Query 001581
Match_columns 1050
No_of_seqs 293 out of 2602
Neff 10.9
Searched_HMMs 29240
Date Tue Mar 26 17:32:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001581.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_877-881//hhsearch_pdb/001581hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ad8_A DNA repair protein RECN 1.0 1 1 209.0 39.7 138 20-175 37-175 (517)
2 3auy_A DNA double-strand break 1.0 1 1 200.2 25.1 150 19-175 1-157 (371)
3 1w1w_A Structural maintenance 1.0 1 1 197.3 18.8 155 20-177 1-176 (430)
4 3kta_A Chromosome segregation 1.0 1 1 196.3 20.2 165 20-185 1-178 (182)
5 3qks_A DNA double-strand break 1.0 1 1 196.2 21.0 163 21-189 1-176 (203)
6 1e69_A Chromosome segregation 1.0 1 1 179.1 16.4 150 21-173 1-157 (322)
7 1f2t_A RAD50 ABC-ATPase; DNA d 1.0 1 1 170.3 14.0 136 21-161 1-149 (149)
8 3qkt_A DNA double-strand break 1.0 1 1 169.1 17.9 157 21-182 1-169 (339)
9 3qf7_A RAD50; ABC-ATPase, ATPa 1.0 1 1 159.3 17.8 153 21-176 1-166 (365)
10 3kta_B Chromosome segregation 1.0 1 1 154.8 14.1 134 875-1015 3-137 (173)
No 1
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=1.00 E-value=1 Score=209.02 Aligned_cols=138 Identities=23% Similarity=0.301 Sum_probs=114.5
Q ss_pred CCEEEEEEEECCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEE-E
Q ss_conf 701889997324210007883499625998599998469999999880699754443353011110398524999999-8
Q 001581 20 PGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISL-R 98 (1050)
Q Consensus 20 ~m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~-~ 98 (1050)
.|+|.+|+|.||++|..++++|++|+|+|+|+||||||||++||.|++||++ ..++|++|+..++|++.| .
T Consensus 37 ~M~l~~L~i~nf~~~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~~llg~r~--------~~~~i~~g~~~a~v~~~f~~ 108 (517)
T 4ad8_A 37 GPRLSRLEIRNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLGGRA--------NHDLIRSGEKELLVTGFWGD 108 (517)
T ss_dssp -CCCCEEEEESBTTBSCEEEECCCSEEEEEESHHHHHHHHTHHHHHHTCSCC--------CGGGBCTTCSEEEEEEEC--
T ss_pred CCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCC--------HHHHHCCCCCCEEEEEEEEE
T ss_conf 6664236001616630179953898079985999878999999998736776--------89982189973899999985
Q ss_pred ECCCCCEEEEEEEEECCCCEEEEECCEECCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 07998418999999649960178878232988899999882865444212113211688860796889999998619
Q 001581 99 GDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKAVG 175 (1050)
Q Consensus 99 ~~~~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~g 175 (1050)
++ ++..+.|.|.+..+|.+.|++||.+++..++.++...+ ..+.+|... +...+|..++.+++...+
T Consensus 109 ~~-~~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~~~l-------i~i~~q~~~--~~l~~~~~rr~~LD~~~~ 175 (517)
T 4ad8_A 109 GD-ESEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGR-------LTIHWQHSA--VSLLSPANQRGLLDRRVT 175 (517)
T ss_dssp -------CEEEEEEETTSCCEEESSSSBCCHHHHHHHHTTT-------EEEESGGGG--GTTTSHHHHHHHHHTSSH
T ss_pred CC-CCCEEEEEEEEECCCCCEEEECCEECCHHHHHHHHHHH-------EEEECCCHH--HHCCCHHHHHHHHHHHHC
T ss_conf 48-99769999999638883899999988799999996310-------688688517--761798999999998747
No 2
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=1.00 E-value=1 Score=200.17 Aligned_cols=150 Identities=25% Similarity=0.393 Sum_probs=125.8
Q ss_pred CCCEEEEEEEECCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEE
Q ss_conf 77018899973242100078834996259985999984699999998806997544433530111103985249999998
Q 001581 19 MPGNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLR 98 (1050)
Q Consensus 19 ~~m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~ 98 (1050)
|||+|.+|+|.||++|.+++|+|++|+|+|+||||||||||++||+|+|+|.. |+....++|++|+..+.|+++|.
T Consensus 1 m~M~l~~L~l~nFr~~~~~~i~f~~gl~vi~G~NGaGKT~ileAI~~~l~g~~----r~~~~~~~ir~g~~~~~V~~~f~ 76 (371)
T 3auy_A 1 MSMILKEIRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALFGAG----SNFNYDTIITKGKKSVYVELDFE 76 (371)
T ss_dssp CCEEEEEEEEEEETTEEEEEEECCSEEEEEEECTTSSHHHHHHHHHHHHHCCC-----CCCTTTTBCTTCSEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCC----CCCCHHHHCCCCCCCEEEEEEEE
T ss_conf 98478699998611536659836998499999999988999999999982998----75556765118998389999999
Q ss_pred ECCCCCEEEEEEEEECCCC--EEEEECCEECCH--HHHHHHHH-HCCCCCCCC--CCCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf 0799841899999964996--017887823298--88999998-828654442--1211321168886079688999999
Q 001581 99 GDTKEEHLTIMRKIDTRNK--SEWFFNGKVVPK--GEVLEITK-RFNIQVNNL--TQFLPQDRVCEFAKLSPVKLLEETE 171 (1050)
Q Consensus 99 ~~~~~~~~~i~R~~~~~~~--~~~~~~~~~~~~--~~~~~~l~-~~~~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~ 171 (1050)
. ++..|.|.|.+ .+|. ..+++||..+.. .++...+. .+|++.+.+ +.+++||++..|+..+|.+++.+++
T Consensus 77 ~--~~~~~~i~r~~-~~g~~~~~~~~ng~~~~~~~~~~~~~l~~i~gl~~~~f~~~v~~~qg~~~~~~~~~~~~Rr~~ld 153 (371)
T 3auy_A 77 V--NGNNYKIIREY-DSGRGGAKLYKNGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLKPSEKLETVA 153 (371)
T ss_dssp E--TTEEEEEEEEE-ETTEEEEEEEETTEEEECSHHHHHHHHHHHHCSCHHHHHHHHEECTTHHHHHHHSCHHHHHHHHH
T ss_pred E--CCEEEEEEEEE-CCCCCCEEEEECCEEECCCHHHHHHHHHHHHCCCHHHHCCEEEECCCCHHHHHHCCHHHHHHHHH
T ss_conf 8--99999999997-68998539998998611647899999999869598994743266173079987359899999999
Q ss_pred HHHC
Q ss_conf 8619
Q 001581 172 KAVG 175 (1050)
Q Consensus 172 ~~~g 175 (1050)
..+|
T Consensus 154 ~~~~ 157 (371)
T 3auy_A 154 KLLG 157 (371)
T ss_dssp HHHT
T ss_pred HHHC
T ss_conf 9869
No 3
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=1.00 E-value=1 Score=197.28 Aligned_cols=155 Identities=28% Similarity=0.408 Sum_probs=134.6
Q ss_pred CCEEEEEEEECCCCCCEE-EEECC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCC---------
Q ss_conf 701889997324210007-88349-9625998599998469999999880699754443353011110398---------
Q 001581 20 PGNIIEIELHNFMTFDHL-ICKPG-SRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGE--------- 88 (1050)
Q Consensus 20 ~m~i~~l~l~nf~~~~~~-~i~f~-~~~~~I~G~NGsGKStil~Ai~~~L~g~~~~~~r~~~~~~~i~~g~--------- 88 (1050)
||+|++|++.||++|... .++|. +++|+|+||||||||||++||+|++++.+. ..|+....++|++|.
T Consensus 1 mm~i~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~-~~R~~~~~~lI~~g~~~~~~~~~~ 79 (430)
T 1w1w_A 1 MGRLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN-HLRSNILKDLIYRGVLNDENSDDY 79 (430)
T ss_dssp -CCEEEEEEESCSSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC----------CGGGSCCC----------
T ss_pred CCEEEEEEEECEEEECCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 9715899995889989940577569978999999988899999999845342434-401445899996488664025872
Q ss_pred ----------CEEEEEEEEEECCCCCEEEEEEEEECCCCEEEEECCEECCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf ----------5249999998079984189999996499601788782329888999998828654442121132116888
Q 001581 89 ----------ESGYIKISLRGDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEF 158 (1050)
Q Consensus 89 ----------~~a~v~i~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~ 158 (1050)
..++|.+.|.. ++..+.|.|.+.+++.+.|++||.+++..++..++...++.+.++.++++||++..|
T Consensus 80 ~~~~~~~~~~~~~~v~~~~~~--~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~~i~~~~~~~~i~qg~~~~l 157 (430)
T 1w1w_A 80 DNEGAASSNPQSAYVKAFYQK--GNKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQI 157 (430)
T ss_dssp ---------CCEEEEEEEEEE--TTEEEEEEEEEETTSCEEEEETTEEECHHHHHHHHHHTTCCTTTCTTEECTTCTTHH
T ss_pred CCCCCCCCCCCCCCCEEEECC--CCCEEEEEEEEECCCCEEEEECCEECCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHH
T ss_conf 266665677631111034216--882799999996699569999998864999999998579587872004665759999
Q ss_pred HCCCHHHHHHHHHHHHCCC
Q ss_conf 6079688999999861999
Q 001581 159 AKLSPVKLLEETEKAVGDP 177 (1050)
Q Consensus 159 ~~~~~~~~~~~~~~~~g~~ 177 (1050)
+.++|.+++.+++.++|..
T Consensus 158 ~~~~p~eRr~~ld~~~g~~ 176 (430)
T 1w1w_A 158 AAQSPVELSRMFEEVSGSI 176 (430)
T ss_dssp HHSCHHHHHHTC-------
T ss_pred HHCCHHHHHHHHHHHHCCH
T ss_conf 8589999999999983964
No 4
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=1.00 E-value=1 Score=196.25 Aligned_cols=165 Identities=22% Similarity=0.380 Sum_probs=147.4
Q ss_pred CCEEEEEEEECCCCC--CEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCC------CEE
Q ss_conf 701889997324210--007883499625998599998469999999880699754443353011110398------524
Q 001581 20 PGNIIEIELHNFMTF--DHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGE------ESG 91 (1050)
Q Consensus 20 ~m~i~~l~l~nf~~~--~~~~i~f~~~~~~I~G~NGsGKStil~Ai~~~L~g~~~~~~r~~~~~~~i~~g~------~~a 91 (1050)
||+|.+|+|.||++| .+.+++|++|+|+|+||||||||||++||.|+|++.+....|+....++++.|. ..+
T Consensus 1 mM~i~~l~i~nf~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (182)
T 3kta_A 1 MPYIEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYA 80 (182)
T ss_dssp -CEEEEEEEESBGGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCE
T ss_pred CCEEEEEEEECEEEECCCCEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHEEECCCCCCCCCCEE
T ss_conf 95689999958486537628996589828999999997899999999997687422345432000366466667777359
Q ss_pred EEEEEEEECC-----CCCEEEEEEEEECCCCEEEEECCEECCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Q ss_conf 9999998079-----98418999999649960178878232988899999882865444212113211688860796889
Q 001581 92 YIKISLRGDT-----KEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKL 166 (1050)
Q Consensus 92 ~v~i~~~~~~-----~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 166 (1050)
.|.++|.+.. .+..++|.|.+..++.+.|.+||..++..++.+++..+++..+++ .+++||++..|+.++|.++
T Consensus 81 ~v~~~f~~~~~~~~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~-~~~~qg~~~~l~~~~~~~r 159 (182)
T 3kta_A 81 EVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGY-NIVLQGDITKFIKMSPLER 159 (182)
T ss_dssp EEEEEEECTTCCSSSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCT-TEECTTCTTHHHHSCHHHH
T ss_pred EEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCEECCHHHHHHHHHHCCCCCCCC-EEEECCCHHHHHHCCHHHH
T ss_conf 999999578765456786899999999589579999995868999999999859997887-7997521889982799999
Q ss_pred HHHHHHHHCCCCHHHHHHH
Q ss_conf 9999986199990589999
Q 001581 167 LEETEKAVGDPQLPVQHCA 185 (1050)
Q Consensus 167 ~~~~~~~~g~~~l~~~~~~ 185 (1050)
+.+++.++|...|...+++
T Consensus 160 ~~~ld~~~g~~~~~~~~~~ 178 (182)
T 3kta_A 160 RLLIDDISGIAEYDSKKEK 178 (182)
T ss_dssp HHHHHHHHTC---------
T ss_pred HHHHHHHHCHHHHHHHHHH
T ss_conf 9999998785889999998
No 5
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=1.00 E-value=1 Score=196.22 Aligned_cols=163 Identities=18% Similarity=0.238 Sum_probs=133.8
Q ss_pred CEEEEEEEECCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 01889997324210007883499625998599998469999999880699754443353011110398524999999807
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1050)
Q Consensus 21 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1050)
|+|.+|+|.||++|...+|+|++++|+|+||||||||||++||.|+|||.+. .|+....++++.|...+.|+++|.+
T Consensus 1 M~i~~l~i~nf~~~~~~~i~f~~~~~~I~G~NgsGKStil~ai~~~l~g~~~--~r~~~~~~~i~~~~~~~~v~l~f~~- 77 (203)
T 3qks_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEK- 77 (203)
T ss_dssp CEEEEEEEESBTTBSSEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHTTSC--CTTCCHHHHHTSCSSCEEEEEEEEE-
T ss_pred CEEEEEEEECCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCCHHHHCCCCCCEEEEEEEEE-
T ss_conf 9799999988767156299818981899928999889999999999649855--6566612333068984899999998-
Q ss_pred CCCCEEEEEEEEECCC---CE---EEEECCEE--C---CHHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHCCCHHHHH
Q ss_conf 9984189999996499---60---17887823--2---9888999998828654442--121132116888607968899
Q 001581 101 TKEEHLTIMRKIDTRN---KS---EWFFNGKV--V---PKGEVLEITKRFNIQVNNL--TQFLPQDRVCEFAKLSPVKLL 167 (1050)
Q Consensus 101 ~~~~~~~i~R~~~~~~---~~---~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~--~~~~~q~~~~~~~~~~~~~~~ 167 (1050)
++..|+|.|.+.+++ .+ .|..+|.. . ..+++...+..+ ++.+.+ +++++||++..|+.++ .++.
T Consensus 78 -~~~~~~i~R~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~i~~l-l~~~~f~~~~~l~Qg~~~~~l~~~-~er~ 154 (203)
T 3qks_A 78 -DGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKL-IPYNIFLNAIYIRQGQIDAILESD-EARE 154 (203)
T ss_dssp -TTEEEEEEEEEECSSSCEEEEEEEEEETTEEEESSCSSHHHHHHHHHHH-SCHHHHHHTTEECTTHHHHHHHCH-HHHH
T ss_pred -CCEEEEEEEEEECCCCCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHH-CCHHHHHEEEEECCCCHHHHHHCC-HHHH
T ss_conf -9999999999976898776535999728966550347768999999997-398781278899587578787493-9999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999861999905899999998
Q 001581 168 EETEKAVGDPQLPVQHCALVEK 189 (1050)
Q Consensus 168 ~~~~~~~g~~~l~~~~~~l~~~ 189 (1050)
..+..++|+..|....+.+.+.
T Consensus 155 ~~l~~i~g~~~~~~~~~~l~~~ 176 (203)
T 3qks_A 155 KVVREVLNLDKFETAYKKLSEL 176 (203)
T ss_dssp HHHHHHTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHH
T ss_conf 9999997978999999999999
No 6
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=1.00 E-value=1 Score=179.14 Aligned_cols=150 Identities=22% Similarity=0.371 Sum_probs=131.1
Q ss_pred CEEEEEEEECCCCCC-EEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCC------CEEEE
Q ss_conf 018899973242100-07883499625998599998469999999880699754443353011110398------52499
Q 001581 21 GNIIEIELHNFMTFD-HLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGE------ESGYI 93 (1050)
Q Consensus 21 m~i~~l~l~nf~~~~-~~~i~f~~~~~~I~G~NGsGKStil~Ai~~~L~g~~~~~~r~~~~~~~i~~g~------~~a~v 93 (1050)
|+|++|+|.||++|. .++++|++|+|+|+||||||||||++||.|+||+......|+....++|+.|. ..+.|
T Consensus 1 M~l~~L~i~nfr~~~~~~~l~~~~g~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v 80 (322)
T 1e69_A 1 MRLKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYV 80 (322)
T ss_dssp CEEEEEEEESBTTBCSCEEEECCSSEEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEE
T ss_pred CEEEEEEEECCEEECCCEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHCCCCCHHHHHCCCCCCCCCCCEEEE
T ss_conf 95759999493521697688569992899999999679999999998688840000202588760267667888861899
Q ss_pred EEEEEECCCCCEEEEEEEEECCCCEEEEECCEECCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99998079984189999996499601788782329888999998828654442121132116888607968899999986
Q 001581 94 KISLRGDTKEEHLTIMRKIDTRNKSEWFFNGKVVPKGEVLEITKRFNIQVNNLTQFLPQDRVCEFAKLSPVKLLEETEKA 173 (1050)
Q Consensus 94 ~i~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~ 173 (1050)
++.|.+ .+..+.|.|.+...+.+.|++||.+++..++...+...++..+.+ .++.||.+.+++..+|.+++.+++..
T Consensus 81 ~~~f~~--~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~-~lv~qg~i~~~~~~~p~~rr~~ld~~ 157 (322)
T 1e69_A 81 ELVFEE--NGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFY-SIVGQGQIDRIVNASPEELRLESSKH 157 (322)
T ss_dssp EEEEES--SSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCC-SEEEHHHHHHHHTC------------
T ss_pred EEEEEE--CCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHE-EEEEHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 999993--992999999998699638999990834999999999839980460-66745649999866688899999986
No 7
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=1.00 E-value=1 Score=170.31 Aligned_cols=136 Identities=23% Similarity=0.346 Sum_probs=110.8
Q ss_pred CEEEEEEEECCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 01889997324210007883499625998599998469999999880699754443353011110398524999999807
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1050)
Q Consensus 21 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1050)
|+|.+|+|.||++|.+.+++|++++|+|+||||||||||++||+|+|+|.... |+....++++.|...+.|+++|.+
T Consensus 1 M~i~~l~i~nf~~~~~~~i~f~~g~~~I~G~NGsGKStil~Ai~~~l~g~~~~--r~~~~~~~~~~~~~~~~v~~~f~~- 77 (149)
T 1f2t_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRI--KDIKKDEFTKVGARDTYIDLIFEK- 77 (149)
T ss_dssp CEEEEEEEESBTTBSSEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHCSSCC--TTSSCCCSCSTTCCCEEEEEEEEE-
T ss_pred CEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC--CCCCHHHHEECCCCCEEEEEEEEE-
T ss_conf 97879999685348665997289769999889998899999999997598544--558878850069974899999998-
Q ss_pred CCCCEEEEEEEEECCC-CEEEE--EC--C---EEC--CH-HHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHCC
Q ss_conf 9984189999996499-60178--87--8---232--98-889999988286544421--21132116888607
Q 001581 101 TKEEHLTIMRKIDTRN-KSEWF--FN--G---KVV--PK-GEVLEITKRFNIQVNNLT--QFLPQDRVCEFAKL 161 (1050)
Q Consensus 101 ~~~~~~~i~R~~~~~~-~~~~~--~~--~---~~~--~~-~~~~~~l~~~~~~~~~~~--~~~~q~~~~~~~~~ 161 (1050)
++..|+|.|.+.+++ .+.|+ ++ | ..+ .. +++.+.+..+ ++.+.|. .+++||++.+|+.+
T Consensus 78 -~~~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l-l~~~~f~~~~~i~QG~~~~~l~~ 149 (149)
T 1f2t_A 78 -DGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKL-IPYNIFLNAIYIRQGQIDAILES 149 (149)
T ss_dssp -TTEEEEEEEEECCC----EEEEEEEEETTEEEESSCSSHHHHHHHHHHH-SCHHHHHHHTEECTTHHHHHTCC
T ss_pred -CCEEEEEEEEECCCCCCEEEEEEECCCCCCEEECCCCCHHHHHHHHHHH-CCHHHHHHEEEECCCCHHHHHHC
T ss_conf -9999999999867888438999752689733783447668999999997-69988531689807579879539
No 8
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=1.00 E-value=1 Score=169.13 Aligned_cols=157 Identities=16% Similarity=0.198 Sum_probs=117.7
Q ss_pred CEEEEEEEECCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 01889997324210007883499625998599998469999999880699754443353011110398524999999807
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1050)
Q Consensus 21 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1050)
|+|++|+|.||++|.+++++|++|+|+|+||||||||||++||+|+|++... .++....++++.|...++|.++|.+
T Consensus 1 M~i~~l~l~nF~~~~~~~i~f~~~~~~i~G~NGsGKS~lleAi~~~l~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~- 77 (339)
T 3qkt_A 1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLR--IKDIKKDEFTKVGARDTYIDLIFEK- 77 (339)
T ss_dssp CEEEEEEEEEETTEEEEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHCSCC--CTTCCHHHHBCTTCSEEEEEEEEEE-
T ss_pred CEEEEEEEECCCCCCCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC--CCCCCHHHHHCCCCCEEEEEEEEEE-
T ss_conf 9679999976217557177279983899999999789999999999648756--6767777886178980899999998-
Q ss_pred CCCCEEEEEEEEECCC---CEEEE---ECCEE-----CCHHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Q ss_conf 9984189999996499---60178---87823-----29888999998-8286544421211321168886079688999
Q 001581 101 TKEEHLTIMRKIDTRN---KSEWF---FNGKV-----VPKGEVLEITK-RFNIQVNNLTQFLPQDRVCEFAKLSPVKLLE 168 (1050)
Q Consensus 101 ~~~~~~~i~R~~~~~~---~~~~~---~~~~~-----~~~~~~~~~l~-~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 168 (1050)
++..|.|.|++.++. ...+. .++.. ....++...+. ..+........+++||.+..|+. +|.++..
T Consensus 78 -~~~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l~~~~~f~~~~~i~Qg~~~~il~-~~~eR~~ 155 (339)
T 3qkt_A 78 -DGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILE-SDEAREK 155 (339)
T ss_dssp -TTEEEEEEEEEETTCTTSCEEEEEEEETTEEEESSCSSHHHHHHHHHHHSCHHHHHHHTEECTTCTTGGGS-CTTHHHH
T ss_pred -CCEEEEEEEEEECCCCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHHHCCHHHHHHHEEECCHHHHHHHH-CHHHHHH
T ss_conf -99999999998547778864378994288255423331678999999863978765425861212999872-8699999
Q ss_pred HHHHHHCCCCHHHH
Q ss_conf 99986199990589
Q 001581 169 ETEKAVGDPQLPVQ 182 (1050)
Q Consensus 169 ~~~~~~g~~~l~~~ 182 (1050)
++..++|...|...
T Consensus 156 ll~~l~~~~~~~~~ 169 (339)
T 3qkt_A 156 VVREVLNLDKFETA 169 (339)
T ss_dssp HHHHHHTTCTTHHH
T ss_pred HHHHHHCCHHHHHH
T ss_conf 99999682168999
No 9
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=1.00 E-value=1 Score=159.27 Aligned_cols=153 Identities=22% Similarity=0.266 Sum_probs=115.3
Q ss_pred CEEEEEEEECCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEC
Q ss_conf 01889997324210007883499625998599998469999999880699754443353011110398524999999807
Q 001581 21 GNIIEIELHNFMTFDHLICKPGSRLNLVIGPNGSGKSSLVCAIALALGGDTQLLGRATSIGAYVKRGEESGYIKISLRGD 100 (1050)
Q Consensus 21 m~i~~l~l~nf~~~~~~~i~f~~~~~~I~G~NGsGKStil~Ai~~~L~g~~~~~~r~~~~~~~i~~g~~~a~v~i~~~~~ 100 (1050)
|++.+|++.||++|.+.+++|++|+++|+||||||||||++||+|+|+|....... ......++.+...+.|+++|.
T Consensus 1 M~~~~l~~~~f~~~~~~~i~~~~g~~~i~G~NGaGKTTll~ai~~al~g~~~r~~~-~~~~~~~~~~~~~~~v~~~f~-- 77 (365)
T 3qf7_A 1 MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPN-SYDYVNRNAVDGTARLVFQFE-- 77 (365)
T ss_dssp CEEEEEEEEEETTEEEEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHSCCSSCSS-GGGGBCTTCTTCEEEEEEEEE--
T ss_pred CEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-CCHHHHCCCCCCCEEEEEEEE--
T ss_conf 95489999676686661783489869999999997899999999996688655567-504554147887389999999--
Q ss_pred CCCCEEEEEEEEECC-CC---EEEEE--CCE----ECCHHHHHHHHH-HCCCCCCCC--CCCCCCHHHHHHHCCCHHHHH
Q ss_conf 998418999999649-96---01788--782----329888999998-828654442--121132116888607968899
Q 001581 101 TKEEHLTIMRKIDTR-NK---SEWFF--NGK----VVPKGEVLEITK-RFNIQVNNL--TQFLPQDRVCEFAKLSPVKLL 167 (1050)
Q Consensus 101 ~~~~~~~i~R~~~~~-~~---~~~~~--~~~----~~~~~~~~~~l~-~~~~~~~~~--~~~~~q~~~~~~~~~~~~~~~ 167 (1050)
.+|..|.|.|.+.+. +. ..+.+ +|. .....++...+. .+|+..+.+ +.+++||.+..|+.++|.++.
T Consensus 78 ~~g~~y~v~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~i~~~lgl~~~~f~~~v~l~Qg~~~~~l~~~~~~r~ 157 (365)
T 3qf7_A 78 RGGKRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVKQEVEKILGIEHRTFIRTVFLPQGEIDKLLISPPSEIT 157 (365)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEECTTSCEEEEEESHHHHHHHHHHHHTSCHHHHHHHTEECTTCTTTTTTSCHHHHH
T ss_pred ECCEEEEEEEEEECCCCCCCCEEEEECCCCCEEECCCCHHHHHHHHHHHHCCCHHHHCEEEEECCCCHHHHHHCCHHHHH
T ss_conf 89989999999852678876079998379936651367688999999997999999456899733224989853926689
Q ss_pred HHHHHHHCC
Q ss_conf 999986199
Q 001581 168 EETEKAVGD 176 (1050)
Q Consensus 168 ~~~~~~~g~ 176 (1050)
..+..+++.
T Consensus 158 ~~l~~lf~~ 166 (365)
T 3qf7_A 158 EIISDVFQS 166 (365)
T ss_dssp HHHHHHTSC
T ss_pred HHHHHHHHH
T ss_conf 999999835
No 10
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=1.00 E-value=1 Score=154.81 Aligned_cols=134 Identities=19% Similarity=0.318 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9537999999999999999988307766589961-278843455349999736898752004544686147999999999
Q 001581 875 EKWLPTLRNLVAQINETFSRNFQEMAVAGEVSLD-EHESDFDKFGILIKVKFRQSGQLEVLSAHHQSGGERSVSTILYLV 953 (1050)
Q Consensus 875 ~~~~~~~~~~~~~i~~~f~~~f~~l~~~g~~~l~-~~~~~~~~~~l~i~v~~~~~~~~~~~~~~~lSGGEks~~~lal~l 953 (1050)
.+....|...|..|+..|..+|..++++|.+.+. .+|.++..+|+.+.+.|+ +...+ .+..||||||..+++|+.|
T Consensus 3 ~~~~~~f~~~f~~i~~~f~~~f~~L~~~g~~~l~l~~~~~~~~~gl~i~~~~~-~~~~~--~~~~LSgGekqr~ala~~l 79 (173)
T 3kta_B 3 KEKKNVFMRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPA-GKDVK--RIEAMSGGEKALTALAFVF 79 (173)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCSSSGGGSCEEEEEETT-SSSCC--CGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCC-CCCCC--CCCCCCHHHHHHHHHHHHH
T ss_conf 79999999999999999999999858998799996079874336856996389-84416--3300999999999999999
Q ss_pred HHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEE
Q ss_conf 86246789846753434688927699999999998469999819997479988987798808
Q 001581 954 SLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACS 1015 (1050)
Q Consensus 954 al~~~~~~Pf~~~DEid~~lD~~n~~~~~~~l~~~~~~~~~~Q~i~iTp~~~~~~~~~~~~~ 1015 (1050)
|++.+.|+||++|||++++||+.++..+.++|.+... ..|+|+|||+.. -+.+.+.+-
T Consensus 80 a~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~---~~~~ivith~~~-~~~~ad~i~ 137 (173)
T 3kta_B 80 AIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK---ESQFIVITLRDV-MMANADKII 137 (173)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT---TSEEEEECSCHH-HHTTCSEEE
T ss_pred HHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC---CCEEEEEEECHH-HHHHCCEEE
T ss_conf 8545579989997798657899999999999998666---998999993689-998699999
Done!