Query 001581
Match_columns 1050
No_of_seqs 376 out of 2602
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 04:22:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0979 Structural maintenance 100.0 2E-117 4E-122 955.7 108.7 1024 7-1039 6-1062(1072)
2 COG1196 Smc Chromosome segrega 100.0 5.1E-99 1E-103 923.1 106.4 973 21-1017 1-1151(1163)
3 KOG0250 DNA repair protein RAD 100.0 1.5E-93 3.2E-98 784.2 92.0 972 18-1024 37-1073(1074)
4 KOG0933 Structural maintenance 100.0 3.3E-84 7.1E-89 693.9 94.6 973 21-1023 1-1172(1174)
5 KOG0964 Structural maintenance 100.0 1.4E-84 3.1E-89 692.7 89.0 977 21-1020 1-1184(1200)
6 KOG0996 Structural maintenance 100.0 1E-78 2.2E-83 663.8 92.5 985 16-1024 79-1286(1293)
7 TIGR02169 SMC_prok_A chromosom 100.0 2.9E-77 6.4E-82 762.8 106.4 947 22-1004 1-1137(1164)
8 KOG0018 Structural maintenance 100.0 3.5E-76 7.5E-81 639.8 84.4 948 20-1004 1-1112(1141)
9 TIGR02168 SMC_prok_B chromosom 100.0 4.6E-65 1E-69 654.2 108.0 265 22-297 1-278 (1179)
10 PRK02224 chromosome segregatio 100.0 1.3E-48 2.9E-53 476.2 91.8 161 21-186 1-171 (880)
11 PRK03918 chromosome segregatio 100.0 3.3E-45 7.1E-50 448.5 95.7 198 21-222 1-203 (880)
12 PRK01156 chromosome segregatio 100.0 3.6E-43 7.8E-48 427.3 94.9 196 21-222 1-207 (895)
13 COG0419 SbcC ATPase involved i 100.0 3E-40 6.4E-45 397.3 91.6 162 21-185 1-175 (908)
14 TIGR00606 rad50 rad50. This fa 100.0 9.7E-37 2.1E-41 379.7 82.1 165 22-191 2-196 (1311)
15 PRK04863 mukB cell division pr 100.0 1.1E-32 2.3E-37 332.9 94.9 277 19-298 3-402 (1486)
16 PRK10246 exonuclease subunit S 100.0 6.5E-32 1.4E-36 326.8 93.5 164 21-186 1-189 (1047)
17 COG4717 Uncharacterized conser 100.0 5.7E-32 1.2E-36 289.1 77.5 188 811-1017 787-982 (984)
18 TIGR00618 sbcc exonuclease Sbc 100.0 2.6E-31 5.6E-36 325.3 91.9 164 21-186 1-185 (1042)
19 PF13514 AAA_27: AAA domain 100.0 2.8E-29 6E-34 309.0 84.0 190 811-1018 909-1110(1111)
20 PRK10869 recombination and rep 100.0 3.5E-31 7.6E-36 295.6 52.9 137 23-176 2-152 (553)
21 TIGR02680 conserved hypothetic 100.0 7.2E-25 1.6E-29 270.5 105.0 87 935-1026 1244-1338(1353)
22 KOG0962 DNA repair protein RAD 100.0 5.4E-24 1.2E-28 242.8 76.5 163 20-187 1-191 (1294)
23 COG0497 RecN ATPase involved i 100.0 1.5E-26 3.2E-31 245.3 52.0 184 816-1003 301-493 (557)
24 TIGR03185 DNA_S_dndD DNA sulfu 100.0 2.4E-25 5.2E-30 258.0 63.3 156 21-177 1-182 (650)
25 PF02463 SMC_N: RecF/RecN/SMC 100.0 9.5E-30 2E-34 255.8 22.5 123 22-144 1-135 (220)
26 PHA02562 46 endonuclease subun 100.0 1.5E-27 3.2E-32 277.3 42.4 369 20-421 1-383 (562)
27 TIGR00634 recN DNA repair prot 100.0 3.7E-25 8E-30 251.4 39.0 184 23-226 2-203 (563)
28 COG4913 Uncharacterized protei 99.9 9.2E-18 2E-22 176.2 78.4 150 21-174 15-208 (1104)
29 KOG0250 DNA repair protein RAD 99.9 4.4E-18 9.4E-23 190.2 59.0 579 165-766 185-800 (1074)
30 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.4E-22 3E-27 207.1 16.1 142 21-162 1-157 (251)
31 COG1196 Smc Chromosome segrega 99.9 3.7E-17 8.1E-22 202.3 62.8 179 179-357 160-339 (1163)
32 KOG0996 Structural maintenance 99.9 6.7E-17 1.5E-21 180.1 57.3 192 528-720 616-878 (1293)
33 TIGR02168 SMC_prok_B chromosom 99.9 4.4E-17 9.6E-22 210.3 64.8 183 816-1004 969-1152(1179)
34 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.1E-21 4.6E-26 197.2 14.9 138 23-163 1-145 (247)
35 TIGR02169 SMC_prok_A chromosom 99.9 1.5E-16 3.2E-21 204.5 60.7 119 193-311 165-283 (1164)
36 cd03242 ABC_RecF RecF is a rec 99.8 2.4E-20 5.2E-25 191.9 18.2 139 23-175 1-139 (270)
37 PRK00064 recF recombination pr 99.8 9.1E-20 2E-24 194.6 20.8 140 21-175 1-141 (361)
38 cd03241 ABC_RecN RecN ATPase i 99.8 2.8E-20 6E-25 192.1 15.4 133 23-172 1-147 (276)
39 PRK14079 recF recombination pr 99.8 2.5E-19 5.4E-24 189.9 22.2 138 21-175 1-138 (349)
40 KOG0964 Structural maintenance 99.8 3.8E-14 8.2E-19 154.8 59.1 502 184-718 163-766 (1200)
41 cd03277 ABC_SMC5_euk Eukaryoti 99.8 4.4E-20 9.4E-25 180.9 11.9 111 21-168 1-111 (213)
42 PF12128 DUF3584: Protein of u 99.8 2E-12 4.4E-17 160.5 79.8 59 939-1003 1121-1184(1201)
43 TIGR00634 recN DNA repair prot 99.8 7.6E-17 1.6E-21 183.7 36.4 190 811-1004 300-503 (563)
44 cd03272 ABC_SMC3_euk Eukaryoti 99.8 2.7E-18 5.8E-23 175.8 14.1 137 23-161 1-148 (243)
45 KOG0933 Structural maintenance 99.7 7E-11 1.5E-15 130.6 66.8 174 186-359 171-354 (1174)
46 TIGR00611 recf recF protein. A 99.7 8.6E-17 1.9E-21 170.9 20.4 142 21-175 1-142 (365)
47 COG1195 RecF Recombinational D 99.7 2.1E-16 4.6E-21 160.7 20.9 141 21-175 1-141 (363)
48 cd03239 ABC_SMC_head The struc 99.7 2.6E-17 5.6E-22 156.2 8.2 78 23-100 1-82 (178)
49 PHA02562 46 endonuclease subun 99.7 1.3E-13 2.9E-18 160.7 39.7 175 814-1004 353-537 (562)
50 PF13555 AAA_29: P-loop contai 99.6 2.3E-16 5.1E-21 114.8 5.8 49 23-71 1-51 (62)
51 PF13476 AAA_23: AAA domain; P 99.6 6.5E-16 1.4E-20 154.6 9.5 75 25-99 1-81 (202)
52 cd03276 ABC_SMC6_euk Eukaryoti 99.6 7.5E-16 1.6E-20 149.6 9.3 79 23-101 1-79 (198)
53 KOG0979 Structural maintenance 99.6 5E-09 1.1E-13 117.0 60.3 206 155-360 140-351 (1072)
54 PRK02224 chromosome segregatio 99.6 8.4E-09 1.8E-13 127.1 68.1 153 839-1004 690-854 (880)
55 cd03240 ABC_Rad50 The catalyti 99.5 2.8E-14 6E-19 139.6 10.8 91 23-114 1-93 (204)
56 cd03279 ABC_sbcCD SbcCD and ot 99.5 2.5E-14 5.4E-19 141.9 9.8 90 21-112 1-95 (213)
57 KOG0018 Structural maintenance 99.5 3.9E-09 8.4E-14 118.5 50.1 185 178-362 147-338 (1141)
58 COG3096 MukB Uncharacterized p 99.5 1.7E-07 3.7E-12 100.3 67.0 49 19-67 3-51 (1480)
59 KOG0161 Myosin class II heavy 99.5 1E-06 2.2E-11 109.2 69.7 16 59-74 690-705 (1930)
60 KOG0161 Myosin class II heavy 99.4 3.4E-06 7.3E-11 104.8 66.2 11 152-162 806-816 (1930)
61 cd03278 ABC_SMC_barmotin Barmo 99.4 9.5E-13 2.1E-17 127.8 8.4 78 23-100 1-85 (197)
62 PRK04863 mukB cell division pr 99.3 3E-06 6.5E-11 105.2 63.5 70 161-236 276-345 (1486)
63 PRK03918 chromosome segregatio 99.3 1.7E-05 3.7E-10 98.5 68.5 114 882-1004 739-854 (880)
64 cd03277 ABC_SMC5_euk Eukaryoti 99.3 9E-12 1.9E-16 122.4 10.2 107 919-1025 107-213 (213)
65 cd03274 ABC_SMC4_euk Eukaryoti 99.3 9.4E-12 2E-16 122.4 8.1 78 21-99 1-85 (212)
66 COG3950 Predicted ATP-binding 99.1 2E-11 4.4E-16 119.3 3.3 51 21-71 1-52 (440)
67 PRK04778 septation ring format 99.1 5E-05 1.1E-09 87.3 53.4 174 702-895 350-526 (569)
68 cd03227 ABC_Class2 ABC-type Cl 99.0 2.3E-10 5E-15 107.8 5.9 69 25-97 1-71 (162)
69 PF12128 DUF3584: Protein of u 99.0 0.00038 8.3E-09 87.7 64.6 38 38-76 13-50 (1201)
70 TIGR00606 rad50 rad50. This fa 99.0 0.00045 9.8E-09 88.3 65.0 163 840-1004 1094-1270(1311)
71 PF13166 AAA_13: AAA domain 99.0 4.8E-07 1E-11 109.0 32.1 146 844-1004 421-571 (712)
72 PRK01156 chromosome segregatio 98.9 0.00081 1.8E-08 83.3 67.7 70 935-1004 798-870 (895)
73 cd03276 ABC_SMC6_euk Eukaryoti 98.9 1.2E-08 2.7E-13 99.3 10.2 91 935-1026 106-196 (198)
74 PF11398 DUF2813: Protein of u 98.8 9.4E-09 2E-13 107.3 9.1 61 21-84 1-61 (373)
75 KOG4674 Uncharacterized conser 98.7 0.0031 6.7E-08 78.0 61.8 30 632-661 1244-1273(1822)
76 COG5293 Predicted ATPase [Gene 98.7 0.00013 2.8E-09 74.7 31.6 35 38-72 20-65 (591)
77 PF04310 MukB: MukB N-terminal 98.6 9.4E-08 2E-12 86.7 8.0 89 20-110 4-105 (227)
78 COG3593 Predicted ATP-dependen 98.6 3.5E-08 7.5E-13 108.0 5.5 63 21-85 1-63 (581)
79 COG1106 Predicted ATPases [Gen 98.6 3.2E-08 6.9E-13 102.5 4.2 50 22-72 1-51 (371)
80 PF13175 AAA_15: AAA ATPase do 98.6 4.5E-08 9.8E-13 110.4 5.2 70 933-1003 336-411 (415)
81 PF00261 Tropomyosin: Tropomyo 98.6 0.00022 4.7E-09 71.6 30.5 228 187-426 4-234 (237)
82 TIGR00611 recf recF protein. A 98.5 4.9E-06 1.1E-10 89.2 19.1 145 863-1019 179-358 (365)
83 PF00261 Tropomyosin: Tropomyo 98.5 9.3E-05 2E-09 74.2 27.0 41 622-662 6-46 (237)
84 cd03278 ABC_SMC_barmotin Barmo 98.5 1.8E-07 4E-12 91.0 7.3 76 935-1014 110-185 (197)
85 COG4637 Predicted ATPase [Gene 98.5 4.8E-08 1E-12 95.3 2.6 46 21-67 1-46 (373)
86 cd03239 ABC_SMC_head The struc 98.5 2.6E-07 5.7E-12 88.0 7.6 64 939-1004 95-158 (178)
87 PF13166 AAA_13: AAA domain 98.5 0.00017 3.8E-09 87.1 32.1 42 30-71 1-44 (712)
88 PF10174 Cast: RIM-binding pro 98.4 0.01 2.2E-07 69.0 59.9 137 284-420 229-374 (775)
89 cd03275 ABC_SMC1_euk Eukaryoti 98.4 5E-07 1.1E-11 92.2 7.2 76 936-1014 153-228 (247)
90 COG3910 Predicted ATPase [Gene 98.4 2.8E-07 6.1E-12 82.7 4.1 39 38-76 32-70 (233)
91 COG1126 GlnQ ABC-type polar am 98.3 1E-06 2.2E-11 81.8 6.8 63 936-1004 134-196 (240)
92 cd00267 ABC_ATPase ABC (ATP-bi 98.3 1.3E-06 2.9E-11 82.3 7.1 60 939-1004 81-140 (157)
93 cd03273 ABC_SMC2_euk Eukaryoti 98.3 1.3E-06 2.8E-11 89.6 7.6 65 936-1003 164-228 (251)
94 PRK00064 recF recombination pr 98.3 2.7E-05 5.8E-10 83.9 17.9 155 838-1004 150-339 (361)
95 KOG4674 Uncharacterized conser 98.3 0.032 6.9E-07 69.5 67.3 34 324-357 388-421 (1822)
96 cd03227 ABC_Class2 ABC-type Cl 98.3 2.4E-06 5.2E-11 80.6 7.9 65 938-1004 77-141 (162)
97 COG4604 CeuD ABC-type enteroch 98.3 8.8E-07 1.9E-11 80.4 4.3 43 26-68 2-52 (252)
98 cd03241 ABC_RecN RecN ATPase i 98.3 3.4E-06 7.4E-11 87.6 9.3 81 920-1004 153-233 (276)
99 COG3840 ThiQ ABC-type thiamine 98.2 2.3E-06 5.1E-11 76.6 6.5 63 936-1003 127-189 (231)
100 cd03272 ABC_SMC3_euk Eukaryoti 98.2 2.6E-06 5.7E-11 87.3 7.9 84 935-1022 155-238 (243)
101 cd03240 ABC_Rad50 The catalyti 98.2 2.6E-06 5.6E-11 83.6 7.4 69 935-1004 112-183 (204)
102 COG1121 ZnuC ABC-type Mn/Zn tr 98.2 2.8E-06 6E-11 83.2 7.3 73 935-1013 136-208 (254)
103 PF07888 CALCOCO1: Calcium bin 98.2 0.017 3.7E-07 63.1 37.1 15 959-973 498-512 (546)
104 COG4987 CydC ABC-type transpor 98.2 3.5E-06 7.5E-11 89.5 7.7 78 938-1025 474-551 (573)
105 cd03274 ABC_SMC4_euk Eukaryoti 98.2 3.2E-06 7E-11 83.4 7.1 79 936-1018 125-203 (212)
106 PF13558 SbcCD_C: Putative exo 98.2 2.5E-06 5.5E-11 70.2 5.3 52 935-986 29-89 (90)
107 COG1122 CbiO ABC-type cobalt t 98.2 1.7E-06 3.8E-11 85.3 5.0 66 934-1004 134-199 (235)
108 PF07888 CALCOCO1: Calcium bin 98.2 0.014 2.9E-07 63.9 34.2 22 855-876 432-453 (546)
109 KOG0971 Microtubule-associated 98.2 0.018 3.9E-07 64.8 35.3 40 754-793 401-440 (1243)
110 KOG0971 Microtubule-associated 98.2 0.019 4.1E-07 64.7 35.4 15 622-636 229-243 (1243)
111 COG0396 sufC Cysteine desulfur 98.2 4.7E-06 1E-10 78.4 7.0 80 939-1026 145-225 (251)
112 cd03231 ABC_CcmA_heme_exporter 98.2 4.1E-06 8.9E-11 82.6 7.1 70 937-1012 124-193 (201)
113 cd03235 ABC_Metallic_Cations A 98.2 4.3E-06 9.2E-11 83.6 7.2 62 937-1004 131-192 (213)
114 COG4674 Uncharacterized ABC-ty 98.1 9E-07 1.9E-11 80.2 2.0 40 25-64 12-52 (249)
115 COG1136 SalX ABC-type antimicr 98.1 4.6E-06 1E-10 80.4 6.8 64 936-1004 140-203 (226)
116 COG4988 CydD ABC-type transpor 98.1 4.8E-06 1.1E-10 90.0 7.6 59 939-1004 457-515 (559)
117 TIGR01166 cbiO cobalt transpor 98.1 4.5E-06 9.6E-11 81.7 6.8 62 937-1004 126-187 (190)
118 cd03225 ABC_cobalt_CbiO_domain 98.1 5E-06 1.1E-10 83.0 7.1 62 937-1004 133-194 (211)
119 PRK14079 recF recombination pr 98.1 0.00025 5.4E-09 76.0 20.2 129 863-1002 170-326 (349)
120 cd03259 ABC_Carb_Solutes_like 98.1 4.5E-06 9.7E-11 83.5 6.3 63 937-1004 129-191 (213)
121 cd03260 ABC_PstB_phosphate_tra 98.1 5.9E-06 1.3E-10 83.6 7.0 61 937-1004 140-200 (227)
122 TIGR02680 conserved hypothetic 98.1 0.091 2E-06 67.3 66.2 79 21-99 2-92 (1353)
123 cd03268 ABC_BcrA_bacitracin_re 98.1 5.4E-06 1.2E-10 82.5 6.6 62 937-1004 125-186 (208)
124 cd03230 ABC_DR_subfamily_A Thi 98.1 7.1E-06 1.5E-10 78.6 7.1 60 939-1004 96-155 (173)
125 cd03293 ABC_NrtD_SsuB_transpor 98.1 5.9E-06 1.3E-10 83.1 6.8 63 937-1004 130-192 (220)
126 cd03269 ABC_putative_ATPase Th 98.1 6.4E-06 1.4E-10 82.2 6.9 62 937-1004 127-188 (210)
127 TIGR00960 3a0501s02 Type II (G 98.1 6.4E-06 1.4E-10 82.6 6.9 62 937-1004 137-198 (216)
128 PF10174 Cast: RIM-binding pro 98.1 0.048 1E-06 63.6 59.9 94 262-357 71-165 (775)
129 PF01576 Myosin_tail_1: Myosin 98.1 7.5E-07 1.6E-11 106.2 0.0 20 626-645 463-482 (859)
130 cd03237 ABC_RNaseL_inhibitor_d 98.1 6.5E-06 1.4E-10 83.5 6.7 63 937-1004 114-176 (246)
131 TIGR02673 FtsE cell division A 98.1 7E-06 1.5E-10 82.2 6.8 62 937-1004 136-197 (214)
132 KOG1029 Endocytic adaptor prot 98.1 0.011 2.3E-07 65.3 30.6 103 320-422 479-582 (1118)
133 cd03229 ABC_Class3 This class 98.1 7.4E-06 1.6E-10 78.9 6.7 61 939-1004 101-161 (178)
134 TIGR02211 LolD_lipo_ex lipopro 98.1 7.2E-06 1.6E-10 82.6 6.8 63 937-1004 140-202 (221)
135 PF05557 MAD: Mitotic checkpoi 98.1 2.9E-05 6.3E-10 92.3 12.9 94 812-908 566-659 (722)
136 PRK11247 ssuB aliphatic sulfon 98.1 7.2E-06 1.6E-10 83.8 6.8 63 937-1004 132-194 (257)
137 cd03214 ABC_Iron-Siderophores_ 98.1 8.7E-06 1.9E-10 78.6 7.0 64 936-1004 95-158 (180)
138 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.1 8.4E-06 1.8E-10 81.8 7.1 62 937-1004 141-202 (224)
139 COG1340 Uncharacterized archae 98.0 0.017 3.8E-07 57.4 30.1 26 838-863 226-251 (294)
140 COG1120 FepC ABC-type cobalami 98.0 5.3E-06 1.2E-10 81.8 5.4 26 43-68 28-53 (258)
141 PRK11629 lolD lipoprotein tran 98.0 7.9E-06 1.7E-10 82.9 6.9 63 937-1004 144-206 (233)
142 cd03226 ABC_cobalt_CbiO_domain 98.0 9.8E-06 2.1E-10 80.4 7.3 62 937-1004 125-186 (205)
143 TIGR01184 ntrCD nitrate transp 98.0 8E-06 1.7E-10 82.5 6.7 63 937-1004 113-175 (230)
144 COG1124 DppF ABC-type dipeptid 98.0 7.5E-06 1.6E-10 78.0 5.9 65 935-1004 138-202 (252)
145 COG4938 Uncharacterized conser 98.0 4.1E-06 8.9E-11 80.3 4.1 46 23-69 2-47 (374)
146 COG0444 DppD ABC-type dipeptid 98.0 6.8E-06 1.5E-10 82.4 5.8 64 936-1004 151-214 (316)
147 cd03232 ABC_PDR_domain2 The pl 98.0 1E-05 2.3E-10 78.9 7.0 61 938-1004 108-168 (192)
148 cd03263 ABC_subfamily_A The AB 98.0 9.5E-06 2.1E-10 81.7 7.0 61 937-1004 132-192 (220)
149 cd03245 ABCC_bacteriocin_expor 98.0 1E-05 2.2E-10 81.5 7.0 77 937-1023 139-215 (220)
150 TIGR01277 thiQ thiamine ABC tr 98.0 9.8E-06 2.1E-10 80.9 6.9 63 937-1004 127-189 (213)
151 PRK04778 septation ring format 98.0 0.0072 1.6E-07 69.8 31.0 192 227-426 232-434 (569)
152 cd03264 ABC_drug_resistance_li 98.0 1.1E-05 2.3E-10 80.6 7.0 61 937-1004 129-189 (211)
153 PRK14245 phosphate ABC transpo 98.0 1.1E-05 2.4E-10 82.9 7.1 61 937-1004 145-205 (250)
154 cd03266 ABC_NatA_sodium_export 98.0 1E-05 2.2E-10 81.4 6.7 62 937-1004 135-196 (218)
155 COG4559 ABC-type hemin transpo 98.0 6.6E-06 1.4E-10 76.0 4.7 68 935-1004 132-201 (259)
156 cd03246 ABCC_Protease_Secretio 98.0 1.3E-05 2.7E-10 76.9 7.0 60 939-1004 97-156 (173)
157 cd03216 ABC_Carb_Monos_I This 98.0 1.4E-05 3.1E-10 75.4 7.2 60 939-1004 83-142 (163)
158 cd03256 ABC_PhnC_transporter A 98.0 1.1E-05 2.4E-10 82.6 6.9 63 937-1004 143-205 (241)
159 cd03262 ABC_HisP_GlnQ_permease 98.0 1.2E-05 2.6E-10 80.5 7.0 62 937-1004 134-195 (213)
160 cd03298 ABC_ThiQ_thiamine_tran 98.0 1.2E-05 2.7E-10 80.2 7.0 63 937-1004 127-189 (211)
161 TIGR01189 ccmA heme ABC export 98.0 1.2E-05 2.7E-10 79.1 6.9 62 937-1004 126-187 (198)
162 PRK10584 putative ABC transpor 98.0 1.2E-05 2.6E-10 81.4 6.9 63 937-1004 145-207 (228)
163 cd03233 ABC_PDR_domain1 The pl 98.0 1.3E-05 2.9E-10 78.9 6.9 68 936-1008 116-183 (202)
164 PRK13540 cytochrome c biogenes 98.0 1.4E-05 2.9E-10 78.9 7.0 62 937-1004 126-187 (200)
165 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.0 1.1E-05 2.3E-10 81.2 6.4 63 937-1004 139-201 (218)
166 cd03248 ABCC_TAP TAP, the Tran 98.0 1.4E-05 3E-10 80.9 7.1 61 937-1004 149-209 (226)
167 PRK10619 histidine/lysine/argi 98.0 1.4E-05 2.9E-10 82.6 7.2 62 937-1004 151-212 (257)
168 COG5293 Predicted ATPase [Gene 98.0 0.032 6.9E-07 57.9 30.9 129 864-1003 416-554 (591)
169 PRK13543 cytochrome c biogenes 98.0 1.6E-05 3.6E-10 79.2 7.5 62 937-1004 136-197 (214)
170 cd03261 ABC_Org_Solvent_Resist 98.0 1.1E-05 2.4E-10 82.1 6.4 63 937-1004 135-197 (235)
171 PRK11248 tauB taurine transpor 98.0 1.2E-05 2.7E-10 82.4 6.7 63 937-1004 127-189 (255)
172 cd03219 ABC_Mj1267_LivG_branch 98.0 1.3E-05 2.8E-10 81.8 6.8 62 937-1004 142-203 (236)
173 cd03292 ABC_FtsE_transporter F 98.0 1.4E-05 3.1E-10 80.1 6.9 62 937-1004 135-196 (214)
174 PRK14247 phosphate ABC transpo 98.0 1.4E-05 3E-10 82.2 7.0 61 937-1004 145-205 (250)
175 cd03215 ABC_Carb_Monos_II This 98.0 1.5E-05 3.2E-10 77.2 6.8 60 939-1004 105-164 (182)
176 PRK14242 phosphate transporter 98.0 1.4E-05 3.1E-10 82.4 7.0 61 937-1004 148-208 (253)
177 PRK14270 phosphate ABC transpo 98.0 1.5E-05 3.2E-10 82.0 7.2 62 936-1004 145-206 (251)
178 cd03265 ABC_DrrA DrrA is the A 98.0 1.4E-05 3E-10 80.4 6.8 63 937-1004 130-192 (220)
179 PRK13538 cytochrome c biogenes 98.0 1.4E-05 3.1E-10 79.0 6.8 62 937-1004 128-189 (204)
180 PRK11614 livF leucine/isoleuci 98.0 1.4E-05 3E-10 81.4 6.9 62 937-1004 136-197 (237)
181 TIGR03864 PQQ_ABC_ATP ABC tran 98.0 1.3E-05 2.8E-10 81.6 6.6 63 937-1004 131-193 (236)
182 cd03297 ABC_ModC_molybdenum_tr 98.0 1.3E-05 2.9E-10 80.1 6.6 63 937-1004 130-192 (214)
183 PRK14268 phosphate ABC transpo 98.0 1.5E-05 3.2E-10 82.3 7.1 61 937-1004 153-213 (258)
184 TIGR00972 3a0107s01c2 phosphat 98.0 1.6E-05 3.4E-10 81.6 7.2 62 936-1004 142-203 (247)
185 cd03213 ABCG_EPDR ABCG transpo 98.0 1.8E-05 3.9E-10 77.4 7.2 61 938-1004 111-171 (194)
186 cd03228 ABCC_MRP_Like The MRP 98.0 1.8E-05 3.8E-10 75.7 7.0 59 939-1004 97-155 (171)
187 COG1131 CcmA ABC-type multidru 98.0 1.4E-05 3.1E-10 83.0 6.8 81 936-1023 134-214 (293)
188 PRK14262 phosphate ABC transpo 98.0 1.5E-05 3.3E-10 81.9 7.0 62 936-1004 144-205 (250)
189 cd03238 ABC_UvrA The excision 97.9 2.2E-05 4.7E-10 74.3 7.3 82 936-1024 85-166 (176)
190 PRK15079 oligopeptide ABC tran 97.9 1.1E-05 2.3E-10 85.6 5.9 63 937-1004 160-222 (331)
191 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.9 1.6E-05 3.5E-10 81.1 7.0 61 937-1004 138-198 (238)
192 cd03254 ABCC_Glucan_exporter_l 97.9 1.7E-05 3.6E-10 80.5 7.1 62 936-1004 137-198 (229)
193 TIGR03608 L_ocin_972_ABC putat 97.9 1.7E-05 3.8E-10 78.9 7.0 62 937-1004 133-194 (206)
194 cd03224 ABC_TM1139_LivF_branch 97.9 1.5E-05 3.3E-10 80.4 6.7 62 937-1004 131-192 (222)
195 PRK13539 cytochrome c biogenes 97.9 2.8E-05 6E-10 77.1 8.4 62 937-1004 126-187 (207)
196 PRK14241 phosphate transporter 97.9 1.7E-05 3.6E-10 81.9 7.1 62 936-1004 146-207 (258)
197 cd03222 ABC_RNaseL_inhibitor T 97.9 2E-05 4.4E-10 74.5 7.0 61 939-1004 72-132 (177)
198 PRK11264 putative amino-acid A 97.9 1.7E-05 3.7E-10 81.6 7.1 62 937-1004 143-204 (250)
199 cd03296 ABC_CysA_sulfate_impor 97.9 1.4E-05 3.1E-10 81.4 6.5 63 937-1004 135-197 (239)
200 PRK14259 phosphate ABC transpo 97.9 1.7E-05 3.7E-10 82.2 7.1 61 937-1004 153-213 (269)
201 cd03267 ABC_NatA_like Similar 97.9 1.7E-05 3.6E-10 80.5 6.9 63 937-1004 152-214 (236)
202 PRK10908 cell division protein 97.9 1.8E-05 3.8E-10 79.7 7.1 62 937-1004 136-197 (222)
203 PRK10771 thiQ thiamine transpo 97.9 1.7E-05 3.7E-10 80.5 6.9 63 937-1004 128-190 (232)
204 PRK14269 phosphate ABC transpo 97.9 1.7E-05 3.8E-10 81.2 7.1 61 937-1004 141-201 (246)
205 TIGR03771 anch_rpt_ABC anchore 97.9 1.8E-05 3.8E-10 79.5 6.9 62 937-1004 112-173 (223)
206 TIGR02315 ABC_phnC phosphonate 97.9 1.4E-05 3.1E-10 81.9 6.3 63 937-1004 144-206 (243)
207 PRK11124 artP arginine transpo 97.9 1.7E-05 3.8E-10 81.0 7.0 62 937-1004 140-201 (242)
208 cd03218 ABC_YhbG The ABC trans 97.9 1.7E-05 3.8E-10 80.6 6.9 62 937-1004 132-193 (232)
209 cd03258 ABC_MetN_methionine_tr 97.9 1.6E-05 3.4E-10 80.9 6.6 63 937-1004 139-201 (233)
210 cd03257 ABC_NikE_OppD_transpor 97.9 1.6E-05 3.5E-10 80.7 6.7 63 937-1004 144-206 (228)
211 PRK13651 cobalt transporter AT 97.9 1.9E-05 4.1E-10 82.9 7.2 62 937-1004 164-225 (305)
212 cd03252 ABCC_Hemolysin The ABC 97.9 2.1E-05 4.5E-10 80.2 7.4 62 936-1004 136-197 (237)
213 PRK14273 phosphate ABC transpo 97.9 1.9E-05 4.2E-10 81.4 7.1 62 936-1004 148-209 (254)
214 TIGR03411 urea_trans_UrtD urea 97.9 1.8E-05 3.9E-10 81.0 6.9 61 937-1004 142-202 (242)
215 PRK11831 putative ABC transpor 97.9 1.6E-05 3.5E-10 82.4 6.6 63 937-1004 142-204 (269)
216 PRK14274 phosphate ABC transpo 97.9 1.9E-05 4E-10 81.7 7.0 61 937-1004 154-214 (259)
217 TIGR03740 galliderm_ABC gallid 97.9 1.8E-05 3.8E-10 79.8 6.7 62 937-1004 123-184 (223)
218 PRK14240 phosphate transporter 97.9 2E-05 4.3E-10 81.1 7.2 61 937-1004 145-205 (250)
219 cd03244 ABCC_MRP_domain2 Domai 97.9 2E-05 4.4E-10 79.4 7.1 61 937-1004 138-198 (221)
220 PRK09493 glnQ glutamine ABC tr 97.9 1.9E-05 4.1E-10 80.7 6.8 62 937-1004 135-196 (240)
221 TIGR01978 sufC FeS assembly AT 97.9 1.8E-05 4E-10 81.1 6.8 61 938-1004 144-204 (243)
222 PRK14244 phosphate ABC transpo 97.9 2E-05 4.4E-10 81.0 7.1 61 937-1004 148-208 (251)
223 PRK14250 phosphate ABC transpo 97.9 2.1E-05 4.6E-10 80.2 7.2 63 937-1004 130-192 (241)
224 PRK15056 manganese/iron transp 97.9 2.2E-05 4.7E-10 81.6 7.3 62 937-1004 141-202 (272)
225 cd03270 ABC_UvrA_I The excisio 97.9 2.4E-05 5.1E-10 78.5 7.3 63 937-1004 136-199 (226)
226 PRK13643 cbiO cobalt transport 97.9 2.3E-05 5E-10 82.0 7.5 62 937-1004 143-204 (288)
227 cd03251 ABCC_MsbA MsbA is an e 97.9 2.2E-05 4.7E-10 80.0 7.1 78 937-1024 137-214 (234)
228 PRK13631 cbiO cobalt transport 97.9 2.2E-05 4.8E-10 82.9 7.4 62 937-1004 175-236 (320)
229 TIGR02770 nickel_nikD nickel i 97.9 1.9E-05 4.2E-10 79.9 6.7 63 937-1004 124-186 (230)
230 cd03217 ABC_FeS_Assembly ABC-t 97.9 2.3E-05 5E-10 77.1 7.1 62 937-1004 103-164 (200)
231 PRK11231 fecE iron-dicitrate t 97.9 2.1E-05 4.6E-10 81.0 7.1 62 937-1004 137-198 (255)
232 PRK14239 phosphate transporter 97.9 2.1E-05 4.4E-10 81.2 7.0 61 937-1004 147-207 (252)
233 PRK13546 teichoic acids export 97.9 2.4E-05 5.2E-10 80.2 7.4 62 937-1004 142-203 (264)
234 PRK14238 phosphate transporter 97.9 2.2E-05 4.8E-10 81.4 7.3 61 937-1004 166-226 (271)
235 cd03247 ABCC_cytochrome_bd The 97.9 2.6E-05 5.6E-10 75.2 7.2 62 936-1004 96-157 (178)
236 PRK14271 phosphate ABC transpo 97.9 2.2E-05 4.7E-10 81.6 7.1 61 937-1004 162-222 (276)
237 TIGR02324 CP_lyasePhnL phospho 97.9 2.4E-05 5.2E-10 79.0 7.3 62 937-1004 148-209 (224)
238 PRK11022 dppD dipeptide transp 97.9 1.6E-05 3.5E-10 84.3 6.3 64 936-1004 151-214 (326)
239 TIGR01188 drrA daunorubicin re 97.9 2.2E-05 4.7E-10 83.0 7.2 62 937-1004 123-184 (302)
240 COG4694 Uncharacterized protei 97.9 0.0012 2.6E-08 69.8 19.4 146 841-1003 446-596 (758)
241 PRK13638 cbiO cobalt transport 97.9 2.3E-05 4.9E-10 81.5 7.2 62 937-1004 135-196 (271)
242 PRK13637 cbiO cobalt transport 97.9 2.3E-05 4.9E-10 82.0 7.2 63 937-1004 143-205 (287)
243 TIGR02323 CP_lyasePhnK phospho 97.9 2E-05 4.4E-10 81.2 6.7 63 937-1004 147-209 (253)
244 cd03301 ABC_MalK_N The N-termi 97.9 2.1E-05 4.6E-10 78.7 6.7 63 937-1004 129-191 (213)
245 PRK10575 iron-hydroxamate tran 97.9 2.3E-05 5E-10 81.2 7.0 63 937-1004 146-208 (265)
246 PRK14254 phosphate ABC transpo 97.9 2.5E-05 5.3E-10 81.5 7.2 61 937-1004 179-239 (285)
247 PRK15112 antimicrobial peptide 97.9 2E-05 4.4E-10 81.6 6.6 63 937-1004 148-210 (267)
248 PRK10744 pstB phosphate transp 97.9 2.5E-05 5.4E-10 80.7 7.1 61 937-1004 155-215 (260)
249 PRK14253 phosphate ABC transpo 97.9 2.7E-05 5.8E-10 80.1 7.3 62 936-1004 143-204 (249)
250 TIGR01288 nodI ATP-binding ABC 97.9 2.4E-05 5.1E-10 82.7 7.0 62 937-1004 134-195 (303)
251 PRK14235 phosphate transporter 97.9 2.6E-05 5.7E-10 80.8 7.2 61 937-1004 162-222 (267)
252 PRK13541 cytochrome c biogenes 97.9 2.9E-05 6.2E-10 76.2 7.1 62 937-1004 122-183 (195)
253 PRK09544 znuC high-affinity zi 97.9 2.3E-05 5E-10 80.0 6.7 63 937-1004 119-181 (251)
254 PRK14258 phosphate ABC transpo 97.9 2.8E-05 6E-10 80.4 7.3 63 937-1004 149-211 (261)
255 PRK13649 cbiO cobalt transport 97.9 2.5E-05 5.4E-10 81.8 7.1 62 937-1004 144-205 (280)
256 cd03223 ABCD_peroxisomal_ALDP 97.9 3.3E-05 7.1E-10 73.2 7.2 60 936-1004 89-148 (166)
257 cd03294 ABC_Pro_Gly_Bertaine T 97.9 2.5E-05 5.5E-10 80.9 6.9 63 937-1004 159-221 (269)
258 PRK13646 cbiO cobalt transport 97.9 2.7E-05 5.9E-10 81.4 7.2 63 937-1004 144-206 (286)
259 PRK14265 phosphate ABC transpo 97.9 2.9E-05 6.3E-10 80.6 7.4 61 937-1004 160-220 (274)
260 PRK14275 phosphate ABC transpo 97.9 2.7E-05 5.7E-10 81.4 7.1 61 937-1004 181-241 (286)
261 PRK14255 phosphate ABC transpo 97.9 2.7E-05 5.8E-10 80.2 7.1 62 936-1004 146-207 (252)
262 PRK14272 phosphate ABC transpo 97.9 2.7E-05 5.9E-10 80.3 7.1 62 936-1004 146-207 (252)
263 PRK14261 phosphate ABC transpo 97.9 2.5E-05 5.5E-10 80.4 6.9 61 937-1004 148-208 (253)
264 COG1121 ZnuC ABC-type Mn/Zn tr 97.9 1.3E-05 2.8E-10 78.6 4.3 116 37-156 23-146 (254)
265 PRK13645 cbiO cobalt transport 97.9 2.6E-05 5.6E-10 81.9 7.0 63 937-1004 149-211 (289)
266 TIGR01187 potA spermidine/putr 97.9 2.4E-05 5.3E-10 83.1 6.9 63 937-1004 99-161 (325)
267 PRK14267 phosphate ABC transpo 97.9 2.5E-05 5.5E-10 80.5 6.8 62 936-1004 147-208 (253)
268 PRK11308 dppF dipeptide transp 97.9 2.5E-05 5.5E-10 82.8 6.9 64 936-1004 152-215 (327)
269 PRK13545 tagH teichoic acids e 97.9 2.9E-05 6.3E-10 84.9 7.4 62 937-1004 142-203 (549)
270 PRK10247 putative ABC transpor 97.9 2.8E-05 6.1E-10 78.3 6.9 63 937-1004 136-198 (225)
271 PRK14243 phosphate transporter 97.9 3.1E-05 6.7E-10 80.1 7.3 61 937-1004 150-210 (264)
272 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 3.4E-05 7.4E-10 70.9 6.8 57 939-1004 71-127 (144)
273 PRK14264 phosphate ABC transpo 97.9 2.9E-05 6.2E-10 82.0 7.1 61 937-1004 199-259 (305)
274 cd03295 ABC_OpuCA_Osmoprotecti 97.9 2.4E-05 5.1E-10 80.0 6.3 63 937-1004 134-196 (242)
275 TIGR02314 ABC_MetN D-methionin 97.9 2.7E-05 5.8E-10 82.7 6.8 63 937-1004 139-201 (343)
276 TIGR03410 urea_trans_UrtE urea 97.8 2.9E-05 6.2E-10 78.8 6.8 63 937-1004 130-192 (230)
277 PRK14263 phosphate ABC transpo 97.8 3.5E-05 7.5E-10 79.4 7.5 61 937-1004 148-208 (261)
278 PRK14248 phosphate ABC transpo 97.8 2.8E-05 6.1E-10 80.7 6.9 61 937-1004 163-223 (268)
279 PRK13548 hmuV hemin importer A 97.8 3.3E-05 7.2E-10 79.5 7.3 67 937-1004 133-201 (258)
280 TIGR01186 proV glycine betaine 97.8 2.8E-05 6E-10 83.0 6.9 62 938-1004 129-190 (363)
281 PRK11637 AmiB activator; Provi 97.8 0.01 2.2E-07 66.1 27.4 75 618-692 48-122 (428)
282 cd03369 ABCC_NFT1 Domain 2 of 97.8 3.7E-05 8E-10 76.4 7.4 61 937-1004 124-184 (207)
283 TIGR03005 ectoine_ehuA ectoine 97.8 2.9E-05 6.4E-10 79.9 6.8 63 937-1004 145-207 (252)
284 PRK11153 metN DL-methionine tr 97.8 2.7E-05 6E-10 83.4 6.8 63 937-1004 139-201 (343)
285 cd03234 ABCG_White The White s 97.8 3.8E-05 8.3E-10 77.5 7.5 63 936-1004 141-203 (226)
286 cd03253 ABCC_ATM1_transporter 97.8 3.3E-05 7.1E-10 78.8 7.1 61 937-1004 136-196 (236)
287 PRK11300 livG leucine/isoleuci 97.8 3.1E-05 6.8E-10 80.0 7.0 63 937-1004 152-214 (255)
288 PRK14266 phosphate ABC transpo 97.8 2.7E-05 5.9E-10 80.1 6.5 61 937-1004 145-205 (250)
289 PRK14251 phosphate ABC transpo 97.8 3.2E-05 7E-10 79.6 7.0 61 937-1004 146-206 (251)
290 PRK13536 nodulation factor exp 97.8 2.3E-05 5E-10 83.4 6.0 61 5-67 27-91 (340)
291 PRK15093 antimicrobial peptide 97.8 2.3E-05 4.9E-10 83.6 6.0 64 936-1004 156-219 (330)
292 PRK11650 ugpC glycerol-3-phosp 97.8 2E-05 4.3E-10 84.5 5.5 63 937-1004 133-195 (356)
293 PRK09473 oppD oligopeptide tra 97.8 2.4E-05 5.2E-10 83.1 6.1 64 936-1004 159-222 (330)
294 COG1116 TauB ABC-type nitrate/ 97.8 2.6E-05 5.6E-10 75.3 5.6 65 935-1004 127-191 (248)
295 PRK09580 sufC cysteine desulfu 97.8 3.7E-05 7.9E-10 79.1 7.3 61 938-1004 145-205 (248)
296 TIGR03873 F420-0_ABC_ATP propo 97.8 3.6E-05 7.7E-10 79.4 7.2 62 937-1004 136-197 (256)
297 COG4598 HisP ABC-type histidin 97.8 3.7E-05 7.9E-10 68.8 6.0 76 937-1022 151-228 (256)
298 PRK10070 glycine betaine trans 97.8 3.2E-05 6.9E-10 83.7 6.9 63 937-1004 163-225 (400)
299 PRK10253 iron-enterobactin tra 97.8 3.8E-05 8.3E-10 79.5 7.3 63 937-1004 142-204 (265)
300 CHL00131 ycf16 sulfate ABC tra 97.8 3.7E-05 7.9E-10 79.3 7.0 60 939-1004 152-211 (252)
301 PRK13634 cbiO cobalt transport 97.8 3.8E-05 8.2E-10 80.5 7.1 63 937-1004 144-206 (290)
302 PRK10418 nikD nickel transport 97.8 3.5E-05 7.7E-10 79.3 6.8 63 937-1004 139-201 (254)
303 COG1340 Uncharacterized archae 97.8 0.047 1E-06 54.5 31.7 16 891-906 266-281 (294)
304 PRK13641 cbiO cobalt transport 97.8 4.4E-05 9.4E-10 80.0 7.5 62 937-1004 144-205 (287)
305 PRK11701 phnK phosphonate C-P 97.8 3.9E-05 8.4E-10 79.2 7.0 63 937-1004 150-212 (258)
306 PRK13409 putative ATPase RIL; 97.8 2.5E-05 5.3E-10 89.9 6.1 63 937-1004 452-514 (590)
307 PRK13647 cbiO cobalt transport 97.8 4.1E-05 8.8E-10 79.5 7.1 62 937-1004 137-198 (274)
308 COG1120 FepC ABC-type cobalami 97.8 3E-05 6.4E-10 76.6 5.7 74 935-1013 135-208 (258)
309 PRK13648 cbiO cobalt transport 97.8 4.1E-05 9E-10 79.5 7.2 63 937-1004 141-203 (269)
310 PRK14256 phosphate ABC transpo 97.8 3.9E-05 8.5E-10 79.0 6.9 62 936-1004 146-207 (252)
311 PRK14260 phosphate ABC transpo 97.8 3.9E-05 8.6E-10 79.2 7.0 61 937-1004 149-209 (259)
312 PRK13639 cbiO cobalt transport 97.8 4E-05 8.7E-10 79.7 7.0 62 937-1004 136-197 (275)
313 COG4619 ABC-type uncharacteriz 97.8 4.4E-05 9.6E-10 67.5 6.0 65 935-1004 130-194 (223)
314 PRK03695 vitamin B12-transport 97.8 4.5E-05 9.8E-10 78.0 7.3 66 937-1004 125-193 (248)
315 PRK14252 phosphate ABC transpo 97.8 4.4E-05 9.5E-10 79.2 7.2 61 937-1004 160-220 (265)
316 PRK13632 cbiO cobalt transport 97.8 4E-05 8.6E-10 79.6 6.9 63 937-1004 141-203 (271)
317 cd03271 ABC_UvrA_II The excisi 97.8 5.6E-05 1.2E-09 76.4 7.7 65 937-1004 168-232 (261)
318 PRK10419 nikE nickel transport 97.8 4.4E-05 9.4E-10 79.1 7.1 63 937-1004 150-212 (268)
319 TIGR03269 met_CoM_red_A2 methy 97.8 3.1E-05 6.7E-10 89.2 6.7 64 936-1004 166-229 (520)
320 PRK15439 autoinducer 2 ABC tra 97.8 3.8E-05 8.2E-10 87.9 7.3 62 937-1004 402-463 (510)
321 PRK14237 phosphate transporter 97.8 4.5E-05 9.8E-10 79.0 7.2 61 937-1004 162-222 (267)
322 PRK13650 cbiO cobalt transport 97.8 4.3E-05 9.4E-10 79.6 7.1 63 937-1004 139-201 (279)
323 PF09726 Macoilin: Transmembra 97.8 0.018 3.8E-07 66.8 28.4 36 837-872 619-654 (697)
324 PRK14236 phosphate transporter 97.8 4.5E-05 9.8E-10 79.3 7.1 61 937-1004 167-227 (272)
325 PRK09452 potA putrescine/sperm 97.8 2.9E-05 6.3E-10 83.6 5.8 63 937-1004 143-205 (375)
326 PRK10895 lipopolysaccharide AB 97.8 4.3E-05 9.3E-10 78.1 6.8 62 937-1004 136-197 (241)
327 PRK14249 phosphate ABC transpo 97.8 5E-05 1.1E-09 78.1 7.3 62 936-1004 145-206 (251)
328 COG1119 ModF ABC-type molybden 97.8 6E-05 1.3E-09 72.1 7.1 65 936-1004 169-233 (257)
329 PRK13536 nodulation factor exp 97.8 4.7E-05 1E-09 81.1 7.1 62 937-1004 171-232 (340)
330 KOG0977 Nuclear envelope prote 97.8 0.1 2.3E-06 57.3 32.5 64 814-877 298-365 (546)
331 PRK13547 hmuV hemin importer A 97.8 5E-05 1.1E-09 78.5 7.1 68 936-1004 143-215 (272)
332 COG4559 ABC-type hemin transpo 97.8 7.1E-05 1.5E-09 69.4 7.1 43 26-68 9-52 (259)
333 COG4525 TauB ABC-type taurine 97.8 4.4E-05 9.5E-10 69.5 5.6 65 935-1004 129-193 (259)
334 TIGR02633 xylG D-xylose ABC tr 97.8 4.4E-05 9.4E-10 87.6 7.2 62 937-1004 402-463 (500)
335 TIGR03258 PhnT 2-aminoethylpho 97.8 3.1E-05 6.8E-10 83.0 5.6 65 936-1004 135-199 (362)
336 cd03300 ABC_PotA_N PotA is an 97.8 4.7E-05 1E-09 77.2 6.6 63 937-1004 129-191 (232)
337 PRK13537 nodulation ABC transp 97.8 5E-05 1.1E-09 80.0 7.0 62 937-1004 137-198 (306)
338 PRK11000 maltose/maltodextrin 97.8 4.1E-05 8.8E-10 82.8 6.5 63 937-1004 132-194 (369)
339 TIGR02142 modC_ABC molybdenum 97.8 4.6E-05 1E-09 82.2 6.8 63 937-1004 130-192 (354)
340 COG4133 CcmA ABC-type transpor 97.8 2.4E-05 5.2E-10 71.1 3.8 66 935-1006 127-192 (209)
341 TIGR02769 nickel_nikE nickel i 97.8 5.1E-05 1.1E-09 78.6 6.9 63 937-1004 149-211 (265)
342 PRK09984 phosphonate/organopho 97.8 5E-05 1.1E-09 78.6 6.9 63 937-1004 151-213 (262)
343 COG4608 AppF ABC-type oligopep 97.7 4.4E-05 9.5E-10 74.9 5.9 84 935-1026 106-190 (268)
344 cd03279 ABC_sbcCD SbcCD and ot 97.7 6.8E-05 1.5E-09 74.6 7.5 67 936-1004 121-193 (213)
345 PRK10938 putative molybdenum t 97.7 4.1E-05 9E-10 87.5 6.7 63 936-1004 133-195 (490)
346 PRK13642 cbiO cobalt transport 97.7 5.8E-05 1.3E-09 78.6 7.1 63 937-1004 139-201 (277)
347 PRK13644 cbiO cobalt transport 97.7 5.9E-05 1.3E-09 78.3 7.2 62 937-1004 135-196 (274)
348 KOG0977 Nuclear envelope prote 97.7 0.12 2.5E-06 56.9 32.2 68 626-693 108-175 (546)
349 PRK13635 cbiO cobalt transport 97.7 6.1E-05 1.3E-09 78.4 7.2 62 938-1004 140-201 (279)
350 PRK11144 modC molybdate transp 97.7 5.1E-05 1.1E-09 81.7 6.8 63 937-1004 127-189 (352)
351 PRK13633 cobalt transporter AT 97.7 5.7E-05 1.2E-09 78.8 6.9 63 937-1004 143-205 (280)
352 COG1125 OpuBA ABC-type proline 97.7 4.4E-05 9.5E-10 72.9 5.3 64 936-1004 133-196 (309)
353 PRK15177 Vi polysaccharide exp 97.7 5.5E-05 1.2E-09 75.1 6.5 61 937-1004 103-163 (213)
354 PRK14257 phosphate ABC transpo 97.7 6.6E-05 1.4E-09 79.6 7.3 60 938-1004 225-284 (329)
355 PRK11637 AmiB activator; Provi 97.7 0.025 5.3E-07 63.1 27.8 66 622-687 59-124 (428)
356 PRK10938 putative molybdenum t 97.7 4.8E-05 1E-09 87.0 6.6 63 937-1004 400-462 (490)
357 PRK15134 microcin C ABC transp 97.7 4.9E-05 1.1E-09 87.7 6.7 64 936-1004 154-217 (529)
358 KOG0057 Mitochondrial Fe/S clu 97.7 8.4E-05 1.8E-09 79.4 7.7 76 938-1024 487-563 (591)
359 PRK13640 cbiO cobalt transport 97.7 6.7E-05 1.5E-09 78.3 7.1 63 937-1004 142-204 (282)
360 cd03299 ABC_ModC_like Archeal 97.7 6.7E-05 1.5E-09 76.1 6.9 63 937-1004 128-190 (235)
361 PRK10762 D-ribose transporter 97.7 5.7E-05 1.2E-09 86.5 7.1 62 937-1004 394-455 (501)
362 COG1123 ATPase components of v 97.7 4.5E-05 9.7E-10 83.1 5.7 64 936-1004 427-490 (539)
363 COG1117 PstB ABC-type phosphat 97.7 8.4E-05 1.8E-09 69.1 6.5 62 936-1004 147-208 (253)
364 PRK13636 cbiO cobalt transport 97.7 6.8E-05 1.5E-09 78.3 6.9 64 936-1004 139-202 (283)
365 PRK10982 galactose/methyl gala 97.7 6.3E-05 1.4E-09 85.9 7.2 63 936-1004 132-194 (491)
366 TIGR00968 3a0106s01 sulfate AB 97.7 6.8E-05 1.5E-09 76.2 6.7 63 937-1004 129-191 (237)
367 cd03242 ABC_RecF RecF is a rec 97.7 0.00024 5.2E-09 73.5 10.7 80 937-1022 182-267 (270)
368 cd03236 ABC_RNaseL_inhibitor_d 97.7 8.4E-05 1.8E-09 75.7 7.2 62 937-1004 138-199 (255)
369 PRK10851 sulfate/thiosulfate t 97.7 4.7E-05 1E-09 81.6 5.6 63 937-1004 135-197 (353)
370 COG1135 AbcC ABC-type metal io 97.7 6.4E-05 1.4E-09 74.4 5.9 64 936-1004 139-202 (339)
371 cd03291 ABCC_CFTR1 The CFTR su 97.7 9.2E-05 2E-09 76.6 7.4 78 937-1023 158-235 (282)
372 PRK10261 glutathione transport 97.7 4.8E-05 1E-09 89.1 6.0 64 936-1004 461-524 (623)
373 PRK09700 D-allose transporter 97.7 6.8E-05 1.5E-09 86.1 7.2 62 937-1004 408-469 (510)
374 PRK15134 microcin C ABC transp 97.7 4.7E-05 1E-09 87.8 5.8 63 937-1004 424-486 (529)
375 PF05667 DUF812: Protein of un 97.7 0.07 1.5E-06 60.6 30.4 40 630-669 327-366 (594)
376 PRK11288 araG L-arabinose tran 97.7 6.8E-05 1.5E-09 85.8 7.1 62 937-1004 395-456 (501)
377 PRK13549 xylose transporter AT 97.7 7E-05 1.5E-09 85.9 7.2 62 937-1004 404-465 (506)
378 COG1127 Ttg2A ABC-type transpo 97.7 8.7E-05 1.9E-09 70.6 6.4 66 934-1004 141-206 (263)
379 COG1579 Zn-ribbon protein, pos 97.7 0.024 5.3E-07 55.1 22.9 121 620-744 13-133 (239)
380 TIGR02203 MsbA_lipidA lipid A 97.7 6.9E-05 1.5E-09 88.0 7.1 59 939-1004 470-528 (571)
381 PRK13652 cbiO cobalt transport 97.7 9.1E-05 2E-09 77.2 7.1 63 937-1004 136-198 (277)
382 TIGR02633 xylG D-xylose ABC tr 97.7 7.5E-05 1.6E-09 85.7 7.1 62 937-1004 140-201 (500)
383 cd03250 ABCC_MRP_domain1 Domai 97.7 0.00011 2.5E-09 72.7 7.5 62 937-1004 126-188 (204)
384 PRK10982 galactose/methyl gala 97.7 8E-05 1.7E-09 85.1 7.3 62 937-1004 390-451 (491)
385 cd03238 ABC_UvrA The excision 97.7 4.1E-05 8.9E-10 72.4 4.0 28 36-63 13-41 (176)
386 PRK11432 fbpC ferric transport 97.7 5.4E-05 1.2E-09 80.9 5.5 63 937-1004 135-197 (351)
387 KOG0995 Centromere-associated 97.7 0.14 3.1E-06 55.6 34.1 16 843-858 488-503 (581)
388 PRK11288 araG L-arabinose tran 97.6 7.9E-05 1.7E-09 85.3 7.1 62 937-1004 139-200 (501)
389 TIGR03415 ABC_choXWV_ATP choli 97.6 6.8E-05 1.5E-09 80.4 6.1 63 937-1004 163-225 (382)
390 PF06470 SMC_hinge: SMC protei 97.6 5.1E-05 1.1E-09 67.7 4.3 108 450-561 2-111 (120)
391 TIGR03522 GldA_ABC_ATP gliding 97.6 8.8E-05 1.9E-09 78.2 6.8 61 937-1004 132-192 (301)
392 PRK13409 putative ATPase RIL; 97.6 8.7E-05 1.9E-09 85.4 7.2 61 937-1004 211-271 (590)
393 PRK14246 phosphate ABC transpo 97.6 0.0001 2.2E-09 75.8 6.9 61 937-1004 152-212 (257)
394 TIGR03269 met_CoM_red_A2 methy 97.6 7.5E-05 1.6E-09 86.1 6.6 64 936-1004 425-488 (520)
395 TIGR03719 ABC_ABC_ChvD ATP-bin 97.6 6.7E-05 1.5E-09 86.9 6.3 59 937-1004 442-500 (552)
396 KOG0994 Extracellular matrix g 97.6 0.25 5.4E-06 57.7 50.0 50 369-418 1226-1275(1758)
397 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 9.5E-05 2.1E-09 68.0 5.8 33 34-66 16-49 (144)
398 PRK13549 xylose transporter AT 97.6 8.7E-05 1.9E-09 85.1 6.9 62 937-1004 142-203 (506)
399 TIGR03265 PhnT2 putative 2-ami 97.6 9.9E-05 2.1E-09 79.1 6.8 63 937-1004 133-195 (353)
400 cd00267 ABC_ATPase ABC (ATP-bi 97.6 7.8E-05 1.7E-09 70.2 5.4 34 34-67 15-49 (157)
401 cd03288 ABCC_SUR2 The SUR doma 97.6 0.00012 2.6E-09 75.5 7.1 60 938-1004 156-215 (257)
402 PRK13539 cytochrome c biogenes 97.6 8.4E-05 1.8E-09 73.7 5.8 47 20-67 2-52 (207)
403 PRK10261 glutathione transport 97.6 8.3E-05 1.8E-09 87.1 6.7 64 936-1004 166-229 (623)
404 COG1137 YhbG ABC-type (unclass 97.6 0.00015 3.3E-09 66.6 6.7 72 938-1016 139-211 (243)
405 cd03215 ABC_Carb_Monos_II This 97.6 6.9E-05 1.5E-09 72.5 5.0 45 21-67 5-50 (182)
406 cd03264 ABC_drug_resistance_li 97.6 7.1E-05 1.5E-09 74.7 5.2 34 34-67 16-49 (211)
407 TIGR02982 heterocyst_DevA ABC 97.6 0.00011 2.3E-09 73.9 6.5 62 938-1004 141-202 (220)
408 PRK11174 cysteine/glutathione 97.6 0.00011 2.3E-09 86.6 7.4 60 938-1004 485-544 (588)
409 PRK13538 cytochrome c biogenes 97.6 7.6E-05 1.6E-09 73.9 5.3 33 35-67 18-51 (204)
410 PRK15439 autoinducer 2 ABC tra 97.6 0.0001 2.3E-09 84.4 7.2 63 936-1004 138-200 (510)
411 PRK14247 phosphate ABC transpo 97.6 7.3E-05 1.6E-09 76.9 5.3 32 36-67 21-53 (250)
412 TIGR00630 uvra excinuclease AB 97.6 0.00011 2.3E-09 87.8 7.3 63 937-1004 486-549 (924)
413 cd03296 ABC_CysA_sulfate_impor 97.6 8.8E-05 1.9E-09 75.7 5.8 32 36-67 20-52 (239)
414 COG1101 PhnK ABC-type uncharac 97.6 0.00011 2.4E-09 68.3 5.7 72 937-1013 147-218 (263)
415 TIGR02868 CydC thiol reductant 97.6 0.00011 2.4E-09 85.1 7.3 59 939-1004 471-529 (529)
416 PF00005 ABC_tran: ABC transpo 97.6 4.6E-05 1E-09 70.0 3.3 31 37-67 4-35 (137)
417 PRK09536 btuD corrinoid ABC tr 97.6 0.00013 2.9E-09 79.0 7.2 63 936-1004 137-199 (402)
418 PRK09700 D-allose transporter 97.6 0.00011 2.4E-09 84.4 7.0 62 937-1004 144-205 (510)
419 COG1132 MdlB ABC-type multidru 97.6 0.00012 2.7E-09 85.4 7.4 75 939-1023 466-540 (567)
420 PRK13631 cbiO cobalt transport 97.6 0.00012 2.6E-09 77.4 6.6 66 1-67 2-76 (320)
421 cd03290 ABCC_SUR1_N The SUR do 97.6 0.00016 3.5E-09 72.6 7.2 63 937-1004 139-202 (218)
422 KOG0976 Rho/Rac1-interacting s 97.6 0.23 4.9E-06 55.6 35.1 271 616-886 91-404 (1265)
423 TIGR02315 ABC_phnC phosphonate 97.6 9.3E-05 2E-09 75.9 5.5 34 34-67 18-52 (243)
424 cd03289 ABCC_CFTR2 The CFTR su 97.6 0.00015 3.2E-09 74.7 7.0 60 938-1004 138-197 (275)
425 COG1123 ATPase components of v 97.6 9.9E-05 2.1E-09 80.5 5.8 65 935-1004 151-215 (539)
426 COG1126 GlnQ ABC-type polar am 97.6 8.2E-05 1.8E-09 69.5 4.4 23 44-66 29-51 (240)
427 PRK11607 potG putrescine trans 97.6 9.2E-05 2E-09 79.9 5.5 63 937-1004 148-210 (377)
428 COG4181 Predicted ABC-type tra 97.5 0.00019 4.1E-09 64.0 6.2 64 935-1004 143-207 (228)
429 PF05701 WEMBL: Weak chloropla 97.5 0.27 5.8E-06 56.0 35.6 269 616-884 122-423 (522)
430 PRK10762 D-ribose transporter 97.5 0.00012 2.7E-09 83.7 6.8 63 936-1004 139-201 (501)
431 PRK14266 phosphate ABC transpo 97.5 0.00013 2.8E-09 75.1 6.3 49 19-68 2-54 (250)
432 TIGR02673 FtsE cell division A 97.5 0.00012 2.6E-09 73.4 5.8 33 34-66 18-51 (214)
433 PRK11248 tauB taurine transpor 97.5 0.00013 2.7E-09 74.9 6.1 34 34-67 17-51 (255)
434 PRK13657 cyclic beta-1,2-gluca 97.5 0.00014 3E-09 85.4 7.3 59 939-1004 472-530 (588)
435 cd03262 ABC_HisP_GlnQ_permease 97.5 0.00012 2.5E-09 73.4 5.7 34 34-67 16-50 (213)
436 PRK13638 cbiO cobalt transport 97.5 0.00011 2.3E-09 76.6 5.4 34 34-67 17-51 (271)
437 COG1124 DppF ABC-type dipeptid 97.5 0.00019 4.1E-09 68.8 6.5 121 36-158 25-150 (252)
438 COG3839 MalK ABC-type sugar tr 97.5 0.00013 2.7E-09 75.5 5.8 31 37-67 22-53 (338)
439 COG2274 SunT ABC-type bacterio 97.5 0.00026 5.5E-09 82.2 8.9 79 939-1028 610-688 (709)
440 PRK11176 lipid transporter ATP 97.5 0.00017 3.6E-09 84.9 7.7 60 938-1004 480-539 (582)
441 PRK10789 putative multidrug tr 97.5 0.00016 3.4E-09 84.3 7.2 60 938-1004 451-510 (569)
442 TIGR01192 chvA glucan exporter 97.5 0.00017 3.8E-09 84.1 7.4 60 938-1004 471-530 (585)
443 PRK14250 phosphate ABC transpo 97.5 0.00014 3.1E-09 74.1 6.0 33 35-67 20-53 (241)
444 TIGR01166 cbiO cobalt transpor 97.5 8.5E-05 1.8E-09 72.7 4.1 33 34-66 8-41 (190)
445 PRK14262 phosphate ABC transpo 97.5 0.00014 3.1E-09 74.8 6.0 34 34-67 19-53 (250)
446 PRK14274 phosphate ABC transpo 97.5 0.00015 3.2E-09 75.0 6.0 32 36-67 30-62 (259)
447 PRK14261 phosphate ABC transpo 97.5 0.00014 3E-09 75.0 5.8 33 35-67 23-56 (253)
448 PRK11264 putative amino-acid A 97.5 0.00013 2.8E-09 75.1 5.5 32 36-67 21-53 (250)
449 cd03224 ABC_TM1139_LivF_branch 97.5 0.00014 3E-09 73.5 5.6 32 34-65 16-48 (222)
450 TIGR03375 type_I_sec_LssB type 97.5 0.00018 3.8E-09 86.3 7.5 59 939-1004 602-660 (694)
451 COG4942 Membrane-bound metallo 97.5 0.17 3.7E-06 53.6 27.9 68 619-686 40-107 (420)
452 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.5 7.7E-05 1.7E-09 75.0 3.8 34 34-67 20-54 (218)
453 PRK11231 fecE iron-dicitrate t 97.5 0.00014 3E-09 75.0 5.7 32 36-67 20-52 (255)
454 PF09726 Macoilin: Transmembra 97.5 0.16 3.5E-06 59.1 30.7 22 702-723 490-511 (697)
455 PRK14242 phosphate transporter 97.5 0.00014 3E-09 75.0 5.6 34 34-67 22-56 (253)
456 COG0411 LivG ABC-type branched 97.5 2.6E-05 5.7E-10 74.5 0.3 39 29-67 12-54 (250)
457 PRK10636 putative ABC transpor 97.5 0.00015 3.2E-09 85.1 6.5 59 937-1004 429-487 (638)
458 PRK11247 ssuB aliphatic sulfon 97.5 0.00017 3.8E-09 73.7 6.2 47 21-67 13-62 (257)
459 PRK13648 cbiO cobalt transport 97.5 0.00012 2.5E-09 76.1 5.0 34 34-67 25-59 (269)
460 cd03269 ABC_putative_ATPase Th 97.5 0.00017 3.7E-09 71.9 5.9 34 34-67 16-50 (210)
461 cd03219 ABC_Mj1267_LivG_branch 97.5 0.00011 2.4E-09 75.0 4.6 34 34-67 16-50 (236)
462 COG4172 ABC-type uncharacteriz 97.5 0.00012 2.6E-09 74.8 4.7 84 936-1026 155-238 (534)
463 cd03261 ABC_Org_Solvent_Resist 97.5 0.00016 3.5E-09 73.5 5.9 34 34-67 16-50 (235)
464 COG4942 Membrane-bound metallo 97.5 0.15 3.2E-06 54.1 27.1 72 624-695 38-109 (420)
465 PRK10790 putative multidrug tr 97.5 0.00019 4.2E-09 84.4 7.3 59 939-1004 477-535 (592)
466 KOG0994 Extracellular matrix g 97.5 0.4 8.6E-06 56.2 54.9 30 841-870 1718-1747(1758)
467 TIGR01842 type_I_sec_PrtD type 97.5 0.0002 4.4E-09 83.1 7.3 61 938-1004 454-514 (544)
468 cd03248 ABCC_TAP TAP, the Tran 97.5 0.00016 3.5E-09 73.0 5.8 48 20-67 11-64 (226)
469 PRK13540 cytochrome c biogenes 97.5 0.00019 4.1E-09 70.8 6.0 33 34-66 17-50 (200)
470 PRK14253 phosphate ABC transpo 97.5 0.00015 3.2E-09 74.6 5.5 32 36-67 21-53 (249)
471 PRK13541 cytochrome c biogenes 97.5 0.00017 3.7E-09 70.8 5.6 31 37-67 19-50 (195)
472 PRK14245 phosphate ABC transpo 97.5 0.00017 3.8E-09 74.1 5.9 48 20-67 3-53 (250)
473 COG1245 Predicted ATPase, RNas 97.5 0.00019 4.2E-09 74.6 6.0 82 935-1024 210-291 (591)
474 PRK13644 cbiO cobalt transport 97.5 0.00017 3.6E-09 75.0 5.7 34 34-67 18-52 (274)
475 cd03260 ABC_PstB_phosphate_tra 97.5 0.0002 4.4E-09 72.4 6.2 34 34-67 16-50 (227)
476 cd03265 ABC_DrrA DrrA is the A 97.5 0.00018 3.9E-09 72.3 5.8 34 34-67 16-50 (220)
477 PRK11701 phnK phosphonate C-P 97.4 0.00014 3E-09 75.1 5.1 32 36-67 24-56 (258)
478 TIGR00960 3a0501s02 Type II (G 97.4 0.00019 4.2E-09 71.9 5.9 34 34-67 19-53 (216)
479 cd03256 ABC_PhnC_transporter A 97.4 0.00015 3.2E-09 74.3 5.2 34 34-67 17-51 (241)
480 cd03263 ABC_subfamily_A The AB 97.4 0.00011 2.4E-09 74.0 4.2 33 35-67 19-52 (220)
481 PRK09493 glnQ glutamine ABC tr 97.4 0.00016 3.6E-09 73.8 5.5 34 34-67 17-51 (240)
482 PRK13547 hmuV hemin importer A 97.4 0.00015 3.3E-09 74.8 5.3 33 35-67 18-51 (272)
483 PF12718 Tropomyosin_1: Tropom 97.4 0.037 8E-07 49.9 19.6 41 624-664 7-47 (143)
484 cd03226 ABC_cobalt_CbiO_domain 97.4 0.00011 2.4E-09 72.9 4.1 34 34-67 16-50 (205)
485 PRK14273 phosphate ABC transpo 97.4 0.00019 4.2E-09 74.0 6.0 47 21-67 8-57 (254)
486 PRK11629 lolD lipoprotein tran 97.4 0.0002 4.3E-09 72.8 5.9 34 34-67 25-59 (233)
487 TIGR02204 MsbA_rel ABC transpo 97.4 0.00022 4.7E-09 83.9 7.1 60 938-1004 476-535 (576)
488 TIGR03740 galliderm_ABC gallid 97.4 0.00011 2.5E-09 74.0 4.1 32 36-67 18-50 (223)
489 PRK13543 cytochrome c biogenes 97.4 0.00023 5.1E-09 71.0 6.3 48 19-67 10-61 (214)
490 PRK11124 artP arginine transpo 97.4 0.00019 4.2E-09 73.4 5.8 31 36-66 20-51 (242)
491 TIGR02211 LolD_lipo_ex lipopro 97.4 0.0002 4.3E-09 72.2 5.8 34 34-67 21-55 (221)
492 PRK14237 phosphate transporter 97.4 0.00019 4.1E-09 74.4 5.8 32 36-67 38-70 (267)
493 TIGR03522 GldA_ABC_ATP gliding 97.4 0.00017 3.6E-09 76.1 5.4 30 36-65 20-50 (301)
494 TIGR03185 DNA_S_dndD DNA sulfu 97.4 0.48 1E-05 56.2 35.3 104 885-1003 504-613 (650)
495 cd03268 ABC_BcrA_bacitracin_re 97.4 0.00021 4.6E-09 71.1 5.9 33 34-66 16-49 (208)
496 PF12718 Tropomyosin_1: Tropom 97.4 0.068 1.5E-06 48.3 21.2 14 672-685 41-54 (143)
497 COG0396 sufC Cysteine desulfur 97.4 0.00012 2.6E-09 69.2 3.7 21 44-64 31-51 (251)
498 cd03298 ABC_ThiQ_thiamine_tran 97.4 0.00013 2.8E-09 72.8 4.4 32 36-67 16-48 (211)
499 PRK11819 putative ABC transpor 97.4 0.00017 3.8E-09 83.4 6.1 59 937-1004 444-502 (556)
500 TIGR03864 PQQ_ABC_ATP ABC tran 97.4 0.0002 4.4E-09 72.8 5.8 32 34-65 17-49 (236)
No 1
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=1.9e-117 Score=955.67 Aligned_cols=1024 Identities=34% Similarity=0.519 Sum_probs=767.3
Q ss_pred ccccccCCCCCCCCceEEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhc
Q 001581 7 KRLKVSRGEDDYMPGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKR 86 (1050)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~ 86 (1050)
+++.+..-.++|++|.|.+|+|.||.+|..+++.|+|.+|+|+||||||||||+||||+||||.|...||+.++.+||++
T Consensus 6 ~~~~l~~~~~sf~~GsIvrI~l~NF~Ty~~~e~~pgpsLNmIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~ 85 (1072)
T KOG0979|consen 6 SDPALPLNYSSFPDGSIVRIELHNFLTYDHTEFLPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIKR 85 (1072)
T ss_pred cccccCCCcccCCCCceEEEEEeeeeeeeeeeecCCCceeeEECCCCCCchHHHHHHHHHcCCChhhccchhHHHHHHhc
Confidence 44555555688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEEEEeCCCCceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHHhcCChHHH
Q 001581 87 GEESGYIKISLRGDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKL 166 (1050)
Q Consensus 87 g~~~a~v~i~~~~~~~~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~~ 166 (1050)
|++.|+|+|++.+ .+.+++|+|.|.+++.|.|+|||..++.++|.+++..|||+++|+|+||||++|.+|+..+|.++
T Consensus 86 G~~~g~IEI~l~~--~~e~~~ItR~I~~~k~S~y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~L 163 (1072)
T KOG0979|consen 86 GEDEGYIEIELKD--KDETLTITRLISRDKESKYFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIEL 163 (1072)
T ss_pred CCccceEEEEEec--CCCceEEEEEEeecCCcceeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHH
Confidence 9999999999995 58999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhch
Q 001581 167 LEETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKY 246 (1050)
Q Consensus 167 ~~~~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 246 (1050)
+..++.++|.+.+...+.+|..+..+...+...+..-...+..+++.++.+++.++.+.+.......++-+..+..|+.|
T Consensus 164 L~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y 243 (1072)
T KOG0979|consen 164 LVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEY 243 (1072)
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHhhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHhhh-hHhHHHH
Q 001581 247 DMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLEKVDQ-GVQVQGK 325 (1050)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 325 (1050)
.....++...+...+.++.++..+.+...++....++++.+..+...++......+......+.....++.. ...+..+
T Consensus 244 ~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~ 323 (1072)
T KOG0979|consen 244 KKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEK 323 (1072)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988888888888888 8899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001581 326 YKEMQELRRQEQSRQQRILKAREELAAAELDLQTVPAYEPPHDKIEKLGSQILELGVQANQKRLQKSEKEKILNQNKLTL 405 (1050)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 405 (1050)
...++.+.......+..+....+.+..++..+......++...+..++..++.+.......-..+....+........++
T Consensus 324 ~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~l 403 (1072)
T KOG0979|consen 324 KNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDAEQLKSQKLRDL 403 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888888888877776666555544433333334444444444455
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhccCcccHHHHHHHHHHhhcccCCcccccceeEEeeCCcchHHHHHhhhcccccceEEe
Q 001581 406 RQCSDRLKDMEDKNNKLLHALRNSGAENIFEAYCWLQQHRHELNKEAYGPVLLEVNVSNRAHANYLEDHVGHYIWKSFIT 485 (1050)
Q Consensus 406 ~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~i~~~~~~~~~~ie~~l~~~~~~~~~v 485 (1050)
.....++........+..-.....++++...++.|+++++..|+..+++|+...+.+++++++.++|+++|-+.+.+|+|
T Consensus 404 ~~~kr~~~~~~~~~~~k~~~~l~~~~~d~~dAy~wlrenr~~FK~~vyeP~~m~l~~k~~~~A~~lEn~v~~~~~~~Fi~ 483 (1072)
T KOG0979|consen 404 ENKKRKLKQNSDLNRQKRYRVLRQGSSDAYDAYQWLRENRSEFKDEVYEPPIMTLNVKNAEFAKYLENFVGFNDLKAFIC 483 (1072)
T ss_pred HHHHHHHHHHhhhhhhhHHHHhccCchHHHHHHHHHHHCHHHhcccccCCceEEEecCChHHHHHHHcccCccccceeee
Confidence 55555555444443322122223345899999999999999999999999999999999999999999999999999999
Q ss_pred echhhHHHHHhhcCC--CCcceEeecCCCCCC--CCCCCChHHHHhcCccccccccccCcHHHHHHHHhhcCCcccccCC
Q 001581 486 QDAGDRDFLAKNLKP--FDVPILNYVSNESSR--KEPFQISEEMRALGISARLDQVFDAPHAVKEVLISQFGLDSSYIGS 561 (1050)
Q Consensus 486 ~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~ 561 (1050)
.+.+|+..+...++. +.+..+...+..... ..|....+.+...||.+++.+++.+|+++..+||...+++. |++
T Consensus 484 ~~~eD~~lf~~~i~d~k~~vn~~~~~~~~~k~~d~~p~~sre~l~~lGF~gyls~f~~~p~~vm~~Lc~~~~ih~--IPv 561 (1072)
T KOG0979|consen 484 CDSEDYLLFVKKIKDEKWRVNASEVIPREKKYADKIPAQSREELKRLGFEGYLSNFIEAPEPVMSYLCNVSKIHR--IPV 561 (1072)
T ss_pred echHHHHHHHHHhhhcceeeeceeccccccccccCCCccCHHHHHhcChHHHhhhhhcCcHHHHHHHHHhccccc--ccc
Confidence 999999999887776 333333222222211 11455567788999999999999999999999999999999 444
Q ss_pred CcchhhhhHhhhcCcceEEcCCceEEEEeeccCC-------------ccceeeecccCCccccccCChH-HHHHHHHHHH
Q 001581 562 KETDQKADNVAKLGILDFWTPENHYRWSISRYGG-------------HVSASVEPVNQSRLLLCSVDGN-EIERLRSKKK 627 (1050)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------------~~t~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~ 627 (1050)
...++....+.. ...+-+++|.+......||+ .++...+.+....++++..... ........+.
T Consensus 562 s~~~~~e~~~~~--~~~~r~~~~~~~~~~~i~g~~~~~i~~S~ygs~~v~~~~~~lk~~~f~~~~~~l~~~~~~~ee~~~ 639 (1072)
T KOG0979|consen 562 SKREVEEAIVEV--LQNIRQPNGSVFLKRNIAGGRSKSIKKSAYGSRQVITRNDPLKSRNFFSVSPVLEELDNRIEEEIQ 639 (1072)
T ss_pred CcccccHHHHHH--HhccccCCCchhHHHHhhcCchhhhhhhccccceeeecCCcchhhhhhccchHHHHHHHHHHHHHH
Confidence 443333222221 11333344443232222222 1222222222223333331111 1111222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccHHHHHHHHH
Q 001581 628 KLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESIEKE-DDINTALAKLV 706 (1050)
Q Consensus 628 ~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~l~~l~~~-~~~~~~~~~l~ 706 (1050)
.+..++......+..++.+.......+......+..+......+...+...+.+...++..+..+... ..+... ..
T Consensus 640 ~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~qkee~~~~---~~ 716 (1072)
T KOG0979|consen 640 KLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENLVVDLDRQEEEYAAS---EA 716 (1072)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 33333333333333333333333333333333333332222222222222222222222111111100 000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 707 DQAADLNIQQFKYAIEIKNLLVEIV-----SC--KWSYAEKHMASIEFDAKIRELEFNLKQHEKLALQASLHYEDCKKEV 779 (1050)
Q Consensus 707 ~~~~~l~~~~~~~~~~~~~l~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 779 (1050)
..+..............-.+...+. .. ...+.......-+++..+...+..+..+.+....++..+..++...
T Consensus 717 ~~I~~~~~~~~~~~~~~~~~~~k~~e~~i~~~~~~~~~~~s~~~~iea~~~i~~~e~~i~~~~~~~~~lk~a~~~~k~~a 796 (1072)
T KOG0979|consen 717 KKILDTEDMRIQSIRWHLELTDKHKEIGIKEKNESSYMARSNKNNIEAERKIEKLEDNISFLEAREDLLKTALEDKKKEA 796 (1072)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111100000000000000000 00 0000111111112223333333333333333333333333333333
Q ss_pred HHHH--HHHHHHHHHHHHhhcCCh----HHHHHHhcccCCHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHH
Q 001581 780 EHCR--KHLSDAKRQAESIAFITP----ELEKEFLEMPTTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLS 853 (1050)
Q Consensus 780 ~~~~--~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 853 (1050)
.... ..+..+...+........ .+..++.+.|.+..++...|..-......+-++|+.+.++|+....++..+.
T Consensus 797 ~~~~~~~~~~t~~~~~~s~~~~~~ek~~~~~~e~~e~p~t~~eld~~I~~e~t~~~~~~n~ne~~vq~y~~r~~el~~l~ 876 (1072)
T KOG0979|consen 797 AEKRKEQSLQTLKREIMSPATNKIEKSLVLMKELAEEPTTMDELDQAITDELTRALKFENVNEDAVQQYEVREDELRELE 876 (1072)
T ss_pred HhcccchhHHHhhhccccccccchhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 3322 122222222211111111 2455778889999999999988877666777899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcceEEEeecCCCcccccceEEEEEecCCCCccc
Q 001581 854 TKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEV 933 (1050)
Q Consensus 854 ~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~f~~~f~~l~~~g~~~l~~~~~~~~~~~l~i~v~~~~~~~~~~ 933 (1050)
..+......+..+.+.+......|.+.+.+++..|+.+|+.+|+.+++.|++.|+++|.|++.|||.|+|+||++++++.
T Consensus 877 ~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~~Fs~~F~~mg~aGeV~L~~~~~DydkwgI~ImVkFR~s~~L~~ 956 (1072)
T KOG0979|consen 877 TKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINERFSQLFSSMGCAGEVSLEVNPLDYDKWGIMIMVKFRDSEGLKV 956 (1072)
T ss_pred hhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEeccCcccHhHhceEEEEEEccCccccc
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred ccccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCC
Q 001581 934 LSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEA 1013 (1050)
Q Consensus 934 ~~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~ 1013 (1050)
|+.+.+||||||++|+.||+|||.++||||||+|||++||||.|.++||+.|+..+|..+.+|||+|||++|+||.|+.+
T Consensus 957 L~sh~QSGGERSVSTiLYLlALQ~l~~~PFRvVDEINQGMDp~NER~Vh~~mV~~ac~entsQyFliTPKLLpgL~Ysen 1036 (1072)
T KOG0979|consen 957 LDSHRQSGGERSVSTILYLLALQELTPAPFRVVDEINQGMDPRNERKVHDIMVNMACKENTSQYFLITPKLLPGLDYSEN 1036 (1072)
T ss_pred ccccccCCcchHHHHHHHHHHHhhccCCCeeehhhhhcCCCchhHHHHHHHHHHHhhcCCCcceEEecchhcCCCChhhc
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCCCCChhhhHh
Q 001581 1014 CSILNIMNGPWIEQPSKVWSSGECWG 1039 (1050)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1050)
|+|+|+|||||++.+.+.|.++..++
T Consensus 1037 m~Il~v~ng~~~~~p~~~~~~~~f~~ 1062 (1072)
T KOG0979|consen 1037 MKILCVMNGPWIAEPSHTWTSAKFDA 1062 (1072)
T ss_pred ceEEEEecCCcCCCCccCchHHHHHH
Confidence 99999999999999999999999886
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=5.1e-99 Score=923.14 Aligned_cols=973 Identities=20% Similarity=0.276 Sum_probs=557.8
Q ss_pred ceEEEEEEecccccc-eEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCce------eEE
Q 001581 21 GNIIEIELHNFMTFD-HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEES------GYI 93 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~-~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~------a~v 93 (1050)
|+|++|++.||+||. +++|+|+||+|+||||||||||||+|||+||||+.+++.+||+++.|+||.|+.. |.|
T Consensus 1 m~lk~i~l~gFKSF~~~~~i~f~~~~t~IvGPNGSGKSNI~DAi~fVLG~~s~k~lRa~~~~DlIf~g~~~r~~~~~A~V 80 (1163)
T COG1196 1 MYLKRIELKGFKSFADPTEINFSPGFTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLRASKMSDLIFAGSGNRKPANYAEV 80 (1163)
T ss_pred CeeeEEEEECcccCCCCeeeecCCCCeEEECCCCCchHHHHHHHHHHhCcchhhhhhccCCcceeeCCCCCCCCCCceEE
Confidence 799999999999999 6899999999999999999999999999999999999999999999999999877 999
Q ss_pred EEEEEeCCC-----CceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHHhcCChHHHHH
Q 001581 94 KISLRGDTK-----EEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLE 168 (1050)
Q Consensus 94 ~i~~~~~~~-----~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~~~~ 168 (1050)
+|+|+|++. ..+|+|+|+++++|.|.|+|||+.|+.+||.++|..+||++++| +|++||+|..|++|+|.+|+.
T Consensus 81 ~l~fdN~d~~~~~~~~ei~v~Rri~r~g~S~Y~INg~~~~~~dI~~l~~~~gi~~~~~-~iV~QG~V~~i~~~kp~err~ 159 (1163)
T COG1196 81 ELTFDNSDNTLPLEYEEISVTRRIYRDGESEYYINGEKVRLKDIQDLLADSGIGKESY-SIVSQGKVEEIINAKPEERRK 159 (1163)
T ss_pred EEEEeCCCCcCCcccceEEEEEEEEEcCCcEEEECCcEeeHHHHHHHHHhcCCCCCCC-ceeecccHHHHHcCCHHHHHH
Confidence 999999762 25899999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchHH
Q 001581 169 ETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDM 248 (1050)
Q Consensus 169 ~~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 248 (1050)
+|++++|+..|..... +...++..+..++..+...+.+++.+++.|+.+.+.+.+|..+..++..++..+.+..+..
T Consensus 160 iiEEaaGv~~y~~r~~---ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~ 236 (1163)
T COG1196 160 LIEEAAGVSKYKERKE---EAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKE 236 (1163)
T ss_pred HHHHHhchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999554443322 3334444444444444555555555555555555555566666666666666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchHhhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH--------------H-
Q 001581 249 KKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDF--------------L- 313 (1050)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~- 313 (1050)
...++..+...+..++..+..+...+......+..+...+..+...+..+...+......+..+ .
T Consensus 237 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~ 316 (1163)
T COG1196 237 LRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELEN 316 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555444444444444444433333332211111111111100 0
Q ss_pred -------------HHhhh-hHhHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 001581 314 -------------EKVDQ-GVQVQG--------------------------------KYKEMQELRRQEQSRQQRILKAR 347 (1050)
Q Consensus 314 -------------~~~~~-~~~~~~--------------------------------~~~~l~~~~~~~~~~~~~~~~~~ 347 (1050)
.++.. ...+.. .......++.....+..++....
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1163)
T COG1196 317 ELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIR 396 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000000 00011111111111111111111
Q ss_pred HHHHHHHHHhhcCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HhhhHH
Q 001581 348 EELAAAELDLQTVPA-YEPPHDKIEKLGSQILELGVQANQKRLQKSEKEKILNQNKLTLRQCSDRLK-------DMEDKN 419 (1050)
Q Consensus 348 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~-------~l~~~~ 419 (1050)
.++..++.++..+.. ...+...+..+..++..+..++..+..++..+..++..+...+..+...+. .++..+
T Consensus 397 ~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1163)
T COG1196 397 NELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEEL 476 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222221111 111111111122222222222211111111222222222222222222222 221111
Q ss_pred HHHHHHHhccCc--ccH------HHHHHHH-HHhhcccCCcccccceeEEeeCCcchHHHHHhhhcccccceEEeechhh
Q 001581 420 NKLLHALRNSGA--ENI------FEAYCWL-QQHRHELNKEAYGPVLLEVNVSNRAHANYLEDHVGHYIWKSFITQDAGD 490 (1050)
Q Consensus 420 ~~~~~~l~~~~~--~~~------~~~~~~l-~~~~~~~~~~~~g~~~~~i~~~~~~~~~~ie~~l~~~~~~~~~v~~~~~ 490 (1050)
......++.... ..+ ...+..+ ...... ..+++||++.++.++. .|..+|+.++|+. +.++||++..+
T Consensus 477 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~Gv~G~v~~li~v~~-~y~~Aie~alG~~-l~~vVV~~~~~ 553 (1163)
T COG1196 477 QRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESG-LPGVYGPVAELIKVKE-KYETALEAALGNR-LQAVVVENEEV 553 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcc-CCCccchHHHhcCcCh-HHHHHHHHHcccc-cCCeeeCChHH
Confidence 111111110000 000 0111111 111222 3689999999999975 9999999999984 57799999999
Q ss_pred HHHHHhhcCCCCcceEeecCCCCCCCCCCCChHHHHhcCccccccccccCcHHHHHHHHhhcCCcccccCCCcchhhhhH
Q 001581 491 RDFLAKNLKPFDVPILNYVSNESSRKEPFQISEEMRALGISARLDQVFDAPHAVKEVLISQFGLDSSYIGSKETDQKADN 570 (1050)
Q Consensus 491 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~ 570 (1050)
+..++..++....+..++.|.+.....+..+... ..|+.+++.+++.+||.|.+++..++| .+ ++|++.+.+..+
T Consensus 554 a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~--~~g~~~~a~dli~~d~~~~~~~~~~l~--~t-~Iv~~l~~A~~l 628 (1163)
T COG1196 554 AKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDA--APGFLGLASDLIDFDPKYEPAVRFVLG--DT-LVVDDLEQARRL 628 (1163)
T ss_pred HHHHHHHHhhcCCCccccCchhhhcccccccccc--ccchhHHHHHHhcCCHHHHHHHHHHhC--Ce-EEecCHHHHHHH
Confidence 9999999998888888877665432111111111 578889999999999999999999997 33 455555555566
Q ss_pred hhhcC-cceEEcCCceEEEEeeccCCccceeeecccCCccccccCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 571 VAKLG-ILDFWTPENHYRWSISRYGGHVSASVEPVNQSRLLLCSVD----GNEIERLRSKKKKLEESVDELEESLKSMQT 645 (1050)
Q Consensus 571 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~ 645 (1050)
..... ..++||.+|.+... +|++|+++ ..+.+....... ...+..+...+..+...+..+...+..+..
T Consensus 629 ~~~~~~~~riVTl~G~~~~~----~G~~tGG~--~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1163)
T COG1196 629 ARKLRIKYRIVTLDGDLVEP----SGSITGGS--RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLED 702 (1163)
T ss_pred HHhcCCCceEEecCCcEEeC----CeeeecCC--ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65543 23888988854221 34444431 111111110000 011112222222222222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH-------HHHHHHHHHHHHHHHhhc-ccHH----
Q 001581 646 EQRLIEDEAAKLQKEREEIINIVQ--------------IEKRKRRE-------MENHINLRKRKLESIEKE-DDIN---- 699 (1050)
Q Consensus 646 ~~~~~~~~~~~l~~~~~~~~~~l~--------------~~~~~~~~-------l~~~l~~~~~~l~~l~~~-~~~~---- 699 (1050)
.+..+......+..++..+..++. .+...+.. ++.++..+...+..+... ..+.
T Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 782 (1163)
T COG1196 703 LLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222211111111 11111111 111111111111111111 0011
Q ss_pred ----------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHH
Q 001581 700 ----------TALAKLVDQAADLN-------IQQFKYAIEIKNLLVEIVSCKWSYAEKHMASIEF-------DAKIRELE 755 (1050)
Q Consensus 700 ----------~~~~~l~~~~~~l~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~ 755 (1050)
..+..+...+..+. .++..+......+..++..+..++..+...+..+ +..+..+.
T Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 862 (1163)
T COG1196 783 ELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELK 862 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11111111111111 1111111111112222222222222222222222 22222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhh-------cCChHHH-------HHH-hcccCC
Q 001581 756 FNLKQHEKLALQASLHYEDCKKEVEHCRKHLSD-------AKRQAESIA-------FITPELE-------KEF-LEMPTT 813 (1050)
Q Consensus 756 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~-------~~~~~~~-------~~~-~~~~~~ 813 (1050)
..+..+...+..+...+..+......+...+.. +........ .....+. ..+ ...+..
T Consensus 863 ~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1163)
T COG1196 863 EELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDT 942 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 222222222222222222222222222222222 111111100 0000000 011 111122
Q ss_pred HH-HHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001581 814 IE-ELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETF 892 (1050)
Q Consensus 814 ~~-~l~~~i~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~f 892 (1050)
.. .+...+..++..+..++++|..++++|+.+.++|+++..++.++..++..+.+.|..++..+...|..+|..|+.+|
T Consensus 943 ~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F 1022 (1163)
T COG1196 943 LETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENF 1022 (1163)
T ss_pred hhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 68889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcceEEEee-cCCCcccccceEEEEEecCCCCcccccccccCchhHHHHHHHHHHHhcccCCCCceEeecccc
Q 001581 893 SRNFQEMAVAGEVSLD-EHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQ 971 (1050)
Q Consensus 893 ~~~f~~l~~~g~~~l~-~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~ 971 (1050)
..+|..|++||.+.|. .+|+||...||+|.|+|| |++++ +++.|||||||++||||+||||.++||||||||||||
T Consensus 1023 ~~if~~L~~GG~a~L~l~~~dd~l~~Giei~a~pp-gK~~~--~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDA 1099 (1163)
T COG1196 1023 SEIFKELFGGGTAELELTEPDDPLTAGIEISARPP-GKKLQ--SLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDA 1099 (1163)
T ss_pred HHHHHHhCCCCeeEEEeCCCCchhhcCcEEEEECC-CCCcc--chhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchh
Confidence 9999999999888887 677888899999999996 66555 5566999999999999999999999999999999999
Q ss_pred CCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC--------CCCCCCCC-CeEEE
Q 001581 972 GMDPINERKMFQQLVRAASQPNTPQCFLLTPKL--------LPDLEYSE-ACSIL 1017 (1050)
Q Consensus 972 ~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~--------l~~l~~~~-~~~~~ 1017 (1050)
|||++|+.+++.+|.+.+. ++|||||||+. +.|+++.+ +++-+
T Consensus 1100 aLD~~Nv~r~~~~i~e~s~---~sQFIvIThr~~~m~~ad~l~GVtm~~~GvS~v 1151 (1163)
T COG1196 1100 ALDDANVERVARLIKEMSK---ETQFIVITHRKGTMEAADRLVGVTMQEKGVSKV 1151 (1163)
T ss_pred hccHHHHHHHHHHHHHhCc---CCeEEEEEcChHHHHHHHHHeeeEeecCCceEE
Confidence 9999999999999998875 99999999994 55665554 45444
No 3
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-93 Score=784.22 Aligned_cols=972 Identities=19% Similarity=0.261 Sum_probs=619.1
Q ss_pred CCCceEEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCceeEEEEEE
Q 001581 18 YMPGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISL 97 (1050)
Q Consensus 18 ~~~~~i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~ 97 (1050)
-..|+|.+|+|.|||||+++.|+|+|.+|+|+||||||||+||.||+.||||+++.+.||.++++||+.|+.+|.|.|++
T Consensus 37 ~~sG~I~sI~L~NFMCHsnL~IeFg~~vNfI~G~NGSGKSAIltAl~lglG~rAs~tnRgsslK~lIK~G~~~A~IsItL 116 (1074)
T KOG0250|consen 37 AESGKIESIHLTNFMCHSNLLIEFGPRVNFIVGNNGSGKSAILTALTLGLGGRASATNRGSSLKDLIKDGCSSAKISITL 116 (1074)
T ss_pred hhcceEEEEEEeeecccccceeccCCCceEeecCCCCcHHHHHHHHHHhhccccccccchhhHHHHHhCCCcceEEEEEE
Confidence 34499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCC--------CceEEEEEEEecCCceeEEE---CCeec--CHHHHHHHHHHcCcccccccccccchhhHHHhc-CCh
Q 001581 98 RGDTK--------EEHLTIMRKIDTRNKSEWFF---NGKVV--PKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAK-LSP 163 (1050)
Q Consensus 98 ~~~~~--------~~~~~i~R~~~~~~~~~~~~---~g~~~--~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~-~~~ 163 (1050)
.|+|. |+.|+|.|+|.++|++.|.. +|+.+ ..+||..++.+|||+++|||+|++|+..++|+. ++|
T Consensus 117 ~N~G~~Afk~eiyG~~IiIER~I~~~~S~~~~~~~~~grvVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~~~~p 196 (1074)
T KOG0250|consen 117 SNSGLDAFKPEIYGNSIIIERTIRRSSSTYYLLRSANGRVVSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSFLANSNP 196 (1074)
T ss_pred ecCCcccCChhhcCCeeEEEEeeccccchHHHHhhccCccccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHHHhcCCh
Confidence 99753 58999999999988777766 36555 478999999999999999999999999999986 689
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 001581 164 VKLLEETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPW 243 (1050)
Q Consensus 164 ~~~~~~~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~ 243 (1050)
.+.|.+|.+++- |......+......+..+...+......+..++..+.+.+..+..++....+.+.+..++.++.|
T Consensus 197 ~dkYklfmkaT~---L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W 273 (1074)
T KOG0250|consen 197 KDKYKLFMKATQ---LEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAW 273 (1074)
T ss_pred HHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999873 32223333344444444455555555555555555555555555666666777777788888888
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHhhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHhhh-hHhH
Q 001581 244 LKYDMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLEKVDQ-GVQV 322 (1050)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 322 (1050)
..+.....++..+...+...+.....+++++......+......+.+.++.+..+..+......++..+...+.. ..+.
T Consensus 274 ~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~ 353 (1074)
T KOG0250|consen 274 AWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREV 353 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 877777777777777777777777777777777777777777666767666666666666656666665555555 5555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001581 323 QGKYKEMQELRRQEQSRQQRILKAREELAAAELDLQTVPAYEPPHDKIEKLGSQILELGVQANQKRLQKSEKEKILNQNK 402 (1050)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 402 (1050)
..++.++......+.+.+..+..+++.|..++.+... .+..++.+.+.++..+..++..++..+..|..+...+.
T Consensus 354 ~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~-----~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 354 NDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNN-----ELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666666666555421 13334444444444444444444444444444433333
Q ss_pred HHHHHHH-------HHHHHhhhHHHHHHHHH-----------hccCcccHHHHHHHHHHhhcccCCcccccceeEEeeCC
Q 001581 403 LTLRQCS-------DRLKDMEDKNNKLLHAL-----------RNSGAENIFEAYCWLQQHRHELNKEAYGPVLLEVNVSN 464 (1050)
Q Consensus 403 ~~~~~~~-------~~l~~l~~~~~~~~~~l-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~i~~~~ 464 (1050)
..+...+ ..+..+...+.+....+ ...+ +.+..++..|......|..+|.||+|.++.+.+
T Consensus 429 ~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG-~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~ 507 (1074)
T KOG0250|consen 429 EKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG-PNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKE 507 (1074)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc-hhhHHHHHHHHHHHhcCCCCCCCCccceeEecC
Confidence 3333322 22222222222222111 1124 788999999999888888999999999999999
Q ss_pred cchHHHHHhhhcccccceEEeechhhHHHHHhhcCCCC-----cceEeecCCCCCCCCCCCChHHHHhcC--cccccccc
Q 001581 465 RAHANYLEDHVGHYIWKSFITQDAGDRDFLAKNLKPFD-----VPILNYVSNESSRKEPFQISEEMRALG--ISARLDQV 537 (1050)
Q Consensus 465 ~~~~~~ie~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l 537 (1050)
|+|+.+|+.++|+ .+++|+|.++.|+..+..+++..+ ++++++...+.. +... ..++ +++.+.-+
T Consensus 508 ~KWa~aIE~~L~n-~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~~~------y~~~-~~p~~~~pTil~~l 579 (1074)
T KOG0250|consen 508 PKWALAIERCLGN-LLNAFIVTSHKDARILRAIMRRLKIPGNRPTIVVSSFTPFD------YSVG-RNPGYEFPTILDAL 579 (1074)
T ss_pred cHHHHHHHHHHHH-hhhhheeCCHhhHHHHHHHHHHcCCCCCCCcEEEecCCccc------cccc-cCCCCCCCceeeee
Confidence 9999999999998 668999999999999988876443 344444332221 1110 1112 34444333
Q ss_pred ccCcHHHHHHHHhhcCCcccccCCCcchhhhhHhh-h---cCcceEEcCCceEEEEeec-cCCccceeeecccCCccccc
Q 001581 538 FDAPHAVKEVLISQFGLDSSYIGSKETDQKADNVA-K---LGILDFWTPENHYRWSISR-YGGHVSASVEPVNQSRLLLC 612 (1050)
Q Consensus 538 ~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~ 612 (1050)
-..+|.|.++|.+..|+..++++.+..++. .++. . .++..++|+||...+.++. |..+.|. +...+.++....
T Consensus 580 e~ddp~V~N~LID~s~iE~~lLiEdk~Ea~-~~m~s~~~p~n~~~aytldg~~~~~~g~~~~~ySt~-~~~~r~~~~~~~ 657 (1074)
T KOG0250|consen 580 EFDDPEVLNVLIDKSGIEQVLLIEDKKEAR-EFMQSDKPPANVTKAYTLDGRQIFAGGPNYRVYSTR-GTRARRPGVDEF 657 (1074)
T ss_pred ecCChHHHHHhhhhccceeEEEecchHHHH-HHHhcCCCCccceeeeccCccccccCCCCcceeccC-CCCCCCccccch
Confidence 335789999999999999987776655444 3332 2 1234677887754322211 1111111 111111111111
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 001581 613 SVDGNEIERLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRK--LE 690 (1050)
Q Consensus 613 ~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~--l~ 690 (1050)
.+...++.++.++..++.++..+..+..+++..+..++..+..+..++......+.....++..+++. ..
T Consensus 658 --------s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~ 729 (1074)
T KOG0250|consen 658 --------SFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEK 729 (1074)
T ss_pred --------hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 22333444444444444444444444555555555555555555544444444444444444444442 00
Q ss_pred HHh--hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 691 SIE--KEDDINTALAKLVDQAADLNIQQFKYAIEIKNLLVEIVSCKWSYAEKHMASIEFDAKIRELEFNLKQHEKLALQA 768 (1050)
Q Consensus 691 ~l~--~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 768 (1050)
... .-.++..++.....++.+....++.+..++..+..+...+...+......+......++.+..++......+...
T Consensus 730 ~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~ 809 (1074)
T KOG0250|consen 730 QVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSA 809 (1074)
T ss_pred hcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Confidence 000 001122222222233333333333333333333333333333333333333332233333333322222222221
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHH-Hh---hcCChHHHHHHhcccCCHHHHHHHHHHHHHhhhhccCCCHH
Q 001581 769 SLHYEDCKKEVE-------HCRKHLSDAKRQAE-SI---AFITPELEKEFLEMPTTIEELEAAIQDNISQANSIFFLNQN 837 (1050)
Q Consensus 769 ~~~~~~~~~~~~-------~~~~~l~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~ 837 (1050)
+...-.+...+. ..+..+...+.... .. ....++...++..++...+++..++..+...++....+...
T Consensus 810 e~~~~HyE~~~K~~l~~l~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ee~~~~ 889 (1074)
T KOG0250|consen 810 EDEKRHYEDKLKSRLEELKQKEVEKVNLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMCEESLGE 889 (1074)
T ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHhhhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHHHHhcch
Confidence 111111111111 11111111111110 00 00001111233444456788889999998888877654432
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcceEEEeecCCCcc
Q 001581 838 ILQEYE---HRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLDEHESDF 914 (1050)
Q Consensus 838 ~~~~~~---~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~f~~~f~~l~~~g~~~l~~~~~~~ 914 (1050)
..+.+. .....+.........+...+..+...+..+...|......++......|..+....++.|.+.++ +.
T Consensus 890 ~~e~~~~~~~~~~~~~k~~~~k~~~~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~F~~~l~~R~~sg~l~~~-~e--- 965 (1074)
T KOG0250|consen 890 LEELHRGLHEARKELKKEDELKVTLDELLKALGEALESREQKYQKFRKLLTRRATEEFDALLGKRGFSGKLEFD-HE--- 965 (1074)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcceeec-cc---
Confidence 222222 22223333333333378888889999999999999888889999999999999999999999998 33
Q ss_pred cccceEEEE-EecCCCCcccc-cccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCC
Q 001581 915 DKFGILIKV-KFRQSGQLEVL-SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQP 992 (1050)
Q Consensus 915 ~~~~l~i~v-~~~~~~~~~~~-~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~ 992 (1050)
+..++|.| .|+++.. ++. ++..||||||||+|+||+||||..+.||||+|||||||||.+|++.++++|++.|...
T Consensus 966 -~ktl~i~v~~~~~~~~-~~v~d~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRKi~~dlLv~~a~~~ 1043 (1074)
T KOG0250|consen 966 -EKTLSISVKLPTSGNE-KAVRDTRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRKISMDLLVDFAKKK 1043 (1074)
T ss_pred -ccccchhhccCCCCcc-cccccccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677788 4544443 334 7888999999999999999999999999999999999999999999999999999855
Q ss_pred CCCeEEEEcCCCCCCCCCCCCeEEEEEecCCC
Q 001581 993 NTPQCFLLTPKLLPDLEYSEACSILNIMNGPW 1024 (1050)
Q Consensus 993 ~~~Q~i~iTp~~l~~l~~~~~~~~~~~~~~~~ 1024 (1050)
. +||||||||+|..|..+++++|+ .|+.|-
T Consensus 1044 ~-~Q~IfiTPqdi~~l~~~~~i~v~-rm~~pe 1073 (1074)
T KOG0250|consen 1044 G-RQFIFITPQDISKLNSDDGIVVF-RMSDPE 1073 (1074)
T ss_pred c-ceEEEEccccHhhhccccceEEe-eccCCC
Confidence 5 99999999999999999999999 498874
No 4
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.3e-84 Score=693.87 Aligned_cols=973 Identities=16% Similarity=0.197 Sum_probs=584.1
Q ss_pred ceEEEEEEecccccc-eEEE-ecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCC----ceeEEE
Q 001581 21 GNIIEIELHNFMTFD-HLIC-KPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGE----ESGYIK 94 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~-~~~i-~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~----~~a~v~ 94 (1050)
|+|++|.|.||+||+ ++.| .|+|.||+|+|-||||||||+|+||||||-......||.++.++|+.+. +.|.|+
T Consensus 1 M~IkeiiLDGFKSYa~rTvI~~fDp~FNAITGlNGSGKSNILDsICFvLGI~nl~~VRA~nlqeLIyk~GQAGiTkAsVs 80 (1174)
T KOG0933|consen 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDSICFVLGITNLSQVRASNLQELIYKNGQAGITKASVS 80 (1174)
T ss_pred CchhhhhhcchhcceeeeeccCCCcccchhhcCCCCCchHHHHHHHHHHccchHHHHHHHHHHHHHHhcCcccceeEEEE
Confidence 899999999999999 5555 5999999999999999999999999999999999999999999997544 889999
Q ss_pred EEEEeCCC---------CceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHHhcCChHH
Q 001581 95 ISLRGDTK---------EEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVK 165 (1050)
Q Consensus 95 i~~~~~~~---------~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~ 165 (1050)
|+|+|++. .++|+|+|.|..+|.+.|+|||+.+....++++|...++.++||.|++.||++...++|+|.+
T Consensus 81 VvFdNtdk~~SP~G~E~h~EIsVtRqIv~gG~~KylINGh~a~~~~vq~lF~SVqLNvNNP~FLIMQGrITkVLNMKp~E 160 (1174)
T KOG0933|consen 81 VVFDNTDKARSPLGYEHHDEISVTRQIVVGGTNKYLINGHLAQNSKVQDLFCSVQLNVNNPHFLIMQGRITKVLNMKPSE 160 (1174)
T ss_pred EEecCCCcccCCCCcccCCeeEEEEEEEecCceeEEEcCeeCchhHHHHHHHHhcccCCCCceEEecccchhhhcCCcHH
Confidence 99999753 389999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 001581 166 LLEETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTL-NQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWL 244 (1050)
Q Consensus 166 ~~~~~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l-~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~ 244 (1050)
.+.++++++|+..|....+.- ..-+..-+.+++++..-| +++.-.+..|+.+...+-+|+.....++.+.......
T Consensus 161 ILsMvEEAAGTrmye~kKe~A---~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~ 237 (1174)
T KOG0933|consen 161 ILSMVEEAAGTRMYENKKEAA---EKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRICIAY 237 (1174)
T ss_pred HHHHHHHhhcchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999976554433321 112222233333333333 2344555667777777777777777777777665555
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHhhHHHHHHhHHhhH--------HHHHHHHHHHH-------HHH
Q 001581 245 KYDMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDC--------KKLSSLINENS-------KRR 309 (1050)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-------~~~ 309 (1050)
+|-............+.+....+..+.+.......++..++.++.++.... ..+...+..+. ..+
T Consensus 238 eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l 317 (1174)
T KOG0933|consen 238 EYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSL 317 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 554444444444444444444444444444444444444444444433311 11111121111 111
Q ss_pred HHHHHHhhh-hHhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhcCCC--------CCCC
Q 001581 310 MDFLEKVDQ-GVQVQGKYKEMQELRRQEQ--------------SRQQRILKAREELAAAELDLQTVPA--------YEPP 366 (1050)
Q Consensus 310 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~ 366 (1050)
......+.. ...+..+...+......+. ...+........++..+..++.+.. -..+
T Consensus 318 ~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l 397 (1174)
T KOG0933|consen 318 NLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTL 397 (1174)
T ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhH
Confidence 111222222 2222222222222222222 2222223333333333333433332 1234
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHhhhHHHHHHHHHhccCc--------
Q 001581 367 HDKIEKLGSQILELGVQANQKRLQKSEKEKILNQNKLTLRQC-------SDRLKDMEDKNNKLLHALRNSGA-------- 431 (1050)
Q Consensus 367 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~l~~l~~~~~~~~~~l~~~~~-------- 431 (1050)
..++......+..+...+..+.-+++.++.++...+.+.... ...+..++++...+..+++..++
T Consensus 398 ~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l 477 (1174)
T KOG0933|consen 398 EDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEAL 477 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHH
Confidence 455555555555555555555554444444444333332222 22333444444444444443322
Q ss_pred -----------ccHHHHHHHHHHhh--cccC----------CcccccceeEEeeCCcchHHHHHhhhcccccceEEeech
Q 001581 432 -----------ENIFEAYCWLQQHR--HELN----------KEAYGPVLLEVNVSNRAHANYLEDHVGHYIWKSFITQDA 488 (1050)
Q Consensus 432 -----------~~~~~~~~~l~~~~--~~~~----------~~~~g~~~~~i~~~~~~~~~~ie~~l~~~~~~~~~v~~~ 488 (1050)
..+...+..+.+.. ..|. ..|.|.++.++.+++..|..|++.+.|+.+ ..+||++.
T Consensus 478 ~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V~G~Va~Li~vkd~~~~tAle~~aGgrL-ynvVv~te 556 (1174)
T KOG0933|consen 478 KQRRAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKVKGLVAKLIKVKDRSYATALETTAGGRL-YNVVVDTE 556 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccchHHHHHHHHHHHheeCcchHHHHHHHHhcCcc-eeEEeech
Confidence 11222222222211 1221 247789999999999999999999999965 56888888
Q ss_pred hhHHHHHhhcC-CCCcceEeecCCCCCCCCCCCChHHHHh--cCccccccccccCcHHHHHHHHhhcCCcccccCCCcch
Q 001581 489 GDRDFLAKNLK-PFDVPILNYVSNESSRKEPFQISEEMRA--LGISARLDQVFDAPHAVKEVLISQFGLDSSYIGSKETD 565 (1050)
Q Consensus 489 ~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~~~~ 565 (1050)
.....++.... ..++++++++....... ++......+. ++-...+.+++.||+.+.+++..++| .+ ++|++.+
T Consensus 557 ~tgkqLLq~g~l~rRvTiIPLnKI~s~~~-s~~v~~~ak~v~~~~v~~al~Li~yd~~l~~amefvFG--~t-lVc~~~d 632 (1174)
T KOG0933|consen 557 DTGKQLLQRGNLRRRVTIIPLNKIQSFVL-SPNVLQAAKNVGNDNVELALSLIGYDDELKKAMEFVFG--ST-LVCDSLD 632 (1174)
T ss_pred HHHHHHhhcccccceeEEEechhhhhccC-CHhHHHHHHHhcCchHHHHHHHhcCCHHHHHHHHHHhC--ce-EEecCHH
Confidence 88887776433 35677777664321100 1111122221 22334567899999999999999998 43 4566666
Q ss_pred hhhhHhhhcCcceEEcCCceEEEEeeccCCccceeeecccCCccccccCChH---------HHHHHHHHHHHHHHHHHHH
Q 001581 566 QKADNVAKLGILDFWTPENHYRWSISRYGGHVSASVEPVNQSRLLLCSVDGN---------EIERLRSKKKKLEESVDEL 636 (1050)
Q Consensus 566 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~l~~~~~~l 636 (1050)
.+..+.+...+. .+.||++|+++.|+|+++||+... .+..+..++...+.++..+
T Consensus 633 ~AKkVaf~~~i~----------------~rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~l 696 (1174)
T KOG0933|consen 633 VAKKVAFDPKIR----------------TRSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEAL 696 (1174)
T ss_pred HHHHhhcccccc----------------cceeeecCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665544421111 245777888888999998886432 1122233333344444444
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001581 637 EESLKSMQTEQR---LIEDEAAKLQKEREEII-------------------NIVQIEKRKRREMENHINLRKRKLESIEK 694 (1050)
Q Consensus 637 ~~~l~~l~~~~~---~~~~~~~~l~~~~~~~~-------------------~~l~~~~~~~~~l~~~l~~~~~~l~~l~~ 694 (1050)
+.++..++..-. .+.+++.-...++.-+. ..+.....++......+......+..++.
T Consensus 697 e~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~ 776 (1174)
T KOG0933|consen 697 ERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEK 776 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433332211 11112111111111111 11111112222222222222222222221
Q ss_pred c-----ccHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001581 695 E-----DDINTALAKLVDQAADLNIQQFKY-------AIEIKNLLVEIVSCKWSYAEKHMASIEFDAKIRELEFNLKQHE 762 (1050)
Q Consensus 695 ~-----~~~~~~~~~l~~~~~~l~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 762 (1050)
. ..-..++.++..++..+....+.. ...+..+.-+...+..++...+..+......++.+..++..+.
T Consensus 777 ~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~ 856 (1174)
T KOG0933|consen 777 KMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLE 856 (1174)
T ss_pred HHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111223333333333333332222 2222222222222222222222222222222222322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHhhc-----------------------
Q 001581 763 KLALQASLHYEDCKKEVEHCRKHLSDAKRQA---------------------ESIAF----------------------- 798 (1050)
Q Consensus 763 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~---------------------~~~~~----------------------- 798 (1050)
..+.........+..++......+......+ ..+..
T Consensus 857 ~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~ 936 (1174)
T KOG0933|consen 857 AKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKH 936 (1174)
T ss_pred HHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhc
Confidence 2222222222222222222111111100000 00000
Q ss_pred -CChHHHHHHhc------c-cCCHHHHHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 799 -ITPELEKEFLE------M-PTTIEELEAAIQDNISQANSIF-FLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAE 869 (1050)
Q Consensus 799 -~~~~~~~~~~~------~-~~~~~~l~~~i~~l~~~l~~l~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 869 (1050)
.+.....-|.. + ..++.+...++..++.....++ .+|+.+..-++..+.++..+......+......+...
T Consensus 937 ~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~kt 1016 (1174)
T KOG0933|consen 937 EWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKT 1016 (1174)
T ss_pred cchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 00000000100 0 1356677788888888888887 6889999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcceEEEeecCCCcccccceEEEEEecCCCCcccccccccCchhHHHHHH
Q 001581 870 IDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTI 949 (1050)
Q Consensus 870 i~~l~~~~~~~~~~~~~~i~~~f~~~f~~l~~~g~~~l~~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~lSGGErs~~~l 949 (1050)
|..+++.....+..++..||..|..+|+.|-||..+.|.+++..-.-.|++|.|+|. | .|.-+.+.||||+||++||
T Consensus 1017 I~~lDe~k~~~L~kaw~~VN~dFG~IFs~LLPga~AkL~Ppeg~~~~dGLEvkV~~G-~--iWKeSL~ELSGGQRSLVAL 1093 (1174)
T KOG0933|consen 1017 IEKLDEKKREELNKAWEKVNKDFGSIFSTLLPGAMAKLEPPEGKTVLDGLEVKVKFG-G--IWKESLSELSGGQRSLVAL 1093 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCccccccCCCCCccccceEEEEEeC-c--cHHHHHHHhcCchHHHHHH
Confidence 999999999999999999999999999999999999999333333356999999994 2 3556788899999999999
Q ss_pred HHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC--------CCCCCCCCCeEEEEEec
Q 001581 950 LYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL--------LPDLEYSEACSILNIMN 1021 (1050)
Q Consensus 950 all~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~--------l~~l~~~~~~~~~~~~~ 1021 (1050)
||+||+..+.||||||||||||+||-.++..++.+|... ++++|||||+.+. |+.+.|.||++++++++
T Consensus 1094 sLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkth---F~~sQFIVVSLKeGMF~NANvLFrtrF~DG~Stv~r~~ 1170 (1174)
T KOG0933|consen 1094 SLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTH---FTHSQFIVVSLKEGMFNNANVLFRTRFVDGVSTVQRTV 1170 (1174)
T ss_pred HHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhh---CCCCeEEEEEchhhccccchhhheeeeecCceeeeeec
Confidence 999999999999999999999999999999999988755 4599999999983 77788999999999887
Q ss_pred CC
Q 001581 1022 GP 1023 (1050)
Q Consensus 1022 ~~ 1023 (1050)
+-
T Consensus 1171 ~~ 1172 (1174)
T KOG0933|consen 1171 TK 1172 (1174)
T ss_pred cc
Confidence 64
No 5
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.4e-84 Score=692.68 Aligned_cols=977 Identities=16% Similarity=0.235 Sum_probs=571.1
Q ss_pred ceEEEEEEecccccc-eEEEe-cCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCc----eeEEE
Q 001581 21 GNIIEIELHNFMTFD-HLICK-PGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEE----SGYIK 94 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~-~~~i~-f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~----~a~v~ 94 (1050)
|+|+.|.|.||+||. .+.++ |+|+.|+|||.|||||||++.||+|||.+..+.. |...-..+||.|+. +|+|+
T Consensus 1 MyIk~ViI~GFrSYrd~tvv~~fSph~NvIVGrNGSGKSNFF~AIrFVLSDey~hL-k~E~R~gLlHEGsG~~V~sA~VE 79 (1200)
T KOG0964|consen 1 MYIKQVIIKGFRSYRDETVVDPFSPHHNVIVGRNGSGKSNFFHAIRFVLSDEYSHL-KREERQGLLHEGSGAMVMSASVE 79 (1200)
T ss_pred CceEEeeeccchhhccccccCCCCCCcceEecCCCCCchhhHHHhhhhcccchhhc-CHHHHhhhhhcCCCcceEEEEEE
Confidence 899999999999999 45555 9999999999999999999999999999988776 33566789998874 69999
Q ss_pred EEEEeCC-----CCceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHHhcCChHHHHHH
Q 001581 95 ISLRGDT-----KEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEE 169 (1050)
Q Consensus 95 i~~~~~~-----~~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~~~~~ 169 (1050)
|+|+|++ ++.+++|.|+++. .+..|+++++-|+..++..+|...|++..|||++++||+|.+++.++..+|+.+
T Consensus 80 IvF~nsdnr~~~~k~Ev~lrRtVGl-KKDeY~lD~k~Vtk~evvnLLESAGFSrsNPYyIV~QGkI~~La~akD~eRL~L 158 (1200)
T KOG0964|consen 80 IVFDNSDNRLPRGKSEVSLRRTVGL-KKDEYFLDNKMVTKGEVVNLLESAGFSRSNPYYIVPQGKINELANAKDSERLEL 158 (1200)
T ss_pred EEEeCcccccCCCCCeEEEEEeecc-cchhhhcccccccHHHHHHHHHhcCcccCCCceEeechhhHHhhcCCcHHHHHH
Confidence 9999875 3589999999998 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchHHH
Q 001581 170 TEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMK 249 (1050)
Q Consensus 170 ~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 249 (1050)
+.+.+|+..|.+..+.. ..-+.++..+-..+...|..+++++.+|+.+.+.++.|.++....+.++-.+..-.+...
T Consensus 159 LkeVaGtrvYeerreeS---lkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~ 235 (1200)
T KOG0964|consen 159 LKEVAGTRVYEERREES---LKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEI 235 (1200)
T ss_pred HHHhcccchhHHhHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHH
Confidence 99999988777665543 344566666777788888888889999998888888887776666555554443333332
Q ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHhhcccccchHhhHHHHHHhHHhh--------------HHHHHHH
Q 001581 250 KAEYIAAKEQE--------------KDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGD--------------CKKLSSL 301 (1050)
Q Consensus 250 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 301 (1050)
..++..+.... ......+..+..++.+++..+..+..+...++.+ +..++.+
T Consensus 236 ~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~ 315 (1200)
T KOG0964|consen 236 NGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQ 315 (1200)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 22222221111 1111122222222222222222222211111111 1111111
Q ss_pred HHHHH-------HHHHHHHHHhhh-hHhHHH------------------------------------------------H
Q 001581 302 INENS-------KRRMDFLEKVDQ-GVQVQG------------------------------------------------K 325 (1050)
Q Consensus 302 ~~~~~-------~~~~~~~~~~~~-~~~~~~------------------------------------------------~ 325 (1050)
+.... ..+..+..++.+ ..++.. +
T Consensus 316 i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwi 395 (1200)
T KOG0964|consen 316 ITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWI 395 (1200)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHH
Confidence 11100 001111111111 111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001581 326 YKEMQELRRQEQSRQQRILKAREELAAAELDLQTVPA-YEPPHDKIEKLGSQILELGVQANQKRLQKSEKEKILNQNKLT 404 (1050)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 404 (1050)
+.++..+..-+.........++.++..++..+....+ +..+...+.+...++.++......+..+.+++......++++
T Consensus 396 r~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWRE 475 (1200)
T KOG0964|consen 396 RSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWRE 475 (1200)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111122222222222222222211110 111112222222233333333333444445555555555555
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhccCcccHHHHHHHHHHhhccc-CCcccccceeEEeeCCcchHHHHHhhhcccccceE
Q 001581 405 LRQCSDRLKDMEDKNNKLLHALRNSGAENIFEAYCWLQQHRHEL-NKEAYGPVLLEVNVSNRAHANYLEDHVGHYIWKSF 483 (1050)
Q Consensus 405 ~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~g~~~~~i~~~~~~~~~~ie~~l~~~~~~~~ 483 (1050)
-..++..+..++..+......+.......+...+..++.....+ ..+++||+++++.++ +.|-.++|...|+ .++++
T Consensus 476 E~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~-~~f~tavEvtaGN-sLF~i 553 (1200)
T KOG0964|consen 476 EKKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVP-NKFKTAVEVTAGN-SLFNI 553 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCC-HHHHhHHhhhccc-ceEEE
Confidence 56666666666666666555554443334444444444433333 378999999999986 6677899988887 66789
Q ss_pred EeechhhHHHHHhhcCCCCcceEeecCCCCCCCCCCCChHHHHhcCccccccccccCcHHHHHHHHhhcCCcccccCCCc
Q 001581 484 ITQDAGDRDFLAKNLKPFDVPILNYVSNESSRKEPFQISEEMRALGISARLDQVFDAPHAVKEVLISQFGLDSSYIGSKE 563 (1050)
Q Consensus 484 ~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~~ 563 (1050)
||++++.+..++..+...+.|.++|.|.+....+....+ ..... .++...+.++|.|..++..++| .+ |+|.+
T Consensus 554 VVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r~v~yp---~~sda-iPli~kl~y~p~fdka~k~Vfg--kt-ivcrd 626 (1200)
T KOG0964|consen 554 VVDNDEVATKILRKLNKMKGGRVTFMPLNRLKARDVEYP---KDSDA-IPLISKLRYEPQFDKALKHVFG--KT-IVCRD 626 (1200)
T ss_pred EecccHHHHHHHHHHHhccCCeeEEeecccCchhhccCC---CCCCc-cchHHHhCcchhhHHHHHHHhC--ce-EEecc
Confidence 999999999888776554444444444322111111110 01111 2456678899999999999987 44 55555
Q ss_pred chhhhhHhhhcCcceEEcCCceEEEEeeccCCccceeeecccCCcccccc-C--ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 564 TDQKADNVAKLGILDFWTPENHYRWSISRYGGHVSASVEPVNQSRLLLCS-V--DGNEIERLRSKKKKLEESVDELEESL 640 (1050)
Q Consensus 564 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~--~~~~~~~l~~~~~~l~~~~~~l~~~l 640 (1050)
...+..+...+++ .+||.+|....+ .|.+|++....+.+++-.-. . .......+...+..++..+.....++
T Consensus 627 l~qa~~~ak~~~l-n~ITl~GDqvsk----kG~lTgGy~D~krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i 701 (1200)
T KOG0964|consen 627 LEQALRLAKKHEL-NCITLSGDQVSK----KGVLTGGYEDQKRSRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKI 701 (1200)
T ss_pred HHHHHHHHHhcCC-CeEEeccceecc----cCCccccchhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566665554 456666543221 13333322222222111000 0 00122233333333333343443344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhc-----------------c
Q 001581 641 KSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREME-------NHINLRKRKLESIEKE-----------------D 696 (1050)
Q Consensus 641 ~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~-------~~l~~~~~~l~~l~~~-----------------~ 696 (1050)
..+...++.++........+...+..++..+..+...++ ..+..++..+..+... .
T Consensus 702 ~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ 781 (1200)
T KOG0964|consen 702 DQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTP 781 (1200)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCH
Confidence 433333333333333333333333333333222222222 2222222222222211 0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH--------HHHHHHHHHHHH-----HHhHHHHHHHHHHHHH
Q 001581 697 DINTALAKLVDQAADLNIQQFKYAIEIKN-------LLV--------EIVSCKWSYAEK-----HMASIEFDAKIRELEF 756 (1050)
Q Consensus 697 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-------l~~--------~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~ 756 (1050)
.....+..+..++..+..++..+..+... +.. ....+...+..+ ...+.....++.....
T Consensus 782 ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~ 861 (1200)
T KOG0964|consen 782 EELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEK 861 (1200)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHH
Confidence 11122333333444443333322221111 111 111111111111 1111222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------H-------HhhcCChHHHHHH---hccc--
Q 001581 757 NLKQHEKLALQASLHYEDCKKEVEHCRKHLSDAKRQA-------------E-------SIAFITPELEKEF---LEMP-- 811 (1050)
Q Consensus 757 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~-------------~-------~~~~~~~~~~~~~---~~~~-- 811 (1050)
+++....++..++..++.....+......++.+.... + .+-...+++.+.+ .-+|
T Consensus 862 ~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~~~~~dKe~Ek~~~rk~~Ll~KreE~~ekIr~lG~Lp~d 941 (1200)
T KOG0964|consen 862 RVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKDNINFDKELEKLVRRKHMLLKKREECCEKIRELGVLPED 941 (1200)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 2222222222222222222222222222211111000 0 0000001121111 2222
Q ss_pred -------CCHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001581 812 -------TTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNL 884 (1050)
Q Consensus 812 -------~~~~~l~~~i~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~ 884 (1050)
....++...+..+..++..++.+|..|+++|....++.+.+.+..++|......+.+.|..++.+..+.+..+
T Consensus 942 af~ky~~~~~~el~kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~~R~eELd~s~~sI~eLi~vLdqrK~eai~~T 1021 (1200)
T KOG0964|consen 942 AFEKYQDKKSKELMKKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLKKRQEELDRSKDSILELITVLDQRKYEAIDLT 1021 (1200)
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhHHHHHHH
Confidence 3678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcceEEEee----c-------CCCccc-----------c-cceEEEEEecCCCCcccccccccCc
Q 001581 885 VAQINETFSRNFQEMAVAGEVSLD----E-------HESDFD-----------K-FGILIKVKFRQSGQLEVLSAHHQSG 941 (1050)
Q Consensus 885 ~~~i~~~f~~~f~~l~~~g~~~l~----~-------~~~~~~-----------~-~~l~i~v~~~~~~~~~~~~~~~lSG 941 (1050)
|..|+++|+++|..|.|+|.+.+. . ++.+++ . .||.|.|+|++. ....+.|.+|||
T Consensus 1022 FkqV~knFsevF~~LVp~G~a~iim~k~d~~~d~~e~d~~~~~~s~~~~~sv~~ytGIsI~VSFnsk-q~E~~~m~QLSG 1100 (1200)
T KOG0964|consen 1022 FKQVKKNFSEVFSRLVPGGTALIIMRKRDNANDHDEDDGDMDGESNEGKDSVEMYTGISIKVSFNSK-QGETLEMEQLSG 1100 (1200)
T ss_pred HHHHHHHHHHHHHHhCCCCceeehhhccccccccccccccccccccccccchhhccceeEEEEeecC-ccHHHHHHHhcC
Confidence 999999999999999999999554 1 011122 1 479999999853 234678899999
Q ss_pred hhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEc--CCC------CCCCCCCCC
Q 001581 942 GERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLT--PKL------LPDLEYSEA 1013 (1050)
Q Consensus 942 GErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iT--p~~------l~~l~~~~~ 1013 (1050)
|+||++||||+||||.|+|||||+||||||+||+..+..|..+|.+++. ++|||+-| |.+ .+++.|.++
T Consensus 1101 GQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~---~aQFI~TTFRpEll~vAdKfygV~f~nK 1177 (1200)
T KOG0964|consen 1101 GQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSD---SAQFITTTFRPELLSVADKFYGVKFENK 1177 (1200)
T ss_pred chHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhh---ccceEeecccHHHHHHHHhhhceeeccc
Confidence 9999999999999999999999999999999999999999999998886 79999999 543 567888888
Q ss_pred eEEEEEe
Q 001581 1014 CSILNIM 1020 (1050)
Q Consensus 1014 ~~~~~~~ 1020 (1050)
++++-..
T Consensus 1178 vS~V~~I 1184 (1200)
T KOG0964|consen 1178 VSTVDEI 1184 (1200)
T ss_pred cccceee
Confidence 8666443
No 6
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1e-78 Score=663.81 Aligned_cols=985 Identities=16% Similarity=0.208 Sum_probs=523.1
Q ss_pred CCCCCceEEEEEEecccccc-eEEE-ecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCC-----
Q 001581 16 DDYMPGNIIEIELHNFMTFD-HLIC-KPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGE----- 88 (1050)
Q Consensus 16 ~~~~~~~i~~l~l~nF~~~~-~~~i-~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~----- 88 (1050)
.+-+-+.|..|.+.||+||+ ...| +|.+.||+|+|||||||||++||+.||||-++.+. |..+++++||.+.
T Consensus 79 ~~~~RL~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~ki-R~~klS~LIh~S~~~~~l 157 (1293)
T KOG0996|consen 79 AGGPRLMITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASKI-RSKKLSALIHKSDGHPNL 157 (1293)
T ss_pred CCCCeeeehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhHH-hHHHHHHHHhccCCCCCC
Confidence 44566899999999999999 5555 68999999999999999999999999999998876 8899999999543
Q ss_pred ceeEEEEEEEeCC----------CCceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHH
Q 001581 89 ESGYIKISLRGDT----------KEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEF 158 (1050)
Q Consensus 89 ~~a~v~i~~~~~~----------~~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~ 158 (1050)
.+|.|+|.|.--. +|..++|+|+.+++++|.|+|||+..+.+++..+|..-||+.++-.|+|-||.|.++
T Consensus 158 ~SCsV~vhFq~iiD~~~~~~E~vp~s~~~ItRtA~~~NsSkY~Ingk~as~~~V~~lLk~~gIDleHNRFLILQGEVE~I 237 (1293)
T KOG0996|consen 158 QSCSVEVHFQKIIDKPGGTYEVVPDSEFTITRTAFRDNSSKYYINGKEASFKDVTKLLKSHGIDLEHNRFLILQGEVEQI 237 (1293)
T ss_pred cceeEEEeeeeeeccCCCceeecCCCeeEEEehhhhCCCceEeECCccccHHHHHHHHHhcCCCCccceeeeehhhHHHH
Confidence 3599999997321 246799999999999999999999999999999999999999988899999999999
Q ss_pred hcCCh-------HHHHHHHHHhhCCCChhHHHHHHHHH----HhhHHHHHHHHHH-------------------------
Q 001581 159 AKLSP-------VKLLEETEKAVGDPQLPVQHCALVEK----SSKLKTIECTVKR------------------------- 202 (1050)
Q Consensus 159 ~~~~~-------~~~~~~~~~~~g~~~l~~~~~~l~~~----~~~~~~~~~~l~~------------------------- 202 (1050)
+.|+| ..++..++.++|+..|...+..+..- ...+.+....+.-
T Consensus 238 A~MKPk~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel 317 (1293)
T KOG0996|consen 238 AMMKPKAQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENEL 317 (1293)
T ss_pred HhcCCCCCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999 67999999999998887765542221 1111100000000
Q ss_pred --------------HHHHHHHHHHHHH----HHHHHHHHHH----HHHHHH--------HHHHHHHhhcchh--chHHHH
Q 001581 203 --------------NGDTLNQLKALNV----EQEKDVERVR----QRAELL--------EKVESMKKKLPWL--KYDMKK 250 (1050)
Q Consensus 203 --------------~~~~l~~~~~~~~----~l~~~~~~l~----~~~~~~--------~~~~~l~~~~~~~--~~~~~~ 250 (1050)
....+......+. .++...+.+. .+.+.. +....+......+ .+..+.
T Consensus 318 ~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e 397 (1293)
T KOG0996|consen 318 FRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLE 397 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111111111 1111111110 000000 0000000000000 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccchHhhH-------HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHhhh-----
Q 001581 251 AEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGK-------KQEKAILDGDCKKLSSLINENSKRRMDFLEKVDQ----- 318 (1050)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 318 (1050)
.+....++.++.+...+.++.++++....++.++ ...+...+.++..+..........+.+....+..
T Consensus 398 ~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~ 477 (1293)
T KOG0996|consen 398 REDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGI 477 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 1112222222222222222222222222222222 2222222222222222222111111111111111
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 319 GVQVQGKYKEMQELRRQEQSRQQRILKAREELAAAELDLQTVPA-YEPPHDKIEKLGSQILELGVQANQKRLQKSEKEKI 397 (1050)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 397 (1050)
..++..++.++.....++..+..++.-.+.++..+...-..... ++.+...+......+.+....+..+...+..++.+
T Consensus 478 ~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e 557 (1293)
T KOG0996|consen 478 REEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQE 557 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 11222222222222222222222222222222222211111110 12222222222222222223333333333333333
Q ss_pred HHHhHHHHHHHHHHHHHhhhHHHHHHHHHhccC-----cccHHHHHHHHHHh--hcccCCcccccceeEEeeCCcchHHH
Q 001581 398 LNQNKLTLRQCSDRLKDMEDKNNKLLHALRNSG-----AENIFEAYCWLQQH--RHELNKEAYGPVLLEVNVSNRAHANY 470 (1050)
Q Consensus 398 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~-----~~~~~~~~~~l~~~--~~~~~~~~~g~~~~~i~~~~~~~~~~ 470 (1050)
+.+....+..+......+...+..+.+++.... ...-...+..|.+. .+.+ .+++|.++++-.+ |++|..|
T Consensus 558 ~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i-~Gf~GRLGDLg~I-d~kYDvA 635 (1293)
T KOG0996|consen 558 LKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRI-PGFYGRLGDLGAI-DEKYDVA 635 (1293)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCC-Ccccccccccccc-chHHHHH
Confidence 333333333333333333222222222221100 01112233333322 1334 6899999977654 6899999
Q ss_pred HHhhhcccccceEEeechhhHHHHHhhcCCCCcceEeecCCCCCC-----CCCCCChHHHHhcCccccccccccCc-HHH
Q 001581 471 LEDHVGHYIWKSFITQDAGDRDFLAKNLKPFDVPILNYVSNESSR-----KEPFQISEEMRALGISARLDQVFDAP-HAV 544 (1050)
Q Consensus 471 ie~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 544 (1050)
|.++.+. +.++||++..++..++..++.+++++.+|...+... ..|... +--..++.|++.+. +.+
T Consensus 636 IsTac~~--LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~i~t------penvPRLfDLv~~~d~~~ 707 (1293)
T KOG0996|consen 636 ISTACAR--LDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAPITT------PENVPRLFDLVKCKDEKF 707 (1293)
T ss_pred HHHhccc--cceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCCCCC------CCCcchHhhhhccCCHHH
Confidence 9995443 578999999999999999998888877776544321 112111 11223567888875 888
Q ss_pred HHHHHhhcCCcccccCCCcchhhhhHhhhcCc-ceEEcCCceEEEEeeccCCccceeeecccCCcc---c-cccCChHHH
Q 001581 545 KEVLISQFGLDSSYIGSKETDQKADNVAKLGI-LDFWTPENHYRWSISRYGGHVSASVEPVNQSRL---L-LCSVDGNEI 619 (1050)
Q Consensus 545 ~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~-~~~~~~~~~ 619 (1050)
.+++-.+++ .+ +|+++.+-+..+.....+ .++||.+|.+.-. +|.+|++|..+..++. + ..+......
T Consensus 708 r~aFYfaLr--dt-LV~d~LeQAtRiaygk~rr~RVvTL~G~lIe~----SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v 780 (1293)
T KOG0996|consen 708 RPAFYFALR--DT-LVADNLEQATRIAYGKDRRWRVVTLDGSLIEK----SGTMTGGGKKVKGGRMGTSIRVTGVSKESV 780 (1293)
T ss_pred HHHHHHHHh--hh-hhhcCHHHHHHHhhcCCCceEEEEecceeecc----cccccCCCCcCCCCCCCCccccCCCCHHHH
Confidence 888887775 33 566665555455555444 5789999876322 3566665554433311 1 001112222
Q ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH
Q 001581 620 ERLRSKKKKLE--------------ESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKR----------KR 675 (1050)
Q Consensus 620 ~~l~~~~~~l~--------------~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~----------~~ 675 (1050)
..+...+.... +.+..+...+..++..++.+....+.+...+..+..++..++. .+
T Consensus 781 ~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l 860 (1293)
T KOG0996|consen 781 EKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRL 860 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHH
Confidence 33322222222 2222222222222222222222222222222222222222111 11
Q ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHHH----------------------HHHHHHHHHHHHHHHHHH------------
Q 001581 676 REMENHINLRKRKLESIEKEDDINTALA----------------------KLVDQAADLNIQQFKYAI------------ 721 (1050)
Q Consensus 676 ~~l~~~l~~~~~~l~~l~~~~~~~~~~~----------------------~l~~~~~~l~~~~~~~~~------------ 721 (1050)
..++..+..++.+++++.+......++. .+..++..+...+.....
T Consensus 861 ~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~ 940 (1293)
T KOG0996|consen 861 KELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKA 940 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHH
Confidence 2222333333333333321100011111 222222222222111111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Q 001581 722 --EIKNLLVEIVSCKWSYAEKHMASIEFDAKIRELEFNLKQHEKLALQASLHYEDCKKEVEHCRKHLSDAKR-------Q 792 (1050)
Q Consensus 722 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~-------~ 792 (1050)
.+..+...+.....++..+...+..+.....++..++.+..+.+.++...+..+...+........+++. .
T Consensus 941 q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K 1020 (1293)
T KOG0996|consen 941 QKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENK 1020 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 1111111111122212112111111111111111122222222222222222222222222222211111 0
Q ss_pred HHHhhcCChHH-------HHHH---------h---cc---cCCHHH---------HHHHHHHHHHhhhhccCCCHHHHHH
Q 001581 793 AESIAFITPEL-------EKEF---------L---EM---PTTIEE---------LEAAIQDNISQANSIFFLNQNILQE 841 (1050)
Q Consensus 793 ~~~~~~~~~~~-------~~~~---------~---~~---~~~~~~---------l~~~i~~l~~~l~~l~~~~~~~~~~ 841 (1050)
++.......+. .... + .. ....++ +...+.-++.+++.++.++..++.+
T Consensus 1021 ~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~tE~~~~~~~~~~~~Eeleae~~~~~i~e~i~~lE~~~~~l~~vd~~~i~e 1100 (1293)
T KOG0996|consen 1021 LEAINGELNEIESKIKQPEKELKKLSLCNMTETRPQIELDVESPEELEAEMLEDNINEKIALLEKRVEELREVDLGVIAE 1100 (1293)
T ss_pred HHHHHHHHHHHHhhhhhHHHhhCccccccchhhccccccccCChHHHHhhhcHhhHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 11000000000 0000 0 00 011222 2334566788888887788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcceEEEee-cCCCcccccceE
Q 001581 842 YEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLD-EHESDFDKFGIL 920 (1050)
Q Consensus 842 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~f~~~f~~l~~~g~~~l~-~~~~~~~~~~l~ 920 (1050)
|......|......+...........+.+..++......|+.-|.-|+.+...+|+.++.||.+.|. .|..||+..||.
T Consensus 1101 Y~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~RldEFm~gf~~Is~kLkemYQmIT~GGdAeLElVDslDPFseGV~ 1180 (1293)
T KOG0996|consen 1101 YAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIISMKLKEMYQMITLGGDAELELVDSLDPFSEGVM 1180 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEeeccCCCcccCce
Confidence 9999999999999999999999999999999999999999999999999999999999999998887 678888999999
Q ss_pred EEEEecCCCCcccccccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEE
Q 001581 921 IKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLL 1000 (1050)
Q Consensus 921 i~v~~~~~~~~~~~~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~i 1000 (1050)
|+|.|| .+ .| -.+..||||||++++|||.|||+.|.|+||||||||||+||-.|+..|+.|+.+-.. +.|||||
T Consensus 1181 FSVrPp-KK-SW-K~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTk---NAQFIII 1254 (1293)
T KOG0996|consen 1181 FSVRPP-KK-SW-KNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTK---NAQFIII 1254 (1293)
T ss_pred EEeeCc-hh-hh-hhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhcc---CCeEEEE
Confidence 999986 32 33 346679999999999999999999999999999999999999999999999997765 9999999
Q ss_pred cCCC--------CCCCCCCCCeEEEEEecCCC
Q 001581 1001 TPKL--------LPDLEYSEACSILNIMNGPW 1024 (1050)
Q Consensus 1001 Tp~~--------l~~l~~~~~~~~~~~~~~~~ 1024 (1050)
+... |-|++..+++|=-..+|++.
T Consensus 1255 SLRnnMFELa~rLvGIYKtdn~Tksvti~~~~ 1286 (1293)
T KOG0996|consen 1255 SLRNNMFELANRLVGIYKTDNCTKSVTINPVE 1286 (1293)
T ss_pred EehhhHHHHHhhheeeEeecCccceeEechhh
Confidence 9772 66888888887666677443
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=2.9e-77 Score=762.75 Aligned_cols=947 Identities=17% Similarity=0.249 Sum_probs=546.6
Q ss_pred eEEEEEEecccccc-eEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhc-----CCceeEEEE
Q 001581 22 NIIEIELHNFMTFD-HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKR-----GEESGYIKI 95 (1050)
Q Consensus 22 ~i~~l~l~nF~~~~-~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~-----g~~~a~v~i 95 (1050)
+|++|.|.||+||. .++|+|+||+|+|+||||||||||+|||+|||||.+....|+..+.++|+. +...|+|.+
T Consensus 1 ~i~~l~l~nf~s~~~~~~i~f~~~~~~i~G~NGsGKS~ildAi~~~l~~~~~~~~r~~~~~~~i~~~~~~~~~~~~~v~~ 80 (1164)
T TIGR02169 1 YIERIELENFKSFGKKKVIPFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGNEAYVTV 80 (1164)
T ss_pred CeeEEEEeCeeeECCeeEEeecCCeEEEECCCCCCHHHHHHHHHHHhccchhhhhhhhhHHHhhcccccCCCCceEEEEE
Confidence 58999999999999 699999999999999999999999999999999998877898889999988 345799999
Q ss_pred EEEeCCCC--ceEEEEEEEec--CCc-eeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHHhcCChHHHHHHH
Q 001581 96 SLRGDTKE--EHLTIMRKIDT--RNK-SEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEET 170 (1050)
Q Consensus 96 ~~~~~~~~--~~~~i~R~~~~--~~~-~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~~~~~~ 170 (1050)
+|.++++. ..+.|.|++.+ +|. +.|++||.+++..++.+++..+|+++++| .++.||.+..|+.++|.+++.+|
T Consensus 81 ~f~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~~~~~-~~~~qg~~~~~~~~~~~~r~~~~ 159 (1164)
T TIGR02169 81 TFKNDDGKFPDELEVVRRLKVTDDGKYSYYYLNGQRVRLSEIHDFLAAAGIYPEGY-NVVLQGDVTDFISMSPVERRKII 159 (1164)
T ss_pred EEEcCCCCCCCcEEEEEEEEEcCCCCcceEEECCccccHHHHHHHHHHcCCCcCcc-eEEecchHHHHHCCCHHHHHHHH
Confidence 99874322 35888888765 555 78999999999999999999999999987 67889999999999999999999
Q ss_pred HHhhCCCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchHHHH
Q 001581 171 EKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKK 250 (1050)
Q Consensus 171 ~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 250 (1050)
+.++| +..+..++..+...+..+...+.++...+..|+.+++.++++.+...++..+...+....+....
T Consensus 160 ~~~~g----------~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~ 229 (1164)
T TIGR02169 160 DEIAG----------VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELL 229 (1164)
T ss_pred HHHhC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 55667788888888999999999999999999999999999988888888888776666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccchHhhHHHHHHhHHhhHHHHHHH---------------HHHHHHHHHHHHHH
Q 001581 251 AEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSL---------------INENSKRRMDFLEK 315 (1050)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~ 315 (1050)
..+..+...+..+..++..+...+..+..++..+...+..+...+..+... +..+...+..+...
T Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 309 (1164)
T TIGR02169 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERS 309 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 555444444444444444444443333333333333333222222222222 22222222221111
Q ss_pred hhh---------------hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CC-CCCChhhHHH
Q 001581 316 VDQ---------------GVQVQGKYKEMQELRRQEQSRQQRILKAREELAAAELDLQTV-------PA-YEPPHDKIEK 372 (1050)
Q Consensus 316 ~~~---------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~-~~~~~~~~~~ 372 (1050)
+.. ...+..+..++..+...+..+..++......+..++..+... .. +..+......
T Consensus 310 ~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 389 (1164)
T TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111222222222222222222222222222222222221111 10 1111112222
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHH--------------HHH------
Q 001581 373 LGSQ-------ILELGVQANQKRLQKSEKEKILNQNKLTLRQCSDRLKDMEDKNNKL--------------LHA------ 425 (1050)
Q Consensus 373 ~~~~-------l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~--------------~~~------ 425 (1050)
+..+ +..+..++..+..++..+...+..+...+..+..++..++..+... ...
T Consensus 390 ~~~~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 469 (1164)
T TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQ 469 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2223333333333333333333333333333222222221111111 000
Q ss_pred --------HhccCc------ccH---H-------------HHHHHHHHhhcccCCcccccceeEEeeCCcchHHHHHhhh
Q 001581 426 --------LRNSGA------ENI---F-------------EAYCWLQQHRHELNKEAYGPVLLEVNVSNRAHANYLEDHV 475 (1050)
Q Consensus 426 --------l~~~~~------~~~---~-------------~~~~~l~~~~~~~~~~~~g~~~~~i~~~~~~~~~~ie~~l 475 (1050)
+..... ..+ . ..+..+.. .. ..+++|++++++.+. +.|..+|+.++
T Consensus 470 ~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~--~~-~~g~~g~l~dli~v~-~~y~~Aie~~l 545 (1164)
T TIGR02169 470 ELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLK--AS-IQGVHGTVAQLGSVG-ERYATAIEVAA 545 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHh--cC-CCCceecHHHhcCcC-HHHHHHHHHHh
Confidence 000000 000 0 11111111 11 246788899999985 89999999999
Q ss_pred cccccceEEeechhhHHHHHhhcCCCCcceEeecCCCCCCCCCCCChHHHHhcCccccccccccCcHHHHHHHHhhcCCc
Q 001581 476 GHYIWKSFITQDAGDRDFLAKNLKPFDVPILNYVSNESSRKEPFQISEEMRALGISARLDQVFDAPHAVKEVLISQFGLD 555 (1050)
Q Consensus 476 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 555 (1050)
|+. +.++||++..++..++.+++..+.|.++|.|.+.....+... ......|+.+++.+++.+++.+.+++..++|
T Consensus 546 g~~-l~~ivv~~~~~a~~~i~~l~~~~~gr~tflpl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~lg-- 621 (1164)
T TIGR02169 546 GNR-LNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDL-SILSEDGVIGFAVDLVEFDPKYEPAFKYVFG-- 621 (1164)
T ss_pred hhh-hCCEEECCHHHHHHHHHHHHhcCCCCeeeccHhhcCCCCCCc-ccccCCCchHHHHHHccCcHHHHHHHHHHCC--
Confidence 986 467999999999999999987666666665543221111000 1111245666677899999999999999887
Q ss_pred ccccCCCcchhhhhHhhhcCcceEEcCCceEEEEeeccCCccceeeecccCC-ccccccCChHHHHHHHHHHHHHHHHHH
Q 001581 556 SSYIGSKETDQKADNVAKLGILDFWTPENHYRWSISRYGGHVSASVEPVNQS-RLLLCSVDGNEIERLRSKKKKLEESVD 634 (1050)
Q Consensus 556 ~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~ 634 (1050)
.+ ++|++.+.+..+.. ..++||++|.+..+ +|.+|+++.. ..+ +++... ....+..+..++..+...+.
T Consensus 622 ~~-~v~~~l~~a~~~~~---~~~~vTldG~~~~~----~G~~tgG~~~-~~~~~~~~~~-~~~~l~~l~~~l~~l~~~l~ 691 (1164)
T TIGR02169 622 DT-LVVEDIEAARRLMG---KYRMVTLEGELFEK----SGAMTGGSRA-PRGGILFSRS-EPAELQRLRERLEGLKRELS 691 (1164)
T ss_pred Ce-EEEcCHHHHHHHhc---CCcEEEeCceeEcC----CcCccCCCCC-CCCCcccccc-cHHHHHHHHHHHHHHHHHHH
Confidence 33 45555555545542 23789999876322 2455544311 111 111110 01233333333333333333
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------HHHHHHHh
Q 001581 635 ELEESLKSMQTEQRLIE-------DEAAKLQKEREEIINIVQIE-------KRKRREMENHINLR-------KRKLESIE 693 (1050)
Q Consensus 635 ~l~~~l~~l~~~~~~~~-------~~~~~l~~~~~~~~~~l~~~-------~~~~~~l~~~l~~~-------~~~l~~l~ 693 (1050)
.+...+..+..++..+. ..+..+..++..+...+..+ ...+..+...+..+ ...+..+.
T Consensus 692 ~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~el~~l~~~i~~l~ 771 (1164)
T TIGR02169 692 SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE 771 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332222222222 22222222222211111111 11111111111111 11111111
Q ss_pred hc-ccH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHH
Q 001581 694 KE-DDI-------------------NTALAKLVDQAADLNIQQFKYAIEIKNLLVEIVS-------CKWSYAEKHMASIE 746 (1050)
Q Consensus 694 ~~-~~~-------------------~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~ 746 (1050)
.. ..+ ...+..+..++..+...+..+..++..+...+.. +...+..+...+..
T Consensus 772 ~~i~~l~~el~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~~~~~~ 851 (1164)
T TIGR02169 772 EDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS 851 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 0011122222222222222222111111111111 11111111111111
Q ss_pred H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhcCChH---
Q 001581 747 F--------------DAKIRELEFNLKQHEKLALQASLHYEDCKKEVEHCRKHLSDAKR-------QAESIAFITPE--- 802 (1050)
Q Consensus 747 ~--------------~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~--- 802 (1050)
+ ...+..+...+..+...+..+...+..+...+..+...+..+.. .+..+......
T Consensus 852 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 931 (1164)
T TIGR02169 852 IEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE 931 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111111111111111111111111111111111111111 11110000000
Q ss_pred ----HHHHHh---cc---cCCHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 803 ----LEKEFL---EM---PTTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDA 872 (1050)
Q Consensus 803 ----~~~~~~---~~---~~~~~~l~~~i~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~ 872 (1050)
+..... .. ......+..++..+..++..++++|..++++|+.+..+|.++..+++++......+...|..
T Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~ 1011 (1164)
T TIGR02169 932 ELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEE 1011 (1164)
T ss_pred HHHHhhhhhhhhhhcccccCCHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 11 22467888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhcCCcceEEEee-cCCCcccccceEEEEEecCCCCcccccccccCchhHHHHHHHH
Q 001581 873 LKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLD-EHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILY 951 (1050)
Q Consensus 873 l~~~~~~~~~~~~~~i~~~f~~~f~~l~~~g~~~l~-~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lal 951 (1050)
++..+...|..+|..|+.+|..+|+.|+ ||.+.|. .+++++..+|+.|.|.|++. .. ..+..||||||++++||+
T Consensus 1012 l~~~~~~~f~~~f~~~~~~f~~~~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~lSgge~~~~~la~ 1087 (1164)
T TIGR02169 1012 YEKKKREVFMEAFEAINENFNEIFAELS-GGTGELILENPDDPFAGGLELSAKPKGK-PV--QRLEAMSGGEKSLTALSF 1087 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEecCCCCcccCCeEEEEEcCCC-CC--CcchhcCcchHHHHHHHH
Confidence 9999999999999999999999999999 8887776 46667778999999998643 32 345679999999999999
Q ss_pred HHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 952 LVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 952 l~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+||+|.+.|+|||||||||+|||+.|+.+++.+|...+. ++|||||||+.
T Consensus 1088 ~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~---~~~~i~~t~~~ 1137 (1164)
T TIGR02169 1088 IFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG---EAQFIVVSLRS 1137 (1164)
T ss_pred HHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC---CCeEEEEECcH
Confidence 999999999999999999999999999999998887754 69999999995
No 8
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.5e-76 Score=639.84 Aligned_cols=948 Identities=17% Similarity=0.229 Sum_probs=557.0
Q ss_pred CceEEEEEEecccccc-eEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCceeEEEEEEE
Q 001581 20 PGNIIEIELHNFMTFD-HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLR 98 (1050)
Q Consensus 20 ~~~i~~l~l~nF~~~~-~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~ 98 (1050)
||++..|+|.||+||. +..|.|..+||+|+|||||||||+||||.||||..++.. |+..+.|+|+.-...+.|++.|.
T Consensus 1 ~g~L~~lEieNFKSYkGh~~iGPF~~FTaIIGPNGSGKSNlMDAISFVLGekss~L-R~~~lkdLIyg~~i~~~v~l~Y~ 79 (1141)
T KOG0018|consen 1 MGRLLTLEIENFKSYKGHQVIGPFDRFTAIIGPNGSGKSNLMDAISFVLGEKSSHL-RVSHLKDLIYGKPIRKPVTLKYE 79 (1141)
T ss_pred CCceeeeehhccccccCceeecCchhceeeeCCCCCchHHHHHHHHHHhcCCCccc-ccchHHHHhcCCccCCchhheee
Confidence 6899999999999999 777877678999999999999999999999999999876 99999999985556677887777
Q ss_pred eCCCCceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHHhcCChHHHHHHHHHhhCCCC
Q 001581 99 GDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVGDPQ 178 (1050)
Q Consensus 99 ~~~~~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~~~g~~~ 178 (1050)
- ++|....++|.|. +|+|+|.|||..++.+++..-+..+||-+....+.+.||.|..++..+|.++-.+|++++|...
T Consensus 80 ~-~dg~~~~F~R~I~-~G~seY~IDne~VT~eeY~~eLekinIlVkARNFLVFQGdVE~IA~k~PkElt~LFEEISgSiE 157 (1141)
T KOG0018|consen 80 E-GDGETRRFTRAIN-GGTSEYMIDNEIVTREEYLEELEKINILVKARNFLVFQGDVEKIAGKNPKELTALFEEISGSIE 157 (1141)
T ss_pred c-CCchhhhhhhhhc-CCceeEEEcceeccHHHHHHHHhhcceeeeeeeEEEecChHHHHhccCHHHHHHHHHHHhhhhh
Confidence 5 5778999999999 8999999999999999999999999999888777889999999999999999999999999887
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchHHHHHHHHHHHH
Q 001581 179 LPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKKAEYIAAKE 258 (1050)
Q Consensus 179 l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 258 (1050)
|...++.+ +.+...+.......-.....+.....+.+......+.|..+.++.......+..+.+-.....+..+..
T Consensus 158 lK~EYeel---K~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~ 234 (1141)
T KOG0018|consen 158 LKPEYEEL---KYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKAND 234 (1141)
T ss_pred hhHHHHHH---HHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhH
Confidence 77776644 445555555555555566666666666666667777777777777777776655555555666666666
Q ss_pred HHHHHHHHHHHHHhhcccccchHhhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH------HHHhhh-hHhHHHHHHHHHH
Q 001581 259 QEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDF------LEKVDQ-GVQVQGKYKEMQE 331 (1050)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~l~~ 331 (1050)
++...+..+..+.........++.....+......++..+...+......+.+. ..+... ...+......+..
T Consensus 235 els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~ 314 (1141)
T KOG0018|consen 235 ELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDIET 314 (1141)
T ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHH
Confidence 666666666666666555555555555444444444444444444444443331 111111 1222222222222
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHhhcCCC---------------CCCC--------hhhHH----------
Q 001581 332 LRR-------QEQSRQQRILKAREELAAAELDLQTVPA---------------YEPP--------HDKIE---------- 371 (1050)
Q Consensus 332 ~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~--------~~~~~---------- 371 (1050)
.+. .+..++.++..+....+..+.+++.... +..+ ..++.
T Consensus 315 ~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~ 394 (1141)
T KOG0018|consen 315 AKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQ 394 (1141)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 222 2222222222222222222222211100 0000 00000
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---------------------HhhhHHHHHHHHH
Q 001581 372 ----KLGSQILELGVQANQKRLQKSEKEKILNQNKLTLRQCSDRLK---------------------DMEDKNNKLLHAL 426 (1050)
Q Consensus 372 ----~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~---------------------~l~~~~~~~~~~l 426 (1050)
.......++++.+..+...+..+...+..+...+..+..... .+..++...+..+
T Consensus 395 ~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql 474 (1141)
T KOG0018|consen 395 DTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQL 474 (1141)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 001111122222222222222222222222211111111111 1122222222222
Q ss_pred hccCc-----ccHHHHHHHHHHhhcccCCcccccceeEEeeCCcchHHHHHhhhcccccceEEeechhhHHHHHhhcCCC
Q 001581 427 RNSGA-----ENIFEAYCWLQQHRHELNKEAYGPVLLEVNVSNRAHANYLEDHVGHYIWKSFITQDAGDRDFLAKNLKPF 501 (1050)
Q Consensus 427 ~~~~~-----~~~~~~~~~l~~~~~~~~~~~~g~~~~~i~~~~~~~~~~ie~~l~~~~~~~~~v~~~~~~~~~~~~l~~~ 501 (1050)
-.+.. .........+.....+| ++++|.+.++++....+|..++..++|.+. .+++|++...+..++.+++..
T Consensus 475 ~das~dr~e~sR~~~~~eave~lKr~f-Pgv~GrviDLc~pt~kkyeiAvt~~Lgk~~-daIiVdte~ta~~CI~ylKeq 552 (1141)
T KOG0018|consen 475 LDASADRHEGSRRSRKQEAVEALKRLF-PGVYGRVIDLCQPTQKKYEIAVTVVLGKNM-DAIIVDTEATARDCIQYLKEQ 552 (1141)
T ss_pred HhhhhhhcccHHHHHHHHHHHHHHHhC-CCccchhhhcccccHHHHHHHHHHHHhccc-ceEEeccHHHHHHHHHHHHHh
Confidence 11100 01111112222223344 578899999998877889999999999965 679999999999999999999
Q ss_pred CcceEeecCCCCCCCCCCCChHHHHhcCccccccccccCcHHHHHHHHhhcCCcccccCCCcchhhhhHhhhcCc-ceEE
Q 001581 502 DVPILNYVSNESSRKEPFQISEEMRALGISARLDQVFDAPHAVKEVLISQFGLDSSYIGSKETDQKADNVAKLGI-LDFW 580 (1050)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~v 580 (1050)
+.+..+|.|.+.....|.. ..++.+|-...+.|++.+++.|..++..++| . .++|+..+.+.++.+..+. ...|
T Consensus 553 r~~~~TFlPld~i~v~~~~--e~lr~~~g~rlv~Dvi~ye~e~eka~~~a~g--n-~Lvcds~e~Ar~l~y~~~~r~k~v 627 (1141)
T KOG0018|consen 553 RLEPMTFLPLDSIRVKPVN--EKLRELGGVRLVIDVINYEPEYEKAVQFACG--N-ALVCDSVEDARDLAYGGEIRFKVV 627 (1141)
T ss_pred ccCCccccchhhhhcCccc--ccccCcCCeEEEEEecCCCHHHHHHHHHHhc--c-ceecCCHHHHHHhhhcccccceEE
Confidence 8887887776654322322 1222333344667899999999999999998 3 2777887778777775554 2566
Q ss_pred cCCceEEEEeeccCCccceeeecccCCccccccCChHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 001581 581 TPENHYRWSISRYGGHVSASVEPVNQSRLLLCSVDGNEIERLRSKKKKLEESVDELEE---SLKSMQTEQRLIEDEAAKL 657 (1050)
Q Consensus 581 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~---~l~~l~~~~~~~~~~~~~l 657 (1050)
+.+|.+... +|.+|+++.. +. |. ...+..|......+..++.++.. ++..++..+..++..+.-+
T Consensus 628 aldGtl~~k----sGlmsGG~s~---~~-wd----ek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~ 695 (1141)
T KOG0018|consen 628 ALDGTLIHK----SGLMSGGSSG---AK-WD----EKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYS 695 (1141)
T ss_pred EeeeeEEec----cceecCCccC---CC-cC----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 666654322 1233322211 11 11 12344444444444444433322 1111222222222222222
Q ss_pred HHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHhhc-------------cc------
Q 001581 658 QKEREEIINIVQIE---------------------KRKRREMENHINLRKRKLESIEKE-------------DD------ 697 (1050)
Q Consensus 658 ~~~~~~~~~~l~~~---------------------~~~~~~l~~~l~~~~~~l~~l~~~-------------~~------ 697 (1050)
..++..++..+... ...+...+..++.++.....+++. ..
T Consensus 696 ~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~ 775 (1141)
T KOG0018|consen 696 KLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL 775 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH
Confidence 22222211111111 111111222222222222222111 00
Q ss_pred ---HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------------HHHHH
Q 001581 698 ---INTALAKLVDQAADLNIQQF-----KYAIEIKNLLVEIVSCKWSYAEKHMASIEFDAK--------------IRELE 755 (1050)
Q Consensus 698 ---~~~~~~~l~~~~~~l~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~l~ 755 (1050)
...+..+++.++..+..++. ....++..+...+..++.+++.+...-..+... .....
T Consensus 776 ~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~~~~~~~ 855 (1141)
T KOG0018|consen 776 QQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKSKFEKKE 855 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 00011111111111111110 000011111122222222222111111111111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------h----cCC--------hHHHHHHhcccCCHHHH
Q 001581 756 FNLKQHEKLALQASLHYEDCKKEVEHCRKHLSDAKRQAESI------A----FIT--------PELEKEFLEMPTTIEEL 817 (1050)
Q Consensus 756 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~----~~~--------~~~~~~~~~~~~~~~~l 817 (1050)
.++.+.+.....+...+..+...+...+..+.........+ . ++. .-..-.+..+|..+. +
T Consensus 856 ~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d~~~~ieidy~~L~~~y~-L 934 (1141)
T KOG0018|consen 856 DEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCKLEDIEVPLSSGSMDDIVIGIEIDYSGLPREYK-L 934 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCccccceecccccccccHHHH-H
Confidence 12222222222222223333333333333222222111100 0 000 001113444555555 8
Q ss_pred HHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 001581 818 EAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQ 897 (1050)
Q Consensus 818 ~~~i~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~f~~~f~ 897 (1050)
+.+|.+....++.+ ..|..|.+.|+.+. +......++..++.-..+....+.+.......|..+|+.|+.+...+|+
T Consensus 935 ~~kl~e~~~~l~~~-~Pn~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak~~F~~VK~~R~~~F~~~F~~va~~Id~IYK 1011 (1141)
T KOG0018|consen 935 QQKLEEKQSVLNRI-APNLKALERLDEVR--FQEINEEFEAARKEAKKAKNAFNKVKKKRYERFMACFEHVADNIDRIYK 1011 (1141)
T ss_pred HHHHHHHHHHHHHh-CcchHHHhhhhhHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999 68889999999998 9999999999999999999999999999999999999999999999999
Q ss_pred cCC-cceEEEee-cCCCcccccceEEEEEecCCCCcccccccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCCh
Q 001581 898 EMA-VAGEVSLD-EHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDP 975 (1050)
Q Consensus 898 ~l~-~~g~~~l~-~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~ 975 (1050)
.|+ ..|.+.|. .+++.|.-.||.....|| |+.++ +|..||||||+++|||||||++.+.||||+|||||||+||.
T Consensus 1012 ~Ltnt~g~AyL~~en~~EPyl~GIky~~~pP-~KRFr--~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDn 1088 (1141)
T KOG0018|consen 1012 ELTNTEGQAYLGLENPEEPYLDGIKYHCMPP-GKRFR--PMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDN 1088 (1141)
T ss_pred HhcccccceeecCCCCCcchhcCccccccCC-ccccC--chhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhh
Confidence 996 33777776 566677778999888875 66544 55669999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 976 INERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 976 ~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.|+.+|+.+|. .++.||||||.+.
T Consensus 1089 tNi~kvasyIr-----~~~~Q~IvISLK~ 1112 (1141)
T KOG0018|consen 1089 TNIGKVASYIR-----SSNFQFIVISLKE 1112 (1141)
T ss_pred ccHHHHHHHHh-----cCCceEEEEeccH
Confidence 99999999998 2489999999883
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=100.00 E-value=4.6e-65 Score=654.25 Aligned_cols=265 Identities=19% Similarity=0.323 Sum_probs=223.2
Q ss_pred eEEEEEEecccccc-eEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCC------ceeEEE
Q 001581 22 NIIEIELHNFMTFD-HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGE------ESGYIK 94 (1050)
Q Consensus 22 ~i~~l~l~nF~~~~-~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~------~~a~v~ 94 (1050)
+|.+|.|.||+||. .++|+|+||+|+|+||||||||||++||+||||+.++...|+.++.++|+.|+ ..++|+
T Consensus 1 ~i~~l~~~nf~s~~~~~~i~f~~~~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~~~~~~~v~ 80 (1179)
T TIGR02168 1 RLKKLELAGFKSFADPTTINFDKGITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGSETRKPLSLAEVE 80 (1179)
T ss_pred CeeEEEEeCccccCCCeeEEecCCcEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCCcccCCCCeeEEE
Confidence 48999999999997 57999999999999999999999999999999999888889999999999987 368999
Q ss_pred EEEEeCC------CCceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHHhcCChHHHHH
Q 001581 95 ISLRGDT------KEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLE 168 (1050)
Q Consensus 95 i~~~~~~------~~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~~~~ 168 (1050)
++|.+.+ ++..++|.|++.++|.+.|++||.+++..++..++..+||+++++ +|++||++..|+.++|.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~-~~~~q~~~~~~~~~~~~~~~~ 159 (1179)
T TIGR02168 81 LVFDNSDGLLPGADYSEISITRRLYRDGESEYFINGQPCRLKDIQDLFLDTGLGKRSY-SIIEQGKISEIIEAKPEERRA 159 (1179)
T ss_pred EEEecCCCCCCCCCCCeEEEEEEEeeCCCceeeECCCcccHHHHHHHHhccCCCcccc-hheecccHHHHHcCCHHHHHH
Confidence 9998643 135699999999888899999999999999999999999999887 799999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchHH
Q 001581 169 ETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDM 248 (1050)
Q Consensus 169 ~~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 248 (1050)
+|+.++| +..+...+..+..++..+...+.++...+..|+.+.+.++.|.....++..++..+....+..
T Consensus 160 ~~~~~~~----------~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~ 229 (1179)
T TIGR02168 160 IFEEAAG----------ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELAL 229 (1179)
T ss_pred HHHHHcc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 556677888889999999999999999999999999999999999999999988887777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchHhhHHHHHHhHHhhHHH
Q 001581 249 KKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKK 297 (1050)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1050)
+..++..+...+..+...+..+...+..+...+..+...+..+...+..
T Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 278 (1179)
T TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE 278 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655555555555544444444444444333333
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=100.00 E-value=1.3e-48 Score=476.16 Aligned_cols=161 Identities=17% Similarity=0.203 Sum_probs=126.7
Q ss_pred ceEEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCceeEEEEEEEeC
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1050)
|+|.+|.|.||++|++++|+|+||+|+|+||||||||||++||+|+|||.++.. ..+.++|+.|...++|+++|.+
T Consensus 1 M~i~~l~l~nf~~~~~~~~~f~~g~~~i~G~Ng~GKStil~ai~~~l~g~~~~~---~~~~~~~~~~~~~~~v~~~f~~- 76 (880)
T PRK02224 1 MRFDRVRLENFKCYADADLRLEDGVTVIHGVNGSGKSSLLEACFFALYGSKALD---DTLDDVITIGAEEAEIELWFEH- 76 (880)
T ss_pred CeEEEEEEECcccccceEEecCCCeEEEECCCCCCHHHHHHHHHHHhCCCcccc---ccHHHHHhCCCCcEEEEEEEEE-
Confidence 899999999999999999999999999999999999999999999999987632 3678899999999999999985
Q ss_pred CCCceEEEEEEEecCCc----eeEE-ECCee--cCHHHHHHHHH-HcCcccccc--cccccchhhHHHhcCChHHHHHHH
Q 001581 101 TKEEHLTIMRKIDTRNK----SEWF-FNGKV--VPKGEVLEITK-RFNIQVNNL--TQFLPQDRVCEFAKLSPVKLLEET 170 (1050)
Q Consensus 101 ~~~~~~~i~R~~~~~~~----~~~~-~~g~~--~~~~~~~~~~~-~~~i~~~~~--~~~l~q~~~~~~~~~~~~~~~~~~ 170 (1050)
++..|.|.|++.++|+ ..|. .+|.. ....++...+. .+|++.+.| +.+++||.+..|+.++|.++..+|
T Consensus 77 -~~~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~llg~~~~~f~~~~~i~Qge~~~~l~~~p~~R~~ii 155 (880)
T PRK02224 77 -AGGEYHIERRVRLSGDRATTAKCVLETPEGTIDGARDVREEVTELLRMDAEAFVNCAYVRQGEVNKLINATPSDRQDMI 155 (880)
T ss_pred -CCEEEEEEEEEecCCCCcccceeEEeCCCccccChHHHHHHHHHHHCCCHHHhcceeEeeccChHHHHcCCHHHHHHHH
Confidence 6789999999876442 2333 23321 12333333332 456654433 357899999999999999999999
Q ss_pred HHhhCCCChhHHHHHH
Q 001581 171 EKAVGDPQLPVQHCAL 186 (1050)
Q Consensus 171 ~~~~g~~~l~~~~~~l 186 (1050)
.+++|...|.+....+
T Consensus 156 ~~l~~l~~~e~~~~~~ 171 (880)
T PRK02224 156 DDLLQLGKLEEYRERA 171 (880)
T ss_pred HHHhCCHHHHHHHHHH
Confidence 9999986665544433
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=100.00 E-value=3.3e-45 Score=448.52 Aligned_cols=198 Identities=20% Similarity=0.225 Sum_probs=142.0
Q ss_pred ceEEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCceeEEEEEEEeC
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1050)
|+|.+|.|.||+||...+|+|+||+|+|+||||||||||++||+|+|||..+...|+....+|++.|...+.|.++|..
T Consensus 1 m~i~~l~i~nf~~~~~~~i~f~~g~~~i~G~nG~GKStil~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~- 79 (880)
T PRK03918 1 MKIEELKIKNFRSHKSSVVEFDDGINLIIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKDDFTRIGGSGTEIELKFEK- 79 (880)
T ss_pred CeeEEEEEeCccCccCceEecCCCcEEEEcCCCCCHHHHHHHHHHHhcCCCCCCccccChhhcccCCCCCEEEEEEEEE-
Confidence 8999999999999998899999999999999999999999999999998655444555667999999999999999984
Q ss_pred CCCceEEEEEEEecCCceeEEE-CCe---ecCHHHHHHHHHH-cCcccccccccccchhhHHHhcCChHHHHHHHHHhhC
Q 001581 101 TKEEHLTIMRKIDTRNKSEWFF-NGK---VVPKGEVLEITKR-FNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175 (1050)
Q Consensus 101 ~~~~~~~i~R~~~~~~~~~~~~-~g~---~~~~~~~~~~~~~-~~i~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~~~g 175 (1050)
+|..|+|.|.+.+ |.+.+.+ +|. ....+++...+.. ++.+...-..|++||.+..|+. +|.+|..+|..++|
T Consensus 80 -~~~~~~i~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~~~Qg~~~~~~~-~~~~r~~~~~~~~~ 156 (880)
T PRK03918 80 -NGRKYRIVRSFNR-GESYLKYLDGSEVLEEGDSSVREWVERLIPYHVFLNAIYIRQGEIDAILE-SDESREKVVRQILG 156 (880)
T ss_pred -CCeEEEEEEEEcC-CceEEEECCCCeeecccHHHHHHHHHHhcCHHHhceeEEEeccchHHHhc-CcHHHHHHHHHHhC
Confidence 6889999999987 3343333 443 2344555555553 3322211135789999999986 78999999999999
Q ss_pred CCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 176 DPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVE 222 (1050)
Q Consensus 176 ~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~ 222 (1050)
...|......+......+......+......+..+...+..++.++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~ 203 (880)
T PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELE 203 (880)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887666655444433333333333333333333333343333333
No 12
>PRK01156 chromosome segregation protein; Provisional
Probab=100.00 E-value=3.6e-43 Score=427.27 Aligned_cols=196 Identities=20% Similarity=0.240 Sum_probs=148.8
Q ss_pred ceEEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCceeEEEEEEEeC
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1050)
|+|.+|+|.||+||+.++|+|+||+|+|+||||||||||++||+|||||.++ +....++|+.|...|+|+++|..
T Consensus 1 M~i~~l~l~NF~s~~~~~i~f~~gi~~I~G~NGsGKSsileAI~~aL~g~~~----~~~~~~~i~~~~~~~~V~l~f~~- 75 (895)
T PRK01156 1 MIIKRIRLKNFLSHDDSEIEFDTGINIITGKNGAGKSSIVDAIRFALFTDKR----TEKIEDMIKKGKNNLEVELEFRI- 75 (895)
T ss_pred CeEEEEEEeCccCCCCceEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc----cccHHHHhhCCCCeEEEEEEEEE-
Confidence 8999999999999999999999999999999999999999999999999753 33568999999999999999985
Q ss_pred CCCceEEEEEEEecCCc-----eeEEECCeecC--HHHHHHHHH--HcCcccccc--cccccchhhHHHhcCChHHHHHH
Q 001581 101 TKEEHLTIMRKIDTRNK-----SEWFFNGKVVP--KGEVLEITK--RFNIQVNNL--TQFLPQDRVCEFAKLSPVKLLEE 169 (1050)
Q Consensus 101 ~~~~~~~i~R~~~~~~~-----~~~~~~g~~~~--~~~~~~~~~--~~~i~~~~~--~~~l~q~~~~~~~~~~~~~~~~~ 169 (1050)
+|..|+|.|.+.++|+ ..|+.||..++ ..++...+. .+|++.+.| +.|++||.+..|+.++|.+|+.+
T Consensus 76 -~g~~y~i~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~il~~~~~~f~~~i~~~Qg~~~~l~~~~~~~r~~~ 154 (895)
T PRK01156 76 -GGHVYQIRRSIERRGKGSRREAYIKKDGSIIAEGFDDTTKYIEKNILGISKDVFLNSIFVGQGEMDSLISGDPAQRKKI 154 (895)
T ss_pred -CCEEEEEEEEEecCCCCCCceEEEecCCeeccccHHHHHHHHHHHHcCCCHHHhceeEEEeccchHHHHhCCHHHHHHH
Confidence 6789999999976332 34667997665 457777664 577775544 35789999999999999999999
Q ss_pred HHHhhCCCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 170 TEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVE 222 (1050)
Q Consensus 170 ~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~ 222 (1050)
|..++|...|...++.+......+......+......+..+...+..+..++.
T Consensus 155 ld~~~~~~~~~~~~~~~~~~~~~~~~ei~~le~~~~~l~~~e~eL~~~~~~i~ 207 (895)
T PRK01156 155 LDEILEINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIA 207 (895)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988777665554444433333333333333333333333333333333
No 13
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=100.00 E-value=3e-40 Score=397.34 Aligned_cols=162 Identities=26% Similarity=0.381 Sum_probs=132.3
Q ss_pred ceEEEEEEecccccceEEEe--cCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCceeEEEEEEE
Q 001581 21 GNIIEIELHNFMTFDHLICK--PGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLR 98 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~~~~i~--f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~ 98 (1050)
|+|.+|.|.||+||.+.+|. |++|||+|+||||||||||+|||+|+|||..+..+ +.+..++|+.|...+.|+++|.
T Consensus 1 M~i~~L~L~Nf~S~~~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~-~~~~~~~i~~g~~~~~V~l~F~ 79 (908)
T COG0419 1 MKILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLG-AFSLDDLIRAGEKSASVELEFE 79 (908)
T ss_pred CCCeeeehcccccccccceeecCCCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc-chhhhHHHhcCCccEEEEEEEE
Confidence 89999999999999988888 99999999999999999999999999999998664 5688899999999999999999
Q ss_pred eCCCCceEEEEEEEecCCc------eeEEECCeec--CHHHHHHHHH-HcCcccccc--cccccchhhHHHhcCChHHHH
Q 001581 99 GDTKEEHLTIMRKIDTRNK------SEWFFNGKVV--PKGEVLEITK-RFNIQVNNL--TQFLPQDRVCEFAKLSPVKLL 167 (1050)
Q Consensus 99 ~~~~~~~~~i~R~~~~~~~------~~~~~~g~~~--~~~~~~~~~~-~~~i~~~~~--~~~l~q~~~~~~~~~~~~~~~ 167 (1050)
+ +|..|.|.|.+.++++ +.-..+|..+ ...++...+. .+|++.+.| +.+++||.+..|+.++|.++.
T Consensus 80 ~--~g~~Y~i~R~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl~~~~~er~ 157 (908)
T COG0419 80 V--NGKKYRIEREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYLPQGEFDAFLKSKPKERK 157 (908)
T ss_pred E--CCEEEEEEeeeccccCCCccchhhcccCcchhhhhhhhHHHHHHHHhCCCHHHHhHHheeccHhHHHHHhcCcHHHH
Confidence 4 8999999999888444 1112234322 2335666555 677765443 568899999999999999999
Q ss_pred HHHHHhhCCCChhHHHHH
Q 001581 168 EETEKAVGDPQLPVQHCA 185 (1050)
Q Consensus 168 ~~~~~~~g~~~l~~~~~~ 185 (1050)
.++.+++|...|......
T Consensus 158 ~il~~l~~l~~~e~~~~~ 175 (908)
T COG0419 158 EILDELFGLEKYEKLSEL 175 (908)
T ss_pred HHHHHHhCchhHHHHHHH
Confidence 999999997765544443
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.7e-37 Score=379.72 Aligned_cols=165 Identities=16% Similarity=0.274 Sum_probs=124.5
Q ss_pred eEEEEEEecccccc-----eEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhc------CCce
Q 001581 22 NIIEIELHNFMTFD-----HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKR------GEES 90 (1050)
Q Consensus 22 ~i~~l~l~nF~~~~-----~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~------g~~~ 90 (1050)
+|.+|.|.||+||+ .++|+|++|+|+|+||||||||||++||+|||||..+...+| ..||+. +...
T Consensus 2 ~~~kl~i~g~rSf~~~~~~~~~I~F~~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g---~~~i~~~~~~~~~~~~ 78 (1311)
T TIGR00606 2 KFLKMSILGVRSFGIEDKDKQIIDFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKG---NTFVHDPKVAQETDVR 78 (1311)
T ss_pred ccceeeeeceecCCCccccceeeecccceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC---ceEecCCCcCccHhhh
Confidence 58899999999995 578999999999999999999999999999999987654333 235543 2346
Q ss_pred eEEEEEEEeCCCCceEEEEEEEec--CCc----------eeEEECCeecC----HHHHH-HHHHHcCcccccc--ccccc
Q 001581 91 GYIKISLRGDTKEEHLTIMRKIDT--RNK----------SEWFFNGKVVP----KGEVL-EITKRFNIQVNNL--TQFLP 151 (1050)
Q Consensus 91 a~v~i~~~~~~~~~~~~i~R~~~~--~~~----------~~~~~~g~~~~----~~~~~-~~~~~~~i~~~~~--~~~l~ 151 (1050)
|.|.++|.+ .+|..|+|.|.+.. .++ ..|+.+|..++ ..++. .+...+|++...| ..|++
T Consensus 79 a~V~l~F~~-~~g~~~~v~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~e~~~~i~~~lGv~~~~f~~vi~~~ 157 (1311)
T TIGR00606 79 AQIRLQFRD-VNGEECAVVRSMVCTQKTKKTEFKTLEGVITRYKHGEKVSLSSKCAEIDREMISHLGVSKAVLNNVIFCH 157 (1311)
T ss_pred heeEEEEEc-CCCCEEEEEeeeeeeeccCcccchhhhhhheecCCCceeeccccHHHHHHHHHHHhCCCHHHHhhceeeC
Confidence 999999964 46788999998843 111 24556775433 23563 4555788885544 34788
Q ss_pred chhhHHHhcCChHHHHHHHHHhhCCCChhHHHHHHHHHHh
Q 001581 152 QDRVCEFAKLSPVKLLEETEKAVGDPQLPVQHCALVEKSS 191 (1050)
Q Consensus 152 q~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~l~~~~~ 191 (1050)
||.+. |+.+.|.++...|++++|+..|....+.+.....
T Consensus 158 Qge~~-~~~~~~~~rk~~~d~if~~~~y~k~~~~~~~~~k 196 (1311)
T TIGR00606 158 QEDSN-WPLSEGKALKQKFDEIFSATRYIKALETLRQVRQ 196 (1311)
T ss_pred Ccccc-cccCChHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99995 6778999999999999999999887766554443
No 15
>PRK04863 mukB cell division protein MukB; Provisional
Probab=100.00 E-value=1.1e-32 Score=332.90 Aligned_cols=277 Identities=14% Similarity=0.107 Sum_probs=152.4
Q ss_pred CCceEEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCccc---ccc-----cc--hhhhhhcC-
Q 001581 19 MPGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLL---GRA-----TS--IGAYVKRG- 87 (1050)
Q Consensus 19 ~~~~i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~---~r~-----~~--~~~~i~~g- 87 (1050)
..++|++|.|.||++|...+|+|++++++|+|||||||||+|+||+++|++..... +.+ .. -.++....
T Consensus 3 ~~~ki~~l~l~N~~~~~~~~~~f~~~~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~~~~~~~~~~~r~l~~~l~ 82 (1486)
T PRK04863 3 ERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLK 82 (1486)
T ss_pred CCceeeEEEEecccCccceEEEecCCeEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcccccccccccccchhcccC
Confidence 45899999999999999999999999999999999999999999999997554321 110 01 11222111
Q ss_pred CceeEEEEEEEeCCCCceEEEEEEE--ecC--Cc---eeEEECCe--------------------ecCHHHHHHHHHH-c
Q 001581 88 EESGYIKISLRGDTKEEHLTIMRKI--DTR--NK---SEWFFNGK--------------------VVPKGEVLEITKR-F 139 (1050)
Q Consensus 88 ~~~a~v~i~~~~~~~~~~~~i~R~~--~~~--~~---~~~~~~g~--------------------~~~~~~~~~~~~~-~ 139 (1050)
...+++.++|.++ .+..++|.=.+ ..+ +. ..|++.|. +.+..++...+.. +
T Consensus 83 ~~~~Y~~lef~d~-~~~~~~~GV~l~~~a~~~~~~~~~~F~i~~~~~~v~~~d~l~~~~~~~~~~~~ti~Elk~~i~e~~ 161 (1486)
T PRK04863 83 AGVCYAALDVVNS-RGQRVLVGVRLQQVAGRDRKVDIKPFAIQGLPDSVQPTDLLTETVNERQARVLTLNELKDKAAALE 161 (1486)
T ss_pred CCceEEEEEEEeC-CceEEEEEEEEEeecCCCCCcCceeEEEecCccccChHHHHHHhhcccccccCCHHHHHHHHHHhc
Confidence 2468888888764 33323332223 222 11 22444321 2334455555542 3
Q ss_pred Cccccccc-------ccccchhhHHHhcCChHHHHHHHHHhhCCCCh--------------------------hHH----
Q 001581 140 NIQVNNLT-------QFLPQDRVCEFAKLSPVKLLEETEKAVGDPQL--------------------------PVQ---- 182 (1050)
Q Consensus 140 ~i~~~~~~-------~~l~q~~~~~~~~~~~~~~~~~~~~~~g~~~l--------------------------~~~---- 182 (1050)
|..+..|+ .+++||.+..|+.++ .++.. |.++++...+ ...
T Consensus 162 Gl~~~qF~ri~~Y~~~Ll~qG~f~~~L~a~-~dR~k-F~kLf~taiy~~i~~~i~~fl~~yll~e~~~v~~~i~~m~~~l 239 (1486)
T PRK04863 162 GVQFKQFNSITDYHSLMFDLGIIPRRLRSS-SDRSK-FYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAAL 239 (1486)
T ss_pred CCceeeeccHHHHHHHHHHCCCchhhhhcc-chHHH-HHHHHHHHHHhhHHHhHHHHHHHHcCCCChhhhHHHHHHHHHH
Confidence 45442332 256788877776553 33322 2222221111 000
Q ss_pred ---------------------------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 183 ---------------------------------------------HCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQ 217 (1050)
Q Consensus 183 ---------------------------------------------~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l 217 (1050)
.++...++.++.++...+...+.++.++.+.+.++
T Consensus 240 ~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~EL 319 (1486)
T PRK04863 240 RENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAEL 319 (1486)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122344666777777777777888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--hhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHhhHHHHHHhHHhhH
Q 001581 218 EKDVERVRQRAELLEKVESMKKKLP--WLKYDMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDC 295 (1050)
Q Consensus 218 ~~~~~~l~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1050)
..++..|+...+...++..+..... ...+......+..+...+......+......+..+..++..++.++..++.++
T Consensus 320 e~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqL 399 (1486)
T PRK04863 320 NEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQL 399 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766666666655554311 12333334444444444444444444444444444444444444444333333
Q ss_pred HHH
Q 001581 296 KKL 298 (1050)
Q Consensus 296 ~~~ 298 (1050)
..+
T Consensus 400 ael 402 (1486)
T PRK04863 400 ADY 402 (1486)
T ss_pred HHH
Confidence 333
No 16
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=100.00 E-value=6.5e-32 Score=326.82 Aligned_cols=164 Identities=21% Similarity=0.263 Sum_probs=127.3
Q ss_pred ceEEEEEEecccccc-eEEEecC------CceeEEEcCCCCChhHHHHHHHHHhcCCCcccccc-cchhhhhhcCCceeE
Q 001581 21 GNIIEIELHNFMTFD-HLICKPG------SRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRA-TSIGAYVKRGEESGY 92 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~-~~~i~f~------~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~-~~~~~~i~~g~~~a~ 92 (1050)
|+|.+|.|.||++|. ..+|+|. .|+++|+||||||||||+|||||+|||.++...+. ..+.+++..|+..++
T Consensus 1 Mk~~~l~~~nf~s~~~~~~idf~~~~l~~~~l~~I~G~tGaGKStildai~~aLyg~~~r~~~~~~~~~~~~~~~~~~~~ 80 (1047)
T PRK10246 1 MKILSLRLKNLNSLKGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRDTAECL 80 (1047)
T ss_pred CcceEEEeecceeEcCCceEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhcCCCCCccccccchhhhhhCCCcceE
Confidence 899999999999997 6788884 68999999999999999999999999999865443 356889999999999
Q ss_pred EEEEEEeCCCCceEEEEEEEec-----CCc------eeEEE-CCeec--CHHHHHHHH-HHcCccccccc--ccccchhh
Q 001581 93 IKISLRGDTKEEHLTIMRKIDT-----RNK------SEWFF-NGKVV--PKGEVLEIT-KRFNIQVNNLT--QFLPQDRV 155 (1050)
Q Consensus 93 v~i~~~~~~~~~~~~i~R~~~~-----~~~------~~~~~-~g~~~--~~~~~~~~~-~~~~i~~~~~~--~~l~q~~~ 155 (1050)
|+|+|.. +|..|.|.|...+ +|. ..|.+ +|..+ ...++...+ ..+|++.+.|+ .++|||.+
T Consensus 81 v~~~F~~--~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~i~~llgl~~~~F~~~v~l~QG~f 158 (1047)
T PRK10246 81 AEVEFEV--KGEAYRAFWSQNRARNQPDGNLQAPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQF 158 (1047)
T ss_pred EEEEEEE--CCeEEEEEeehhhcccCCCCccccccceeeEcCCCCeeccCchHHHHHHHHHhCCCHHHhhhheeeccccH
Confidence 9999974 5778999876533 121 01222 23222 224555443 36788877663 48899999
Q ss_pred HHHhcCChHHHHHHHHHhhCCCChhHHHHHH
Q 001581 156 CEFAKLSPVKLLEETEKAVGDPQLPVQHCAL 186 (1050)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~l 186 (1050)
..|+.++|.+|..++++++|+..|......+
T Consensus 159 ~~fl~a~~~eR~~il~~l~g~~~y~~~~~~l 189 (1047)
T PRK10246 159 AAFLNAKPKERAELLEELTGTEIYGQISAMV 189 (1047)
T ss_pred HHHHhCChHHHHHHHHHHhCcHHHHHHHHHH
Confidence 9999999999999999999988876554433
No 17
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.7e-32 Score=289.12 Aligned_cols=188 Identities=19% Similarity=0.186 Sum_probs=155.4
Q ss_pred cCCHHHHHHHHHHHHHhhhhccCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001581 811 PTTIEELEAAIQDNISQANSIFFLN--QNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQI 888 (1050)
Q Consensus 811 ~~~~~~l~~~i~~l~~~l~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i 888 (1050)
.+++.++...+..+..++..+.... ..+..++...+.++++....|..+.-....+.+.|..+.+...+.+...+..
T Consensus 787 ~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~rlP~vi~~A~~- 865 (984)
T COG4717 787 DEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERRLPAVIQEASE- 865 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHH-
Confidence 3456777888888888888887544 4788999999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHhcCCcceEEEeecCCCcccccceEEEEEecCCCCcccccccccCchhHHHHHHHHHHHhcc----cCCCCce
Q 001581 889 NETFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQD----LTNCPFR 964 (1050)
Q Consensus 889 ~~~f~~~f~~l~~~g~~~l~~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lall~al~~----~~~~Pf~ 964 (1050)
+|..++.|.+-.+..+. ..-.|+|..+.|+ ...+..||.|.+-.+++|+.||+.. ..|-||
T Consensus 866 ------~F~hlT~G~Yt~Iy~~e-----~~d~I~V~~~~G~---~~~~~ELSqgT~EQLYlAlRfali~~~~~~~~LP~- 930 (984)
T COG4717 866 ------FFMHLTDGRYTGIYTQE-----DKDSIIVEHRAGG---SKLAEELSQGTKEQLYLALRFALIHEVRTREPLPF- 930 (984)
T ss_pred ------HHhhccCCceeeeeccc-----CCceeEEEecccc---cccHHHHhhhHHHHHHHHHHHHHHhhhccCCCCCe-
Confidence 99999999998887222 1245899988776 4566779999999999999999754 467888
Q ss_pred EeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC-CCC-CCCCCCeEEE
Q 001581 965 VVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL-LPD-LEYSEACSIL 1017 (1050)
Q Consensus 965 vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~-l~~-l~~~~~~~~~ 1017 (1050)
|+|+++++||+.+..+++.+|.+++. +.|+|+||+|. .-+ ..-++.++++
T Consensus 931 i~DD~fVhFD~~R~~r~~e~l~dls~---~~QviYFTCHe~~~d~~~s~~vI~l~ 982 (984)
T COG4717 931 IADDIFVHFDDERAKRMLELLADLSE---GNQVIYFTCHEHTCDAFPSSEVITLH 982 (984)
T ss_pred eeccchhccCHHHHHHHHHHHHHhcc---CCeEEEEEechhhhcccccccceeec
Confidence 89999999999999999999999876 99999999773 222 2334555655
No 18
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.6e-31 Score=325.34 Aligned_cols=164 Identities=17% Similarity=0.232 Sum_probs=125.9
Q ss_pred ceEEEEEEecccccc-eEEEecCC--ceeEEEcCCCCChhHHHHHHHHHhcCCCccccccc-chhhhhhcCCceeEEEEE
Q 001581 21 GNIIEIELHNFMTFD-HLICKPGS--RLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRAT-SIGAYVKRGEESGYIKIS 96 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~-~~~i~f~~--~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~-~~~~~i~~g~~~a~v~i~ 96 (1050)
|+|.+|+|.||+||. ..+|+|++ |+++|+||||||||||+|||||||||.++..++.. .+.++...|+..++|+++
T Consensus 1 M~~~~L~l~nf~s~~~~~~idF~~~~gl~~I~G~nGaGKSTildAI~~aL~G~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 80 (1042)
T TIGR00618 1 MKPLRLTLKNFGSYKGTHTIDFTALGPIFLICGKTGAGKTTLLDAITYALYGKLPRRSEVIRSLNSLYAAPSEAAFAELE 80 (1042)
T ss_pred CeeeEEEEeCeeccCCCceeeecCCCCeEEEECCCCCCHHHHHHHHHHHhcCCCCCCCccccccchhhcCCCCCeEEEEE
Confidence 899999999999998 56899987 99999999999999999999999999987544422 334445566778999999
Q ss_pred EEeCCCCceEEEEEEEec-----CCceeE---EE----CCeec--CHHHHHHHHH-HcCcccccc--cccccchhhHHHh
Q 001581 97 LRGDTKEEHLTIMRKIDT-----RNKSEW---FF----NGKVV--PKGEVLEITK-RFNIQVNNL--TQFLPQDRVCEFA 159 (1050)
Q Consensus 97 ~~~~~~~~~~~i~R~~~~-----~~~~~~---~~----~g~~~--~~~~~~~~~~-~~~i~~~~~--~~~l~q~~~~~~~ 159 (1050)
|.. +|..|.|.|.+.+ +|...+ .+ +|..+ ...++...+. .+|++++.| +.+++||.+..|+
T Consensus 81 F~~--~g~~y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~llGld~~~F~~~~~l~Qg~~~~fl 158 (1042)
T TIGR00618 81 FSL--GTKIYRVHRTLRCTRSHRKTEQPEQLYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTFTRVVLLPQGEFAQFL 158 (1042)
T ss_pred EEE--CCEEEEEEEeeeeeccCCCCcchhhhhhhhcCCCCcccccchHHHHHHHHHHhCCCHHHHhhheeecccchHHHH
Confidence 974 6788888887653 122111 11 12222 2356666554 688887766 4688999999999
Q ss_pred cCChHHHHHHHHHhhCCCChhHHHHHH
Q 001581 160 KLSPVKLLEETEKAVGDPQLPVQHCAL 186 (1050)
Q Consensus 160 ~~~~~~~~~~~~~~~g~~~l~~~~~~l 186 (1050)
.++|.+|..+|++++|+..|......+
T Consensus 159 ~a~~~eR~~il~~l~g~~~y~~~~~~~ 185 (1042)
T TIGR00618 159 KAKSKEKKELLMNLFPLDQYTQLALME 185 (1042)
T ss_pred hCCHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 999999999999999988887665443
No 19
>PF13514 AAA_27: AAA domain
Probab=100.00 E-value=2.8e-29 Score=308.96 Aligned_cols=190 Identities=16% Similarity=0.195 Sum_probs=144.9
Q ss_pred cCCHHHHHHHHHHHHHhhhhccCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001581 811 PTTIEELEAAIQDNISQANSIFFLN--QNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQI 888 (1050)
Q Consensus 811 ~~~~~~l~~~i~~l~~~l~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i 888 (1050)
...+.++...+..++..+..+.... ..+..+++....++.....+|..+.....-+...+..+.....+++...+..
T Consensus 909 ~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r~~~~p~vl~~As~- 987 (1111)
T PF13514_consen 909 EEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEELAEEWAALRLAAELLEEAIERYREERQPPVLARASE- 987 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-
Confidence 3445555566666677777776433 2677788888999999999999999999999999999988888877666655
Q ss_pred HHHHHHHHhcCCcceEEEeecCCCcccccceEEEEEecCCCCcccccccccCchhHHHHHHHHHHHhcc-----cCCCCc
Q 001581 889 NETFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQD-----LTNCPF 963 (1050)
Q Consensus 889 ~~~f~~~f~~l~~~g~~~l~~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lall~al~~-----~~~~Pf 963 (1050)
+|..|+.|.+..|..+. +..+..+.|...+|. .+++..||+|.+-.++|||.||+.. ..|.||
T Consensus 988 ------~f~~LT~G~Y~~l~~d~---d~~~~~l~~~~~~G~---~~~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~ 1055 (1111)
T PF13514_consen 988 ------YFSRLTGGRYSRLRVDE---DGDKPVLVVVRADGE---RVPVEELSRGTRDQLYLALRLALAELLAEQGEPLPF 1055 (1111)
T ss_pred ------HHHHHhCCCCceeeecc---ccCcccceEEecCCe---EeeHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcE
Confidence 99999999887766222 122333455555454 5677779999999999999999643 467888
Q ss_pred eEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC-----CCCCCCCCCeEEEE
Q 001581 964 RVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL-----LPDLEYSEACSILN 1018 (1050)
Q Consensus 964 ~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~-----l~~l~~~~~~~~~~ 1018 (1050)
|+||+++++|+.+...++++|.+++. .+||||||||. ...+ +.+.+.||.
T Consensus 1056 -IlDD~fvnfDd~R~~~~l~~L~~ls~---~~QVI~FTch~~l~~~a~~~-~~~~v~v~~ 1110 (1111)
T PF13514_consen 1056 -ILDDIFVNFDDERARAALELLAELSR---RRQVIYFTCHEHLVELAREV-FGDRVNVHE 1110 (1111)
T ss_pred -EeeCCccccCHHHHHHHHHHHHHhcc---CCeEEEEeccHHHHHHHHHh-cCCCCceee
Confidence 88999999999999999999999886 78999999993 2223 566777773
No 20
>PRK10869 recombination and repair protein; Provisional
Probab=100.00 E-value=3.5e-31 Score=295.59 Aligned_cols=137 Identities=22% Similarity=0.311 Sum_probs=117.8
Q ss_pred EEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCceeEEEEEEEeCC-
Q 001581 23 IIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGDT- 101 (1050)
Q Consensus 23 i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~~- 101 (1050)
|.+|+|.||++|..++|+|+||+|+|+||||||||+|++||.|+||+++ ..++|++|+..|.|+++|...+
T Consensus 2 L~~L~I~nf~~i~~~~i~f~~glnvitGetGaGKS~ildAi~~llG~r~--------~~~~ir~g~~~a~Ve~~F~~~~~ 73 (553)
T PRK10869 2 LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGRA--------EASMVRPGATRADLCARFSLKDT 73 (553)
T ss_pred ccEEEEcccccceeeEEecCCCcEEEECCCCCChHHHHHHHHHHhCCCc--------ccccccCCCCcEEEEEEEecCCC
Confidence 6899999999999999999999999999999999999999999998743 2588999999999999997532
Q ss_pred -------------CCceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHHhcCChHHHHH
Q 001581 102 -------------KEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLE 168 (1050)
Q Consensus 102 -------------~~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~~~~ 168 (1050)
++..++|+|.+.++|++.|+|||.+++.+.+.++...+ + .+.+|+.. ..-++|...+.
T Consensus 74 ~~~~~~l~~~~~~~~~~~~i~R~i~~~g~s~~~INg~~v~~~~l~~l~~~l-i------~ihgQ~~~--~~ll~~~~~~~ 144 (553)
T PRK10869 74 PAALRWLEDNQLEDGNECLLRRVISSDGRSRGFINGTPVPLSQLRELGQLL-I------QIHGQHAH--QLLLKPEHQKT 144 (553)
T ss_pred hHHHHHHHhcCCCCCCeEEEEEEEecCCcceEEECCeeccHHHHHHHHHhh-h------heeCcChH--HHhcCHHHHHH
Confidence 23579999999999999999999999999999987655 2 44556543 34489999999
Q ss_pred HHHHhhCC
Q 001581 169 ETEKAVGD 176 (1050)
Q Consensus 169 ~~~~~~g~ 176 (1050)
+++..+|.
T Consensus 145 lLD~~~~~ 152 (553)
T PRK10869 145 LLDAYANE 152 (553)
T ss_pred HHHHhccc
Confidence 99998885
No 21
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=100.00 E-value=7.2e-25 Score=270.52 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=68.4
Q ss_pred cccccCchhHHHHHHHHHHH----hccc----CCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 001581 935 SAHHQSGGERSVSTILYLVS----LQDL----TNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLP 1006 (1050)
Q Consensus 935 ~~~~lSGGErs~~~lall~a----l~~~----~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~ 1006 (1050)
.+..||||||.+++...+|| .|.. .+-++++|||+++++|+.+...++++|..+ +.|||++||.+--
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l-----~~~~i~~s~~~Wg 1318 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL-----DLDFVMTSEREWG 1318 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh-----CCCEEEEccchhc
Confidence 45779999999997655555 3331 233478999999999999999999988766 6799999999877
Q ss_pred CCCCCCCeEEEEEecCCCCC
Q 001581 1007 DLEYSEACSILNIMNGPWIE 1026 (1050)
Q Consensus 1007 ~l~~~~~~~~~~~~~~~~~~ 1026 (1050)
...-+|++.|.-++-+|..+
T Consensus 1319 ~Y~tVp~laI~el~R~~~~~ 1338 (1353)
T TIGR02680 1319 CYPEVPGLAICQLLRPDGVD 1338 (1353)
T ss_pred cccCCCcceEEEEecCCCCC
Confidence 67777999988877666544
No 22
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.97 E-value=5.4e-24 Score=242.82 Aligned_cols=163 Identities=17% Similarity=0.300 Sum_probs=119.4
Q ss_pred CceEEEEEEecccccc---eEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCC------ce
Q 001581 20 PGNIIEIELHNFMTFD---HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGE------ES 90 (1050)
Q Consensus 20 ~~~i~~l~l~nF~~~~---~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~------~~ 90 (1050)
|-.|.++.|.|.+||+ ..+|.|..++|+|+||||+|||||+.++.++..|..|.+.++ ..|||... ..
T Consensus 1 Ms~i~klsI~GIRSf~~~d~~~i~F~sPlTLIvG~NG~GKTTiIEcLKyatTG~lPpnsk~---~~FiHdpkIage~ev~ 77 (1294)
T KOG0962|consen 1 MSSIDKLSIRGIRSFDDKDRNTIEFFSPLTLIVGANGTGKTTIIECLKYATTGELPPNSKG---GSFIHDPKVAGETEVR 77 (1294)
T ss_pred CchhHhhHhhcccccCCcccceeeecCCeeeEecCCCCCchhHHHHHHHHhcCcCCCCCcC---CCCCCCccccchhhhh
Confidence 4678899999999999 567999888999999999999999999999999999887664 78888543 35
Q ss_pred eEEEEEEEeCCCCceEEEEEEEecCC-----------ceeEEEC-CeecC----HHHH-HHHHHHcCcc--ccccccccc
Q 001581 91 GYIKISLRGDTKEEHLTIMRKIDTRN-----------KSEWFFN-GKVVP----KGEV-LEITKRFNIQ--VNNLTQFLP 151 (1050)
Q Consensus 91 a~v~i~~~~~~~~~~~~i~R~~~~~~-----------~~~~~~~-g~~~~----~~~~-~~~~~~~~i~--~~~~~~~l~ 151 (1050)
|.|.+.|.+ .+|..+++.|++.-.. +.-+.++ |..++ -.++ ..+...+|++ +-+++.|..
T Consensus 78 AqvkL~f~~-~~G~~~~~~R~~qlt~k~~~~~~ktles~~~~~~~g~k~tlS~r~~d~d~~~~~~lGVskAIl~~VIFcH 156 (1294)
T KOG0962|consen 78 AQVKLAFTD-VNGETMICTRTIQLTQKRTKMEFKTLESVIWAINDGDRVTLSGRSADLDAEMPLHLGVSKAILENVIFCH 156 (1294)
T ss_pred heeeeeeec-CCCcEEEeehhhHHHHHHHHHHHHHHhhhheeeecCccccccchhhhhhHHHHHhcCCcHHHHhhhheec
Confidence 999999987 5789999999987521 2234444 43332 1233 3344588887 456677888
Q ss_pred chhhHHHhcCChHHHHHHHHHhhCCCChhHHHHHHH
Q 001581 152 QDRVCEFAKLSPVKLLEETEKAVGDPQLPVQHCALV 187 (1050)
Q Consensus 152 q~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~l~ 187 (1050)
|+...- .-..|..+..-|+.+++.+.|....+.+.
T Consensus 157 QEdS~W-PLsEp~~LKkkfD~IF~~tky~KAld~~k 191 (1294)
T KOG0962|consen 157 QEDSTW-PLSEPKNLKKKFDDIFSATKYTKALDSLK 191 (1294)
T ss_pred ccCCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876432 33567777777888887766666554433
No 23
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.5e-26 Score=245.27 Aligned_cols=184 Identities=18% Similarity=0.214 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001581 816 ELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLST---KQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETF 892 (1050)
Q Consensus 816 ~l~~~i~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~f 892 (1050)
++..++..+..-.++|+...+++.+.++++..++..+.. ....|......+...+.+.-..+..........+....
T Consensus 301 ~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v 380 (557)
T COG0497 301 EVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEV 380 (557)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445554445555555555555555443 35556666666666666666666667777778888888
Q ss_pred HHHHhcCC-cceEEEeecCC--Ccccccc---eEEEEEecCCCCcccccccccCchhHHHHHHHHHHHhcccCCCCceEe
Q 001581 893 SRNFQEMA-VAGEVSLDEHE--SDFDKFG---ILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVV 966 (1050)
Q Consensus 893 ~~~f~~l~-~~g~~~l~~~~--~~~~~~~---l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lall~al~~~~~~Pf~vl 966 (1050)
...++.|. ..+.+.+...+ .++..+| ++|.+++++|.|++|+ ..-.||||-|+++|||..++......|.+||
T Consensus 381 ~~eL~~L~Me~a~F~ve~~~~~~~~t~~G~d~VeF~istNpG~~~~PL-~KvASGGELSRimLAlk~i~~~~~~~ptlIF 459 (557)
T COG0497 381 TAELKALAMEKARFTVELKPLEESPTADGADKVEFLISTNPGEPLKPL-AKVASGGELSRIMLALKVILSRKDDTPTLIF 459 (557)
T ss_pred HHHHHhcCCCCceEEEEeccCCCCCCcCCcceEEEEEeCCCCCCCccH-HhhcchhHHHHHHHHHHHHHhccCCCCeEEE
Confidence 88999996 44666655222 1134455 8899999999999999 2339999999999999999999999999999
Q ss_pred eccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCC
Q 001581 967 DEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPK 1003 (1050)
Q Consensus 967 DEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~ 1003 (1050)
||||+|+.+.....|++.|..++. ++|||||||.
T Consensus 460 DEVD~GIsG~~A~aVg~~L~~Ls~---~~QVl~VTHl 493 (557)
T COG0497 460 DEVDTGISGRVAQAVGKKLRRLSE---HHQVLCVTHL 493 (557)
T ss_pred ecccCCCChHHHHHHHHHHHHHhc---CceEEEEecH
Confidence 999999999999999999999987 9999999987
No 24
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.97 E-value=2.4e-25 Score=257.99 Aligned_cols=156 Identities=23% Similarity=0.312 Sum_probs=105.7
Q ss_pred ceEEEEEEecccccc-eEEEecC----CceeEEEcCCCCChhHHHHHHHHHhcCCCcc-ccccc-chhhh----hhc---
Q 001581 21 GNIIEIELHNFMTFD-HLICKPG----SRLNLVIGPNGSGKSSLVCAIALALGGDTQL-LGRAT-SIGAY----VKR--- 86 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~-~~~i~f~----~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~-~~r~~-~~~~~----i~~--- 86 (1050)
|+|++|.|.||++|. ...|+|+ +++++|+||||+||||+++||.|||||..+. ..|+. +..+| ++.
T Consensus 1 M~i~~l~l~nf~~~~~~~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~LyG~~~~~~~~~~~~y~~~l~~~~n~~~~ 80 (650)
T TIGR03185 1 MIILQLTLENFGPYRGRQTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQLALYGKRALCSGRGNKSYEQYLRGLINRQAG 80 (650)
T ss_pred CcccEEEEeceEEEcCCceeeeecCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccccccCCccCcHHHHHHHHhcccCC
Confidence 899999999999997 4455553 4699999999999999999999999998764 33433 23333 332
Q ss_pred CCceeEEEEEEEeCCCC--ceEEEEEEEecCC---ceeE--EECCeecC--HHHHHHHHH-HcCcccccccccccchhhH
Q 001581 87 GEESGYIKISLRGDTKE--EHLTIMRKIDTRN---KSEW--FFNGKVVP--KGEVLEITK-RFNIQVNNLTQFLPQDRVC 156 (1050)
Q Consensus 87 g~~~a~v~i~~~~~~~~--~~~~i~R~~~~~~---~~~~--~~~g~~~~--~~~~~~~~~-~~~i~~~~~~~~l~q~~~~ 156 (1050)
+...+.|+++|...+++ ..|+|.|.|..++ +..+ +.+|.+.. .....+++. .++..+.++ ||++..++.
T Consensus 81 ~~~~~~V~l~f~~~~~~~~~~y~i~R~w~~~~k~~~~~l~v~~~~~~~~~~~~~~~~~i~~ilp~~~~~~-FfFDGE~I~ 159 (650)
T TIGR03185 81 KTNPASITLTFSVVEGGKRHEYTLVRSWHINNKDVKEKLTVYKDDEEDDSLNDIWDEFINELLPLELADL-FFFDGEKIE 159 (650)
T ss_pred CCCCeEEEEEEEEccCCceEEEEEEEEecCCCCCCCCcEEEEECCcccchhhHHHHHHHHHhCCHhHHHH-hcccHHHHH
Confidence 23578999999864443 5688999986532 2222 33553211 223444555 334445554 777878888
Q ss_pred HHhcC--ChHHHHHHHHHhhCCC
Q 001581 157 EFAKL--SPVKLLEETEKAVGDP 177 (1050)
Q Consensus 157 ~~~~~--~~~~~~~~~~~~~g~~ 177 (1050)
.++.. ++..+...+..++|..
T Consensus 160 ~la~~~~~~~~l~~Ai~~LlGl~ 182 (650)
T TIGR03185 160 ALANPDRLASLLKEAIEVLLGLD 182 (650)
T ss_pred HHhccccchHHHHHHHHHHhCcH
Confidence 88763 3444777888888854
No 25
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.97 E-value=9.5e-30 Score=255.83 Aligned_cols=123 Identities=28% Similarity=0.479 Sum_probs=103.7
Q ss_pred eEEEEEEeccccc--ceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhc-----CCceeEEE
Q 001581 22 NIIEIELHNFMTF--DHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKR-----GEESGYIK 94 (1050)
Q Consensus 22 ~i~~l~l~nF~~~--~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~-----g~~~a~v~ 94 (1050)
.|++|+|.||++| ...+++|+|++|+|+||||||||||++||.||||+.+.+..|.....++|+. ....|.|+
T Consensus 1 ~I~~l~i~nFr~~~~~~~~~~~~~~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~ 80 (220)
T PF02463_consen 1 MIKSLEIENFRNFKGKNAELSFSPGLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVE 80 (220)
T ss_dssp EEEEEEEESBTTC-SCEEEEETTSSEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEE
T ss_pred CccEEEEcCceEEecCeEEEecCCCCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Confidence 4899999999999 5889999999999999999999999999999999998888899999999987 45679999
Q ss_pred EEEEeCCC-----CceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccc
Q 001581 95 ISLRGDTK-----EEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVN 144 (1050)
Q Consensus 95 i~~~~~~~-----~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 144 (1050)
+.|.+.+. ...+.|.|.+.+++.+.|++|+.+++.+++..++...++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~ 135 (220)
T PF02463_consen 81 LIFDNSDEEFELDKKEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE 135 (220)
T ss_dssp EEEECTTEESSSSSSEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99986432 256999999999888999999999999999999988877654
No 26
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.97 E-value=1.5e-27 Score=277.29 Aligned_cols=369 Identities=15% Similarity=0.193 Sum_probs=219.3
Q ss_pred CceEEEEEEecccccce--EEEecC-CceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhh-cCCceeEEEE
Q 001581 20 PGNIIEIELHNFMTFDH--LICKPG-SRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVK-RGEESGYIKI 95 (1050)
Q Consensus 20 ~~~i~~l~l~nF~~~~~--~~i~f~-~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~-~g~~~a~v~i 95 (1050)
||+|++|+|.||+||+. ++|+|+ +|+|+|+||||||||||++||+|||||.+... ....+++. .+...+.|++
T Consensus 1 ~~~~~~l~l~nf~s~~~~~~~i~f~~~g~~~i~G~NG~GKStll~aI~~~l~G~~~~~---~~~~~~~~~~~~~~~~v~l 77 (562)
T PHA02562 1 MLKFKKIRYKNILSVGNQPIEIQLDKVKKTLITGKNGAGKSTMLEALTFALFGKPFRD---IKKGQLINSINKKDLLVEL 77 (562)
T ss_pred CceEEEEEEEcccccCCCceEEEEcCCCEEEEECCCCCCHHHHHHHHHHHHcCCCcCc---CCHHHhhccCCCCcEEEEE
Confidence 79999999999999984 589998 59999999999999999999999999988643 23345664 3556799999
Q ss_pred EEEeCCCCceEEEEEEEecCCceeEEECCeec----CHHHHHHHHH-HcCccccccc--ccccchhhHHHhcCChHHHHH
Q 001581 96 SLRGDTKEEHLTIMRKIDTRNKSEWFFNGKVV----PKGEVLEITK-RFNIQVNNLT--QFLPQDRVCEFAKLSPVKLLE 168 (1050)
Q Consensus 96 ~~~~~~~~~~~~i~R~~~~~~~~~~~~~g~~~----~~~~~~~~~~-~~~i~~~~~~--~~l~q~~~~~~~~~~~~~~~~ 168 (1050)
+|.. ++..|+|.|.+.. +...++.||.++ +.+++...+. .+|++.+.+. .++|||.+..|+.++|.++..
T Consensus 78 ~f~~--~~~~y~i~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~f~~~v~l~q~~f~~f~~~~~~er~~ 154 (562)
T PHA02562 78 WFEY--GEKEYYIKRGIKP-NVFEIYCNGKLLDESASSKDFQKYFEQMLGMNYKSFKQIVVLGTAGYVPFMQLSAPARRK 154 (562)
T ss_pred EEEE--CCEEEEEEEeccC-CeEEEecCCEEEeccccHHHHHHHHHHHHCCCHHHHhHHheeccCchhhHhcCChHhHHH
Confidence 9985 6789999998864 445566788764 4567777776 4677665542 468999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchHH
Q 001581 169 ETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDM 248 (1050)
Q Consensus 169 ~~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 248 (1050)
++.+++|...|...... .+..+.+....+..+...+..+...+..++..+..++.... .....
T Consensus 155 il~~l~~~~~~~~~~~~---~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~--------------~~i~~ 217 (562)
T PHA02562 155 LVEDLLDISVLSEMDKL---NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG--------------ENIAR 217 (562)
T ss_pred HHHHHhCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--------------HHHHH
Confidence 99999997755443221 34455566666666666666666555555555554443221 11333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchHhhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH--Hhhh-hHhHHHH
Q 001581 249 KKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLE--KVDQ-GVQVQGK 325 (1050)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~ 325 (1050)
+..++..+......+..++..++.++..+...+......+..++..+..++..+........-+.. .+.- ...+...
T Consensus 218 l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~ 297 (562)
T PHA02562 218 KQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEG 297 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCc
Confidence 344444444444444555555544444444444444444444444444444444444444333321 1111 1122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001581 326 YKEMQELRRQEQSRQQRILKAREELAAAELDLQTVPAYEPPHDKIEKLGSQILELGVQANQKRLQKSEKEKILNQNKLTL 405 (1050)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 405 (1050)
...+..+..++..++.++..+...+..++.... ++.++..++.++...+......+..+..+...++.++
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~----------~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei 367 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMD----------EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAI 367 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433221 2333344444444444444444444444444444444
Q ss_pred HHHHHHHHHhhhHHHH
Q 001581 406 RQCSDRLKDMEDKNNK 421 (1050)
Q Consensus 406 ~~~~~~l~~l~~~~~~ 421 (1050)
..+......+..++..
T Consensus 368 ~~l~~~~~~~~~~l~~ 383 (562)
T PHA02562 368 EELQAEFVDNAEELAK 383 (562)
T ss_pred HHHHhhhhchHHHHHH
Confidence 4444443333333333
No 27
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.95 E-value=3.7e-25 Score=251.37 Aligned_cols=184 Identities=18% Similarity=0.222 Sum_probs=148.2
Q ss_pred EEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCceeEEEEEEEeCCC
Q 001581 23 IIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGDTK 102 (1050)
Q Consensus 23 i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~~~ 102 (1050)
|.+|.|.||++|..++|+|+||+|+|+||||||||+|++||.|++||+. ..++|++|+..+.|+++|.+.+.
T Consensus 2 l~~l~i~nf~~~~~~~i~f~~g~~vitG~nGaGKS~ll~al~~~~g~~~--------~~~~i~~~~~~~~v~~~f~~~~~ 73 (563)
T TIGR00634 2 LTELRINNFALIRVLTVEFERGLTVLTGETGAGKSMIIDALSLLGGQRA--------GASRVRSGENRAVVEGRFTTESL 73 (563)
T ss_pred ceEEEEcceeeeeeeEEecCCCeEEEECCCCCCHHHHHHHHHHHhCcCc--------hHHHhcCCCCeEEEEEEEccCCC
Confidence 7899999999999999999999999999999999999999999999853 36889999999999999975321
Q ss_pred ------------------CceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHHhcCChH
Q 001581 103 ------------------EEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPV 164 (1050)
Q Consensus 103 ------------------~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~ 164 (1050)
++.++|+|.+..+|++.|+|||.+++.+.+.+++..+ +.-+|+......++|.
T Consensus 74 ~~~~~~~l~~~~~~~~~~~~~~ii~R~i~~~grs~~~iNg~~v~~~~l~~l~~~l---------i~i~gQ~~~~~l~~~~ 144 (563)
T TIGR00634 74 DDADYPALQAIELEEEDEDGEVILRRSISRDGRSRAYLNGKPVSASSLLEFTSEL---------LDLHGQHDQQLLFRPD 144 (563)
T ss_pred chHHHHHHHhcCCCcCCCCCeEEEEEEEcCCCceEEEECCEEccHHHHHHHhcCe---------EEEECchHHHHhcCHH
Confidence 3578999999999999999999999999999986421 3335666677778999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 165 KLLEETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQ 226 (1050)
Q Consensus 165 ~~~~~~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~ 226 (1050)
.++.+++..+|.. .....+.....++..+...+............+++.++.++++++.
T Consensus 145 ~~~~lLD~~~~~~---~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 145 EQRQLLDTFAGAN---EKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred HHHHHHHHhcCch---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999843 3344455556666677777776666666666666666666666653
No 28
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.94 E-value=9.2e-18 Score=176.24 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=95.1
Q ss_pred ceEEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhc-------CCCcc-cccccchhhhhh-------
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALG-------GDTQL-LGRATSIGAYVK------- 85 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~-------g~~~~-~~r~~~~~~~i~------- 85 (1050)
-++.+|.+.||++|....++..-+-.+++|..||||||++|||..+|- .+++. ..+..++..||.
T Consensus 15 FRL~~iqliNWGTF~T~~~~~T~~G~LvTG~~GSGKSTLIDAITavLlP~~kl~~N~AA~A~t~~RSL~tYi~G~~raq~ 94 (1104)
T COG4913 15 FRLSRIQLINWGTFHTVDIPVTREGILVTGGSGSGKSTLIDAITAVLLPQGKLRFNSAAQANTPRRSLVTYIRGAWRAQE 94 (1104)
T ss_pred eeeeEEEEeeccccceeeeeEeccceEEecCCCCCchhHHHHHHHHhcccchhhcccccccCCchhHHHHHHHHHHhhcc
Confidence 578999999999998666666533369999999999999999999992 11111 112235555664
Q ss_pred -------------cCCceeEEEEEEEeCCCCceEEEEEEEec--CCceeEEECCeecCHHHHHHHHHHcCccccc-----
Q 001581 86 -------------RGEESGYIKISLRGDTKEEHLTIMRKIDT--RNKSEWFFNGKVVPKGEVLEITKRFNIQVNN----- 145 (1050)
Q Consensus 86 -------------~g~~~a~v~i~~~~~~~~~~~~i~R~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~----- 145 (1050)
...+...|.++|.| +.|.++++.-.++. +..+.|+ |..+-..++.-+++.++.++|-
T Consensus 95 ~~~~~~~~~~~LR~~a~YSlv~~~~~N-G~~~~~TL~~iF~LK~S~~~~~~--~~~~~d~~i~~~~DF~~~G~D~r~iR~ 171 (1104)
T COG4913 95 DPLQDQIVSTYLRPRATYSLVGLTYSN-GEGVEHTLVAIFYLKSSDISSYY--GVFPVDQDINALLDFLKEGIDKRQIRA 171 (1104)
T ss_pred CccccceeeeeeccccceEEEEEEeec-CCCeeEEEEEEEEeeccCCCcee--eEEechhhHHHHHHHHHccCcHHHHHH
Confidence 11246788899998 77888888887776 2334444 2333344555555543333221
Q ss_pred ---------ccccccchhhHHHhcCChHHHHHHHHHhh
Q 001581 146 ---------LTQFLPQDRVCEFAKLSPVKLLEETEKAV 174 (1050)
Q Consensus 146 ---------~~~~l~q~~~~~~~~~~~~~~~~~~~~~~ 174 (1050)
+.+| .-|.++.-+..+.++-+.+|..+.
T Consensus 172 ~~k~A~~~~~~S~-~~~~FR~R~GI~~EeAL~L~H~a~ 208 (1104)
T COG4913 172 AFKEAIFSEQHSV-FSGRFRSRLGISSEEALLLLHRAQ 208 (1104)
T ss_pred HHHhcchhhhhhH-HHHHHHHhhCCChHHHHHHHHHHh
Confidence 1122 345666666667666666666554
No 29
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.90 E-value=4.4e-18 Score=190.16 Aligned_cols=579 Identities=13% Similarity=0.131 Sum_probs=374.8
Q ss_pred HHHHHHHHhhCCCC---hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001581 165 KLLEETEKAVGDPQ---LPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKL 241 (1050)
Q Consensus 165 ~~~~~~~~~~g~~~---l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~ 241 (1050)
+.-.-|........ |+-....|......|..+...+..+...+..+...+..+++++.+++.......+...+...+
T Consensus 185 D~aR~FL~~~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l 264 (1074)
T KOG0250|consen 185 DAARSFLANSNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENL 264 (1074)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443433 344456788999999999999999999999999999999999999999888889999999999
Q ss_pred chhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHhhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHhhh-hH
Q 001581 242 PWLKYDMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLEKVDQ-GV 320 (1050)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 320 (1050)
..+.-..+|..+.....++..+...+...+.....+++.++.....+..+...+.+.++.+..+.........++.. ..
T Consensus 265 ~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~ 344 (1074)
T KOG0250|consen 265 EQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARK 344 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999998888888888888888888888888887777777777777777 77
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 321 QVQGKYKEMQELRRQEQSRQQRILKAREELAAAELDLQTVPAYEPPHDKI-EKLGSQILELGVQANQKRLQKSEKEKILN 399 (1050)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 399 (1050)
.+..+..+...++.++......+...+..+..+++.+..+ ..+. ..+..++.+.+.++..+..+++.++..+.
T Consensus 345 ~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~------~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~ 418 (1074)
T KOG0250|consen 345 DLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADL------EKQTNNELGSELEERENKLEQLKKEVEKLEEQIN 418 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777778888888888888877777654 3444 66777788888888888888888888888
Q ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHh---ccCcccHHHHHHHHHHhhcccCCcccccce-eEEeeCCcchHHHHHhhh
Q 001581 400 QNKLTLRQCSDRLKDMEDKNNKLLHALR---NSGAENIFEAYCWLQQHRHELNKEAYGPVL-LEVNVSNRAHANYLEDHV 475 (1050)
Q Consensus 400 ~~~~~~~~~~~~l~~l~~~~~~~~~~l~---~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~-~~i~~~~~~~~~~ie~~l 475 (1050)
.+..+++.+...+...+.+.......+. ... ......++.+....... -..+||-. .++...+..+...-..+.
T Consensus 419 ~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i-~~~~~~l~~lk~~k~dk-vs~FG~~m~~lL~~I~r~~~~f~~~P~ 496 (1074)
T KOG0250|consen 419 SLREELNEVKEKAKEEEEEKEHIEGEILQLRKKI-ENISEELKDLKKTKTDK-VSAFGPNMPQLLRAIERRKRRFQTPPK 496 (1074)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccch-hhhcchhhHHHHHHHHHHHhcCCCCCC
Confidence 8888888888888777666654433321 111 23334455555544332 24455422 333333333333334567
Q ss_pred cccccceEEeechhhHHHHHhhcCCCCcceEeecCCCCCCCCCCCChHHHHhcCccc--cccccccC---------cHHH
Q 001581 476 GHYIWKSFITQDAGDRDFLAKNLKPFDVPILNYVSNESSRKEPFQISEEMRALGISA--RLDQVFDA---------PHAV 544 (1050)
Q Consensus 476 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~---------~~~~ 544 (1050)
||.+ .++.+.+..|+..+..++....-+|++.++.|.. .....++..++.+ +..-+..+ +|.+
T Consensus 497 GPlG-~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~-----~Lr~i~~~~~~~~~~ptIvvs~~~~~~y~~~~~p~~ 570 (1074)
T KOG0250|consen 497 GPLG-KYVTLKEPKWALAIERCLGNLLNAFIVTSHKDAR-----ILRAIMRRLKIPGNRPTIVVSSFTPFDYSVGRNPGY 570 (1074)
T ss_pred CCcc-ceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHH-----HHHHHHHHcCCCCCCCcEEEecCCccccccccCCCC
Confidence 7754 5688999999999999998777788887765421 1111222222221 00001111 1111
Q ss_pred -HHHHHhhcCCcccccCCCcchhhhhHhhhcCcceEEcCCceEEE-----Ee---eccCCccceeeecccCCcc----cc
Q 001581 545 -KEVLISQFGLDSSYIGSKETDQKADNVAKLGILDFWTPENHYRW-----SI---SRYGGHVSASVEPVNQSRL----LL 611 (1050)
Q Consensus 545 -~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~---~~~~~~~t~~~~~~~~~~~----~~ 611 (1050)
.+.+..+ +-++++.+...++...++.+++.......+ +. ......+|++++....+|. ++
T Consensus 571 ~~pTil~~-------le~ddp~V~N~LID~s~iE~~lLiEdk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~~~~~yS 643 (1074)
T KOG0250|consen 571 EFPTILDA-------LEFDDPEVLNVLIDKSGIEQVLLIEDKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGPNYRVYS 643 (1074)
T ss_pred CCCceeee-------eecCChHHHHHhhhhccceeEEEecchHHHHHHHhcCCCCccceeeeccCccccccCCCCcceec
Confidence 1112121 334556666677777777655543321111 10 0001133444443322221 11
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 612 CSVDGNEIERLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLES 691 (1050)
Q Consensus 612 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~l~~ 691 (1050)
+...... .-...-......+..++..+..++.++..+......++..+.+++..+..+...+..++..+.....++.+
T Consensus 644 t~~~~~r--~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~e 721 (1074)
T KOG0250|consen 644 TRGTRAR--RPGVDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTE 721 (1074)
T ss_pred cCCCCCC--CccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 11122346778899999999999999999999999999999999999999999999999999999988888
Q ss_pred Hhhc-ccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 692 IEKE-DDIN---TALAKLVDQAADLNIQQFKYAIEIKNLLVEIVSCKWSYAEKHMASIEFDAKIRELEFNLKQHEKLAL 766 (1050)
Q Consensus 692 l~~~-~~~~---~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 766 (1050)
++.. .... ..++++..++.+...+++.....+..+...+..+..+..++..........+......+..+..++.
T Consensus 722 l~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~ 800 (1074)
T KOG0250|consen 722 LKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELK 800 (1074)
T ss_pred HhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8763 2111 2344444455555555555544455554444444444444444444433333333333333333333
No 30
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.89 E-value=1.4e-22 Score=207.06 Aligned_cols=142 Identities=23% Similarity=0.342 Sum_probs=122.5
Q ss_pred ceEEEEEEecccccceEEE--ecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcC----CceeEEE
Q 001581 21 GNIIEIELHNFMTFDHLIC--KPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRG----EESGYIK 94 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~~~~i--~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g----~~~a~v~ 94 (1050)
|+|++|.|.|||||+..++ +|+|++|+|+||||||||||++||+|+||+......|.....++|+.+ ...+.|.
T Consensus 1 m~i~~~~~~~f~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~ 80 (251)
T cd03273 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVT 80 (251)
T ss_pred CEeeEEEEeCccccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEE
Confidence 7999999999999997775 899999999999999999999999999997655555766777888754 3478999
Q ss_pred EEEEeCCC---------CceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHHhcCC
Q 001581 95 ISLRGDTK---------EEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLS 162 (1050)
Q Consensus 95 i~~~~~~~---------~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~ 162 (1050)
+.|.+.+. ++.++|.|.+..++...|++|++.....++.+++..+|+.+++++++++||+|.+++++.
T Consensus 81 ~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~ 157 (251)
T cd03273 81 IVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMG 157 (251)
T ss_pred EEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhH
Confidence 99998532 358999999988666778889888888999999999999999998999999999998774
No 31
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.88 E-value=3.7e-17 Score=202.26 Aligned_cols=179 Identities=18% Similarity=0.300 Sum_probs=153.2
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchHHHHHHHHHHHH
Q 001581 179 LPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKKAEYIAAKE 258 (1050)
Q Consensus 179 l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 258 (1050)
|.+....+.+++.++.++..+++.+..+++++...+.+++.+++.|+...+...++..+...+..+.....+.++.....
T Consensus 160 iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~ 239 (1163)
T COG1196 160 LIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRK 239 (1163)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccchHhhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHhhh-hHhHHHHHHHHHHHHHHHH
Q 001581 259 QEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLEKVDQ-GVQVQGKYKEMQELRRQEQ 337 (1050)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 337 (1050)
++..+...+..++..+..+...+......+..+...+.++...+.........+...+.. ..++..+..++..+.....
T Consensus 240 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~ 319 (1163)
T COG1196 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELE 319 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998887777777777777 7777777776666666655
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001581 338 SRQQRILKAREELAAAELDL 357 (1050)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~l 357 (1050)
.....+..++..+...+..+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~ 339 (1163)
T COG1196 320 ELEERLEELKEKIEALKEEL 339 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555554444444444433
No 32
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=6.7e-17 Score=180.14 Aligned_cols=192 Identities=15% Similarity=0.173 Sum_probs=128.9
Q ss_pred cCccccccccccCcHHHHHHHHhhcCCcccccCCCcchhhhhHhh-----hcCcceEEcCCceE----------------
Q 001581 528 LGISARLDQVFDAPHAVKEVLISQFGLDSSYIGSKETDQKADNVA-----KLGILDFWTPENHY---------------- 586 (1050)
Q Consensus 528 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~v~~~~~~---------------- 586 (1050)
+||.|.+.||-..|+.|..+++.+|+ ...+||++..+.+..++. +.|+.+|+.++...
T Consensus 616 ~Gf~GRLGDLg~Id~kYDvAIsTac~-~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~i~tpenvP 694 (1293)
T KOG0996|consen 616 PGFYGRLGDLGAIDEKYDVAISTACA-RLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAPITTPENVP 694 (1293)
T ss_pred CccccccccccccchHHHHHHHHhcc-ccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCCCCCCCCcc
Confidence 68999999999999999999999665 566688877666655554 34556887766543
Q ss_pred -------------------------------EEEeeccC-----CccceeeecccCCccccccCChH-------HH---H
Q 001581 587 -------------------------------RWSISRYG-----GHVSASVEPVNQSRLLLCSVDGN-------EI---E 620 (1050)
Q Consensus 587 -------------------------------~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~~~-------~~---~ 620 (1050)
.+.+..|| +.||+.|..+.++|.++||...- .+ .
T Consensus 695 RLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~rr~RVvTL~G~lIe~SGtmtGGG~~v~~g~mg~~~~~t~ 774 (1293)
T KOG0996|consen 695 RLFDLVKCKDEKFRPAFYFALRDTLVADNLEQATRIAYGKDRRWRVVTLDGSLIEKSGTMTGGGKKVKGGRMGTSIRVTG 774 (1293)
T ss_pred hHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHHHHhhcCCCceEEEEecceeecccccccCCCCcCCCCCCCCccccCC
Confidence 01123333 25799999999999999874321 01 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----c
Q 001581 621 RLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESIEKE----D 696 (1050)
Q Consensus 621 ~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~l~~l~~~----~ 696 (1050)
.-......++..+.........+..+...+......+......+...+..+......+...+..++..+..++.. .
T Consensus 775 ~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~ 854 (1293)
T KOG0996|consen 775 VSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKV 854 (1293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 113456677777777777777777777777777777877777777777777777777777777777777666654 1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 697 DINTALAKLVDQAADLNIQQFKYA 720 (1050)
Q Consensus 697 ~~~~~~~~l~~~~~~l~~~~~~~~ 720 (1050)
.....+..++..++.+..++..++
T Consensus 855 ~d~~~l~~~~~~ie~l~kE~e~~q 878 (1293)
T KOG0996|consen 855 VDKKRLKELEEQIEELKKEVEELQ 878 (1293)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344455555555555555554
No 33
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.88 E-value=4.4e-17 Score=210.33 Aligned_cols=183 Identities=19% Similarity=0.299 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001581 816 ELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRN 895 (1050)
Q Consensus 816 ~l~~~i~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~f~~~ 895 (1050)
.+...+..+...++.+..++..+.++|..+..++.++...+..|...+..+...+..++......|..++..++..|..+
T Consensus 969 ~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~l 1048 (1179)
T TIGR02168 969 EARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRV 1048 (1179)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444455555555555555555555555555555555444444445555555555556666
Q ss_pred HhcCCcceEEEee-cCCCcccccceEEEEEecCCCCcccccccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCC
Q 001581 896 FQEMAVAGEVSLD-EHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMD 974 (1050)
Q Consensus 896 f~~l~~~g~~~l~-~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD 974 (1050)
|..+++||.+.|. .++++|.+.|+.|.|.|+ +.. ...+..||||++.+++|+++||++.+.|+||+||||+|++||
T Consensus 1049 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld 1125 (1179)
T TIGR02168 1049 FPKLFGGGEAELRLTDPEDLLEAGIEIFAQPP-GKK--NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLD 1125 (1179)
T ss_pred HHHHhCCCeEEEEeCCCCcccccCceEEEeCC-CCc--cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCcccccc
Confidence 6666778887776 456678889999999986 332 235567999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 975 PINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 975 ~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+.++..++.+|...+. ..|||||||+.
T Consensus 1126 ~~~~~~~~~~~~~~~~---~~~~i~~sh~~ 1152 (1179)
T TIGR02168 1126 DANVERFANLLKEFSK---NTQFIVITHNK 1152 (1179)
T ss_pred HHHHHHHHHHHHHhcc---CCEEEEEEcCh
Confidence 9999999998888764 58999999994
No 34
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=2.1e-21 Score=197.23 Aligned_cols=138 Identities=33% Similarity=0.455 Sum_probs=117.9
Q ss_pred EEEEEEecccccc-eEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCc------eeEEEE
Q 001581 23 IIEIELHNFMTFD-HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEE------SGYIKI 95 (1050)
Q Consensus 23 i~~l~l~nF~~~~-~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~------~a~v~i 95 (1050)
|++|+|.||+||. .++|+|.+++|+|+||||||||||++||+|+|++.+.. .|+....++|+.|.. .+.|.+
T Consensus 1 i~~i~l~nf~~~~~~~~~~~~~~~~~i~G~NGsGKStll~ai~~~l~~~~~~-~r~~~~~~~i~~~~~~~~~~~~~~v~~ 79 (247)
T cd03275 1 LKRLELENFKSYKGRHVIGPFDRFTCIIGPNGSGKSNLMDAISFVLGEKSSH-LRSKNLKDLIYRARVGKPDSNSAYVTA 79 (247)
T ss_pred CcEEEEECccccCCCeeecCCCCeEEEECCCCCCHHHHHHHHHHHhCCCccc-ccccchhhhcccCccccCCCceEEEEE
Confidence 6799999999998 56799999999999999999999999999999976433 366678899988865 799999
Q ss_pred EEEeCCCCceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHHhcCCh
Q 001581 96 SLRGDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSP 163 (1050)
Q Consensus 96 ~~~~~~~~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~ 163 (1050)
.|.+. ++..+.+.|.+ +.+.+.|++||+.++..++.+++..+|++++....+++||++..++.++|
T Consensus 80 ~f~~~-~~~~~~~~~~~-~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p 145 (247)
T cd03275 80 VYEDD-DGEEKTFRRII-TGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNP 145 (247)
T ss_pred EEEcC-CCcEEEEEEEE-ECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccC
Confidence 99863 34556666666 55778899999999999999999999999886666789999999999987
No 35
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.86 E-value=1.5e-16 Score=204.50 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001581 193 LKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKKAEYIAAKEQEKDAKKKLDEAAN 272 (1050)
Q Consensus 193 ~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (1050)
.......+..+...+.++...+.++...+..++...+...++..+..++..+.......++......+..+..++..+..
T Consensus 165 ~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1164)
T TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIER 244 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888999999999999999999999988888888888877777776666666677777788888888888888
Q ss_pred hcccccchHhhHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 001581 273 TLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMD 311 (1050)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (1050)
.+..+...+..+...+..+...+..+...+..+...+..
T Consensus 245 ~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 283 (1164)
T TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD 283 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888887776665
No 36
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.4e-20 Score=191.87 Aligned_cols=139 Identities=21% Similarity=0.295 Sum_probs=115.7
Q ss_pred EEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCceeEEEEEEEeCCC
Q 001581 23 IIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGDTK 102 (1050)
Q Consensus 23 i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~~~ 102 (1050)
|.+|.|.||++|.+.+++|+||+|+|+||||||||||++||.|++||.+. |.....++|+.|...+.|+++|.+ .
T Consensus 1 l~~l~i~nfr~~~~~~~~~~~~~~~i~G~NGsGKS~ll~Ai~~~~~~~~~---r~~~~~~~i~~~~~~~~v~~~f~~--~ 75 (270)
T cd03242 1 LKSLELRNFRNYAELELEFEPGVTVLVGENAQGKTNLLEAISLLATGKSH---RTSRDKELIRWGAEEAKISAVLER--Q 75 (270)
T ss_pred CcEEEEeCCcCcceeEEecCCCeEEEECCCCCCHHHHHHHHHHhccCCCC---CCCCHHHHHhcCCCCEEEEEEEEe--C
Confidence 57899999999999999999999999999999999999999999998754 656778999999999999999986 3
Q ss_pred CceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHHhcCChHHHHHHHHHhhC
Q 001581 103 EEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175 (1050)
Q Consensus 103 ~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~~~g 175 (1050)
+..+.|.|.+.++|++.|++||..++. +.++...+ ..+..|+....++..+|..++.+++...+
T Consensus 76 ~~~~~i~~~~~~~~~~~~~ing~~~~~--l~~l~~~l-------~~i~~~~~~~~l~~~~p~~rr~~lD~~~~ 139 (270)
T cd03242 76 GGELALELTIRSGGGRKARLNGIKVRR--LSDLLGVL-------NAVWFAPEDLELVKGSPADRRRFLDRLLG 139 (270)
T ss_pred CCeEEEEEEEEcCCceEEEECCeeccC--HHHHhCcC-------cEEEEecchhhhhcCCHHHHHHHHHHHHH
Confidence 456899999877788999999998875 44443322 12333445456778899999999999886
No 37
>PRK00064 recF recombination protein F; Reviewed
Probab=99.84 E-value=9.1e-20 Score=194.57 Aligned_cols=140 Identities=21% Similarity=0.302 Sum_probs=119.2
Q ss_pred ceEEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCceeEEEEEEEeC
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1050)
|+|.+|.|.||++|.+.+++|+||+|+|+||||||||||++||.++++|.+. |+....++|+.|...+.|+++|.+
T Consensus 1 M~i~~l~i~nfr~~~~~~l~~~~~~~~i~G~NgsGKT~lleai~~l~~~~s~---r~~~~~~li~~g~~~~~v~~~~~~- 76 (361)
T PRK00064 1 MYLTRLSLTDFRNYEELDLELSPGVNVLVGENGQGKTNLLEAIYLLAPGRSH---RTARDKELIRFGAEAAVIHGRVEK- 76 (361)
T ss_pred CEEEEEEEeCCCcccceEEEecCCeEEEECCCCCCHHHHHHHHHHhCCCCCc---cCCChhHHHhcCCCcEEEEEEEEe-
Confidence 7899999999999999999999999999999999999999999999988765 667889999999999999999975
Q ss_pred CCCceEEEEEEEecCCceeEEECCeec-CHHHHHHHHHHcCcccccccccccchhhHHHhcCChHHHHHHHHHhhC
Q 001581 101 TKEEHLTIMRKIDTRNKSEWFFNGKVV-PKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175 (1050)
Q Consensus 101 ~~~~~~~i~R~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~~~g 175 (1050)
++..+.|.|.+.++|++.|++||+++ +..++..++... .|-||+ ..++..+|..++.+++..++
T Consensus 77 -~~~~~~i~~~~~~~~~~~~~ing~~~~~~~~l~~~~~~v--------~~~p~~--~~l~~~~p~~RR~fLD~~~~ 141 (361)
T PRK00064 77 -GGRELPLGLEIDKKGGRKVRINGEPQRKLAELAGLLNVV--------LFTPED--LRLVKGGPSERRRFLDRLLF 141 (361)
T ss_pred -CCcEEEEEEEEEcCCceEEEECCccccCHHHHhhhccEE--------EEccch--hhhhcCCHHHHHHHHHHHHh
Confidence 45668899998876778899999988 677776665432 233343 25777899999999998886
No 38
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2.8e-20 Score=192.09 Aligned_cols=133 Identities=23% Similarity=0.387 Sum_probs=110.3
Q ss_pred EEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCceeEEEEEEEeCCC
Q 001581 23 IIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGDTK 102 (1050)
Q Consensus 23 i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~~~ 102 (1050)
|.+|+|.||++|....|+|+||+|+|+||||||||||++||+|++||.+ ..++++.|...+.|+++|.+.+.
T Consensus 1 l~~l~i~nf~~~~~~~i~~~~~~~~i~G~nGsGKS~il~ai~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~ 72 (276)
T cd03241 1 LLELSIKNFALIEELELDFEEGLTVLTGETGAGKSILLDALSLLLGGRA--------SADLIRSGAEKAVVEGVFDISDE 72 (276)
T ss_pred CcEEEEeCccceeeeEEEeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCC--------hHHHhhCCCCeEEEEEEEecCCc
Confidence 5789999999999999999999999999999999999999999999863 36888999999999999986331
Q ss_pred --------------CceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHHhcCChHHHHH
Q 001581 103 --------------EEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLE 168 (1050)
Q Consensus 103 --------------~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~~~~ 168 (1050)
+..++|+|++..+|++.|+|||++++.+++.+++..+ +..++....+..++|..++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~i~R~i~~~~~s~~~Ing~~vsl~~l~~i~~~l---------i~i~gq~~~~~l~~~~~~~~ 143 (276)
T cd03241 73 EEAKALLLELGIEDDDDLIIRREISRKGRSRYFINGQSVTLKLLRELGSLL---------VDIHGQHDHQNLLNPERQLD 143 (276)
T ss_pred hHHHHHHHHcCCCCCCeEEEEEEEecCCceEEEECCEEECHHHHHHHHHhh---------eEEECcHHHHHhcChHHhHh
Confidence 3579999999988999999999999999998886321 22244444555567777777
Q ss_pred HHHH
Q 001581 169 ETEK 172 (1050)
Q Consensus 169 ~~~~ 172 (1050)
++++
T Consensus 144 lLD~ 147 (276)
T cd03241 144 LLDG 147 (276)
T ss_pred hhhC
Confidence 7766
No 39
>PRK14079 recF recombination protein F; Provisional
Probab=99.83 E-value=2.5e-19 Score=189.90 Aligned_cols=138 Identities=15% Similarity=0.211 Sum_probs=112.6
Q ss_pred ceEEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCceeEEEEEEEeC
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1050)
|+|.+|.|.||++|.+.+++|+||+|+|+||||||||||++||.|++||.. |+....++|+.|...+.|.++|..
T Consensus 1 M~i~~l~l~nfRn~~~~~l~f~~g~nvi~G~NGsGKT~lLeAI~~~~~gs~----r~~~~~~lI~~g~~~~~v~~~~~~- 75 (349)
T PRK14079 1 MRLLSLRQLNYRNLAPPTLAFPPGVTAVVGENAAGKTNLLEAIYLALTGEL----PNGRLADLVRFGEGEAWVHAEVET- 75 (349)
T ss_pred CEEEEEEEeccCCcccceEEeCCCeEEEECCCCCCHHHHHHHHHHHhcCCC----CCCcHHhheecCCCcEEEEEEEEe-
Confidence 899999999999999999999999999999999999999999999999833 666789999999999999999975
Q ss_pred CCCceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHHhcCChHHHHHHHHHhhC
Q 001581 101 TKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175 (1050)
Q Consensus 101 ~~~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~~~g 175 (1050)
.+..+.+...+.. +++.|++||++++..++..++. +.++.|+...-+. .+|..++.+++..++
T Consensus 76 -~~~~~~~~~~~~~-~~~~~~ing~~~~~~~l~~~~~---------~v~~~p~d~~li~-~~p~~RR~fLD~~l~ 138 (349)
T PRK14079 76 -GGGLSRLEVGLGP-GRRELKLDGVRVSLRELARLPG---------AVLIRPEDLELVL-GPPEGRRAYLDRLLS 138 (349)
T ss_pred -CCCeEEEEEEEEc-CceEEEECCeecCHHHHHhhhc---------EEEEecCchHhhh-CCHHHHHHHHHHHHH
Confidence 3344455555544 5578999999998877766541 2345677664444 589999999988775
No 40
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=3.8e-14 Score=154.85 Aligned_cols=502 Identities=14% Similarity=0.165 Sum_probs=260.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchHHHHHHHHHHHHHHHHH
Q 001581 184 CALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKKAEYIAAKEQEKDA 263 (1050)
Q Consensus 184 ~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (1050)
....-|.++..+....++++...-..+...+..++..+..++...+-.+.|..+......++|..+..++.+...++..+
T Consensus 163 aGtrvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~l 242 (1200)
T KOG0964|consen 163 AGTRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERL 242 (1200)
T ss_pred cccchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHH
Confidence 33444778888999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhhcccccchHhhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH-------hhh-hHhHHHHHHHHHH----
Q 001581 264 KKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLEK-------VDQ-GVQVQGKYKEMQE---- 331 (1050)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~l~~---- 331 (1050)
.......-.+-.....++......+..+..++.++...+..+....+++... ... .-++..+..++..
T Consensus 243 e~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~ 322 (1200)
T KOG0964|consen 243 EEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQ 322 (1200)
T ss_pred HHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhh
Confidence 8766554444333333333333333444433333333333333222222111 111 1122222222222
Q ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-------CCCChhhHHHHHHHHHHH
Q 001581 332 ------------------------LRRQEQSRQQRILKAREELAAAELDLQTVPA-------YEPPHDKIEKLGSQILEL 380 (1050)
Q Consensus 332 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~l~~~ 380 (1050)
+.-....+...-......+..++.....+-. +....+.-.=+..++..+
T Consensus 323 r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l 402 (1200)
T KOG0964|consen 323 RNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKL 402 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHH
Confidence 2222222222222222223323222211110 111111111223344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHhccC--cccHHHHHHHHHHhhcccCCccccccee
Q 001581 381 GVQANQKRLQKSEKEKILNQNKLTLRQCSDRLKDMEDKNNKLLHALRNSG--AENIFEAYCWLQQHRHELNKEAYGPVLL 458 (1050)
Q Consensus 381 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~--~~~~~~~~~~l~~~~~~~~~~~~g~~~~ 458 (1050)
..-+.........++.++..+..++...-.++..+...+.....++.... ...+.+-...+...+.
T Consensus 403 ~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk------------ 470 (1200)
T KOG0964|consen 403 KRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRK------------ 470 (1200)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 44444444444444444444444444444444444433332222221110 0111111111111111
Q ss_pred EEeeCCcchH--HHHHhhhcccccceEEeechhhHHHHHhhcCCCCcceEeecCCCCCCCCCCCChHHHHhcCccccccc
Q 001581 459 EVNVSNRAHA--NYLEDHVGHYIWKSFITQDAGDRDFLAKNLKPFDVPILNYVSNESSRKEPFQISEEMRALGISARLDQ 536 (1050)
Q Consensus 459 ~i~~~~~~~~--~~ie~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1050)
..|. .++...++.. ..+.......+... .+..+..+.+. ...+...+++.|+.|++.+
T Consensus 471 ------~lWREE~~l~~~i~~~---------~~dl~~~~~~L~~~-~~r~v~nGi~~----v~~I~e~~k~ngv~G~v~e 530 (1200)
T KOG0964|consen 471 ------ELWREEKKLRSLIANL---------EEDLSRAEKNLRAT-MNRSVANGIDS----VRKIKEELKPNGVFGTVYE 530 (1200)
T ss_pred ------HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHh-ccchhhhhhHH----HHHHHHHhcccccceehhh
Confidence 1121 1122222210 11111111111100 00000000000 0011122345789999999
Q ss_pred cccCcHHHHHHHHhhcCCcccccCCCcchhhhhHhh-----hcCcceEEcCCceEEEEeecc------------------
Q 001581 537 VFDAPHAVKEVLISQFGLDSSYIGSKETDQKADNVA-----KLGILDFWTPENHYRWSISRY------------------ 593 (1050)
Q Consensus 537 l~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~------------------ 593 (1050)
++.+|+.|.+++....|-..+++|++.++.+-..+. +.|..+|++.+... ++...|
T Consensus 531 L~~v~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~-~r~v~yp~~sdaiPli~kl~y~p~ 609 (1200)
T KOG0964|consen 531 LIKVPNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLK-ARDVEYPKDSDAIPLISKLRYEPQ 609 (1200)
T ss_pred hhcCCHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCc-hhhccCCCCCCccchHHHhCcchh
Confidence 999999999999999999999999999888766655 23455788766543 111111
Q ss_pred ----------------------------C-CccceeeecccCCccccccCChHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 001581 594 ----------------------------G-GHVSASVEPVNQSRLLLCSVDGNEIE--RLRSKKKKLEESVDELEESLKS 642 (1050)
Q Consensus 594 ----------------------------~-~~~t~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~l~~~~~~l~~~l~~ 642 (1050)
+ ..+|.+|+.+...|.++||....... .+...+.....++..++..++.
T Consensus 610 fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~~~~~~~~~~~l~~~L~~ 689 (1200)
T KOG0964|consen 610 FDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQKRSRLELLKNVNESRSELKELQESLDE 689 (1200)
T ss_pred hHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccceecccCCccccchhhhhhHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 0 13788899998889999986433322 3344555566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccHHHHHHHHHHHHHHHHHHHHH
Q 001581 643 MQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESIEKE-DDINTALAKLVDQAADLNIQQFK 718 (1050)
Q Consensus 643 l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~l~~l~~~-~~~~~~~~~l~~~~~~l~~~~~~ 718 (1050)
+..+++....++..+...++.+..++.....++..+..++..+..+...++.. ......+..+...+..+......
T Consensus 690 ~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~ 766 (1200)
T KOG0964|consen 690 VRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNY 766 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666665555433 22223344444444444444333
No 41
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=4.4e-20 Score=180.91 Aligned_cols=111 Identities=60% Similarity=1.031 Sum_probs=101.3
Q ss_pred ceEEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCceeEEEEEEEeC
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1050)
|.|.+|+|.||++|.+..++|+||+|+|+||||||||||++||+++|||.+....|+..+.++|+.|...+.|+++|.+.
T Consensus 1 ~~i~~i~i~nfr~~~~~~i~~~~g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~ 80 (213)
T cd03277 1 GSIVRIKLENFVTYDETEFRPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGN 80 (213)
T ss_pred CeeEEEEEeCCCCcceeEEecCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeC
Confidence 57999999999999999999999999999999999999999999999999877778888899999999999999999863
Q ss_pred CCCceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHHhcCChHHHHH
Q 001581 101 TKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLE 168 (1050)
Q Consensus 101 ~~~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~~~~ 168 (1050)
+. . +.++|+|++++||++.+|+.++|.+++.
T Consensus 81 ~~--~-----------------------------------~~~~n~~~~~~q~~~~~~~~~~~~e~l~ 111 (213)
T cd03277 81 PG--N-----------------------------------IQVDNLCQFLPQDRVGEFAKLSPIELLV 111 (213)
T ss_pred CC--c-----------------------------------cccCCceEEEchHHHHHHHhCChHhHhe
Confidence 21 0 8889999999999999999999998874
No 42
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.81 E-value=2e-12 Score=160.47 Aligned_cols=59 Identities=20% Similarity=0.361 Sum_probs=40.6
Q ss_pred cCchhHHHHHHHHHHHhccc--CCCCc---eEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCC
Q 001581 939 QSGGERSVSTILYLVSLQDL--TNCPF---RVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPK 1003 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~--~~~Pf---~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~ 1003 (1050)
-|-|.=-++.+.|.+||..+ ..+|| |.+|||= -||+.|+..+++++-. ++-.+|.=+|.
T Consensus 1121 sS~G~syLi~~~~~i~l~~~lr~~~~~~ihwpiDEiG-~L~~~Nv~~l~~~~~~-----nnI~li~A~P~ 1184 (1201)
T PF12128_consen 1121 SSHGTSYLILCMFFIALTRMLRGDADFRIHWPIDEIG-KLHPNNVKKLLDMCNS-----NNISLISAFPN 1184 (1201)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCCCeEEEeeehhhc-cCChHHHHHHHHHHHh-----CCceEEEeCCC
Confidence 57777777777777776543 45687 7799985 6999999998887642 24455555554
No 43
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.81 E-value=7.6e-17 Score=183.70 Aligned_cols=190 Identities=16% Similarity=0.222 Sum_probs=154.8
Q ss_pred cCCHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001581 811 PTTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLS---TKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQ 887 (1050)
Q Consensus 811 ~~~~~~l~~~i~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~---~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 887 (1050)
|..+++++.++..+.....+++.....+...++.+..++..+. ..+..+...+..+...+..+...+..........
T Consensus 300 p~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~ 379 (563)
T TIGR00634 300 PERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAER 379 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557778888888888888888777788888888888777655 4688888888888888888888888888889999
Q ss_pred HHHHHHHHHhcCCc-ceEEEee-cCCCcc------cccc---eEEEEEecCCCCcccccccccCchhHHHHHHHHHHHhc
Q 001581 888 INETFSRNFQEMAV-AGEVSLD-EHESDF------DKFG---ILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQ 956 (1050)
Q Consensus 888 i~~~f~~~f~~l~~-~g~~~l~-~~~~~~------~~~~---l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lall~al~ 956 (1050)
+...+...+..|+. ++.+.+. .....+ ...| ++|++++++|.+++|+ ...+||||+++++||+.+++.
T Consensus 380 l~~~v~~~l~~L~m~~~~f~v~~~~~~~~~~~~~~~~~G~d~v~f~~~~n~g~~~~pl-~~~lSgGe~~rv~la~~l~~~ 458 (563)
T TIGR00634 380 LAKRVEQELKALAMEKAEFTVEIKTSLPSGAKARAGAYGADQVEFLFSANTGEPVKPL-AKVASGGELSRVMLALKVVLS 458 (563)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEEeecCccccccCCCCCCceEEEEEEecCCCCCCCCh-hhhcCHhHHHHHHHHHHHhhC
Confidence 99999999999974 5555544 111111 2344 8899999889877776 235999999999999999987
Q ss_pred ccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 957 DLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 957 ~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
...+.|++||||+|+|||+.....+++.|.+++. +.|+|+|||..
T Consensus 459 ~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~---~~~vi~iTH~~ 503 (563)
T TIGR00634 459 SSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE---RHQVLCVTHLP 503 (563)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc---CCEEEEEEChH
Confidence 6677899999999999999999999999988864 79999999993
No 44
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.77 E-value=2.7e-18 Score=175.78 Aligned_cols=137 Identities=24% Similarity=0.439 Sum_probs=114.4
Q ss_pred EEEEEEecccccceEEE--ecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCc----eeEEEEE
Q 001581 23 IIEIELHNFMTFDHLIC--KPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEE----SGYIKIS 96 (1050)
Q Consensus 23 i~~l~l~nF~~~~~~~i--~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~----~a~v~i~ 96 (1050)
|++|+|.|||+|.+..+ +|++++|+|+||||||||||++||+++|+...+. .|.....++|+.|.. .++|++.
T Consensus 1 i~~i~~~nfksy~~~~~~~~~~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~-~~~~~~~~li~~~~~~~~~~~~v~i~ 79 (243)
T cd03272 1 IKQVIIQGFKSYKDQTVIEPFSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTH-LREEQRQALLHEGSGPSVMSAYVEII 79 (243)
T ss_pred CcEEEEeCccCcccCcccccCCCCcEEEECCCCCCHHHHHHHHHHHHcCchhh-hhhhhHHHhEeCCCCCCCceEEEEEE
Confidence 67999999999996665 7899999999999999999999999999977665 566667799987754 5899999
Q ss_pred EEeCCC-----CceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHHhcC
Q 001581 97 LRGDTK-----EEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKL 161 (1050)
Q Consensus 97 ~~~~~~-----~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~ 161 (1050)
|.+.+. ..++.|.|++.. ....|.+++...+..++..++..+|+...+++++++||++..++.+
T Consensus 80 ~~~~~~~~~~~~~~~~i~r~ig~-~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l 148 (243)
T cd03272 80 FDNSDNRFPIDKEEVRLRRTIGL-KKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNM 148 (243)
T ss_pred EEcCCCccCCCCCEEEEEEEEEC-CCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhc
Confidence 986432 257899999976 5678999998889999999999999987777677889998877655
No 45
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=7e-11 Score=130.59 Aligned_cols=174 Identities=14% Similarity=0.221 Sum_probs=115.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcchhchHHHHHHHHHHHHHHHHHH
Q 001581 186 LVEKSSKLKTIECTVKRNGDTLNQLKALNV-EQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKKAEYIAAKEQEKDAK 264 (1050)
Q Consensus 186 l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (1050)
-..|..+...+...++.-+.++.++...+. ++...+.+|++.+...-++......+..+..--...+|-..........
T Consensus 171 Trmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~ 250 (1174)
T KOG0933|consen 171 TRMYENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRICIAYEYLQAEEKRKNSA 250 (1174)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888888888888887774 4677777777666666677766666666666556667777888888888
Q ss_pred HHHHHHHhhcccccchHhhHHHHHHhHHhhHHHHHHHHH--------HHHHHHHHHHHHhhh-hHhHHHHHHHHHHHHHH
Q 001581 265 KKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLIN--------ENSKRRMDFLEKVDQ-GVQVQGKYKEMQELRRQ 335 (1050)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 335 (1050)
..+.+....+..+.+.......++..++.++.++..... .+...+..+...+.. ...+......+......
T Consensus 251 ~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k 330 (1174)
T KOG0933|consen 251 HEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEK 330 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 888888888888888888888888888888887766432 233333333333333 44444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 001581 336 EQSRQQRILKAREELAAAELDLQT 359 (1050)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~l~~ 359 (1050)
.+.+...+......+..-+..+..
T Consensus 331 ~e~i~~~i~e~~~~l~~k~~~~~~ 354 (1174)
T KOG0933|consen 331 LEEIRKNIEEDRKKLKEKEKAMAK 354 (1174)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhh
Confidence 555555555555555544444443
No 46
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=8.6e-17 Score=170.89 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=103.7
Q ss_pred ceEEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCceeEEEEEEEeC
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1050)
|+|.+|+|.||++|.+.+++|+||+|+|+||||||||||++||+++++|.+. |+....++|+.|+..+.|+++|.+.
T Consensus 1 M~l~~L~i~nFR~~~~~~l~~~~~~nvi~G~NGsGKT~lLeAi~~l~~~~s~---R~~~~~~li~~g~~~~~v~~~~~~~ 77 (365)
T TIGR00611 1 MYLSRLELTDFRNYDAVDLELSPGVNVIVGPNGQGKTNLLEAIYYLALGRSH---RTSRDKPLIRFGAEAFVIEGRVSKG 77 (365)
T ss_pred CEEEEEEEeCCcceeeeEEEECCCeEEEECCCCCCHHHHHHHHHHHcccCCc---cccchhhHHhCCCCeEEEEEEEEeC
Confidence 8999999999999999999999999999999999999999999999888775 6667889999999999999999863
Q ss_pred CCCceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHHhcCChHHHHHHHHHhhC
Q 001581 101 TKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175 (1050)
Q Consensus 101 ~~~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~~~g 175 (1050)
+....+.+...+.+.+ ....+||..+. ...+++..+.. ++.+-.-..++..+|..++.+++..++
T Consensus 78 ~~~~~i~~~~~~~~~~-~~~~~~~~~~~--~~~~l~~~l~~-------v~~~p~~~~L~~g~p~~RR~fLD~~~~ 142 (365)
T TIGR00611 78 DREVTIPLEGLLKKKG-KKAKVNIDGQD--KLSDLAGLLPM-------QLFAPEDLTLVKGSPKYRRRFLDWGLF 142 (365)
T ss_pred CceEEEeEEEEEccCC-CeEEECCCCCc--CHHHHHhhccE-------EEecCCCHHHhcCChHHHHHHHHHHHH
Confidence 2222223333333322 34666766553 12344444422 222222234777899999999986654
No 47
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=99.73 E-value=2.1e-16 Score=160.73 Aligned_cols=141 Identities=23% Similarity=0.325 Sum_probs=116.8
Q ss_pred ceEEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCceeEEEEEEEeC
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1050)
|+|.+|.|.||++|.+++++|+|++|+++|+||+|||||+.||.++-.|++. |+....++|+.|+..+.|...+..
T Consensus 1 M~l~~L~L~nFRNy~~~~l~~~p~~nvl~G~NgqGKTNlLEAI~~l~~grS~---Rt~~~~~lir~~~~~~~i~~~v~~- 76 (363)
T COG1195 1 MYLLSLLLRNFRNYAELDLDLSPGVNVLVGENGQGKTNLLEAIYLLALGRSH---RTSRDKELIRTGADEAEISARVQR- 76 (363)
T ss_pred CceeeeehhhcCCcccceeccCCCcEEEECCCCCchHHHHHHHHHHccccCc---cccchhHHHhcCCccEEEEEEEee-
Confidence 8899999999999999999999999999999999999999999998888887 667889999999999999999995
Q ss_pred CCCceEEEEEEEecCCceeEEECCeecCHHHHHHHHHHcCcccccccccccchhhHHHhcCChHHHHHHHHHhhC
Q 001581 101 TKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175 (1050)
Q Consensus 101 ~~~~~~~i~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~~~g 175 (1050)
.+...++.=.+.+.|+..-.+||.++.. +.+++..+++-. |-|.+- .++.-+|..|+.+++..++
T Consensus 77 -~~~~~~~~~~~~~~g~~~vring~~~~~--~~el~g~l~~vl-----f~Pedl--~Lv~G~P~~RRrFLD~~l~ 141 (363)
T COG1195 77 -KGREGTLGLQISKKGRRRVRINGTKARK--LAELAGHLNVVL-----FTPEDL--GLVKGSPSDRRRFLDWLLF 141 (363)
T ss_pred -ccceeeeEEEeccCcceEEEECCccccc--HHHHhhhCceEE-----eccccc--ccccCCHHHHHHHHHHHHh
Confidence 4566666666766777779999988764 555666666532 222222 4677899999999988876
No 48
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.70 E-value=2.6e-17 Score=156.18 Aligned_cols=78 Identities=38% Similarity=0.620 Sum_probs=69.6
Q ss_pred EEEEEEecccccceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHhcCCCcccccccch---hhhhhcCCceeEEEEEEE
Q 001581 23 IIEIELHNFMTFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSI---GAYVKRGEESGYIKISLR 98 (1050)
Q Consensus 23 i~~l~l~nF~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~---~~~i~~g~~~a~v~i~~~ 98 (1050)
|++|+|.||+||...++.|.++ +|+|+||||||||||++||+|+|||++....|...+ .++++.|...|+|+|+|.
T Consensus 1 i~~i~l~nf~~~~~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~ 80 (178)
T cd03239 1 IKQITLKNFKSYRDETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFD 80 (178)
T ss_pred CcEEEEECccCCCCCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEE
Confidence 5789999999999878777655 999999999999999999999999999887776655 788999999999999998
Q ss_pred eC
Q 001581 99 GD 100 (1050)
Q Consensus 99 ~~ 100 (1050)
+.
T Consensus 81 ~~ 82 (178)
T cd03239 81 KS 82 (178)
T ss_pred Cc
Confidence 63
No 49
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.69 E-value=1.3e-13 Score=160.72 Aligned_cols=175 Identities=14% Similarity=0.160 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-h-HHHHHHHHHHHHH
Q 001581 814 IEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDAL-KEK-W-LPTLRNLVAQINE 890 (1050)
Q Consensus 814 ~~~l~~~i~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l-~~~-~-~~~~~~~~~~i~~ 890 (1050)
+..+..+...++.++..+.........++..+..++.++.....++......... +..+ ... . ..........++.
T Consensus 353 i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~-i~~~~~~~g~~~~i~~~~l~~~n~ 431 (562)
T PHA02562 353 LITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGI-VTDLLKDSGIKASIIKKYIPYFNK 431 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3444455555566666655555556666777777777777777777666554333 2222 221 1 1123344566666
Q ss_pred HHHHHHhcCCcceEEEeecCCCcccccceEEEEEecCCCCcccccccccCchhHHHHHHHHHHHhcc------cCCCCce
Q 001581 891 TFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQD------LTNCPFR 964 (1050)
Q Consensus 891 ~f~~~f~~l~~~g~~~l~~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lall~al~~------~~~~Pf~ 964 (1050)
.+..++..++ +...+. .+ .++...+... |.. ...+..|||||+.+++||+.|++.. ..+.|++
T Consensus 432 ~~~~~L~~l~--~~~~~~-~~-----~~~~~~~~~~-g~~--~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~l 500 (562)
T PHA02562 432 QINHYLQIME--ADYNFT-LD-----EEFNETIKSR-GRE--DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLL 500 (562)
T ss_pred HHHHHHHHhh--eeEEEE-ec-----hhhhhHHhcC-CCC--ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeE
Confidence 7777777664 344443 11 2333344443 221 2245569999999999999988422 2467899
Q ss_pred Eeeccc-cCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 965 VVDEIN-QGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 965 vlDEid-~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
||||++ ++||+.....+.+.|... . +.++|+|||..
T Consensus 501 ilDEp~~~~ld~~~~~~~~~~l~~~-~---~~~iiiish~~ 537 (562)
T PHA02562 501 ILDEVFDGALDAEGTKALLSILDSL-K---DTNVFVISHKD 537 (562)
T ss_pred EEecccCcccchhHHHHHHHHHHhC-C---CCeEEEEECch
Confidence 999996 789999999999888765 3 78999999993
No 50
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=99.65 E-value=2.3e-16 Score=114.75 Aligned_cols=49 Identities=39% Similarity=0.575 Sum_probs=45.2
Q ss_pred EEEEEEecccccceEEEecCC-c-eeEEEcCCCCChhHHHHHHHHHhcCCC
Q 001581 23 IIEIELHNFMTFDHLICKPGS-R-LNLVIGPNGSGKSSLVCAIALALGGDT 71 (1050)
Q Consensus 23 i~~l~l~nF~~~~~~~i~f~~-~-~~~I~G~NGsGKSti~~Ai~~~L~g~~ 71 (1050)
+.+|.|.||++|...+++|++ | +++|+||||||||||+|||.|+|+|..
T Consensus 1 L~rl~L~Nw~~f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 1 LTRLQLVNWGSFDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CcEEEEeccCccCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 468999999999999999984 3 899999999999999999999999977
No 51
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=99.63 E-value=6.5e-16 Score=154.63 Aligned_cols=75 Identities=36% Similarity=0.598 Sum_probs=54.7
Q ss_pred EEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccc---hh-hh-h-hcCCceeEEEEEEE
Q 001581 25 EIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATS---IG-AY-V-KRGEESGYIKISLR 98 (1050)
Q Consensus 25 ~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~---~~-~~-i-~~g~~~a~v~i~~~ 98 (1050)
+|+|.||++|.+.+|+|+||+|+|+||||+|||||++||+|||||.++....... .. ++ + +.+...+.+++.|.
T Consensus 1 ~i~i~nf~~~~~~~i~f~~g~~vi~G~Ng~GKStil~ai~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (202)
T PF13476_consen 1 KIHIKNFRSFKDLEIDFSPGLNVIYGPNGSGKSTILEAIRYALGGQSSRLKDDESQNIAKDEVEIEFEGNKESYIEIEFE 80 (202)
T ss_dssp EEEEEEETTEEEEEEE--SEEEEEEESTTSSHHHHHHHHHHHHHSS-TTSSCGCGCTTTSSCEEEEEEESSCEEEEEECE
T ss_pred CEEEEEeCCCcceEEEcCCCcEEEECCCCCCHHHHHHHHHHHHcCCCCCCCccccccccceeEEEEecCCCcEEEEEEEE
Confidence 6899999999999999999999999999999999999999999998764322110 01 11 1 12445566777776
Q ss_pred e
Q 001581 99 G 99 (1050)
Q Consensus 99 ~ 99 (1050)
.
T Consensus 81 ~ 81 (202)
T PF13476_consen 81 D 81 (202)
T ss_dssp E
T ss_pred E
Confidence 5
No 52
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.63 E-value=7.5e-16 Score=149.59 Aligned_cols=79 Identities=38% Similarity=0.655 Sum_probs=73.5
Q ss_pred EEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCceeEEEEEEEeCC
Q 001581 23 IIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGDT 101 (1050)
Q Consensus 23 i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~~ 101 (1050)
|.+|+|.||++|.++.|+|++|+|+|+||||||||||++||+++|+|......|+..+.++++.|...+.|.++|.+.+
T Consensus 1 i~~l~l~nfr~~~~~~l~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~ 79 (198)
T cd03276 1 IESITLKNFMCHRHLQIEFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQG 79 (198)
T ss_pred CeEEEEeCccceeeeEEecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCC
Confidence 6799999999999999999999999999999999999999999999998777788889999999999999999999743
No 53
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.61 E-value=5e-09 Score=116.97 Aligned_cols=206 Identities=17% Similarity=0.186 Sum_probs=168.8
Q ss_pred hHHHhcCChHHHHHHHHHhhCCCChhHH-----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 155 VCEFAKLSPVKLLEETEKAVGDPQLPVQ-----HCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAE 229 (1050)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~g~~~l~~~-----~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ 229 (1050)
+++++..-|+++...|.+.....-|.+. ..+|..++.++.+...+...++..++.-...+..|+..++.++.-.+
T Consensus 140 i~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE 219 (1072)
T KOG0979|consen 140 IDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVE 219 (1072)
T ss_pred cCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3345566799999999887754444433 24588899999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHhhcchhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHhhHHHHHHhHHhhHHHHHHHHHHHHHHH
Q 001581 230 LLEKVESMKKKLPWLKYDMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRR 309 (1050)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1050)
...+......++..+.....|-.|.....+..........+...+..+...+.++......++.+..+...+++.....+
T Consensus 220 ~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~ 299 (1072)
T KOG0979|consen 220 RVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQREL 299 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHH
Confidence 88888888888888888888999999999999999999999999999999999999999999888888888888888888
Q ss_pred HHHHHHhhh-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001581 310 MDFLEKVDQ-GVQVQGKYKEMQELRRQEQSRQQRILKAREELAAAELDLQTV 360 (1050)
Q Consensus 310 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 360 (1050)
.+...++.+ ...+.....++..+......++..-...++.+....+.+.++
T Consensus 300 ~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~ 351 (1072)
T KOG0979|consen 300 NEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDA 351 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777 777777777777777777777777777777766666655443
No 54
>PRK02224 chromosome segregation protein; Provisional
Probab=99.59 E-value=8.4e-09 Score=127.14 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCc-ceEEEeecCCCcc
Q 001581 839 LQEYEHRQRQIEDLSTKQEADK---KELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAV-AGEVSLDEHESDF 914 (1050)
Q Consensus 839 ~~~~~~~~~~~~~l~~~~~~l~---~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~f~~~f~~l~~-~g~~~l~~~~~~~ 914 (1050)
++.+.....++..+...+..+. .....+...+..+...+... ....+...|..+|..++. +++..|..++
T Consensus 690 ~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--- 763 (880)
T PRK02224 690 LEELEELRERREALENRVEALEALYDEAEELESMYGDLRAELRQR---NVETLERMLNETFDLVYQNDAYSHIELDG--- 763 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCeeEEEecC---
Confidence 3444445555555544444444 33344555555555444333 344555578888998864 3444544111
Q ss_pred cccceEEEEEecCCCCcccccccccCchhHHHHHHHHHHHhccc--------CCCCceEeeccccCCChHhHHHHHHHHH
Q 001581 915 DKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDL--------TNCPFRVVDEINQGMDPINERKMFQQLV 986 (1050)
Q Consensus 915 ~~~~l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lall~al~~~--------~~~Pf~vlDEid~~lD~~n~~~~~~~l~ 986 (1050)
++++. |..++|. .+++..||||++..++|||++|+... .|.|++||||++++||+.++..+..+|.
T Consensus 764 -~~~i~--~~~~~g~---~~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~ 837 (880)
T PRK02224 764 -EYELT--VYQKDGE---PLEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVE 837 (880)
T ss_pred -Cccee--eeCCCCC---ccChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHH
Confidence 35554 3323454 44566799999999999999987642 3567899999999999999999998887
Q ss_pred HHhcCCCCCeEEEEcCCC
Q 001581 987 RAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 987 ~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.+.. .+.+|||||||+.
T Consensus 838 ~~~~-~~~~qviiish~~ 854 (880)
T PRK02224 838 SMRR-LGVEQIVVVSHDD 854 (880)
T ss_pred HHHh-cCCCeEEEEECCh
Confidence 7653 2357999999995
No 55
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.54 E-value=2.8e-14 Score=139.61 Aligned_cols=91 Identities=23% Similarity=0.393 Sum_probs=76.2
Q ss_pred EEEEEEecccccc-eEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCccccc-ccchhhhhhcCCceeEEEEEEEeC
Q 001581 23 IIEIELHNFMTFD-HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGR-ATSIGAYVKRGEESGYIKISLRGD 100 (1050)
Q Consensus 23 i~~l~l~nF~~~~-~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r-~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1050)
|++|+|.||++|. ...++|++|+++|+|||||||||+++||+|+|+|....... .....+.+..+...+.|.+.|.+.
T Consensus 1 ~~~l~l~nfr~~~~~~~l~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~ 80 (204)
T cd03240 1 IDKLSIRNIRSFHERSEIEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENA 80 (204)
T ss_pred CcEEEEECcccccCceEEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeC
Confidence 5789999999955 78899999999999999999999999999999998764322 123467888888999999999974
Q ss_pred CCCceEEEEEEEec
Q 001581 101 TKEEHLTIMRKIDT 114 (1050)
Q Consensus 101 ~~~~~~~i~R~~~~ 114 (1050)
. +..++|.|.+..
T Consensus 81 ~-~~~~~v~r~~~~ 93 (204)
T cd03240 81 N-GKKYTITRSLAI 93 (204)
T ss_pred C-CCEEEEEEEhhH
Confidence 3 789999997643
No 56
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.53 E-value=2.5e-14 Score=141.95 Aligned_cols=90 Identities=27% Similarity=0.416 Sum_probs=75.1
Q ss_pred ceEEEEEEecccccc-eEEEecCCc----eeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCceeEEEE
Q 001581 21 GNIIEIELHNFMTFD-HLICKPGSR----LNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKI 95 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~-~~~i~f~~~----~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i 95 (1050)
|+|.+|+|+||++|. ...|+|.++ +++|+||||||||||++||.|+|+|.+....+.....+.+..+...+.|.+
T Consensus 1 m~~~~i~l~nf~~y~~~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (213)
T cd03279 1 MKPLKLELKNFGPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSF 80 (213)
T ss_pred CEEEEEEEECCcCcCCceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEE
Confidence 789999999999987 788998765 999999999999999999999999988754443334567777788899999
Q ss_pred EEEeCCCCceEEEEEEE
Q 001581 96 SLRGDTKEEHLTIMRKI 112 (1050)
Q Consensus 96 ~~~~~~~~~~~~i~R~~ 112 (1050)
.|.+ .+..+.+.|.+
T Consensus 81 ~f~~--~~~~~~~~r~~ 95 (213)
T cd03279 81 TFQL--GGKKYRVERSR 95 (213)
T ss_pred EEEE--CCeEEEEEEec
Confidence 9986 46777777754
No 57
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=3.9e-09 Score=118.52 Aligned_cols=185 Identities=12% Similarity=0.140 Sum_probs=135.6
Q ss_pred ChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchHHHHHHHHHHH
Q 001581 178 QLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWLKYDMKKAEYIAAK 257 (1050)
Q Consensus 178 ~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 257 (1050)
.|++.+....+++..|.+....+..+.......-.....+..+...++......+.+..+..+........+--++...+
T Consensus 147 ~LFEEISgSiElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE 226 (1141)
T KOG0018|consen 147 ALFEEISGSIELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVE 226 (1141)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45666666777888888888888888888877777777777777777777778888888888888877777777777888
Q ss_pred HHHHHHHHHHHHHHhhcccccchHhhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHhhh-------hHhHHHHHHHHH
Q 001581 258 EQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLEKVDQ-------GVQVQGKYKEMQ 330 (1050)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~ 330 (1050)
..+.....++..+.+++..+....+.....+.....+...+..++......+......+.. ..+...+..++.
T Consensus 227 ~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~ 306 (1141)
T KOG0018|consen 227 ACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLE 306 (1141)
T ss_pred hhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHH
Confidence 8888888888888888888877777777777777766666666666666665555544433 233445556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 001581 331 ELRRQEQSRQQRILKAREELAAAELDLQTVPA 362 (1050)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 362 (1050)
..+..+...+.........++.++.++..+..
T Consensus 307 ~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~ 338 (1141)
T KOG0018|consen 307 EIEKDIETAKKDYRALKETIERLEKELKAVEG 338 (1141)
T ss_pred HhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777766543
No 58
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.52 E-value=1.7e-07 Score=100.34 Aligned_cols=49 Identities=27% Similarity=0.319 Sum_probs=44.9
Q ss_pred CCceEEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHh
Q 001581 19 MPGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 19 ~~~~i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
.-|++.+++|.||-.|-..+|+++.-+|.+.|.||+||||.|.|...+|
T Consensus 3 eRGKfrSLTliNWNGFFARTFDlDeLVTTLSGGNGAGKSTTMA~FvTAL 51 (1480)
T COG3096 3 ERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTAL 51 (1480)
T ss_pred cccccceeeEeeccchhhhhccHHHHHHhccCCCCCcccchHHHHHHHH
Confidence 4588999999999888878889998899999999999999999998888
No 59
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.46 E-value=1e-06 Score=109.19 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=11.1
Q ss_pred HHHHHHHHhcCCCccc
Q 001581 59 LVCAIALALGGDTQLL 74 (1050)
Q Consensus 59 i~~Ai~~~L~g~~~~~ 74 (1050)
++.+|+.|=-|.|.+.
T Consensus 690 VLEgIRicR~GfPnr~ 705 (1930)
T KOG0161|consen 690 VLEGIRICRQGFPNRM 705 (1930)
T ss_pred cHHHHHHHHhhCcccc
Confidence 4667777777888754
No 60
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.38 E-value=3.4e-06 Score=104.84 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=5.6
Q ss_pred chhhHHHhcCC
Q 001581 152 QDRVCEFAKLS 162 (1050)
Q Consensus 152 q~~~~~~~~~~ 162 (1050)
|-.+..++...
T Consensus 806 Q~N~r~~~~lr 816 (1930)
T KOG0161|consen 806 QRNIRAYLKLR 816 (1930)
T ss_pred HHHHHHHHhhc
Confidence 55555555443
No 61
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.38 E-value=9.5e-13 Score=127.81 Aligned_cols=78 Identities=27% Similarity=0.450 Sum_probs=64.7
Q ss_pred EEEEEEeccccc-ceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCc------eeEEEE
Q 001581 23 IIEIELHNFMTF-DHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEE------SGYIKI 95 (1050)
Q Consensus 23 i~~l~l~nF~~~-~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~------~a~v~i 95 (1050)
|++|.|.||++| ....++|.+|+++|+|||||||||+++||.|+++.......|+....++++.|.. .+.|.+
T Consensus 1 ~~~~~~~~fr~~~~~~~l~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (197)
T cd03278 1 LKKLELKGFKSFADKTTIPFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTL 80 (197)
T ss_pred CcEEEEeCCcCcCCCeeeecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEE
Confidence 568999999999 5889999999999999999999999999999997554444466677788877654 478888
Q ss_pred EEEeC
Q 001581 96 SLRGD 100 (1050)
Q Consensus 96 ~~~~~ 100 (1050)
.|.+.
T Consensus 81 vfq~~ 85 (197)
T cd03278 81 TFDNS 85 (197)
T ss_pred EEEcC
Confidence 88864
No 62
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.35 E-value=3e-06 Score=105.25 Aligned_cols=70 Identities=13% Similarity=0.104 Sum_probs=58.1
Q ss_pred CChHHHHHHHHHhhCCCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 161 LSPVKLLEETEKAVGDPQLPVQHCALVEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVES 236 (1050)
Q Consensus 161 ~~~~~~~~~~~~~~g~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 236 (1050)
..|.+|+.+|++++|.. .+..+...++...+.++..+...+.++...+..|+.+.+.+.++..+..++..
T Consensus 276 r~~eERR~liEEAag~r------~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr 345 (1486)
T PRK04863 276 RHANERRVHLEEALELR------RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALR 345 (1486)
T ss_pred hCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999998732 55667788889999999999999999999999999999999888777666333
No 63
>PRK03918 chromosome segregation protein; Provisional
Probab=99.31 E-value=1.7e-05 Score=98.51 Aligned_cols=114 Identities=19% Similarity=0.268 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHhcCCcceEEEeecCCCcccccceEEEEEecCCCCcccccccccCchhHHHHHHHHHHHhc--ccC
Q 001581 882 RNLVAQINETFSRNFQEMAVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQ--DLT 959 (1050)
Q Consensus 882 ~~~~~~i~~~f~~~f~~l~~~g~~~l~~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lall~al~--~~~ 959 (1050)
..++..++..|..+|..++.+++-.+.... ....+.+.+.. +|. ...+..||||++.+++||+.+||. -+.
T Consensus 739 ~~~~~~l~~~~~~if~~l~~~~~~~~~l~~---~~~~~~i~~l~-~g~---~~~~~~lS~G~~~~~~la~rlal~~~l~~ 811 (880)
T PRK03918 739 ERALSKVGEIASEIFEELTEGKYSGVRVKA---EENKVKLFVVY-QGK---ERPLTFLSGGERIALGLAFRLALSLYLAG 811 (880)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEEEec---CCCceEEEEeC-CCC---cCChhhCCHhHHHHHHHHHHHHHHHHhcC
Confidence 345667777888899988755543322111 12334555543 343 234456999999999999887764 346
Q ss_pred CCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 960 NCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 960 ~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
++||+||||++++||+.++..++.+|...+. ...|+|+|||+.
T Consensus 812 ~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~--~~~~iiiith~~ 854 (880)
T PRK03918 812 NIPLLILDEPTPFLDEERRRKLVDIMERYLR--KIPQVIIVSHDE 854 (880)
T ss_pred CCCeEEEeCCCcccCHHHHHHHHHHHHHHHh--cCCEEEEEECCH
Confidence 7899999999999999999999998887654 257999999994
No 64
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.30 E-value=9e-12 Score=122.41 Aligned_cols=107 Identities=64% Similarity=1.023 Sum_probs=90.9
Q ss_pred eEEEEEecCCCCcccccccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEE
Q 001581 919 ILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCF 998 (1050)
Q Consensus 919 l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i 998 (1050)
.++.++++.+.+.....+..||||||.++.++.+||++.+.+.|+++|||++++||+.++..+.+.|...+.....+++|
T Consensus 107 ~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~vi 186 (213)
T cd03277 107 IELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYF 186 (213)
T ss_pred HhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEE
Confidence 34567776665556677788999999999999999988888899999999999999999999999898876521346899
Q ss_pred EEcCCCCCCCCCCCCeEEEEEecCCCC
Q 001581 999 LLTPKLLPDLEYSEACSILNIMNGPWI 1025 (1050)
Q Consensus 999 ~iTp~~l~~l~~~~~~~~~~~~~~~~~ 1025 (1050)
++||+....+.+.+.++|+++.+|+++
T Consensus 187 iith~~~~~~~~~~~~~v~~l~~g~~~ 213 (213)
T cd03277 187 LITPKLLPGLNYHEKMTVLCVYNGPHI 213 (213)
T ss_pred EEchhhccCCcccCceEEEEEecCccC
Confidence 999999888888888999998999875
No 65
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.27 E-value=9.4e-12 Score=122.35 Aligned_cols=78 Identities=19% Similarity=0.349 Sum_probs=60.1
Q ss_pred ceEEEEEEecccccceEEE--ecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCC-----ceeEE
Q 001581 21 GNIIEIELHNFMTFDHLIC--KPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGE-----ESGYI 93 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~~~~i--~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~-----~~a~v 93 (1050)
|.|++|+|.||++|....+ ++++.+++|+|||||||||+++||.|++|.... ..|...+..++..+. ..+.|
T Consensus 1 ~~~~~l~l~nfk~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~~~~G~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~ 79 (212)
T cd03274 1 LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGFRAS-KMRQKKLSDLIHNSAGHPNLDSCSV 79 (212)
T ss_pred CeEEEEEEECcccCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHHHHhccCHH-HhhhhhHHHHhcCCCCCCCCceEEE
Confidence 7899999999999984443 566789999999999999999999999886543 234445667776543 35677
Q ss_pred EEEEEe
Q 001581 94 KISLRG 99 (1050)
Q Consensus 94 ~i~~~~ 99 (1050)
...|..
T Consensus 80 ~~~~~~ 85 (212)
T cd03274 80 EVHFQE 85 (212)
T ss_pred EEEEEe
Confidence 777764
No 66
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=99.14 E-value=2e-11 Score=119.30 Aligned_cols=51 Identities=35% Similarity=0.486 Sum_probs=47.6
Q ss_pred ceEEEEEEecccccceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHhcCCC
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALALGGDT 71 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L~g~~ 71 (1050)
|+|.+|.|.||+||.++.|.|+++ +|+|+|||||||||+++||+.||.-..
T Consensus 1 mrLrkiSl~nfr~f~~lditf~e~~ttIivgpNGsGKTtvLdair~aL~~fi 52 (440)
T COG3950 1 MRLRKISLNNFRCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKFI 52 (440)
T ss_pred CccchhhhhhhhhhhhceeecCCCceEEEECCCCCChhhHHHHHHHHHHhhc
Confidence 789999999999999999999988 999999999999999999999996433
No 67
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=99.10 E-value=5e-05 Score=87.25 Aligned_cols=174 Identities=15% Similarity=0.142 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 702 LAKLVDQAADLNIQQFKYAIEIKNLLVEIVSCKWSYAEKHMASIEFDAKIRELEFNLKQHEKLALQASLHYEDCKKEVEH 781 (1050)
Q Consensus 702 ~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 781 (1050)
...+..++..+..........+... ...+..+...+..+...+..+......+...+..+...-..++..+..
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~-------~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~ 422 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQ-------EIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLER 422 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444544444444443333333 333344444444444444444444444444455555555555555555
Q ss_pred HHHHHHHHHHHHHH--hhcCChHHHHHHhcccCCHHHHHHHHHHHHHhhhhccCCCHHHHH-HHHHHHHHHHHHHHHHHH
Q 001581 782 CRKHLSDAKRQAES--IAFITPELEKEFLEMPTTIEELEAAIQDNISQANSIFFLNQNILQ-EYEHRQRQIEDLSTKQEA 858 (1050)
Q Consensus 782 ~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 858 (1050)
+...+...+..+.. +..+...+.. ....+..++..+...++. +++|..+++ +|+.+..++..+..+..+
T Consensus 423 ~~~~L~~ikr~l~k~~lpgip~~y~~-------~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~d 494 (569)
T PRK04778 423 YRNKLHEIKRYLEKSNLPGLPEDYLE-------MFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEE 494 (569)
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHH-------HHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444432 2222222222 245677888999999999 999999988 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001581 859 DKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRN 895 (1050)
Q Consensus 859 l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~f~~~ 895 (1050)
+..+...+...|.. .++|+..|..|+..|...
T Consensus 495 L~~~a~~lE~~Iqy-----~nRfr~~~~~V~~~f~~A 526 (569)
T PRK04778 495 LVENATLTEQLIQY-----ANRYRSDNEEVAEALNEA 526 (569)
T ss_pred HHHHHHHHHHHHHH-----HhccCCCCHHHHHHHHHH
Confidence 99999999999987 667777888888888764
No 68
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.04 E-value=2.3e-10 Score=107.83 Aligned_cols=69 Identities=36% Similarity=0.474 Sum_probs=56.3
Q ss_pred EEEEecccccc-eEEEecCC-ceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhhcCCceeEEEEEE
Q 001581 25 EIELHNFMTFD-HLICKPGS-RLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISL 97 (1050)
Q Consensus 25 ~l~l~nF~~~~-~~~i~f~~-~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~ 97 (1050)
+|.+.||++|. ...|+|.+ ++++|+|||||||||+++||.|+++.......| .+.++.|...+.++++|
T Consensus 1 ~i~~~~~~~~~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~ 71 (162)
T cd03227 1 KIVLGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRR----RSGVKAGCIVAAVSAEL 71 (162)
T ss_pred CceeCCCCEEEeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc----cCcccCCCcceeeEEEE
Confidence 36789999987 77888764 599999999999999999999999998876666 34446677777777776
No 69
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.02 E-value=0.00038 Score=87.74 Aligned_cols=38 Identities=29% Similarity=0.348 Sum_probs=30.9
Q ss_pred EEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCccccc
Q 001581 38 ICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGR 76 (1050)
Q Consensus 38 ~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r 76 (1050)
+|.++ |-|-|+|-||+||||++.+|-+-.|..|++...
T Consensus 13 El~lD-G~t~i~GTNG~GKTTlLRlip~FYGa~p~rlv~ 50 (1201)
T PF12128_consen 13 ELKLD-GHTHICGTNGVGKTTLLRLIPFFYGADPSRLVP 50 (1201)
T ss_pred EEecC-CceeeecCCCCcHHHHHHHHHHhcCCCccccCC
Confidence 56665 567899999999999999998877777776543
No 70
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=0.00045 Score=88.29 Aligned_cols=163 Identities=12% Similarity=0.191 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcceE---EEeecCCCc-cc
Q 001581 840 QEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGE---VSLDEHESD-FD 915 (1050)
Q Consensus 840 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~f~~~f~~l~~~g~---~~l~~~~~~-~~ 915 (1050)
.+|..+..+|....-++.........|......++..+......-...||.....+|+..+.|.. +.+.++.++ ..
T Consensus 1094 ~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~w~~~~~~~~~~~i~~~~~~~~~~~ 1173 (1311)
T TIGR00606 1094 PQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEINKIIRDLWRSTYRGQDIEYIEIRSDADENVS 1173 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHhhcCCCCChHHH
Confidence 46778888888888888888888888888888888887777777889999999999998877543 444312110 00
Q ss_pred ----ccceEEEEEecCCCCccccc-ccccCchhHHHHHHHHHHHhcc--cCCCCceEeeccccCCChHhHHHHHHHHHHH
Q 001581 916 ----KFGILIKVKFRQSGQLEVLS-AHHQSGGERSVSTILYLVSLQD--LTNCPFRVVDEINQGMDPINERKMFQQLVRA 988 (1050)
Q Consensus 916 ----~~~l~i~v~~~~~~~~~~~~-~~~lSGGErs~~~lall~al~~--~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~ 988 (1050)
.....+.|..+.|.. .++ ...||||++.++.|.+.+||.. +.++|+++|||+++|||+.+...+...|...
T Consensus 1174 ~~~~~~~~~~~~~~~~~~~--~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~ 1251 (1311)
T TIGR00606 1174 ASDKRRNYNYRVVMLKGDT--ALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEI 1251 (1311)
T ss_pred HHHHcCchHHHhccCCCCe--ecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHH
Confidence 011233444433421 232 3569999999877777766543 4678899999999999999999988888775
Q ss_pred hc---CCCCCeEEEEcCCC
Q 001581 989 AS---QPNTPQCFLLTPKL 1004 (1050)
Q Consensus 989 ~~---~~~~~Q~i~iTp~~ 1004 (1050)
.. ...+.++|||||..
T Consensus 1252 ~~~~~~~~~~~viiitHd~ 1270 (1311)
T TIGR00606 1252 IKSRSQQRNFQLLVITHDE 1270 (1311)
T ss_pred HHhhhhccCCeEEEEecCH
Confidence 32 12367999999994
No 71
>PF13166 AAA_13: AAA domain
Probab=98.97 E-value=4.8e-07 Score=109.02 Aligned_cols=146 Identities=17% Similarity=0.264 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcceEEEeecCCCcccccceEEEE
Q 001581 844 HRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLDEHESDFDKFGILIKV 923 (1050)
Q Consensus 844 ~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~f~~~f~~l~~~g~~~l~~~~~~~~~~~l~i~v 923 (1050)
.+...+..+...+..+...+..+...+..+...... . ......|...+..+|. ..+.|.... ...|..|..
T Consensus 421 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~----~~~~~~iN~~L~~~g~-~~~~l~~~~---~~~~y~l~~ 491 (712)
T PF13166_consen 421 ELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKN-T----EPAADRINEELKRLGF-SNFSLEIVD---DDKGYKLQR 491 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h----HHHHHHHHHHHHHhCC-CCeEEEEec---CCCeEEEEE
Confidence 333344444444445555555555555555443331 1 3333445556666632 344554111 133443333
Q ss_pred EecCCCCcccccccccCchhHHHHHHHHHHHhcc-----cCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEE
Q 001581 924 KFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQD-----LTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCF 998 (1050)
Q Consensus 924 ~~~~~~~~~~~~~~~lSGGErs~~~lall~al~~-----~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i 998 (1050)
+++.+ +. ..||-|||+.+|+||-||... ....++.|||++=.-||..++..++.+|.+........|+|
T Consensus 492 --~~~~~--~~--~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~Qvi 565 (712)
T PF13166_consen 492 --KGGSK--PA--KILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVI 565 (712)
T ss_pred --CCCCc--cc--CccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEE
Confidence 22321 22 449999999999999999544 12456789999999999999999999999986223489999
Q ss_pred EEcCCC
Q 001581 999 LLTPKL 1004 (1050)
Q Consensus 999 ~iTp~~ 1004 (1050)
|+||..
T Consensus 566 IlTHn~ 571 (712)
T PF13166_consen 566 ILTHNL 571 (712)
T ss_pred EEeCcH
Confidence 999984
No 72
>PRK01156 chromosome segregation protein; Provisional
Probab=98.90 E-value=0.00081 Score=83.35 Aligned_cols=70 Identities=14% Similarity=0.229 Sum_probs=57.3
Q ss_pred cccccCchhHHHHHHHHHHHhcc--cCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCC-CCeEEEEcCCC
Q 001581 935 SAHHQSGGERSVSTILYLVSLQD--LTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPN-TPQCFLLTPKL 1004 (1050)
Q Consensus 935 ~~~~lSGGErs~~~lall~al~~--~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~-~~Q~i~iTp~~ 1004 (1050)
++..||||++.+++||++||+.. +.++||++|||+++|||+.+...++++|...+...+ .+|+|||||+.
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~ 870 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR 870 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch
Confidence 44569999999999999988754 467899999999999999999998888765433222 36999999995
No 73
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.86 E-value=1.2e-08 Score=99.26 Aligned_cols=91 Identities=32% Similarity=0.477 Sum_probs=74.0
Q ss_pred cccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCe
Q 001581 935 SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEAC 1014 (1050)
Q Consensus 935 ~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~~ 1014 (1050)
.+..||||||.++++|..+++|.+.++||++|||++++||..++..+.++|.+......+.++|+||.|.+..+...+.+
T Consensus 106 ~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v 185 (198)
T cd03276 106 DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDV 185 (198)
T ss_pred cccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccce
Confidence 45679999999999999999998899999999999999999999999998887654212467888887777776555777
Q ss_pred EEEEEecCCCCC
Q 001581 1015 SILNIMNGPWIE 1026 (1050)
Q Consensus 1015 ~~~~~~~~~~~~ 1026 (1050)
.|+. +-.|.-|
T Consensus 186 ~~~~-~~~~~~~ 196 (198)
T cd03276 186 KVFR-MKDPRGP 196 (198)
T ss_pred eEEE-ecCCCCC
Confidence 7774 5666544
No 74
>PF11398 DUF2813: Protein of unknown function (DUF2813); InterPro: IPR022602 This entry contains YbjD from Escherichia coli (strain K12), which is a conserved protein with a nucleotide triphosphate binding domain.
Probab=98.83 E-value=9.4e-09 Score=107.35 Aligned_cols=61 Identities=26% Similarity=0.288 Sum_probs=52.4
Q ss_pred ceEEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhh
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYV 84 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i 84 (1050)
|+|.+|+|.||+++...+|+|++ +|+++|+|++||||+++||+++|+.... .|.-+..||=
T Consensus 1 M~l~~i~i~~FRgi~~~~~~l~~-~t~liG~N~~GKss~l~Al~~~l~~~~~--~~~f~~~DFh 61 (373)
T PF11398_consen 1 MKLERIEISNFRGIKRLSLPLDD-NTVLIGENNWGKSSLLDALSLLLSPSRR--LYQFTESDFH 61 (373)
T ss_pred CeEEEEEEeccCccceEEEEecC-ceEEEcCCCccHhHHHHHHHHHhCCCcc--ccccCHHHhC
Confidence 89999999999999999999986 8999999999999999999999997643 2333555664
No 75
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.70 E-value=0.0031 Score=78.01 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 632 SVDELEESLKSMQTEQRLIEDEAAKLQKER 661 (1050)
Q Consensus 632 ~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~ 661 (1050)
.+.++..++..+..++..++..+..+..++
T Consensus 1244 k~qEl~~~i~kl~~el~plq~~l~el~~e~ 1273 (1822)
T KOG4674|consen 1244 KIQELRDKIEKLNFELAPLQNELKELKAEL 1273 (1822)
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 76
>COG5293 Predicted ATPase [General function prediction only]
Probab=98.66 E-value=0.00013 Score=74.69 Aligned_cols=35 Identities=37% Similarity=0.536 Sum_probs=31.5
Q ss_pred EEecCCceeEEEc-----------CCCCChhHHHHHHHHHhcCCCc
Q 001581 38 ICKPGSRLNLVIG-----------PNGSGKSSLVCAIALALGGDTQ 72 (1050)
Q Consensus 38 ~i~f~~~~~~I~G-----------~NGsGKSti~~Ai~~~L~g~~~ 72 (1050)
++.|.||+|+|.| .||-||||++..|.||||+.-.
T Consensus 20 ~vkFnpGlNIVlae~red~~~~~~tnglGKSTlie~i~Fclg~ti~ 65 (591)
T COG5293 20 PVKFNPGLNIVLAEIREDENRKKDTNGLGKSTLIELIDFCLGSTID 65 (591)
T ss_pred eeeeCCCceEEeeeccCcccccccccCcchhhHHHHHHHHhccccc
Confidence 3678899999998 4999999999999999998766
No 77
>PF04310 MukB: MukB N-terminal; InterPro: IPR007406 This is the N-terminal region of MukB. MukB is involved in the segregation and condensation of prokaryotic chromosomes. MukE (IPR007385 from INTERPRO) along with MukF (IPR005582 from INTERPRO) interact with MukB in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side []. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif. In other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0007059 chromosome segregation, 0030261 chromosome condensation, 0009295 nucleoid; PDB: 1QHL_A 3EUK_H 3EUJ_A.
Probab=98.64 E-value=9.4e-08 Score=86.67 Aligned_cols=89 Identities=21% Similarity=0.200 Sum_probs=62.7
Q ss_pred CceEEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHh--------cCCCcc-----cccccchhhhhhc
Q 001581 20 PGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALAL--------GGDTQL-----LGRATSIGAYVKR 86 (1050)
Q Consensus 20 ~~~i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L--------~g~~~~-----~~r~~~~~~~i~~ 86 (1050)
-|++.+|.|.||..|-..++++..-+|...|.||+||||+|.|+..+| ++.... ..|...+-..+..
T Consensus 4 r~k~~SLtlVNwNG~fartfdLd~lvTtL~G~NGAGKsT~m~Af~taLIPD~~~l~f~ntteag~ts~srDkgl~gkL~~ 83 (227)
T PF04310_consen 4 RGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFITALIPDQTLLHFRNTTEAGATSGSRDKGLFGKLGP 83 (227)
T ss_dssp B-EEEEEEEECETTECEEEEEHHCCCCCCCCSTTCCHHHHHHHHHHHHS--TTT-----TTTSS-S-TSS--STCCCC-S
T ss_pred ccccceEEEEeecCeeeeEeehhhheEeeecCCCCcchhhHHHHHHHhcccceEEeecccccccccccccchhhhhhcCC
Confidence 489999999999999999999999999999999999999999999999 222221 1133333334434
Q ss_pred CCceeEEEEEEEeCCCCceEEEEE
Q 001581 87 GEESGYIKISLRGDTKEEHLTIMR 110 (1050)
Q Consensus 87 g~~~a~v~i~~~~~~~~~~~~i~R 110 (1050)
..|++.+.+.|+.+...+.+.|
T Consensus 84 --g~~ya~ldv~ns~~qR~l~gVr 105 (227)
T PF04310_consen 84 --GSCYAALDVVNSRGQRLLFGVR 105 (227)
T ss_dssp --SEEEEEEEEEETTTEEEEEEEE
T ss_pred --CceEEeeeecccCCcEEEEEEE
Confidence 3788888888865444444444
No 78
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=98.61 E-value=3.5e-08 Score=107.97 Aligned_cols=63 Identities=29% Similarity=0.419 Sum_probs=54.3
Q ss_pred ceEEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhhhhh
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVK 85 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~~i~ 85 (1050)
|+|.+|+|.||+||..+++.|+.|+|+|+|+|-+|||||+|||+.+|...+.. ..-.++|+++
T Consensus 1 M~L~~v~I~nFR~i~~lsl~~~~g~~vlIGeN~~GKsslLdAL~l~l~~~~~~--~~f~~~d~~~ 63 (581)
T COG3593 1 MHLERVKIKNFRGINRLSLEFEEGLNVLIGENNSGKSSLLDALRLLLDPESDL--YSFTLDDFHF 63 (581)
T ss_pred CcceeEEecccceeeeeeeeecCCceEEEcCCCcchHHHHHHHHHHcCCcccc--cceeeccCcc
Confidence 89999999999999999999999999999999999999999999999875321 3335556664
No 79
>COG1106 Predicted ATPases [General function prediction only]
Probab=98.59 E-value=3.2e-08 Score=102.48 Aligned_cols=50 Identities=32% Similarity=0.516 Sum_probs=43.7
Q ss_pred eEEEEEEecccccceEEEe-cCCceeEEEcCCCCChhHHHHHHHHHhcCCCc
Q 001581 22 NIIEIELHNFMTFDHLICK-PGSRLNLVIGPNGSGKSSLVCAIALALGGDTQ 72 (1050)
Q Consensus 22 ~i~~l~l~nF~~~~~~~i~-f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~ 72 (1050)
.|.+++|.||+||.+..+. |. ++|+|+|+|||||||+++||.+..+--.+
T Consensus 1 MI~~~~IkNFkSf~e~~~~~~~-~in~I~G~N~sGKSNlleAl~f~~~~~~~ 51 (371)
T COG1106 1 MIKSFKIKNFKSFRELELEDFG-KINIIYGANGAGKSNLLEALYFLKGLISP 51 (371)
T ss_pred CceEEEecccccHHHhhhcccc-ceEEEEcCCCCchhHHHHHHHHHHHhccC
Confidence 3789999999999988776 65 59999999999999999999998865444
No 80
>PF13175 AAA_15: AAA ATPase domain
Probab=98.57 E-value=4.5e-08 Score=110.41 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=57.2
Q ss_pred cccccccCchhHHHHHHHHHHHhccc--CCCC----ceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCC
Q 001581 933 VLSAHHQSGGERSVSTILYLVSLQDL--TNCP----FRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPK 1003 (1050)
Q Consensus 933 ~~~~~~lSGGErs~~~lall~al~~~--~~~P----f~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~ 1003 (1050)
.+....+|.|++.+..++++++.... ...+ ++++||+.++|-|...+.+++.|.+.+. ..+.|||+-||-
T Consensus 336 ~~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~-~~~~QiiitTHS 411 (415)
T PF13175_consen 336 SIPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSK-NNNIQIIITTHS 411 (415)
T ss_pred cCChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhc-cCCCEEEEECCC
Confidence 45566799999999999988875432 2223 8999999999999999999999998876 457899999985
No 81
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.56 E-value=0.00022 Score=71.56 Aligned_cols=228 Identities=12% Similarity=0.161 Sum_probs=94.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh--chHHHHHHHHHHHHHHHHHH
Q 001581 187 VEKSSKLKTIECTVKRNGDTLNQLKALNVEQEKDVERVRQRAELLEKVESMKKKLPWL--KYDMKKAEYIAAKEQEKDAK 264 (1050)
Q Consensus 187 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 264 (1050)
..+...+..+...+..+...+..........+.++..+. .++..++..+... .+......+..+........
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~------rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~e 77 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQ------RRIQLLEEELERAEERLEEATEKLEEAEKRADESE 77 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555443 2333333332222 12233333444444444444
Q ss_pred HHHHHHHhhcccccchHhhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHhhh-hHhHHHHHHHHHHHHHHHHHHHHHH
Q 001581 265 KKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLEKVDQ-GVQVQGKYKEMQELRRQEQSRQQRI 343 (1050)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~ 343 (1050)
..+..++.........+..++..+..+..........+.....++..+...+.. ......+...+..+...+..+...+
T Consensus 78 r~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~l 157 (237)
T PF00261_consen 78 RARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNL 157 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 444433333333333333343333333333333333333333333333333333 3333333333333333333333333
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHH
Q 001581 344 LKAREELAAAELDLQTVPAYEPPHDKIEKLGSQILELGVQANQKRLQKSEKEKILNQNKLTLRQCSDRLKDMEDKNNKLL 423 (1050)
Q Consensus 344 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 423 (1050)
..++..-........ .+..++..+..++...+.....+...+..++..+..+...+...+.+...+...+...+
T Consensus 158 k~lE~~~~~~~~re~------~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l 231 (237)
T PF00261_consen 158 KSLEASEEKASERED------EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTL 231 (237)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222222211111 11233444444444444444445555555555555555555555555555555554444
Q ss_pred HHH
Q 001581 424 HAL 426 (1050)
Q Consensus 424 ~~l 426 (1050)
..+
T Consensus 232 ~el 234 (237)
T PF00261_consen 232 NEL 234 (237)
T ss_dssp HHC
T ss_pred HHh
Confidence 443
No 82
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.53 E-value=4.9e-06 Score=89.18 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcce-EEEee-cCC--C--c----------------------c
Q 001581 863 LKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAG-EVSLD-EHE--S--D----------------------F 914 (1050)
Q Consensus 863 ~~~l~~~i~~l~~~~~~~~~~~~~~i~~~f~~~f~~l~~~g-~~~l~-~~~--~--~----------------------~ 914 (1050)
+..+...+..+-..+......++..++..|..++..+.++. .+.+. ... . + |
T Consensus 179 l~~w~~~L~~~g~~i~~~R~~~~~~l~~~~~~~~~~l~~~~~~~~l~y~~~~~~~~~~~~~~L~~~~~~d~~~g~T~~GP 258 (365)
T TIGR00611 179 LEVWDSQLAELGAKVSAWRAEFIEKLEPEAQKAHQLLLPELESLSLFYRGELWDKETDYAEALARNFERDLERGYTLVGP 258 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEeCchHHHHHHHHHHHHHhHHHHHHcCCCCCCc
Confidence 55666777777777777777788888888888888875432 44444 111 0 0 1
Q ss_pred cccceEEEEEecCCCCcccccccccCchhHHHHHHHHHHHhc-----ccCCCCceEeeccccCCChHhHHHHHHHHHHHh
Q 001581 915 DKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQ-----DLTNCPFRVVDEINQGMDPINERKMFQQLVRAA 989 (1050)
Q Consensus 915 ~~~~l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lall~al~-----~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~ 989 (1050)
....+.|.+ +|.+.. ..+|+||+-.++||+.||.. .....|+++|||+.++||+.++..+++.|...
T Consensus 259 HRdDl~~~~---~g~~~~----~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~- 330 (365)
T TIGR00611 259 HRDDLRFRL---NGLPVE----DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL- 330 (365)
T ss_pred chhceEEEE---CCEEHH----HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc-
Confidence 122243333 232211 23999999999999999962 23468999999999999999999988887532
Q ss_pred cCCCCCeEEEEcCCC--CCCCCCCCCeEEEEE
Q 001581 990 SQPNTPQCFLLTPKL--LPDLEYSEACSILNI 1019 (1050)
Q Consensus 990 ~~~~~~Q~i~iTp~~--l~~l~~~~~~~~~~~ 1019 (1050)
+.|+|+.||+. ++.+.......++.+
T Consensus 331 ----~~qv~it~~~~~~~~~~~~~~~~~~~~~ 358 (365)
T TIGR00611 331 ----GVQVFVTAISLDHLKEMWDPNRVTIALV 358 (365)
T ss_pred ----CCEEEEEecChhhccchhcccceEEEEE
Confidence 46999999873 455555555555544
No 83
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.53 E-value=9.3e-05 Score=74.17 Aligned_cols=41 Identities=32% Similarity=0.430 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 622 LRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKERE 662 (1050)
Q Consensus 622 l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~ 662 (1050)
+..+++.....+..+..++.........+..++..+.+++.
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~ 46 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQ 46 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333333333333333333333
No 84
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.53 E-value=1.8e-07 Score=91.01 Aligned_cols=76 Identities=21% Similarity=0.379 Sum_probs=62.5
Q ss_pred cccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCe
Q 001581 935 SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEAC 1014 (1050)
Q Consensus 935 ~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~~ 1014 (1050)
.+..||||||.++++|..+++....|.|+++|||++++||+.+...+.+.|.+.+. +.++|++||.. .-+.+.+.+
T Consensus 110 ~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~---~~tiIiitH~~-~~~~~~d~v 185 (197)
T cd03278 110 RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK---ETQFIVITHRK-GTMEAADRL 185 (197)
T ss_pred chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc---CCEEEEEECCH-HHHhhcceE
Confidence 45669999999999999998655678889999999999999999999998887754 58899999995 223444443
No 85
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.51 E-value=4.8e-08 Score=95.33 Aligned_cols=46 Identities=33% Similarity=0.542 Sum_probs=41.4
Q ss_pred ceEEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHh
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
|.|.+|.++||++|....++. +++|+|+|.||+||||+++|+.++=
T Consensus 1 ~~l~si~vknyRs~r~l~lei-~~~nviIGANGaGKSn~~~~l~~l~ 46 (373)
T COG4637 1 MMLVSIKVKNYRSFRSLDLEI-RRVNVIIGANGAGKSNFYDALRLLA 46 (373)
T ss_pred CccchhhhhcchhHHhccccc-cceEEEEcCCCCchhHHHHHHHHHH
Confidence 678999999999999888866 4799999999999999999998764
No 86
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.50 E-value=2.6e-07 Score=87.97 Aligned_cols=64 Identities=36% Similarity=0.614 Sum_probs=58.3
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+||||+.+++|+..++.+.+.+.|+++|||++++||+.+...+++.|.+.+.. +.++|++||..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~--g~tiIiiSH~~ 158 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH--TSQFIVITLKK 158 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEECCH
Confidence 99999999999999998878888999999999999999999999988887652 58999999984
No 87
>PF13166 AAA_13: AAA domain
Probab=98.46 E-value=0.00017 Score=87.08 Aligned_cols=42 Identities=33% Similarity=0.468 Sum_probs=35.3
Q ss_pred cccccc--eEEEecCCceeEEEcCCCCChhHHHHHHHHHhcCCC
Q 001581 30 NFMTFD--HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDT 71 (1050)
Q Consensus 30 nF~~~~--~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~ 71 (1050)
||++|. ...+++.+++|+|+|.|||||||+...|.-+-+|..
T Consensus 1 n~~~~~~~~~~~~~~~~~n~IYG~NGsGKStlsr~l~~~~~~~~ 44 (712)
T PF13166_consen 1 NYASFDNWDNELDEFKKINLIYGRNGSGKSTLSRILKSLCRGRG 44 (712)
T ss_pred CeeeecCCCccCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC
Confidence 788887 566777788999999999999999999988665543
No 88
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.41 E-value=0.01 Score=68.97 Aligned_cols=137 Identities=10% Similarity=0.110 Sum_probs=57.0
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHhhh--------hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 284 KKQEKAILDGDCKKLSSLINENSKRRMDFLEKVDQ--------GVQVQGKYKEMQELRRQEQSRQQRILKAREELAAAEL 355 (1050)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1050)
+...+...+..+..++..+..+..++..+...... .+++..........+..+..+..++.....++..+..
T Consensus 229 lq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt 308 (775)
T PF10174_consen 229 LQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQT 308 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555444433322 1122222222223333344444444444444444444
Q ss_pred HhhcCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHH
Q 001581 356 DLQTVPA-YEPPHDKIEKLGSQILELGVQANQKRLQKSEKEKILNQNKLTLRQCSDRLKDMEDKNN 420 (1050)
Q Consensus 356 ~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 420 (1050)
++..+.. ..+....+.-+...+...+.....+...++.+..++......+......+..++.+..
T Consensus 309 ~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~ 374 (775)
T PF10174_consen 309 RLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKS 374 (775)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443322 1122334444444444444444444444444444444444444444444444444333
No 89
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.40 E-value=5e-07 Score=92.19 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=62.9
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCe
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEAC 1014 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~~ 1014 (1050)
+..|||||+.+++||..+++..+.|.|+++|||++++||...+..+.+.|.+.+. .+.++|+|||.. .-+.+.+.+
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~--~g~~vi~isH~~-~~~~~~d~i 228 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG--PNFQFIVISLKE-EFFSKADAL 228 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc--CCcEEEEEECCH-HHHhhCCeE
Confidence 4569999999999999999866778889999999999999999999998887754 378999999983 223444544
No 90
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.38 E-value=2.8e-07 Score=82.73 Aligned_cols=39 Identities=33% Similarity=0.436 Sum_probs=33.3
Q ss_pred EEecCCceeEEEcCCCCChhHHHHHHHHHhcCCCccccc
Q 001581 38 ICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGR 76 (1050)
Q Consensus 38 ~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r 76 (1050)
.++|.+.||+|+|.||||||||+.||....|-.+...++
T Consensus 32 ~LeF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~ 70 (233)
T COG3910 32 RLEFRAPITFITGENGSGKSTLLEAIAAGMGFNAAGGGK 70 (233)
T ss_pred hccccCceEEEEcCCCccHHHHHHHHHhhccccccCCCc
Confidence 578888899999999999999999999998766654444
No 91
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.34 E-value=1e-06 Score=81.84 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=55.5
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+.+||||++.++|||=.||+. =...+|||++++|||.-+.-+.+.|.++|.. +.=.+++||..
T Consensus 134 P~qLSGGQqQRVAIARALaM~----P~vmLFDEPTSALDPElv~EVL~vm~~LA~e--GmTMivVTHEM 196 (240)
T COG1126 134 PAQLSGGQQQRVAIARALAMD----PKVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMIIVTHEM 196 (240)
T ss_pred ccccCcHHHHHHHHHHHHcCC----CCEEeecCCcccCCHHHHHHHHHHHHHHHHc--CCeEEEEechh
Confidence 456999999999999999863 2368999999999999999999999999974 67889999995
No 92
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.31 E-value=1.3e-06 Score=82.26 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=53.4
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
|||||+.++++|..++.. .|+++|||++++||..+...+.+.|.+.... +.++|++||+.
T Consensus 81 lS~G~~~r~~l~~~l~~~----~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~--~~tii~~sh~~ 140 (157)
T cd00267 81 LSGGQRQRVALARALLLN----PDLLLLDEPTSGLDPASRERLLELLRELAEE--GRTVIIVTHDP 140 (157)
T ss_pred CCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 999999999999999864 7999999999999999999999988877652 57899999984
No 93
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.31 E-value=1.3e-06 Score=89.62 Aligned_cols=65 Identities=18% Similarity=0.340 Sum_probs=57.9
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPK 1003 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~ 1003 (1050)
+..||||++.++++|..|+..-+.|.++++|||++++||+..+..+++.|.+... +.++|+|||.
T Consensus 164 ~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~---g~~ii~iSH~ 228 (251)
T cd03273 164 LTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK---GSQFIVVSLK 228 (251)
T ss_pred ccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC---CCEEEEEECC
Confidence 4569999999999999888665677889999999999999999999998887753 6899999999
No 94
>PRK00064 recF recombination protein F; Reviewed
Probab=98.30 E-value=2.7e-05 Score=83.90 Aligned_cols=155 Identities=15% Similarity=0.222 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcc-eEEEee--cC-C--
Q 001581 838 ILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVA-GEVSLD--EH-E-- 911 (1050)
Q Consensus 838 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~f~~~f~~l~~~-g~~~l~--~~-~-- 911 (1050)
+..+|.++..+...+.+... ...+..+...+..+-..+......++..++..|..+++.+..+ ..+.+. .. +
T Consensus 150 ~~~~y~k~lkqrn~lLk~~~--~~~l~~w~~~l~~~g~~I~~~R~~~~~~L~~~~~~~~~~l~~~~~~~~l~y~~~~~~~ 227 (361)
T PRK00064 150 ALSQYERALKQRNALLKQAD--YAWLDVWDEQLAELGAAIAAARLEYLERLAPLAAKTHQEISPEFELASLSYQSSVEDD 227 (361)
T ss_pred HHHHHHHHHHHHHHHhccCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCcc
Confidence 44444444444444433211 1135667777777777777778888888888888888887533 244444 11 0
Q ss_pred -Cc----c----------------cccc---eEEEEEecCCCCcccccccccCchhHHHHHHHHHHHhcc-----cCCCC
Q 001581 912 -SD----F----------------DKFG---ILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQD-----LTNCP 962 (1050)
Q Consensus 912 -~~----~----------------~~~~---l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lall~al~~-----~~~~P 962 (1050)
++ + ...| =+|.+..+ |.+ +. ..+|+||+..+++|+.+|-.. ..+.|
T Consensus 228 ~~~~~~~~~~~l~~~~~~d~~~g~T~~GpHrdDl~~~~~-g~~--~~--~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ 302 (361)
T PRK00064 228 AEKIEEDLLEALAKNRERDRARGRTLVGPHRDDLRFRIN-GLP--AA--DFGSTGQQKLLLLALKLAEAELLKEETGEAP 302 (361)
T ss_pred hhHHHHHHHHHHHHhHHHHHhcCCCCCCcchhceEEEEC-CCC--HH--HhCChHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 00 0 0012 12333333 321 22 349999999999999998432 46789
Q ss_pred ceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 963 FRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 963 f~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+++|||+.++||+.++..+++.|... ..|+|+.||+.
T Consensus 303 ilLlDd~~s~LD~~~~~~l~~~l~~~-----~~qv~it~~~~ 339 (361)
T PRK00064 303 ILLLDDVASELDDGRRAALLERLKGL-----GAQVFITTTDL 339 (361)
T ss_pred EEEEccchhhhCHHHHHHHHHHHhcc-----CCEEEEEcCCh
Confidence 99999999999999999988877532 45999998873
No 95
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.29 E-value=0.032 Score=69.55 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001581 324 GKYKEMQELRRQEQSRQQRILKAREELAAAELDL 357 (1050)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 357 (1050)
.+......++.++....-+++++...+.....++
T Consensus 388 k~ys~~~~~qqqle~~~lele~~~~~l~s~~eev 421 (1822)
T KOG4674|consen 388 KLYSKYSKLQQQLESLKLELERLQNILSSFKEEV 421 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444443333
No 96
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.27 E-value=2.4e-06 Score=80.60 Aligned_cols=65 Identities=25% Similarity=0.509 Sum_probs=58.0
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.+|||++.+++++..++...+.+.|++++||++.++|+.+...+...|.+.... ++++|++||..
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~--~~~vii~TH~~ 141 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK--GAQVIVITHLP 141 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEcCCH
Confidence 499999999999999997666788999999999999999999999988887653 68999999984
No 97
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.26 E-value=8.8e-07 Score=80.40 Aligned_cols=43 Identities=28% Similarity=0.518 Sum_probs=32.6
Q ss_pred EEEecc-cccc------eEEEecC-CceeEEEcCCCCChhHHHHHHHHHhc
Q 001581 26 IELHNF-MTFD------HLICKPG-SRLNLVIGPNGSGKSSLVCAIALALG 68 (1050)
Q Consensus 26 l~l~nF-~~~~------~~~i~f~-~~~~~I~G~NGsGKSti~~Ai~~~L~ 68 (1050)
|++.|. ++|. +.+++|+ .++|.|+||||+||||++..++-.+.
T Consensus 2 I~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~ 52 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK 52 (252)
T ss_pred eeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc
Confidence 345555 5665 3445554 67999999999999999999988774
No 98
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.25 E-value=3.4e-06 Score=87.56 Aligned_cols=81 Identities=20% Similarity=0.162 Sum_probs=63.5
Q ss_pred EEEEEecCCCCcccccccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEE
Q 001581 920 LIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFL 999 (1050)
Q Consensus 920 ~i~v~~~~~~~~~~~~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~ 999 (1050)
...+.+.++..... ....||||++.++++|+.+++..+.+.|++++||++++||+.....+.+.|.+.+. ..++|+
T Consensus 153 ~~~~~~~p~e~~~~-~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~---~~tii~ 228 (276)
T cd03241 153 EFLFSTNPGEPLKP-LAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR---SHQVLC 228 (276)
T ss_pred EEEeecCCCCccch-hhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC---CCEEEE
Confidence 33444444432222 23459999999999999887665678899999999999999999999999887754 689999
Q ss_pred EcCCC
Q 001581 1000 LTPKL 1004 (1050)
Q Consensus 1000 iTp~~ 1004 (1050)
+||+.
T Consensus 229 isH~~ 233 (276)
T cd03241 229 ITHLP 233 (276)
T ss_pred EechH
Confidence 99984
No 99
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.24 E-value=2.3e-06 Score=76.61 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=53.6
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPK 1003 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~ 1003 (1050)
+..||||||.++|||=-| +.+-|+..|||.+++||+.=+..+..++.+++. ....=+++|||+
T Consensus 127 P~~LSGGqRQRvALARcl----vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~-E~~~TllmVTH~ 189 (231)
T COG3840 127 PGELSGGQRQRVALARCL----VREQPILLLDEPFSALDPALRAEMLALVSQLCD-ERKMTLLMVTHH 189 (231)
T ss_pred ccccCchHHHHHHHHHHH----hccCCeEEecCchhhcCHHHHHHHHHHHHHHHH-hhCCEEEEEeCC
Confidence 457999999999998755 467899999999999999999998877776654 456779999999
No 100
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.23 E-value=2.6e-06 Score=87.32 Aligned_cols=84 Identities=19% Similarity=0.277 Sum_probs=64.7
Q ss_pred cccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCe
Q 001581 935 SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEAC 1014 (1050)
Q Consensus 935 ~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~~ 1014 (1050)
.+..+|||++.+++||..++++...|.|+++|||++++||+.....+.+.|.+... ++++|++||.. .-+.+.+.+
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~---~~~ii~~~h~~-~~~~~~d~i 230 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD---GAQFITTTFRP-ELLEVADKF 230 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC---CCEEEEEecCH-HHHhhCCEE
Confidence 34569999999999999998765677899999999999999999999998887654 67777777663 334555665
Q ss_pred EEEEEecC
Q 001581 1015 SILNIMNG 1022 (1050)
Q Consensus 1015 ~~~~~~~~ 1022 (1050)
-++.+-||
T Consensus 231 ~~l~~~~~ 238 (243)
T cd03272 231 YGVKFRNK 238 (243)
T ss_pred EEEEEECC
Confidence 55543343
No 101
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.23 E-value=2.6e-06 Score=83.62 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=56.1
Q ss_pred cccccCchhHHHHHHHHHHHhcc--cCCCCceEeeccccCCChHhHH-HHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 935 SAHHQSGGERSVSTILYLVSLQD--LTNCPFRVVDEINQGMDPINER-KMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 935 ~~~~lSGGErs~~~lall~al~~--~~~~Pf~vlDEid~~lD~~n~~-~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.+..|||||+.+++||+.+|+.. ..+.|+++|||++.+||+..+. .+.+.|.+... ....++|++||+.
T Consensus 112 ~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~-~~~~~iiiitH~~ 183 (204)
T cd03240 112 MRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKS-QKNFQLIVITHDE 183 (204)
T ss_pred CccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-ccCCEEEEEEecH
Confidence 34569999999998887766533 4677899999999999999999 98988877654 2257999999984
No 102
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.22 E-value=2.8e-06 Score=83.21 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=57.1
Q ss_pred cccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCC
Q 001581 935 SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEA 1013 (1050)
Q Consensus 935 ~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~ 1013 (1050)
.+..|||||++++.||-.|| .+..+++|||+++|+|+.....++++|.++..+ +.=+++|||.+-.-..|.|.
T Consensus 136 ~i~~LSGGQ~QRV~lARAL~----~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~ 208 (254)
T COG1121 136 QIGELSGGQKQRVLLARALA----QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDR 208 (254)
T ss_pred cccccCcHHHHHHHHHHHhc----cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCE
Confidence 45779999999999998776 346689999999999999999999999888763 66677777775322344444
No 103
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.20 E-value=0.017 Score=63.15 Aligned_cols=15 Identities=13% Similarity=-0.188 Sum_probs=8.5
Q ss_pred CCCCceEeeccccCC
Q 001581 959 TNCPFRVVDEINQGM 973 (1050)
Q Consensus 959 ~~~Pf~vlDEid~~l 973 (1050)
.|-|-|-|||=+.+.
T Consensus 498 ~~l~~~~l~~~~~~~ 512 (546)
T PF07888_consen 498 QPLGHYSLCEQGQPG 512 (546)
T ss_pred CCCCCcCcccCCCCC
Confidence 344446777665554
No 104
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.5e-06 Score=89.46 Aligned_cols=78 Identities=31% Similarity=0.502 Sum_probs=61.0
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeEEE
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSIL 1017 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~~~~~ 1017 (1050)
.|||||+.++|||=++= ..+|..+|||++.|||+.+++.++..|.+.+. +.=+|+|||++ .++...| +|+
T Consensus 474 ~LSGGE~rRLAlAR~LL----~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~---~kTll~vTHrL-~~le~~d--rIi 543 (573)
T COG4987 474 RLSGGERRRLALARALL----HDAPLWLLDEPTEGLDPITERQVLALLFEHAE---GKTLLMVTHRL-RGLERMD--RII 543 (573)
T ss_pred cCCchHHHHHHHHHHHH----cCCCeEEecCCcccCChhhHHHHHHHHHHHhc---CCeEEEEeccc-ccHhhcC--EEE
Confidence 38999999999987552 37999999999999999999999999988776 77799999997 3444333 344
Q ss_pred EEecCCCC
Q 001581 1018 NIMNGPWI 1025 (1050)
Q Consensus 1018 ~~~~~~~~ 1025 (1050)
++-||--+
T Consensus 544 vl~~Gkii 551 (573)
T COG4987 544 VLDNGKII 551 (573)
T ss_pred EEECCeee
Confidence 33466433
No 105
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.19 E-value=3.2e-06 Score=83.35 Aligned_cols=79 Identities=19% Similarity=0.301 Sum_probs=63.6
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeE
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACS 1015 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~~~ 1015 (1050)
+..+|||++.++++|..+++..+.|.|+.+|||++++||+..+..+.+.|.+.+. ..++|+|||.. .-..+.+.+-
T Consensus 125 ~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~---~~~~iivs~~~-~~~~~~d~v~ 200 (212)
T cd03274 125 ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK---NAQFIVISLRN-NMFELADRLV 200 (212)
T ss_pred hhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC---CCEEEEEECcH-HHHHhCCEEE
Confidence 4569999999999999998766678889999999999999999999998887654 68999999873 1123455555
Q ss_pred EEE
Q 001581 1016 ILN 1018 (1050)
Q Consensus 1016 ~~~ 1018 (1050)
+++
T Consensus 201 ~~~ 203 (212)
T cd03274 201 GIY 203 (212)
T ss_pred EEE
Confidence 554
No 106
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.19 E-value=2.5e-06 Score=70.21 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=40.1
Q ss_pred cccccCchhH-HHHHHHHHHHhcc---c----CC-CCceEeeccccCCChHhHHHHHHHHH
Q 001581 935 SAHHQSGGER-SVSTILYLVSLQD---L----TN-CPFRVVDEINQGMDPINERKMFQQLV 986 (1050)
Q Consensus 935 ~~~~lSGGEr-s~~~lall~al~~---~----~~-~Pf~vlDEid~~lD~~n~~~~~~~l~ 986 (1050)
....+||||+ ..++++|.+|+.. . .+ ..+.+|||.+.+||+.|...++.+|.
T Consensus 29 ~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~ 89 (90)
T PF13558_consen 29 SFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLR 89 (90)
T ss_dssp EGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHH
T ss_pred cCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHh
Confidence 5567999999 7888888887532 1 12 33789999999999999999998775
No 107
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.18 E-value=1.7e-06 Score=85.34 Aligned_cols=66 Identities=20% Similarity=0.361 Sum_probs=55.3
Q ss_pred ccccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 934 LSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 934 ~~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..+..||||||.++|||=.+|+. .-++||||.+++||+.+++.+++.|.++... .+.=+|++||+.
T Consensus 134 r~p~~LSGGqkqRvaIA~vLa~~----P~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~ 199 (235)
T COG1122 134 RPPFNLSGGQKQRVAIAGVLAMG----PEILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDL 199 (235)
T ss_pred CCccccCCcceeeHHhhHHHHcC----CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcH
Confidence 35677999999999999999975 3389999999999999999999999887651 223488899984
No 108
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.17 E-value=0.014 Score=63.92 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 001581 855 KQEADKKELKRFLAEIDALKEK 876 (1050)
Q Consensus 855 ~~~~l~~~~~~l~~~i~~l~~~ 876 (1050)
....+......|...|..++.+
T Consensus 432 EKEql~~EkQeL~~yi~~Le~r 453 (546)
T PF07888_consen 432 EKEQLQEEKQELLEYIERLEQR 453 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 109
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.17 E-value=0.018 Score=64.81 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 754 LEFNLKQHEKLALQASLHYEDCKKEVEHCRKHLSDAKRQA 793 (1050)
Q Consensus 754 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 793 (1050)
+..+++....++.++....+.+..+++.++..+..+++++
T Consensus 401 ~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 401 LQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555555544
No 110
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.16 E-value=0.019 Score=64.65 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 001581 622 LRSKKKKLEESVDEL 636 (1050)
Q Consensus 622 l~~~~~~l~~~~~~l 636 (1050)
|..++..+.+++..+
T Consensus 229 Lr~QvrdLtEkLetl 243 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETL 243 (1243)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 111
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=4.7e-06 Score=78.35 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=60.5
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC-CCeEEE
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYS-EACSIL 1017 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~-~~~~~~ 1017 (1050)
+|||||-+.=++=++.| .| -|+||||+|+|||-...+.+.+.+..+.. .++=+++|||.. .=+.|. |+ .||
T Consensus 145 FSGGEkKR~EilQ~~~l---eP-kl~ILDE~DSGLDIdalk~V~~~i~~lr~--~~~~~liITHy~-rll~~i~pD-~vh 216 (251)
T COG0396 145 FSGGEKKRNEILQLLLL---EP-KLAILDEPDSGLDIDALKIVAEGINALRE--EGRGVLIITHYQ-RLLDYIKPD-KVH 216 (251)
T ss_pred cCcchHHHHHHHHHHhc---CC-CEEEecCCCcCccHHHHHHHHHHHHHHhc--CCCeEEEEecHH-HHHhhcCCC-EEE
Confidence 89999999988877765 22 28999999999999999999888877765 488999999983 002333 33 566
Q ss_pred EEecCCCCC
Q 001581 1018 NIMNGPWIE 1026 (1050)
Q Consensus 1018 ~~~~~~~~~ 1026 (1050)
..|+|.=+.
T Consensus 217 vl~~GrIv~ 225 (251)
T COG0396 217 VLYDGRIVK 225 (251)
T ss_pred EEECCEEEe
Confidence 567876444
No 112
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.16 E-value=4.1e-06 Score=82.60 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=57.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSE 1012 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~ 1012 (1050)
..|||||+.++++|..|+. +.|+++|||++.+||+..+..+.+.|.+... .+.-+|++||+.+.-..+..
T Consensus 124 ~~LS~G~~qrl~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiii~sH~~~~~~~~~~ 193 (201)
T cd03231 124 AQLSAGQQRRVALARLLLS----GRPLWILDEPTTALDKAGVARFAEAMAGHCA--RGGMVVLTTHQDLGLSEAGA 193 (201)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCchhhhhccc
Confidence 4599999999999988874 4689999999999999999999998887654 25679999998755444433
No 113
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.15 E-value=4.3e-06 Score=83.65 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=53.9
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..|+. +.|+++|||++++||+.++..+.+.|.+.+. .+.-+|++||+.
T Consensus 131 ~~LSgG~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sH~~ 192 (213)
T cd03235 131 GELSGGQQQRVLLARALVQ----DPDLLLLDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDL 192 (213)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCH
Confidence 4599999999999998874 5789999999999999999999999988764 256799999984
No 114
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.15 E-value=9e-07 Score=80.18 Aligned_cols=40 Identities=30% Similarity=0.600 Sum_probs=30.0
Q ss_pred EEEEecccccceEEEecCCc-eeEEEcCCCCChhHHHHHHH
Q 001581 25 EIELHNFMTFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIA 64 (1050)
Q Consensus 25 ~l~l~nF~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~ 64 (1050)
++..-||+...+.++...|| +.+|+||||+||||+||+|+
T Consensus 12 sVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~It 52 (249)
T COG4674 12 SVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVIT 52 (249)
T ss_pred EEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeec
Confidence 34445555555666555443 99999999999999999996
No 115
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.14 E-value=4.6e-06 Score=80.38 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=53.5
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..|||||+.++|+|=.++ ..|. ..+.||++.+||..+...++++|.+... ..+.=+|++||..
T Consensus 140 p~eLSGGqqQRVAIARAL~---~~P~-iilADEPTgnLD~~t~~~V~~ll~~~~~-~~g~tii~VTHd~ 203 (226)
T COG1136 140 PSELSGGQQQRVAIARALI---NNPK-IILADEPTGNLDSKTAKEVLELLRELNK-ERGKTIIMVTHDP 203 (226)
T ss_pred chhcCHHHHHHHHHHHHHh---cCCC-eEEeeCccccCChHHHHHHHHHHHHHHH-hcCCEEEEEcCCH
Confidence 5679999999999999877 3343 5688999999999999999999998865 2356799999994
No 116
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=4.8e-06 Score=90.00 Aligned_cols=59 Identities=22% Similarity=0.337 Sum_probs=54.1
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
|||||+.+++||=.| .+|+|+++|||+++++|..++..+.+.|.+.++ ..=+|+|||++
T Consensus 457 LSgGQ~QRlaLARAl----l~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~---~ktvl~itHrl 515 (559)
T COG4988 457 LSGGQAQRLALARAL----LSPASLLLLDEPTAHLDAETEQIILQALQELAK---QKTVLVITHRL 515 (559)
T ss_pred CCHHHHHHHHHHHHh----cCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh---CCeEEEEEcCh
Confidence 899999999998755 467999999999999999999999999999987 67899999996
No 117
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.13 E-value=4.5e-06 Score=81.68 Aligned_cols=62 Identities=26% Similarity=0.362 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||..++..+.+.|.+... .+.-+|++||..
T Consensus 126 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~~~~~l~~~~~--~~~tili~sH~~ 187 (190)
T TIGR01166 126 HCLSGGEKKRVAIAGAVAM----RPDVLLLDEPTAGLDPAGREQMLAILRRLRA--EGMTVVISTHDV 187 (190)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--cCCEEEEEeecc
Confidence 3599999999999988763 5689999999999999999999999988764 267899999974
No 118
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.12 E-value=5e-06 Score=83.05 Aligned_cols=62 Identities=21% Similarity=0.410 Sum_probs=53.3
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+.+.. +.-+|++||+.
T Consensus 133 ~~LSgG~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tvi~~sH~~ 194 (211)
T cd03225 133 FTLSGGQKQRVAIAGVLAM----DPDILLLDEPTAGLDPAGRRELLELLKKLKAE--GKTIIIVTHDL 194 (211)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCH
Confidence 3599999999999987763 46899999999999999999999999887652 56799999984
No 119
>PRK14079 recF recombination protein F; Provisional
Probab=98.12 E-value=0.00025 Score=76.00 Aligned_cols=129 Identities=15% Similarity=0.279 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcceEEEee-cCC--Cc-c----------------cccc---e
Q 001581 863 LKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLD-EHE--SD-F----------------DKFG---I 919 (1050)
Q Consensus 863 ~~~l~~~i~~l~~~~~~~~~~~~~~i~~~f~~~f~~l~~~g~~~l~-~~~--~~-~----------------~~~~---l 919 (1050)
+..+...+..+-..+.......+..++..|..++..++++..+.+. ... .+ + ...| =
T Consensus 170 l~~w~~~l~~~g~~i~~~R~~~~~~l~~~~~~~~~~l~~~~~l~l~y~~~~~~~~~~~~l~~~~~~d~~~g~T~~GpHRd 249 (349)
T PRK14079 170 LHVWDDELVKLGDEIMALRRRALTRLSELAREAYAELGSRKPLRLELSESTAPEGYLAALEARRAEELARGATVVGPHRD 249 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEEEecCcCHHHHHHHHHHhhHHHHHcCCCCCCCchh
Confidence 5566667777777777777788888888888888888433355554 111 00 0 0012 1
Q ss_pred EEEEEecCCCCcccccccccCchhHHHHHHHHHHH----hcc-cCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCC
Q 001581 920 LIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVS----LQD-LTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNT 994 (1050)
Q Consensus 920 ~i~v~~~~~~~~~~~~~~~lSGGErs~~~lall~a----l~~-~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~ 994 (1050)
+|.+..+ |.+.. .-+|+||+-.+++++.|| +.. ....|+++|||+.++||..++..+++.|.. .
T Consensus 250 D~~~~~~-g~~~~----~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~------~ 318 (349)
T PRK14079 250 DLVLTLE-GRPAH----RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAAS------L 318 (349)
T ss_pred ceEEEEC-CEehH----HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhc------C
Confidence 2333332 33221 228999999999999998 332 356899999999999999999998877742 3
Q ss_pred CeEEEEcC
Q 001581 995 PQCFLLTP 1002 (1050)
Q Consensus 995 ~Q~i~iTp 1002 (1050)
.|+|+.|.
T Consensus 319 ~q~~it~t 326 (349)
T PRK14079 319 PQAIVAGT 326 (349)
T ss_pred CcEEEEcC
Confidence 48765544
No 120
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.10 E-value=4.5e-06 Score=83.48 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+.+. ..+.-+|++||..
T Consensus 129 ~~LSgG~~qrl~la~al~~----~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~ 191 (213)
T cd03259 129 HELSGGQQQRVALARALAR----EPSLLLLDEPLSALDAKLREELREELKELQR-ELGITTIYVTHDQ 191 (213)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEecCH
Confidence 3599999999999988874 4689999999999999999999999988754 1256799999985
No 121
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.10 E-value=5.9e-06 Score=83.62 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+.+. ..-+|++||+.
T Consensus 140 ~~LSgG~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~ 200 (227)
T cd03260 140 LGLSGGQQQRLCLARALAN----EPEVLLLDEPTSALDPISTAKIEELIAELKK---EYTIVIVTHNM 200 (227)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhh---CcEEEEEeccH
Confidence 4599999999999987774 4689999999999999999999999988765 26799999984
No 122
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.09 E-value=0.091 Score=67.31 Aligned_cols=79 Identities=19% Similarity=0.131 Sum_probs=62.2
Q ss_pred ceEEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhc-CCCc------ccccccchhhhhhcCC-----
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALG-GDTQ------LLGRATSIGAYVKRGE----- 88 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~-g~~~------~~~r~~~~~~~i~~g~----- 88 (1050)
.++.++-|.||-.|.+.+|+|++|+|+|+||||||||||||||.|+|+ |... ...++.++.++++.|.
T Consensus 2 w~~~R~gliN~~~~~~~~~~f~~g~~~~~G~NGsGKS~~lda~~~~ll~~~~~~~rln~~~~~~r~~~~~l~~g~~~~~~ 81 (1353)
T TIGR02680 2 WRPHRAGLVNLWYYDEQEFWFRDGRLLLRGNNGAGKSKVLELLLPFLLDGKLRPSRLEPDGDSRKRMAWNLLLGGVNHDE 81 (1353)
T ss_pred ceeeeEEEEEeccccceEEecCCCeEEEECCCCCcHHHHHHHHHHHHhcCCCCccccCCCCCccccHHHHHcCCCCCCCC
Confidence 357899999999999999999999999999999999999999776664 4221 1346668999998775
Q ss_pred ceeEEEEEEEe
Q 001581 89 ESGYIKISLRG 99 (1050)
Q Consensus 89 ~~a~v~i~~~~ 99 (1050)
..+++.|+|..
T Consensus 82 ~~~y~~~e~~~ 92 (1353)
T TIGR02680 82 RVGYLWLEFGR 92 (1353)
T ss_pred cceeEEEEeec
Confidence 23555555554
No 123
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.09 E-value=5.4e-06 Score=82.53 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+..+..+.++|.+... .+.-+|++||+.
T Consensus 125 ~~LS~G~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~ 186 (208)
T cd03268 125 KGFSLGMKQRLGIALALLG----NPDLLILDEPTNGLDPDGIKELRELILSLRD--QGITVLISSHLL 186 (208)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCH
Confidence 4599999999999988874 4689999999999999999999998887764 257899999984
No 124
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=7.1e-06 Score=78.61 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=53.4
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
|||||+.++++|..++. +.|++++||++++||..+...+.+.|.+.+.+ ++.+|++||+.
T Consensus 96 LS~G~~qrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiii~th~~ 155 (173)
T cd03230 96 LSGGMKQRLALAQALLH----DPELLILDEPTSGLDPESRREFWELLRELKKE--GKTILLSSHIL 155 (173)
T ss_pred cCHHHHHHHHHHHHHHc----CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEECCCH
Confidence 89999999999998884 46899999999999999999999999888652 57899999984
No 125
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=5.9e-06 Score=83.07 Aligned_cols=63 Identities=17% Similarity=0.302 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+... ..+.-+|++||+.
T Consensus 130 ~~LSgG~~qrl~la~al~~----~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sH~~ 192 (220)
T cd03293 130 HQLSGGMRQRVALARALAV----DPDVLLLDEPFSALDALTREQLQEELLDIWR-ETGKTVLLVTHDI 192 (220)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-HcCCEEEEEecCH
Confidence 3599999999999998875 4689999999999999999999999987643 1256789999985
No 126
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.08 E-value=6.4e-06 Score=82.18 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.++++|..|+. +.|+++|||++++||+.++..+.+.|.+.+. .+.-+|++||+.
T Consensus 127 ~~LS~G~~qrl~la~al~~----~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~--~~~tii~~sH~~ 188 (210)
T cd03269 127 EELSKGNQQKVQFIAAVIH----DPELLILDEPFSGLDPVNVELLKDVIRELAR--AGKTVILSTHQM 188 (210)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEECCCH
Confidence 4499999999999988874 4689999999999999999999998887764 256789999984
No 127
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.08 E-value=6.4e-06 Score=82.58 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. +.++++|||++++||..++..+.+.|.+... .+.-+|++||+.
T Consensus 137 ~~LSgG~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~vsH~~ 198 (216)
T TIGR00960 137 MQLSGGEQQRVAIARAIVH----KPPLLLADEPTGNLDPELSRDIMRLFEEFNR--RGTTVLVATHDI 198 (216)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 3599999999999998874 4689999999999999999999998887754 256799999984
No 128
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.08 E-value=0.048 Score=63.57 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhcccccchHhhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHhhh-hHhHHHHHHHHHHHHHHHHHHH
Q 001581 262 DAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENSKRRMDFLEKVDQ-GVQVQGKYKEMQELRRQEQSRQ 340 (1050)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 340 (1050)
.+...+..++.++ .....+..+...+.........+.. ++.....+..+...... ..++..+...++.++..+..++
T Consensus 71 ~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q 148 (775)
T PF10174_consen 71 KAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQ 148 (775)
T ss_pred HHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344433 3333333333333333333333333 33333344444444444 4455555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHh
Q 001581 341 QRILKAREELAAAELDL 357 (1050)
Q Consensus 341 ~~~~~~~~~~~~~~~~l 357 (1050)
..+......+..+...+
T Consensus 149 ~~l~~~~eei~kL~e~L 165 (775)
T PF10174_consen 149 QTLDKADEEIEKLQEML 165 (775)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555554
No 129
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.07 E-value=7.5e-07 Score=106.20 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001581 626 KKKLEESVDELEESLKSMQT 645 (1050)
Q Consensus 626 ~~~l~~~~~~l~~~l~~l~~ 645 (1050)
...++.++..+...+.++..
T Consensus 463 kr~LE~e~~El~~~leE~E~ 482 (859)
T PF01576_consen 463 KRRLEQEKEELQEQLEEAED 482 (859)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 130
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.07 E-value=6.5e-06 Score=83.47 Aligned_cols=63 Identities=21% Similarity=0.215 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||..++..+.+.|.+.+.. .+.-+|++||..
T Consensus 114 ~~LSgGe~qrv~iaraL~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsHd~ 176 (246)
T cd03237 114 PELSGGELQRVAIAACLSK----DADIYLLDEPSAYLDVEQRLMASKVIRRFAEN-NEKTAFVVEHDI 176 (246)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 4599999999999997774 46899999999999999999999988887542 246789999984
No 131
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.07 E-value=7e-06 Score=82.23 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+... .+.-+|++||+.
T Consensus 136 ~~LS~G~~qrl~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~ 197 (214)
T TIGR02673 136 EQLSGGEQQRVAIARAIVN----SPPLLLADEPTGNLDPDLSERILDLLKRLNK--RGTTVIVATHDL 197 (214)
T ss_pred hhCCHHHHHHHHHHHHHhC----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCH
Confidence 3599999999999998873 4589999999999999999999999988754 256799999984
No 132
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.011 Score=65.31 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=48.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 320 VQVQGKYKEMQELRRQEQSRQQRILKAREELAAAELDLQTVPA-YEPPHDKIEKLGSQILELGVQANQKRLQKSEKEKIL 398 (1050)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 398 (1050)
..+.....++..+..++.+.+..+..+--+-..+..++..... ...-..+...+......-+.-+..++.++.++..+.
T Consensus 479 ~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~ 558 (1118)
T KOG1029|consen 479 KQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKET 558 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444443332 111122233344443333444445555666666666
Q ss_pred HHhHHHHHHHHHHHHHhhhHHHHH
Q 001581 399 NQNKLTLRQCSDRLKDMEDKNNKL 422 (1050)
Q Consensus 399 ~~~~~~~~~~~~~l~~l~~~~~~~ 422 (1050)
...-.+++....+++++...+...
T Consensus 559 esk~~eidi~n~qlkelk~~~~~q 582 (1118)
T KOG1029|consen 559 ESKLNEIDIFNNQLKELKEDVNSQ 582 (1118)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHH
Confidence 665556666666666655555443
No 133
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.06 E-value=7.4e-06 Score=78.92 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=52.7
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
|||||+.+++||..++. +.|+++|||++++||..++..+.+.|.+.+. ..++-+|++||..
T Consensus 101 lS~G~~qr~~la~al~~----~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~ 161 (178)
T cd03229 101 LSGGQQQRVALARALAM----DPDVLLLDEPTSALDPITRREVRALLKSLQA-QLGITVVLVTHDL 161 (178)
T ss_pred CCHHHHHHHHHHHHHHC----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 99999999999988875 4689999999999999999999998988765 1247899999984
No 134
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.06 E-value=7.2e-06 Score=82.65 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.++++|..|+. +.|+++|||++++||+.++..+.+.|.+.+. ..+.-+|++||+.
T Consensus 140 ~~LS~G~~qrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~tH~~ 202 (221)
T TIGR02211 140 SELSGGERQRVAIARALVN----QPSLVLADEPTGNLDNNNAKIIFDLMLELNR-ELNTSFLVVTHDL 202 (221)
T ss_pred hhCCHHHHHHHHHHHHHhC----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4599999999999998874 4689999999999999999999998887754 1246789999884
No 135
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.06 E-value=2.9e-05 Score=92.32 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001581 812 TTIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINET 891 (1050)
Q Consensus 812 ~~~~~l~~~i~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~ 891 (1050)
.+++.|+.+...+...+..+...+.....-. ...-+.....++.+++..+..+...+.++...|.....++.+.|..-
T Consensus 566 ~~l~~L~~En~~L~~~l~~le~~~~~~~~~~--p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~l 643 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLEEGNSQPVDAV--PTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSL 643 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcccc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777765543222111000 01122333345566666666667777777766666655555554443
Q ss_pred HHHHHhcCCcceEEEee
Q 001581 892 FSRNFQEMAVAGEVSLD 908 (1050)
Q Consensus 892 f~~~f~~l~~~g~~~l~ 908 (1050)
|+.-. .+.++|.++|.
T Consensus 644 lGyki-~~~~~~~~rl~ 659 (722)
T PF05557_consen 644 LGYKI-DFMPNGRVRLT 659 (722)
T ss_dssp HSEEE-EEETTTEEEEE
T ss_pred hccee-eecCCCeEEEE
Confidence 32211 13577888887
No 136
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.06 E-value=7.2e-06 Score=83.79 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..|+. +.|+++|||++++||..++..+.+.|.+.... .+.-+|++||+.
T Consensus 132 ~~LSgGqkqrl~laraL~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tviivsHd~ 194 (257)
T PRK11247 132 AALSGGQKQRVALARALIH----RPGLLLLDEPLGALDALTRIEMQDLIESLWQQ-HGFTVLLVTHDV 194 (257)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 4599999999999998874 46899999999999999999999988876531 256799999984
No 137
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.06 E-value=8.7e-06 Score=78.61 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=53.7
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..|||||+.+++||..|+. +.|+++|||++.+||..++..+.+.|.+... ..+.-+|++||+.
T Consensus 95 ~~~LS~G~~qrl~laral~~----~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~ 158 (180)
T cd03214 95 FNELSGGERQRVLLARALAQ----EPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDL 158 (180)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 45699999999999987774 4689999999999999999999998887654 1256889999884
No 138
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.05 E-value=8.4e-06 Score=81.84 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++.+||+..+..+.+.|.+.+.. ...+|++||+.
T Consensus 141 ~~LSgG~~qrv~laral~~----~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~--~~tiii~sH~~ 202 (224)
T cd03220 141 KTYSSGMKARLAFAIATAL----EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ--GKTVILVSHDP 202 (224)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence 4599999999999887764 46899999999999999999999998877642 57899999984
No 139
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.05 E-value=0.017 Score=57.41 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 838 ILQEYEHRQRQIEDLSTKQEADKKEL 863 (1050)
Q Consensus 838 ~~~~~~~~~~~~~~l~~~~~~l~~~~ 863 (1050)
..+++..+..++.++...+..|....
T Consensus 226 ~~ee~~~~~~elre~~k~ik~l~~~~ 251 (294)
T COG1340 226 LHEEFRNLQNELRELEKKIKALRAKE 251 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554444443
No 140
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.05 E-value=5.3e-06 Score=81.79 Aligned_cols=26 Identities=42% Similarity=0.666 Sum_probs=23.3
Q ss_pred CceeEEEcCCCCChhHHHHHHHHHhc
Q 001581 43 SRLNLVIGPNGSGKSSLVCAIALALG 68 (1050)
Q Consensus 43 ~~~~~I~G~NGsGKSti~~Ai~~~L~ 68 (1050)
..+++|+|||||||||++.+|.-.|-
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46999999999999999999988774
No 141
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=7.9e-06 Score=82.92 Aligned_cols=63 Identities=25% Similarity=0.276 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++++||+.++..+.+.|.+... ..+.-+|++||+.
T Consensus 144 ~~LSgG~~qrl~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tvii~sH~~ 206 (233)
T PRK11629 144 SELSGGERQRVAIARALVN----NPRLVLADEPTGNLDARNADSIFQLLGELNR-LQGTAFLVVTHDL 206 (233)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCH
Confidence 3499999999999988874 4589999999999999999999998887753 1257899999985
No 142
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.04 E-value=9.8e-06 Score=80.42 Aligned_cols=62 Identities=18% Similarity=0.197 Sum_probs=52.7
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||+..+..+.+.|.+.+. .+.-+|++||+.
T Consensus 125 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sH~~ 186 (205)
T cd03226 125 LSLSGGQKQRLAIAAALLS----GKDLLIFDEPTSGLDYKNMERVGELIRELAA--QGKAVIVITHDY 186 (205)
T ss_pred hhCCHHHHHHHHHHHHHHh----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 3599999999999988774 4679999999999999999999998888754 256789999884
No 143
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.04 E-value=8e-06 Score=82.49 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||+.++..+.+.|.+.+.. .+.-+|++||+.
T Consensus 113 ~~LSgG~~qrv~la~al~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~ 175 (230)
T TIGR01184 113 GQLSGGMKQRVAIARALSI----RPKVLLLDEPFGALDALTRGNLQEELMQIWEE-HRVTVLMVTHDV 175 (230)
T ss_pred hhCCHHHHHHHHHHHHHHc----CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 4599999999999988874 46899999999999999999999999887541 245789999984
No 144
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.04 E-value=7.5e-06 Score=78.05 Aligned_cols=65 Identities=17% Similarity=0.263 Sum_probs=55.0
Q ss_pred cccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 935 SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 935 ~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.+++|||||++++|+|=.+++- -.+.|+||+.++||..+-..+.++|.++.. ..+.=||||||..
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~----PklLIlDEptSaLD~siQa~IlnlL~~l~~-~~~lt~l~IsHdl 202 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPE----PKLLILDEPTSALDVSVQAQILNLLLELKK-ERGLTYLFISHDL 202 (252)
T ss_pred CchhcChhHHHHHHHHHHhccC----CCEEEecCchhhhcHHHHHHHHHHHHHHHH-hcCceEEEEeCcH
Confidence 3577999999999999877742 348999999999999999999999988765 3456799999994
No 145
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=4.1e-06 Score=80.26 Aligned_cols=46 Identities=33% Similarity=0.506 Sum_probs=42.9
Q ss_pred EEEEEEecccccceEEEecCCceeEEEcCCCCChhHHHHHHHHHhcC
Q 001581 23 IIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGG 69 (1050)
Q Consensus 23 i~~l~l~nF~~~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L~g 69 (1050)
|.+++|.||+||.+..|.+.| +|+++|||-|||||.+.+|...+.|
T Consensus 2 i~sl~l~nfk~y~n~~i~l~~-ltVF~G~NssGKSt~iqsl~li~s~ 47 (374)
T COG4938 2 ILSLSLKNFKPYINGKIILKP-LTVFIGPNSSGKSTTIQSLYLIYSG 47 (374)
T ss_pred cceeeecCccceecceEEEec-ceEEEcCCCCchhHHHHHHHHHHHh
Confidence 679999999999999998886 9999999999999999999988876
No 146
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.03 E-value=6.8e-06 Score=82.37 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=56.2
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+++||||.|.++++|..+|+- -.+.|.||++.+||..+-..++++|.++.. ..++=+|||||++
T Consensus 151 PhelSGGMrQRV~IAmala~~----P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl 214 (316)
T COG0444 151 PHELSGGMRQRVMIAMALALN----PKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDL 214 (316)
T ss_pred CcccCCcHHHHHHHHHHHhCC----CCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 567999999999999998852 237899999999999999999999998876 4688999999995
No 147
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=1e-05 Score=78.94 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=53.1
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.|||||+.+++||-.++. +.|++++||++++||..+...+.+.|.+.+. .+.-+|++||..
T Consensus 108 ~LSgGe~qrv~la~al~~----~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiiivtH~~ 168 (192)
T cd03232 108 GLSVEQRKRLTIGVELAA----KPSILFLDEPTSGLDSQAAYNIVRFLKKLAD--SGQAILCTIHQP 168 (192)
T ss_pred cCCHHHhHHHHHHHHHhc----CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH--cCCEEEEEEcCC
Confidence 699999999999987774 4689999999999999999999998888764 267899999984
No 148
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.03 E-value=9.5e-06 Score=81.69 Aligned_cols=61 Identities=18% Similarity=0.301 Sum_probs=52.8
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||+.+...+.+.|.+.+. ..-+|++||+.
T Consensus 132 ~~LS~G~~qrv~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~ 192 (220)
T cd03263 132 RTLSGGMKRKLSLAIALIG----GPSVLLLDEPTSGLDPASRRAIWDLILEVRK---GRSIILTTHSM 192 (220)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEECCCCCCCCHHHHHHHHHHHHHHhc---CCEEEEEcCCH
Confidence 3599999999999988873 5689999999999999999999999988764 46788899884
No 149
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.02 E-value=1e-05 Score=81.54 Aligned_cols=77 Identities=19% Similarity=0.284 Sum_probs=59.3
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeEE
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSI 1016 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~~~~ 1016 (1050)
..|||||+.+++||..++. +.|+++|||++++||+.++..+.+.|.+.+. ..-+|++||+.- -+.+.+ ++
T Consensus 139 ~~LSgG~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~~-~~~~~d--~v 208 (220)
T cd03245 139 RGLSGGQRQAVALARALLN----DPPILLLDEPTSAMDMNSEERLKERLRQLLG---DKTLIIITHRPS-LLDLVD--RI 208 (220)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHhcC---CCEEEEEeCCHH-HHHhCC--EE
Confidence 4599999999999998874 4689999999999999999999999988764 367999999852 233333 34
Q ss_pred EEEecCC
Q 001581 1017 LNIMNGP 1023 (1050)
Q Consensus 1017 ~~~~~~~ 1023 (1050)
+.+.+|.
T Consensus 209 ~~l~~g~ 215 (220)
T cd03245 209 IVMDSGR 215 (220)
T ss_pred EEEeCCe
Confidence 4334553
No 150
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.02 E-value=9.8e-06 Score=80.92 Aligned_cols=63 Identities=21% Similarity=0.327 Sum_probs=53.9
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||..+...+.+.|.+... ..++.+|++||+.
T Consensus 127 ~~LS~G~~qrl~laral~~----~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tii~vsh~~ 189 (213)
T TIGR01277 127 EQLSGGQRQRVALARCLVR----PNPILLLDEPFSALDPLLREEMLALVKQLCS-ERQRTLLMVTHHL 189 (213)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 3599999999999998874 4689999999999999999999999988754 2367899999984
No 151
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.02 E-value=0.0072 Score=69.75 Aligned_cols=192 Identities=12% Similarity=0.071 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhhcchhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHhhHHHHHHhHHhhHHHHHHHHHHHH
Q 001581 227 RAELLEKVESMKKKLPWLKYDMKKAEYIAAKEQEKDAKKKLDEAANTLHEFSKPIEGKKQEKAILDGDCKKLSSLINENS 306 (1050)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (1050)
..++..-++.+...-..+.......++..++.++......+..+ ++......+..+...+..+-..+..-........
T Consensus 232 l~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~ve 309 (569)
T PRK04778 232 LQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVE 309 (569)
T ss_pred HHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666555555555666666666666655544433 2223333333333333333333333222233333
Q ss_pred HHHHHHHHHhhh-hHhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHH
Q 001581 307 KRRMDFLEKVDQ-GVQVQGKYKEMQELRRQ----------EQSRQQRILKAREELAAAELDLQTVPAYEPPHDKIEKLGS 375 (1050)
Q Consensus 307 ~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 375 (1050)
.....+...+.. ......+..++..+... ...+..++..+...+..+...+..... ....+..
T Consensus 310 k~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~------~ysel~e 383 (569)
T PRK04778 310 KNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEI------AYSELQE 383 (569)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CHHHHHH
Confidence 333334444444 44455555555555444 445555555555555555554443322 2344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001581 376 QILELGVQANQKRLQKSEKEKILNQNKLTLRQCSDRLKDMEDKNNKLLHAL 426 (1050)
Q Consensus 376 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 426 (1050)
.+..+..++..+..+...+...+..+......++..+..+...+......+
T Consensus 384 ~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l 434 (569)
T PRK04778 384 ELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYL 434 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444555555555555555555555554444443333
No 152
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.01 E-value=1.1e-05 Score=80.60 Aligned_cols=61 Identities=23% Similarity=0.220 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||..+...+.++|.+.+. ..-+|++||+.
T Consensus 129 ~~LS~G~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~vsH~~ 189 (211)
T cd03264 129 GSLSGGMRRRVGIAQALVG----DPSILIVDEPTAGLDPEERIRFRNLLSELGE---DRIVILSTHIV 189 (211)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEcCCH
Confidence 3599999999999988873 5689999999999999999999999988765 46799999884
No 153
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.01 E-value=1.1e-05 Score=82.93 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||+.++..+.+.|.+... +..+|++||+.
T Consensus 145 ~~LS~G~~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivtH~~ 205 (250)
T PRK14245 145 FALSGGQQQRLCIARAMAV----SPSVLLMDEPASALDPISTAKVEELIHELKK---DYTIVIVTHNM 205 (250)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCH
Confidence 3599999999999988864 4689999999999999999999999988753 57899999984
No 154
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.01 E-value=1e-05 Score=81.37 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+.+|||++++||+.++..+.+.|.+... .+.-+|++||+.
T Consensus 135 ~~LS~G~~qrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~ 196 (218)
T cd03266 135 GGFSTGMRQKVAIARALVH----DPPVLLLDEPTTGLDVMATRALREFIRQLRA--LGKCILFSTHIM 196 (218)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 4599999999999988874 4689999999999999999999999988754 266899999985
No 155
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.01 E-value=6.6e-06 Score=75.98 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=49.0
Q ss_pred cccccCchhHHHHHHHHHHH-hcccCCCC-ceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 935 SAHHQSGGERSVSTILYLVS-LQDLTNCP-FRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 935 ~~~~lSGGErs~~~lall~a-l~~~~~~P-f~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+...|||||+.++.+|=.+| +|...|.| ..+|||.+++||-..-..+++...+++.. ..=+++|-|++
T Consensus 132 ~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~--g~~V~~VLHDL 201 (259)
T COG4559 132 DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE--GGAVLAVLHDL 201 (259)
T ss_pred chhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc--CCcEEEEEccc
Confidence 44557888888888777777 67777777 66778888888877777777777777653 46677777764
No 156
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.01 E-value=1.3e-05 Score=76.90 Aligned_cols=60 Identities=22% Similarity=0.218 Sum_probs=52.4
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
|||||+.+++||..++. +.++++|||++++||+..+..+.+.|.+... .+.-+|++||+.
T Consensus 97 LS~G~~qrv~la~al~~----~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~ 156 (173)
T cd03246 97 LSGGQRQRLGLARALYG----NPRILVLDEPNSHLDVEGERALNQAIAALKA--AGATRIVIAHRP 156 (173)
T ss_pred cCHHHHHHHHHHHHHhc----CCCEEEEECCccccCHHHHHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 99999999999987774 5789999999999999999999999987754 267899999985
No 157
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.00 E-value=1.4e-05 Score=75.40 Aligned_cols=60 Identities=20% Similarity=0.361 Sum_probs=51.8
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
|||||+.++++|-.++. +.|+++|||++.+||..++..+.+.|.+... .+.-+|++||+.
T Consensus 83 LS~G~~qrl~laral~~----~p~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~sh~~ 142 (163)
T cd03216 83 LSVGERQMVEIARALAR----NARLLILDEPTAALTPAEVERLFKVIRRLRA--QGVAVIFISHRL 142 (163)
T ss_pred cCHHHHHHHHHHHHHhc----CCCEEEEECCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 99999999999987764 4589999999999999999999999988754 266788888884
No 158
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=1.1e-05 Score=82.64 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=53.5
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++++||+.++..+.+.|.+.+. ..+.-+|++||+.
T Consensus 143 ~~LS~G~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~tH~~ 205 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQ----QPKLILADEPVASLDPASSRQVMDLLKRINR-EEGITVIVSLHQV 205 (241)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4599999999999988874 4689999999999999999999999988764 1256799999984
No 159
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.00 E-value=1.2e-05 Score=80.50 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.++++|||+++|||+.++..+.+.|.+.+. .+.-+|++||..
T Consensus 134 ~~LS~G~~qrv~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sh~~ 195 (213)
T cd03262 134 AQLSGGQQQRVAIARALAM----NPKVMLFDEPTSALDPELVGEVLDVMKDLAE--EGMTMVVVTHEM 195 (213)
T ss_pred cccCHHHHHHHHHHHHHhc----CCCEEEEeCCccCCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCH
Confidence 4599999999999887774 3579999999999999999999999988764 256799999884
No 160
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.99 E-value=1.2e-05 Score=80.21 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=53.3
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.++++|..|+. +.++++|||++++||..++..+.+.|.+.+. ..+.-+|++||+.
T Consensus 127 ~~LS~G~~qrv~ia~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~ 189 (211)
T cd03298 127 GELSGGERQRVALARVLVR----DKPVLLLDEPFAALDPALRAEMLDLVLDLHA-ETKMTVLMVTHQP 189 (211)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCH
Confidence 3599999999999998873 4689999999999999999999999987754 1256789999985
No 161
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.99 E-value=1.2e-05 Score=79.08 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||......+.+.|.+.+. .+.-+|++||+.
T Consensus 126 ~~LS~G~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sH~~ 187 (198)
T TIGR01189 126 AQLSAGQQRRLALARLWLS----RAPLWILDEPTTALDKAGVALLAGLLRAHLA--RGGIVLLTTHQD 187 (198)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEEEccc
Confidence 4599999999999887764 4689999999999999999999998888754 256799999986
No 162
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.98 E-value=1.2e-05 Score=81.38 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=53.3
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||+.+...+.+.|.+.+. ..+.-+|++||+.
T Consensus 145 ~~LS~Ge~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~ 207 (228)
T PRK10584 145 AQLSGGEQQRVALARAFNG----RPDVLFADEPTGNLDRQTGDKIADLLFSLNR-EHGTTLILVTHDL 207 (228)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCH
Confidence 3499999999999988774 4689999999999999999999999988754 1256899999985
No 163
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.98 E-value=1.3e-05 Score=78.89 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=54.8
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDL 1008 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l 1008 (1050)
+..|||||+.+++||..|+. +.|+++|||++++||...+..+.+.|.+.+. ....-+|++|||.+..+
T Consensus 116 ~~~LS~Ge~qrl~laral~~----~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~~t~ii~~~h~~~~~ 183 (202)
T cd03233 116 VRGISGGERKRVSIAEALVS----RASVLCWDNSTRGLDSSTALEILKCIRTMAD-VLKTTTFVSLYQASDEI 183 (202)
T ss_pred hhhCCHHHHHHHHHHHHHhh----CCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hCCCEEEEEEcCCHHHH
Confidence 45699999999999998875 3589999999999999999999998887754 12456788888764433
No 164
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.98 E-value=1.4e-05 Score=78.90 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=53.5
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++.+||......+.+.|.+... .+..+|++||..
T Consensus 126 ~~LS~G~~~rv~laral~~----~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~sh~~ 187 (200)
T PRK13540 126 GLLSSGQKRQVALLRLWMS----KAKLWLLDEPLVALDELSLLTIITKIQEHRA--KGGAVLLTSHQD 187 (200)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEEeCCCcccCHHHHHHHHHHHHHHHH--cCCEEEEEeCCc
Confidence 3499999999999988875 3589999999999999999999999988654 267899999984
No 165
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.98 E-value=1.1e-05 Score=81.16 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=52.8
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..|+. +.|+++|||++++||+.++..+.+.|.+.+. ..+.-+|++||..
T Consensus 139 ~~LS~G~~qrv~la~al~~----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~ 201 (218)
T cd03255 139 SELSGGQQQRVAIARALAN----DPKIILADEPTGNLDSETGKEVMELLRELNK-EAGTTIVVVTHDP 201 (218)
T ss_pred hhcCHHHHHHHHHHHHHcc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCeEEEEECCH
Confidence 3599999999999887764 4689999999999999999999999988754 1256789999985
No 166
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.98 E-value=1.4e-05 Score=80.86 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=52.8
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++++||+.+...+.+.|.+.+. +.-+|++||+.
T Consensus 149 ~~LSgG~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~ 209 (226)
T cd03248 149 SQLSGGQKQRVAIARALIR----NPQVLILDEATSALDAESEQQVQQALYDWPE---RRTVLVIAHRL 209 (226)
T ss_pred CcCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHcC---CCEEEEEECCH
Confidence 4599999999999988763 4589999999999999999999999988754 47899999984
No 167
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.98 E-value=1.4e-05 Score=82.59 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=53.8
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.++|.+.+. .+..+|++||..
T Consensus 151 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~g~tiiivsH~~ 212 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAM----EPEVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEM 212 (257)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCH
Confidence 4599999999999988774 3689999999999999999999999888764 368899999984
No 168
>COG5293 Predicted ATPase [General function prediction only]
Probab=97.97 E-value=0.032 Score=57.88 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHhcC-CcceEEEeecCCCcccccceEEEEEecCCCCccccccccc
Q 001581 864 KRFLAEIDALKEKWLPTLRNL---VAQINETFSRNFQEM-AVAGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQ 939 (1050)
Q Consensus 864 ~~l~~~i~~l~~~~~~~~~~~---~~~i~~~f~~~f~~l-~~~g~~~l~~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~l 939 (1050)
..++..+-++....+..+... |..+..-|....+.+ .+.|.+.++.+.......|++|.-..|++.
T Consensus 416 ~~lkhe~l~~~~r~y~e~q~q~~~~~~~~~lF~~~~r~~yd~~G~L~~~~~kng~~tfg~eI~~~~pd~~---------- 485 (591)
T COG5293 416 GTLKHECLDLEERIYTEVQQQCSLFASIGRLFKEMIREVYDCYGSLRVTTNKNGHLTFGAEITDAAPDSA---------- 485 (591)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCceeeeeeeeccCCCch----------
Confidence 333444444444444444443 677777777777666 477998888443334566888776654432
Q ss_pred CchhH--HHHHHHHHHHhcc--cCCCC-ceEeec-cccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCC
Q 001581 940 SGGER--SVSTILYLVSLQD--LTNCP-FRVVDE-INQGMDPINERKMFQQLVRAASQPNTPQCFLLTPK 1003 (1050)
Q Consensus 940 SGGEr--s~~~lall~al~~--~~~~P-f~vlDE-id~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~ 1003 (1050)
|-|-- -.-.+.|-+|++. -+|+| |.+=|- ++-++|+.-...+...+.+.|. +...|||+---+
T Consensus 486 s~G~~~mki~c~dl~la~lr~~ndpspriliHDgs~f~~~d~rk~~lll~v~~~~ae-srg~Qy~~Tln~ 554 (591)
T COG5293 486 SLGNTYMKIMCIDLDLAVLRALNDPSPRILIHDGSVFESLDDRKKELLLRVIRQYAE-SRGIQYVMTLND 554 (591)
T ss_pred hhccceeeeehHHHHHHHHHHccCCCccEEEecCcccCCCcHHHHHHHHHHHHHHHH-hcCCeEEEEecc
Confidence 33311 1122344444333 36788 567777 8889999888777766666663 458899976544
No 169
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.97 E-value=1.6e-05 Score=79.22 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++.+||..+...+.+.|.+... .+.-+|++||+.
T Consensus 136 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~ 197 (214)
T PRK13543 136 RQLSAGQKKRLALARLWLS----PAPLWLLDEPYANLDLEGITLVNRMISAHLR--GGGAALVTTHGA 197 (214)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCh
Confidence 4499999999999998874 4689999999999999999999998887765 256799999985
No 170
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.97 E-value=1.1e-05 Score=82.07 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+.+.. .+.=+|++||+.
T Consensus 135 ~~LSgG~~qrv~ia~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsH~~ 197 (235)
T cd03261 135 AELSGGMKKRVALARALAL----DPELLLYDEPTAGLDPIASGVIDDLIRSLKKE-LGLTSIMVTHDL 197 (235)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEecCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCH
Confidence 3599999999999988874 46899999999999999999999999887541 245689999884
No 171
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.97 E-value=1.2e-05 Score=82.38 Aligned_cols=63 Identities=22% Similarity=0.300 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||+.++..+.+.|.+.+.. .+.-+|++||+.
T Consensus 127 ~~LSgGq~qrl~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tviivsH~~ 189 (255)
T PRK11248 127 WQLSGGQRQRVGIARALAA----NPQLLLLDEPFGALDAFTREQMQTLLLKLWQE-TGKQVLLITHDI 189 (255)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 4599999999999998874 46899999999999999999999988876431 256799999984
No 172
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.97 E-value=1.3e-05 Score=81.78 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||..++..+.+.|.+.+. .+.-+|++||+.
T Consensus 142 ~~LSgG~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~vsH~~ 203 (236)
T cd03219 142 GELSYGQQRRLEIARALAT----DPKLLLLDEPAAGLNPEETEELAELIRELRE--RGITVLLVEHDM 203 (236)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCH
Confidence 4599999999999988874 4689999999999999999999999988764 256789999984
No 173
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.97 E-value=1.4e-05 Score=80.10 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=52.9
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||+..+..+.+.|.+...+ +.-+|++||+.
T Consensus 135 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tiiivtH~~ 196 (214)
T cd03292 135 AELSGGEQQRVAIARAIVN----SPTILIADEPTGNLDPDTTWEIMNLLKKINKA--GTTVVVATHAK 196 (214)
T ss_pred hhcCHHHHHHHHHHHHHHc----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCH
Confidence 3599999999999998874 46899999999999999999999999887542 56789999984
No 174
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.97 E-value=1.4e-05 Score=82.21 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||+.++..+.+.|.+... +.-+|++||+.
T Consensus 145 ~~LSgG~~qrv~laral~~----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~ 205 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAF----QPEVLLADEPTANLDPENTAKIESLFLELKK---DMTIVLVTHFP 205 (250)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 4599999999999988873 4689999999999999999999999988753 57899999984
No 175
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.97 E-value=1.5e-05 Score=77.19 Aligned_cols=60 Identities=17% Similarity=0.304 Sum_probs=52.2
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
|||||+.+++||..++. +.|+++|||++++||+.++..+.+.|.+... .+..+|++||+.
T Consensus 105 LS~G~~qrl~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~sh~~ 164 (182)
T cd03215 105 LSGGNQQKVVLARWLAR----DPRVLILDEPTRGVDVGAKAEIYRLIRELAD--AGKAVLLISSEL 164 (182)
T ss_pred cCHHHHHHHHHHHHHcc----CCCEEEECCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 99999999999987764 4689999999999999999999999988754 267889999984
No 176
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.97 E-value=1.4e-05 Score=82.37 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=52.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++++||..++..+.+.|.+... ..-+|++||+.
T Consensus 148 ~~LSgGq~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tvii~tH~~ 208 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAV----EPEVLLMDEPASALDPIATQKIEELIHELKA---RYTIIIVTHNM 208 (253)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCeEEEEEecH
Confidence 4599999999999887764 4689999999999999999999999988743 56899999985
No 177
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.97 E-value=1.5e-05 Score=82.00 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=53.6
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..|||||+.+++||..|+. +.|+++|||++++||..++..+.+.|.+... ...+|++||+.
T Consensus 145 ~~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~L~~~~~---~~tiiivsH~~ 206 (251)
T PRK14270 145 ALKLSGGQQQRLCIARTIAV----KPDVILMDEPTSALDPISTLKIEDLMVELKK---EYTIVIVTHNM 206 (251)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCeEEEEEcCH
Confidence 34599999999999998874 4689999999999999999999998888764 47899999984
No 178
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.96 E-value=1.4e-05 Score=80.41 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|++++||++++||+.+...+.+.|.+.+.+ .+.-+|++||+.
T Consensus 130 ~~LS~G~~qr~~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~tH~~ 192 (220)
T cd03265 130 KTYSGGMRRRLEIARSLVH----RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYM 192 (220)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 3599999999999887774 46899999999999999999999999887642 246789999984
No 179
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.96 E-value=1.4e-05 Score=79.02 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=52.7
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++- +.|+++|||++.+||..++..+.+.|.+... .+.-+|++||+.
T Consensus 128 ~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sh~~ 189 (204)
T PRK13538 128 RQLSAGQQRRVALARLWLT----RAPLWILDEPFTAIDKQGVARLEALLAQHAE--QGGMVILTTHQD 189 (204)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCh
Confidence 4599999999999887764 4689999999999999999999998887754 256799999984
No 180
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.96 E-value=1.4e-05 Score=81.44 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++++||..++..+.+.|.+.... +.-+|++||+.
T Consensus 136 ~~LS~G~~qrl~la~al~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~ 197 (237)
T PRK11614 136 GTMSGGEQQMLAIGRALMS----QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ--GMTIFLVEQNA 197 (237)
T ss_pred hhCCHHHHHHHHHHHHHHh----CCCEEEEcCccccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCcH
Confidence 3489999999999988874 46899999999999999999999999887642 56789999984
No 181
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.96 E-value=1.3e-05 Score=81.60 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=53.7
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.+...+.+.|.+.+.. .+.-+|++||..
T Consensus 131 ~~LS~G~~qrl~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~ 193 (236)
T TIGR03864 131 RELNGGHRRRVEIARALLH----RPALLLLDEPTVGLDPASRAAIVAHVRALCRD-QGLSVLWATHLV 193 (236)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCh
Confidence 3599999999999998884 46899999999999999999999999887631 256799999885
No 182
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.96 E-value=1.3e-05 Score=80.12 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||..++..+.+.|.+.+.. .+.-+|++||+.
T Consensus 130 ~~LS~G~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~ 192 (214)
T cd03297 130 AQLSGGEKQRVALARALAA----QPELLLLDEPFSALDRALRLQLLPELKQIKKN-LNIPVIFVTHDL 192 (214)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEecCH
Confidence 3499999999999988874 45899999999999999999999999887641 245689999985
No 183
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.96 E-value=1.5e-05 Score=82.31 Aligned_cols=61 Identities=16% Similarity=0.264 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||..+...+.+.|.+.+. ...+|++||+.
T Consensus 153 ~~LSgG~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~l~~---~~tiiivsH~~ 213 (258)
T PRK14268 153 LSLSGGQQQRLCIARTLAV----KPKIILFDEPTSALDPISTARIEDLIMNLKK---DYTIVIVTHNM 213 (258)
T ss_pred hhCCHHHHHHHHHHHHHHc----CCCEEEEeCCCcccCHHHHHHHHHHHHHHhh---CCEEEEEECCH
Confidence 4599999999999998874 3589999999999999999999999988753 58899999984
No 184
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.96 E-value=1.6e-05 Score=81.60 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=53.3
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..||||||.+++||..|+. +.++++|||++++||+.++..+.++|.+.+. ..-+|++||+.
T Consensus 142 ~~~LSgG~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivsH~~ 203 (247)
T TIGR00972 142 ALGLSGGQQQRLCIARALAV----EPEVLLLDEPTSALDPIATGKIEELIQELKK---KYTIVIVTHNM 203 (247)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCeEEEEecCH
Confidence 34599999999999988873 4679999999999999999999999988765 36799999985
No 185
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.96 E-value=1.8e-05 Score=77.41 Aligned_cols=61 Identities=23% Similarity=0.235 Sum_probs=53.0
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.|||||+.+++||..++. +.|+++|||++.+||..+...+.+.|.+... .+.-+|++||..
T Consensus 111 ~LS~G~~qrv~laral~~----~p~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~sh~~ 171 (194)
T cd03213 111 GLSGGERKRVSIALELVS----NPSLLFLDEPTSGLDSSSALQVMSLLRRLAD--TGRTIICSIHQP 171 (194)
T ss_pred cCCHHHHHHHHHHHHHHc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCc
Confidence 699999999999988874 4689999999999999999999998887754 267899999985
No 186
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.95 E-value=1.8e-05 Score=75.74 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=51.1
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
|||||+.+++||..++. +.++++|||++++||...+..+.++|.+... ..-+|++||..
T Consensus 97 LS~G~~~rl~la~al~~----~p~llllDEP~~gLD~~~~~~l~~~l~~~~~---~~tii~~sh~~ 155 (171)
T cd03228 97 LSGGQRQRIAIARALLR----DPPILILDEATSALDPETEALILEALRALAK---GKTVIVIAHRL 155 (171)
T ss_pred hCHHHHHHHHHHHHHhc----CCCEEEEECCCcCCCHHHHHHHHHHHHHhcC---CCEEEEEecCH
Confidence 99999999999988764 4579999999999999999999998887743 57888888884
No 187
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.95 E-value=1.4e-05 Score=83.03 Aligned_cols=81 Identities=21% Similarity=0.334 Sum_probs=57.6
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeE
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACS 1015 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~~~ 1015 (1050)
+..+|||+|.+++||..|+ ..| +++||||+++|||+..+..+.+.|.+++.. +.--|+||.|.+..+...-+ .
T Consensus 134 ~~~lS~G~kqrl~ia~aL~---~~P-~lliLDEPt~GLDp~~~~~~~~~l~~l~~~--g~~tvlissH~l~e~~~~~d-~ 206 (293)
T COG1131 134 VRTLSGGMKQRLSIALALL---HDP-ELLILDEPTSGLDPESRREIWELLRELAKE--GGVTILLSTHILEEAEELCD-R 206 (293)
T ss_pred hhhcCHHHHHHHHHHHHHh---cCC-CEEEECCCCcCCCHHHHHHHHHHHHHHHhC--CCcEEEEeCCcHHHHHHhCC-E
Confidence 4559999999999998776 344 799999999999999999999999998862 21355555554444433222 3
Q ss_pred EEEEecCC
Q 001581 1016 ILNIMNGP 1023 (1050)
Q Consensus 1016 ~~~~~~~~ 1023 (1050)
|..+.+|.
T Consensus 207 v~il~~G~ 214 (293)
T COG1131 207 VIILNDGK 214 (293)
T ss_pred EEEEeCCE
Confidence 44444553
No 188
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.95 E-value=1.5e-05 Score=81.90 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=53.6
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..|||||+.+++||..|+. +.++++|||++++||..++..+.+.|.+.+. ...+|++||+.
T Consensus 144 ~~~LS~Gq~qr~~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tili~sH~~ 205 (250)
T PRK14262 144 GTRLSGGQQQRLCIARALAV----EPEVILLDEPTSALDPIATQRIEKLLEELSE---NYTIVIVTHNI 205 (250)
T ss_pred hhhcCHHHHHHHHHHHHHhC----CCCEEEEeCCccccCHHHHHHHHHHHHHHhc---CcEEEEEeCCH
Confidence 34599999999999988875 4689999999999999999999999988754 57899999984
No 189
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.95 E-value=2.2e-05 Score=74.30 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=61.4
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeE
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACS 1015 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~~~ 1015 (1050)
+..||||++.+++||-.++. -.|.++.+|||++++||+.++..+.+.|.+... .+.-+|++||..- .+.+.+ .
T Consensus 85 ~~~LSgGq~qrl~laral~~--~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~--~g~tvIivSH~~~-~~~~~d--~ 157 (176)
T cd03238 85 LSTLSGGELQRVKLASELFS--EPPGTLFILDEPSTGLHQQDINQLLEVIKGLID--LGNTVILIEHNLD-VLSSAD--W 157 (176)
T ss_pred cCcCCHHHHHHHHHHHHHhh--CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHH-HHHhCC--E
Confidence 45699999999998886663 223789999999999999999999998887753 3678999999952 233333 4
Q ss_pred EEEEecCCC
Q 001581 1016 ILNIMNGPW 1024 (1050)
Q Consensus 1016 ~~~~~~~~~ 1024 (1050)
++..-+||.
T Consensus 158 i~~l~~g~~ 166 (176)
T cd03238 158 IIDFGPGSG 166 (176)
T ss_pred EEEECCCCC
Confidence 444345665
No 190
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.95 E-value=1.1e-05 Score=85.64 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=54.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+.|||||+.+++||..|+. ..+++|+||++++||..+...+++.|.++.. ..+.-+|||||+.
T Consensus 160 ~~LSgG~~QRv~iArAL~~----~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~~~til~iTHdl 222 (331)
T PRK15079 160 HEFSGGQCQRIGIARALIL----EPKLIICDEPVSALDVSIQAQVVNLLQQLQR-EMGLSLIFIAHDL 222 (331)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCH
Confidence 4599999999999998884 2479999999999999999999998887754 2367899999995
No 191
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.95 E-value=1.6e-05 Score=81.12 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=52.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.++++|||++++||+.++..+.+.|.+.. .+..+|++||+.
T Consensus 138 ~~LS~G~~qrv~la~al~~----~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~g~~vi~~sh~~ 198 (238)
T cd03249 138 SQLSGGQKQRIAIARALLR----NPKILLLDEATSALDAESEKLVQEALDRAM---KGRTTIVIAHRL 198 (238)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHhc---CCCEEEEEeCCH
Confidence 4599999999999988773 468999999999999999999999888764 267899999984
No 192
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.95 E-value=1.7e-05 Score=80.48 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=53.5
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..|||||+.+++||-.++. +.|+++|||++++||...+..+.++|..... +..+|++||+.
T Consensus 137 ~~~LS~G~~~rv~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~ 198 (229)
T cd03254 137 GGNLSQGERQLLAIARAMLR----DPKILILDEATSNIDTETEKLIQEALEKLMK---GRTSIIIAHRL 198 (229)
T ss_pred CCcCCHHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHhcC---CCEEEEEecCH
Confidence 34599999999999998863 4689999999999999999999999987743 67899999985
No 193
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.94 E-value=1.7e-05 Score=78.89 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||+.....+.+.|.+... .+.-+|++||+.
T Consensus 133 ~~lS~G~~qr~~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~ 194 (206)
T TIGR03608 133 YELSGGEQQRVALARAILK----DPPLILADEPTGSLDPKNRDEVLDLLLELND--EGKTIIIVTHDP 194 (206)
T ss_pred hhCCHHHHHHHHHHHHHHc----CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCH
Confidence 3499999999999988774 4689999999999999999999999887764 267889999985
No 194
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.94 E-value=1.5e-05 Score=80.36 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+ .+.|+++|||++++||..++..+.++|.+.+. .+.-+|++||+.
T Consensus 131 ~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~ 192 (222)
T cd03224 131 GTLSGGEQQMLAIARALM----SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD--EGVTILLVEQNA 192 (222)
T ss_pred hhCCHHHHHHHHHHHHHh----cCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 349999999999988776 35689999999999999999999999988764 367899999884
No 195
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.94 E-value=2.8e-05 Score=77.13 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.++++|..++. +.++++|||++++||......+.+.|.+.+.+ +.-+|++||+.
T Consensus 126 ~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~ 187 (207)
T PRK13539 126 GYLSAGQKRRVALARLLVS----NRPIWILDEPTAALDAAAVALFAELIRAHLAQ--GGIVIAATHIP 187 (207)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 3599999999999887774 46899999999999999999999999887652 67799999985
No 196
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.94 E-value=1.7e-05 Score=81.94 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=53.4
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..|||||+.+++||..++. +.|+++|||++++||+.++..+.+.|.+.+. ...+|++||+.
T Consensus 146 ~~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tviivsH~~ 207 (258)
T PRK14241 146 GGGLSGGQQQRLCIARAIAV----EPDVLLMDEPCSALDPISTLAIEDLINELKQ---DYTIVIVTHNM 207 (258)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEecCH
Confidence 34599999999999988774 4689999999999999999999999988754 47899999985
No 197
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.94 E-value=2e-05 Score=74.55 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=51.7
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
||||||.++++|..++. +.++++|||++++||..++..+.+.|.+.+.. ...-+|++||..
T Consensus 72 LSgGq~qrv~laral~~----~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~ 132 (177)
T cd03222 72 LSGGELQRVAIAAALLR----NATFYLFDEPSAYLDIEQRLNAARAIRRLSEE-GKKTALVVEHDL 132 (177)
T ss_pred CCHHHHHHHHHHHHHhc----CCCEEEEECCcccCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCH
Confidence 99999999999988874 35899999999999999999999988877542 226789999984
No 198
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.94 E-value=1.7e-05 Score=81.64 Aligned_cols=62 Identities=16% Similarity=0.269 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||..++..+.+.|.+... .+.-+|++||..
T Consensus 143 ~~LS~Gq~qrv~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~~tH~~ 204 (250)
T PRK11264 143 RRLSGGQQQRVAIARALAM----RPEVILFDEPTSALDPELVGEVLNTIRQLAQ--EKRTMVIVTHEM 204 (250)
T ss_pred hhCChHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCH
Confidence 4599999999999998874 4589999999999999999999998887764 256789999984
No 199
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.94 E-value=1.4e-05 Score=81.41 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+.+. ..+.-+|++||+.
T Consensus 135 ~~LS~G~~qrl~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tvii~sH~~ 197 (239)
T cd03296 135 AQLSGGQRQRVALARALAV----EPKVLLLDEPFGALDAKVRKELRRWLRRLHD-ELHVTTVFVTHDQ 197 (239)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCH
Confidence 4599999999999988875 4689999999999999999999998888754 1245699999985
No 200
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.94 E-value=1.7e-05 Score=82.18 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=52.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.++|.+.+. ..-+|++||+.
T Consensus 153 ~~LS~G~~qrl~laral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~~tiiivtH~~ 213 (269)
T PRK14259 153 YSLSGGQQQRLCIARTIAI----EPEVILMDEPCSALDPISTLKIEETMHELKK---NFTIVIVTHNM 213 (269)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 4599999999999887774 4689999999999999999999999988754 46789999984
No 201
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.94 E-value=1.7e-05 Score=80.52 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.++++|..|+. +.|+++|||++++||+.++..+.+.|.+.+. ..+.-+|++||..
T Consensus 152 ~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~ 214 (236)
T cd03267 152 RQLSLGQRMRAEIAAALLH----EPEILFLDEPTIGLDVVAQENIRNFLKEYNR-ERGTTVLLTSHYM 214 (236)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCEEEEEecCH
Confidence 3499999999999988875 4589999999999999999999999988764 2256788899884
No 202
>PRK10908 cell division protein FtsE; Provisional
Probab=97.94 E-value=1.8e-05 Score=79.73 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+... .+.-+|++||+.
T Consensus 136 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~ 197 (222)
T PRK10908 136 IQLSGGEQQRVGIARAVVN----KPAVLLADEPTGNLDDALSEGILRLFEEFNR--VGVTVLMATHDI 197 (222)
T ss_pred hhCCHHHHHHHHHHHHHHc----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 4599999999999988874 4589999999999999999999998888754 257899999984
No 203
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.94 E-value=1.7e-05 Score=80.47 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=53.3
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++++||...+..+.+.|.+.+. ..+.-+|++||+.
T Consensus 128 ~~LS~G~~qrv~laral~~----~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~-~~~~tiii~sH~~ 190 (232)
T PRK10771 128 GQLSGGQRQRVALARCLVR----EQPILLLDEPFSALDPALRQEMLTLVSQVCQ-ERQLTLLMVSHSL 190 (232)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCH
Confidence 3599999999999988774 4689999999999999999999998887754 1256899999985
No 204
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.94 E-value=1.7e-05 Score=81.15 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. +.|+++|||++++||..++..+.+.|.+... +.-+|++||+.
T Consensus 141 ~~LS~G~~qrv~laral~~----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~ 201 (246)
T PRK14269 141 LALSGGQQQRLCIARALAI----KPKLLLLDEPTSALDPISSGVIEELLKELSH---NLSMIMVTHNM 201 (246)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEecCH
Confidence 3599999999999987774 4689999999999999999999999988754 67899999984
No 205
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.93 E-value=1.8e-05 Score=79.53 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=53.8
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.++++|..++. +.|+++|||++.+||..++..+.+.|.+... .+.-+|++||+.
T Consensus 112 ~~LS~G~~qrv~laral~~----~p~llilDEP~~~LD~~~~~~l~~~l~~~~~--~~~tvii~sH~~ 173 (223)
T TIGR03771 112 GELSGGQRQRVLVARALAT----RPSVLLLDEPFTGLDMPTQELLTELFIELAG--AGTAILMTTHDL 173 (223)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCH
Confidence 3499999999999987774 4689999999999999999999999987764 367899999985
No 206
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.93 E-value=1.4e-05 Score=81.90 Aligned_cols=63 Identities=16% Similarity=0.240 Sum_probs=52.9
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+... ..+.-+|++||..
T Consensus 144 ~~LSgG~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiii~tH~~ 206 (243)
T TIGR02315 144 DQLSGGQQQRVAIARALAQ----QPDLILADEPIASLDPKTSKQVMDYLKRINK-EDGITVIINLHQV 206 (243)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCH
Confidence 4599999999999988874 4689999999999999999999998887754 1246789999985
No 207
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.93 E-value=1.7e-05 Score=81.04 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+... .+.-+|++||+.
T Consensus 140 ~~LS~G~~qrv~laral~~----~p~llilDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~ 201 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMM----EPQVLLFDEPTAALDPEITAQIVSIIRELAE--TGITQVIVTHEV 201 (242)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCH
Confidence 3599999999999988875 4689999999999999999999998887754 256799999984
No 208
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.93 E-value=1.7e-05 Score=80.57 Aligned_cols=62 Identities=23% Similarity=0.285 Sum_probs=52.7
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||..++..+.+.|.+.+. .+.-+|++||+.
T Consensus 132 ~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~~~~~l~~~~~--~~~tii~~sH~~ 193 (232)
T cd03218 132 SSLSGGERRRVEIARALAT----NPKFLLLDEPFAGVDPIAVQDIQKIIKILKD--RGIGVLITDHNV 193 (232)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 4599999999999988875 4689999999999999999999998887764 255688999984
No 209
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.93 E-value=1.6e-05 Score=80.92 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+.+. ..++-+|++||+.
T Consensus 139 ~~LS~G~~qrv~la~al~~----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tvii~sH~~ 201 (233)
T cd03258 139 AQLSGGQKQRVGIARALAN----NPKVLLCDEATSALDPETTQSILALLRDINR-ELGLTIVLITHEM 201 (233)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEecCCCCcCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCH
Confidence 4599999999999988763 4689999999999999999999999988754 1256799999984
No 210
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.93 E-value=1.6e-05 Score=80.67 Aligned_cols=63 Identities=22% Similarity=0.305 Sum_probs=53.3
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. +.|+++|||++++||+.++..+.+.|.+.+. ..+.-+|++||+.
T Consensus 144 ~~LS~G~~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~ 206 (228)
T cd03257 144 HELSGGQRQRVAIARALAL----NPKLLIADEPTSALDVSVQAQILDLLKKLQE-ELGLTLLFITHDL 206 (228)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEecCCCCCCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCH
Confidence 4599999999999887763 5689999999999999999999999988764 2256789999984
No 211
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.93 E-value=1.9e-05 Score=82.94 Aligned_cols=62 Identities=21% Similarity=0.374 Sum_probs=53.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.++.. .++++|||++++||+.++..+.+.|.+... .+.-+|+|||+.
T Consensus 164 ~~LSgGqkqrvalA~aL~~~----P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tiiivtHd~ 225 (305)
T PRK13651 164 FELSGGQKRRVALAGILAME----PDFLVFDEPTAGLDPQGVKEILEIFDNLNK--QGKTIILVTHDL 225 (305)
T ss_pred hhCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeeCH
Confidence 45999999999999988853 589999999999999999999998887764 256799999994
No 212
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.93 E-value=2.1e-05 Score=80.23 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=53.3
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..||||||.+++||-.++. +.++++|||++++||+.++..+.+.|.+.+. +.-+|++||+.
T Consensus 136 ~~~LSgG~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~ 197 (237)
T cd03252 136 GAGLSGGQRQRIAIARALIH----NPRILIFDEATSALDYESEHAIMRNMHDICA---GRTVIIIAHRL 197 (237)
T ss_pred CCcCCHHHHHHHHHHHHHhh----CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC---CCEEEEEeCCH
Confidence 34599999999999998874 4579999999999999999999999988753 56799999985
No 213
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.92 E-value=1.9e-05 Score=81.37 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=53.0
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..|||||+.+++||-.|+. +.++++|||++++||..++..+++.|.+... ..-+|++||+.
T Consensus 148 ~~~LSgG~~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tvii~sH~~ 209 (254)
T PRK14273 148 ALSLSGGQQQRLCIARTLAI----EPNVILMDEPTSALDPISTGKIEELIINLKE---SYTIIIVTHNM 209 (254)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEeCCCcccCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 34599999999999888763 4589999999999999999999999988753 46789999985
No 214
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.92 E-value=1.8e-05 Score=81.03 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=52.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.++++|..|+. +.|+++|||++++||+..+..+.+.|.+.+. ..-+|++||+.
T Consensus 142 ~~LS~Ge~qrv~laral~~----~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~ 202 (242)
T TIGR03411 142 GLLSHGQKQWLEIGMLLMQ----DPKLLLLDEPVAGMTDEETEKTAELLKSLAG---KHSVVVVEHDM 202 (242)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEecCCccCCCHHHHHHHHHHHHHHhc---CCEEEEEECCH
Confidence 3499999999999887764 4689999999999999999999999988764 46899999984
No 215
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.92 E-value=1.6e-05 Score=82.43 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++++||...+..+.+.|.+.+. ..+.-+|++||..
T Consensus 142 ~~LSgGq~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tiiivsH~~ 204 (269)
T PRK11831 142 SELSGGMARRAALARAIAL----EPDLIMFDEPFVGQDPITMGVLVKLISELNS-ALGVTCVVVSHDV 204 (269)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCcEEEEEecCH
Confidence 4599999999999988874 4689999999999999999999999988754 1257899999984
No 216
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.92 E-value=1.9e-05 Score=81.66 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||..++..+.++|.+... ...+|++||+.
T Consensus 154 ~~LS~Gq~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivtH~~ 214 (259)
T PRK14274 154 LSLSGGQQQRLCIARALAT----NPDVLLMDEPTSALDPVSTRKIEELILKLKE---KYTIVIVTHNM 214 (259)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcCH
Confidence 4599999999999988774 4689999999999999999999999988754 57899999984
No 217
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.92 E-value=1.8e-05 Score=79.80 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=53.3
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.++++|..++. +.|+++|||++.+||..+...+.+.|.+.+. .+..+|++||+.
T Consensus 123 ~~LS~G~~~rv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~~tiii~sH~~ 184 (223)
T TIGR03740 123 KQFSLGMKQRLGIAIALLN----HPKLLILDEPTNGLDPIGIQELRELIRSFPE--QGITVILSSHIL 184 (223)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEECCCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCH
Confidence 4599999999999888774 4689999999999999999999999988754 256899999984
No 218
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.92 E-value=2e-05 Score=81.10 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.++. +.++++|||++++||..++..+.++|.+... ...+|++||+.
T Consensus 145 ~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~ 205 (250)
T PRK14240 145 LGLSGGQQQRLCIARALAV----EPEVLLMDEPTSALDPISTLKIEELIQELKK---DYTIVIVTHNM 205 (250)
T ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEEeCH
Confidence 4599999999999998874 4689999999999999999999998888753 57899999984
No 219
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.92 E-value=2e-05 Score=79.37 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=52.7
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.++. +.|+.+|||++++||+.++..+.+.|.+... ...+|++||..
T Consensus 138 ~~LS~G~~qr~~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~ 198 (221)
T cd03244 138 ENLSVGQRQLLCLARALLR----KSKILVLDEATASVDPETDALIQKTIREAFK---DCTVLTIAHRL 198 (221)
T ss_pred CcCCHHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHhcC---CCEEEEEeCCH
Confidence 4599999999999988873 4579999999999999999999999987754 57899999984
No 220
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.91 E-value=1.9e-05 Score=80.70 Aligned_cols=62 Identities=16% Similarity=0.270 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||..++..+.+.|.+.+. .+.-+|++||+.
T Consensus 135 ~~LS~G~~qrv~la~al~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~ 196 (240)
T PRK09493 135 SELSGGQQQRVAIARALAV----KPKLMLFDEPTSALDPELRHEVLKVMQDLAE--EGMTMVIVTHEI 196 (240)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCH
Confidence 3499999999999998873 4689999999999999999999998887754 257799999985
No 221
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.91 E-value=1.8e-05 Score=81.13 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=52.8
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.||||||.+++||..|+. +.++++|||++++||..++..+.+.|.+.+. .+.-+|++||+.
T Consensus 144 ~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~vsH~~ 204 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALL----EPKLAILDEIDSGLDIDALKIVAEGINRLRE--PDRSFLIITHYQ 204 (243)
T ss_pred CcCHHHHHHHHHHHHHhc----CCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCcEEEEEEecH
Confidence 399999999999988874 4689999999999999999999999988754 256799999984
No 222
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.91 E-value=2e-05 Score=81.01 Aligned_cols=61 Identities=15% Similarity=0.235 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||..+...+.+.|.+... ...+|++||+.
T Consensus 148 ~~LS~Gq~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiiisH~~ 208 (251)
T PRK14244 148 FELSGGQQQRLCIARAIAV----KPTMLLMDEPCSALDPVATNVIENLIQELKK---NFTIIVVTHSM 208 (251)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCH
Confidence 4599999999999987773 4689999999999999999999998887753 67899999985
No 223
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.91 E-value=2.1e-05 Score=80.16 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=53.3
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||..++..+.+.|..... ..+.-+|++||+.
T Consensus 130 ~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tii~~sH~~ 192 (241)
T PRK14250 130 KNLSGGEAQRVSIARTLAN----NPEVLLLDEPTSALDPTSTEIIEELIVKLKN-KMNLTVIWITHNM 192 (241)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hCCCEEEEEeccH
Confidence 4599999999999998873 4589999999999999999999998887754 1256899999984
No 224
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.91 E-value=2.2e-05 Score=81.64 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=53.3
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++++||+.+...+.+.|.+.+.. +.-+|++||+.
T Consensus 141 ~~LSgG~~qrv~laraL~~----~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--g~tviivsH~~ 202 (272)
T PRK15056 141 GELSGGQKKRVFLARAIAQ----QGQVILLDEPFTGVDVKTEARIISLLRELRDE--GKTMLVSTHNL 202 (272)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence 4599999999999988874 46899999999999999999999999887642 56799999984
No 225
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.91 E-value=2.4e-05 Score=78.50 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCC-CCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTN-CPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~-~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.++++|-.++. .| .++++|||++++||+.+...+.+.|.+... .+.-+|+|||+.
T Consensus 136 ~~LSgG~~qrv~laral~~---~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~--~g~tii~itH~~ 199 (226)
T cd03270 136 PTLSGGEAQRIRLATQIGS---GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD--LGNTVLVVEHDE 199 (226)
T ss_pred CcCCHHHHHHHHHHHHHHh---CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh--CCCEEEEEEeCH
Confidence 4599999999999998884 33 259999999999999999999999988754 255699999995
No 226
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.91 E-value=2.3e-05 Score=82.00 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=53.5
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||-.|+. +.|+++|||++++||+..+..+.+.|.+... .+.-+|++||+.
T Consensus 143 ~~LSgGqkqrvaiA~aL~~----~p~illLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~vtHd~ 204 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAM----EPEVLVLDEPTAGLDPKARIEMMQLFESIHQ--SGQTVVLVTHLM 204 (288)
T ss_pred ccCCHHHHHHHHHHHHHHh----CCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCH
Confidence 4599999999999998885 3579999999999999999999998887754 267899999984
No 227
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.91 E-value=2.2e-05 Score=80.01 Aligned_cols=78 Identities=23% Similarity=0.363 Sum_probs=60.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeEE
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSI 1016 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~~~~ 1016 (1050)
..|||||+.+++||..|+. +.++++|||++.+||+.++..+.+.|.+... ...+|++||+. ..+...+ ++
T Consensus 137 ~~LS~G~~qrv~la~al~~----~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~-~~~~~~d--~v 206 (234)
T cd03251 137 VKLSGGQRQRIAIARALLK----DPPILILDEATSALDTESERLVQAALERLMK---NRTTFVIAHRL-STIENAD--RI 206 (234)
T ss_pred CcCCHHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHhcC---CCEEEEEecCH-HHHhhCC--EE
Confidence 3499999999999998874 3679999999999999999999999987753 67899999985 2222222 44
Q ss_pred EEEecCCC
Q 001581 1017 LNIMNGPW 1024 (1050)
Q Consensus 1017 ~~~~~~~~ 1024 (1050)
+.+.+|.-
T Consensus 207 ~~l~~G~i 214 (234)
T cd03251 207 VVLEDGKI 214 (234)
T ss_pred EEecCCeE
Confidence 54456654
No 228
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.91 E-value=2.2e-05 Score=82.93 Aligned_cols=62 Identities=26% Similarity=0.463 Sum_probs=54.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. +.++++|||++++||+..+..+.+.|.+... .+.-+|++||+.
T Consensus 175 ~~LSgGqkqRvaiAraL~~----~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~--~g~TiiivtHd~ 236 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAI----QPEILIFDEPTAGLDPKGEHEMMQLILDAKA--NNKTVFVITHTM 236 (320)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCH
Confidence 3499999999999998875 4789999999999999999999999987754 267899999994
No 229
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.91 E-value=1.9e-05 Score=79.87 Aligned_cols=63 Identities=24% Similarity=0.315 Sum_probs=52.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++++||..+...+.+.|.+.+. ..+.-+|++||..
T Consensus 124 ~~LS~G~~qrv~laral~~----~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~ 186 (230)
T TIGR02770 124 FQLSGGMLQRVMIALALLL----EPPFLIADEPTTDLDVVNQARVLKLLRELRQ-LFGTGILLITHDL 186 (230)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEEcCCccccCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4599999999999998873 4589999999999999999999998887754 1256788888884
No 230
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.91 E-value=2.3e-05 Score=77.10 Aligned_cols=62 Identities=23% Similarity=0.300 Sum_probs=53.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++.+||..+...+.+.|.+.+. ...-+|++||+.
T Consensus 103 ~~LS~G~~qrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~L~~~~~--~~~tiii~sh~~ 164 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLL----EPDLAILDEPDSGLDIDALRLVAEVINKLRE--EGKSVLIITHYQ 164 (200)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCH
Confidence 4699999999999988874 4689999999999999999999999988764 257899999984
No 231
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.91 E-value=2.1e-05 Score=81.04 Aligned_cols=62 Identities=15% Similarity=0.252 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++.+||+.++..+.+.|.+... .+.-+|++||+.
T Consensus 137 ~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~l~~--~~~tiii~tH~~ 198 (255)
T PRK11231 137 TDLSGGQRQRAFLAMVLAQ----DTPVVLLDEPTTYLDINHQVELMRLMRELNT--QGKTVVTVLHDL 198 (255)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEECCH
Confidence 4599999999999988874 3589999999999999999999999988754 256799999984
No 232
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.91 E-value=2.1e-05 Score=81.17 Aligned_cols=61 Identities=21% Similarity=0.305 Sum_probs=52.8
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++++||..++..+.+.|.+... ...+|++||+.
T Consensus 147 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~ 207 (252)
T PRK14239 147 LGLSGGQQQRVCIARVLAT----SPKIILLDEPTSALDPISAGKIEETLLGLKD---DYTMLLVTRSM 207 (252)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCccccCHHHHHHHHHHHHHHhh---CCeEEEEECCH
Confidence 4599999999999988873 4589999999999999999999998887754 47899999984
No 233
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.91 E-value=2.4e-05 Score=80.25 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=52.9
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++.+||+..+..+.+.|.+... .+..+|++||+.
T Consensus 142 ~~LS~Gq~qrv~Laral~~----~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~--~g~tiIiisH~~ 203 (264)
T PRK13546 142 KKYSSGMRAKLGFSINITV----NPDILVIDEALSVGDQTFAQKCLDKIYEFKE--QNKTIFFVSHNL 203 (264)
T ss_pred ccCCHHHHHHHHHHHHHhh----CCCEEEEeCccccCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCH
Confidence 3599999999998877663 5689999999999999999999998887754 367999999984
No 234
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.91 E-value=2.2e-05 Score=81.41 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||+.+...+.+.|.+.+. +.-+|++||+.
T Consensus 166 ~~LSgGe~qrv~laraL~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivsH~~ 226 (271)
T PRK14238 166 YGLSGGQQQRLCIARCLAI----EPDVILMDEPTSALDPISTLKVEELVQELKK---DYSIIIVTHNM 226 (271)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc---CCEEEEEEcCH
Confidence 3499999999999988874 4689999999999999999999998888764 57899999984
No 235
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.90 E-value=2.6e-05 Score=75.24 Aligned_cols=62 Identities=26% Similarity=0.466 Sum_probs=53.0
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..|||||+.+++||..++. +.|+++|||++++||......+++.|.+... +.=+|++||+.
T Consensus 96 ~~~LS~G~~qrv~laral~~----~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~ 157 (178)
T cd03247 96 GRRFSGGERQRLALARILLQ----DAPIVLLDEPTVGLDPITERQLLSLIFEVLK---DKTLIWITHHL 157 (178)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEECCcccCCHHHHHHHHHHHHHHcC---CCEEEEEecCH
Confidence 55699999999999988873 3589999999999999999999998887743 57789999884
No 236
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.90 E-value=2.2e-05 Score=81.60 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. +.|+++|||++.+||..+...+.+.|.+... ...+|++||+.
T Consensus 162 ~~LSgGq~qrl~LAral~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tiiivsH~~ 222 (276)
T PRK14271 162 FRLSGGQQQLLCLARTLAV----NPEVLLLDEPTSALDPTTTEKIEEFIRSLAD---RLTVIIVTHNL 222 (276)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 4599999999999988873 4589999999999999999999998988764 47999999985
No 237
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.90 E-value=2.4e-05 Score=79.00 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||......+.+.|.+... .+.-+|++||+.
T Consensus 148 ~~LS~G~~qrl~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tii~vsH~~ 209 (224)
T TIGR02324 148 ATFSGGEQQRVNIARGFIA----DYPILLLDEPTASLDAANRQVVVELIAEAKA--RGAALIGIFHDE 209 (224)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCH
Confidence 4599999999999987763 4589999999999999999999998988754 256799999993
No 238
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.90 E-value=1.6e-05 Score=84.33 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=54.6
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
++.||||++.+++||..|+. ..+++|+||++.+||..+...++++|.++.. ..+.-+|+|||+.
T Consensus 151 p~~LSgGq~QRv~iArAL~~----~P~llilDEPts~LD~~~~~~il~lL~~l~~-~~g~til~iTHdl 214 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIAC----RPKLLIADEPTTALDVTIQAQIIELLLELQQ-KENMALVLITHDL 214 (326)
T ss_pred chhCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 34699999999999998885 2468999999999999999999999988754 2356799999995
No 239
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.90 E-value=2.2e-05 Score=82.95 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=52.9
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..|+. +.++++|||+++|||+.++..+.+.|.+... .+.-+|++||..
T Consensus 123 ~~LSgG~~qrv~la~al~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~tvi~~sH~~ 184 (302)
T TIGR01188 123 GTYSGGMRRRLDIAASLIH----QPDVLFLDEPTTGLDPRTRRAIWDYIRALKE--EGVTILLTTHYM 184 (302)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCH
Confidence 4599999999999887764 4689999999999999999999998888764 256799999984
No 240
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.90 E-value=0.0012 Score=69.80 Aligned_cols=146 Identities=16% Similarity=0.195 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCcceEEEee-cCCCcccccce
Q 001581 841 EYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLD-EHESDFDKFGI 919 (1050)
Q Consensus 841 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~i~~~f~~~f~~l~~~g~~~l~-~~~~~~~~~~l 919 (1050)
.|..++...+.|+.....-+.+++.|.+.+..+..-+ --..-+.+.|.+.+..-.+.....|. ... +.++
T Consensus 446 ~Y~g~ekk~n~LE~e~kn~~~ev~kls~ei~~ie~~l-----~~~~~~vke~nq~l~~g~gra~~~L~~~~k----ek~y 516 (758)
T COG4694 446 KYCGLEKKINNLEKEIKNNQEEVKKLSNEIKEIEKFL-----VSIKPIVKEINQTLLKGYGRANFSLACTEK----EKFY 516 (758)
T ss_pred HHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHH-----hhchhhHHHHHHHHHhhcchheeeeeeccc----hhhh
Confidence 4555556666666666666666666666555554333 11222334555555544444444454 111 2344
Q ss_pred EEEEEecCCCCcccccccccCchhHHHHHHHHHHHhcccCCC----CceEeeccccCCChHhHHHHHHHHHHHhcCCCCC
Q 001581 920 LIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLTNC----PFRVVDEINQGMDPINERKMFQQLVRAASQPNTP 995 (1050)
Q Consensus 920 ~i~v~~~~~~~~~~~~~~~lSGGErs~~~lall~al~~~~~~----Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~ 995 (1050)
.| +...| ++..+.||-||++.+|++|-+|=...+|- -..|+|++=..||....-+++..+..... ..-
T Consensus 517 ~i--~r~~g----~~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t--~~k 588 (758)
T COG4694 517 RI--QREDG----QLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKT--NIK 588 (758)
T ss_pred ee--ecccC----ccccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHh--Cce
Confidence 33 33233 34445599999999999999884333332 25899999999999998888877766554 478
Q ss_pred eEEEEcCC
Q 001581 996 QCFLLTPK 1003 (1050)
Q Consensus 996 Q~i~iTp~ 1003 (1050)
|+|++||.
T Consensus 589 QviVLtHn 596 (758)
T COG4694 589 QVIVLTHN 596 (758)
T ss_pred EEEEEecc
Confidence 99999999
No 241
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.90 E-value=2.3e-05 Score=81.54 Aligned_cols=62 Identities=19% Similarity=0.337 Sum_probs=52.8
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++++||..++..+.++|.+.... +.=+|++||..
T Consensus 135 ~~LSgG~~qrl~laraL~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tii~vtH~~ 196 (271)
T PRK13638 135 QCLSHGQKKRVAIAGALVL----QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ--GNHVIISSHDI 196 (271)
T ss_pred hhCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 4599999999999998874 46899999999999999999999999887642 45688999884
No 242
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.90 E-value=2.3e-05 Score=81.99 Aligned_cols=63 Identities=17% Similarity=0.337 Sum_probs=54.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.++. +.|+++|||++++||+.++..+.+.|.+.+. ..+.-+|++||+.
T Consensus 143 ~~LSgGq~qrv~iAraL~~----~P~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tvi~vtHd~ 205 (287)
T PRK13637 143 FELSGGQKRRVAIAGVVAM----EPKILILDEPTAGLDPKGRDEILNKIKELHK-EYNMTIILVSHSM 205 (287)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEECCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4599999999999998875 3589999999999999999999999988764 2367899999994
No 243
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.89 E-value=2e-05 Score=81.23 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+- +.|+++|||++++||+.++..+.+.|.+.+. ..+.-+|++||+.
T Consensus 147 ~~LSgG~~qrv~laral~~----~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~vsH~~ 209 (253)
T TIGR02323 147 RAFSGGMQQRLQIARNLVT----RPRLVFMDEPTGGLDVSVQARLLDLLRGLVR-DLGLAVIIVTHDL 209 (253)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4599999999999998863 4689999999999999999999998887654 2367899999984
No 244
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.89 E-value=2.1e-05 Score=78.65 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.++++|..++. +.++++|||++++||+.+...+.+.|.+.+.+ .+.-+|++||+.
T Consensus 129 ~~LS~G~~qr~~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~sH~~ 191 (213)
T cd03301 129 KQLSGGQRQRVALGRAIVR----EPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR-LGTTTIYVTHDQ 191 (213)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 3599999999999988874 46899999999999999999999989887641 256799999984
No 245
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.89 E-value=2.3e-05 Score=81.16 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=53.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||..++..+.+.|.+.+. ..+.-+|++||+.
T Consensus 146 ~~LSgG~~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~-~~~~tiii~sH~~ 208 (265)
T PRK10575 146 DSLSGGERQRAWIAMLVAQ----DSRCLLLDEPTSALDIAHQVDVLALVHRLSQ-ERGLTVIAVLHDI 208 (265)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 3599999999999988875 4689999999999999999999999988764 1256799999984
No 246
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.89 E-value=2.5e-05 Score=81.54 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=52.5
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||..+...+.+.|.+.+. ..-+|++||+.
T Consensus 179 ~~LSgGe~qrv~LAraL~~----~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~---~~tiii~tH~~ 239 (285)
T PRK14254 179 LDLSGGQQQRLCIARAIAP----DPEVILMDEPASALDPVATSKIEDLIEELAE---EYTVVIVTHNM 239 (285)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 3499999999999998863 4589999999999999999999999988765 35799999984
No 247
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.89 E-value=2e-05 Score=81.58 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+.+. ..+.-+|++||+.
T Consensus 148 ~~LS~G~~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tviivsH~~ 210 (267)
T PRK15112 148 HMLAPGQKQRLGLARALIL----RPKVIIADEALASLDMSMRSQLINLMLELQE-KQGISYIYVTQHL 210 (267)
T ss_pred hhcCHHHHHHHHHHHHHHh----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCcEEEEEeCCH
Confidence 4599999999999988874 4689999999999999999999999988754 1256799999984
No 248
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.88 E-value=2.5e-05 Score=80.70 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=52.9
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++++||..++..+.+.|.+... ..-+|++||+.
T Consensus 155 ~~LS~Gq~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tiii~sH~~ 215 (260)
T PRK10744 155 YSLSGGQQQRLCIARGIAI----RPEVLLLDEPCSALDPISTGRIEELITELKQ---DYTVVIVTHNM 215 (260)
T ss_pred CCCCHHHHHHHHHHHHHHC----CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCH
Confidence 4599999999999998874 4689999999999999999999999988753 46799999984
No 249
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.88 E-value=2.7e-05 Score=80.07 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=53.3
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..|||||+.+++||..++. +.++++|||++++||..+...+.+.|.+.+. ..-+|++||+.
T Consensus 143 ~~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tii~~sh~~ 204 (249)
T PRK14253 143 AFGLSGGQQQRLCIARTIAM----EPDVILMDEPTSALDPIATHKIEELMEELKK---NYTIVIVTHSM 204 (249)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEecCH
Confidence 34599999999999987764 3579999999999999999999999988764 47899999984
No 250
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.88 E-value=2.4e-05 Score=82.71 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=53.3
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..|+. +.++++|||+++|||+.++..+.+.|.+.+. .+.-+|++||..
T Consensus 134 ~~LSgG~~qrv~la~al~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~til~~sH~~ 195 (303)
T TIGR01288 134 ALLSGGMKRRLTLARALIN----DPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFM 195 (303)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCH
Confidence 4599999999999988873 4689999999999999999999999988764 256799999984
No 251
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.88 E-value=2.6e-05 Score=80.78 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=52.5
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.++|.+.+. ..-+|++||+.
T Consensus 162 ~~LSgGq~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~---~~tiiivtH~~ 222 (267)
T PRK14235 162 TGLSGGQQQRLCIARAIAV----SPEVILMDEPCSALDPIATAKVEELIDELRQ---NYTIVIVTHSM 222 (267)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc---CCeEEEEEcCH
Confidence 4599999999999998874 4689999999999999999999999988754 45788899984
No 252
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.88 E-value=2.9e-05 Score=76.24 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=51.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.++++|..++. +.|+++|||++++||+..+..+.+.|..... .+.-+|++||+.
T Consensus 122 ~~LS~G~~~rl~la~al~~----~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~sh~~ 183 (195)
T PRK13541 122 YSLSSGMQKIVAIARLIAC----QSDLWLLDEVETNLSKENRDLLNNLIVMKAN--SGGIVLLSSHLE 183 (195)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCc
Confidence 3499999999999888774 4689999999999999999998888865543 356788888884
No 253
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.88 E-value=2.3e-05 Score=79.96 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++++||...+..+.+.|.+.... .+.-+|++||+.
T Consensus 119 ~~LSgGq~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tiiivsH~~ 181 (251)
T PRK09544 119 QKLSGGETQRVLLARALLN----RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRE-LDCAVLMVSHDL 181 (251)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCH
Confidence 4599999999999988874 46899999999999999999999988877541 246799999984
No 254
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.88 E-value=2.8e-05 Score=80.35 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=53.7
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+ .+.|+++|||++++||..+...+.++|.+.+. ..+.-+|++||+.
T Consensus 149 ~~LSgGq~qrv~laral~----~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~-~~~~tiiivsH~~ 211 (261)
T PRK14258 149 LDLSGGQQQRLCIARALA----VKPKVLLMDEPCFGLDPIASMKVESLIQSLRL-RSELTMVIVSHNL 211 (261)
T ss_pred ccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-hCCCEEEEEECCH
Confidence 459999999999999887 34689999999999999999999999987653 1367899999984
No 255
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.88 E-value=2.5e-05 Score=81.78 Aligned_cols=62 Identities=19% Similarity=0.316 Sum_probs=52.9
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||+.++..+.+.|.+... .+.=+|++||+.
T Consensus 144 ~~LSgG~~qrv~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiiivsH~~ 205 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAM----EPKILVLDEPTAGLDPKGRKELMTLFKKLHQ--SGMTIVLVTHLM 205 (280)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeccH
Confidence 4599999999999988875 3589999999999999999999999988754 256789999984
No 256
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.87 E-value=3.3e-05 Score=73.23 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=51.3
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
...|||||+.++++|-.++. +.|+++|||++++||..+...+.+.|.+. ..-+|++||+.
T Consensus 89 ~~~LS~G~~~rv~laral~~----~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~ 148 (166)
T cd03223 89 DDVLSGGEQQRLAFARLLLH----KPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRP 148 (166)
T ss_pred CCCCCHHHHHHHHHHHHHHc----CCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCCh
Confidence 45699999999999887763 56899999999999999999998888764 35699999995
No 257
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.87 E-value=2.5e-05 Score=80.89 Aligned_cols=63 Identities=21% Similarity=0.334 Sum_probs=52.9
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++++||...+..+.+.|.+.+.. .+.-+|++||..
T Consensus 159 ~~LS~Gq~qrv~lAral~~----~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiii~tH~~ 221 (269)
T cd03294 159 DELSGGMQQRVGLARALAV----DPDILLMDEAFSALDPLIRREMQDELLRLQAE-LQKTIVFITHDL 221 (269)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 3599999999999998873 46899999999999999999999998887541 256788999984
No 258
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=2.7e-05 Score=81.43 Aligned_cols=63 Identities=22% Similarity=0.411 Sum_probs=54.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. +.|+++|||++++||+.++..+.+.|.++.. ..+..+|++||+.
T Consensus 144 ~~LSgGq~qrv~laraL~~----~p~illlDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tvl~vtH~~ 206 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAM----NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT-DENKTIILVSHDM 206 (286)
T ss_pred ccCCHHHHHHHHHHHHHHh----CCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hCCCEEEEEecCH
Confidence 4599999999999998885 3589999999999999999999998888753 1368999999994
No 259
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.87 E-value=2.9e-05 Score=80.62 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||..++..+.++|.+... ..-+|++||+.
T Consensus 160 ~~LSgGq~qrv~LAraL~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tiii~sH~~ 220 (274)
T PRK14265 160 TALSGGQQQRLCIARAIAM----KPDVLLMDEPCSALDPISTRQVEELCLELKE---QYTIIMVTHNM 220 (274)
T ss_pred ccCCHHHHHHHHHHHHHhh----CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 4599999999999988863 4689999999999999999999999988754 46799999995
No 260
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.87 E-value=2.7e-05 Score=81.43 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=52.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. +.++++|||++.+||......+.+.|.+.+. ..-+|++||+.
T Consensus 181 ~~LSgGq~qrv~LAraL~~----~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~---~~tvIivsH~~ 241 (286)
T PRK14275 181 LGLSGGQQQRLCVARTLAV----EPEILLLDEPTSALDPKATAKIEDLIQELRG---SYTIMIVTHNM 241 (286)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCH
Confidence 3499999999999988774 3589999999999999999999998887754 46899999984
No 261
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.87 E-value=2.7e-05 Score=80.24 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=53.5
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..|||||+.+++||..++. +.++++|||++++||..+...+.+.|.+.+. ..-+|++||+.
T Consensus 146 ~~~LS~Gq~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~vsH~~ 207 (252)
T PRK14255 146 ALSLSGGQQQRVCIARVLAV----KPDVILLDEPTSALDPISSTQIENMLLELRD---QYTIILVTHSM 207 (252)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHHh---CCEEEEEECCH
Confidence 34599999999999988774 4579999999999999999999999988764 46899999984
No 262
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.87 E-value=2.7e-05 Score=80.26 Aligned_cols=62 Identities=16% Similarity=0.270 Sum_probs=53.3
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..|||||+.+++||..|+. +.|+++|||++++||..++..+.+.|.+.+. ..-+|++||+.
T Consensus 146 ~~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~ 207 (252)
T PRK14272 146 ATGLSGGQQQRLCIARALAV----EPEILLMDEPTSALDPASTARIEDLMTDLKK---VTTIIIVTHNM 207 (252)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCH
Confidence 34599999999999987774 3589999999999999999999999988753 57899999984
No 263
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.87 E-value=2.5e-05 Score=80.41 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=52.9
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++.+||..++..+.+.|...+. ...+|++||+.
T Consensus 148 ~~LS~G~~qrv~laral~~----~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~---~~tvii~sh~~ 208 (253)
T PRK14261 148 LSLSGGQQQRLCIARTLAV----NPEVILMDEPCSALDPIATAKIEDLIEDLKK---EYTVIIVTHNM 208 (253)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHhh---CceEEEEEcCH
Confidence 3599999999999887775 3689999999999999999999998888764 47899999984
No 264
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.87 E-value=1.3e-05 Score=78.63 Aligned_cols=116 Identities=22% Similarity=0.256 Sum_probs=59.8
Q ss_pred EEEecC-CceeEEEcCCCCChhHHHHHHHHHhcCCCcccccccchhh---hhhcCCceeEEEEEEEeCCCCceEEEEEEE
Q 001581 37 LICKPG-SRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGA---YVKRGEESGYIKISLRGDTKEEHLTIMRKI 112 (1050)
Q Consensus 37 ~~i~f~-~~~~~I~G~NGsGKSti~~Ai~~~L~g~~~~~~r~~~~~~---~i~~g~~~a~v~i~~~~~~~~~~~~i~R~~ 112 (1050)
.++.+. ..++.|+|||||||||++.+|.-.|- |. .|+-.-... -.+.+..-|||-=.+.. +.+-+++|.+.+
T Consensus 23 i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~-~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~-d~~fP~tV~d~V 98 (254)
T COG1121 23 ISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PS-SGEIKIFGKPVRKRRKRLRIGYVPQKSSV-DRSFPITVKDVV 98 (254)
T ss_pred cEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CC-cceEEEccccccccccCCeEEEcCccccc-CCCCCcCHHHHH
Confidence 344443 35999999999999999999876553 11 111000000 00112334666543322 234556666554
Q ss_pred ecC--CceeEEECCeecCHHHHHHHHHHcCcc--cccccccccchhhH
Q 001581 113 DTR--NKSEWFFNGKVVPKGEVLEITKRFNIQ--VNNLTQFLPQDRVC 156 (1050)
Q Consensus 113 ~~~--~~~~~~~~g~~~~~~~~~~~~~~~~i~--~~~~~~~l~q~~~~ 156 (1050)
..+ +...|+-.-.+.....+.+.|...|+. .+.+..-|+.|+..
T Consensus 99 ~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~Q 146 (254)
T COG1121 99 LLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQ 146 (254)
T ss_pred HccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHH
Confidence 442 112222111223356788888888875 33444556655543
No 265
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=2.6e-05 Score=81.94 Aligned_cols=63 Identities=19% Similarity=0.355 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||+.++..+.+.|.+.+. ..+.-+|++||..
T Consensus 149 ~~LS~Gq~qrv~laral~~----~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiiiisH~~ 211 (289)
T PRK13645 149 FELSGGQKRRVALAGIIAM----DGNTLVLDEPTGGLDPKGEEDFINLFERLNK-EYKKRIIMVTHNM 211 (289)
T ss_pred hhCCHHHHHHHHHHHHHHh----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCH
Confidence 4599999999999987774 3579999999999999999999998887754 1256899999984
No 266
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=97.87 E-value=2.4e-05 Score=83.14 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=53.7
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. +.++++|||++++||..++..+.+.|.+... ..+.-+|++||+.
T Consensus 99 ~~LSgGq~qRvalaraL~~----~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~-~~g~tiiivTHd~ 161 (325)
T TIGR01187 99 HQLSGGQQQRVALARALVF----KPKILLLDEPLSALDKKLRDQMQLELKTIQE-QLGITFVFVTHDQ 161 (325)
T ss_pred hhCCHHHHHHHHHHHHHHh----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4599999999999998874 4689999999999999999999998888754 2356899999984
No 267
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.86 E-value=2.5e-05 Score=80.47 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=53.3
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..|||||+.+++||..|+. +.|+++|||++++||+.+...+.+.|.+.+. ..-+|++||..
T Consensus 147 ~~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~ 208 (253)
T PRK14267 147 PSNLSGGQRQRLVIARALAM----KPKILLMDEPTANIDPVGTAKIEELLFELKK---EYTIVLVTHSP 208 (253)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHhh---CCEEEEEECCH
Confidence 34599999999999987764 4589999999999999999999999988764 47899999984
No 268
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.86 E-value=2.5e-05 Score=82.81 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=54.2
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
++.|||||+.+++||..|+.. .+++|+||.+.+||..+...++++|.++.. ..+.-+|+|||+.
T Consensus 152 p~~LSgGq~QRv~iArAL~~~----P~lLilDEPts~LD~~~~~~i~~lL~~l~~-~~g~til~iTHdl 215 (327)
T PRK11308 152 PHMFSGGQRQRIAIARALMLD----PDVVVADEPVSALDVSVQAQVLNLMMDLQQ-ELGLSYVFISHDL 215 (327)
T ss_pred CccCCHHHHHHHHHHHHHHcC----CCEEEEECCCccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCH
Confidence 345999999999999988852 469999999999999999999999988754 2356899999994
No 269
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.86 E-value=2.9e-05 Score=84.94 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=52.9
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..|+. +.|+++|||++++||+..+..+++.|.+.+. .+.-+|++||..
T Consensus 142 ~~LSGGQrQRVaLArAL~~----~P~LLLLDEPTsgLD~~sr~~LlelL~el~~--~G~TIIIVSHdl 203 (549)
T PRK13545 142 KTYSSGMKSRLGFAISVHI----NPDILVIDEALSVGDQTFTKKCLDKMNEFKE--QGKTIFFISHSL 203 (549)
T ss_pred ccCCHHHHHHHHHHHHHHh----CCCEEEEECCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEECCH
Confidence 3499999999999998885 4689999999999999999999999887754 256788899984
No 270
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.86 E-value=2.8e-05 Score=78.27 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.++++|||++++||+.+...+.+.|.+.... .+.-+|++||+.
T Consensus 136 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sh~~ 198 (225)
T PRK10247 136 AELSGGEKQRISLIRNLQF----MPKVLLLDEITSALDESNKHNVNEIIHRYVRE-QNIAVLWVTHDK 198 (225)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCh
Confidence 4599999999999887774 46899999999999999999999988887541 256799999885
No 271
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.86 E-value=3.1e-05 Score=80.07 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.++++|||++++||..++..+.++|.+.+. ..-+|++||+.
T Consensus 150 ~~LSgGq~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tvi~vtH~~ 210 (264)
T PRK14243 150 LSLSGGQQQRLCIARAIAV----QPEVILMDEPCSALDPISTLRIEELMHELKE---QYTIIIVTHNM 210 (264)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEecCH
Confidence 4599999999999998874 3579999999999999999999999988764 46899999984
No 272
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.85 E-value=3.4e-05 Score=70.92 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=49.0
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
|||||+.+++||..++. +.|+++|||++.+||..++..+.+.|.+. ...+|++||+.
T Consensus 71 lS~G~~~rv~laral~~----~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~ 127 (144)
T cd03221 71 LSGGEKMRLALAKLLLE----NPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDR 127 (144)
T ss_pred CCHHHHHHHHHHHHHhc----CCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCH
Confidence 99999999999887763 46899999999999999999999888754 34789999984
No 273
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.85 E-value=2.9e-05 Score=81.96 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++.|||..+...+.+.|.+.+. ...+|++||+.
T Consensus 199 ~~LSgGq~qrv~LAraL~~----~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~---~~tiiivtH~~ 259 (305)
T PRK14264 199 LGLSGGQQQRLCIARCLAV----DPEVILMDEPASALDPIATSKIEDLIEELAE---EYTVVVVTHNM 259 (305)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcCH
Confidence 3499999999999998874 4689999999999999999999999988765 46799999984
No 274
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.85 E-value=2.4e-05 Score=80.01 Aligned_cols=63 Identities=19% Similarity=0.335 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++.+||..++..+.+.|.+.+. ..+.-+|++||+.
T Consensus 134 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~g~tvii~sH~~ 196 (242)
T cd03295 134 HELSGGQQQRVGVARALAA----DPPLLLMDEPFGALDPITRDQLQEEFKRLQQ-ELGKTIVFVTHDI 196 (242)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEecCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEecCH
Confidence 4599999999998887773 5689999999999999999999999988764 1256799999985
No 275
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.85 E-value=2.7e-05 Score=82.68 Aligned_cols=63 Identities=19% Similarity=0.288 Sum_probs=53.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||-.|+. +.+++++||++++||+.++..+.++|.+... ..+.-+|+|||..
T Consensus 139 ~~LSgGqkQRV~IARAL~~----~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~-~~g~tiiliTH~~ 201 (343)
T TIGR02314 139 SNLSGGQKQRVAIARALAS----NPKVLLCDEATSALDPATTQSILELLKEINR-RLGLTILLITHEM 201 (343)
T ss_pred hhCCHHHHHHHHHHHHHHh----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4599999999999998884 3579999999999999999999999988764 2256799999984
No 276
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.85 E-value=2.9e-05 Score=78.80 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++++||+.++..+.+.|.+.+. ..+.-+|++||+.
T Consensus 130 ~~LS~G~~qrv~la~al~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~ 192 (230)
T TIGR03410 130 GDLSGGQQQQLAIARALVT----RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA-EGGMAILLVEQYL 192 (230)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEecCCcccCCHHHHHHHHHHHHHHHH-cCCcEEEEEeCCH
Confidence 3599999999999887774 4689999999999999999999998887754 1256899999984
No 277
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.85 E-value=3.5e-05 Score=79.39 Aligned_cols=61 Identities=23% Similarity=0.295 Sum_probs=52.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+ .+.++++|||++++||..+...+.++|.+... .+.+|++||+.
T Consensus 148 ~~LS~G~~qrv~laral~----~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~---~~tii~isH~~ 208 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIA----TEPEVLLLDEPCSALDPIATRRVEELMVELKK---DYTIALVTHNM 208 (261)
T ss_pred ccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCH
Confidence 359999999999888776 35689999999999999999999999988753 57899999984
No 278
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.85 E-value=2.8e-05 Score=80.73 Aligned_cols=61 Identities=18% Similarity=0.286 Sum_probs=52.8
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||...+..+.+.|.+... ..-+|++||+.
T Consensus 163 ~~LSgGq~qrl~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~ 223 (268)
T PRK14248 163 LSLSGGQQQRLCIARTLAM----KPAVLLLDEPASALDPISNAKIEELITELKE---EYSIIIVTHNM 223 (268)
T ss_pred ccCCHHHHHHHHHHHHHhC----CCCEEEEcCCCcccCHHHHHHHHHHHHHHhc---CCEEEEEEeCH
Confidence 4599999999999998873 4689999999999999999999999988754 46799999994
No 279
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.85 E-value=3.3e-05 Score=79.54 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=53.5
Q ss_pred cccCchhHHHHHHHHHHHhcc--cCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQD--LTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~--~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+..- -.+.++++|||++++||+.+...+.+.|.+.+.. .+.-+|++||..
T Consensus 133 ~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~ 201 (258)
T PRK13548 133 PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE-RGLAVIVVLHDL 201 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCH
Confidence 459999999999999887311 0235799999999999999999999999887621 256788899884
No 280
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.85 E-value=2.8e-05 Score=83.01 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=53.3
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.|||||+.+++||-.++. +.|+++|||++++||+..+..+.+.|.++.. ..+.-+||+||..
T Consensus 129 ~LSGGq~QRV~lARAL~~----~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~-~~~~Tii~vTHd~ 190 (363)
T TIGR01186 129 ELSGGMQQRVGLARALAA----EPDILLMDEAFSALDPLIRDSMQDELKKLQA-TLQKTIVFITHDL 190 (363)
T ss_pred hCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 599999999999998873 4689999999999999999999999987753 2256799999995
No 281
>PRK11637 AmiB activator; Provisional
Probab=97.85 E-value=0.01 Score=66.10 Aligned_cols=75 Identities=12% Similarity=0.185 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 618 EIERLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESI 692 (1050)
Q Consensus 618 ~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~l~~l 692 (1050)
.+..+..++..++.++..++.++..+..++..+..++..+..++..+..++..+..++..++.+|..++..+...
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666665555555555555555555555555555555555555555555555555555544443
No 282
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.84 E-value=3.7e-05 Score=76.43 Aligned_cols=61 Identities=13% Similarity=0.167 Sum_probs=52.9
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++.+||+.....+.++|.+... +.-+|++||+.
T Consensus 124 ~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~th~~ 184 (207)
T cd03369 124 LNLSQGQRQLLCLARALLK----RPRVLVLDEATASIDYATDALIQKTIREEFT---NSTILTIAHRL 184 (207)
T ss_pred CcCCHHHHHHHHHHHHHhh----CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC---CCEEEEEeCCH
Confidence 4599999999999988863 4689999999999999999999998887642 67899999984
No 283
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.84 E-value=2.9e-05 Score=79.89 Aligned_cols=63 Identities=21% Similarity=0.320 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.++++|||++++||..+...+.+.|.+... ..+..+|++||..
T Consensus 145 ~~LS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~ 207 (252)
T TIGR03005 145 AQLSGGQQQRVAIARALAM----RPKVMLFDEVTSALDPELVGEVLNVIRRLAS-EHDLTMLLVTHEM 207 (252)
T ss_pred hhcCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCH
Confidence 3499999999999998873 4579999999999999999999998887754 1357899999984
No 284
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=2.7e-05 Score=83.38 Aligned_cols=63 Identities=21% Similarity=0.290 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..|+. +.|+++|||++++||+.++..+.++|.+... ..+.-+|++||..
T Consensus 139 ~~LSgGq~qRv~lAraL~~----~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~-~~g~tiilvtH~~ 201 (343)
T PRK11153 139 AQLSGGQKQRVAIARALAS----NPKVLLCDEATSALDPATTRSILELLKDINR-ELGLTIVLITHEM 201 (343)
T ss_pred hhCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4599999999999988774 4689999999999999999999999988754 1246789999984
No 285
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.84 E-value=3.8e-05 Score=77.51 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=53.5
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..|||||+.+++||..++. +.++++|||++++||+.....+.+.|.+.... ..-+|++||+.
T Consensus 141 ~~~LS~G~~qrl~laral~~----~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~--~~tiii~sh~~ 203 (226)
T cd03234 141 VKGISGGERRRVSIAVQLLW----DPKVLILDEPTSGLDSFTALNLVSTLSQLARR--NRIVILTIHQP 203 (226)
T ss_pred ccCcCHHHHHHHHHHHHHHh----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCC
Confidence 34599999999999998875 46899999999999999999999988877542 56888888985
No 286
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=3.3e-05 Score=78.82 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=52.3
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. +.++++|||++.+||+.+...+.++|.+... +.-+|++||+.
T Consensus 136 ~~LS~G~~~rl~la~aL~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sh~~ 196 (236)
T cd03253 136 LKLSGGEKQRVAIARAILK----NPPILLLDEATSALDTHTEREIQAALRDVSK---GRTTIVIAHRL 196 (236)
T ss_pred CcCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC---CCEEEEEcCCH
Confidence 4599999999999887774 3589999999999999999999998887653 56789999885
No 287
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=3.1e-05 Score=79.97 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.++++|||++.+||..++..+.++|.+... ..+.-+|++||+.
T Consensus 152 ~~LS~G~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tii~~sH~~ 214 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVT----QPEILMLDEPAAGLNPKETKELDELIAELRN-EHNVTVLLIEHDM 214 (255)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCccCCCHHHHHHHHHHHHHHHh-hcCCEEEEEeCCH
Confidence 4599999999999987774 3589999999999999999999999988754 2257899999984
No 288
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.84 E-value=2.7e-05 Score=80.06 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=53.3
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++++||..+...+.+.|.+.+. +.-+|++||+.
T Consensus 145 ~~LS~Gq~qrv~laral~~----~p~llllDEP~~gLD~~~~~~l~~~l~~~~~---~~tiii~sh~~ 205 (250)
T PRK14266 145 LGLSGGQQQRLCIARTIAV----SPEVILMDEPCSALDPISTTKIEDLIHKLKE---DYTIVIVTHNM 205 (250)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEECCH
Confidence 4599999999999988874 4589999999999999999999999988753 67899999985
No 289
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.83 E-value=3.2e-05 Score=79.58 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=52.8
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.++++|||++.+||+.+...+.+.|.+... ..-+|++||+.
T Consensus 146 ~~LS~Gq~qr~~laral~~----~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiiiisH~~ 206 (251)
T PRK14251 146 QAFSGGQQQRICIARALAV----RPKVVLLDEPTSALDPISSSEIEETLMELKH---QYTFIMVTHNL 206 (251)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEecCCCccCCHHHHHHHHHHHHHHHc---CCeEEEEECCH
Confidence 4599999999999887773 5689999999999999999999999988753 46799999985
No 290
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.83 E-value=2.3e-05 Score=83.40 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=38.4
Q ss_pred ccccccccCCCCCCCCceEEEEEEeccccc---ceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 5 RVKRLKVSRGEDDYMPGNIIEIELHNFMTF---DHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~~l~l~nF~~~---~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+-|+++|+.+ ..+.+..|..|... |+.+ .+.++.+.+| +.+|+|||||||||++..|+..+
T Consensus 27 ~~~~~~~~~~-~~~~~i~i~nl~k~-y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 27 SEAKASIPGS-MSTVAIDLAGVSKS-YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred ccCchhhccc-CCceeEEEEEEEEE-ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4577788875 22333344444332 3222 2444555544 99999999999999999997443
No 291
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.83 E-value=2.3e-05 Score=83.58 Aligned_cols=64 Identities=20% Similarity=0.316 Sum_probs=54.1
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
++.||||++.+++||..|+. +.+++|+||++++||......+.++|.++.. ..+.-+|||||+.
T Consensus 156 p~~LSgG~~QRv~iArAL~~----~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~g~tii~itHdl 219 (330)
T PRK15093 156 PYELTEGECQKVMIAIALAN----QPRLLIADEPTNAMEPTTQAQIFRLLTRLNQ-NNNTTILLISHDL 219 (330)
T ss_pred chhCCHHHHHHHHHHHHHHC----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCH
Confidence 34699999999999998875 2579999999999999999999999988754 2356799999994
No 292
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=2e-05 Score=84.48 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=53.5
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. +.++++|||++++||...+..+...|.++.. ..+.-+|++||+.
T Consensus 133 ~~LSgGq~QRvalARAL~~----~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tii~vTHd~ 195 (356)
T PRK11650 133 RELSGGQRQRVAMGRAIVR----EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR-RLKTTSLYVTHDQ 195 (356)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4599999999999998873 3578999999999999999999998887654 2357899999984
No 293
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.83 E-value=2.4e-05 Score=83.10 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=54.1
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
++.|||||+.+++||..++. . -+++|+||++.+||..+...+++.|.++.. ..+.=+|||||+.
T Consensus 159 p~~LSgG~~QRv~IArAL~~---~-P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~g~til~iTHdl 222 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLC---R-PKLLIADEPTTALDVTVQAQIMTLLNELKR-EFNTAIIMITHDL 222 (330)
T ss_pred cccCCHHHHHHHHHHHHHHc---C-CCEEEEeCCCccCCHHHHHHHHHHHHHHHH-HcCCEEEEEECCH
Confidence 34599999999999998885 2 479999999999999999999998888754 2356799999995
No 294
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.83 E-value=2.6e-05 Score=75.30 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=55.1
Q ss_pred cccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 935 SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 935 ~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
-+++||||.|.++|||=-++.. -+..+|||.+.+||...+..+.+.|.++-.. ...=+++|||..
T Consensus 127 ~P~qLSGGMrQRVaiARAL~~~----P~lLLlDEPFgALDalTR~~lq~~l~~lw~~-~~~TvllVTHdi 191 (248)
T COG1116 127 YPHQLSGGMRQRVAIARALATR----PKLLLLDEPFGALDALTREELQDELLRLWEE-TRKTVLLVTHDV 191 (248)
T ss_pred CccccChHHHHHHHHHHHHhcC----CCEEEEcCCcchhhHHHHHHHHHHHHHHHHh-hCCEEEEEeCCH
Confidence 4578999999999999988742 3478999999999999999999999987652 456799999994
No 295
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.83 E-value=3.7e-05 Score=79.14 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=52.2
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.|||||+.+++||-.++. +.|+++|||++++||...+..+.+.|..... .+.-+|++||+.
T Consensus 145 ~LS~G~~qrv~laral~~----~p~illLDEPt~~LD~~~~~~l~~~l~~l~~--~~~tiii~sH~~ 205 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVL----EPELCILDESDSGLDIDALKIVADGVNSLRD--GKRSFIIVTHYQ 205 (248)
T ss_pred CCCHHHHHHHHHHHHHHc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 499999999999987774 4589999999999999999999988877754 256799999984
No 296
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.83 E-value=3.6e-05 Score=79.41 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||..++..+.+.|.+... .+.-+|++||+.
T Consensus 136 ~~LS~G~~qrl~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~ 197 (256)
T TIGR03873 136 STLSGGERQRVHVARALAQ----EPKLLLLDEPTNHLDVRAQLETLALVRELAA--TGVTVVAALHDL 197 (256)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCccccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCH
Confidence 4599999999999998875 3689999999999999999999999888754 256789999884
No 297
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.83 E-value=3.7e-05 Score=68.76 Aligned_cols=76 Identities=16% Similarity=0.304 Sum_probs=61.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCe--
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEAC-- 1014 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~~-- 1014 (1050)
..||||+..++|+|-.+|+. |. ..+|||.+.+|||.=+..+++.|-++|.. .+=.+++||.+ .|..++
T Consensus 151 ~~LSGGQQQR~aIARaLame---P~-vmLFDEPTSALDPElVgEVLkv~~~LAeE--grTMv~VTHEM----~FAR~Vss 220 (256)
T COG4598 151 AHLSGGQQQRVAIARALAME---PE-VMLFDEPTSALDPELVGEVLKVMQDLAEE--GRTMVVVTHEM----GFARDVSS 220 (256)
T ss_pred cccCchHHHHHHHHHHHhcC---Cc-eEeecCCcccCCHHHHHHHHHHHHHHHHh--CCeEEEEeeeh----hHHHhhhh
Confidence 35999999999999999974 22 46899999999999999999999999874 77899999997 444455
Q ss_pred EEEEEecC
Q 001581 1015 SILNIMNG 1022 (1050)
Q Consensus 1015 ~~~~~~~~ 1022 (1050)
.|++.++|
T Consensus 221 ~v~fLh~G 228 (256)
T COG4598 221 HVIFLHQG 228 (256)
T ss_pred heEEeecc
Confidence 34444565
No 298
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.82 E-value=3.2e-05 Score=83.66 Aligned_cols=63 Identities=21% Similarity=0.340 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+... ..+.-+|++||..
T Consensus 163 ~~LSgGq~QRv~LArAL~~----~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~-~~g~TIIivTHd~ 225 (400)
T PRK10070 163 DELSGGMRQRVGLARALAI----NPDILLMDEAFSALDPLIRTEMQDELVKLQA-KHQRTIVFISHDL 225 (400)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEECCCccCCHHHHHHHHHHHHHHHH-HCCCeEEEEECCH
Confidence 3599999999999998874 3689999999999999999999999987753 1256789999984
No 299
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.82 E-value=3.8e-05 Score=79.51 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=53.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. +.++++|||++.+||..++..+.+.|.+.+. ..+.-+|++||+.
T Consensus 142 ~~LS~Gq~qrv~laral~~----~p~llllDEPt~gLD~~~~~~l~~~L~~l~~-~~~~tiii~tH~~ 204 (265)
T PRK10253 142 DTLSGGQRQRAWIAMVLAQ----ETAIMLLDEPTTWLDISHQIDLLELLSELNR-EKGYTLAAVLHDL 204 (265)
T ss_pred ccCChHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4599999999999998874 4689999999999999999999999988754 1256899999985
No 300
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.81 E-value=3.7e-05 Score=79.31 Aligned_cols=60 Identities=22% Similarity=0.339 Sum_probs=52.5
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
|||||+.+++||..++. +.|+++|||++++||..++..+.+.|.+.+. .+.-+|++||+.
T Consensus 152 LSgG~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tii~~tH~~ 211 (252)
T CHL00131 152 FSGGEKKRNEILQMALL----DSELAILDETDSGLDIDALKIIAEGINKLMT--SENSIILITHYQ 211 (252)
T ss_pred CCHHHHHHHHHHHHHHc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCH
Confidence 89999999999998874 4689999999999999999999999988764 267899999984
No 301
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.81 E-value=3.8e-05 Score=80.48 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=53.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. ..++.+|||++++||+.....+.+.|.+.+. ..+.-+|++||+.
T Consensus 144 ~~LSgGq~qrv~lAraL~~----~P~llllDEPt~~LD~~~~~~l~~~L~~l~~-~~g~tviiitHd~ 206 (290)
T PRK13634 144 FELSGGQMRRVAIAGVLAM----EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK-EKGLTTVLVTHSM 206 (290)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4599999999999998874 3689999999999999999999999888754 1256799999994
No 302
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.81 E-value=3.5e-05 Score=79.26 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.++. +.|+++|||++++||..++..+.+.|.+.+. ..+.-+|++||+.
T Consensus 139 ~~LS~Gq~qrv~laral~~----~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~-~~g~til~~sH~~ 201 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLC----EAPFIIADEPTTDLDVVAQARILDLLESIVQ-KRALGMLLVTHDM 201 (254)
T ss_pred cccCHHHHHHHHHHHHHhc----CCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-hcCcEEEEEecCH
Confidence 4599999999999988873 3589999999999999999999998888754 1357899999984
No 303
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.81 E-value=0.047 Score=54.46 Aligned_cols=16 Identities=0% Similarity=0.142 Sum_probs=7.7
Q ss_pred HHHHHHhcCCcceEEE
Q 001581 891 TFSRNFQEMAVAGEVS 906 (1050)
Q Consensus 891 ~f~~~f~~l~~~g~~~ 906 (1050)
.-..+|.++-.|-.+.
T Consensus 266 ra~ei~EKfk~GekLt 281 (294)
T COG1340 266 RAEEIYEKFKRGEKLT 281 (294)
T ss_pred HHHHHHHHHhCCCCCC
Confidence 4444555554444333
No 304
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.81 E-value=4.4e-05 Score=79.96 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=53.3
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..|+. . .|+++|||++++||+.++..+.+.|.+... .+.-+|++||..
T Consensus 144 ~~LSgGq~qrl~laral~~---~-p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvlivsH~~ 205 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAY---E-PEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVILVTHNM 205 (287)
T ss_pred ccCCHHHHHHHHHHHHHHc---C-CCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 4599999999999998885 2 479999999999999999999998887754 367899999984
No 305
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.80 E-value=3.9e-05 Score=79.25 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=52.9
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||+.+...+.+.|...+. ..+.-+|++||+.
T Consensus 150 ~~LS~Gq~qrl~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~isH~~ 212 (258)
T PRK11701 150 TTFSGGMQQRLQIARNLVT----HPRLVFMDEPTGGLDVSVQARLLDLLRGLVR-ELGLAVVIVTHDL 212 (258)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCH
Confidence 3599999999999988863 5689999999999999999999998887654 2256789999984
No 306
>PRK13409 putative ATPase RIL; Provisional
Probab=97.80 E-value=2.5e-05 Score=89.87 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=53.8
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||+++|||..++..+.+.|.+++.+ .+.=+|+|||+.
T Consensus 452 ~~LSGGe~QRvaiAraL~~----~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tviivsHD~ 514 (590)
T PRK13409 452 KDLSGGELQRVAIAACLSR----DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEE-REATALVVDHDI 514 (590)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCH
Confidence 4599999999999988773 57899999999999999999999999887652 245689999984
No 307
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=4.1e-05 Score=79.54 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=53.9
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. +.++++|||++++||+.++..+.+.|.+.+.. +.-+|++||..
T Consensus 137 ~~LSgG~~qrv~laraL~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--g~tili~tH~~ 198 (274)
T PRK13647 137 YHLSYGQKKRVAIAGVLAM----DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ--GKTVIVATHDV 198 (274)
T ss_pred hhCCHHHHHHHHHHHHHHc----CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 3599999999999998885 35799999999999999999999999887652 67899999994
No 308
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.80 E-value=3e-05 Score=76.63 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=58.9
Q ss_pred cccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCC
Q 001581 935 SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEA 1013 (1050)
Q Consensus 935 ~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~ 1013 (1050)
.+..||||||.++.+|-.|| ..+|+.+|||++.+||..|--.+++.+.+++. ..+.=+|+++|..=.-..|.+.
T Consensus 135 ~~~~LSGGerQrv~iArALa----Q~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~-~~~~tvv~vlHDlN~A~ryad~ 208 (258)
T COG1120 135 PVDELSGGERQRVLIARALA----QETPILLLDEPTSHLDIAHQIEVLELLRDLNR-EKGLTVVMVLHDLNLAARYADH 208 (258)
T ss_pred cccccChhHHHHHHHHHHHh----cCCCEEEeCCCccccCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCE
Confidence 45779999999999998887 34889999999999999999999999998875 2345577777875233456554
No 309
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=4.1e-05 Score=79.47 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+... ..+.-+|++||+.
T Consensus 141 ~~LS~G~~qrl~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tiiivtH~~ 203 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLAL----NPSVIILDEATSMLDPDARQNLLDLVRKVKS-EHNITIISITHDL 203 (269)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCc
Confidence 3599999999998887774 4689999999999999999999999987754 2256789999984
No 310
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.80 E-value=3.9e-05 Score=78.98 Aligned_cols=62 Identities=19% Similarity=0.271 Sum_probs=53.3
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..|||||+.+++||-.|+. +.|+++|||++.+||..++..+.++|.+.+. ...+|++||+.
T Consensus 146 ~~~LS~G~~qrl~laral~~----~p~llllDEP~~gLD~~~~~~l~~~l~~~~~---~~tiiivsH~~ 207 (252)
T PRK14256 146 AMELSGGQQQRLCIARTIAV----KPEVILMDEPASALDPISTLKIEELIEELKE---KYTIIIVTHNM 207 (252)
T ss_pred cCcCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCcEEEEECCH
Confidence 34599999999999988763 3489999999999999999999999888764 47899999985
No 311
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.80 E-value=3.9e-05 Score=79.18 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=52.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||..+...+.+.|.+.+. ..-+|++||+.
T Consensus 149 ~~LS~G~~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~ 209 (259)
T PRK14260 149 LGLSGGQQQRLCIARALAI----KPKVLLMDEPCSALDPIATMKVEELIHSLRS---ELTIAIVTHNM 209 (259)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 4599999999999888763 4689999999999999999999999988754 46799999984
No 312
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=4e-05 Score=79.74 Aligned_cols=62 Identities=23% Similarity=0.405 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.|+++|||++++||..+...+.+.|.+... .+.-+|++||+.
T Consensus 136 ~~LS~Gq~qrv~laral~~----~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~~til~vtH~~ 197 (275)
T PRK13639 136 HHLSGGQKKRVAIAGILAM----KPEIIVLDEPTSGLDPMGASQIMKLLYDLNK--EGITIIISTHDV 197 (275)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCH
Confidence 3599999999999988764 4689999999999999999999999988764 256799999984
No 313
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.80 E-value=4.4e-05 Score=67.54 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=51.0
Q ss_pred cccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 935 SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 935 ~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.+..|||||+.+.||+=-+- ++|. +.+|||++++||+.|.+.+-++|..... ..+.=++-|||..
T Consensus 130 ~it~lSGGE~QriAliR~Lq---~~P~-ILLLDE~TsALD~~nkr~ie~mi~~~v~-~q~vAv~WiTHd~ 194 (223)
T COG4619 130 NITELSGGEKQRIALIRNLQ---FMPK-ILLLDEITSALDESNKRNIEEMIHRYVR-EQNVAVLWITHDK 194 (223)
T ss_pred hhhhccchHHHHHHHHHHhh---cCCc-eEEecCchhhcChhhHHHHHHHHHHHhh-hhceEEEEEecCh
Confidence 35669999999998875442 5554 5699999999999999998888877653 2467789999985
No 314
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.80 E-value=4.5e-05 Score=77.98 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=53.6
Q ss_pred cccCchhHHHHHHHHHHHhc-c-cC-CCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQ-D-LT-NCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~-~-~~-~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+.. . .. +.++++|||++.+||+.++..+.+.|.+.+. .+.-+|++||+.
T Consensus 125 ~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~--~~~tvi~~sH~~ 193 (248)
T PRK03695 125 NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ--QGIAVVMSSHDL 193 (248)
T ss_pred ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCH
Confidence 45999999999999988741 1 12 3579999999999999999999998888764 256799999984
No 315
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.79 E-value=4.4e-05 Score=79.17 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++.+||......+.+.|.+.+. ..-+|++||+.
T Consensus 160 ~~LS~G~~qrv~laral~~----~p~llllDEPt~gLD~~~~~~l~~~l~~l~~---~~tiiivth~~ 220 (265)
T PRK14252 160 FNLSGGQQQRLCIARALAT----DPEILLFDEPTSALDPIATASIEELISDLKN---KVTILIVTHNM 220 (265)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCEEEEEecCH
Confidence 4599999999999887774 4689999999999999999999999988754 57899999984
No 316
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.79 E-value=4e-05 Score=79.64 Aligned_cols=63 Identities=21% Similarity=0.329 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||+++|||+.++..++++|.+.+. ..+.-+|++||..
T Consensus 141 ~~LS~G~~qrl~laral~~----~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~ 203 (271)
T PRK13632 141 QNLSGGQKQRVAIASVLAL----NPEIIIFDESTSMLDPKGKREIKKIMVDLRK-TRKKTLISITHDM 203 (271)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEEech
Confidence 4599999999999887773 4689999999999999999999999988764 1247899999985
No 317
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.79 E-value=5.6e-05 Score=76.41 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+... .+.++++|||++++||+.....+.+.|.++... +.-+|++||+.
T Consensus 168 ~~LSgGe~QRl~LAraL~~~~-~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~--g~tvIiitH~~ 232 (261)
T cd03271 168 TTLSGGEAQRIKLAKELSKRS-TGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK--GNTVVVIEHNL 232 (261)
T ss_pred ccCCHHHHHHHHHHHHHhcCC-CCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence 349999999999999887421 124689999999999999999999988877642 55699999985
No 318
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.79 E-value=4.4e-05 Score=79.11 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||..+...+.+.|.+.+. ..+.-+|++||+.
T Consensus 150 ~~LS~Ge~qrl~laral~~----~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tiiivsH~~ 212 (268)
T PRK10419 150 PQLSGGQLQRVCLARALAV----EPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ-QFGTACLFITHDL 212 (268)
T ss_pred ccCChHHHHHHHHHHHHhc----CCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-HcCcEEEEEECCH
Confidence 3489999999999998874 3579999999999999999999998887754 2267899999994
No 319
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.79 E-value=3.1e-05 Score=89.22 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=53.9
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..||||||.+++||-.|+. +.++++|||++++||+.+...+.++|.+.+.. .+.=+|+|||..
T Consensus 166 ~~~LSgGq~qrv~iA~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tviivtHd~ 229 (520)
T TIGR03269 166 ARDLSGGEKQRVVLARQLAK----EPFLFLADEPTGTLDPQTAKLVHNALEEAVKA-SGISMVLTSHWP 229 (520)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCH
Confidence 34599999999999998874 46799999999999999999999988887542 245699999984
No 320
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.79 E-value=3.8e-05 Score=87.93 Aligned_cols=62 Identities=21% Similarity=0.329 Sum_probs=53.8
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..++. +.++++|||+++|||..++..+.+.|.+.+.. +.-+|++||+.
T Consensus 402 ~~LSgG~kqrl~la~al~~----~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~--g~tiIivsHd~ 463 (510)
T PRK15439 402 RTLSGGNQQKVLIAKCLEA----SPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ--NVAVLFISSDL 463 (510)
T ss_pred ccCCcHHHHHHHHHHHHhh----CCCEEEECCCCcCcChhHHHHHHHHHHHHHhC--CCEEEEECCCH
Confidence 4599999999999998874 47899999999999999999999998887652 56799999984
No 321
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.79 E-value=4.5e-05 Score=79.00 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=52.5
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.++. +.++++|||++++||+.++..+.+.|.+... ...+|++||+.
T Consensus 162 ~~LS~G~~qrl~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~ 222 (267)
T PRK14237 162 LTLSGGQQQRLCIARAIAV----KPDILLMDEPASALDPISTMQLEETMFELKK---NYTIIIVTHNM 222 (267)
T ss_pred ccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEecCH
Confidence 3599999999998887774 4579999999999999999999998888753 57899999984
No 322
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.79 E-value=4.3e-05 Score=79.60 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=54.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. +.|.++|||++++||+.++..+++.|.+.+. ..+.-+|++||+.
T Consensus 139 ~~LSgGq~qrv~lAral~~----~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tilivtH~~ 201 (279)
T PRK13650 139 ARLSGGQKQRVAIAGAVAM----RPKIIILDEATSMLDPEGRLELIKTIKGIRD-DYQMTVISITHDL 201 (279)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCH
Confidence 4599999999999998875 3589999999999999999999999988764 1367899999995
No 323
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.78 E-value=0.018 Score=66.84 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 837 NILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDA 872 (1050)
Q Consensus 837 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~ 872 (1050)
++...+.+.+.+++.+..++..-...+.+|+..|.+
T Consensus 619 dLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 619 DLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666665555555555555444444433
No 324
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.78 E-value=4.5e-05 Score=79.28 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++++||..++..+.+.|.+.+. ..-+|++||+.
T Consensus 167 ~~LS~Gq~qrv~laral~~----~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~---~~tiiivtH~~ 227 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAI----EPEVLLLDEPTSALDPISTLKIEELITELKS---KYTIVIVTHNM 227 (272)
T ss_pred ccCCHHHHHHHHHHHHHHC----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCeEEEEeCCH
Confidence 3489999999999988863 5689999999999999999999999988764 46799999995
No 325
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.78 E-value=2.9e-05 Score=83.56 Aligned_cols=63 Identities=19% Similarity=0.155 Sum_probs=53.8
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+.. .++++|||++++||...+..+...|..+.. ..+.-+|+|||..
T Consensus 143 ~~LSgGq~QRVaLARaL~~~----P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~g~tiI~vTHd~ 205 (375)
T PRK09452 143 HQLSGGQQQRVAIARAVVNK----PKVLLLDESLSALDYKLRKQMQNELKALQR-KLGITFVFVTHDQ 205 (375)
T ss_pred hhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 45999999999999988852 478999999999999999999988887764 2367899999994
No 326
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.78 E-value=4.3e-05 Score=78.10 Aligned_cols=62 Identities=23% Similarity=0.292 Sum_probs=52.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.++++|..++. +.|+++|||++++||+..+..+.+.|..... .+.-+|++||+.
T Consensus 136 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiii~sH~~ 197 (241)
T PRK10895 136 QSLSGGERRRVEIARALAA----NPKFILLDEPFAGVDPISVIDIKRIIEHLRD--SGLGVLITDHNV 197 (241)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEEcCH
Confidence 4599999999999987764 4689999999999999999998888877654 256799999984
No 327
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.78 E-value=5e-05 Score=78.11 Aligned_cols=62 Identities=15% Similarity=0.241 Sum_probs=53.0
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..|||||+.+++||..|+. +.++++|||++++||..+...+.++|.+... ..-+|++||+.
T Consensus 145 ~~~LS~Gq~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tilivsh~~ 206 (251)
T PRK14249 145 GLALSGGQQQRLCIARVLAI----EPEVILMDEPCSALDPVSTMRIEELMQELKQ---NYTIAIVTHNM 206 (251)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 34599999999999998874 3589999999999999999999998887742 57899999984
No 328
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.78 E-value=6e-05 Score=72.11 Aligned_cols=65 Identities=23% Similarity=0.328 Sum_probs=54.6
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
...||-||+.++-+|=.+-. +| +..||||..+|||..++..+.+.|.+.+...+..++|+|||+.
T Consensus 169 ~~~LS~Ge~rrvLiaRALv~---~P-~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~ 233 (257)
T COG1119 169 FGSLSQGEQRRVLIARALVK---DP-ELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA 233 (257)
T ss_pred hhhcCHhHHHHHHHHHHHhc---CC-CEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch
Confidence 34599999999877765432 22 3689999999999999999999999998867789999999994
No 329
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.77 E-value=4.7e-05 Score=81.08 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=52.9
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||+|.+++||..|+. ..++++|||+++|||+.++..+.+.|.+... .+.-+|++||..
T Consensus 171 ~~LS~G~kqrv~lA~aL~~----~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~--~g~tilisSH~l 232 (340)
T PRK13536 171 SDLSGGMKRRLTLARALIN----DPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFM 232 (340)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCH
Confidence 3599999999999988874 3479999999999999999999999988764 266788888884
No 330
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.77 E-value=0.1 Score=57.31 Aligned_cols=64 Identities=11% Similarity=0.156 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhh
Q 001581 814 IEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLS----TKQEADKKELKRFLAEIDALKEKW 877 (1050)
Q Consensus 814 ~~~l~~~i~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~----~~~~~l~~~~~~l~~~i~~l~~~~ 877 (1050)
+..++..+..++.++..+...|..+..+.+.+.-++.+-. ..+.+....+..+.+.+..+-.++
T Consensus 298 l~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~El 365 (546)
T KOG0977|consen 298 LRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVEL 365 (546)
T ss_pred HHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566666666666666666666555544433 234444444444444444443333
No 331
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.77 E-value=5e-05 Score=78.45 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=54.5
Q ss_pred ccccCchhHHHHHHHHHHHh-cc----cCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSL-QD----LTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al-~~----~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..|||||+.++++|..|+. |. ..+.++++|||++++||..++..+.+.|.+.+. ..+.-+|++||+.
T Consensus 143 ~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tviiisH~~ 215 (272)
T PRK13547 143 VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLAR-DWNLGVLAIVHDP 215 (272)
T ss_pred cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCH
Confidence 34599999999999998884 11 134589999999999999999999999988754 1256799999984
No 332
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.76 E-value=7.1e-05 Score=69.37 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=32.2
Q ss_pred EEEecccccceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHhc
Q 001581 26 IELHNFMTFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALALG 68 (1050)
Q Consensus 26 l~l~nF~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L~ 68 (1050)
+.+.|=+-....++++.|| ++.|+|||||||||++.+++.=|.
T Consensus 9 ~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 9 YSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred EEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC
Confidence 4444544455666776554 999999999999999999986664
No 333
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.76 E-value=4.4e-05 Score=69.50 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=56.0
Q ss_pred cccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 935 SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 935 ~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.+-+||||.|.++-+|=.+|. .|. |.+|||.+.++|.-.++.+-.+|++... ..+.|+++|||..
T Consensus 129 ~i~qLSGGmrQRvGiARALa~---eP~-~LlLDEPfgAlDa~tRe~mQelLldlw~-~tgk~~lliTH~i 193 (259)
T COG4525 129 YIWQLSGGMRQRVGIARALAV---EPQ-LLLLDEPFGALDALTREQMQELLLDLWQ-ETGKQVLLITHDI 193 (259)
T ss_pred ceEeecchHHHHHHHHHHhhc---Ccc-eEeecCchhhHHHHHHHHHHHHHHHHHH-HhCCeEEEEeccH
Confidence 345699999999999998884 443 8899999999999999999999999875 4678999999994
No 334
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.76 E-value=4.4e-05 Score=87.59 Aligned_cols=62 Identities=16% Similarity=0.287 Sum_probs=53.3
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..|+. +.++++|||++++||..++..+.+.|...+.. +.-+|++||+.
T Consensus 402 ~~LSgGqkqrv~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tviivsHd~ 463 (500)
T TIGR02633 402 GRLSGGNQQKAVLAKMLLT----NPRVLILDEPTRGVDVGAKYEIYKLINQLAQE--GVAIIVVSSEL 463 (500)
T ss_pred ccCCHHHHHHHHHHHHHhh----CCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC--CCEEEEECCCH
Confidence 3499999999999998884 36899999999999999999999988887652 55699999984
No 335
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.76 E-value=3.1e-05 Score=82.98 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=54.4
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..|||||+.+++||-.|+. +.++++|||.+++||...+..+...|.++.....+.-+|++||..
T Consensus 135 ~~~LSgGq~QRvaLARAL~~----~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~ 199 (362)
T TIGR03258 135 PAQLSGGMQQRIAIARAIAI----EPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ 199 (362)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 34599999999999998874 367899999999999999999999888776521256799999994
No 336
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.76 E-value=4.7e-05 Score=77.17 Aligned_cols=63 Identities=17% Similarity=0.117 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||+++|||+.++..+.+.|.+.+. .....+|++||+.
T Consensus 129 ~~lS~G~~qrl~laral~~----~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~~~tiii~sh~~ 191 (232)
T cd03300 129 SQLSGGQQQRVAIARALVN----EPKVLLLDEPLGALDLKLRKDMQLELKRLQK-ELGITFVFVTHDQ 191 (232)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCH
Confidence 3589999999999988874 4689999999999999999999988887654 1267899999985
No 337
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.76 E-value=5e-05 Score=80.01 Aligned_cols=62 Identities=23% Similarity=0.265 Sum_probs=52.5
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||+|.+++||..|+. ..++++|||+++|||+.++..+.+.|.+... .+.-+|++||..
T Consensus 137 ~~LS~G~~qrl~la~aL~~----~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~till~sH~l 198 (306)
T PRK13537 137 GELSGGMKRRLTLARALVN----DPDVLVLDEPTTGLDPQARHLMWERLRSLLA--RGKTILLTTHFM 198 (306)
T ss_pred hhCCHHHHHHHHHHHHHhC----CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCH
Confidence 4599999999999987763 3479999999999999999999999888754 266788888884
No 338
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.76 E-value=4.1e-05 Score=82.83 Aligned_cols=63 Identities=17% Similarity=0.116 Sum_probs=53.3
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. +.++++|||++++||...+..+.+.|.+... ..+.-+|++||+.
T Consensus 132 ~~LSgGq~QRvaLAraL~~----~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~-~~g~tvI~vTHd~ 194 (369)
T PRK11000 132 KALSGGQRQRVAIGRTLVA----EPSVFLLDEPLSNLDAALRVQMRIEISRLHK-RLGRTMIYVTHDQ 194 (369)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-HhCCEEEEEeCCH
Confidence 4599999999999998874 3579999999999999999999988887654 1256799999984
No 339
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.75 E-value=4.6e-05 Score=82.18 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=53.3
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..|+. +.++++|||++++||+.++..+.+.|.+.... .+.-+|++||+.
T Consensus 130 ~~LSgGqkqRvalAraL~~----~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiiivtH~~ 192 (354)
T TIGR02142 130 GRLSGGEKQRVAIGRALLS----SPRLLLMDEPLAALDDPRKYEILPYLERLHAE-FGIPILYVSHSL 192 (354)
T ss_pred hhCCHHHHHHHHHHHHHHc----CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCH
Confidence 4599999999999998874 35899999999999999999999999887642 245699999984
No 340
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=2.4e-05 Score=71.10 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=40.8
Q ss_pred cccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCC
Q 001581 935 SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLP 1006 (1050)
Q Consensus 935 ~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~ 1006 (1050)
.+..||-|++-++|||=+.. .++|.-||||+++++|..++..+...|...+. ..-=+|+-||+.++
T Consensus 127 p~~~LSAGQqRRvAlArL~l----s~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~--~GGiVllttHq~l~ 192 (209)
T COG4133 127 PVGQLSAGQQRRVALARLWL----SPAPLWILDEPFTALDKEGVALLTALMAAHAA--QGGIVLLTTHQPLP 192 (209)
T ss_pred chhhcchhHHHHHHHHHHHc----CCCCceeecCcccccCHHHHHHHHHHHHHHhc--CCCEEEEecCCccC
Confidence 34456777777777665543 45677777777777777777776666665553 24445556666543
No 341
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.75 E-value=5.1e-05 Score=78.59 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=52.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.++. +.|+++|||++++||+.....+.+.|.+.... .+.=+|++||+.
T Consensus 149 ~~LSgGe~qrv~laral~~----~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~ 211 (265)
T TIGR02769 149 RQLSGGQLQRINIARALAV----KPKLIVLDEAVSNLDMVLQAVILELLRKLQQA-FGTAYLFITHDL 211 (265)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCH
Confidence 3499999999999987764 46899999999999999999999999887641 245689999984
No 342
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.75 E-value=5e-05 Score=78.62 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=53.5
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.+.++|||++.+||......+.+.|.+.+.+ .+.-+|++||+.
T Consensus 151 ~~LS~G~~qrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~tH~~ 213 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQ----QAKVILADEPIASLDPESARIVMDTLRDINQN-DGITVVVTLHQV 213 (262)
T ss_pred cccCHHHHHHHHHHHHHhc----CCCEEEecCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 4599999999999988874 35789999999999999999999999887641 257899999985
No 343
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.75 E-value=4.4e-05 Score=74.88 Aligned_cols=84 Identities=20% Similarity=0.287 Sum_probs=63.1
Q ss_pred cccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCC-CCC
Q 001581 935 SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEY-SEA 1013 (1050)
Q Consensus 935 ~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~-~~~ 1013 (1050)
..+++|||++.++++|-.+|+- | -|+|.||+.++||..-...+.++|.++-. ..+.=|+||||.+ .-+.+ ++.
T Consensus 106 yPhelSGGQrQRi~IARALal~---P-~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL-~vv~~isdr 179 (268)
T COG4608 106 YPHELSGGQRQRIGIARALALN---P-KLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDL-SVVRYISDR 179 (268)
T ss_pred CCcccCchhhhhHHHHHHHhhC---C-cEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEH-Hhhhhhccc
Confidence 4678999999999999999973 2 28999999999999999999988888754 3467899999996 22222 343
Q ss_pred eEEEEEecCCCCC
Q 001581 1014 CSILNIMNGPWIE 1026 (1050)
Q Consensus 1014 ~~~~~~~~~~~~~ 1026 (1050)
+-|+ +.|.-++
T Consensus 180 i~VM--y~G~iVE 190 (268)
T COG4608 180 IAVM--YLGKIVE 190 (268)
T ss_pred EEEE--ecCceeE
Confidence 3333 5665444
No 344
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.75 E-value=6.8e-05 Score=74.63 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=54.5
Q ss_pred ccccCchhHHHHHHHHHHHhcc----c--CCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQD----L--TNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~----~--~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..+||||+.++++|..|+... . .+.++++|||++++||+.....+.+.|.+... ...=+|+|||+.
T Consensus 121 ~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~--~~~tii~itH~~ 193 (213)
T cd03279 121 VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT--ENRMVGVISHVE 193 (213)
T ss_pred ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEECch
Confidence 4569999999999999998532 1 23458999999999999999999888877754 255799999974
No 345
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.74 E-value=4.1e-05 Score=87.53 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=54.2
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..||||||.+++||..|+. +.|+++|||++++||+.++..+.+.|.+.+.. +.=+|++||+.
T Consensus 133 ~~~LSgG~~qrv~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tvii~tH~~ 195 (490)
T PRK10938 133 FKYLSTGETRKTLLCQALMS----EPDLLILDEPFDGLDVASRQQLAELLASLHQS--GITLVLVLNRF 195 (490)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc--CCeEEEEeCCH
Confidence 34599999999999998874 47899999999999999999999999887652 55689999884
No 346
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=5.8e-05 Score=78.64 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=53.9
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. +.|+++|||++.+||+.+...+.+.|.+.+. ..+.-+|++||..
T Consensus 139 ~~LS~G~~qrv~lAraL~~----~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tiil~sH~~ 201 (277)
T PRK13642 139 ARLSGGQKQRVAVAGIIAL----RPEIIILDESTSMLDPTGRQEIMRVIHEIKE-KYQLTVLSITHDL 201 (277)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4599999999999998874 3589999999999999999999998887754 2367899999995
No 347
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=5.9e-05 Score=78.33 Aligned_cols=62 Identities=15% Similarity=0.280 Sum_probs=52.8
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||+.++..+.+.|.+... .+.-+|++||+.
T Consensus 135 ~~LS~G~~qrv~laral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~~tH~~ 196 (274)
T PRK13644 135 KTLSGGQGQCVALAGILTM----EPECLIFDEVTSMLDPDSGIAVLERIKKLHE--KGKTIVYITHNL 196 (274)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCH
Confidence 3599999999999988874 3579999999999999999999998887654 267799999984
No 348
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.74 E-value=0.12 Score=56.94 Aligned_cols=68 Identities=16% Similarity=0.283 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001581 626 KKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESIE 693 (1050)
Q Consensus 626 ~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~l~~l~ 693 (1050)
...++.++..+..++..+...+............++......+..++.++..++..+..+..++..|.
T Consensus 108 ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk 175 (546)
T KOG0977|consen 108 RAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLK 175 (546)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333333333333333333344444444444444444444444443
No 349
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=6.1e-05 Score=78.42 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=53.3
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.||||++.+++||-.|+. +.++++|||+++|||+.++..+++.|.+.+. ..++-+|++||+.
T Consensus 140 ~LS~G~~qrv~laral~~----~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~~~~tilivsH~~ 201 (279)
T PRK13635 140 RLSGGQKQRVAIAGVLAL----QPDIIILDEATSMLDPRGRREVLETVRQLKE-QKGITVLSITHDL 201 (279)
T ss_pred cCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEecCH
Confidence 599999999999988874 3579999999999999999999999988764 2367899999984
No 350
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.73 E-value=5.1e-05 Score=81.67 Aligned_cols=63 Identities=21% Similarity=0.191 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||-.++. +.++++|||++++||+.++..+.+.|.+... ..+.-+|++||..
T Consensus 127 ~~LSgGq~qRvalaraL~~----~p~llLLDEPts~LD~~~~~~l~~~L~~l~~-~~g~tii~vTHd~ 189 (352)
T PRK11144 127 GSLSGGEKQRVAIGRALLT----APELLLMDEPLASLDLPRKRELLPYLERLAR-EINIPILYVSHSL 189 (352)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCeEEEEecCH
Confidence 4599999999999998874 3579999999999999999999998887764 1245699999984
No 351
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.73 E-value=5.7e-05 Score=78.81 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||+++|||+.++..+.+.|.+... ..+.-+|++||..
T Consensus 143 ~~LS~G~~qrv~laral~~----~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tillvtH~~ 205 (280)
T PRK13633 143 HLLSGGQKQRVAIAGILAM----RPECIIFDEPTAMLDPSGRREVVNTIKELNK-KYGITIILITHYM 205 (280)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCh
Confidence 4599999999999988874 3579999999999999999999998887754 1367899999985
No 352
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.73 E-value=4.4e-05 Score=72.93 Aligned_cols=64 Identities=17% Similarity=0.316 Sum_probs=52.6
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+++|||||+.++-++=.+|-- -|...|||.+.+||+.++..+-+.+.++-. .-+.=++||||..
T Consensus 133 P~eLSGGQQQRVGv~RALAad----P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~-~l~kTivfVTHDi 196 (309)
T COG1125 133 PHELSGGQQQRVGVARALAAD----PPILLMDEPFGALDPITRKQLQEEIKELQK-ELGKTIVFVTHDI 196 (309)
T ss_pred chhcCcchhhHHHHHHHHhcC----CCeEeecCCccccChhhHHHHHHHHHHHHH-HhCCEEEEEecCH
Confidence 567999999999999988842 478999999999999999987766666543 3466899999995
No 353
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.73 E-value=5.5e-05 Score=75.11 Aligned_cols=61 Identities=16% Similarity=0.081 Sum_probs=49.7
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..+|||||.++++|..|+. +.|+++|||+.+++|+.+...+...|.+.... .+ +|++||..
T Consensus 103 ~~lS~G~~qrv~la~al~~----~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~--~~-ii~vsH~~ 163 (213)
T PRK15177 103 SEYSVTMKTHLAFAINLLL----PCRLYIADGKLYTGDNATQLRMQAALACQLQQ--KG-LIVLTHNP 163 (213)
T ss_pred hhcCHHHHHHHHHHHHHhc----CCCEEEECCCCccCCHHHHHHHHHHHHHHhhC--Cc-EEEEECCH
Confidence 4589999999999988863 57899999999999999999988877665442 33 78888875
No 354
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.72 E-value=6.6e-05 Score=79.63 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=52.4
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.||||||.+++||-.++. ..++++|||++++||+.+...+.+.|...+. +.-+|+|||+.
T Consensus 225 ~LSgGqkqRl~LARAl~~----~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~---~~Tii~iTH~l 284 (329)
T PRK14257 225 ALSGGQQQRLCIARAIAL----EPEVLLMDEPTSALDPIATAKIEELILELKK---KYSIIIVTHSM 284 (329)
T ss_pred cCCHHHHHHHHHHHHHHh----CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 489999999999887763 5789999999999999999998888887764 57899999995
No 355
>PRK11637 AmiB activator; Provisional
Probab=97.72 E-value=0.025 Score=63.11 Aligned_cols=66 Identities=9% Similarity=0.088 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 622 LRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKR 687 (1050)
Q Consensus 622 l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~ 687 (1050)
+..++..+..++..+..++..+..++..+...+..+..++..+..++..+..++..++.++...+.
T Consensus 59 ~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 59 KEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444444444444444444444444333333
No 356
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.72 E-value=4.8e-05 Score=87.02 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=53.7
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..++. +.++++|||+++|||+.++..+.+.|.+.+.. ..+.+|++||+.
T Consensus 400 ~~LSgGq~qrv~la~al~~----~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tviivsHd~ 462 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVK----HPTLLILDEPLQGLDPLNRQLVRRFVDVLISE-GETQLLFVSHHA 462 (490)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCccccCCHHHHHHHHHHHHHHHhc-CCcEEEEEecch
Confidence 4499999999999987773 57799999999999999999999999888652 345699999984
No 357
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.71 E-value=4.9e-05 Score=87.67 Aligned_cols=64 Identities=22% Similarity=0.266 Sum_probs=54.3
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..||||||.+++||-.|+. +.++++|||++++||+.....+.++|.+++.+ .+.-+|+|||+.
T Consensus 154 ~~~LSgGe~qrv~iAraL~~----~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~ 217 (529)
T PRK15134 154 PHQLSGGERQRVMIAMALLT----RPELLIADEPTTALDVSVQAQILQLLRELQQE-LNMGLLFITHNL 217 (529)
T ss_pred CcccCHHHHHHHHHHHHHhc----CCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh-cCCeEEEEcCcH
Confidence 34599999999999998874 46799999999999999999999999887641 245699999994
No 358
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=8.4e-05 Score=79.37 Aligned_cols=76 Identities=21% Similarity=0.397 Sum_probs=59.8
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCe-EE
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEAC-SI 1016 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~~-~~ 1016 (1050)
.||||||++++++=.| ...+|+++|||.+.+||...++.++++|++.++ +.=+|+|-|.+ +..++. .|
T Consensus 487 ~LSGGekQrvslaRa~----lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~---~rTvI~IvH~l----~ll~~~DkI 555 (591)
T KOG0057|consen 487 MLSGGEKQRVSLARAF----LKDAPILLLDEATSALDSETEREILDMIMDVMS---GRTVIMIVHRL----DLLKDFDKI 555 (591)
T ss_pred ccccchHHHHHHHHHH----hcCCCeEEecCcccccchhhHHHHHHHHHHhcC---CCeEEEEEecc----hhHhcCCEE
Confidence 3899999999987644 578999999999999999999999999999665 88899999885 222222 45
Q ss_pred EEEecCCC
Q 001581 1017 LNIMNGPW 1024 (1050)
Q Consensus 1017 ~~~~~~~~ 1024 (1050)
+..-||--
T Consensus 556 ~~l~nG~v 563 (591)
T KOG0057|consen 556 IVLDNGTV 563 (591)
T ss_pred EEEECCee
Confidence 54456643
No 359
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=6.7e-05 Score=78.32 Aligned_cols=63 Identities=16% Similarity=0.314 Sum_probs=54.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.++. +.|+++|||+++|||..++..+.+.|.+.+. ..+..+|++||+.
T Consensus 142 ~~LS~G~~qrv~laral~~----~P~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tvli~tH~~ 204 (282)
T PRK13640 142 ANLSGGQKQRVAIAGILAV----EPKIIILDESTSMLDPAGKEQILKLIRKLKK-KNNLTVISITHDI 204 (282)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCH
Confidence 4599999999999988875 3589999999999999999999999988764 2367899999985
No 360
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=6.7e-05 Score=76.14 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. ..++++|||++++||..++..+.+.|.+.+. ..+.-+|++||+.
T Consensus 128 ~~LS~G~~qrl~laral~~----~p~llllDEPt~gLD~~~~~~l~~~l~~~~~-~~~~tili~tH~~ 190 (235)
T cd03299 128 ETLSGGEQQRVAIARALVV----NPKILLLDEPFSALDVRTKEKLREELKKIRK-EFGVTVLHVTHDF 190 (235)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEECCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCH
Confidence 3499999999999988774 3689999999999999999999998888754 2256799999984
No 361
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.71 E-value=5.7e-05 Score=86.47 Aligned_cols=62 Identities=16% Similarity=0.241 Sum_probs=53.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..++. +.++++|||++++||+.+...+.+.|.+.+.. +.-+|++||+.
T Consensus 394 ~~LSgGekqrv~lA~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tviivtHd~ 455 (501)
T PRK10762 394 GLLSGGNQQKVAIARGLMT----RPKVLILDEPTRGVDVGAKKEIYQLINQFKAE--GLSIILVSSEM 455 (501)
T ss_pred hhCCHHHHHHHHHHHHHhh----CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC--CCEEEEEcCCH
Confidence 3499999999999998874 46899999999999999999999999887652 55699999984
No 362
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.70 E-value=4.5e-05 Score=83.14 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=54.7
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+++||||||.++|+|-.||+- |- +.|+||+..+||+.....++++|.++-. .-+.=|+||||++
T Consensus 427 P~elSGGQrQRvaIARALa~~---P~-lli~DEp~SaLDvsvqa~VlnLl~~lq~-e~g~t~lfISHDl 490 (539)
T COG1123 427 PHELSGGQRQRVAIARALALE---PK-LLILDEPVSALDVSVQAQVLNLLKDLQE-ELGLTYLFISHDL 490 (539)
T ss_pred chhcCcchhHHHHHHHHHhcC---CC-EEEecCCccccCHHHHHHHHHHHHHHHH-HhCCEEEEEeCCH
Confidence 456999999999999999962 22 7899999999999999999999988754 3467899999996
No 363
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.70 E-value=8.4e-05 Score=69.08 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=52.4
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
...||||++.++.+|=.+|+. |- ..+|||+.++|||..+.++=++|.++.. ..=+++|||.+
T Consensus 147 a~~LSGGQQQRLcIARalAv~---Pe-VlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnm 208 (253)
T COG1117 147 ALGLSGGQQQRLCIARALAVK---PE-VLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNM 208 (253)
T ss_pred ccCCChhHHHHHHHHHHHhcC---Cc-EEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCH
Confidence 344999999999999999962 22 5799999999999999998888877765 78899999984
No 364
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=6.8e-05 Score=78.34 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=53.4
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..|||||+.+++||-.++. +.|+++|||++.|||+.++..+.+.|.+.+.+ .+.-+|++||+.
T Consensus 139 ~~~LS~G~~qrl~laraL~~----~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvsH~~ 202 (283)
T PRK13636 139 THCLSFGQKKRVAIAGVLVM----EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE-LGLTIIIATHDI 202 (283)
T ss_pred cccCCHHHHHHHHHHHHHHc----CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCH
Confidence 34599999999999987764 45899999999999999999999988887641 256789999984
No 365
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.69 E-value=6.3e-05 Score=85.94 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=53.8
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..||||||.+++||-.|+. +.++++|||++++||+.....+.++|.+.+. .+.-+|++||+.
T Consensus 132 ~~~LSgGq~qrv~lA~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tvii~tH~~ 194 (491)
T PRK10982 132 VATLSVSQMQMIEIAKAFSY----NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE--RGCGIVYISHKM 194 (491)
T ss_pred hhhCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCH
Confidence 34599999999999988874 4689999999999999999999999888764 256799999984
No 366
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.69 E-value=6.8e-05 Score=76.21 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=53.5
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++.+||..++..+.++|.+... ..+..+|++||..
T Consensus 129 ~~lS~G~~qrl~laral~~----~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tvli~sH~~ 191 (237)
T TIGR00968 129 NQLSGGQRQRVALARALAV----EPQVLLLDEPFGALDAKVRKELRSWLRKLHD-EVHVTTVFVTHDQ 191 (237)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 3499999999999998874 4589999999999999999999999987654 1257899999984
No 367
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=0.00024 Score=73.55 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=57.8
Q ss_pred cccCchhHHHHHHHHHHHhc-----ccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQ-----DLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYS 1011 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~-----~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~ 1011 (1050)
+.+|+|++..+++++.+|.. .....|+++|||++++||+.+...+...|.. ..|+|++||+.-.-..+.
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~------~~q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEG------RVQTFVTTTDLADFDALW 255 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhc------CCCEEEEeCCchhccchh
Confidence 34899999999999988732 2346689999999999999999998887753 238888888742211222
Q ss_pred -CCeEEEEEecC
Q 001581 1012 -EACSILNIMNG 1022 (1050)
Q Consensus 1012 -~~~~~~~~~~~ 1022 (1050)
++.+++.+.+|
T Consensus 256 ~~~~~i~~l~~g 267 (270)
T cd03242 256 LRRAQIFRVDAG 267 (270)
T ss_pred ccCccEEEEeCc
Confidence 44456655554
No 368
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.69 E-value=8.4e-05 Score=75.75 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=52.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.|+++|||++++||..++..+...|.+.... +.=+|++||+.
T Consensus 138 ~~LS~G~~qrv~laral~~----~p~illlDEPts~LD~~~~~~l~~~l~~l~~~--~~tIIiiSHd~ 199 (255)
T cd03236 138 DQLSGGELQRVAIAAALAR----DADFYFFDEPSSYLDIKQRLNAARLIRELAED--DNYVLVVEHDL 199 (255)
T ss_pred hhCCHHHHHHHHHHHHHHh----CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEECCH
Confidence 3489999999999998874 45899999999999999999999888877642 45588888884
No 369
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.69 E-value=4.7e-05 Score=81.57 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=53.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. +.++++|||++++||..++..+.+.|.++.. ..+.-+|++||..
T Consensus 135 ~~LSgGq~QRvalArAL~~----~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~g~tii~vTHd~ 197 (353)
T PRK10851 135 AQLSGGQKQRVALARALAV----EPQILLLDEPFGALDAQVRKELRRWLRQLHE-ELKFTSVFVTHDQ 197 (353)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 4599999999999988863 3579999999999999999999998888764 2356799999994
No 370
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.69 E-value=6.4e-05 Score=74.37 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=53.9
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+.+||||+|.++++|=.+|. .|. ..+-||.+++|||..++.++++|.++-+ .-+.=+++|||.+
T Consensus 139 P~qLSGGQKQRVaIARALa~---~P~-iLL~DEaTSALDP~TT~sIL~LL~~In~-~lglTIvlITHEm 202 (339)
T COG1135 139 PAQLSGGQKQRVAIARALAN---NPK-ILLCDEATSALDPETTQSILELLKDINR-ELGLTIVLITHEM 202 (339)
T ss_pred chhcCcchhhHHHHHHHHhc---CCC-EEEecCccccCChHHHHHHHHHHHHHHH-HcCCEEEEEechH
Confidence 45699999999999999885 233 4677999999999999999999988754 3567899999995
No 371
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.68 E-value=9.2e-05 Score=76.58 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=56.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeEE
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSI 1016 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~~~~ 1016 (1050)
..|||||+.+++||..++. +.|+++|||++++||+..+..+.+.+...... ..-+|++||+. ..+...+ .+
T Consensus 158 ~~LSgGq~qrv~lAraL~~----~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~--~~tIiiisH~~-~~~~~~d--~i 228 (282)
T cd03291 158 ITLSGGQRARISLARAVYK----DADLYLLDSPFGYLDVFTEKEIFESCVCKLMA--NKTRILVTSKM-EHLKKAD--KI 228 (282)
T ss_pred CcCCHHHHHHHHHHHHHhc----CCCEEEEECCCccCCHHHHHHHHHHHHHHhhC--CCEEEEEeCCh-HHHHhCC--EE
Confidence 3599999999999887773 46899999999999999999888765433332 57889999884 2233322 34
Q ss_pred EEEecCC
Q 001581 1017 LNIMNGP 1023 (1050)
Q Consensus 1017 ~~~~~~~ 1023 (1050)
+++.+|.
T Consensus 229 ~~l~~G~ 235 (282)
T cd03291 229 LILHEGS 235 (282)
T ss_pred EEEECCE
Confidence 4334554
No 372
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.68 E-value=4.8e-05 Score=89.05 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=54.5
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
++.||||||.+++||..|+. ..+++|+||++++||..+...+.++|.++... .+.=+|||||..
T Consensus 461 ~~~LSgGqrQRv~iAraL~~----~p~llllDEPts~LD~~~~~~i~~ll~~l~~~-~g~tvi~isHdl 524 (623)
T PRK10261 461 PHEFSGGQRQRICIARALAL----NPKVIIADEAVSALDVSIRGQIINLLLDLQRD-FGIAYLFISHDM 524 (623)
T ss_pred cccCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 34599999999999998874 36899999999999999999999999887642 246799999984
No 373
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.68 E-value=6.8e-05 Score=86.14 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..|+. +.++++|||++++||..+...+.+.|.+.+.. +.-+|++||+.
T Consensus 408 ~~LSgGq~qrv~lAral~~----~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tvi~vsHd~ 469 (510)
T PRK09700 408 TELSGGNQQKVLISKWLCC----CPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD--GKVILMVSSEL 469 (510)
T ss_pred ccCChHHHHHHHHHHHHhc----CCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEcCCH
Confidence 4599999999999998874 46899999999999999999999999887642 45599999984
No 374
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.67 E-value=4.7e-05 Score=87.82 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=53.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..|+. +.++++|||++++||+.+...++++|.+.+.. .+.-+|+|||..
T Consensus 424 ~~LSgG~~qrv~la~al~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsHd~ 486 (529)
T PRK15134 424 AEFSGGQRQRIAIARALIL----KPSLIILDEPTSSLDKTVQAQILALLKSLQQK-HQLAYLFISHDL 486 (529)
T ss_pred ccCCHHHHHHHHHHHHHhC----CCCEEEeeCCccccCHHHHHHHHHHHHHHHHh-hCCEEEEEeCCH
Confidence 4599999999999998873 46899999999999999999999999887642 245699999984
No 375
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.67 E-value=0.07 Score=60.64 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 630 EESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQ 669 (1050)
Q Consensus 630 ~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~ 669 (1050)
+.++..++.+++.+..++..+...+..+...+..+..++.
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~ 366 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE 366 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444333333
No 376
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.67 E-value=6.8e-05 Score=85.83 Aligned_cols=62 Identities=18% Similarity=0.298 Sum_probs=53.2
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..|+. +.++++|||++.|||..++..+++.|.+++.. +.=+|++||+.
T Consensus 395 ~~LSgGq~qrl~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tviivsHd~ 456 (501)
T PRK11288 395 MNLSGGNQQKAILGRWLSE----DMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ--GVAVLFVSSDL 456 (501)
T ss_pred ccCCHHHHHHHHHHHHHcc----CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC--CCEEEEECCCH
Confidence 3599999999999998873 46899999999999999999999998887652 45599999984
No 377
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.67 E-value=7e-05 Score=85.86 Aligned_cols=62 Identities=18% Similarity=0.305 Sum_probs=53.5
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..|+. +.++++|||++++||+.+...+.++|.+.+.. +.=+|++||..
T Consensus 404 ~~LSgG~kqrv~lA~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tvi~~sHd~ 465 (506)
T PRK13549 404 ARLSGGNQQKAVLAKCLLL----NPKILILDEPTRGIDVGAKYEIYKLINQLVQQ--GVAIIVISSEL 465 (506)
T ss_pred ccCCHHHHHHHHHHHHHhh----CCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC--CCEEEEECCCH
Confidence 4599999999999998874 46799999999999999999999988887652 55699999984
No 378
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.67 E-value=8.7e-05 Score=70.59 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=54.2
Q ss_pred ccccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 934 LSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 934 ~~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+-+++||||.+-++|||=.+|+ +| ++.++||.++||||.....+-+++.++-. .-..=+|+|||+.
T Consensus 141 ~~PsELSGGM~KRvaLARAial---dP-ell~~DEPtsGLDPI~a~~~~~LI~~L~~-~lg~T~i~VTHDl 206 (263)
T COG1127 141 LYPSELSGGMRKRVALARAIAL---DP-ELLFLDEPTSGLDPISAGVIDELIRELND-ALGLTVIMVTHDL 206 (263)
T ss_pred hCchhhcchHHHHHHHHHHHhc---CC-CEEEecCCCCCCCcchHHHHHHHHHHHHH-hhCCEEEEEECCh
Confidence 4567899999999999999996 33 68899999999999998886666655533 3567899999996
No 379
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.67 E-value=0.024 Score=55.14 Aligned_cols=121 Identities=19% Similarity=0.216 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHH
Q 001581 620 ERLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESIEKEDDIN 699 (1050)
Q Consensus 620 ~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~~ 699 (1050)
+.+..++..+...+......+..++.++..+...+..+...+..++.++..++..+..+..+++..+..+.... ..
T Consensus 13 q~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~----~~ 88 (239)
T COG1579 13 QKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK----DE 88 (239)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cH
Confidence 34444555555555555555555666666666555555555555555555555555555555555544442222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001581 700 TALAKLVDQAADLNIQQFKYAIEIKNLLVEIVSCKWSYAEKHMAS 744 (1050)
Q Consensus 700 ~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 744 (1050)
.++..|..++..+..+...+..++..+......+..++..+...+
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333333333333333333
No 380
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.66 E-value=6.9e-05 Score=88.04 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=52.4
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
||||||.+++||=.+. .+.|+++|||++++||..+++.+.+.|.+.+. +.=+|+|||+.
T Consensus 470 LSgGqrQRiaLARall----~~~~illLDEpts~LD~~~~~~i~~~L~~~~~---~~tiIiitH~~ 528 (571)
T TIGR02203 470 LSGGQRQRLAIARALL----KDAPILILDEATSALDNESERLVQAALERLMQ---GRTTLVIAHRL 528 (571)
T ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHHhC---CCEEEEEehhh
Confidence 8999999999987665 45799999999999999999999999987754 68899999996
No 381
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=9.1e-05 Score=77.17 Aligned_cols=63 Identities=25% Similarity=0.383 Sum_probs=52.9
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..|+. +.++++|||++.+||+.++..+.+.|.+... ..+.-+|++||+.
T Consensus 136 ~~LS~Gq~qrl~laraL~~----~p~llilDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tvli~tH~~ 198 (277)
T PRK13652 136 HHLSGGEKKRVAIAGVIAM----EPQVLVLDEPTAGLDPQGVKELIDFLNDLPE-TYGMTVIFSTHQL 198 (277)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCH
Confidence 3599999999999988875 3579999999999999999999998887754 1256789999984
No 382
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.66 E-value=7.5e-05 Score=85.67 Aligned_cols=62 Identities=13% Similarity=0.273 Sum_probs=53.7
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||-.|+. +.++++|||++++||+.++..+.+.|.+.+. .+.-+|++||..
T Consensus 140 ~~LSgG~~qrv~iA~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tviiitHd~ 201 (500)
T TIGR02633 140 GDYGGGQQQLVEIAKALNK----QARLLILDEPSSSLTEKETEILLDIIRDLKA--HGVACVYISHKL 201 (500)
T ss_pred hhCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCcH
Confidence 4599999999999998875 3679999999999999999999999988764 256799999983
No 383
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.66 E-value=0.00011 Score=72.73 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=50.3
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHH-HHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLV-RAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~-~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. +.++++|||++++||+.+...+++.+. .... ...=+|++||+.
T Consensus 126 ~~lS~G~~qrv~laral~~----~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~--~~~tvi~~sh~~ 188 (204)
T cd03250 126 INLSGGQKQRISLARAVYS----DADIYLLDDPLSAVDAHVGRHIFENCILGLLL--NNKTRILVTHQL 188 (204)
T ss_pred CcCCHHHHHHHHHHHHHhc----CCCEEEEeCccccCCHHHHHHHHHHHHHHhcc--CCCEEEEEeCCH
Confidence 3489999999999988874 468999999999999999998887554 3433 257789999984
No 384
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.65 E-value=8e-05 Score=85.11 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=52.7
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..|+. +.++++|||+++|||..++..+.+.|.++... +.-+|++||+.
T Consensus 390 ~~LSgGq~qrv~la~al~~----~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~--~~tvi~vsHd~ 451 (491)
T PRK10982 390 GSLSGGNQQKVIIGRWLLT----QPEILMLDEPTRGIDVGAKFEIYQLIAELAKK--DKGIIIISSEM 451 (491)
T ss_pred ccCCcHHHHHHHHHHHHhc----CCCEEEEcCCCcccChhHHHHHHHHHHHHHHC--CCEEEEECCCh
Confidence 4599999999999987763 46899999999999999999999988776542 55699999984
No 385
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.65 E-value=4.1e-05 Score=72.43 Aligned_cols=28 Identities=39% Similarity=0.370 Sum_probs=22.9
Q ss_pred eEEEecCCc-eeEEEcCCCCChhHHHHHH
Q 001581 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAI 63 (1050)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai 63 (1050)
++.+.+.+| +.+|+|||||||||++.+|
T Consensus 13 ~isl~i~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 13 NLDVSIPLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 455555543 8899999999999999987
No 386
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.65 E-value=5.4e-05 Score=80.88 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. ..++++|||++++||...+..+...|.+... ..+.-+|++||+.
T Consensus 135 ~~LSgGq~QRVaLARaL~~----~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tii~vTHd~ 197 (351)
T PRK11432 135 DQISGGQQQRVALARALIL----KPKVLLFDEPLSNLDANLRRSMREKIRELQQ-QFNITSLYVTHDQ 197 (351)
T ss_pred hhCCHHHHHHHHHHHHHHc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEcCCH
Confidence 4599999999999998875 2578999999999999999999888887654 2356899999994
No 387
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=0.14 Score=55.55 Aligned_cols=16 Identities=19% Similarity=0.298 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 001581 843 EHRQRQIEDLSTKQEA 858 (1050)
Q Consensus 843 ~~~~~~~~~l~~~~~~ 858 (1050)
.....+++.+.+++..
T Consensus 488 ~k~~~E~e~le~~l~~ 503 (581)
T KOG0995|consen 488 KKCRKEIEKLEEELLN 503 (581)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 388
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.65 E-value=7.9e-05 Score=85.32 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=53.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||-.|+. +.++++|||++++||+.++..+.++|.+.+. .+.=+|++||+.
T Consensus 139 ~~LSgGq~qrv~laral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiiiitHd~ 200 (501)
T PRK11288 139 KYLSIGQRQMVEIAKALAR----NARVIAFDEPTSSLSAREIEQLFRVIRELRA--EGRVILYVSHRM 200 (501)
T ss_pred hhCCHHHHHHHHHHHHHHh----CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 4599999999999988874 4689999999999999999999999988764 256799999984
No 389
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.65 E-value=6.8e-05 Score=80.44 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=53.7
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||++.+++||-.|+. +.++++|||++++||+..+..+.+.|.+... ..+.=+|||||+.
T Consensus 163 ~~LSgGq~QRV~LARALa~----~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~-~~~~TII~iTHdl 225 (382)
T TIGR03415 163 GELSGGMQQRVGLARAFAM----DADILLMDEPFSALDPLIRTQLQDELLELQA-KLNKTIIFVSHDL 225 (382)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEECCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCH
Confidence 3599999999999998873 4679999999999999999999999988754 2256799999984
No 390
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=97.64 E-value=5.1e-05 Score=67.67 Aligned_cols=108 Identities=12% Similarity=0.177 Sum_probs=74.7
Q ss_pred CcccccceeEEeeCCcchHHHHHhhhcccccceEEeechhhHHHHHhhcCCCCcceEeecCCCCCCCCC-CCChHHHHhc
Q 001581 450 KEAYGPVLLEVNVSNRAHANYLEDHVGHYIWKSFITQDAGDRDFLAKNLKPFDVPILNYVSNESSRKEP-FQISEEMRAL 528 (1050)
Q Consensus 450 ~~~~g~~~~~i~~~~~~~~~~ie~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 528 (1050)
.+++|++++++.+ ++.|..+|+.++|+.. .+++|++.+++..+++.++..+.+.+++.+.+.....+ ..........
T Consensus 2 ~gv~G~l~dli~v-~~~~~~Ave~~LG~~l-~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~~~~~~~~~~~~ 79 (120)
T PF06470_consen 2 PGVLGRLADLIEV-DPKYEKAVEAALGGRL-QAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRSSASSADQIRPP 79 (120)
T ss_dssp TTEEEEGGGSEEE-SGGGHHHHHHHHGGGG-GSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGTTSCCCGGHHST
T ss_pred CCeeeeHHhceec-CHHHHHHHHHHHHHhh-ceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccccccchhhccCC
Confidence 4789999999999 8999999999999965 67999999999999988874434434433322111001 1111111133
Q ss_pred CccccccccccC-cHHHHHHHHhhcCCcccccCC
Q 001581 529 GISARLDQVFDA-PHAVKEVLISQFGLDSSYIGS 561 (1050)
Q Consensus 529 ~~~~~~~~l~~~-~~~~~~~l~~~~~~~~~~i~~ 561 (1050)
+...++.+++.+ ++.+.+++...+| .++++.
T Consensus 80 ~~~~~l~d~i~~~d~~~~~~~~~llg--~~~vv~ 111 (120)
T PF06470_consen 80 GGAGPLIDLIEFPDEEYRPALEFLLG--DVVVVD 111 (120)
T ss_dssp TSEEEGGGGEEESCGGGHHHHHHHHT--TEEEES
T ss_pred cchHHHHHhcccCcHHHHHHHHHHcC--CEEEEC
Confidence 556678899999 7899999999987 444443
No 391
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.64 E-value=8.8e-05 Score=78.20 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=51.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||++.++++|..++- ..|+.+|||++.|||+..+..+.+.|..... ..-+|++||..
T Consensus 132 ~~LS~G~~qrv~la~al~~----~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~---~~tiii~sH~l 192 (301)
T TIGR03522 132 GQLSKGYRQRVGLAQALIH----DPKVLILDEPTTGLDPNQLVEIRNVIKNIGK---DKTIILSTHIM 192 (301)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHhcC---CCEEEEEcCCH
Confidence 3499999999999987763 3479999999999999999999998887753 57788888884
No 392
>PRK13409 putative ATPase RIL; Provisional
Probab=97.64 E-value=8.7e-05 Score=85.41 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||..++. ..++++|||++++||+..+..+++.|.+++. +.-+|+|||+.
T Consensus 211 ~~LSgGe~qrv~ia~al~~----~p~lllLDEPts~LD~~~~~~l~~~i~~l~~---g~tvIivsHd~ 271 (590)
T PRK13409 211 SELSGGELQRVAIAAALLR----DADFYFFDEPTSYLDIRQRLNVARLIRELAE---GKYVLVVEHDL 271 (590)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEECCCCCCCHHHHHHHHHHHHHHHC---CCEEEEEeCCH
Confidence 4599999999999987773 4689999999999999999999998887754 56799999984
No 393
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=0.0001 Score=75.77 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=52.6
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. +.++.+|||++.+||......+.+.|.+... ...+|++||+.
T Consensus 152 ~~LS~G~~qrl~laral~~----~P~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiilvsh~~ 212 (257)
T PRK14246 152 SQLSGGQQQRLTIARALAL----KPKVLLMDEPTSMIDIVNSQAIEKLITELKN---EIAIVIVSHNP 212 (257)
T ss_pred ccCCHHHHHHHHHHHHHHc----CCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CcEEEEEECCH
Confidence 3499999999999988774 3478999999999999999999998887753 58999999994
No 394
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.63 E-value=7.5e-05 Score=86.06 Aligned_cols=64 Identities=17% Similarity=0.295 Sum_probs=53.6
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..||||||.+++||..|+. +.++++|||++++||+.+...+.+.|.+.+.. .+.-+|+|||+.
T Consensus 425 ~~~LSgGq~qrv~laral~~----~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvi~vsHd~ 488 (520)
T TIGR03269 425 PDELSEGERHRVALAQVLIK----EPRIVILDEPTGTMDPITKVDVTHSILKAREE-MEQTFIIVSHDM 488 (520)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEeCCH
Confidence 34599999999999987763 46899999999999999999999999877541 246699999984
No 395
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.63 E-value=6.7e-05 Score=86.88 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=50.8
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..++. +.|+++|||++++||+.+...+.+.|.+.. .+ +|++||+.
T Consensus 442 ~~LSgGe~qrv~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~-viivsHd~ 500 (552)
T TIGR03719 442 GQLSGGERNRVHLAKTLKS----GGNVLLLDEPTNDLDVETLRALEEALLEFA----GC-AVVISHDR 500 (552)
T ss_pred hhCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHCC----Ce-EEEEeCCH
Confidence 4599999999999998764 578999999999999999999998887652 33 89999984
No 396
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.63 E-value=0.25 Score=57.73 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhH
Q 001581 369 KIEKLGSQILELGVQANQKRLQKSEKEKILNQNKLTLRQCSDRLKDMEDK 418 (1050)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~ 418 (1050)
.++++...+..++.++..+...+...+..+.++...+......++.|+.+
T Consensus 1226 ~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~ 1275 (1758)
T KOG0994|consen 1226 DIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQRE 1275 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHH
Confidence 33344444444444444444444444444444443333333333333333
No 397
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.62 E-value=9.5e-05 Score=67.99 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=26.0
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHH
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|+-.
T Consensus 16 l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 16 LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 34566666654 8899999999999999998543
No 398
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=8.7e-05 Score=85.11 Aligned_cols=62 Identities=11% Similarity=0.214 Sum_probs=53.1
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..|+. +.++++|||++++||+.++..+.+.|.+.+. .+.=+|++||+.
T Consensus 142 ~~LSgGqkqrv~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~~~tvi~~tH~~ 203 (506)
T PRK13549 142 GNLGLGQQQLVEIAKALNK----QARLLILDEPTASLTESETAVLLDIIRDLKA--HGIACIYISHKL 203 (506)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCcH
Confidence 4599999999999998874 4679999999999999999999999988754 245689999983
No 399
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.61 E-value=9.9e-05 Score=79.08 Aligned_cols=63 Identities=11% Similarity=0.124 Sum_probs=53.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. ..++++|||++++||...+..+...|.+... ..+.-+|++||+.
T Consensus 133 ~~LSgGq~QRvaLARaL~~----~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~~~tvi~vTHd~ 195 (353)
T TIGR03265 133 GQLSGGQQQRVALARALAT----SPGLLLLDEPLSALDARVREHLRTEIRQLQR-RLGVTTIMVTHDQ 195 (353)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEcCCH
Confidence 4599999999999998885 3579999999999999999999888887654 2356899999994
No 400
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=7.8e-05 Score=70.22 Aligned_cols=34 Identities=41% Similarity=0.589 Sum_probs=27.1
Q ss_pred cceEEEecCC-ceeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGS-RLNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~-~~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+..+.|.+ .+++|+|||||||||++++|...+
T Consensus 15 l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3355566655 499999999999999999997654
No 401
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.61 E-value=0.00012 Score=75.48 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=51.1
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.|||||+.+++||-.++- +.++++|||++++||+.+...+.+.|..... +.-+|++||+.
T Consensus 156 ~LS~G~~qrl~laral~~----~p~llllDEPt~gLD~~~~~~l~~~l~~~~~---~~tiii~sh~~ 215 (257)
T cd03288 156 NFSVGQRQLFCLARAFVR----KSSILIMDEATASIDMATENILQKVVMTAFA---DRTVVTIAHRV 215 (257)
T ss_pred cCCHHHHHHHHHHHHHhc----CCCEEEEeCCccCCCHHHHHHHHHHHHHhcC---CCEEEEEecCh
Confidence 489999999999887763 4589999999999999999999888876533 67899999985
No 402
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.61 E-value=8.4e-05 Score=73.70 Aligned_cols=47 Identities=28% Similarity=0.231 Sum_probs=31.6
Q ss_pred CceEEEEEEeccc---ccceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 20 PGNIIEIELHNFM---TFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 20 ~~~i~~l~l~nF~---~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
|..+..+... |. .+.+.++.+.+| +.+|+|||||||||++..|+-.+
T Consensus 2 ~l~~~~l~~~-~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 2 MLEGEDLACV-RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEEeEEEE-ECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445555543 22 233555665544 88999999999999999987543
No 403
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.61 E-value=8.3e-05 Score=87.08 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=53.9
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..||||||.+++||-.|+. ..++++|||++++||+.....+.++|.++... .+.=+|+|||..
T Consensus 166 ~~~LSgGq~QRv~iA~AL~~----~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~-~g~tvi~itHdl 229 (623)
T PRK10261 166 PHQLSGGMRQRVMIAMALSC----RPAVLIADEPTTALDVTIQAQILQLIKVLQKE-MSMGVIFITHDM 229 (623)
T ss_pred CccCCHHHHHHHHHHHHHhC----CCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCH
Confidence 45699999999999998884 36699999999999999999999988887641 245699999984
No 404
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=97.61 E-value=0.00015 Score=66.59 Aligned_cols=72 Identities=24% Similarity=0.293 Sum_probs=50.7
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCC-CCCCCCeEE
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPD-LEYSEACSI 1016 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~-l~~~~~~~~ 1016 (1050)
.||||||-++-+|=.||. .|. |.+|||+++|.||-.+.-+-+.+..+.. ..==++||-|.... +...+..-|
T Consensus 139 sLSGGERRR~EIARaLa~---~P~-fiLLDEPFAGVDPiaV~dIq~iI~~L~~---rgiGvLITDHNVREtL~i~dRaYI 211 (243)
T COG1137 139 SLSGGERRRVEIARALAA---NPK-FILLDEPFAGVDPIAVIDIQRIIKHLKD---RGIGVLITDHNVRETLDICDRAYI 211 (243)
T ss_pred ccccchHHHHHHHHHHhc---CCC-EEEecCCccCCCchhHHHHHHHHHHHHh---CCceEEEccccHHHHHhhhheEEE
Confidence 499999999999999986 333 8999999999999988875444444443 34457889775332 233344433
No 405
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.61 E-value=6.9e-05 Score=72.51 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=32.2
Q ss_pred ceEEEEEEecccccceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 21 ~~i~~l~l~nF~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.++.+... | -+.+.++.+.+| +.+|+|||||||||++..|.-.+
T Consensus 5 l~~~~l~~~-~-~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 5 LEVRGLSVK-G-AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEeccEEE-e-eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444433 2 455666777655 88999999999999999987554
No 406
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=7.1e-05 Score=74.74 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=28.1
Q ss_pred cceEEEecCCceeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSRLNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.+.+|+.+|+|||||||||++.+|+-.+
T Consensus 16 l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 16 LDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCC
Confidence 4466677777899999999999999999997443
No 407
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.61 E-value=0.00011 Score=73.94 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=53.0
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.|||||+.+++||..++. +.|+.+|||++++||...+..+...|.+... ..+.-+|++||..
T Consensus 141 ~lS~G~~qrv~laral~~----~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sh~~ 202 (220)
T TIGR02982 141 NLSGGQKQRVAIARALVH----RPKLVLADEPTAALDSKSGRDVVELMQKLAR-EQGCTILIVTHDN 202 (220)
T ss_pred hCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCH
Confidence 499999999999987764 3589999999999999999999998887754 2368999999996
No 408
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.60 E-value=0.00011 Score=86.61 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=52.2
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.||||||.+++||=.|. .+.|+++|||++++||..+++.+.+.|.+... +.=+|+|||+.
T Consensus 485 ~LSGGQrQRialARAll----~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~---~~TvIiItHrl 544 (588)
T PRK11174 485 GLSVGQAQRLALARALL----QPCQLLLLDEPTASLDAHSEQLVMQALNAASR---RQTTLMVTHQL 544 (588)
T ss_pred CCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC---CCEEEEEecCh
Confidence 39999999999987553 36799999999999999999999998877654 67899999996
No 409
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.60 E-value=7.6e-05 Score=73.88 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=26.4
Q ss_pred ceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 35 DHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 35 ~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
.+.++.+.+| +.+|+|||||||||++..|+-.+
T Consensus 18 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred ecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3556666655 99999999999999999887544
No 410
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.60 E-value=0.0001 Score=84.37 Aligned_cols=63 Identities=17% Similarity=0.281 Sum_probs=53.9
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..||||||.+++||..|+. +.++++|||++++||+.++..+.++|.+.+.. +.=+|++||+.
T Consensus 138 ~~~LSgG~~qrv~la~aL~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiiivtHd~ 200 (510)
T PRK15439 138 AGSLEVADRQIVEILRGLMR----DSRILILDEPTASLTPAETERLFSRIRELLAQ--GVGIVFISHKL 200 (510)
T ss_pred hhhCCHHHHHHHHHHHHHHc----CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 34599999999999998874 46799999999999999999999999887652 55699999984
No 411
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=7.3e-05 Score=76.93 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=25.5
Q ss_pred eEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.++.+.+| +.+|+|||||||||++.+|...+
T Consensus 21 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 21 GVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 455555554 89999999999999999997543
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.60 E-value=0.00011 Score=87.76 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=53.5
Q ss_pred cccCchhHHHHHHHHHHHhcccCCC-CceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNC-PFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~-Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. .|. .++||||+.+|||+..+..+++.|.++.. .+.-+|+|||+.
T Consensus 486 ~tLSGGE~QRv~LA~aL~~---~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~--~G~TVIvVeHd~ 549 (924)
T TIGR00630 486 GTLSGGEAQRIRLATQIGS---GLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD--LGNTVIVVEHDE 549 (924)
T ss_pred CcCCHHHHHHHHHHHHHhh---CCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh--CCCEEEEEECCH
Confidence 4599999999999988873 222 58999999999999999999999988765 367899999993
No 413
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=8.8e-05 Score=75.66 Aligned_cols=32 Identities=34% Similarity=0.419 Sum_probs=25.4
Q ss_pred eEEEecCC-ceeEEEcCCCCChhHHHHHHHHHh
Q 001581 36 HLICKPGS-RLNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 36 ~~~i~f~~-~~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.++.|.+ .+.+|+|||||||||++.+|+..+
T Consensus 20 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 20 DVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45566654 489999999999999999997543
No 414
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.59 E-value=0.00011 Score=68.28 Aligned_cols=72 Identities=18% Similarity=0.317 Sum_probs=55.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEA 1013 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~ 1013 (1050)
..||||||+ |++|+||. ..|.-..+|||=+|+|||.....+++.=.++-. ..+-=-++|||.+=.-+.|++.
T Consensus 147 glLSGGQRQ--alsL~MAt--l~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~-~~klTtlMVTHnm~~Al~yG~R 218 (263)
T COG1101 147 GLLSGGQRQ--ALSLLMAT--LHPPKILLLDEHTAALDPKTAEFVMELTAKIVE-EHKLTTLMVTHNMEDALDYGNR 218 (263)
T ss_pred hhccchHHH--HHHHHHHh--cCCCcEEEecchhhcCCcchHHHHHHHHHHHHH-hcCCceEEEeccHHHHHhhCCe
Confidence 349999998 56666775 456668999999999999999988876555443 2456679999998667788665
No 415
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.59 E-value=0.00011 Score=85.10 Aligned_cols=59 Identities=25% Similarity=0.398 Sum_probs=51.0
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
||||||.+++||=.|. .+.|+++|||++++||..++..+.+.|.+... +.=+|+|||+.
T Consensus 471 LSGGQrQRiaiARall----~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~---~~TvIiItHrl 529 (529)
T TIGR02868 471 LSGGERQRLALARALL----ADAPILLLDEPTEHLDAGTESELLEDLLAALS---GKTVVVITHHL 529 (529)
T ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC---CCEEEEEecCC
Confidence 8999999999987554 57899999999999999999999998886543 67799999973
No 416
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.58 E-value=4.6e-05 Score=70.03 Aligned_cols=31 Identities=39% Similarity=0.557 Sum_probs=23.8
Q ss_pred EEEecCC-ceeEEEcCCCCChhHHHHHHHHHh
Q 001581 37 LICKPGS-RLNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 37 ~~i~f~~-~~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+++.+.+ .+.+|+|||||||||++.+|+..+
T Consensus 4 v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 4 VSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEEccCCCccccceeeecccc
Confidence 4445443 389999999999999998876544
No 417
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.58 E-value=0.00013 Score=78.99 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=52.9
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..||||||.+++||-.|+- ..|+++|||.+.+||......+.+.|.+++. .+.-+|++||..
T Consensus 137 ~~~LSgGerQRv~IArAL~~----~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~--~g~TIIivsHdl 199 (402)
T PRK09536 137 VTSLSGGERQRVLLARALAQ----ATPVLLLDEPTASLDINHQVRTLELVRRLVD--DGKTAVAAIHDL 199 (402)
T ss_pred hhhCCHHHHHHHHHHHHHHc----CCCEEEEECCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEECCH
Confidence 45699999999999998873 3579999999999999999999998888764 255688888873
No 418
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.58 E-value=0.00011 Score=84.41 Aligned_cols=62 Identities=13% Similarity=0.151 Sum_probs=53.0
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||-.|+. +.++++|||++++||+.++..+.+.|.+.+.. +.=+|++||..
T Consensus 144 ~~LSgG~~qrv~ia~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tiiivsHd~ 205 (510)
T PRK09700 144 ANLSISHKQMLEIAKTLML----DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE--GTAIVYISHKL 205 (510)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence 4599999999999998874 46899999999999999999999999887652 45588899883
No 419
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.57 E-value=0.00012 Score=85.43 Aligned_cols=75 Identities=21% Similarity=0.349 Sum_probs=58.3
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeEEEE
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSILN 1018 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~~~~~~ 1018 (1050)
||||||+++++|=.|- .++|++||||.++++|..++..+.+.|..... ++..|+|+|.+ +.+...| +|++
T Consensus 466 LSgGQrQrlaiARall----~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~---~rT~iiIaHRl-sti~~aD--~IiV 535 (567)
T COG1132 466 LSGGQRQRLAIARALL----RNPPILILDEATSALDTETEALIQDALKKLLK---GRTTLIIAHRL-STIKNAD--RIIV 535 (567)
T ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeccccccCHHhHHHHHHHHHHHhc---CCEEEEEeccH-hHHHhCC--EEEE
Confidence 8999999999988654 44699999999999999999999999886664 56888899997 3333323 4443
Q ss_pred EecCC
Q 001581 1019 IMNGP 1023 (1050)
Q Consensus 1019 ~~~~~ 1023 (1050)
.-+|.
T Consensus 536 l~~G~ 540 (567)
T COG1132 536 LDNGR 540 (567)
T ss_pred EECCE
Confidence 34554
No 420
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00012 Score=77.44 Aligned_cols=66 Identities=26% Similarity=0.310 Sum_probs=45.2
Q ss_pred CCccccccccccCCCCCCCCceEEEEEEeccc--------ccceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 1 MDLPRVKRLKVSRGEDDYMPGNIIEIELHNFM--------TFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~i~~l~l~nF~--------~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
||---.|++|+-.-..+=.+..+..|... |. .+.+.++.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~nl~~~-y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~ 76 (320)
T PRK13631 2 MDYFMKKKLKVPNPLSDDIILRVKNLYCV-FDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred hhhhhhcCCCCCCCCCCCceEEEEeEEEE-eCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33345688888655533345666666653 21 344666666655 99999999999999999997544
No 421
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.57 E-value=0.00016 Score=72.56 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=49.7
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHH-HHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQ-LVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~-l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. +.++++|||++++||+.++..+.+. +...... .+.-+|++||..
T Consensus 139 ~~LS~G~~qrv~laral~~----~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~-~~~tii~~sH~~ 202 (218)
T cd03290 139 INLSGGQRQRICVARALYQ----NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD-DKRTLVLVTHKL 202 (218)
T ss_pred CcCCHHHHHHHHHHHHHhh----CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc-CCCEEEEEeCCh
Confidence 4599999999999887774 3579999999999999999988872 4444331 256788888885
No 422
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.56 E-value=0.23 Score=55.58 Aligned_cols=271 Identities=11% Similarity=0.130 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001581 616 GNEIERLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESIEKE 695 (1050)
Q Consensus 616 ~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~l~~l~~~ 695 (1050)
+.....++..+..++.++..++..+..++.+.+.+...+..++.++.+.+.++.....+...+...+.....++-..-+.
T Consensus 91 Rrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~ 170 (1265)
T KOG0976|consen 91 RRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGED 170 (1265)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHH
Q ss_pred --------ccHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHH
Q 001581 696 --------DDINTALAKLVDQAADLNIQQFKYAI-------------------------------EIKNLLVEIVSCKWS 736 (1050)
Q Consensus 696 --------~~~~~~~~~l~~~~~~l~~~~~~~~~-------------------------------~~~~l~~~~~~~~~~ 736 (1050)
.+...+....-++....+........ ++..-.+-+..+...
T Consensus 171 L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~ 250 (1265)
T KOG0976|consen 171 LHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKT 250 (1265)
T ss_pred HhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhh
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHH----HHhcccC
Q 001581 737 YAEKHMASIEFDAKIRELEFNLKQHEKLALQASLHYEDCKKEVEHCRKHLSDAKRQAESIAFITPELEK----EFLEMPT 812 (1050)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~ 812 (1050)
...+.+....++.--+.+.....+++.....+..++.+....+..+...+..+++..........+... +..++..
T Consensus 251 ~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltr 330 (1265)
T KOG0976|consen 251 CSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTR 330 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Q ss_pred CHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001581 813 TIEELEAAIQDNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNLVA 886 (1050)
Q Consensus 813 ~~~~l~~~i~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~ 886 (1050)
....++..+.+.+.+.+.+.....++..+...+......+.......+..+..|.....++.+.+...-..+|.
T Consensus 331 qkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~ 404 (1265)
T KOG0976|consen 331 QKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFR 404 (1265)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
No 423
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.56 E-value=9.3e-05 Score=75.88 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=26.7
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 33555666655 99999999999999999997443
No 424
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.56 E-value=0.00015 Score=74.72 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=51.8
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.|||||+.+++||-.++. +.++++|||++++||+.....+.+.|.+... ++-+|+|||..
T Consensus 138 ~LS~G~~qrl~LaRall~----~p~illlDEpts~LD~~~~~~l~~~l~~~~~---~~tii~isH~~ 197 (275)
T cd03289 138 VLSHGHKQLMCLARSVLS----KAKILLLDEPSAHLDPITYQVIRKTLKQAFA---DCTVILSEHRI 197 (275)
T ss_pred CCCHHHHHHHHHHHHHhc----CCCEEEEECccccCCHHHHHHHHHHHHHhcC---CCEEEEEECCH
Confidence 389999999999987764 4689999999999999999999888886643 67899999995
No 425
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.56 E-value=9.9e-05 Score=80.54 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=55.4
Q ss_pred cccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 935 SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 935 ~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
-+++||||+|.++++|..+|. +|. ..|+||++.+||......+++.|.++.. ..+.=+|||||.+
T Consensus 151 yPheLSGG~rQRv~iAmALa~---~P~-LLIaDEPTTaLDvt~q~qIL~llk~l~~-e~g~a~l~ITHDl 215 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALAL---KPK-LLIADEPTTALDVTTQAQILDLLKDLQR-ELGMAVLFITHDL 215 (539)
T ss_pred CCcccCchHHHHHHHHHHHhC---CCC-EEEECCCccccCHHHHHHHHHHHHHHHH-HcCcEEEEEcCCH
Confidence 356799999999999998884 343 6799999999999999999998888764 4678899999995
No 426
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.56 E-value=8.2e-05 Score=69.52 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=20.5
Q ss_pred ceeEEEcCCCCChhHHHHHHHHH
Q 001581 44 RLNLVIGPNGSGKSSLVCAIALA 66 (1050)
Q Consensus 44 ~~~~I~G~NGsGKSti~~Ai~~~ 66 (1050)
.+.+|+||.||||||++.+|...
T Consensus 29 evv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 48999999999999999998753
No 427
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=9.2e-05 Score=79.93 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=52.8
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..|||||+.+++||-.|+. . .++++|||.+++||...+..+...|.+.... .+.-+|++||+.
T Consensus 148 ~~LSgGq~QRVaLARAL~~---~-P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~ 210 (377)
T PRK11607 148 HQLSGGQRQRVALARSLAK---R-PKLLLLDEPMGALDKKLRDRMQLEVVDILER-VGVTCVMVTHDQ 210 (377)
T ss_pred hhCCHHHHHHHHHHHHHhc---C-CCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCH
Confidence 4599999999999998885 2 4689999999999999999988888776542 357899999984
No 428
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.55 E-value=0.00019 Score=63.96 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=53.8
Q ss_pred cccccCchhHHHHHHHHHHHhcccCCCC-ceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 935 SAHHQSGGERSVSTILYLVSLQDLTNCP-FRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 935 ~~~~lSGGErs~~~lall~al~~~~~~P-f~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.+.+|||||+.++|||-.||. .| ..+-||.+-+||.....++.++|-.+.. ...+=.+++||+-
T Consensus 143 yP~qLSGGEQQRVAiARAfa~-----~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr-e~G~TlVlVTHD~ 207 (228)
T COG4181 143 YPAQLSGGEQQRVALARAFAG-----RPDVLFADEPTGNLDRATGDKIADLLFALNR-ERGTTLVLVTHDP 207 (228)
T ss_pred CccccCchHHHHHHHHHHhcC-----CCCEEeccCCCCCcchhHHHHHHHHHHHHhh-hcCceEEEEeCCH
Confidence 356799999999999998873 55 4678999999999999999998887654 4578899999983
No 429
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.55 E-value=0.27 Score=56.05 Aligned_cols=269 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001581 616 GNEIERLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESIEKE 695 (1050)
Q Consensus 616 ~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~l~~l~~~ 695 (1050)
.........++....+++..++.++..+.........+.................+..++..++..+.............
T Consensus 122 ~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee 201 (522)
T PF05701_consen 122 REQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEE 201 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------------ccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q 001581 696 ------------DDINTALAKLVDQAADLNIQQ---FKYAIEIKNLLVEIVSCKWSYAEKHM------------------ 742 (1050)
Q Consensus 696 ------------~~~~~~~~~l~~~~~~l~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~------------------ 742 (1050)
......+......+..|..++ ..+..++......+..+..++.....
T Consensus 202 ~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~ 281 (522)
T PF05701_consen 202 RIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQS 281 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHhcccCCHHHHHHHHH
Q 001581 743 ASIEFDAKIRELEFNLKQHEKLALQASLHYEDCKKEVEHCRKHLSDAKRQAESIAFITPELEKEFLEMPTTIEELEAAIQ 822 (1050)
Q Consensus 743 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 822 (1050)
.+..+..+++.....+.........+......++.++...+..+..+.............+..++......+..+...-.
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~ 361 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE 361 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Q ss_pred HHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001581 823 DNISQANSIFFLNQNILQEYEHRQRQIEDLSTKQEADKKELKRFLAEIDALKEKWLPTLRNL 884 (1050)
Q Consensus 823 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~ 884 (1050)
.....+..+......+..+.+..+............++.........+.....++.......
T Consensus 362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ 423 (522)
T PF05701_consen 362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA 423 (522)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 430
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.55 E-value=0.00012 Score=83.73 Aligned_cols=63 Identities=17% Similarity=0.264 Sum_probs=53.3
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
+..||||||.+++||..|+. +.++++|||++++||+.++..+.+.|.+.... +.=+|++||+.
T Consensus 139 ~~~LSgG~~qrv~la~al~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~~tvii~sHd~ 201 (501)
T PRK10762 139 VGELSIGEQQMVEIAKVLSF----ESKVIIMDEPTDALTDTETESLFRVIRELKSQ--GRGIVYISHRL 201 (501)
T ss_pred hhhCCHHHHHHHHHHHHHhc----CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 34599999999999998874 47799999999999999999999988887542 55689999883
No 431
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=0.00013 Score=75.13 Aligned_cols=49 Identities=16% Similarity=0.277 Sum_probs=34.3
Q ss_pred CCceEEEEEEeccc---ccceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHhc
Q 001581 19 MPGNIIEIELHNFM---TFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALALG 68 (1050)
Q Consensus 19 ~~~~i~~l~l~nF~---~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L~ 68 (1050)
++..+..|.+. |. -+.+.++.+.+| +.+|+|||||||||++.+|+..++
T Consensus 2 ~~l~~~~v~~~-~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (250)
T PRK14266 2 YRIEVENLNTY-FDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMND 54 (250)
T ss_pred cEEEEEeEEEE-eCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 44555666543 22 233556666655 899999999999999999976544
No 432
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.54 E-value=0.00012 Score=73.36 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=25.9
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHH
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1050)
+.+..+.+.+| +.+|+|||||||||++.+|+-.
T Consensus 18 l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33555666554 8899999999999999998743
No 433
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00013 Score=74.94 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=26.7
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34556666554 89999999999999999998443
No 434
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.54 E-value=0.00014 Score=85.39 Aligned_cols=59 Identities=25% Similarity=0.347 Sum_probs=51.8
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
||||||.+++||=.|. .+.|+++|||++++||+.++..+.+.|..... +.-+|+|||+.
T Consensus 472 LSgGq~QRialARall----~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~---~~tvIiitHr~ 530 (588)
T PRK13657 472 LSGGERQRLAIARALL----KDPPILILDEATSALDVETEAKVKAALDELMK---GRTTFIIAHRL 530 (588)
T ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc---CCEEEEEEecH
Confidence 8999999988887543 47899999999999999999999998877643 78999999995
No 435
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.54 E-value=0.00012 Score=73.44 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=26.5
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.+.|| +.+|+|||||||||++.+|+-.+
T Consensus 16 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33555666555 89999999999999999997443
No 436
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.53 E-value=0.00011 Score=76.56 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=27.0
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|+..+
T Consensus 17 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 44566666665 89999999999999999887443
No 437
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.00019 Score=68.76 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=65.1
Q ss_pred eEEEecCCc-eeEEEcCCCCChhHHHHHHHHHhcCCCcc-cccccchhhhhhcCCceeEEEEEEEeCCCCceEEEEEEEe
Q 001581 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIALALGGDTQL-LGRATSIGAYVKRGEESGYIKISLRGDTKEEHLTIMRKID 113 (1050)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L~g~~~~-~~r~~~~~~~i~~g~~~a~v~i~~~~~~~~~~~~i~R~~~ 113 (1050)
++++++.+| .-.|+|+.||||||+..+|....-..... .-.|..+..--+.......|-++|.+ ....+.=.+++.
T Consensus 25 ~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQD--p~~SLnP~~tv~ 102 (252)
T COG1124 25 NVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQD--PYSSLNPRRTVG 102 (252)
T ss_pred ceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecC--CccccCcchhHH
Confidence 455555544 66899999999999999987554211110 00010111111111335678889984 433332222222
Q ss_pred cCCceeEEECCeecCHHHHHHHHHHcCcccc---cccccccchhhHHH
Q 001581 114 TRNKSEWFFNGKVVPKGEVLEITKRFNIQVN---NLTQFLPQDRVCEF 158 (1050)
Q Consensus 114 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~---~~~~~l~q~~~~~~ 158 (1050)
+-=...+.++|-......+.+++..+|++.. .+..-++.|+...+
T Consensus 103 ~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRi 150 (252)
T COG1124 103 RILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRI 150 (252)
T ss_pred HHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHH
Confidence 2111235556766666669999999999832 22233555655444
No 438
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.00013 Score=75.51 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=24.8
Q ss_pred EEEecCC-ceeEEEcCCCCChhHHHHHHHHHh
Q 001581 37 LICKPGS-RLNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 37 ~~i~f~~-~~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
..+++.+ .+.+|+|||||||||+|..|+...
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455544 499999999999999999997554
No 439
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.52 E-value=0.00026 Score=82.16 Aligned_cols=79 Identities=18% Similarity=0.341 Sum_probs=60.5
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeEEEE
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSILN 1018 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~~~~~~ 1018 (1050)
||||+|.+++||-.+- .+-|..+|||.+++||+.+++.+.+.|.+... ++=+|+|||++ +-+.+.+ .|+
T Consensus 610 LSGGQrQrlalARaLl----~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~---~~T~I~IaHRl-~ti~~ad--rIi- 678 (709)
T COG2274 610 LSGGQRQRLALARALL----SKPKILLLDEATSALDPETEAIILQNLLQILQ---GRTVIIIAHRL-STIRSAD--RII- 678 (709)
T ss_pred CCHHHHHHHHHHHHhc----cCCCEEEEeCcccccCHhHHHHHHHHHHHHhc---CCeEEEEEccc-hHhhhcc--EEE-
Confidence 9999999999988654 45678999999999999999999999998875 67899999996 2222222 344
Q ss_pred EecCCCCCCC
Q 001581 1019 IMNGPWIEQP 1028 (1050)
Q Consensus 1019 ~~~~~~~~~~ 1028 (1050)
+|.+..+.+.
T Consensus 679 Vl~~Gkiv~~ 688 (709)
T COG2274 679 VLDQGKIVEQ 688 (709)
T ss_pred EccCCceecc
Confidence 4655555443
No 440
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.52 E-value=0.00017 Score=84.87 Aligned_cols=60 Identities=22% Similarity=0.350 Sum_probs=52.0
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.||||||.+++||=.+. ...|.++|||++++||+.++..+++.|..... +.=+|+|||..
T Consensus 480 ~LSGGqrQRi~LARall----~~~~ililDEptsaLD~~t~~~i~~~l~~~~~---~~tvI~VtHr~ 539 (582)
T PRK11176 480 LLSGGQRQRIAIARALL----RDSPILILDEATSALDTESERAIQAALDELQK---NRTSLVIAHRL 539 (582)
T ss_pred cCCHHHHHHHHHHHHHH----hCCCEEEEECccccCCHHHHHHHHHHHHHHhC---CCEEEEEecch
Confidence 38999999999887553 35789999999999999999999999987754 68899999996
No 441
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.51 E-value=0.00016 Score=84.31 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=52.5
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.||||||.+++||-.+. .+.|+++|||++++||+.++..+.+.|.+... +.-+|+|||+.
T Consensus 451 ~LSgGq~qRi~lARall----~~~~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tii~itH~~ 510 (569)
T PRK10789 451 MLSGGQKQRISIARALL----LNAEILILDDALSAVDGRTEHQILHNLRQWGE---GRTVIISAHRL 510 (569)
T ss_pred cCCHHHHHHHHHHHHHh----cCCCEEEEECccccCCHHHHHHHHHHHHHHhC---CCEEEEEecch
Confidence 38999999999988665 46899999999999999999999999887653 67799999995
No 442
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.51 E-value=0.00017 Score=84.06 Aligned_cols=60 Identities=25% Similarity=0.381 Sum_probs=52.3
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.||||||.+++||-.|. .+.|+++|||++++||+.+++.+.+.|.+... +.=+|+|||+.
T Consensus 471 ~LSgGq~qrl~lARall----~~p~ililDEpts~LD~~~~~~i~~~l~~~~~---~~tvI~isH~~ 530 (585)
T TIGR01192 471 RLSGGERQRLAIARAIL----KNAPILVLDEATSALDVETEARVKNAIDALRK---NRTTFIIAHRL 530 (585)
T ss_pred CCCHHHHHHHHHHHHHh----cCCCEEEEECCccCCCHHHHHHHHHHHHHHhC---CCEEEEEEcCh
Confidence 49999999999998776 46889999999999999999999988876643 67799999995
No 443
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.51 E-value=0.00014 Score=74.06 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=26.1
Q ss_pred ceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 35 DHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 35 ~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
.+.++.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 20 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 20 KDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3555666544 88999999999999999987544
No 444
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.51 E-value=8.5e-05 Score=72.66 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=26.2
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHH
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|.-.
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34556666655 9999999999999999988643
No 445
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.51 E-value=0.00014 Score=74.78 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=26.2
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+..+.+.+| +.+|+|||||||||++.+|.-.+
T Consensus 19 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 33555565544 88999999999999999987543
No 446
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.50 E-value=0.00015 Score=75.01 Aligned_cols=32 Identities=25% Similarity=0.533 Sum_probs=26.2
Q ss_pred eEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.++.+.+| +.+|+|||||||||++..|+..+
T Consensus 30 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 30 NINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 555666555 89999999999999999998654
No 447
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.50 E-value=0.00014 Score=74.97 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=27.0
Q ss_pred ceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 35 DHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 35 ~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
.+..+.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 23 YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred eeeEEEECCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 3566666665 99999999999999999997544
No 448
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.50 E-value=0.00013 Score=75.15 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=25.5
Q ss_pred eEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.++.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 21 GIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 555666555 88999999999999999987443
No 449
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.50 E-value=0.00014 Score=73.46 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=25.4
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHH
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|.-
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 34556666555 899999999999999998853
No 450
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.50 E-value=0.00018 Score=86.33 Aligned_cols=59 Identities=24% Similarity=0.323 Sum_probs=52.6
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
||||||.+++||=.|. .+.|+++|||++++||+.++..+.+.|.+... +.-+|+|||+.
T Consensus 602 LSgGQrQRlalARall----~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~---~~T~iiItHrl 660 (694)
T TIGR03375 602 LSGGQRQAVALARALL----RDPPILLLDEPTSAMDNRSEERFKDRLKRWLA---GKTLVLVTHRT 660 (694)
T ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC---CCEEEEEecCH
Confidence 8999999999988654 56799999999999999999999999887654 78999999996
No 451
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.49 E-value=0.17 Score=53.56 Aligned_cols=68 Identities=13% Similarity=0.282 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 619 IERLRSKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRK 686 (1050)
Q Consensus 619 ~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~~~ 686 (1050)
+.....++..++..+.....+...++.++..++.++..+..++......+..+.+.+..+...+..++
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555554444444444444444444444443
No 452
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.49 E-value=7.7e-05 Score=74.97 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=26.9
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 20 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 33555666555 99999999999999999997554
No 453
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00014 Score=75.00 Aligned_cols=32 Identities=38% Similarity=0.536 Sum_probs=25.4
Q ss_pred eEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+..+.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 20 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 20 DLSLSLPTGKITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred eeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 445555555 88999999999999999997543
No 454
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.49 E-value=0.16 Score=59.09 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001581 702 LAKLVDQAADLNIQQFKYAIEI 723 (1050)
Q Consensus 702 ~~~l~~~~~~l~~~~~~~~~~~ 723 (1050)
+..++.++.+.......++.++
T Consensus 490 l~~LEkrL~eE~~~R~~lEkQL 511 (697)
T PF09726_consen 490 LQQLEKRLAEERRQRASLEKQL 511 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 455
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.49 E-value=0.00014 Score=75.04 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=26.5
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 22 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33555565544 89999999999999999997544
No 456
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.49 E-value=2.6e-05 Score=74.50 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=0.0
Q ss_pred ecccccc---eEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 29 HNFMTFD---HLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 29 ~nF~~~~---~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
..|+.+. +++++..+| ++.|+|||||||||+++-|.-.+
T Consensus 12 k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~ 54 (250)
T COG0411 12 KRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY 54 (250)
T ss_pred eecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc
No 457
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.49 E-value=0.00015 Score=85.10 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=50.5
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..|+. +.++++|||++.+||......+.+.|.+. . . =+|+|||+.
T Consensus 429 ~~LSgGekqRl~La~~l~~----~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~---g-tvi~vSHd~ 487 (638)
T PRK10636 429 RRFSGGEKARLVLALIVWQ----RPNLLLLDEPTNHLDLDMRQALTEALIDF-E---G-ALVVVSHDR 487 (638)
T ss_pred hhCCHHHHHHHHHHHHHhc----CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C---C-eEEEEeCCH
Confidence 3499999999999998874 57899999999999999999999988765 1 3 488999984
No 458
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00017 Score=73.70 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=31.9
Q ss_pred ceEEEEEEe--cccccceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 21 GNIIEIELH--NFMTFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 21 ~~i~~l~l~--nF~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
..|..|... +..-+.+.++.+.+| +.+|+|||||||||++..|.-.+
T Consensus 13 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445555443 111233566666655 99999999999999999987543
No 459
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00012 Score=76.12 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=26.9
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|+..+
T Consensus 25 l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34556666655 99999999999999999997543
No 460
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.00017 Score=71.91 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=26.8
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|.-.+
T Consensus 16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34556666655 88999999999999999998543
No 461
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.47 E-value=0.00011 Score=74.96 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=26.7
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 16 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 34556666555 88999999999999999997543
No 462
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.47 E-value=0.00012 Score=74.77 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=61.9
Q ss_pred ccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCeE
Q 001581 936 AHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACS 1015 (1050)
Q Consensus 936 ~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~~~ 1015 (1050)
+++||||||.++++|..+|- .| -+.|-||.+.+||..--..++++|.++-. ..+.=++||||.+=---.+.+.+.
T Consensus 155 PHeLSGGqRQRVMIAMALan---~P-~lLIADEPTTALDVtvQaQIL~Ll~~Lq~-~~gMa~lfITHDL~iVr~~ADrV~ 229 (534)
T COG4172 155 PHELSGGQRQRVMIAMALAN---EP-DLLIADEPTTALDVTVQAQILDLLKELQA-ELGMAILFITHDLGIVRKFADRVY 229 (534)
T ss_pred CcccCcchhhHHHHHHHHcC---CC-CeEeecCCcchhhhhhHHHHHHHHHHHHH-HhCcEEEEEeccHHHHHHhhhhEE
Confidence 57899999999999987773 22 27899999999999988889988887643 357889999999611113455555
Q ss_pred EEEEecCCCCC
Q 001581 1016 ILNIMNGPWIE 1026 (1050)
Q Consensus 1016 ~~~~~~~~~~~ 1026 (1050)
|++ .|.-++
T Consensus 230 VM~--~G~ivE 238 (534)
T COG4172 230 VMQ--HGEIVE 238 (534)
T ss_pred EEe--ccEEee
Confidence 552 554444
No 463
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00016 Score=73.52 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=26.8
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34556666655 89999999999999999997443
No 464
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.47 E-value=0.15 Score=54.05 Aligned_cols=72 Identities=14% Similarity=0.273 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001581 624 SKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEIINIVQIEKRKRREMENHINLRKRKLESIEKE 695 (1050)
Q Consensus 624 ~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~l~~l~~~ 695 (1050)
+++.+...++..++..+.....+...++.++..++.++..+..++......+..+...|..+...+..++.+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 556667777777777777777777777777777777777777666666666666666666666666555543
No 465
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.47 E-value=0.00019 Score=84.36 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=52.3
Q ss_pred cCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 939 QSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 939 lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
||||||.+.+||=.+. .++|.++|||++++||+.+++.+.+.|.+... +.=+|+|||+.
T Consensus 477 LSGGqrQRialARaLl----~~~~illlDEpts~LD~~t~~~i~~~l~~~~~---~~tvIivtHr~ 535 (592)
T PRK10790 477 LSVGQKQLLALARVLV----QTPQILILDEATANIDSGTEQAIQQALAAVRE---HTTLVVIAHRL 535 (592)
T ss_pred CCHHHHHHHHHHHHHH----hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEecch
Confidence 8999999999887554 46799999999999999999999999987654 68899999996
No 466
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.47 E-value=0.4 Score=56.15 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 841 EYEHRQRQIEDLSTKQEADKKELKRFLAEI 870 (1050)
Q Consensus 841 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i 870 (1050)
.|..-...++....++..|...+..+...|
T Consensus 1718 ~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1718 EYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444444444444443333
No 467
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.47 E-value=0.0002 Score=83.07 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=52.4
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.||||||.+++||=.+ +.+.|+++|||++++||+.++..+.+.|.+... .+..+|+|||+.
T Consensus 454 ~LSgGq~qrl~lARal----l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~~tvi~ith~~ 514 (544)
T TIGR01842 454 TLSGGQRQRIALARAL----YGDPKLVVLDEPNSNLDEEGEQALANAIKALKA--RGITVVVITHRP 514 (544)
T ss_pred CCCHHHHHHHHHHHHH----hcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh--CCCEEEEEeCCH
Confidence 3899999999998765 346799999999999999999999998887642 267899999996
No 468
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.47 E-value=0.00016 Score=73.04 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=33.9
Q ss_pred CceEEEEEEe--c---ccccceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 20 PGNIIEIELH--N---FMTFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 20 ~~~i~~l~l~--n---F~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
++.+..+... + ...+.+.++.+.+| +.+|+|||||||||++.+|+..+
T Consensus 11 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 11 IVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred eEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4566666654 1 12345666666544 99999999999999999997544
No 469
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.46 E-value=0.00019 Score=70.78 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=25.8
Q ss_pred cceEEEecCC-ceeEEEcCCCCChhHHHHHHHHH
Q 001581 34 FDHLICKPGS-RLNLVIGPNGSGKSSLVCAIALA 66 (1050)
Q Consensus 34 ~~~~~i~f~~-~~~~I~G~NGsGKSti~~Ai~~~ 66 (1050)
+.+.++.+.+ .+.+|+|||||||||++.+|+..
T Consensus 17 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3355666654 48899999999999999988643
No 470
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00015 Score=74.57 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=25.7
Q ss_pred eEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.++.+.+| +.+|+|||||||||++.+|+..+
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 21 SINLPIPARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred cceEEecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455565554 99999999999999999997543
No 471
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.46 E-value=0.00017 Score=70.76 Aligned_cols=31 Identities=35% Similarity=0.388 Sum_probs=24.7
Q ss_pred EEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 37 LICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 37 ~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
.++++.+| +.+|+|||||||||++.+|+..+
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44555444 89999999999999999997544
No 472
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00017 Score=74.07 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=31.6
Q ss_pred CceEEEEEEe--cccccceEEEecCC-ceeEEEcCCCCChhHHHHHHHHHh
Q 001581 20 PGNIIEIELH--NFMTFDHLICKPGS-RLNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 20 ~~~i~~l~l~--nF~~~~~~~i~f~~-~~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
|..++.+... +..-+.+..+.+.+ .+.+|+|||||||||++.+|+...
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMN 53 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhh
Confidence 3445555543 11123345555554 489999999999999999997543
No 473
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.46 E-value=0.00019 Score=74.58 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=59.4
Q ss_pred cccccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCCCCCCCCCCCe
Q 001581 935 SAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEAC 1014 (1050)
Q Consensus 935 ~~~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~l~~l~~~~~~ 1014 (1050)
+++.|||||-+++|+|-.++ ..+-||+|||+...||-.-+-.+.+.+.+++. ..-+.++--|+|.-|+|..+
T Consensus 210 ~v~~LSGGELQr~aIaa~l~----rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~---~~k~ViVVEHDLavLD~lsD- 281 (591)
T COG1245 210 DVSELSGGELQRVAIAAALL----RDADVYFFDEPSSYLDIRQRLNAARVIRELAE---DGKYVIVVEHDLAVLDYLSD- 281 (591)
T ss_pred hhhhcCchHHHHHHHHHHHh----ccCCEEEEcCCcccccHHHHHHHHHHHHHHhc---cCCeEEEEechHHHHHHhhh-
Confidence 45669999999999887554 56889999999999999998888888888876 33444455555566776544
Q ss_pred EEEEEecCCC
Q 001581 1015 SILNIMNGPW 1024 (1050)
Q Consensus 1015 ~~~~~~~~~~ 1024 (1050)
.||.++--|.
T Consensus 282 ~vhI~YG~pg 291 (591)
T COG1245 282 FVHILYGEPG 291 (591)
T ss_pred eeEEEecCCc
Confidence 3343344443
No 474
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=0.00017 Score=75.02 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=27.5
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|+..+
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44566666655 99999999999999999998654
No 475
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.45 E-value=0.0002 Score=72.44 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=27.6
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|...+
T Consensus 16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33556666655 89999999999999999998766
No 476
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.00018 Score=72.29 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=26.3
Q ss_pred cceEEEecCC-ceeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGS-RLNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~-~~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.|.+ .+.+|+|||||||||++.+|+..+
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3355566654 488999999999999999997543
No 477
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.45 E-value=0.00014 Score=75.12 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=25.5
Q ss_pred eEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+..+.|.+| +.+|+|||||||||++..|...+
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455555544 99999999999999999987554
No 478
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.45 E-value=0.00019 Score=71.92 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=26.5
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 19 LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33555666544 89999999999999999997543
No 479
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.00015 Score=74.31 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=27.3
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.|.+| +.+|+|||||||||++.+|+..+
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44556666655 99999999999999999998544
No 480
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.45 E-value=0.00011 Score=73.98 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=26.6
Q ss_pred ceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 35 DHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 35 ~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
.+.++.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 19 DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3556666665 89999999999999999997543
No 481
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.45 E-value=0.00016 Score=73.77 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=26.6
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|.-.+
T Consensus 17 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33555666555 99999999999999999987543
No 482
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00015 Score=74.85 Aligned_cols=33 Identities=33% Similarity=0.464 Sum_probs=26.4
Q ss_pred ceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 35 DHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 35 ~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
.++++.+.+| +.+|+|||||||||++.+|.-.+
T Consensus 18 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 18 RDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3555566655 89999999999999999997554
No 483
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.44 E-value=0.037 Score=49.94 Aligned_cols=41 Identities=24% Similarity=0.435 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001581 624 SKKKKLEESVDELEESLKSMQTEQRLIEDEAAKLQKEREEI 664 (1050)
Q Consensus 624 ~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~ 664 (1050)
.+..........++.++..+.........++..+..+...+
T Consensus 7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~l 47 (143)
T PF12718_consen 7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQL 47 (143)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444343333333
No 484
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.44 E-value=0.00011 Score=72.89 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=26.4
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 16 l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44555666544 89999999999999999986543
No 485
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.00019 Score=73.96 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=31.9
Q ss_pred ceEEEEEEe--cccccceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 21 GNIIEIELH--NFMTFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 21 ~~i~~l~l~--nF~~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
..+..|... +..-+.+.++.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 8 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 8 IETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 445555443 222334555666555 99999999999999999997443
No 486
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.0002 Score=72.75 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=27.1
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 25 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44556666655 99999999999999999998544
No 487
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.44 E-value=0.00022 Score=83.86 Aligned_cols=60 Identities=22% Similarity=0.341 Sum_probs=52.6
Q ss_pred ccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 938 HQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 938 ~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
.||||||.+++||=.+. .+.|+++|||++++||+.++..+.+.|..... +.-+|+|||+.
T Consensus 476 ~LSgGq~Qrl~laRal~----~~~~ililDEpts~lD~~~~~~i~~~l~~~~~---~~t~IiitH~~ 535 (576)
T TIGR02204 476 TLSGGQRQRIAIARAIL----KDAPILLLDEATSALDAESEQLVQQALETLMK---GRTTLIIAHRL 535 (576)
T ss_pred cCCHHHHHHHHHHHHHH----hCCCeEEEeCcccccCHHHHHHHHHHHHHHhC---CCEEEEEecch
Confidence 39999999999987654 46789999999999999999999998887754 78999999995
No 488
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.43 E-value=0.00011 Score=73.96 Aligned_cols=32 Identities=31% Similarity=0.452 Sum_probs=26.0
Q ss_pred eEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.++.+.+| +.+|+|||||||||++.+|...+
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 18 NISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 555666665 88999999999999999987544
No 489
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.43 E-value=0.00023 Score=70.96 Aligned_cols=48 Identities=25% Similarity=0.210 Sum_probs=32.1
Q ss_pred CCceEEEEEEeccc---ccceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 19 MPGNIIEIELHNFM---TFDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 19 ~~~~i~~l~l~nF~---~~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
.+..+..+... |. -+.+.++.+.+| +.+|+|||||||||++.+|+..+
T Consensus 10 ~~l~~~~l~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 10 PLLAAHALAFS-RNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred ceEEEeeEEEe-cCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34455555542 21 233555565544 88999999999999999997543
No 490
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.00019 Score=73.37 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=24.7
Q ss_pred eEEEecCCc-eeEEEcCCCCChhHHHHHHHHH
Q 001581 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1050)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1050)
+..+.+.+| +.+|+|||||||||++.+|+-.
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 20 DITLDCPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455555544 8899999999999999998743
No 491
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.43 E-value=0.0002 Score=72.21 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=26.3
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.+.++.+.+| +.+|+|||||||||++.+|+-.+
T Consensus 21 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34555555544 89999999999999999997543
No 492
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.43 E-value=0.00019 Score=74.42 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=25.9
Q ss_pred eEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.++.+.+| +.+|+|||||||||++.+|...+
T Consensus 38 ~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 38 GIDMQFEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 556666654 99999999999999999996544
No 493
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.43 E-value=0.00017 Score=76.15 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=24.8
Q ss_pred eEEEecCCc-eeEEEcCCCCChhHHHHHHHH
Q 001581 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1050)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1050)
+.++.+.+| +.+|+|||||||||++..|+.
T Consensus 20 ~is~~i~~Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 20 EVSFEAQKGRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred EeEEEEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence 555666665 999999999999999998863
No 494
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.43 E-value=0.48 Score=56.21 Aligned_cols=104 Identities=18% Similarity=0.364 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhcCCc----ceEEEeecCCCcccccceEEEEEecCCCCcccccccccCchhHHHHHHHHHHHhcccC-
Q 001581 885 VAQINETFSRNFQEMAV----AGEVSLDEHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLVSLQDLT- 959 (1050)
Q Consensus 885 ~~~i~~~f~~~f~~l~~----~g~~~l~~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~lSGGErs~~~lall~al~~~~- 959 (1050)
...+...+..+|..+.. ...+.++ + .++.+.+ -.++|. .+++..|||||+..++|||++||+...
T Consensus 504 ~~~le~~~~~~f~~l~~k~~~~~~v~id--~---~~~~~~l--~~~~g~---~~~~~~lS~Ge~~~~~la~~~al~~~~~ 573 (650)
T TIGR03185 504 LQQLEEEITKSFKKLMRKHNLISRLKID--P---ETFAVSL--YDNNGK---HIDKERLSAGERQILAIALLWGLAKVSG 573 (650)
T ss_pred HHHHHHHHHHHHHHHhcccCceeEEEEc--C---CceeEEE--EcCCCC---CcCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44555566666666643 2445554 1 2345543 333343 456677999999999999999998654
Q ss_pred -CCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCC
Q 001581 960 -NCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPK 1003 (1050)
Q Consensus 960 -~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~ 1003 (1050)
+.|| |||++++.||+.++..++..+...+ ..|+||+||+
T Consensus 574 ~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~----~~QvIils~d 613 (650)
T TIGR03185 574 RRLPV-IIDTPLGRLDSSHRENLVVNYFPKA----SHQVLLLSTD 613 (650)
T ss_pred CCCCE-EEcCCccccChHHHHHHHHHHhhcc----CCeEEEEech
Confidence 5888 7799999999999999876443322 5799999988
No 495
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.43 E-value=0.00021 Score=71.13 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=26.0
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHHH
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIALA 66 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~ 66 (1050)
+.+.++.|.+| +.+|+|||||||||++..|.-.
T Consensus 16 l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33556666544 8999999999999999998643
No 496
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.43 E-value=0.068 Score=48.25 Aligned_cols=14 Identities=14% Similarity=0.461 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 001581 672 KRKRREMENHINLR 685 (1050)
Q Consensus 672 ~~~~~~l~~~l~~~ 685 (1050)
..+...+...+..+
T Consensus 41 ~~K~~~lE~eld~~ 54 (143)
T PF12718_consen 41 QKKNQQLEEELDKL 54 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 497
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00012 Score=69.17 Aligned_cols=21 Identities=48% Similarity=0.882 Sum_probs=18.5
Q ss_pred ceeEEEcCCCCChhHHHHHHH
Q 001581 44 RLNLVIGPNGSGKSSLVCAIA 64 (1050)
Q Consensus 44 ~~~~I~G~NGsGKSti~~Ai~ 64 (1050)
-+++|.|||||||||+.-+|.
T Consensus 31 EvhaiMGPNGsGKSTLa~~i~ 51 (251)
T COG0396 31 EVHAIMGPNGSGKSTLAYTIM 51 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 399999999999999987765
No 498
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00013 Score=72.80 Aligned_cols=32 Identities=34% Similarity=0.460 Sum_probs=25.3
Q ss_pred eEEEecCCc-eeEEEcCCCCChhHHHHHHHHHh
Q 001581 36 HLICKPGSR-LNLVIGPNGSGKSSLVCAIALAL 67 (1050)
Q Consensus 36 ~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~~L 67 (1050)
+.++.+.+| +.+|+|||||||||++..|.-.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445555554 89999999999999999997444
No 499
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.43 E-value=0.00017 Score=83.45 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=50.4
Q ss_pred cccCchhHHHHHHHHHHHhcccCCCCceEeeccccCCChHhHHHHHHHHHHHhcCCCCCeEEEEcCCC
Q 001581 937 HHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1004 (1050)
Q Consensus 937 ~~lSGGErs~~~lall~al~~~~~~Pf~vlDEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~ 1004 (1050)
..||||||.+++||..++ .+.++++|||++.|||+.+...+.+.|.+.. .+ +|+|||+.
T Consensus 444 ~~LSgG~~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~t-vi~vtHd~ 502 (556)
T PRK11819 444 GVLSGGERNRLHLAKTLK----QGGNVLLLDEPTNDLDVETLRALEEALLEFP----GC-AVVISHDR 502 (556)
T ss_pred hhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC----Ce-EEEEECCH
Confidence 459999999999998776 3688999999999999999999998887652 34 88999984
No 500
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.42 E-value=0.0002 Score=72.81 Aligned_cols=32 Identities=28% Similarity=0.517 Sum_probs=25.4
Q ss_pred cceEEEecCCc-eeEEEcCCCCChhHHHHHHHH
Q 001581 34 FDHLICKPGSR-LNLVIGPNGSGKSSLVCAIAL 65 (1050)
Q Consensus 34 ~~~~~i~f~~~-~~~I~G~NGsGKSti~~Ai~~ 65 (1050)
+.+.++.|.+| +.+|+|||||||||++.+|+.
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 17 LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 33555666544 889999999999999999873
Done!