +G FS MV A Y+
Sbjct: 1220 GRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFS-MVSVQAGAKRSYV 1278
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 120/242 (49%), Gaps = 17/242 (7%)
Query: 49 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAV 103
F++ ++ P L ++L++ G +A+VG +G GK++++ + P++ D +
Sbjct: 1038 FNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEI 1097
Query: 104 -------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE---KAIDVTSLQHDLDLL 153
+R + V Q +F+ ++ +NI +G YE +A ++ +D L
Sbjct: 1098 KQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 154 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 213
P T +G++G +SGGQKQR+++ARA+ + + D+ SALD +V +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE-SEKVVQEALDK 1216
Query: 214 ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED-LSNNGELFQKLMENAGKMEE 272
G+T +++ ++L + D I+++ G VKE GT + L+ G F + AG
Sbjct: 1217 AREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276
Query: 273 YV 274
YV
Sbjct: 1277 YV 1278
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 125/260 (48%), Gaps = 17/260 (6%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
+ +N +FS+ S+ E L +NL + G VA+VG +G GK++ + M P+
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 102 AV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQH 148
++ +R + V Q +F T+ +NI +G EKA+ +
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYD 507
Query: 149 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 208
+ LP T +GERG +SGGQKQR+++ARA+ N + + D+ SALD V
Sbjct: 508 FIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE-SEAVVQ 566
Query: 209 RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM--EN 266
+ G+T +++ ++L + D I G++ E+G ++L ++ KL+ +
Sbjct: 567 AALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626
Query: 267 AG-KMEEYVEEKEDGETVDN 285
AG ++E E + + +DN
Sbjct: 627 AGNEIELGNEACKSKDEIDN 646
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 128/233 (54%), Gaps = 2/233 (0%)
Query: 662 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
++G ++F +V Y P L ++ IP V +VGR+G+GKS++ + + R +++
Sbjct: 338 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 722 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD--PFSEHSDADLWEALERA 779
G IL+DG D+ ++ L LR + ++ Q+ LF+ TV N+ E+S + EA A
Sbjct: 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMA 457
Query: 780 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDA 839
+ D I + GLD + E G S GQRQ IL+LDEAT+A+D ++
Sbjct: 458 YAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 840 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 892
IQ + E K+ T L+IAHRL+TI D I++++ G ++E T ELL+ G
Sbjct: 518 AIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG 570
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 127/242 (52%), Gaps = 28/242 (11%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
+ RN F++ + E P L NINL IP G VA+VG +G GK++ I++++ + +
Sbjct: 342 LEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKST-IASLITRFYDIDEGH 399
Query: 102 -------------AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 148
A +R VA V Q +FN TV +NI + E +R E+ + + +
Sbjct: 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR-EQIEEAARMAY 458
Query: 149 DLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 205
+D + G T IGE GV +SGGQ+QR+++ARA+ +S + I D+ SALD
Sbjct: 459 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES--- 515
Query: 206 VFDRCIRGEL----SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQ 261
+R I+ L +T +++ ++L + Q D I++V +G++ E GT +L ++
Sbjct: 516 --ERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYA 573
Query: 262 KL 263
+L
Sbjct: 574 QL 575
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 139/528 (26%), Positives = 237/528 (44%), Gaps = 64/528 (12%)
Query: 393 GQVLVTLANSYWLIISSLYAAK----RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDL 448
GQ+ VT LY A+ RL + SILR + +F TN G + + +L
Sbjct: 153 GQITVT---------CYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNL 203
Query: 449 GDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS---TMSLWAIMPXXXXXXXXXXXXQST- 504
+ + M +SQ ++ F++ S T+ + A+ P ST
Sbjct: 204 ERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTF 263
Query: 505 -AREVKRLDSITRSPVYAQFGEALN-GLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 562
RE R YA+ G+ + +S+IR + +NG +RY L
Sbjct: 264 AIRETLR---------YAKAGKVVEETISSIRT------VVSLNG------LRYELERYS 302
Query: 563 ANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFAST----MGLLLSYALNITSLLT 618
A + ++ GL +L +F +Q A N +FA +G + +LN +LT
Sbjct: 303 TAVEEAKKAGVLKGL--FLGISFGAMQ---ASNFISFALAFYIGVGWVHDGSLNFGDMLT 357
Query: 619 A---------VLRLASLAENSLNAVERVGNYI-ELPSEAPLVIESNRPP-PGWPSSGSIK 667
L LA L + + I E+ P++ S++ G I
Sbjct: 358 TFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDIT 417
Query: 668 FEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
E+V Y RP++P +L G++ + V +VG +G GKS++++ L R ++ +G+I
Sbjct: 418 VENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKIT 476
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDA 784
IDG D+ L LRK + ++ Q P LF+ T+ N+ E + ++ A + A+ +
Sbjct: 477 IDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKF 536
Query: 785 IRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKT 844
I+ G + V + G S GQ+Q KIL+LDEAT+A+D ++ ++Q+
Sbjct: 537 IKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQA 596
Query: 845 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 892
+ + K T +IIAHRL+TI + D I+ +G+V+E L++ +G
Sbjct: 597 LDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQG 644
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 133/243 (54%), Gaps = 9/243 (3%)
Query: 664 GSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
G + F++V Y RPE+ +L GLSF++ P + +VG +G GKS+++ L R +
Sbjct: 1075 GKVIFKNVRFAYPERPEIE-ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG 1133
Query: 722 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVR----FNLDPFSEHSDADLWEALE 777
G I IDG +I R + I+ Q P LF ++ + LDP S + A + EA
Sbjct: 1134 GEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP-SSVTMAQVEEAAR 1192
Query: 778 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRT 837
A++ + I G + +V + G S GQ+Q KIL+LDEAT+A+D +
Sbjct: 1193 LANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252
Query: 838 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 897
+ ++Q+ + + T ++IAHRLNT+++ D I ++ +G ++E T +L+S +G ++ K
Sbjct: 1253 EKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKG-AYYK 1311
Query: 898 MVQ 900
+ Q
Sbjct: 1312 LTQ 1314
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 111/456 (24%), Positives = 210/456 (46%), Gaps = 51/456 (11%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-------GEL 94
I++ N +F++ S+ + P L +NL + G VA+VG +G GK+++IS +L G++
Sbjct: 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475
Query: 95 P----PVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSLQH 148
V D + +R VA V Q +FN T+ +NI G A + + +
Sbjct: 476 TIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEK 535
Query: 149 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH---VGRQ 205
+ LP G T +G+RG +SGGQKQR+++ARA+ N + + D+ SALDA + +Q
Sbjct: 536 FIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ 595
Query: 206 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 265
D+ + G+T +++ ++L + D II G V E G L L+ L+
Sbjct: 596 ALDKAAK----GRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLV- 650
Query: 266 NAGKMEEYVEEKEDGE-----TVDNKTSKP-----AANGVDNDLPKEAS----------- 304
A + V+ +G+ +V +TS+ A+ +D+ + + S
Sbjct: 651 TAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPV 710
Query: 305 -DTRKTKEGKSVL--IKQEERETGVVS---FKVLSRYK-DAXXXXXXXXXXXXCYFLTET 357
D ++ + GK L +KQE E F++L + A F+ T
Sbjct: 711 IDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPT 770
Query: 358 LRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLH 417
V +++++ + + F+ ++ +L+ Q + + ++++ I+S + L
Sbjct: 771 YSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLR 830
Query: 418 DAMLHSILRAPMVFFHT--NPLGRIINRFAKDLGDI 451
+ + ++L + FF + N G+I R A D+ ++
Sbjct: 831 NKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNL 866
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 125/239 (52%), Gaps = 20/239 (8%)
Query: 44 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS-------AMLGELPP 96
+N F++ + E L ++ + G +A+VG +G GK+++++ + GE+
Sbjct: 1079 FKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI-- 1136
Query: 97 VSDASAV-------IRGTVAYVPQVSWIFNATVRDNILFG---SAFEPARYEKAIDVTSL 146
D S + R +A V Q +F+ ++ +NI++G S+ A+ E+A + ++
Sbjct: 1137 FIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANI 1196
Query: 147 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
+ + LP G T +G+RG +SGGQKQR+++ARA+ N + + D+ SALD + V
Sbjct: 1197 HNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVV 1256
Query: 207 FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 265
+ R G+T +++ ++L+ + D I +V G + E+GT L + + KL +
Sbjct: 1257 QEALDRAR-EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQ 1314
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 128/233 (54%), Gaps = 2/233 (0%)
Query: 662 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
++G ++F +V Y P L ++ IP V +VGR+G+GKS++ + + R +++
Sbjct: 338 ATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 722 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD--PFSEHSDADLWEALERA 779
G IL+DG D+ ++ L LR + ++ Q+ LF+ TV N+ ++S + EA A
Sbjct: 398 GEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMA 457
Query: 780 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDA 839
+ D I + GLD + E G S GQRQ IL+LDEAT+A+D ++
Sbjct: 458 YAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 840 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 892
IQ + E K+ T L+IAHRL+TI D I++++ G ++E T +LL + G
Sbjct: 518 AIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRG 570
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 128/242 (52%), Gaps = 28/242 (11%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 101
+ RN F++ + + P L NINL IP G VA+VG +G GK++ I++++ + +
Sbjct: 342 VEFRNVTFTYPGR-DVPALRNINLKIPAGKTVALVGRSGSGKST-IASLITRFYDIDEGE 399
Query: 102 -------------AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 148
A +R VA V Q +FN TV +NI + + +R E+ + + +
Sbjct: 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSR-EQIEEAARMAY 458
Query: 149 DLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 205
+D + G T IGE GV +SGGQ+QR+++ARA+ +S + I D+ SALD
Sbjct: 459 AMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES--- 515
Query: 206 VFDRCIRGEL----SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQ 261
+R I+ L +T +++ ++L + + D I++V +G++ E GT DL + ++
Sbjct: 516 --ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYA 573
Query: 262 KL 263
+L
Sbjct: 574 QL 575
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 130 bits (327), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 137/266 (51%), Gaps = 12/266 (4%)
Query: 628 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 687
EN + ++ +LP PL + R I+FE+V Y + L +S
Sbjct: 26 ENMFDLLKEETEVKDLPGAGPLRFQKGR----------IEFENVHFSY-ADGRETLQDVS 74
Query: 688 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 747
FT+ P + +VG +GAGKS++L LFR ++ G I IDG DI++ LR +G++P
Sbjct: 75 FTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVP 134
Query: 748 QSPVLFSGTVRFNLDPFSEHSDADLWEAL-ERAHLKDAIRRNSLGLDAQVSEAGENFSVG 806
Q VLF+ T+ N+ + D EA + A + DAI G QV E G S G
Sbjct: 135 QDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGG 194
Query: 807 QRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 866
++Q I++LDEAT+A+D + IQ ++ + + T +++AHRL+T+++
Sbjct: 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254
Query: 867 CDRILLLDSGRVLEYDTPEELLSNEG 892
D+IL++ G ++E E LLS G
Sbjct: 255 ADQILVIKDGCIVERGRHEALLSRGG 280
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 138/285 (48%), Gaps = 30/285 (10%)
Query: 13 VSLKRMEEFLLAEEKIL-LPNP-PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVG 70
+ ++ M + L E ++ LP PL I N +FS+ R TL +++ + G
Sbjct: 23 IDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG--RETLQDVSFTVMPG 80
Query: 71 SLVAIVGGTGEGKTSLISAML--------------GELPPVSDASAVIRGTVAYVPQVSW 116
+A+VG +G GK++++ + ++ V+ AS +R + VPQ +
Sbjct: 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQAS--LRSHIGVVPQDTV 138
Query: 117 IFNATVRDNILFGSAFEPA-RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 175
+FN T+ DNI +G E A + + P G T++GERG+ +SGG+KQR
Sbjct: 139 LFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQR 198
Query: 176 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL----SGKTRVLVTNQLHFLS 231
V++AR + + + D+ SALD +R I+ L + +T ++V ++L +
Sbjct: 199 VAIARTILKAPGIILLDEATSALDTS-----NERAIQASLAKVCANRTTIVVAHRLSTVV 253
Query: 232 QVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE 276
D+I+++ +G + E G E L + G ++ + + EE E+
Sbjct: 254 NADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQEETSED 298
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 131/238 (55%), Gaps = 5/238 (2%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 782
IDG D+A LR+ +G++ Q VL + ++ N+ +P L AH
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 119
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ 842
D I G + V E G S GQRQ KIL+ DEAT+A+D ++ +I
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 843 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 900
+ + + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 118/229 (51%), Gaps = 23/229 (10%)
Query: 42 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
I+ RN F + K + P +L NINL I G ++ IVG +G GK++L + P +
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 101 SAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPA-RYEKAIDVTSLQ 147
+ +R V V Q + + N ++ DNI S P EK I L
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI---SLANPGMSVEKVIYAAKLA 116
Query: 148 --HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 204
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD +
Sbjct: 117 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESE 175
Query: 205 QVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
V R + G+T +++ ++L + DRII++ +G + E+G ++L
Sbjct: 176 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 224
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 131/238 (55%), Gaps = 5/238 (2%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 782
IDG D+A LR+ +G++ Q VL + ++ N+ +P L AH
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 125
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ 842
D I G + V E G S GQRQ KIL+ DEAT+A+D ++ +I
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 843 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 900
+ + + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 118/229 (51%), Gaps = 23/229 (10%)
Query: 42 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
I+ RN F + K + P +L NINL I G ++ IVG +G GK++L + P +
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 101 SAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPA-RYEKAIDVTSLQ 147
+ +R V V Q + + N ++ DNI S P EK I L
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI---SLANPGMSVEKVIYAAKLA 122
Query: 148 --HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 204
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD +
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESE 181
Query: 205 QVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
V R + G+T +++ ++L + DRII++ +G + E+G ++L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 230
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 131/238 (55%), Gaps = 5/238 (2%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G++L
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 782
IDG D+A LR+ +G++ Q VL + ++ N+ +P L AH
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 121
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ 842
D I G + V E G S GQRQ KIL+ DEAT+A+D ++ +I
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 843 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 900
+ + + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 239
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 118/229 (51%), Gaps = 23/229 (10%)
Query: 42 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
I+ RN F + K + P +L NINL I G ++ IVG +G GK++L + P +
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 61
Query: 101 SAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPA-RYEKAIDVTSLQ 147
+ +R V V Q + + N ++ DNI S P EK I L
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI---SLANPGMSVEKVIYAAKLA 118
Query: 148 --HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 204
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD +
Sbjct: 119 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESE 177
Query: 205 QVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
V R + G+T +++ ++L + DRII++ +G + E+G ++L
Sbjct: 178 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 226
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 129 bits (325), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 130/238 (54%), Gaps = 5/238 (2%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I F ++ RY+P+ P +L ++ +I + +GIVGR G+GKS++ + R E G++L
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 782
IDG D+A LR+ +G++ Q VL + ++ N+ +P L AH
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 121
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ 842
D I G + V E G S GQRQ KIL+ DEAT+A+D ++ +I
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 843 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 900
+ + + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 239
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 117/229 (51%), Gaps = 23/229 (10%)
Query: 42 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
I+ RN F + K + P +L NINL I G ++ IVG G GK++L + P +
Sbjct: 4 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQ 61
Query: 101 SAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPA-RYEKAIDVTSLQ 147
+ +R V V Q + + N ++ DNI S P EK I L
Sbjct: 62 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI---SLANPGMSVEKVIYAAKLA 118
Query: 148 --HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 204
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD +
Sbjct: 119 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESE 177
Query: 205 QVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
V R + G+T +++ ++L + DRII++ +G + E+G ++L
Sbjct: 178 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 226
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 6/243 (2%)
Query: 665 SIKFEDVVLRYRPELPP-VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
+I+F DV Y + L ++F IP +VG TG+GKS++ L+R + E G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GD 75
Query: 724 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN-LDPFSEHSDADLWEALERAHLK 782
I I G ++ K+ +R I+GI+PQ +LF+ T+++N L + +D ++ +A + A L
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLY 135
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ 842
D I D V G S G+RQ KI++ DEAT+++D +T+ L Q
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 843 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM--VQ 900
K + + K+ T++IIAHRL+TI + I+LL+ G+++E T ++LL G +++M +Q
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNG-EYAEMWNMQ 254
Query: 901 STG 903
S G
Sbjct: 255 SGG 257
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 18/225 (8%)
Query: 49 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------ 102
FS+ + TL +IN IP G+ A+VG TG GK+++ + D
Sbjct: 25 FSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVN 84
Query: 103 -----VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS---LQHDLDLLP 154
IR + VPQ + +FN T++ NIL+G A E+ I T L ++ LP
Sbjct: 85 KYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL--DATDEEVIKATKSAQLYDFIEALP 142
Query: 155 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 214
T +G +G+ +SGG++QR+++AR + + + IFD+ S+LD+ +F + +
Sbjct: 143 KKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYLFQKAVEDL 201
Query: 215 LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN-NGE 258
+T +++ ++L +S + IIL+++G + E+GT +DL NGE
Sbjct: 202 RKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGE 246
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 131/238 (55%), Gaps = 5/238 (2%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 782
IDG D+A LR+ +G++ Q VL + ++ N+ +P L AH
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 125
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ 842
D I G + V E G S GQRQ KIL+ D+AT+A+D ++ +I
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 843 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 900
+ + + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 117/229 (51%), Gaps = 23/229 (10%)
Query: 42 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
I+ RN F + K + P +L NINL I G ++ IVG +G GK++L + P +
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 101 SAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPA-RYEKAIDVTSLQ 147
+ +R V V Q + + N ++ DNI S P EK I L
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI---SLANPGMSVEKVIYAAKLA 122
Query: 148 --HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 204
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD SALD +
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALD-YESE 181
Query: 205 QVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
V R + G+T +++ ++L + DRII++ +G + E+G ++L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 230
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 126 bits (316), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 130/238 (54%), Gaps = 5/238 (2%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 782
IDG D+A LR+ +G++ Q VL + ++ N+ +P L AH
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 119
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ 842
D I G + V E G S GQRQ KIL+ DEAT+A+D ++ +I
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 843 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 900
+ + + K T++IIA RL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 117/229 (51%), Gaps = 23/229 (10%)
Query: 42 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
I+ RN F + K + P +L NINL I G ++ IVG +G GK++L + P +
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 101 SAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPA-RYEKAIDVTSLQ 147
+ +R V V Q + + N ++ DNI S P EK I L
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI---SLANPGMSVEKVIYAAKLA 116
Query: 148 --HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 204
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD +
Sbjct: 117 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESE 175
Query: 205 QVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
V R + G+T +++ +L + DRII++ +G + E+G ++L
Sbjct: 176 HVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKEL 224
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 126 bits (316), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 130/238 (54%), Gaps = 5/238 (2%)
Query: 666 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 725
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 726 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 782
IDG D+A LR+ +G++ Q VL + ++ N+ +P L AH
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-- 125
Query: 783 DAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ 842
D I G + V E G S GQRQ KIL+ DEAT+A+D ++ +I
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 843 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 900
+ + + K T++IIA RL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 117/229 (51%), Gaps = 23/229 (10%)
Query: 42 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
I+ RN F + K + P +L NINL I G ++ IVG +G GK++L + P +
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 101 SAV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPA-RYEKAIDVTSLQ 147
+ +R V V Q + + N ++ DNI S P EK I L
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI---SLANPGMSVEKVIYAAKLA 122
Query: 148 --HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 204
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD +
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD-YESE 181
Query: 205 QVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
V R + G+T +++ +L + DRII++ +G + E+G ++L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKEL 230
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 122 bits (306), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 112/210 (53%), Gaps = 2/210 (0%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
+L +SF P+ + G +G GKS++ + L R + G I IDG I L + R
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 742 ILGIIPQSPVLFSGTVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEA 799
+G + Q + +GT+R NL E ++D DLW+ L+ A + + L+ +V E
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER 136
Query: 800 GENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAH 859
G S GQRQ KIL+LDEATA++D +++++QK + K T L+IAH
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAH 196
Query: 860 RLNTIIDCDRILLLDSGRVLEYDTPEELLS 889
RL+TI+D D+I ++ G++ EL++
Sbjct: 197 RLSTIVDADKIYFIEKGQITGSGKHNELVA 226
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 120/237 (50%), Gaps = 17/237 (7%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM-------LGEL 94
+S R+ F++D + L +I+ + S++A G +G GK+++ S + GE+
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 95 P----PVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQ 147
P+ + S R + +V Q S I T+R+N+ +G + + +D+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 148 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 207
++ +P TE+GERGV ISGGQ+QR+++ARA N + + D+ ++LD+ +
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSE-SESMV 178
Query: 208 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 264
+ + + G+T +++ ++L + D+I + +G + G +L L+ K +
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 119/247 (48%), Gaps = 16/247 (6%)
Query: 664 GSIKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
G +KF+DV Y P P VL GL+FT+ P +VG G+GKS++ L + +
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 722 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL------DPFSEHSDADLWEA 775
G++L+DG + ++ L + + Q P+LF + R N+ P E A E+
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 776 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDV 835
AH D I G D +V E G S GQRQ ++L+LD+AT+A+D
Sbjct: 134 --GAH--DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDA 189
Query: 836 RTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 893
+Q+ + E E+ S T+L+I H+L+ IL L G V E T +L+ G
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLM-ERGG 248
Query: 894 SFSKMVQ 900
+ MV+
Sbjct: 249 CYRSMVE 255
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 23/236 (9%)
Query: 49 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-------------P 95
F++ + L + + G + A+VG G GK++ ++A+L L P
Sbjct: 24 FAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST-VAALLQNLYQPTGGKVLLDGEP 82
Query: 96 PVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE-KAIDVTSLQHD-LDLL 153
V + VA V Q +F + R+NI +G P E A+ + S HD +
Sbjct: 83 LVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGF 142
Query: 154 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA----HVGRQVFDR 209
P G TE+GE G +SGGQ+Q V++ARA+ + I D SALDA V R +++
Sbjct: 143 PQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYES 202
Query: 210 CIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 265
E + +T +L+T+QL + I+ + EG V E+GT L G ++ ++E
Sbjct: 203 P---EWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVE 255
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 118/247 (47%), Gaps = 16/247 (6%)
Query: 664 GSIKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
G +KF+DV Y P P VL GL+FT+ P +VG G+GKS++ L + +
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 722 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL------DPFSEHSDADLWEA 775
G++L+DG + ++ L + + Q P+LF + R N+ P E A E+
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 776 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDV 835
AH D I G D +V E G +VGQRQ ++L+LD AT+A+D
Sbjct: 134 --GAH--DFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 836 RTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 893
+Q+ + E E+ S T+L+I +L+ IL L G V E T +L+ G
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM-ERGG 248
Query: 894 SFSKMVQ 900
+ MV+
Sbjct: 249 CYRSMVE 255
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 112/236 (47%), Gaps = 23/236 (9%)
Query: 49 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-------------P 95
F++ + L + + G + A+VG G GK++ ++A+L L P
Sbjct: 24 FAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST-VAALLQNLYQPTGGKVLLDGEP 82
Query: 96 PVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE-KAIDVTSLQHD-LDLL 153
V + VA V Q +F + R+NI +G P E A+ + S HD +
Sbjct: 83 LVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGF 142
Query: 154 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA----HVGRQVFDR 209
P G TE+GE G ++ GQ+Q V++ARA+ + I D+ SALDA V R +++
Sbjct: 143 PQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYES 202
Query: 210 CIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 265
E + +T +L+T QL + I+ + EG V E+GT L G ++ ++E
Sbjct: 203 P---EWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVE 255
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 117/247 (47%), Gaps = 16/247 (6%)
Query: 664 GSIKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 721
G +KF+DV Y P P VL GL+FT+ P +VG G+GKS++ L + +
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 722 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL------DPFSEHSDADLWEA 775
G++L+DG + ++ L + + Q P+LF + R N+ P E A E+
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 776 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDV 835
AH D I G D +V E G S GQRQ ++L+LD AT+A+D
Sbjct: 134 --GAH--DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 836 RTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 893
+Q+ + E E+ S T+L+I +L+ IL L G V E T +L+ G
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM-ERGG 248
Query: 894 SFSKMVQ 900
+ MV+
Sbjct: 249 CYRSMVE 255
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 23/236 (9%)
Query: 49 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-------------P 95
F++ + L + + G + A+VG G GK++ ++A+L L P
Sbjct: 24 FAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST-VAALLQNLYQPTGGKVLLDGEP 82
Query: 96 PVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE-KAIDVTSLQHD-LDLL 153
V + VA V Q +F + R+NI +G P E A+ + S HD +
Sbjct: 83 LVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGF 142
Query: 154 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA----HVGRQVFDR 209
P G TE+GE G +SGGQ+Q V++ARA+ + I D+ SALDA V R +++
Sbjct: 143 PQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYES 202
Query: 210 CIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 265
E + +T +L+T QL + I+ + EG V E+GT L G ++ ++E
Sbjct: 203 P---EWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVE 255
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 96.7 bits (239), Expect = 6e-20, Method: Composition-based stats.
Identities = 75/264 (28%), Positives = 131/264 (49%), Gaps = 20/264 (7%)
Query: 656 PPPGWPS----SGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 709
PP G + G ++F+DV Y RP++ VL GL+FT+ P + +VG G+GKS++
Sbjct: 1 PPSGLLTPLHLEGLVQFQDVSFAYPNRPDVL-VLQGLTFTLRPGEVTALVGPNGSGKSTV 59
Query: 710 LNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL------DP 763
L + + G++L+DG + ++ L + + + Q P +F +++ N+ P
Sbjct: 60 AALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKP 119
Query: 764 FSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKI 823
E A A ++ I G D +V EAG S GQRQ +
Sbjct: 120 TMEEITA----AAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCV 175
Query: 824 LVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 881
L+LD+AT+A+D + +++ + E E S ++L+I L+ + D IL L+ G + E
Sbjct: 176 LILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREG 235
Query: 882 DTPEELLSNEGSSFSKMVQSTGAA 905
T ++L+ +G ++ MVQ+ A
Sbjct: 236 GTHQQLMEKKGCYWA-MVQAPADA 258
Score = 86.7 bits (213), Expect = 6e-17, Method: Composition-based stats.
Identities = 72/248 (29%), Positives = 115/248 (46%), Gaps = 27/248 (10%)
Query: 49 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT- 107
F++ ++ + L + + G + A+VG G GK++ ++A+L L + ++ G
Sbjct: 22 FAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKST-VAALLQNLYQPTGGQLLLDGKP 80
Query: 108 ------------VAYVPQVSWIFNATVRDNILFGSAFEPARYE-KAIDVTSLQHD-LDLL 153
VA V Q +F ++++NI +G +P E A V S H + L
Sbjct: 81 LPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGL 140
Query: 154 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 213
P G TE+ E G +SGGQ+Q V++ARA+ V I DD SALDA+ QV
Sbjct: 141 PQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYES 200
Query: 214 -ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEE 272
E ++ +L+T L + Q D I+ + G ++E GT Q+LME G
Sbjct: 201 PERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGT----------HQQLMEKKGCYWA 250
Query: 273 YVEEKEDG 280
V+ D
Sbjct: 251 MVQAPADA 258
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 109/224 (48%), Gaps = 34/224 (15%)
Query: 59 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGTVAYVPQ---V 114
++ ++ I G +V ++G +G GKT+++ + G E P D + PQ V
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89
Query: 115 SWIF-------NATVRDNILFGSAFE-------PARYEKAIDVTSLQHDLDLLPGGDVTE 160
+F + TV DN+ FG + AR + + L+ + P
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH----- 144
Query: 161 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV--FDRCIRGELSGK 218
+SGGQ+QRV++ARA+ V +FD+P +A+D + R++ F R + E+ G
Sbjct: 145 ------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM-GV 197
Query: 219 TRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELF 260
T V VT +Q L DR++++HEG V++ GT E++ G LF
Sbjct: 198 TSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 103/216 (47%), Gaps = 8/216 (3%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 742
+ G+SF I + VG++G +G+GK+++L + + +G + I G + L ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTD--LPPQKRN 88
Query: 743 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 802
+G++ Q+ LF ++ F + ++ A +++ +R + L++ +
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD-ARVRELLR--FMRLESYANRFPHE 145
Query: 803 FSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHR 860
S GQ+Q ++L+ DE AA+D + ++ +R+ + T + + H
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205
Query: 861 LNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 895
++ DR+L+L G V ++ TPEE+ G+ F
Sbjct: 206 QEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 106/216 (49%), Gaps = 11/216 (5%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG--FDIAKFGLMDLR 740
L G++ I + I+G G GKS++ I++ GRIL D D ++ G+M LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 741 KILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 798
+ +GI+ Q P LFS +V ++ F + L E R + +A++R G++ +
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVS-FGA-VNMKLPEDEIRKRVDNALKRT--GIEHLKDK 139
Query: 799 AGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLI 856
S GQ++ K+L+LDE TA +D + I K + E K T++I
Sbjct: 140 PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIII 199
Query: 857 IAHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNE 891
H ++ + + CD + ++ GRV+ P+E+ + +
Sbjct: 200 ATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 235
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 113/254 (44%), Gaps = 40/254 (15%)
Query: 59 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAV---------I 104
L IN++I G + AI+GG G GK++L G L P S D + +
Sbjct: 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKL 82
Query: 105 RGTVAYVPQ--VSWIFNATVRDNILFGSAFEP-------ARYEKAIDVTSLQHDLDLLPG 155
R ++ V Q + +F+A+V ++ FG+ R + A+ T ++H D
Sbjct: 83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD---- 138
Query: 156 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 215
+ +S GQK+RV++A + V I D+P + LD ++ + +
Sbjct: 139 -------KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQK 191
Query: 216 S-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGELFQKL---MENAGKM 270
G T ++ T+ + + D + ++ EG V +G +++ E+ +K+ + G +
Sbjct: 192 ELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHL 251
Query: 271 EEYVEEKEDGETVD 284
E ++EK DG D
Sbjct: 252 MEILKEK-DGFVFD 264
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 20/208 (9%)
Query: 59 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----DASA----VIRGTVAY 110
L ++N + G + +VG G GKT+L+ + G L D S ++R V Y
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLDGSPADPFLLRKNVGY 85
Query: 111 VPQ--VSWIFNATVRDNILFG---SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 165
V Q S I ATV +++ F + + K I L L D
Sbjct: 86 VFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADP------- 138
Query: 166 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 225
+N+SGGQKQR+++A + ++ D+P+S LD R++F + GK +LVT+
Sbjct: 139 LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTH 198
Query: 226 QLHFLSQVDRIILVHEGMVKEEGTFEDL 253
+L +L +D I+ + G + G++E+
Sbjct: 199 ELEYLDDMDFILHISNGTIDFCGSWEEF 226
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 27/205 (13%)
Query: 698 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV--LFSG 755
+VG+ G+GK+++L L ++ G I +DG F LRK +G + Q+P +
Sbjct: 42 VVGKNGSGKTTLLKILAGLLA-AAGEIFLDGSPADPFL---LRKNVGYVFQNPSSQIIGA 97
Query: 756 TVR----FNLDPFSEHSDADLWEALERAHLKDAIRR--NSLGLDAQVSEAGENFSVGQRQ 809
TV F+L+ L+ + ++ I++ +GL + N S GQ+Q
Sbjct: 98 TVEEDVAFSLEIM----------GLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQ 147
Query: 810 XXXXXXXXXXXXKILVLDEATAAVD---VRTDALIQKTIREEFKSCTMLIIAHRLNTIID 866
+ L LDE + +D R + ++++ E K ++++ H L + D
Sbjct: 148 RLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG--IILVTHELEYLDD 205
Query: 867 CDRILLLDSGRVLEYDTPEELLSNE 891
D IL + +G + + EE + E
Sbjct: 206 MDFILHISNGTIDFCGSWEEFVERE 230
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 96/210 (45%), Gaps = 35/210 (16%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP----QVSWI 117
NINL I G +A++G +G GK++L+ + G P S V +P V +
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV 80
Query: 118 F-------NATVRDNILFGSAFEPARYE----KAIDVTSLQHDLDLLPGGDVTEIGERGV 166
F + TV NI F A E K +V + H LL
Sbjct: 81 FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLL--------NRYPW 132
Query: 167 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------GKTR 220
+SGGQ+QRV++ARA+ +V + D+PLS LDA + +V R EL G T
Sbjct: 133 QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEV-----RAELKRLQKELGITT 187
Query: 221 VLVT-NQLHFLSQVDRIILVHEGMVKEEGT 249
V VT +Q L+ DRI ++ EG + + GT
Sbjct: 188 VYVTHDQAEALAMADRIAVIREGEILQVGT 217
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 107/240 (44%), Gaps = 22/240 (9%)
Query: 665 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 724
IK E++V ++ L+ ++ I + + ++G +G+GKS++L T+ I + G+I
Sbjct: 3 EIKLENIVKKFGNFT--ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 725 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA 784
D D+ + D + +G++ Q+ L+ + F +L +A R +
Sbjct: 61 YFDEKDVTELPPKD--RNVGLVFQNWALYPHMTVYKNIAFP----LELRKA-PREEIDKK 113
Query: 785 IRR--NSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ 842
+R L +D ++ S GQ+Q ++L+LDE + + DAL++
Sbjct: 114 VREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNL----DALLR 169
Query: 843 KTIREEFK------SCTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 895
+R E K T + + H + + DRI ++ G +L+ TP+E+ F
Sbjct: 170 LEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKF 229
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 53/218 (24%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG-----------------ELPPVSDASAVI 104
+INLDI G V VG +G GK++L+ + G + PP ++
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80
Query: 105 RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE-------KAIDVTSLQHDLDLLPGGD 157
+ A P +S V +N+ FG A+ E + +V L H LD P
Sbjct: 81 FQSYALYPHLS------VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 133
Query: 158 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS- 216
+SGGQ+QRV++ R + + VF+ D+PLS LDA + Q +R E+S
Sbjct: 134 ----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ-----MRIEISR 178
Query: 217 -----GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEG 248
G+T + VT +Q+ ++ D+I+++ G V + G
Sbjct: 179 LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 803 FSVGQRQXXXXXXXXXXXXKILVLDEATAAVD--VRTDALIQKTIREEFKSCTMLIIAH- 859
S GQRQ + +LDE + +D +R I+ + + TM+ + H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 860 RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 895
++ + D+I++LD+GRV + P EL F
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 229
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 53/218 (24%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG-----------------ELPPVSDASAVI 104
+INLDI G V VG +G GK++L+ + G + PP ++
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80
Query: 105 RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE-------KAIDVTSLQHDLDLLPGGD 157
+ A P +S V +N+ FG A+ E + +V L H LD P
Sbjct: 81 FQSYALYPHLS------VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 133
Query: 158 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS- 216
+SGGQ+QRV++ R + + VF+ D+PLS LDA + Q +R E+S
Sbjct: 134 ----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ-----MRIEISR 178
Query: 217 -----GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEG 248
G+T + VT +Q+ ++ D+I+++ G V + G
Sbjct: 179 LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 803 FSVGQRQXXXXXXXXXXXXKILVLDEATAAVD--VRTDALIQKTIREEFKSCTMLIIAH- 859
S GQRQ + +LDE + +D +R I+ + + TM+ + H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 860 RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 895
++ + D+I++LD+GRV + P EL F
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 229
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 53/218 (24%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG-----------------ELPPVSDASAVI 104
+INLDI G V VG +G GK++L+ + G + PP ++
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80
Query: 105 RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE-------KAIDVTSLQHDLDLLPGGD 157
+ A P +S V +N+ FG A+ E + +V L H LD P
Sbjct: 81 FQSYALYPHLS------VAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 133
Query: 158 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS- 216
+SGGQ+QRV++ R + + VF+ D PLS LDA + Q +R E+S
Sbjct: 134 ----------LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQ-----MRIEISR 178
Query: 217 -----GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEG 248
G+T + VT +Q+ ++ D+I+++ G V + G
Sbjct: 179 LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 803 FSVGQRQXXXXXXXXXXXXKILVLDEATAAVD--VRTDALIQKTIREEFKSCTMLIIAH- 859
S GQRQ + +LD+ + +D +R I+ + + TM+ + H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 860 RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 895
++ + D+I++LD+GRV + P EL F
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 229
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 155 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 214
G D G+ V++SGGQ+QRVS+ARA+ DV +FD+P SALD + +V +
Sbjct: 141 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA 200
Query: 215 LSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 256
GKT V+VT+++ F V +I +H+G ++EEG E + N
Sbjct: 201 EEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 802 NFSVGQRQXXXXXXXXXXXXKILVLDEATAAVD---VRTDALIQKTIREEFKSCTMLIIA 858
+ S GQ+Q +L+ DE T+A+D V I + + EE K TM+++
Sbjct: 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGK--TMVVVT 210
Query: 859 HRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGS 893
H + ++ L G++ E PE++ N S
Sbjct: 211 HEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQS 246
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 111/233 (47%), Gaps = 22/233 (9%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDL 739
L+ +S +P G++G +GAGKS+++ + + G +L+DG ++ L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 740 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR------NSLGLD 793
R+ +G+I Q L S F + L L+ KD ++R + +GL
Sbjct: 81 RRQIGMIFQHFNLLSSRTVF--------GNVALPLELDNTP-KDEVKRRVTELLSLVGLG 131
Query: 794 AQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFK--S 851
+ N S GQ+Q K+L+ DEAT+A+D T I + +++ +
Sbjct: 132 DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG 191
Query: 852 CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS-KMVQST 902
T+L+I H ++ + CD + ++ +G ++E DT E+ S+ + + K +QST
Sbjct: 192 LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQST 244
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 120/237 (50%), Gaps = 27/237 (11%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELPPVSDASAVIRGTVAYVPQVSWIFNA 120
N++L +P G + ++G +G GK++LI + L E P ++ S ++ G S + A
Sbjct: 23 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELTTLSESELTKA 80
Query: 121 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDV----TEI------GERG----V 166
+ ++F F +L +LD P +V TE+ G++
Sbjct: 81 RRQIGMIF-QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS 139
Query: 167 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVT 224
N+SGGQKQRV++ARA+ SN V + D+ SALD R + + + I L G T +L+T
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLIT 198
Query: 225 NQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGE--LFQKLMENAGKM---EEYVE 275
+++ + ++ D + ++ G + E+ T ++ ++ + L QK +++ + E+Y E
Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQE 255
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 112/234 (47%), Gaps = 24/234 (10%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDL 739
L+ +S +P G++G +GAGKS+++ + + G +L+DG ++ L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 740 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL-KDAIRR------NSLGL 792
R+ +G+I Q L S F ++ LE + KD ++R + +GL
Sbjct: 104 RRQIGMIFQHFNLLSSRTVF----------GNVALPLELDNTPKDEVKRRVTELLSLVGL 153
Query: 793 DAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFK-- 850
+ N S GQ+Q K+L+ D+AT+A+D T I + +++ +
Sbjct: 154 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213
Query: 851 SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS-KMVQST 902
T+L+I H ++ + CD + ++ +G ++E DT E+ S+ + + K +QST
Sbjct: 214 GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQST 267
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 119/237 (50%), Gaps = 27/237 (11%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELPPVSDASAVIRGTVAYVPQVSWIFNA 120
N++L +P G + ++G +G GK++LI + L E P ++ S ++ G S + A
Sbjct: 46 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELTTLSESELTKA 103
Query: 121 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDV----TEI------GERG----V 166
+ ++F F +L +LD P +V TE+ G++
Sbjct: 104 RRQIGMIF-QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS 162
Query: 167 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVT 224
N+SGGQKQRV++ARA+ SN V + D SALD R + + + I L G T +L+T
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLIT 221
Query: 225 NQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGE--LFQKLMENAGKM---EEYVE 275
+++ + ++ D + ++ G + E+ T ++ ++ + L QK +++ + E+Y E
Sbjct: 222 HEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQE 278
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 30/212 (14%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------- 104
L N+NL+I G V+I+G +G GK+++++ ++G L ++ I
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 105 --RGTVAYV-PQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
R + +V Q + I T +N+ F +Y A+ + + L + E+
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIF---KYRGAM--SGEERRKRALECLKMAEL 134
Query: 162 GERGVN-----ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GEL 215
ER N +SGGQ+QRV++ARA+ +N + + D P ALD+ G ++ + E
Sbjct: 135 EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE 194
Query: 216 SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 247
GKT V+VT+ ++ +RII + +G V+ E
Sbjct: 195 DGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 99/239 (41%), Gaps = 43/239 (17%)
Query: 666 IKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
IK ++V Y+ E+ L ++ I + V I+G +G+GKS+MLN + + + G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 724 ILIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE-- 777
+ ID +L KI +G + Q +FNL P L ALE
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQ---------QFNLIP--------LLTALENV 104
Query: 778 --------RAHLKDAIRRNSLGLDAQVSEAGENF--------SVGQRQXXXXXXXXXXXX 821
R + RR +++E E F S GQ+Q
Sbjct: 105 ELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNP 164
Query: 822 KILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 878
I++ D+ T A+D +T I + +++ E T++++ H +N +RI+ L G V
Sbjct: 165 PIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 66.2 bits (160), Expect = 8e-11, Method: Composition-based stats.
Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 10/163 (6%)
Query: 41 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
A+S+ N F + +AE +N D+ G ++A++G G GK++L+ +LG P+
Sbjct: 4 ALSVENLGFYY--QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 101 SAVIRGTVAYVPQV-SWIFNATVRDNILFGSAFEPARYEK--AIDVTSLQHDLDLLPGGD 157
V + ++ +VPQ S F +V D +L G + + K + D LD L +
Sbjct: 62 IEVYQ-SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYL---N 117
Query: 158 VTEIGERG-VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
+T + +R ++SGGQ+Q + +ARA+ S + + D+P SALD
Sbjct: 118 LTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 44/217 (20%), Positives = 93/217 (42%), Gaps = 32/217 (14%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745
L+F + D + ++G+ G GKS++L+ L I +G+I ++ + +G
Sbjct: 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQSIGF 70
Query: 746 IPQ---SPVLFS------GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 796
+PQ SP +S +++ F++ D A++ + L L
Sbjct: 71 VPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQAL--------DYLNLTHLA 122
Query: 797 SEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 856
+ S GQRQ K+++LDE T+A+D+ ++ + + +S M +
Sbjct: 123 KREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTV 182
Query: 857 I--AHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 891
+ H+ N ++ LL + + ++ +L++E
Sbjct: 183 VFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILTSE 219
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 110/234 (47%), Gaps = 24/234 (10%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDL 739
L+ +S +P G++G +GAGKS+++ + + G +L+DG ++ L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 740 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL-KDAIRR------NSLGL 792
R+ +G I Q L S F ++ LE + KD ++R + +GL
Sbjct: 104 RRQIGXIFQHFNLLSSRTVF----------GNVALPLELDNTPKDEVKRRVTELLSLVGL 153
Query: 793 DAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFK-- 850
+ N S GQ+Q K+L+ D+AT+A+D T I + +++ +
Sbjct: 154 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213
Query: 851 SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS-KMVQST 902
T+L+I H + + CD + ++ +G ++E DT E+ S+ + + K +QST
Sbjct: 214 GLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQST 267
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 27/239 (11%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELPPVSDASAVIRGTVAYVPQVSWIF 118
L N++L +P G + ++G +G GK++LI + L E P ++ S ++ G S +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELTTLSESELT 101
Query: 119 NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDV----TEI------GERG--- 165
A + +F F +L +LD P +V TE+ G++
Sbjct: 102 KARRQIGXIF-QHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY 160
Query: 166 -VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVL 222
N+SGGQKQRV++ARA+ SN V + D SALD R + + + I L G T +L
Sbjct: 161 PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILL 219
Query: 223 VTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGE--LFQKLMENAGKM---EEYVE 275
+T++ + ++ D + ++ G + E+ T ++ ++ + L QK +++ + E+Y E
Sbjct: 220 ITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQE 278
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 24/220 (10%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--FGLMDL 739
VL G++ I + V ++G +G+GKS+ L L + + + G I+IDG ++ L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 740 RKILGIIPQSPVLFSGTVRFN---LDPFS------EHSDADLWEALERAHLKDAIRRNSL 790
R+ +G++ Q LF N L P E ++A E L++ LKD
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD------- 151
Query: 791 GLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIRE-EF 849
+ ++ S GQ Q KI++ DE T+A+D + +++
Sbjct: 152 ----KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207
Query: 850 KSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELL 888
+ TM+++ H + + DR+L +D G ++E PE+L
Sbjct: 208 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 29/216 (13%)
Query: 59 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT----------- 107
L IN+ I G +V ++G +G GK++ + L L + +I G
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRC-LNLLEDFDEGEIIIDGINLKAKDTNLNK 97
Query: 108 ----VAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 162
V V Q +F + TV +NI P + K + ++LL D +
Sbjct: 98 VREEVGMVFQRFNLFPHMTVLNNI----TLAPMKVRKWPREKAEAKAMELL---DKVGLK 150
Query: 163 ERGV----NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 218
++ ++SGGQ QRV++ARA+ + +FD+P SALD + +V + G
Sbjct: 151 DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGM 210
Query: 219 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 253
T V+VT+++ F +V DR++ + G + EEG EDL
Sbjct: 211 TMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 24/220 (10%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--FGLMDL 739
VL G++ I + V ++G +G+GKS+ L L + + + G I+IDG ++ L +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 740 RKILGIIPQSPVLFSGTVRFN---LDPFS------EHSDADLWEALERAHLKDAIRRNSL 790
R+ +G++ Q LF N L P E ++A E L++ LKD
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD------- 130
Query: 791 GLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIRE-EF 849
+ ++ S GQ Q KI++ DE T+A+D + +++
Sbjct: 131 ----KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 186
Query: 850 KSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELL 888
+ TM+++ H + + DR+L +D G ++E PE+L
Sbjct: 187 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 226
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 29/216 (13%)
Query: 59 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT----------- 107
L IN+ I G +V ++G +G GK++ + L L + +I G
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRC-LNLLEDFDEGEIIIDGINLKAKDTNLNK 76
Query: 108 ----VAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 162
V V Q +F + TV +NI P + K + ++LL D +
Sbjct: 77 VREEVGMVFQRFNLFPHMTVLNNITLA----PMKVRKWPREKAEAKAMELL---DKVGLK 129
Query: 163 ERGV----NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 218
++ ++SGGQ QRV++ARA+ + +FD+P SALD + +V + G
Sbjct: 130 DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGM 189
Query: 219 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 253
T V+VT+++ F +V DR++ + G + EEG EDL
Sbjct: 190 TMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 225
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 30/212 (14%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------- 104
L N+NL+I G V+I+G +G GK+++++ ++G L ++ I
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 105 --RGTVAYV-PQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
R + +V Q + I T +N+ F +Y A+ + + L + E+
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIF---KYRGAM--SGEERRKRALECLKMAEL 134
Query: 162 GERGVN-----ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GEL 215
ER N +SGGQ+QRV++ARA+ +N + + D P ALD+ G ++ + E
Sbjct: 135 EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE 194
Query: 216 SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 247
GKT V+VT+ ++ +RII + +G V+ E
Sbjct: 195 DGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 99/239 (41%), Gaps = 43/239 (17%)
Query: 666 IKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
+K ++V Y+ E+ L ++ I + V I+G +G+GKS+MLN + + + G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 724 ILIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE-- 777
+ ID +L KI +G + Q +FNL P L ALE
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQ---------QFNLIP--------LLTALENV 104
Query: 778 --------RAHLKDAIRRNSLGLDAQVSEAGENF--------SVGQRQXXXXXXXXXXXX 821
R + RR +++E E F S GQ+Q
Sbjct: 105 ELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNP 164
Query: 822 KILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 878
I++ D+ T A+D +T I + +++ E T++++ H +N +RI+ L G V
Sbjct: 165 PIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 42/236 (17%)
Query: 59 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVIRGT 107
+L N++L + G I+G TG GKT + + G P V+D S +
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE-KHD 73
Query: 108 VAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTS----LQHDLDLLPGGDVTEIG 162
+A+V Q +F + V+ N+ FG + + K + T+ ++H LD P
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-------- 125
Query: 163 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL 222
+ +SGG++QRV++ARA+ +N + + D+PLSALD Q R + L K ++
Sbjct: 126 ---LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT--QENAREMLSVLHKKNKLT 180
Query: 223 VTNQLHFLSQ----VDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYV 274
V + H ++ DRI +V +G + + G E E+F+K +E G++ +V
Sbjct: 181 VLHITHDQTEARIMADRIAVVMDGKLIQVGKPE------EIFEKPVE--GRVASFV 228
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 27/217 (12%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 742
L LS + + I+G TGAGK+ L + + GRIL+DG D+ L +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD--LSPEKHD 73
Query: 743 LGIIPQSPVLFSG-TVRFNLD---PFSEHSDA----DLWEALERAHLKDAIRRNSLGLDA 794
+ + Q+ LF V+ NL+ + D D L+ HL D RN L L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD---RNPLTL-- 128
Query: 795 QVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRT--DALIQKTIREEFKSC 852
S G++Q KIL+LDE +A+D RT +A ++ +
Sbjct: 129 ---------SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179
Query: 853 TMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELL 888
T+L I H + I DRI ++ G++++ PEE+
Sbjct: 180 TVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 111/231 (48%), Gaps = 18/231 (7%)
Query: 664 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
G++ +D LR R +L G+SF I + G++G GAGK++ L + +++ G
Sbjct: 14 GAVVVKD--LRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 71
Query: 724 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGT-----VRFNLDPFSEHSDADLWEALER 778
+ + G ++ + ++RK++ +P+ + +RF + F S +++ E +ER
Sbjct: 72 VTVFGKNVVEEP-HEVRKLISYLPEEAGAYRNMQGIEYLRF-VAGFYASSSSEIEEMVER 129
Query: 779 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTD 838
A GL ++ + +S G + ++ +LDE T+ +DV
Sbjct: 130 AT-------EIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 182
Query: 839 ALIQKTIREEFK-SCTMLIIAHR-LNTIIDCDRILLLDSGRVLEYDTPEEL 887
++K +++ + T+L+ +H L CDRI L+ +G ++E T EEL
Sbjct: 183 REVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 104/238 (43%), Gaps = 39/238 (16%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------- 103
++ L I+ +I G + ++G G GKT+ + + + P S V
Sbjct: 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE 85
Query: 104 IRGTVAYVPQVSWIF-NATVRDNILFGSAFEPAR-------YEKAIDVTSLQHDLDLLPG 155
+R ++Y+P+ + + N + + F + F + E+A ++ L
Sbjct: 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE------- 138
Query: 156 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 215
+I +R S G +++ +ARA+ N + I D+P S LD R+V +
Sbjct: 139 ----KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194
Query: 216 SGKTRVLVT--NQLHFLSQVDRIILVHEGMVKEEGTFEDLS------NNGELFQKLME 265
G T +LV+ N L DRI L+H G + E GT E+L N E+F+++++
Sbjct: 195 EGLT-ILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVK 251
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 31/221 (14%)
Query: 49 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---------D 99
F + E+ L N++L I G + + G TG GK++L+ + G + P S
Sbjct: 12 FHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK 71
Query: 100 ASAVIRGTVAYVPQV--SWIFNATVRDNILFG-SAFEPAR-----YEKAIDVTSLQHD-- 149
IR + Q F V D + F F P R +KA++ L D
Sbjct: 72 KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSF 131
Query: 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 209
D +P +SGG+K+RV++A + D+ I D+PL LD +
Sbjct: 132 KDRVP-----------FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRI 180
Query: 210 CIRGELSGKTRVLVTNQLH-FLSQVDRIILVHEGMVKEEGT 249
+ + GKT +L+++ + ++ VDR++++ +G +GT
Sbjct: 181 VEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 35/249 (14%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 742
L +S I + + + G TG+GKS++L + ++E G +L DG + ++R+
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79
Query: 743 LGIIPQSP--VLFS----GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 796
+GI Q P F+ V F + F D +K A+ L D+
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDP-------VPLVKKAMEFVGLDFDSFK 132
Query: 797 SEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDV--RTDALIQKTIREEFKSC-- 852
S G+++ IL+LDE +D +TD L I E++K+
Sbjct: 133 DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL---RIVEKWKTLGK 189
Query: 853 TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF--SKMVQSTGAANAQY 909
T+++I+H + T+I+ DR+++L+ G+ + T E L F SKM+
Sbjct: 190 TVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKML---------V 240
Query: 910 LRSLVLGGE 918
+R LVL GE
Sbjct: 241 MRRLVLKGE 249
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 31/221 (14%)
Query: 49 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---------D 99
F + E+ L N++L I G + + G TG GK++L+ + G + P S
Sbjct: 14 FHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK 73
Query: 100 ASAVIRGTVAYVPQV--SWIFNATVRDNILFG-SAFEPAR-----YEKAIDVTSLQHD-- 149
IR + Q F V D + F F P R +KA++ L D
Sbjct: 74 KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSF 133
Query: 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 209
D +P +SGG+K+RV++A + D+ I D+PL LD +
Sbjct: 134 KDRVP-----------FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRI 182
Query: 210 CIRGELSGKTRVLVTNQLH-FLSQVDRIILVHEGMVKEEGT 249
+ + GKT +L+++ + ++ VDR++++ +G +GT
Sbjct: 183 VEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 223
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 35/249 (14%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 742
L +S I + + + G TG+GKS++L + ++E G +L DG + ++R+
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 81
Query: 743 LGIIPQSP--VLFS----GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 796
+GI Q P F+ V F + F D +K A+ L D+
Sbjct: 82 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDP-------VPLVKKAMEFVGLDFDSFK 134
Query: 797 SEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDV--RTDALIQKTIREEFKSC-- 852
S G+++ IL+LDE +D +TD L I E++K+
Sbjct: 135 DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL---RIVEKWKTLGK 191
Query: 853 TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF--SKMVQSTGAANAQY 909
T+++I+H + T+I+ DR+++L+ G+ + T E L F SKM+
Sbjct: 192 TVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKML---------V 242
Query: 910 LRSLVLGGE 918
+R LVL GE
Sbjct: 243 MRRLVLKGE 251
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 30/212 (14%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------- 104
L N+NL+I G V+I G +G GK++ ++ ++G L ++ I
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 105 --RGTVAYV-PQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
R + +V Q + I T +N+ F +Y A + + L E+
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIF---KYRGA--XSGEERRKRALECLKXAEL 134
Query: 162 GERGVN-----ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GEL 215
ER N +SGGQ+QRV++ARA+ +N + + D+P ALD+ G ++ + E
Sbjct: 135 EERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEE 194
Query: 216 SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 247
GKT V+VT+ ++ +RII + +G V+ E
Sbjct: 195 DGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 27/231 (11%)
Query: 666 IKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 723
IK ++V Y+ E+ L ++ I + V I G +G+GKS+ LN + + + G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 724 ILIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSGTVRFNLDPFS---EHSDADLWEAL 776
+ ID +L KI +G + Q +FNL P E+ + L
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQ---------QFNLIPLLTALENVELPLIFKY 112
Query: 777 ERAHLKDAIRRNSLGL--DAQVSEAGEN-----FSVGQRQXXXXXXXXXXXXKILVLDEA 829
A + R+ +L A++ E N S GQ+Q I++ DE
Sbjct: 113 RGAXSGEERRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEP 172
Query: 830 TAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 878
T A+D +T I + +++ E T++++ H +N +RI+ L G V
Sbjct: 173 TGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 31/208 (14%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP----QVSWI 117
+NL I G + ++G +G GKT+ + + G P V Y+P +S +
Sbjct: 30 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 89
Query: 118 FNA-------TVRDNILFGSAFEP-------ARYEKAIDVTSLQHDLDLLPGGDVTEIGE 163
F + TV +NI F + R A ++ ++ L+ P
Sbjct: 90 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-------- 141
Query: 164 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA--HVGRQVFDRCIRGELSGKTRV 221
+SGGQ+QRV++ARA+ DV + D+PLS LDA V + + ++ +L T
Sbjct: 142 ---QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY 198
Query: 222 LVTNQLHFLSQVDRIILVHEGMVKEEGT 249
+ +Q+ ++ DRI +++ G + + G+
Sbjct: 199 VTHDQVEAMTMGDRIAVMNRGQLLQIGS 226
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 24/221 (10%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745
L+ TI + + ++G +G GK++ L + + E GRI D+ D R I +
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD-RNISMV 89
Query: 746 IPQSPVLFSGTVRFNLD--------PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 797
V TV N+ P E W A E +++ + R AQ+S
Sbjct: 90 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA-ELLQIEELLNRYP----AQLS 144
Query: 798 EAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ---KTIREEFKSCTM 854
GQRQ +L++DE + +D + ++ K ++++ K T+
Sbjct: 145 G-------GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 197
Query: 855 LIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 895
+ ++ + DRI +++ G++L+ +P E+ S F
Sbjct: 198 YVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 238
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 31/208 (14%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP----QVSWI 117
+NL I G + ++G +G GKT+ + + G P V Y+P +S +
Sbjct: 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 88
Query: 118 FNA-------TVRDNILFGSAFEP-------ARYEKAIDVTSLQHDLDLLPGGDVTEIGE 163
F + TV +NI F + R A ++ ++ L+ P
Sbjct: 89 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-------- 140
Query: 164 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA--HVGRQVFDRCIRGELSGKTRV 221
+SGGQ+QRV++ARA+ DV + D+PLS LDA V + + ++ +L T
Sbjct: 141 ---QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY 197
Query: 222 LVTNQLHFLSQVDRIILVHEGMVKEEGT 249
+ +Q+ ++ DRI +++ G + + G+
Sbjct: 198 VTHDQVEAMTMGDRIAVMNRGQLLQIGS 225
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 24/221 (10%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745
L+ TI + + ++G +G GK++ L + + E GRI D+ D R I +
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD-RNISMV 88
Query: 746 IPQSPVLFSGTVRFNLD--------PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 797
V TV N+ P E W A E +++ + R AQ+S
Sbjct: 89 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA-ELLQIEELLNRYP----AQLS 143
Query: 798 EAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ---KTIREEFKSCTM 854
GQRQ +L++DE + +D + ++ K ++++ K T+
Sbjct: 144 G-------GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 196
Query: 855 LIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 895
+ ++ + DRI +++ G++L+ +P E+ S F
Sbjct: 197 YVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 109/231 (47%), Gaps = 35/231 (15%)
Query: 51 WDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVA- 109
W E + ++L++ G + ++G +G GKT+ + + G P + VA
Sbjct: 10 WKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD 69
Query: 110 -----YVP----QVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 153
+VP ++ +F + TV DNI F P + K Q ++
Sbjct: 70 PEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAF-----PLKLRKVPRQEIDQRVREVA 124
Query: 154 PGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 212
+TE+ R +SGGQ+QRV++ RA+ VF+ D+PLS LDA + + +R
Sbjct: 125 ELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR-----MR 179
Query: 213 GELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 256
EL G T + VT +Q+ ++ DRI +++ G++++ G+ +++ +
Sbjct: 180 AELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 89/208 (42%), Gaps = 16/208 (7%)
Query: 698 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTV 757
++G +G GK++ L + + E RG+I I +A D K + + P+ +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVA-----DPEKGIFVPPKDRDIAMVFQ 88
Query: 758 RFNLDPFSEHSDADLW----EALERAHLKDAIRRNS--LGLDAQVSEAGENFSVGQRQXX 811
+ L P D + + R + +R + LGL ++ S GQRQ
Sbjct: 89 SYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRV 148
Query: 812 XXXXXXXXXXKILVLDEATAAVD----VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 867
++ ++DE + +D VR A ++K ++ + T+ + ++ +
Sbjct: 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK-LQRQLGVTTIYVTHDQVEAMTMG 207
Query: 868 DRILLLDSGRVLEYDTPEELLSNEGSSF 895
DRI +++ G + + +P+E+ ++F
Sbjct: 208 DRIAVMNRGVLQQVGSPDEVYDKPANTF 235
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 27/212 (12%)
Query: 63 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP----QVSWIF 118
++ ++ G VA++G +G GKT+ + + G P S V +P +V +F
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81
Query: 119 -------NATVRDNILF---GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 168
+ TV +NI F EK + + + +D L + + +
Sbjct: 82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNL-------LDRKPTQL 134
Query: 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD---RCIRGELSGKTRVLVT- 224
SGGQ+QRV++ARA+ V +FD+PLS LDA++ R + + ++ EL G T V VT
Sbjct: 135 SGGQQQRVALARALVKQPKVLLFDEPLSNLDANL-RMIMRAEIKHLQQEL-GITSVYVTH 192
Query: 225 NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 256
+Q ++ RI + ++G + + GT +++ ++
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 103/241 (42%), Gaps = 12/241 (4%)
Query: 685 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 744
G+SF + + V ++G +G GK++ L L I + G I D D+ + + +G
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD--DVLVNDIPPKYREVG 78
Query: 745 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 804
++ Q+ L+ F F + + +E+ ++ A L +D + S
Sbjct: 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIA---RKLLIDNLLDRKPTQLS 135
Query: 805 VGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ---KTIREEFKSCTMLIIAHRL 861
GQ+Q K+L+ DE + +D +++ K +++E ++ + +
Sbjct: 136 GGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195
Query: 862 NTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAEN 921
+ RI + + G++++Y TP+E+ + + F + G +LR + EN
Sbjct: 196 EAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMF--VASFIGNPPTNFLRDFSVS--VEN 251
Query: 922 K 922
K
Sbjct: 252 K 252
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 35/224 (15%)
Query: 51 WDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVA- 109
W + + +++L+I G + ++G +G GKT+ + + G P + VA
Sbjct: 13 WKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVAD 72
Query: 110 -----YVP----QVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 153
+VP V+ +F + TV DNI F P + K + ++
Sbjct: 73 PEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAF-----PLKLRKVPKQEIDKRVREVA 127
Query: 154 PGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 212
+TE+ R +SGGQ+QRV++ RA+ VF+ D+PLS LDA + + R
Sbjct: 128 EXLGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKX-----R 182
Query: 213 GELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGT 249
EL G T + VT +Q+ + DRI + ++G +++ GT
Sbjct: 183 AELKKLQRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGT 226
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 87/219 (39%), Gaps = 14/219 (6%)
Query: 686 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 745
LS I + + ++G +G GK++ L + + E RG+I I+ +A D K + +
Sbjct: 25 LSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVA-----DPEKGVFV 79
Query: 746 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR------NSLGLDAQVSEA 799
P+ + + L P D + R K I + LGL ++
Sbjct: 80 PPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRK 139
Query: 800 GENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ---KTIREEFKSCTMLI 856
S GQRQ K+ + DE + +D + + K ++ + T+ +
Sbjct: 140 PRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYV 199
Query: 857 IAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 895
++ DRI + + G + + TP+E+ ++F
Sbjct: 200 THDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNTF 238
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 10/211 (4%)
Query: 694 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 753
D ++G TGAGKS L + IV+ +RG + ++G DI L R+ +G +PQ LF
Sbjct: 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGFVPQDYALF 82
Query: 754 SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXX 813
+ + + + + + LG+ + S G+RQ
Sbjct: 83 PHLSVYRNIAYGLRNVERVERDRRVREMAE-----KLGIAHLLDRKPARLSGGERQRVAL 137
Query: 814 XXXXXXXXKILVLDEATAAVDVRTDALIQKTIR---EEFKSCTMLIIAHRLNTIIDCDRI 870
++L+LDE +AVD++T ++ + +R EF + + + + D +
Sbjct: 138 ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEV 197
Query: 871 LLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 901
++ +GR++E +EL S + ++ + +
Sbjct: 198 AVMLNGRIVEKGKLKELFSAKNGEVAEFLSA 228
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 96/220 (43%), Gaps = 32/220 (14%)
Query: 61 LNINLDIPVG-SLVAIVGGTGEGKTSLISAMLGELPP----VSDASAVI------RGTVA 109
+N+D +G ++G TG GK+ + + G + P V A I R +
Sbjct: 14 FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIG 73
Query: 110 YVPQVSWIF-NATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 163
+VPQ +F + +V NI +G R + + + H LD P
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-------- 125
Query: 164 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRV 221
+SGG++QRV++ARA+ + + D+PLSA+D + + R ++ E
Sbjct: 126 ---RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182
Query: 222 LVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL--SNNGEL 259
+ + + D + ++ G + E+G ++L + NGE+
Sbjct: 183 VTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEV 222
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 23/185 (12%)
Query: 66 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDN 125
+I G ++ IVG G GKT+ + + G P ++ TVAY PQ
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEP-TEGKIEWDLTVAYKPQ------------ 354
Query: 126 ILFGSAFEPARYE--KAIDVTSLQHDL---DLLPGGDVTEIGERGVN-ISGGQKQRVSMA 179
+ +E YE ID + L + +LL + ++ +R VN +SGG+ QRV++A
Sbjct: 355 -YIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIA 413
Query: 180 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRVLVTNQLHFLSQVDRII 237
+ ++D+++ D+P + LD R R IR E + KT ++V + + + V +
Sbjct: 414 ATLLRDADIYLLDEPSAYLDVE-QRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRL 472
Query: 238 LVHEG 242
V EG
Sbjct: 473 XVFEG 477
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 46/211 (21%)
Query: 70 GSLVAIVGGTGEGKTSLISAMLGELPP--VSDASA---VIR----------------GTV 108
G +V IVG G GK++ + + G+L P D + VIR G +
Sbjct: 47 GXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEI 106
Query: 109 AYV--PQVSWIFNATVRDNI--LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 164
V PQ + V+ + L A E + E+ + L++ L ER
Sbjct: 107 RPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVL------------ER 154
Query: 165 GV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELS--GKT 219
+ ++SGG+ QRV++A A+ N+ + FD+P S LD RQ + R IR LS GK+
Sbjct: 155 EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDI---RQRLNAARAIR-RLSEEGKS 210
Query: 220 RVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 250
++V + L L + II V G G F
Sbjct: 211 VLVVEHDLAVLDYLSDIIHVVYGEPGVYGIF 241
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 23/185 (12%)
Query: 66 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDN 125
+I G ++ IVG G GKT+ + + G P ++ TVAY PQ
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP-TEGKVEWDLTVAYKPQ------------ 424
Query: 126 ILFGSAFEPARYE--KAIDVTSLQHDL---DLLPGGDVTEIGERGV-NISGGQKQRVSMA 179
+ +E YE ID + L + +LL + ++ +R V ++SGG+ QRV++A
Sbjct: 425 -YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIA 483
Query: 180 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQVDRII 237
+ ++D+++ D+P + LD R R IR E + KT ++V + + + V +
Sbjct: 484 ATLLRDADIYLLDEPSAYLDVE-QRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 542
Query: 238 LVHEG 242
+V EG
Sbjct: 543 IVFEG 547
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 86/212 (40%), Gaps = 48/212 (22%)
Query: 70 GSLVAIVGGTGEGKTSLISAMLGELPP--VSDASA---VIRGTVAYVPQVSWIFNATVRD 124
G +V IVG G GKT+ + + G+L P D + VIR R
Sbjct: 117 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIR---------------AFRG 161
Query: 125 NILFGSAFEPARYEKAIDVTSLQHDLDLLPGG----------DVTEIG------------ 162
N L + FE + + V Q+ +DLLP V E+G
Sbjct: 162 NEL-QNYFERLKNGEIRPVVKPQY-VDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELE 219
Query: 163 ---ERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 218
+R ++ +SGG+ QRV++A A+ + + FD+P S LD +V R GK
Sbjct: 220 NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK 279
Query: 219 TRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 250
++V + L L + +I V G G F
Sbjct: 280 AVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIF 311
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 23/185 (12%)
Query: 66 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDN 125
+I G ++ IVG G GKT+ + + G P ++ TVAY PQ
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP-TEGKVEWDLTVAYKPQ------------ 410
Query: 126 ILFGSAFEPARYE--KAIDVTSLQHDL---DLLPGGDVTEIGERGV-NISGGQKQRVSMA 179
+ +E YE ID + L + +LL + ++ +R V ++SGG+ QRV++A
Sbjct: 411 -YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIA 469
Query: 180 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQVDRII 237
+ ++D+++ D+P + LD R R IR E + KT ++V + + + V +
Sbjct: 470 ATLLRDADIYLLDEPSAYLDVE-QRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 528
Query: 238 LVHEG 242
+V EG
Sbjct: 529 IVFEG 533
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 56/216 (25%)
Query: 70 GSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAVIRGTVAYVPQVSWIFNATVRDNIL 127
G +V IVG G GKT+ + + G+L P D SW DN++
Sbjct: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDND-------------SW-------DNVI 142
Query: 128 -------FGSAFEPARYEKAIDVTSLQHDLDLLPGG----------DVTEIG-------- 162
+ FE + + V Q+ +DLLP V E+G
Sbjct: 143 RAFRGNELQNYFERLKNGEIRPVVKPQY-VDLLPKAVKGKVRELLKKVDEVGKFEEVVKE 201
Query: 163 -------ERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 214
+R ++ +SGG+ QRV++A A+ + + FD+P S LD +V R
Sbjct: 202 LELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA 261
Query: 215 LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 250
GK ++V + L L + +I V G G F
Sbjct: 262 NEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIF 297
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 100/229 (43%), Gaps = 36/229 (15%)
Query: 53 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVS----DASAVIRGT 107
K + L N+N++I G I+G +G GKT+ + + G ++P D V
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73
Query: 108 VAYVP----QVSWIF-------NATVRDNILFG------SAFE-PARYEKAIDVTSLQHD 149
VP ++ +F N T +NI F S E R E+ + + H
Sbjct: 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV 133
Query: 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHV--GRQVF 207
L+ P +SGGQ+QRV++ARA+ + + + D+P S LDA + +
Sbjct: 134 LNHFPR-----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182
Query: 208 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 256
+ ++ L V+ + + DR+ ++ +G + + G EDL +N
Sbjct: 183 VKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 94/217 (43%), Gaps = 15/217 (6%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL--- 739
L ++ I ++ GI+G +GAGK++ + + + G + D +A G + +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 740 -RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ--V 796
RKI G++ Q+ L+ NL F + + + ++ + + LD +
Sbjct: 81 DRKI-GMVFQTWALYP-----NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVL 134
Query: 797 SEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTM 854
+ S GQ+Q +L+LDE + +D R + ++E T+
Sbjct: 135 NHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTL 194
Query: 855 LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
L+++H I DR+ +L G++++ PE+L N
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 110/240 (45%), Gaps = 19/240 (7%)
Query: 685 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----ELERGRILIDGFDIAKFGLMDLR 740
G+S I + IVG + +GKS+++ + + + + GR+L G D+ +LR
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 741 KI----LGIIPQSPVLFSGTVRFNLDPFSEHSDAD--LW---EALERAHLKDAIRRNSLG 791
KI + ++PQ+ ++ F + +A W E +E+A + +R L
Sbjct: 86 KIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKA--SEKLRMVRLN 143
Query: 792 LDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALI--QKTIREEF 849
+A ++ S G +Q +L+LDE T+A+DV T A I ++
Sbjct: 144 PEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKM 203
Query: 850 KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK-MVQSTGAANA 907
T++ + H + + D++ ++ G ++EY++ ++ N +++ ++ S A NA
Sbjct: 204 LKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLHPYTRGLINSIMAVNA 263
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 32/222 (14%)
Query: 63 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---VSDASAVIRGT------------ 107
I+LDI S+ AIVG + GK+++I AM LPP + + +G
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 108 -----VAYVPQVSW-IFNATVRDNILFGSAFEP--ARYEKAIDVTSLQHDLDLLPGGDVT 159
+A VPQ + N T++ F E R+ + + L ++
Sbjct: 87 IRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEA 146
Query: 160 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD----AHVGRQVFDRCIRGEL 215
+ + +SGG KQRV +A A+ + V I D+P SALD AH+ + + + ++
Sbjct: 147 VLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKI 206
Query: 216 SGKTRVLVTNQLHFLSQV-DRIILVHEG-MVKEEGTFEDLSN 255
T + VT+ + +++ D++ +++ G +V+ TF+ N
Sbjct: 207 ---TLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKN 245
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 65/238 (27%), Positives = 108/238 (45%), Gaps = 34/238 (14%)
Query: 56 ERPTLLN-INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV------------SDASA 102
++ L+N ++L I G +VAI+G G GK++L+ + G L P S
Sbjct: 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK 81
Query: 103 VIRGTVAYVPQVSWI-FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 161
+ T A + Q S + F +V + I G A Y + D +LQ ++ D +
Sbjct: 82 ALARTRAVMRQYSELAFPFSVSEVIQMGR----APYGGSQDRQALQQ---VMAQTDCLAL 134
Query: 162 GERGVNI-SGGQKQRVSMARAVYS------NSDVFIFDDPLSALDAHVGRQVFDRCIRGE 214
+R + SGG++QRV +AR + D+P SALD + + R +R +
Sbjct: 135 AQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL-RLLR-Q 192
Query: 215 LSGKTRVLVTNQLHFLS----QVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAG 268
L+ + + V LH L+ DRI+L+ +G + GT E++ N L Q + G
Sbjct: 193 LTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAETLTQWYQADLG 250
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 24/233 (10%)
Query: 673 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 732
L Y + +++ +S I + V I+G GAGKS++L L + G + G ++
Sbjct: 17 LHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLN 76
Query: 733 KFGLMDLRKILGIIPQS-----PVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR 787
+ L + ++ Q P S ++ P+ D +AL++ +
Sbjct: 77 SWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDR---QALQQV----MAQT 129
Query: 788 NSLGL---DAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDV----RTDAL 840
+ L L D +V GE V + + L LDE T+A+D+ T L
Sbjct: 130 DCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRL 189
Query: 841 IQKTIREE-FKSCTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNE 891
+++ R+E C +L H LN + DRI+LL G+++ TPEE+L+ E
Sbjct: 190 LRQLTRQEPLAVCCVL---HDLNLAALYADRIMLLAQGKLVACGTPEEVLNAE 239
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 35/218 (16%)
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD-------------ASAVIRGTV 108
I+L +P G +V ++G G GKT+ +SA+ G + A + R +
Sbjct: 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGI 83
Query: 109 AYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLD----LLPGGDVTEIGE 163
A VP+ IF TV +N+ G+ Y + D ++ DL+ L P + E
Sbjct: 84 ALVPEGRRIFPELTVYENLXXGA------YNRK-DKEGIKRDLEWIFSLFP-----RLKE 131
Query: 164 R----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 219
R G +SGG++Q +++ RA+ S + D+P L + +VF+ + G T
Sbjct: 132 RLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTT 191
Query: 220 RVLV-TNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 256
+LV N L L ++ G + EG +L +N
Sbjct: 192 ILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 22/220 (10%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA-KFGLMDLRK 741
+ G+ +P V ++G GAGK++ L+ + +V ++G+I+ +G DI K + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 742 ILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN-----SL--GLDA 794
+ ++P+ +F + ++ D K+ I+R+ SL L
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKD----------KEGIKRDLEWIFSLFPRLKE 131
Query: 795 QVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEAT---AAVDVRTDALIQKTIREEFKS 851
++ + G S G++Q K+L DE + A + V + + I +E +
Sbjct: 132 RLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQE-GT 190
Query: 852 CTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 891
+L+ + L + +L++G+++ ELL NE
Sbjct: 191 TILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 36/229 (15%)
Query: 53 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVS----DASAVIRGT 107
K + L N+N++I G I+G +G GKT+ + + G ++P D V
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73
Query: 108 VAYVP----QVSWIF-------NATVRDNILFG------SAFE-PARYEKAIDVTSLQHD 149
VP ++ +F N T +NI F S E R E+ + + H
Sbjct: 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV 133
Query: 150 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHV--GRQVF 207
L+ P +SG Q+QRV++ARA+ + + + D+P S LDA + +
Sbjct: 134 LNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182
Query: 208 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 256
+ ++ L V+ + + DR+ ++ +G + + G EDL +N
Sbjct: 183 VKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 93/217 (42%), Gaps = 15/217 (6%)
Query: 683 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL--- 739
L ++ I ++ GI+G +GAGK++ + + + G + D +A G + +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 740 -RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ--V 796
RKI G++ Q+ L+ NL F + + + ++ + + LD +
Sbjct: 81 DRKI-GMVFQTWALYP-----NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVL 134
Query: 797 SEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTM 854
+ S Q+Q +L+LDE + +D R + ++E T+
Sbjct: 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTL 194
Query: 855 LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
L+++H I DR+ +L G++++ PE+L N
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 109/221 (49%), Gaps = 37/221 (16%)
Query: 58 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTV--------- 108
P L +I+L + G ++ I+G +G GKT+L+ + G P S ++ T+
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77
Query: 109 -----AYVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPG 155
Y+ Q +F + TV NI +G +A E R E +++T
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTG---------- 127
Query: 156 GDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG- 213
++E+ R + +SGGQ+QR ++ARA+ + ++ + D+P SALD + RQ+ + I
Sbjct: 128 --ISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL 185
Query: 214 ELSGKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 253
+GK+ V V+ ++ L DRI ++ +G + + + +L
Sbjct: 186 RANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 114/258 (44%), Gaps = 29/258 (11%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI-AKFGLMDL 739
PVL+ +S ++ P + + I+G +G GK+++L L + + G I + G I +K + +
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77
Query: 740 R-KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 797
R + LG + Q VLF TV N+ + A ER ++ + G+
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIA--YGLGNGKGRTAQERQRIEAMLELT--GISELAG 133
Query: 798 EAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSC----- 852
S GQ+Q ++++LDE +A+D + +++ IRE+ +
Sbjct: 134 RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQIREDMIAALRANG 189
Query: 853 -TMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSN-----------EGSSFSKMV 899
+ + ++H R + DRI ++ GR+L+ +P EL EG F +
Sbjct: 190 KSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFIGEGIVFPAAL 249
Query: 900 QSTGAANAQYLRSLVLGG 917
+ G A+ + R V G
Sbjct: 250 NADGTADCRLGRLPVQSG 267
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 32/205 (15%)
Query: 42 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 100
I ++N + K ER +L NINL++ G V I+G G GKT+L+ A+ G LP
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP--YSG 58
Query: 101 SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD--- 157
+ I G +R+ I + + P YE + V + + + L G D
Sbjct: 59 NIFINGMEV----------RKIRNYIRYSTNL-PEAYEIGVTVNDIVYLYEELKGLDRDL 107
Query: 158 ------VTEIGE-----RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 206
++GE + +S GQ V + A+ S ++ D+P +DA R V
Sbjct: 108 FLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA-ARRHV 166
Query: 207 FDRCIRGELSGKTRVLVTNQLHFLS 231
R I+ GK +LVT++L L+
Sbjct: 167 ISRYIKE--YGKEGILVTHELDMLN 189
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 97/206 (47%), Gaps = 29/206 (14%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT------------ 107
L I+L + G V+I+G +G GK++L+ +LG L ++ + G
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 108 -----VAYVPQVSWIF-NATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVT 159
+ +V Q ++ T +N++ +P + K ++ L L GD
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERG----EYLLSELGLGD-- 132
Query: 160 EIGERGVNISGGQKQRVSMARAVYSNSDVFIF-DDPLSALDAHVGRQVFDRCIRGELSGK 218
++ + +SGG++QRV++ARA+ +N + +F D+P LD+ ++V D ++ G
Sbjct: 133 KLSRKPYELSGGEQQRVAIARAL-ANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGT 191
Query: 219 TRVLVTNQLHFLSQVDRIILVHEGMV 244
+ V+VT++ R + + +G V
Sbjct: 192 SIVMVTHERELAELTHRTLEMKDGKV 217
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 31/50 (62%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 731
+L G+S ++ + V I+G +G+GKS++L L + G++ ++G ++
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV 68
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 98/226 (43%), Gaps = 24/226 (10%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDA 100
E L +++ + G + I+G G GK++LI+ + G ++ A
Sbjct: 18 GEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA 77
Query: 101 SAVIRGTVAYVPQVSWIFNATVRDNILFG------SAFEPARYEKAI--DVTSLQHDLDL 152
G V + TV +N+L G S Y+K I + ++ +
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 153 LPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 211
L ++ + +R +SGGQ + V + RA+ +N + + D+P++ + + +F+ +
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 212 RGELSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNN 256
+ G T +++ ++L L+ +D + ++ G + EG E+ N
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 101/238 (42%), Gaps = 26/238 (10%)
Query: 672 VLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 731
+++Y E L G+S ++ D I+G G+GKS+++N + ++ + GR+ + DI
Sbjct: 13 IVKYFGEFK-ALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71
Query: 732 AKFGLMDLRKILGIIP--QSP-VLFSGTVRFNL-----DPFSEHSDADL---WEALERAH 780
+L GI+ Q+P L TV NL +P ++ W E
Sbjct: 72 TNKEPAELYH-YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEM 130
Query: 781 LKDAIR-RNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAV------ 833
++ A + L L S GQ + K++V+DE A V
Sbjct: 131 VEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 834 DVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
D+ L K K T LII HRL+ +++ D + ++ +G+++ EE + N
Sbjct: 191 DIFNHVLELKA-----KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 98/226 (43%), Gaps = 24/226 (10%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDA 100
E L +++ + G + I+G G GK++LI+ + G ++ A
Sbjct: 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA 77
Query: 101 SAVIRGTVAYVPQVSWIFNATVRDNILFG------SAFEPARYEKAI--DVTSLQHDLDL 152
G V + TV +N+L G S Y+K I + ++ +
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 153 LPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 211
L ++ + +R +SGGQ + V + RA+ +N + + D+P++ + + +F+ +
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 212 RGELSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNN 256
+ G T +++ ++L L+ +D + ++ G + EG E+ N
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 97/239 (40%), Gaps = 28/239 (11%)
Query: 672 VLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 731
+++Y E L G+S ++ D I+G G+GKS+++N + ++ + GR+ + DI
Sbjct: 13 IVKYFGEFK-ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71
Query: 732 AKFGLMDLRKILGIIP--QSPV----------LFSGTVRFNLDPFSEHSDADLWEALERA 779
+L GI+ Q+P L G + P + W E
Sbjct: 72 TNKEPAELYH-YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKK-WIPKEEE 129
Query: 780 HLKDAIR-RNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAV----- 833
++ A + L L S GQ + K++V+DE A V
Sbjct: 130 MVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 189
Query: 834 -DVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
D+ L K K T LII HRL+ +++ D + ++ +G+++ EE + N
Sbjct: 190 HDIFNHVLELKA-----KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 98/227 (43%), Gaps = 18/227 (7%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--LERGRILIDGFDIAKFGLMD- 738
+L G++ +P + ++G GAGKS++ L E +ERG IL+DG +I + +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 739 LRKILGIIPQSPVLFSGTVRFNLDPFS-------EHSDADLWEALERAHLKDAIRRNSLG 791
RK L + Q PV G N + E A+ W +++A + + +
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKAL--ELLDWDESY 135
Query: 792 LDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIRE-EFK 850
L ++E FS G+++ VLDE + +D+ ++ + +
Sbjct: 136 LSRYLNEG---FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGP 192
Query: 851 SCTMLIIAH--RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 895
+ L+I H R+ I D++ ++ GRV+ PE L E +
Sbjct: 193 NFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGY 239
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 97/226 (42%), Gaps = 24/226 (10%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDA 100
E L +++ + G + I+G G GK++LI+ + G ++ A
Sbjct: 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA 77
Query: 101 SAVIRGTVAYVPQVSWIFNATVRDNILFG------SAFEPARYEKAI--DVTSLQHDLDL 152
G V + TV +N+L G S Y+K I + ++ +
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 153 LPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 211
L ++ + +R +SGGQ + V + RA+ +N + + D P++ + + +F+ +
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL 197
Query: 212 RGELSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNN 256
+ G T +++ ++L L+ +D + ++ G + EG E+ N
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 26/238 (10%)
Query: 672 VLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 731
+++Y E L G+S ++ D I+G G+GKS+++N + ++ + GR+ + DI
Sbjct: 13 IVKYFGEFK-ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71
Query: 732 AKFGLMDLRKILGIIP--QSP-VLFSGTVRFNL-----DPFSEHSDADL---WEALERAH 780
+L GI+ Q+P L TV NL +P ++ W E
Sbjct: 72 TNKEPAELYH-YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEM 130
Query: 781 LKDAIR-RNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAV------ 833
++ A + L L S GQ + K++V+D+ A V
Sbjct: 131 VEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAH 190
Query: 834 DVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 890
D+ L K K T LII HRL+ +++ D + ++ +G+++ EE + N
Sbjct: 191 DIFNHVLELKA-----KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 91/176 (51%), Gaps = 15/176 (8%)
Query: 72 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRDNILFGS 130
++ ++G G GKT+LI + G L P + + + V+ PQ ++ F TVR LF
Sbjct: 380 ILVMMGENGTGKTTLIKLLAGALKP-DEGQDIPKLNVSMKPQKIAPKFPGTVRQ--LF-- 434
Query: 131 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVF 189
F+ R + + Q D++ + +I ++ V ++SGG+ QRV++ A+ +D++
Sbjct: 435 -FKKIRGQ----FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIY 489
Query: 190 IFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQVDRIILVHEGM 243
+ D+P + LD+ R + + IR + + KT +V + + + ++V EG+
Sbjct: 490 LIDEPSAYLDSE-QRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGI 544
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 167 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 199
+SGG+ QR ++ + +DV++FD+P S LD
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 97/240 (40%), Gaps = 39/240 (16%)
Query: 54 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR---GTVAY 110
K + L I+ I G + G G GKT+L++ + P S + G V Y
Sbjct: 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGY 90
Query: 111 VPQVSWIFNATVRDNILFGSAFEPARY---EKAIDVT--------SLQHDLD-------- 151
+ TVR +I F S ++ E+ IDV + D+D
Sbjct: 91 SAE-------TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAH 143
Query: 152 -LLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 209
LL + ++ + +S G+KQRV +ARA+ V I D+P + LD + R+
Sbjct: 144 QLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD-FIARESLLS 202
Query: 210 CIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL---SNNGELFQK 262
+ + HF+ ++ +I+L+ +G ++G ED+ N FQK
Sbjct: 203 ILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENXSRFFQK 262
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 45/246 (18%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 741
+L +S+ I DK + G GAGK+++LN L + ++ A G ++L
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNIL-------------NAYEPATSGTVNL-- 80
Query: 742 ILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA----------------HLKDAI 785
G P + TVR ++ F HS + ++ ER + D I
Sbjct: 81 -FGKXPGKVGYSAETVRQHIG-FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 786 RRNS------LGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDV---R 836
R + +G A+ + S G++Q ++L+LDE A +D
Sbjct: 139 RNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARE 198
Query: 837 TDALIQKTIREEFKSCTMLIIAHRLNTII-DCDRILLLDSGRVLEYDTPEELLSNEGSS- 894
+ I ++ + + + + + H + I + +ILLL G+ ++ E++L++E S
Sbjct: 199 SLLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENXSR 258
Query: 895 -FSKMV 899
F K V
Sbjct: 259 FFQKNV 264
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 56 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD-------ASAVIRGTV 108
++P L I + I G++V G G GKT+L+ + L P+ ++G +
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80
Query: 109 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 168
++P+ + ++ L A + Y ++ + +D L +V ++ ++ +
Sbjct: 81 FFLPEEIIVPRKISVEDYLKAVA---SLYGVKVNKNEI---MDALESVEVLDLKKKLGEL 134
Query: 169 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 207
S G +RV +A + N+++++ DDP+ A+D +V
Sbjct: 135 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 173
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 38/181 (20%), Positives = 80/181 (44%), Gaps = 13/181 (7%)
Query: 681 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 740
PVL ++ TI + V G G GK+++L T+ ++ +G I+ +G I K ++
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VK 77
Query: 741 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR-NSLGLDAQVSEA 799
+ +P+ ++ + +++ + + + + + + DA+ L L ++ E
Sbjct: 78 GKIFFLPEEIIV---PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGE- 133
Query: 800 GENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAH 859
S G + +I VLD+ A+D + + K+I E K ++II+
Sbjct: 134 ---LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 190
Query: 860 R 860
R
Sbjct: 191 R 191
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPA-----ISIRNGYFSWDSKAERPTLL 61
+ V + K EE + + P P G+ + + N F + + +P +
Sbjct: 626 EFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTS-KPQIT 684
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 98
+IN + S +A++G G GK++LI+ + GEL P S
Sbjct: 685 DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 721
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 168 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA-HVGRQV--FDRCIRGELSGKTRVLVT 224
+SGG K ++++ARAV N+D+ + D+P + LD +V V + C G T + ++
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC------GITSITIS 596
Query: 225 NQLHFLSQVDRIILVHEGMV--KEEGTFEDL 253
+ FL V I+ +EG+ K +G F +
Sbjct: 597 HDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 627
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 638 GNYIELPSEAPLV----------IESNRPPPGW------PSSGSIKFEDVVLRYRPELPP 681
GN+ E + P +E P PG+ +K + +Y P
Sbjct: 622 GNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTSKP 681
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL 713
+ ++F S ++ ++G GAGKS+++N L
Sbjct: 682 QITDINFQCSLSSRIAVIGPNGAGKSTLINVL 713
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPA-----ISIRNGYFSWDSKAERPTLL 61
+ V + K EE + + P P G+ + + N F + + +P +
Sbjct: 632 EFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTS-KPQIT 690
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 98
+IN + S +A++G G GK++LI+ + GEL P S
Sbjct: 691 DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 727
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 168 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA-HVGRQV--FDRCIRGELSGKTRVLVT 224
+SGG K ++++ARAV N+D+ + D+P + LD +V V + C G T + ++
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC------GITSITIS 602
Query: 225 NQLHFLSQVDRIILVHEGMV--KEEGTFEDL 253
+ FL V I+ +EG+ K +G F +
Sbjct: 603 HDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 638 GNYIELPSEAPLV----------IESNRPPPGW------PSSGSIKFEDVVLRYRPELPP 681
GN+ E + P +E P PG+ +K + +Y P
Sbjct: 628 GNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTSKP 687
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL 713
+ ++F S ++ ++G GAGKS+++N L
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVL 719
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 7 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPA-----ISIRNGYFSWDSKAERPTLL 61
+ V + K EE + + P P G+ + + N F + + +P +
Sbjct: 632 EFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTS-KPQIT 690
Query: 62 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVPQ 113
+IN + S +A++G G GK++LI+ + GEL P S +AY+ Q
Sbjct: 691 DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQ 743
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 168 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA-HVGRQV--FDRCIRGELSGKTRVLVT 224
+SGG K ++++ARAV N+D+ + D+P + LD +V V + C G T + ++
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC------GITSITIS 602
Query: 225 NQLHFLSQVDRIILVHEGMV--KEEGTFEDL 253
+ FL V I+ +EG+ K +G F +
Sbjct: 603 HDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 638 GNYIELPSEAPLV----------IESNRPPPGW------PSSGSIKFEDVVLRYRPELPP 681
GN+ E + P +E P PG+ +K ++ +Y P
Sbjct: 628 GNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKP 687
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL 713
+ ++F S ++ ++G GAGKS+++N L
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVL 719
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 157 DVTEIGERGVNI-SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 215
++T + + NI SGG QR+ +A ++ +DV+IFD P S LD R + IR L
Sbjct: 127 NMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVR-ERMNMAKAIRELL 185
Query: 216 SGKTRVLVTNQLHFLSQVDRIILVHEG 242
K ++V + L L + +I + G
Sbjct: 186 KNKYVIVVDHDLIVLDYLTDLIHIIYG 212
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 70 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI-FNATVRDNILF 128
G ++ I+G G GKT+ ++GE+ + + ++Y PQ + ++ TV+ +
Sbjct: 294 GEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLEN 353
Query: 129 GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSD 187
S + A+ +S + ++ ++ + E VN +SGG+ Q++ +A + +D
Sbjct: 354 AS-------KDALSTSSWFFE-EVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEAD 405
Query: 188 VFIFDDPLSALDAHVGRQVFDRCIR 212
+++ D P S LD R + + I+
Sbjct: 406 LYVLDQPSSYLDVE-ERYIVAKAIK 429
>pdb|3N75|A Chain A, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|B Chain B, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|C Chain C, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|D Chain D, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3N75|E Chain E, X-Ray Crystal Structure Of The Escherichia Coli Inducible
Lysine Decarboxylase Ldci
pdb|3Q16|A Chain A, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|B Chain B, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|C Chain C, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|D Chain D, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
pdb|3Q16|E Chain E, Linkage Between The Bacterial Acid Stress And Stringent
Responses: The Structure Of The Inducible Lysine
Decarboxylase
Length = 715
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 89 AMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 148
+LG +P A I V P +W +A + ++ G + +K +DV S+
Sbjct: 270 GILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKSIHF 329
Query: 149 DLDLLPGGDVTEIGERGVNISGGQ 172
D +P + + I E +SGG+
Sbjct: 330 DSAWVPYTNFSPIYEGKCGMSGGR 353
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML 91
A L N+++ IP+G+ VA+ G +G GK++L++ +L
Sbjct: 635 AREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 160 EIGERGVNISGGQKQRVSMARAVYSNSD---VFIFDDPLSALDAHVGRQVFDRCIRGELS 216
++G+ +SGG+ QRV +A ++ S+ ++I D+P + L ++ D R +
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 217 GKTRVLVTNQLHFLSQVDRII 237
G T +++ + L + D II
Sbjct: 898 GDTVLVIEHNLDVIKTADYII 918
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSL 86
L NI+++IP G LV + G +G GK+SL
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML 91
A L N+++ IP+G+ VA+ G +G GK++L++ +L
Sbjct: 635 AREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 160 EIGERGVNISGGQKQRVSMARAVYSNSD---VFIFDDPLSALDAHVGRQVFDRCIRGELS 216
++G+ +SGG+ QRV +A ++ S+ ++I D+P + L ++ D R +
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 217 GKTRVLVTNQLHFLSQVDRII 237
G T +++ + L + D II
Sbjct: 898 GDTVLVIEHNLDVIKTADYII 918
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSL 86
L NI+++IP G LV + G +G GK+SL
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 55 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML 91
A L N+++ IP+G+ VA+ G +G GK++L++ +L
Sbjct: 333 AREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 160 EIGERGVNISGGQKQRVSMARAVYSNSD---VFIFDDPLSALDAHVGRQVFDRCIRGELS 216
++G+ +SGG+ QRV +A ++ S+ ++I D+P + L ++ D R +
Sbjct: 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 217 GKTRVLVTNQLHFLSQVDRII 237
G T +++ + L + D II
Sbjct: 596 GDTVLVIEHNLDVIKTADYII 616
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSL 86
L NI+++IP G LV + G +G GK+SL
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 142 DVTSLQHDLDLLP--GGDVTEIGERGVNISGGQKQRVSMA---RAVYSNSDVFIFDDPLS 196
++ S++ L +L G ++G+ +SGG+ QR+ +A R + ++I D+P
Sbjct: 778 NIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTV 837
Query: 197 ALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV------HEGMVKEEGTF 250
L R++ + R G T +++ + L + D II + G + GT
Sbjct: 838 GLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTP 897
Query: 251 EDLSNN 256
E+++ N
Sbjct: 898 EEIAKN 903
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 60 LLNINLDIPVGSLVAIVGGTGEGKTSLISAML 91
L NI+++IP+G V + G +G GK+SL+ L
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETL 631
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 38/238 (15%)
Query: 42 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDA 100
+SI++ + S + KA L ++LD+ G + AI+G G GK++L + + G E V+
Sbjct: 2 LSIKDLHVSVEDKA---ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 58
Query: 101 SAVIRGT--VAYVPQ---VSWIFNA--------TVRDNILFGSAFEPARYEKAIDVTSLQ 147
+ +G +A P+ IF A V + +A R + Q
Sbjct: 59 TVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG------Q 112
Query: 148 HDLDLLPGGDVTE-----------IGERGVNI--SGGQKQRVSMARAVYSNSDVFIFDDP 194
LD D+ E + R VN+ SGG+K+R + + ++ I D+
Sbjct: 113 ETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 172
Query: 195 LSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV--DRIILVHEGMVKEEGTF 250
S LD + V D ++ ++VT+ L + D + ++++G + + G F
Sbjct: 173 DSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 14/212 (6%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF--RIVELERGRILIDGFDIAKFGLMDL 739
+L GLS + P + I+G G+GKS++ TL E+ G + G D+ D
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPED- 74
Query: 740 RKILGIIP--QSPVLFSGTVR--FNLDPFSEHSDADLWEALERAHLKDAIRRN----SLG 791
R GI Q PV G F + E L+R +D + +
Sbjct: 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMP 134
Query: 792 LDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ---KTIREE 848
D FS G+++ ++ +LDE+ + +D+ ++ ++R+
Sbjct: 135 EDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG 194
Query: 849 FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 880
+S ++ R+ I D + +L GR+++
Sbjct: 195 KRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 226
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 38/242 (15%)
Query: 38 GLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPP 96
G +SI++ + S + KA L ++LD+ G + AI+G G GK++L + + G E
Sbjct: 17 GSHMLSIKDLHVSVEDKA---ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE 73
Query: 97 VSDASAVIRGT--VAYVPQ---VSWIFNA--------TVRDNILFGSAFEPARYEKAIDV 143
V+ + +G +A P+ IF A V + +A R +
Sbjct: 74 VTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG--- 130
Query: 144 TSLQHDLDLLPGGDVTE-----------IGERGVNI--SGGQKQRVSMARAVYSNSDVFI 190
Q LD D+ E + R VN+ SGG+K+R + + ++ I
Sbjct: 131 ---QETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCI 187
Query: 191 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV--DRIILVHEGMVKEEG 248
D+ S LD + V D ++ ++VT+ L + D + ++++G + + G
Sbjct: 188 LDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
Query: 249 TF 250
F
Sbjct: 248 DF 249
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 14/212 (6%)
Query: 682 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF--RIVELERGRILIDGFDIAKFGLMDL 739
+L GLS + P + I+G G+GKS++ TL E+ G + G D+ D
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPED- 93
Query: 740 RKILGIIP--QSPVLFSGTVR--FNLDPFSEHSDADLWEALERAHLKDAIRRN----SLG 791
R GI Q PV G F + E L+R +D + +
Sbjct: 94 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMP 153
Query: 792 LDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQ---KTIREE 848
D FS G+++ ++ +LDE+ + +D+ ++ ++R+
Sbjct: 154 EDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG 213
Query: 849 FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 880
+S ++ R+ I D + +L GR+++
Sbjct: 214 KRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 67 IPVGSLVAIVGGTGEGKTSLISAMLGELP 95
I +G V + GGTG GKT+ I +++ +P
Sbjct: 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP 196
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/104 (19%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 161 IGERGVNISGGQKQRVSMA---RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 217
+G+ +SGG+ QR+ +A R V++ D+P + L ++ + ++ +G
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 218 KTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQ 261
T + V +++ ++ D ++ + G ++ G E+ Q
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ 827
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 672 VLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 714
V R + PP L G +V VGR+ GKSS+LN LF
Sbjct: 11 VARTPGDYPPPLKG---------EVAFVGRSNVGKSSLLNALF 44
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 167 NISGGQKQRVSMARAVYSN--SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVT 224
+SGG+ QR+ +A + S +++ D+P L R++ + R G T ++V
Sbjct: 521 TLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVE 580
Query: 225 NQLHFLSQVDRIILV------HEGMVKEEGTFEDLSNN 256
+ + D I+ + H G + G +++L N
Sbjct: 581 HDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 161 IGERGVNISGGQKQRVSMARAVYSNS---DVFIFDDPLSALDAHVGRQVFDRCIRGEL-S 216
+G+ +SGG+ QRV +A + S V+I D+P + L R++ + I G +
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLN-VINGLVDK 915
Query: 217 GKTRVLVTNQLHFLSQVDRII 237
G T +++ + L + D II
Sbjct: 916 GNTVIVIEHNLDVIKTSDWII 936
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,977,418
Number of Sequences: 62578
Number of extensions: 1122909
Number of successful extensions: 3888
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3400
Number of HSP's gapped (non-prelim): 287
length of query: 1050
length of database: 14,973,337
effective HSP length: 109
effective length of query: 941
effective length of database: 8,152,335
effective search space: 7671347235
effective search space used: 7671347235
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)