Query 001582
Match_columns 1049
No_of_seqs 338 out of 610
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:23:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2956 CLIP-associating prote 100.0 5.3E-43 1.2E-47 388.1 35.9 506 439-1046 2-516 (516)
2 KOG1820 Microtubule-associated 99.8 6.6E-19 1.4E-23 215.3 32.2 531 421-1038 253-793 (815)
3 PF12348 CLASP_N: CLASP N term 99.8 2E-19 4.4E-24 194.3 17.7 199 832-1030 20-228 (228)
4 PF12348 CLASP_N: CLASP N term 99.8 1.6E-18 3.5E-23 187.3 17.9 193 431-623 16-211 (228)
5 KOG1820 Microtubule-associated 99.8 6.1E-17 1.3E-21 198.2 26.3 214 819-1035 256-471 (815)
6 KOG1242 Protein containing ada 99.4 6.9E-12 1.5E-16 146.4 17.9 185 833-1020 148-337 (569)
7 KOG2171 Karyopherin (importin) 99.3 4.9E-09 1.1E-13 129.6 36.0 413 465-1020 117-562 (1075)
8 KOG1242 Protein containing ada 99.2 2.4E-08 5.2E-13 117.2 33.9 176 833-1013 268-449 (569)
9 KOG2171 Karyopherin (importin) 99.2 9.8E-08 2.1E-12 118.4 40.3 393 421-1018 5-428 (1075)
10 KOG1824 TATA-binding protein-i 99.1 5.9E-07 1.3E-11 108.5 36.1 432 431-1026 14-526 (1233)
11 KOG2933 Uncharacterized conser 98.9 9.7E-09 2.1E-13 111.4 12.3 199 411-618 79-277 (334)
12 KOG2023 Nuclear transport rece 98.8 7.9E-07 1.7E-11 104.1 26.1 400 430-1033 223-724 (885)
13 KOG2023 Nuclear transport rece 98.8 1.7E-06 3.7E-11 101.4 24.8 418 502-1030 169-613 (885)
14 KOG2933 Uncharacterized conser 98.7 1.6E-07 3.4E-12 102.1 14.4 192 816-1011 88-280 (334)
15 KOG1824 TATA-binding protein-i 98.7 1.1E-05 2.4E-10 97.8 30.3 147 466-618 127-286 (1233)
16 KOG0212 Uncharacterized conser 98.7 1.2E-05 2.5E-10 93.3 29.2 176 430-618 8-196 (675)
17 PRK13800 putative oxidoreducta 98.7 3.5E-06 7.7E-11 108.7 26.8 118 469-616 624-741 (897)
18 PTZ00429 beta-adaptin; Provisi 98.6 0.0003 6.5E-09 88.0 41.0 474 422-1013 34-512 (746)
19 KOG0915 Uncharacterized conser 98.6 4E-05 8.6E-10 97.3 30.9 385 432-991 967-1368(1702)
20 KOG2956 CLIP-associating prote 98.5 7.1E-06 1.5E-10 93.6 20.3 225 397-636 265-495 (516)
21 KOG0213 Splicing factor 3b, su 98.5 0.0005 1.1E-08 81.9 34.8 169 858-1027 796-975 (1172)
22 KOG1241 Karyopherin (importin) 98.4 0.0017 3.6E-08 78.3 36.4 443 432-1020 227-723 (859)
23 KOG0212 Uncharacterized conser 98.4 0.00025 5.3E-09 82.7 28.7 390 430-949 51-462 (675)
24 PF01602 Adaptin_N: Adaptin N 98.3 0.00015 3.2E-09 88.3 27.3 386 430-1004 122-520 (526)
25 PF01602 Adaptin_N: Adaptin N 98.2 0.00074 1.6E-08 82.1 31.2 166 833-1012 318-487 (526)
26 PLN03200 cellulose synthase-in 98.2 0.00092 2E-08 90.1 33.2 390 422-1008 448-860 (2102)
27 COG5181 HSH155 U2 snRNP splice 98.2 0.0004 8.7E-09 81.3 25.5 177 833-1017 660-838 (975)
28 KOG1241 Karyopherin (importin) 98.1 0.011 2.5E-07 71.5 34.2 211 818-1033 321-555 (859)
29 KOG0213 Splicing factor 3b, su 98.0 0.0095 2.1E-07 71.5 32.5 346 461-1024 794-1158(1172)
30 KOG1248 Uncharacterized conser 98.0 0.00043 9.3E-09 86.9 22.3 196 833-1031 668-919 (1176)
31 PF12755 Vac14_Fab1_bd: Vacuol 97.9 0.00014 3E-09 68.1 12.3 92 835-927 2-93 (97)
32 PF05004 IFRD: Interferon-rela 97.9 0.0024 5.2E-08 72.5 24.3 192 818-1012 45-261 (309)
33 PF12460 MMS19_C: RNAPII trans 97.9 0.00074 1.6E-08 80.0 21.0 199 818-1023 191-409 (415)
34 PTZ00429 beta-adaptin; Provisi 97.9 0.18 3.8E-06 63.8 43.4 172 818-1005 366-543 (746)
35 KOG1060 Vesicle coat complex A 97.9 0.085 1.8E-06 64.4 36.7 163 430-618 43-209 (968)
36 PRK09687 putative lyase; Provi 97.8 0.00049 1.1E-08 77.0 15.9 150 833-1005 68-218 (280)
37 PRK13800 putative oxidoreducta 97.8 0.0049 1.1E-07 80.0 26.8 150 421-618 622-771 (897)
38 COG5181 HSH155 U2 snRNP splice 97.7 0.041 9E-07 65.1 30.2 152 871-1030 810-972 (975)
39 PLN03200 cellulose synthase-in 97.7 0.096 2.1E-06 71.5 37.8 186 818-1008 448-638 (2102)
40 PF12755 Vac14_Fab1_bd: Vacuol 97.7 0.00049 1.1E-08 64.4 12.1 89 877-1001 2-90 (97)
41 KOG0915 Uncharacterized conser 97.7 0.00049 1.1E-08 87.9 15.6 161 835-996 1013-1189(1702)
42 KOG0211 Protein phosphatase 2A 97.7 0.074 1.6E-06 66.6 34.2 178 430-622 167-349 (759)
43 PF10274 ParcG: Parkin co-regu 97.7 0.00026 5.7E-09 73.2 10.7 101 931-1035 32-135 (183)
44 PF10508 Proteasom_PSMB: Prote 97.5 0.33 7.1E-06 59.2 35.7 162 443-617 59-230 (503)
45 PRK09687 putative lyase; Provi 97.4 0.002 4.4E-08 72.1 14.2 159 818-1006 25-186 (280)
46 PF12717 Cnd1: non-SMC mitotic 97.2 0.025 5.3E-07 59.1 18.2 164 833-1004 2-175 (178)
47 KOG2032 Uncharacterized conser 97.2 0.0094 2E-07 69.2 15.9 182 432-617 227-415 (533)
48 KOG0211 Protein phosphatase 2A 97.1 0.46 9.9E-06 59.8 30.7 170 833-1010 493-666 (759)
49 KOG0166 Karyopherin (importin) 97.1 0.012 2.7E-07 69.7 16.3 187 818-1007 196-392 (514)
50 KOG2160 Armadillo/beta-catenin 97.1 0.043 9.4E-07 62.0 19.5 177 831-1011 95-285 (342)
51 PF10508 Proteasom_PSMB: Prote 96.9 0.064 1.4E-06 65.3 20.6 181 834-1020 53-241 (503)
52 KOG1967 DNA repair/transcripti 96.9 0.0073 1.6E-07 74.4 12.1 152 818-1007 869-1023(1030)
53 PF05004 IFRD: Interferon-rela 96.8 0.058 1.3E-06 61.3 18.8 191 422-620 45-259 (309)
54 cd00020 ARM Armadillo/beta-cat 96.8 0.009 1.9E-07 56.8 9.9 104 903-1007 8-119 (120)
55 cd03567 VHS_GGA VHS domain fam 96.7 0.03 6.4E-07 56.0 13.6 111 430-551 13-131 (139)
56 PF13513 HEAT_EZ: HEAT-like re 96.7 0.0037 7.9E-08 51.9 5.9 55 951-1006 1-55 (55)
57 KOG1240 Protein kinase contain 96.7 0.35 7.5E-06 61.8 25.1 94 437-535 438-536 (1431)
58 cd00020 ARM Armadillo/beta-cat 96.6 0.011 2.5E-07 56.0 9.7 104 862-965 8-119 (120)
59 PF02985 HEAT: HEAT repeat; I 96.6 0.0025 5.5E-08 46.5 3.9 30 980-1009 1-30 (31)
60 PF13251 DUF4042: Domain of un 96.6 0.017 3.8E-07 60.2 11.2 134 877-1010 2-176 (182)
61 PF00790 VHS: VHS domain; Int 96.6 0.036 7.9E-07 55.5 13.0 107 430-547 17-129 (140)
62 PF12231 Rif1_N: Rap1-interact 96.6 0.26 5.7E-06 57.6 22.0 202 833-1038 7-239 (372)
63 KOG1243 Protein kinase [Genera 96.5 0.032 7E-07 67.6 14.2 139 882-1023 272-418 (690)
64 COG5240 SEC21 Vesicle coat com 96.4 0.055 1.2E-06 63.7 14.8 182 836-1029 354-579 (898)
65 KOG1062 Vesicle coat complex A 96.4 0.1 2.3E-06 63.9 17.6 194 833-1036 156-412 (866)
66 cd03568 VHS_STAM VHS domain fa 96.4 0.071 1.5E-06 53.7 13.9 105 430-545 12-119 (144)
67 KOG2025 Chromosome condensatio 96.3 0.14 3E-06 62.0 17.5 184 833-1034 99-291 (892)
68 COG5215 KAP95 Karyopherin (imp 96.2 4.3 9.3E-05 48.6 34.2 141 843-1020 580-723 (858)
69 KOG0392 SNF2 family DNA-depend 96.2 0.059 1.3E-06 68.6 14.1 176 834-1012 748-929 (1549)
70 KOG1059 Vesicle coat complex A 96.1 0.15 3.4E-06 61.7 16.4 180 816-1011 144-365 (877)
71 KOG1240 Protein kinase contain 96.0 0.11 2.4E-06 66.0 15.6 191 833-1036 437-641 (1431)
72 PF13646 HEAT_2: HEAT repeats; 96.0 0.034 7.4E-07 50.3 8.6 85 904-1003 1-87 (88)
73 PF12717 Cnd1: non-SMC mitotic 96.0 0.29 6.3E-06 51.1 16.7 113 874-990 1-116 (178)
74 COG5218 YCG1 Chromosome conden 95.9 0.28 6E-06 58.2 17.3 181 860-1040 90-299 (885)
75 cd03565 VHS_Tom1 VHS domain fa 95.9 0.043 9.2E-07 55.1 9.5 106 430-546 13-125 (141)
76 cd03569 VHS_Hrs_Vps27p VHS dom 95.9 0.13 2.8E-06 51.7 13.0 104 431-545 17-123 (142)
77 KOG2032 Uncharacterized conser 95.9 0.26 5.6E-06 57.7 16.8 214 818-1034 215-443 (533)
78 smart00288 VHS Domain present 95.8 0.19 4.1E-06 50.0 13.6 106 430-546 12-121 (133)
79 KOG1078 Vesicle coat complex C 95.8 6.2 0.00013 49.1 28.2 166 431-620 109-276 (865)
80 PF04118 Dopey_N: Dopey, N-ter 95.8 0.084 1.8E-06 59.7 12.2 193 421-619 54-255 (307)
81 cd03561 VHS VHS domain family; 95.8 0.092 2E-06 52.2 11.1 100 431-541 13-117 (133)
82 PF04118 Dopey_N: Dopey, N-ter 95.6 0.3 6.5E-06 55.4 15.7 179 818-1035 12-198 (307)
83 PF13513 HEAT_EZ: HEAT-like re 95.6 0.027 5.8E-07 46.6 5.4 53 876-928 2-54 (55)
84 KOG0166 Karyopherin (importin) 95.4 0.31 6.7E-06 58.2 15.6 171 833-1004 80-262 (514)
85 KOG1061 Vesicle coat complex A 95.4 5.5 0.00012 49.5 26.0 173 421-615 87-265 (734)
86 KOG2149 Uncharacterized conser 95.2 0.19 4E-06 57.8 12.4 117 818-938 60-177 (393)
87 KOG4524 Uncharacterized conser 95.2 14 0.0003 47.2 31.7 161 862-1022 804-988 (1014)
88 KOG1062 Vesicle coat complex A 95.1 5.3 0.00011 49.7 24.5 97 512-618 108-208 (866)
89 PF10363 DUF2435: Protein of u 95.1 0.13 2.8E-06 47.7 8.8 71 945-1017 11-81 (92)
90 KOG2259 Uncharacterized conser 95.1 0.72 1.6E-05 55.7 16.9 209 819-1036 237-524 (823)
91 KOG1248 Uncharacterized conser 95.0 3 6.5E-05 53.9 22.9 180 432-617 664-855 (1176)
92 PF10274 ParcG: Parkin co-regu 95.0 0.33 7.2E-06 50.6 12.4 109 835-944 54-179 (183)
93 KOG2274 Predicted importin 9 [ 95.0 2.3 4.9E-05 53.4 21.2 146 873-1020 585-750 (1005)
94 KOG1943 Beta-tubulin folding c 94.9 0.46 1E-05 60.3 15.4 125 898-1024 337-474 (1133)
95 KOG4653 Uncharacterized conser 94.9 0.7 1.5E-05 57.4 16.4 187 819-1020 730-930 (982)
96 PF08167 RIX1: rRNA processing 94.8 0.58 1.3E-05 48.3 13.9 139 857-1026 21-161 (165)
97 PF12460 MMS19_C: RNAPII trans 94.8 0.78 1.7E-05 54.5 16.9 151 833-987 244-414 (415)
98 COG5096 Vesicle coat complex, 94.8 0.28 6E-06 61.2 13.3 126 870-1009 28-157 (757)
99 PF13646 HEAT_2: HEAT repeats; 94.8 0.094 2E-06 47.3 7.1 84 864-961 2-87 (88)
100 COG5215 KAP95 Karyopherin (imp 94.8 13 0.00028 44.8 33.9 201 817-1022 322-543 (858)
101 cd00197 VHS_ENTH_ANTH VHS, ENT 94.7 0.3 6.6E-06 47.0 10.8 97 432-535 10-114 (115)
102 PF12231 Rif1_N: Rap1-interact 94.6 5.5 0.00012 46.7 23.0 189 818-1011 92-306 (372)
103 KOG2259 Uncharacterized conser 94.6 15 0.00034 44.9 26.8 125 833-969 387-514 (823)
104 cd03572 ENTH_epsin_related ENT 94.5 0.34 7.3E-06 47.3 10.4 75 857-931 34-119 (122)
105 PF12719 Cnd3: Nuclear condens 94.4 0.32 7E-06 55.0 11.7 128 880-1007 2-142 (298)
106 PF10363 DUF2435: Protein of u 94.3 0.38 8.1E-06 44.7 9.9 86 818-915 5-90 (92)
107 PF13251 DUF4042: Domain of un 94.2 0.65 1.4E-05 48.6 12.5 132 835-966 2-174 (182)
108 PF14500 MMS19_N: Dos2-interac 94.1 5.2 0.00011 44.6 20.0 133 431-568 8-149 (262)
109 KOG2137 Protein kinase [Signal 94.1 3 6.4E-05 51.5 19.2 106 897-1006 384-494 (700)
110 KOG1837 Uncharacterized conser 94.0 1.1 2.4E-05 59.0 16.4 183 834-1018 1409-1621(1621)
111 PF10521 DUF2454: Protein of u 94.0 1.7 3.6E-05 49.0 16.3 141 851-992 109-278 (282)
112 PF04388 Hamartin: Hamartin pr 93.7 0.92 2E-05 57.0 14.8 148 865-1034 8-159 (668)
113 PF12783 Sec7_N: Guanine nucle 93.6 0.55 1.2E-05 48.5 10.7 107 434-541 34-148 (168)
114 KOG0392 SNF2 family DNA-depend 93.5 0.98 2.1E-05 58.2 14.2 154 854-1010 72-239 (1549)
115 COG5096 Vesicle coat complex, 93.4 6.4 0.00014 49.6 20.9 160 833-1009 33-196 (757)
116 TIGR02270 conserved hypothetic 93.4 0.74 1.6E-05 54.4 12.5 118 863-1006 88-205 (410)
117 PF04826 Arm_2: Armadillo-like 93.3 2.2 4.7E-05 47.3 15.4 188 818-1013 14-210 (254)
118 KOG0803 Predicted E3 ubiquitin 93.3 3.3 7.1E-05 55.1 19.2 190 818-1011 43-266 (1312)
119 PF08167 RIX1: rRNA processing 93.3 1.4 3.1E-05 45.4 13.0 112 818-934 27-146 (165)
120 KOG1087 Cytosolic sorting prot 93.1 0.3 6.6E-06 58.1 8.8 100 430-540 13-116 (470)
121 PF14500 MMS19_N: Dos2-interac 93.0 5.6 0.00012 44.3 18.0 184 833-1021 54-251 (262)
122 KOG1020 Sister chromatid cohes 92.9 1.8 4E-05 56.9 15.6 148 856-1009 811-961 (1692)
123 KOG1077 Vesicle coat complex A 92.5 6.3 0.00014 48.4 18.3 88 937-1028 329-423 (938)
124 KOG1060 Vesicle coat complex A 92.3 3.6 7.8E-05 51.0 16.1 181 819-1025 38-233 (968)
125 KOG2149 Uncharacterized conser 92.1 6.9 0.00015 45.4 17.4 127 863-990 60-193 (393)
126 PLN03076 ARF guanine nucleotid 92.1 4 8.7E-05 56.3 18.2 100 436-535 374-481 (1780)
127 TIGR02270 conserved hypothetic 92.0 2.4 5.1E-05 50.3 14.2 119 863-1007 56-175 (410)
128 PF02985 HEAT: HEAT repeat; I 92.0 0.31 6.7E-06 35.5 4.4 31 903-933 1-31 (31)
129 KOG0168 Putative ubiquitin fus 91.8 4.4 9.6E-05 50.6 16.3 186 818-1010 169-366 (1051)
130 KOG1058 Vesicle coat complex C 91.7 1.4 3E-05 54.1 11.7 34 977-1010 132-165 (948)
131 cd03561 VHS VHS domain family; 91.4 2.5 5.5E-05 41.9 11.8 93 839-936 20-117 (133)
132 cd03568 VHS_STAM VHS domain fa 91.3 1.7 3.7E-05 43.8 10.5 76 860-935 36-114 (144)
133 COG5218 YCG1 Chromosome conden 91.0 5 0.00011 48.2 15.1 152 840-1001 31-192 (885)
134 cd00197 VHS_ENTH_ANTH VHS, ENT 91.0 3 6.4E-05 40.2 11.5 89 837-930 18-114 (115)
135 KOG1058 Vesicle coat complex C 90.8 53 0.0011 41.2 30.1 55 554-619 110-164 (948)
136 PF12830 Nipped-B_C: Sister ch 90.8 2 4.3E-05 45.3 10.9 68 902-969 8-77 (187)
137 KOG1525 Sister chromatid cohes 90.6 1.3 2.8E-05 58.6 11.1 143 818-967 261-406 (1266)
138 COG1413 FOG: HEAT repeat [Ener 90.4 6.4 0.00014 45.1 15.6 31 979-1009 180-210 (335)
139 KOG4224 Armadillo repeat prote 90.4 1.6 3.5E-05 49.5 9.9 145 863-1008 210-363 (550)
140 PF05918 API5: Apoptosis inhib 90.2 4.3 9.2E-05 49.5 14.2 148 833-990 36-189 (556)
141 cd03565 VHS_Tom1 VHS domain fa 90.1 2 4.3E-05 43.2 9.6 76 860-935 37-119 (141)
142 KOG2274 Predicted importin 9 [ 89.9 7.1 0.00015 49.3 15.7 174 833-1012 505-693 (1005)
143 COG1413 FOG: HEAT repeat [Ener 89.9 6.2 0.00014 45.1 15.0 152 818-1006 76-240 (335)
144 KOG1020 Sister chromatid cohes 89.2 4 8.8E-05 53.9 13.5 113 895-1012 809-925 (1692)
145 PF10521 DUF2454: Protein of u 89.2 4.9 0.00011 45.2 13.1 128 894-1021 111-266 (282)
146 PF00790 VHS: VHS domain; Int 89.1 7.4 0.00016 38.9 12.9 94 838-936 24-123 (140)
147 PF08064 UME: UME (NUC010) dom 89.1 2.4 5.2E-05 40.5 8.9 69 950-1021 28-97 (107)
148 cd03567 VHS_GGA VHS domain fam 89.0 3.3 7.2E-05 41.5 10.2 75 860-934 37-119 (139)
149 COG5095 TAF6 Transcription ini 88.9 4.1 9E-05 45.1 11.5 123 833-965 212-358 (450)
150 PF08623 TIP120: TATA-binding 88.9 1.7 3.8E-05 44.8 8.3 112 898-1011 5-150 (169)
151 cd03572 ENTH_epsin_related ENT 88.9 2.8 6.1E-05 41.0 9.3 98 431-535 10-118 (122)
152 PF04826 Arm_2: Armadillo-like 88.8 15 0.00033 40.7 16.2 170 430-608 62-252 (254)
153 COG5064 SRP1 Karyopherin (impo 88.4 2 4.3E-05 48.4 8.7 173 844-1018 226-410 (526)
154 PF12830 Nipped-B_C: Sister ch 88.3 16 0.00034 38.5 15.4 72 422-502 10-81 (187)
155 KOG2137 Protein kinase [Signal 87.8 4.8 0.0001 49.7 12.3 126 860-987 388-520 (700)
156 PF05536 Neurochondrin: Neuroc 87.7 20 0.00042 44.3 17.8 190 816-1010 5-215 (543)
157 PLN03076 ARF guanine nucleotid 87.7 21 0.00045 49.7 19.4 154 857-1011 1265-1492(1780)
158 PF11698 V-ATPase_H_C: V-ATPas 87.5 2.6 5.6E-05 41.0 8.0 70 937-1008 43-115 (119)
159 KOG2549 Transcription initiati 87.5 17 0.00036 43.9 16.0 123 833-965 221-369 (576)
160 PF03378 CAS_CSE1: CAS/CSE pro 87.3 5 0.00011 48.0 12.1 62 938-1001 203-266 (435)
161 KOG1991 Nuclear transport rece 87.2 21 0.00045 45.8 17.4 156 873-1034 430-596 (1010)
162 PF14664 RICTOR_N: Rapamycin-i 87.0 22 0.00048 41.7 16.9 133 869-1011 34-176 (371)
163 PF03378 CAS_CSE1: CAS/CSE pro 86.8 53 0.0011 39.4 20.2 198 834-1040 44-255 (435)
164 PF08389 Xpo1: Exportin 1-like 86.8 12 0.00025 37.0 12.8 136 840-1003 9-148 (148)
165 KOG1059 Vesicle coat complex A 86.7 10 0.00022 46.9 13.9 178 421-618 144-328 (877)
166 KOG2025 Chromosome condensatio 86.7 9.8 0.00021 46.9 13.8 127 873-1004 54-189 (892)
167 cd03569 VHS_Hrs_Vps27p VHS dom 86.5 6.2 0.00013 39.7 10.5 76 860-935 40-118 (142)
168 KOG1077 Vesicle coat complex A 86.3 99 0.0021 38.6 27.9 118 422-554 76-199 (938)
169 KOG4224 Armadillo repeat prote 86.1 2.3 5E-05 48.2 7.8 170 834-1007 100-279 (550)
170 KOG1967 DNA repair/transcripti 86.0 2.6 5.7E-05 53.0 8.8 100 833-933 923-1026(1030)
171 PF08161 NUC173: NUC173 domain 85.9 21 0.00045 38.1 14.6 78 869-946 8-85 (198)
172 PF11640 TAN: Telomere-length 85.7 16 0.00035 37.2 13.3 95 818-915 6-120 (155)
173 PF05918 API5: Apoptosis inhib 85.7 34 0.00073 42.0 17.9 121 874-1003 35-157 (556)
174 KOG1525 Sister chromatid cohes 85.6 32 0.0007 46.1 18.9 64 945-1009 267-330 (1266)
175 KOG4653 Uncharacterized conser 85.4 14 0.00031 46.5 14.5 145 863-1011 729-879 (982)
176 PF08569 Mo25: Mo25-like; Int 85.2 26 0.00056 40.5 16.0 179 818-1003 78-278 (335)
177 KOG2062 26S proteasome regulat 85.1 4.1 8.9E-05 50.2 9.7 150 866-1029 524-674 (929)
178 cd08050 TAF6 TATA Binding Prot 85.0 8.4 0.00018 44.6 12.2 94 833-936 192-302 (343)
179 PF12074 DUF3554: Domain of un 85.0 23 0.00049 40.9 15.8 173 835-1012 39-239 (339)
180 PF08064 UME: UME (NUC010) dom 84.8 13 0.00028 35.5 11.3 84 855-942 5-94 (107)
181 PF14664 RICTOR_N: Rapamycin-i 84.7 32 0.00069 40.4 16.7 167 833-1008 82-269 (371)
182 PF12719 Cnd3: Nuclear condens 84.5 45 0.00098 37.7 17.6 102 860-965 25-142 (298)
183 KOG1243 Protein kinase [Genera 84.3 3.4 7.3E-05 50.8 8.6 183 818-1012 332-519 (690)
184 smart00288 VHS Domain present 84.2 8 0.00017 38.4 10.0 75 860-934 36-114 (133)
185 KOG4535 HEAT and armadillo rep 84.2 44 0.00096 39.7 16.9 146 864-1011 109-327 (728)
186 KOG4535 HEAT and armadillo rep 83.1 5.7 0.00012 46.7 9.3 103 866-968 52-181 (728)
187 KOG1943 Beta-tubulin folding c 82.5 27 0.00058 45.2 15.5 148 861-1011 341-503 (1133)
188 KOG1949 Uncharacterized conser 82.3 19 0.00041 44.5 13.4 142 470-618 178-331 (1005)
189 KOG0946 ER-Golgi vesicle-tethe 82.2 27 0.00058 43.8 14.9 168 818-1008 24-195 (970)
190 PF08506 Cse1: Cse1; InterPro 81.8 11 0.00025 44.0 11.6 125 875-1003 225-370 (370)
191 PF11640 TAN: Telomere-length 81.7 18 0.00039 36.9 11.7 50 420-473 4-55 (155)
192 PF12765 Cohesin_HEAT: HEAT re 81.6 1.6 3.5E-05 34.3 3.1 26 978-1003 17-42 (42)
193 KOG2160 Armadillo/beta-catenin 81.3 69 0.0015 36.9 17.0 165 820-989 128-309 (342)
194 PF08767 CRM1_C: CRM1 C termin 81.0 58 0.0013 37.4 16.8 135 878-1012 44-198 (319)
195 PF08767 CRM1_C: CRM1 C termin 80.7 28 0.0006 40.0 14.0 155 836-990 44-225 (319)
196 PF13001 Ecm29: Proteasome sta 80.4 14 0.0003 45.1 12.2 145 421-572 319-488 (501)
197 smart00802 UME Domain in UVSB 80.4 22 0.00049 34.0 11.0 83 854-940 4-92 (107)
198 KOG0946 ER-Golgi vesicle-tethe 80.1 71 0.0015 40.3 17.4 137 833-969 77-244 (970)
199 PF08713 DNA_alkylation: DNA a 80.1 9.5 0.00021 40.5 9.5 89 923-1020 108-196 (213)
200 KOG0414 Chromosome condensatio 79.8 41 0.00088 44.1 15.9 121 910-1037 320-453 (1251)
201 KOG1949 Uncharacterized conser 79.4 23 0.0005 43.8 12.8 143 865-1010 178-333 (1005)
202 KOG3961 Uncharacterized conser 79.3 5.7 0.00012 42.2 7.0 67 954-1021 131-200 (262)
203 smart00638 LPD_N Lipoprotein N 79.0 33 0.00072 42.5 15.1 168 818-1006 359-543 (574)
204 PF08569 Mo25: Mo25-like; Int 78.3 31 0.00067 39.9 13.4 100 833-932 178-284 (335)
205 PF03224 V-ATPase_H_N: V-ATPas 77.8 49 0.0011 37.7 15.0 148 818-969 107-272 (312)
206 cd00256 VATPase_H VATPase_H, r 77.7 35 0.00075 40.7 13.8 70 937-1008 353-425 (429)
207 KOG1517 Guanine nucleotide bin 77.4 38 0.00082 43.8 14.3 158 833-1012 571-734 (1387)
208 PF11865 DUF3385: Domain of un 77.3 14 0.00029 38.1 9.2 146 858-1009 7-158 (160)
209 PF08623 TIP120: TATA-binding 76.8 13 0.00029 38.4 8.9 83 48-135 38-120 (169)
210 KOG0168 Putative ubiquitin fus 76.7 2.3E+02 0.005 36.4 30.4 185 421-615 168-361 (1051)
211 COG5240 SEC21 Vesicle coat com 76.7 15 0.00032 44.3 10.1 147 446-614 361-512 (898)
212 KOG4524 Uncharacterized conser 76.2 70 0.0015 41.2 16.2 67 945-1012 811-880 (1014)
213 KOG2038 CAATT-binding transcri 76.0 30 0.00066 43.2 12.7 122 862-987 305-430 (988)
214 smart00802 UME Domain in UVSB 75.7 14 0.00031 35.3 8.2 67 951-1020 29-96 (107)
215 PF08568 Kinetochor_Ybp2: Unch 75.4 53 0.0012 41.4 15.6 73 876-948 39-112 (633)
216 KOG0929 Guanine nucleotide exc 75.4 14 0.0003 49.7 10.5 131 853-1012 1166-1302(1514)
217 COG5116 RPN2 26S proteasome re 75.3 22 0.00048 42.8 11.0 111 903-1021 552-663 (926)
218 PF01603 B56: Protein phosphat 75.1 1.1E+02 0.0024 36.5 17.3 182 818-1004 135-322 (409)
219 PF03224 V-ATPase_H_N: V-ATPas 74.9 65 0.0014 36.7 14.9 105 860-965 57-178 (312)
220 PF10441 Urb2: Urb2/Npa2 famil 74.9 1.3E+02 0.0028 32.5 19.0 180 839-1034 8-213 (223)
221 KOG0803 Predicted E3 ubiquitin 74.5 46 0.00099 44.9 14.9 138 420-573 41-178 (1312)
222 PF05536 Neurochondrin: Neuroc 73.9 1.6E+02 0.0035 36.4 18.8 156 857-1014 94-267 (543)
223 KOG2199 Signal transducing ada 73.5 18 0.00039 41.8 9.4 84 465-548 44-130 (462)
224 PF12783 Sec7_N: Guanine nucle 73.3 32 0.00069 35.4 10.8 98 834-931 37-146 (168)
225 PF04388 Hamartin: Hamartin pr 72.9 36 0.00078 43.1 13.1 127 419-551 3-161 (668)
226 PF11864 DUF3384: Domain of un 72.9 1.1E+02 0.0023 37.2 16.7 163 839-1007 154-329 (464)
227 KOG0414 Chromosome condensatio 72.7 67 0.0015 42.2 15.1 140 857-1005 915-1061(1251)
228 PF05804 KAP: Kinesin-associat 72.2 1.2E+02 0.0025 38.7 17.2 150 857-1008 486-649 (708)
229 KOG2199 Signal transducing ada 71.6 22 0.00047 41.1 9.5 96 833-937 26-124 (462)
230 PF11701 UNC45-central: Myosin 71.5 48 0.001 33.9 11.5 130 873-1005 17-156 (157)
231 PF01347 Vitellogenin_N: Lipop 70.9 18 0.00038 45.3 9.9 134 861-1006 431-587 (618)
232 COG5064 SRP1 Karyopherin (impo 70.6 35 0.00075 38.9 10.7 183 818-1003 73-267 (526)
233 PF11841 DUF3361: Domain of un 70.5 67 0.0014 33.1 11.9 118 818-936 13-136 (160)
234 PF11698 V-ATPase_H_C: V-ATPas 69.9 29 0.00064 33.8 8.9 69 861-931 43-115 (119)
235 KOG1087 Cytosolic sorting prot 69.8 21 0.00046 42.8 9.6 75 861-935 38-116 (470)
236 PF09324 DUF1981: Domain of un 69.8 25 0.00054 32.2 8.1 68 861-928 17-85 (86)
237 KOG1061 Vesicle coat complex A 69.6 61 0.0013 40.7 13.5 169 833-1012 100-272 (734)
238 KOG4413 26S proteasome regulat 69.5 32 0.00069 39.0 10.0 104 914-1018 55-166 (524)
239 PF01603 B56: Protein phosphat 68.9 14 0.00031 43.9 7.9 96 439-536 272-370 (409)
240 PF12333 Ipi1_N: Rix1 complex 68.7 23 0.00051 33.5 7.9 43 499-541 3-45 (102)
241 COG5656 SXM1 Importin, protein 67.6 1.8E+02 0.0039 36.8 16.5 164 858-1024 405-584 (970)
242 PF08506 Cse1: Cse1; InterPro 67.3 2.6E+02 0.0056 32.9 17.8 36 877-912 112-147 (370)
243 PF13001 Ecm29: Proteasome sta 66.3 70 0.0015 39.2 13.4 93 893-985 14-112 (501)
244 KOG2549 Transcription initiati 66.3 1.5E+02 0.0032 36.2 15.2 179 424-620 211-417 (576)
245 KOG2062 26S proteasome regulat 65.7 18 0.00039 45.0 7.8 142 833-991 533-677 (929)
246 KOG2081 Nuclear transport regu 65.1 1.3E+02 0.0029 36.7 14.6 149 858-1011 288-460 (559)
247 PF00514 Arm: Armadillo/beta-c 65.0 12 0.00026 28.8 4.3 29 979-1007 12-40 (41)
248 cd08050 TAF6 TATA Binding Prot 64.0 86 0.0019 36.4 12.9 110 421-541 182-302 (343)
249 PF01417 ENTH: ENTH domain; I 63.2 52 0.0011 32.1 9.4 94 433-535 14-120 (125)
250 PF08161 NUC173: NUC173 domain 63.0 34 0.00074 36.5 8.7 90 481-574 15-105 (198)
251 KOG1293 Proteins containing ar 62.9 3.4E+02 0.0073 33.9 17.6 135 871-1007 387-532 (678)
252 COG5116 RPN2 26S proteasome re 62.5 19 0.00041 43.4 7.0 119 863-990 553-673 (926)
253 KOG2022 Nuclear transport rece 62.1 3.3E+02 0.0073 35.2 17.7 114 873-989 521-642 (982)
254 PF12243 CTK3: CTD kinase subu 62.0 1.3E+02 0.0029 30.2 12.0 107 506-617 7-118 (139)
255 KOG1991 Nuclear transport rece 61.5 4.8E+02 0.01 34.2 19.1 160 850-1011 631-803 (1010)
256 KOG2759 Vacuolar H+-ATPase V1 61.2 1E+02 0.0023 36.3 12.5 69 937-1007 366-437 (442)
257 PF11864 DUF3384: Domain of un 60.5 2.9E+02 0.0063 33.5 17.1 131 878-1011 151-288 (464)
258 PF14225 MOR2-PAG1_C: Cell mor 60.4 2.4E+02 0.0052 31.5 15.0 138 818-969 113-257 (262)
259 PF11841 DUF3361: Domain of un 59.8 1.8E+02 0.0038 30.1 12.6 33 981-1013 104-136 (160)
260 COG5098 Chromosome condensatio 59.3 2E+02 0.0043 36.1 14.6 103 833-937 313-420 (1128)
261 KOG2842 Interferon-related pro 59.3 2.1E+02 0.0045 33.5 14.2 195 833-1028 74-297 (427)
262 PF01417 ENTH: ENTH domain; I 59.1 43 0.00093 32.7 8.0 74 857-930 35-120 (125)
263 KOG2973 Uncharacterized conser 58.7 1.7E+02 0.0037 33.3 13.1 170 430-613 11-198 (353)
264 KOG2081 Nuclear transport regu 58.5 3.7E+02 0.0079 33.0 16.7 155 818-983 389-553 (559)
265 PF14228 MOR2-PAG1_mid: Cell m 58.4 2.5E+02 0.0054 37.8 16.8 71 862-933 504-574 (1120)
266 KOG4413 26S proteasome regulat 57.9 2.8E+02 0.006 31.8 14.5 70 862-931 83-157 (524)
267 PF10193 Telomere_reg-2: Telom 57.1 93 0.002 30.1 9.8 94 864-961 6-110 (114)
268 PF02854 MIF4G: MIF4G domain; 57.0 2.4E+02 0.0052 29.1 18.1 147 857-1015 14-163 (209)
269 PF11707 Npa1: Ribosome 60S bi 56.8 1.7E+02 0.0037 33.7 13.7 89 918-1011 42-146 (330)
270 KOG2753 Uncharacterized conser 55.4 3.6E+02 0.0078 31.0 15.0 124 903-1033 108-248 (378)
271 KOG2973 Uncharacterized conser 55.0 81 0.0017 35.8 9.9 55 862-916 4-58 (353)
272 COG5098 Chromosome condensatio 54.3 1.5E+02 0.0032 37.1 12.5 109 466-616 299-413 (1128)
273 cd06561 AlkD_like A new struct 52.8 2.9E+02 0.0062 28.7 16.4 76 940-1021 108-183 (197)
274 KOG0413 Uncharacterized conser 52.6 2.1E+02 0.0047 37.1 13.8 180 421-613 472-680 (1529)
275 PF11865 DUF3385: Domain of un 52.2 55 0.0012 33.6 7.8 64 863-926 88-152 (160)
276 KOG1822 Uncharacterized conser 52.0 6.8E+02 0.015 35.4 19.0 200 839-1039 1804-2042(2067)
277 PF11707 Npa1: Ribosome 60S bi 51.9 4.3E+02 0.0092 30.4 18.4 152 863-1014 58-243 (330)
278 PF14726 RTTN_N: Rotatin, an a 50.9 1.6E+02 0.0035 27.8 9.9 90 834-927 2-96 (98)
279 cd03562 CID CID (CTD-Interacti 50.7 1.5E+02 0.0033 28.1 10.3 91 837-932 18-109 (114)
280 PF12333 Ipi1_N: Rix1 complex 50.6 52 0.0011 31.1 6.8 64 970-1039 2-65 (102)
281 PF12612 TFCD_C: Tubulin foldi 50.1 56 0.0012 34.5 7.7 131 433-569 18-155 (193)
282 PF05804 KAP: Kinesin-associat 50.1 1.8E+02 0.004 37.0 13.3 132 858-992 247-385 (708)
283 KOG1993 Nuclear transport rece 49.9 6.8E+02 0.015 32.2 17.5 125 820-947 530-662 (978)
284 KOG1851 Uncharacterized conser 49.9 1.1E+02 0.0025 41.4 11.5 107 432-542 1537-1644(1710)
285 PF12530 DUF3730: Protein of u 48.3 4E+02 0.0086 29.1 19.3 108 882-993 105-217 (234)
286 PF12530 DUF3730: Protein of u 47.9 4E+02 0.0087 29.0 15.2 32 976-1007 118-150 (234)
287 KOG4825 Component of synaptic 47.4 1.8E+02 0.0038 34.5 11.3 99 833-931 407-516 (666)
288 KOG1822 Uncharacterized conser 46.9 4.6E+02 0.01 36.9 16.4 171 833-1007 930-1126(2067)
289 PF06371 Drf_GBD: Diaphanous G 46.6 1.8E+02 0.0039 29.9 10.9 55 952-1007 131-186 (187)
290 PF14676 FANCI_S2: FANCI solen 45.6 3.6E+02 0.0077 27.7 13.5 116 880-1004 37-157 (158)
291 PF11919 DUF3437: Domain of un 45.4 24 0.00052 32.7 3.5 78 953-1032 5-82 (90)
292 cd03562 CID CID (CTD-Interacti 45.3 1.1E+02 0.0024 29.2 8.3 74 465-540 36-112 (114)
293 PF07778 CENP-I: Mis6 ; Inter 45.2 1.5E+02 0.0034 36.2 11.2 101 536-650 129-240 (511)
294 smart00582 RPR domain present 45.2 1.4E+02 0.0031 28.6 9.2 95 838-937 14-115 (121)
295 KOG0413 Uncharacterized conser 44.8 2.8E+02 0.0061 36.1 13.2 142 861-1008 472-645 (1529)
296 PF11838 ERAP1_C: ERAP1-like C 44.6 5E+02 0.011 29.1 18.0 78 436-520 35-121 (324)
297 cd00256 VATPase_H VATPase_H, r 44.6 6.3E+02 0.014 30.3 18.4 135 833-967 115-259 (429)
298 PF12074 DUF3554: Domain of un 44.3 2E+02 0.0043 33.1 11.8 83 912-994 33-122 (339)
299 KOG1848 Uncharacterized conser 44.3 2.1E+02 0.0045 38.7 12.4 138 874-1011 855-1029(1610)
300 PF12612 TFCD_C: Tubulin foldi 43.8 2.7E+02 0.0058 29.3 11.7 106 898-1009 3-117 (193)
301 cd03571 ENTH_epsin ENTH domain 43.5 1.8E+02 0.0039 28.6 9.5 74 857-930 33-117 (123)
302 KOG2011 Sister chromatid cohes 43.3 2.8E+02 0.0061 36.7 13.5 133 833-968 301-438 (1048)
303 PF10350 DUF2428: Putative dea 43.2 1.4E+02 0.003 33.1 9.8 97 818-914 144-252 (255)
304 PF03542 Tuberin: Tuberin; In 43.0 2.4E+02 0.0052 33.0 11.9 134 432-573 152-303 (356)
305 PF12765 Cohesin_HEAT: HEAT re 42.9 37 0.00079 26.7 3.7 25 507-531 18-42 (42)
306 KOG0891 DNA-dependent protein 42.7 3.3E+02 0.0071 39.5 14.9 202 818-1030 482-699 (2341)
307 COG1017 Hmp Hemoglobin-like fl 42.0 2.1E+02 0.0045 28.9 9.4 113 7-121 7-143 (150)
308 COG5101 CRM1 Importin beta-rel 41.6 2.3E+02 0.005 35.1 11.5 173 833-1012 848-1034(1053)
309 PF14225 MOR2-PAG1_C: Cell mor 40.7 5.3E+02 0.012 28.8 13.8 81 849-932 51-145 (262)
310 smart00582 RPR domain present 40.7 65 0.0014 31.0 6.0 76 465-542 31-115 (121)
311 KOG2021 Nuclear mRNA export fa 40.3 3.7E+02 0.008 34.2 13.1 187 839-1027 510-745 (980)
312 KOG1848 Uncharacterized conser 40.1 8.6E+02 0.019 33.4 16.9 106 902-1007 997-1131(1610)
313 PF14726 RTTN_N: Rotatin, an a 39.8 2.2E+02 0.0048 26.9 9.0 57 438-495 3-59 (98)
314 KOG4500 Rho/Rac GTPase guanine 39.6 6.4E+02 0.014 30.2 14.2 88 862-950 316-415 (604)
315 PF06685 DUF1186: Protein of u 39.4 4.3E+02 0.0093 29.3 12.6 81 932-1020 68-157 (249)
316 KOG2011 Sister chromatid cohes 39.2 2.4E+02 0.0051 37.4 11.9 116 909-1024 294-418 (1048)
317 KOG3961 Uncharacterized conser 39.2 1.5E+02 0.0032 32.0 8.4 108 835-944 130-254 (262)
318 PF04858 TH1: TH1 protein; In 39.2 2.3E+02 0.0049 35.4 11.5 137 436-573 378-534 (584)
319 smart00145 PI3Ka Phosphoinosit 39.2 1.4E+02 0.0031 31.4 8.6 75 903-984 45-119 (184)
320 PF13925 Katanin_con80: con80 38.8 53 0.0011 33.9 5.2 75 35-114 68-142 (164)
321 KOG0889 Histone acetyltransfer 38.6 1.6E+02 0.0034 43.5 10.8 152 860-1012 983-1159(3550)
322 PF01347 Vitellogenin_N: Lipop 38.4 1.8E+02 0.0039 36.3 11.0 85 916-1011 449-556 (618)
323 KOG2753 Uncharacterized conser 38.4 6.8E+02 0.015 28.9 14.5 96 556-659 160-259 (378)
324 KOG0368 Acetyl-CoA carboxylase 38.2 6.2E+02 0.013 35.0 15.1 187 422-615 812-1011(2196)
325 cd07920 Pumilio Pumilio-family 37.2 6.4E+02 0.014 28.4 14.4 13 833-845 34-46 (322)
326 COG5095 TAF6 Transcription ini 37.0 3.8E+02 0.0082 30.4 11.5 116 519-661 210-340 (450)
327 cd00864 PI3Ka Phosphoinositide 36.7 1.4E+02 0.0029 30.5 7.7 76 902-984 39-114 (152)
328 PLN03205 ATR interacting prote 36.6 2.7E+02 0.0059 32.6 10.6 145 859-1004 321-512 (652)
329 KOG0567 HEAT repeat-containing 35.8 4.7E+02 0.01 29.3 11.9 61 860-930 66-128 (289)
330 KOG0889 Histone acetyltransfer 35.7 3.2E+02 0.007 40.6 13.1 119 868-988 12-147 (3550)
331 PF00613 PI3Ka: Phosphoinositi 35.7 71 0.0015 33.6 5.7 75 903-984 46-120 (184)
332 COG5593 Nucleic-acid-binding p 35.6 3.1E+02 0.0068 33.3 11.1 59 872-934 202-260 (821)
333 smart00638 LPD_N Lipoprotein N 35.5 3.8E+02 0.0082 33.3 13.0 124 479-615 410-542 (574)
334 KOG2053 Mitochondrial inherita 35.4 9.8E+02 0.021 31.2 16.0 88 835-933 129-221 (932)
335 PF12422 Condensin2nSMC: Conde 35.1 5E+02 0.011 26.4 12.1 28 980-1007 120-147 (152)
336 KOG1993 Nuclear transport rece 34.7 1.9E+02 0.0041 36.8 9.6 130 864-994 529-671 (978)
337 PF14228 MOR2-PAG1_mid: Cell m 34.3 1.8E+02 0.0038 39.1 10.0 85 440-537 488-573 (1120)
338 PF14911 MMS22L_C: S-phase gen 34.1 5E+02 0.011 30.5 12.6 56 879-934 229-290 (373)
339 KOG4825 Component of synaptic 33.9 8.8E+02 0.019 29.0 14.1 180 433-618 404-597 (666)
340 KOG0567 HEAT repeat-containing 33.5 7.3E+02 0.016 27.9 15.8 89 901-1004 186-276 (289)
341 PF00514 Arm: Armadillo/beta-c 33.5 82 0.0018 24.1 4.4 28 903-930 13-40 (41)
342 KOG1810 Cell cycle-associated 33.2 6.7E+02 0.014 34.0 14.4 176 853-1029 775-989 (1417)
343 KOG1517 Guanine nucleotide bin 32.9 1.3E+02 0.0027 39.4 7.9 91 31-123 594-689 (1387)
344 PF14631 FancD2: Fanconi anaem 32.7 1E+03 0.023 33.2 17.1 101 896-998 429-533 (1426)
345 KOG2213 Apoptosis inhibitor 5/ 32.5 8.4E+02 0.018 28.9 13.6 156 820-1006 9-178 (460)
346 KOG1851 Uncharacterized conser 32.3 3.4E+02 0.0073 37.3 11.8 92 916-1007 1501-1597(1710)
347 KOG4368 Predicted RNA binding 32.2 1.1E+03 0.023 29.3 19.1 101 836-942 85-199 (757)
348 PF12726 SEN1_N: SEN1 N termin 32.2 5.6E+02 0.012 32.9 14.1 124 901-1024 119-259 (727)
349 PF02083 Urotensin_II: Urotens 32.1 16 0.00034 21.0 0.1 9 100-108 3-11 (12)
350 KOG1293 Proteins containing ar 31.5 1.2E+03 0.025 29.5 18.9 95 835-931 435-533 (678)
351 KOG2022 Nuclear transport rece 31.2 2.6E+02 0.0055 36.1 10.0 73 479-551 560-634 (982)
352 PF10193 Telomere_reg-2: Telom 30.2 4.9E+02 0.011 25.1 10.0 88 479-568 18-111 (114)
353 PF10151 DUF2359: Uncharacteri 30.1 8.3E+02 0.018 29.7 13.9 156 445-617 6-177 (469)
354 cd03571 ENTH_epsin ENTH domain 30.0 4.3E+02 0.0093 26.0 9.7 94 433-535 12-117 (123)
355 cd00872 PI3Ka_I Phosphoinositi 30.0 6.3E+02 0.014 26.3 11.4 78 902-986 39-116 (171)
356 KOG3818 DNA polymerase epsilon 29.5 1.3E+02 0.0028 35.7 6.7 75 50-125 20-94 (525)
357 PF11935 DUF3453: Domain of un 29.5 7.8E+02 0.017 26.9 15.5 62 870-932 2-73 (239)
358 KOG4199 Uncharacterized conser 29.3 8.4E+02 0.018 28.4 12.7 142 863-1006 285-442 (461)
359 PF04078 Rcd1: Cell differenti 29.3 4E+02 0.0086 29.8 10.2 128 874-1003 8-163 (262)
360 cd00869 PI3Ka_II Phosphoinosit 29.2 1.7E+02 0.0038 30.4 7.1 77 902-985 39-115 (169)
361 PF14631 FancD2: Fanconi anaem 28.9 9.7E+02 0.021 33.5 15.8 153 854-1012 428-587 (1426)
362 KOG1104 Nuclear cap-binding co 28.7 1.3E+03 0.029 29.4 15.9 120 855-998 46-167 (759)
363 PF04078 Rcd1: Cell differenti 28.4 6.4E+02 0.014 28.2 11.6 172 833-1006 9-216 (262)
364 cd06561 AlkD_like A new struct 27.9 2.8E+02 0.0061 28.7 8.8 75 864-944 108-182 (197)
365 KOG0929 Guanine nucleotide exc 27.7 3.9E+02 0.0084 36.9 11.4 99 833-932 1188-1299(1514)
366 smart00185 ARM Armadillo/beta- 27.7 97 0.0021 23.0 3.9 27 980-1006 13-39 (41)
367 cd00870 PI3Ka_III Phosphoinosi 27.6 2.1E+02 0.0046 29.6 7.4 78 902-986 46-123 (166)
368 COG5537 IRR1 Cohesin [Cell div 26.8 1.1E+03 0.024 29.5 13.9 92 833-930 289-385 (740)
369 COG5231 VMA13 Vacuolar H+-ATPa 26.4 1E+03 0.023 27.4 13.2 66 937-1004 356-424 (432)
370 KOG2219 Uncharacterized conser 26.3 1.5E+02 0.0033 36.5 6.8 146 872-1018 38-206 (864)
371 KOG2056 Equilibrative nucleosi 26.2 2.9E+02 0.0063 31.9 8.8 73 858-930 54-137 (336)
372 PF12335 SBF2: Myotubularin pr 26.0 1.7E+02 0.0038 31.8 6.7 117 4-132 4-129 (225)
373 KOG2072 Translation initiation 25.1 8.2E+02 0.018 31.6 12.7 87 836-925 24-111 (988)
374 PF13925 Katanin_con80: con80 24.7 7.7E+02 0.017 25.3 11.6 44 857-900 65-108 (164)
375 PF07159 DUF1394: Protein of u 24.6 1.9E+02 0.0042 32.9 7.0 76 441-517 18-96 (303)
376 KOG1789 Endocytosis protein RM 24.4 6E+02 0.013 33.8 11.4 129 437-569 1739-1880(2235)
377 PF14677 FANCI_S3: FANCI solen 24.4 7.1E+02 0.015 27.0 11.1 33 912-944 88-123 (219)
378 KOG1048 Neural adherens juncti 24.3 4.2E+02 0.0091 33.7 10.3 67 865-931 237-304 (717)
379 PF06025 DUF913: Domain of Unk 24.0 8.9E+02 0.019 28.5 12.7 70 861-930 106-183 (379)
380 smart00273 ENTH Epsin N-termin 23.9 6.7E+02 0.015 24.3 10.1 63 432-501 12-75 (127)
381 PF09758 FPL: Uncharacterised 23.6 7.3E+02 0.016 25.4 10.1 112 895-1007 18-148 (149)
382 KOG2122 Beta-catenin-binding p 23.6 1.4E+03 0.031 31.9 14.8 42 911-952 380-424 (2195)
383 smart00229 RasGEFN Guanine nuc 23.5 5.4E+02 0.012 24.7 9.3 71 462-541 8-89 (127)
384 PF14750 INTS2: Integrator com 23.0 2E+03 0.043 29.5 17.2 109 902-1018 920-1036(1049)
385 COG5110 RPN1 26S proteasome re 22.6 3.5E+02 0.0077 33.1 8.7 132 468-632 49-206 (881)
386 PF08349 DUF1722: Protein of u 22.4 7.1E+02 0.015 24.0 10.9 96 838-936 10-105 (117)
387 COG1980 Archaeal fructose 1,6- 22.2 69 0.0015 35.3 2.7 49 472-521 308-363 (369)
388 PF14663 RasGEF_N_2: Rapamycin 22.0 7.2E+02 0.016 23.9 10.9 33 860-892 7-39 (115)
389 PF04499 SAPS: SIT4 phosphatas 22.0 1.3E+02 0.0029 36.5 5.4 72 529-619 21-93 (475)
390 PF04869 Uso1_p115_head: Uso1 21.9 1.8E+02 0.0039 33.3 6.2 173 434-621 50-234 (312)
391 KOG2611 Neurochondrin/leucine- 21.9 1.5E+03 0.032 27.6 16.7 112 818-932 13-141 (698)
392 PF06371 Drf_GBD: Diaphanous G 21.9 1.2E+02 0.0026 31.3 4.5 54 875-929 130-185 (187)
393 KOG1837 Uncharacterized conser 21.8 5.4E+02 0.012 35.5 11.0 75 859-933 1539-1613(1621)
394 KOG3629 Guanine-nucleotide rel 21.8 7.3E+02 0.016 30.4 11.0 167 464-638 104-286 (728)
395 PF06169 DUF982: Protein of un 21.6 2.5E+02 0.0054 25.1 5.8 48 58-109 21-68 (76)
396 KOG2056 Equilibrative nucleosi 21.6 5.6E+02 0.012 29.7 9.8 43 488-533 40-82 (336)
397 PF08389 Xpo1: Exportin 1-like 21.5 7.4E+02 0.016 23.9 13.4 114 839-960 27-147 (148)
398 PF12397 U3snoRNP10: U3 small 21.4 3.9E+02 0.0083 25.7 7.7 93 33-135 3-95 (121)
399 PF08326 ACC_central: Acetyl-C 21.2 32 0.00069 43.9 0.0 144 462-615 112-256 (708)
400 KOG2050 Puf family RNA-binding 20.6 8.3E+02 0.018 30.4 11.3 177 440-629 209-415 (652)
401 KOG1823 DRIM (Down-regulated i 20.5 1.3E+03 0.029 31.7 14.0 63 967-1029 551-615 (1364)
402 PF14911 MMS22L_C: S-phase gen 20.3 8.1E+02 0.018 28.9 11.1 41 499-539 248-290 (373)
No 1
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=100.00 E-value=5.3e-43 Score=388.08 Aligned_cols=506 Identities=24% Similarity=0.356 Sum_probs=366.6
Q ss_pred HHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhc-
Q 001582 439 RVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLI- 517 (1049)
Q Consensus 439 R~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~~ll~klg- 517 (1049)
..+|...|..++..-.... .+++.+...+.+.+.+.+-+. .|+++..++..+-+.+..|+..-+-.+|.|.|
T Consensus 2 k~~~~~~l~~~i~d~~~~~----~~~k~~~~~~~~~~~e~~~~~---~l~~~S~~~rt~~srls~w~~l~l~k~~~k~g~ 74 (516)
T KOG2956|consen 2 KREGIKNLNQIITDPNLCP----LEIKNIGDTLNRLLAEGNNTL---VLETISIFVKTHYSRLSNWLKLALGKLFAKKGA 74 (516)
T ss_pred cchhhhhhhhhhcccccCh----HHHHHHhhhHHHhhhccccee---eeehhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777776544222 356777788888787766554 34999999988889999999999999999996
Q ss_pred CCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhccC---CCHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhH
Q 001582 518 DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ---RSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKL 594 (1049)
Q Consensus 518 D~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~---~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 594 (1049)
+....+......+...+...|++..|+. +..++.++ ..||.+...++|++..+.+|. ......++++++..+.++
T Consensus 75 ~~l~n~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~-~~g~s~~t~~~~~s~rkm 152 (516)
T KOG2956|consen 75 EALPNVKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYP-ERGTSPNTKETKAAIRKM 152 (516)
T ss_pred HhhhhHHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhccccccc-ccCCCCCCCcchhhhhhc
Confidence 8898899999999999999999999999 88888875 479999999999998888874 333345678899999999
Q ss_pred ccccCC-CC-HHHHHHHHHHHHHHHHhcCchhHHHHhhcCCHHHHHHHHHHHhhhchhHHHHHHHHHHhhhhhhccCCCC
Q 001582 595 TPLVHD-KN-TKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSY 672 (1049)
Q Consensus 595 ~~~~~D-kn-~~VR~aA~~~L~~ly~h~~~~~~~~~l~~L~~~~~~~~~~aL~~~~p~~~~~l~~~l~~~~~~~~~~s~~ 672 (1049)
.+|+.| +. .-+-......|-++|..+ -..|......|++.+.+-...-+ +..+.- ++++
T Consensus 153 ~~~~~d~~~~~l~~~~v~s~l~~~~~~n-~a~fss~~d~l~p~~rD~~~~~~---------------~~n~~~---~~~~ 213 (516)
T KOG2956|consen 153 FPWMFDPRIENLLTPHVESSLCSLFALN-NADFSSLFDLLNPEKRDWAYDSL---------------QSNGID---NGSP 213 (516)
T ss_pred cccccCchhhccccHHHHHHHHHHHHHH-hhchHhhhhccChhhhhhHHHHH---------------HhhCcC---CCCC
Confidence 999998 32 222223333444444433 12233333335555443332212 222111 0011
Q ss_pred CCCCCC-CCCCcccccccccCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCchhhhhhhhhccccCCCccCCc
Q 001582 673 DPSDVV-GTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSS 751 (1049)
Q Consensus 673 ~~~~~~-~~~s~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~e~~~q~~~~~~~~~~~~ 751 (1049)
++.... +..++..+...+- ++ ++.+ .++..+..-+.+ +.+...+...
T Consensus 214 ~~~a~~e~~~~~~n~~~~~~--------~~----P~~~--------------~~~~~~~~~~~~------~~~~~n~~~~ 261 (516)
T KOG2956|consen 214 SPSAEKERFDSSNNKPSLPL--------SP----PEEE--------------KPGLGSTKVNPE------ELRLSNETER 261 (516)
T ss_pred CchhhhcccccccccccccC--------CC----hhhc--------------ccCCCccccCcc------ccccccchhh
Confidence 110000 0000000000000 00 0000 000000000000 0000000000
Q ss_pred ccccCCCCCCCcCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCCCCCCHHHHHHHhccCCCC
Q 001582 752 KTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDG 831 (1049)
Q Consensus 752 ~~~d~~~~~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~lL~~l~~~~~~ 831 (1049)
+.+.+ +.. |..+.+. ++ ....++.+.|.++|++++++ ++
T Consensus 262 ~~~l~--------e~~------------------~~~~~~~-----~~---------p~~~~~~~~v~~~l~~~~g~-e~ 300 (516)
T KOG2956|consen 262 LSRLE--------EYS------------------TDDSMDQ-----LT---------PNSVDQSALVADLLKEISGS-ER 300 (516)
T ss_pred hhhch--------hhc------------------cCcchhh-----CC---------CCCcchhHHHHHHHHhccCc-cc
Confidence 00000 000 0000000 00 11223556688899998877 34
Q ss_pred ChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 001582 832 SPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV 910 (1049)
Q Consensus 832 ~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D-~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~ 910 (1049)
.+++++||.+|..++.++++.+|.+||++||..++++|.| .+..+++.||++|++||++|+.+|.++.|+.+.++|++
T Consensus 301 -a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 301 -ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred -hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999 78889999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcC
Q 001582 911 TKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 990 (1049)
Q Consensus 911 ~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D 990 (1049)
.+|++++|.+.|++++..++..++|.+|+.++.|+|.+.++++.++||||++++++++..++|...+++|+|+++++|+.
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S 459 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDS 459 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcC
Confidence 99999999999999888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhh-hhHHHhhhcCChhhHHHHHHHHHHhhhcccCCCCC
Q 001582 991 QSADVRKTVVFCLVDIYIMLG-KAFLPYLERLNSTQLRLVTIYANRISQARTGTTID 1046 (1049)
Q Consensus 991 ~~seVRKaAv~clv~l~~~lG-e~l~p~l~~L~~s~~kLL~~yi~R~~~~r~~~~~~ 1046 (1049)
+++.|||+||||||++|.++| +++.|||.+|+.++++||++||+|+++.++|+++|
T Consensus 460 ~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s~~s~a~~~ 516 (516)
T KOG2956|consen 460 TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASSSSSGASSD 516 (516)
T ss_pred chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhcccCCCCCC
Confidence 999999999999999999999 79999999999999999999999999999999876
No 2
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=99.84 E-value=6.6e-19 Score=215.26 Aligned_cols=531 Identities=15% Similarity=0.124 Sum_probs=328.1
Q ss_pred CHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcc
Q 001582 421 SLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKP 500 (1049)
Q Consensus 421 ~l~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~ 500 (1049)
.++.-+.. .+.|++||+|+|||+.+..++++.+..++ ..-.+.++-.++.++.|+|.+|+..++.+|..|+..++..
T Consensus 253 ki~~~l~t-~~~s~~WK~R~Eale~l~~~l~e~~~~~~--~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 253 KITKNLET-EMLSKKWKDRKEALEELVAILEEAKKEIV--KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred hcChHHHH-hhhccchHHHHHHHHHHHHHHhccccccc--cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence 34444443 56799999999999999999998772222 1345667777788999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCC
Q 001582 501 FESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEG 580 (1049)
Q Consensus 501 ~~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~ 580 (1049)
|.+|...++|.||.+++|.|..+|+.+.++++.|.++++.+.+++.++.++. .+||..|.+++.|+...+..+ ++.
T Consensus 330 ~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk-~knp~~k~~~~~~l~r~~~~~--~~~- 405 (815)
T KOG1820|consen 330 FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALK-GKNPQIKGECLLLLDRKLRKL--GPK- 405 (815)
T ss_pred hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhc-CCChhhHHHHHHHHHHHHhhc--CCc-
Confidence 9999999999999999999999999999999999999999999999987776 589999999999998877653 321
Q ss_pred CCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 001582 581 SGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQ 660 (1049)
Q Consensus 581 ~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~h~~~~~~~~~l~~L~~~~~~~~~~aL~~~~p~~~~~l~~~l~ 660 (1049)
-.........++.+++...|++.+||+||-++++++|+++|.+.+.+.|.++.+.+..+...-+++.+ .+..
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~~~~~~~E~~~p~~--------~~~~ 477 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQDIKPKEEKLKPLL--------HFLA 477 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhhhhhhccccc--------cccc
Confidence 11235678889999999999999999999999999999999877777776664431111111111100 0000
Q ss_pred hhhhhhccCCCCCCCCCCC-CCCcccccccccCCCCCCCCCCCCCCCCCCCCcccccccccccc-C----CCCCCchhhh
Q 001582 661 SKKERQRLKSSYDPSDVVG-TSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTG-S----MGHAMSDETK 734 (1049)
Q Consensus 661 ~~~~~~~~~s~~~~~~~~~-~~s~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~s~~~~ 734 (1049)
..+... +.+++....+ .....+ .+......++... ...+..+.+....... . ..+...++.+
T Consensus 478 ~~~~~~---~a~~~~~~~~~~~~~~~---~~~~~~~p~~~~a------~vps~~ss~~~~~~~~~~~~~~~~~~~~~~~~ 545 (815)
T KOG1820|consen 478 APKEKS---SAPDPQVEKLKKVVKVG---LSNFSGLPKNSAA------SVPSKLSSANSSRKIPEAAEAPKLQLSLKEQR 545 (815)
T ss_pred cCCCcC---CCCCccccccceecccc---cccCCCCCCCccc------cCCCcccccccccCCcchhhccccccccccch
Confidence 000000 0111100000 000000 0000000000000 0000000000000000 0 0000000000
Q ss_pred hhhhhccccCCCccCCcccccCCCCCCCcCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCCC
Q 001582 735 ENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDA 814 (1049)
Q Consensus 735 e~~~q~~~~~~~~~~~~~~~d~~~~~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1049)
+ . ......+..|.+..|..|..+.. ...+... ....+++++
T Consensus 546 ~-------------~-----~~~~r~~~p~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~d-------------- 586 (815)
T KOG1820|consen 546 V-------------V-----LGTRRKVSPKTVVAPVDDKKEPS-----KKFVPKS--LAKSMKLDD-------------- 586 (815)
T ss_pred h-------------h-----hhhhhccCccccccchhhhhccc-----ccccchh--hhhccCccc--------------
Confidence 0 0 00000011122222222211000 0000000 000111111
Q ss_pred CCCHHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhh
Q 001582 815 GPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD 894 (1049)
Q Consensus 815 ~~~I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~ 894 (1049)
...-.++++.++.....+...+ ..++...+.++.....+.+.......+.++.....-.+.
T Consensus 587 ------------------~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~l~~~~lr~~~~~~~~~~~~~e~l~~~~~~~~l 647 (815)
T KOG1820|consen 587 ------------------FKQHTAKLEILQRAEAANSKEY-TSIQDLLLEWLVLRFEETNEALLGKVLELLIAEFQTLRL 647 (815)
T ss_pred ------------------hhhhhhhhhhhhhhhccccccc-chHHhhhhHHHHHHhhcccHHhhhhhhhhhhhhhhhcch
Confidence 1122334444444333333333 345777788888888899888887778888776653221
Q ss_pred h----hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCH
Q 001582 895 V----MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQ 970 (1049)
Q Consensus 895 ~----~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~ 970 (1049)
. .......+.+.+..+.+..+..++..........+.++......+.+...|..++-.++..|+.+...++..-+.
T Consensus 648 ~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~~~~~~~~~~~l~~~~~~~r~~~l~~i~~~~~~~g~ 727 (815)
T KOG1820|consen 648 IEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLSVLMMVPSLREALELKEREIRSEELLVIKLLFSSEGT 727 (815)
T ss_pred hhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhccccccchhhHhhccccchhhHHHHhhhhheeeccCCc
Confidence 1 111122233555557777778888888888888888888777888888888888888888999888887776666
Q ss_pred HHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHhhh
Q 001582 971 EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQ 1038 (1049)
Q Consensus 971 ~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l~~L~~s~~kLL~~yi~R~~~ 1038 (1049)
..+.. + .++..+.-...+.+..+++.+-.|++..+..+|+.+|.+...+.+.+...+...+.+-..
T Consensus 728 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 793 (815)
T KOG1820|consen 728 SILKS-L-RVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDPSWKISILQADTDKSRIEKMFPKERR 793 (815)
T ss_pred chhhh-H-hhhhcccccccccchhhhhhhhcccccccccccchHHHHHHHhhHHHhhhHHHhcCcccc
Confidence 55521 1 112233444458899999999999999999999999999999999999999998877544
No 3
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.82 E-value=2e-19 Score=194.31 Aligned_cols=199 Identities=18% Similarity=0.280 Sum_probs=144.3
Q ss_pred ChhHHHHHHHHHHHHHhcCCc----cchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 001582 832 SPTSKHGALQQLIKASVANDH----SIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKL 907 (1049)
Q Consensus 832 ~~~eR~~aL~~L~~li~~~~~----~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~L 907 (1049)
+|++|.+||..|..+++.+.. ..+.+++..++..+...+.|.++.|...||.+|..|+..++..|++|++.++|.|
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~L 99 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPL 99 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 399999999999999988821 2233345556668888889999999999999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHhhcC-chhh-HHhhhhhhcccchhHHHHHHHHHHHHHhhcC--HHHHHh--hhhhHH
Q 001582 908 LHVTKDAVPKVSNEAEHCLTVVLSQYD-PFRC-LSVIVPLLVTEDEKTLVTCINCLTKLVGRLS--QEELMA--QLPSFL 981 (1049)
Q Consensus 908 l~~~~Ds~~~Vr~aA~~~l~~i~~~~~-p~~~-l~vL~p~l~s~~~~t~~~al~~L~~lie~~~--~~~l~~--~L~~ii 981 (1049)
+++++|+++.|+++|..|+..|+.+++ +.++ +.++..++.++++..+..|++++..+++.|+ ...+.. .++.++
T Consensus 100 l~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~ 179 (228)
T PF12348_consen 100 LKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLV 179 (228)
T ss_dssp HHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHH
Confidence 999999999999999999999999999 5666 8999999999999999999999999999998 444433 358899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHH
Q 001582 982 PALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVT 1030 (1049)
Q Consensus 982 p~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l~~L~~s~~kLL~ 1030 (1049)
+.+.+++.|++++||++|..|++.+|.++|+...-.+..|++..+|+|+
T Consensus 180 ~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~qk~le 228 (228)
T PF12348_consen 180 KALVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDPNIQKYLE 228 (228)
T ss_dssp HHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhcccccCC
Confidence 9999999999999999999999999999999888888999999999885
No 4
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.79 E-value=1.6e-18 Score=187.27 Aligned_cols=193 Identities=24% Similarity=0.429 Sum_probs=140.3
Q ss_pred CCCCChHHHHHHHHHHHHHHhcC--CCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Q 001582 431 SPSSDWCARVSAFNYLRSLLQQG--PKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERI 508 (1049)
Q Consensus 431 ~~s~~WkeR~egL~~L~~ll~~~--~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~l 508 (1049)
..+.||++|.+||+.|+.++..+ ......+...++.+...+.+.+.|.+++|+..++.++..++..++..|++|+..+
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 46899999999999999999987 2222333345667778999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhhhHHHHHHHHHHHhhcC-CcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCCCCChhhH
Q 001582 509 LPHVFSRLIDPKELVRQPCSTTLDIVSKTYS-VDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGIL 587 (1049)
Q Consensus 509 L~~ll~klgD~k~~vR~~a~~~L~~~~e~~~-~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~ 587 (1049)
+|.||+++||.|..||+.|..||..+.+.++ ...++..++.....++||++|.++++|+...+..+......+.....+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 9999999999999999999999999999999 555533333344456999999999999988776532112223333446
Q ss_pred HHHHHhHccccCCCCHHHHHHHHHHHHHHHHhcCch
Q 001582 588 KLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDST 623 (1049)
Q Consensus 588 ~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~h~~~~ 623 (1049)
..++..|..++.|.+++||++|..++..+|.|++..
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 778888999999999999999999999999998743
No 5
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=99.76 E-value=6.1e-17 Score=198.18 Aligned_cols=214 Identities=15% Similarity=0.212 Sum_probs=189.3
Q ss_pred HHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHH
Q 001582 819 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMED 898 (1049)
Q Consensus 819 ~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~ 898 (1049)
..+..++.+.+ |.+|.+||+++...+.+...+....+++.+..++.-.+.|.|.+|...++.+|..|++.++..|.+
T Consensus 256 ~~l~t~~~s~~---WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 256 KNLETEMLSKK---WKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred hHHHHhhhccc---hHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 45566666654 999999999999999877744444456666666777789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHH-HHhhh
Q 001582 899 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEE-LMAQL 977 (1049)
Q Consensus 899 ~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~-l~~~L 977 (1049)
|+..++|.||++++|.+..++.++..|++.++..++..++++++...+..++.+.+..|..++...+...++.. ....+
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~ 412 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV 412 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887433 34567
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh-HHHhhhcCChhhHHHHHHHHHH
Q 001582 978 PSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKA-FLPYLERLNSTQLRLVTIYANR 1035 (1049)
Q Consensus 978 ~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~-l~p~l~~L~~s~~kLL~~yi~R 1035 (1049)
..++|.+++..+|++.+||+||..|+++++.++|++ +..+|..+.+..++++.+.+++
T Consensus 413 ~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~~~~~~~E~~~p 471 (815)
T KOG1820|consen 413 KTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQDIKPKEEKLKP 471 (815)
T ss_pred HHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhhhhhhccc
Confidence 889999999999999999999999999999999985 7899999998777888887777
No 6
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=6.9e-12 Score=146.43 Aligned_cols=185 Identities=17% Similarity=0.197 Sum_probs=157.8
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSS-VREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT 911 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~-vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~ 911 (1049)
-.+|..|-..+..+++........+ ..++..|.+.+.|++.. .|+.++......+.+++..|++|+-.++|.++.++
T Consensus 148 ~~~~~~aa~~~ag~v~g~~i~~~~~--~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~ 225 (569)
T KOG1242|consen 148 IAERAGAAYGLAGLVNGLGIESLKE--FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNF 225 (569)
T ss_pred HHHHhhhhHHHHHHHcCcHHhhhhh--hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh
Confidence 6799999999999987765543332 23677888888998866 55568888888899999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhh---hcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHh
Q 001582 912 KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPL---LVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAF 988 (1049)
Q Consensus 912 ~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~---l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~ 988 (1049)
+|..++||.+|..+++++..++++..+-.+|.+. +...+|+++..++++++.+.+. .+.++..++|.++|.|.+.+
T Consensus 226 ~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~-ap~qLs~~lp~iiP~lsevl 304 (569)
T KOG1242|consen 226 GDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADC-APKQLSLCLPDLIPVLSEVL 304 (569)
T ss_pred hccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh-chHHHHHHHhHhhHHHHHHH
Confidence 9999999999999999999999998654444444 4446899999999999976654 57999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhh-hHHHhhhc
Q 001582 989 GNQSADVRKTVVFCLVDIYIMLGK-AFLPYLER 1020 (1049)
Q Consensus 989 ~D~~seVRKaAv~clv~l~~~lGe-~l~p~l~~ 1020 (1049)
+|++++||+++..||..+..++.+ ++.+|++.
T Consensus 305 ~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~ 337 (569)
T KOG1242|consen 305 WDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPT 337 (569)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 999999999999999999999997 78888765
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=4.9e-09 Score=129.56 Aligned_cols=413 Identities=20% Similarity=0.280 Sum_probs=271.8
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhhcCC----
Q 001582 465 EKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSV---- 540 (1049)
Q Consensus 465 ~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~---- 540 (1049)
.+|...|..-.+++|.+.-.++|-+|..+....+..+.+|+..+++-+.+.|+|.-..||..+..|+.++....+.
T Consensus 117 Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~ 196 (1075)
T KOG2171|consen 117 PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSE 196 (1075)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHH
Confidence 4677777888899999999999999999999999999999999999999999999888999999999999988762
Q ss_pred ----cchHHHHHHhhccC---CCHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhHccc----cC--CCCHHHHH
Q 001582 541 ----DSLLPALLRSLDEQ---RSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPL----VH--DKNTKLKE 607 (1049)
Q Consensus 541 ----d~~l~~L~r~l~~~---~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~----~~--Dkn~~VR~ 607 (1049)
..++|.++..+.+. ++-++-..+|+-+.+.+.. .+.-++..+..|+++ .. +.+..+|-
T Consensus 197 ~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~---------~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~ 267 (1075)
T KOG2171|consen 197 VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLES---------EPKLLRPHLSQIIQFSLEIAKNKELENSIRH 267 (1075)
T ss_pred HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 23556555555432 3445556677777653321 123455566666653 23 36789999
Q ss_pred HHHHHHHHHHHhcCchhHHHHhhcCCHHHHHHHHHHHhhhchhHHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccc
Q 001582 608 AAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYA 687 (1049)
Q Consensus 608 aA~~~L~~ly~h~~~~~~~~~l~~L~~~~~~~~~~aL~~~~p~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~ 687 (1049)
.|..+|+.+.+. .+.+.+.... +.+. .+.-.|.- ..+ .
T Consensus 268 ~ALe~ivs~~e~--Ap~~~k~~~~---------------~~~~---lv~~~l~~-------------------mte-~-- 305 (1075)
T KOG2171|consen 268 LALEFLVSLSEY--APAMCKKLAL---------------LGHT---LVPVLLAM-------------------MTE-E-- 305 (1075)
T ss_pred HHHHHHHHHHHh--hHHHhhhchh---------------hhcc---HHHHHHHh-------------------cCC-c--
Confidence 999999998763 2323332111 1111 11111110 000 0
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCchhhhhhhhhccccCCCccCCcccccCCCCCCCcCCCC
Q 001582 688 VASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFS 767 (1049)
Q Consensus 688 ~~~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~e~~~q~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 767 (1049)
..|.+ |.. +++..|+ +..
T Consensus 306 -----------------~~D~e--w~~---------------~d~~ded----------------------------~~~ 323 (1075)
T KOG2171|consen 306 -----------------EDDDE--WSN---------------EDDLDED----------------------------DEE 323 (1075)
T ss_pred -----------------ccchh--hcc---------------ccccccc----------------------------ccc
Confidence 00000 100 0000000 000
Q ss_pred CC-cccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCCCCCCHHHHHHHhccCCCCChhHHHHHHHHHHHH
Q 001582 768 TP-RIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKA 846 (1049)
Q Consensus 768 ~P-r~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~lL~~l~~~~~~~~~eR~~aL~~L~~l 846 (1049)
+| +.-...++ -+ ++ ...+++ .-+.+-+.+..+.... +|.+|++||..|..+
T Consensus 324 ~~~~~A~~~lD-rl-A~---~L~g~~---------------------v~p~~~~~l~~~l~S~--~w~~R~AaL~Als~i 375 (1075)
T KOG2171|consen 324 TPYRAAEQALD-RL-AL---HLGGKQ---------------------VLPPLFEALEAMLQST--EWKERHAALLALSVI 375 (1075)
T ss_pred CcHHHHHHHHH-HH-Hh---cCChhh---------------------ehHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH
Confidence 01 00000000 00 00 000000 0011223333333332 299999999987654
Q ss_pred HhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHhCCCc-HHHHHHHHH
Q 001582 847 SVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS-VEIVIEKLLHVTKDAV-PKVSNEAEH 924 (1049)
Q Consensus 847 i~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~-~e~lLp~Ll~~~~Ds~-~~Vr~aA~~ 924 (1049)
-+|..+...+++.+|+..++..|.|+++.||-+||.+|..|..+....+..+ .+.++|.|+....+.. ..|...|..
T Consensus 376 -~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~ 454 (1075)
T KOG2171|consen 376 -AEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAA 454 (1075)
T ss_pred -HcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHH
Confidence 4777777788999999999999999999999999999999999999888855 5556667777666653 477788888
Q ss_pred HHHHHHhhcCchhhHHhhhhhhcc--------cchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCC----
Q 001582 925 CLTVVLSQYDPFRCLSVIVPLLVT--------EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQS---- 992 (1049)
Q Consensus 925 ~l~~i~~~~~p~~~l~vL~p~l~s--------~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~---- 992 (1049)
|+..+.+-|+.+.+-+||.+++.. .....+-.++..++.+.+.. .+.+.++.+.+||.|.+.+.+.+
T Consensus 455 al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA-~~~F~pY~d~~Mp~L~~~L~n~~~~d~ 533 (1075)
T KOG2171|consen 455 ALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA-QEKFIPYFDRLMPLLKNFLQNADDKDL 533 (1075)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH-hhhhHhHHHHHHHHHHHHHhCCCchhh
Confidence 888888999998888888777652 22334455677777777665 35667899999999999998665
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hHHHhhhc
Q 001582 993 ADVRKTVVFCLVDIYIMLGK-AFLPYLER 1020 (1049)
Q Consensus 993 seVRKaAv~clv~l~~~lGe-~l~p~l~~ 1020 (1049)
-++|-....|+..+-..+|+ +|.|+-..
T Consensus 534 r~LrgktmEcisli~~AVGke~F~~~a~e 562 (1075)
T KOG2171|consen 534 RELRGKTMECLSLIARAVGKEKFLPLAEE 562 (1075)
T ss_pred HHHHhhHHHHHHHHHHHhhhhhhhHhHHH
Confidence 56777788999999999995 68887644
No 8
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=2.4e-08 Score=117.23 Aligned_cols=176 Identities=18% Similarity=0.232 Sum_probs=133.2
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhC
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK 912 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~ 912 (1049)
|.+..++++-|. .+....+.....++.++++.|.+.|-|+.+.||.++-.+|..++.-... +-+..++|.|+++++
T Consensus 268 WrtK~aslellg-~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip~Lld~l~ 343 (569)
T KOG1242|consen 268 WRTKMASLELLG-AMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIPTLLDALA 343 (569)
T ss_pred hhhHHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhc
Confidence 666777777555 3334445555678899999999999999999999999998888753322 337789999999999
Q ss_pred CCcHHHHHHHHHHHH-HHHhhcCchhhHHhhhhhhccc----chhHHHHHHHHHHHHHhhc-CHHHHHhhhhhHHHHHHH
Q 001582 913 DAVPKVSNEAEHCLT-VVLSQYDPFRCLSVIVPLLVTE----DEKTLVTCINCLTKLVGRL-SQEELMAQLPSFLPALFE 986 (1049)
Q Consensus 913 Ds~~~Vr~aA~~~l~-~i~~~~~p~~~l~vL~p~l~s~----~~~t~~~al~~L~~lie~~-~~~~l~~~L~~iip~L~~ 986 (1049)
|+...+-+..+.... +++..+.+ .-+.+++|++..+ +..++..+....+.+..-+ .+..+...|+.++|+|-+
T Consensus 344 dp~~~~~e~~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~ 422 (569)
T KOG1242|consen 344 DPSCYTPECLDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKE 422 (569)
T ss_pred CcccchHHHHHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHH
Confidence 998787777776554 55555555 3456677777642 2334444455555555555 678899999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhhhh
Q 001582 987 AFGNQSADVRKTVVFCLVDIYIMLGKA 1013 (1049)
Q Consensus 987 ~~~D~~seVRKaAv~clv~l~~~lGe~ 1013 (1049)
.+.|+.+|||-.+.++|..+..-+|+.
T Consensus 423 ~~~d~~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 423 NLDDAVPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999963
No 9
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=9.8e-08 Score=118.36 Aligned_cols=393 Identities=16% Similarity=0.195 Sum_probs=272.5
Q ss_pred CHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHHHHhcCc
Q 001582 421 SLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHL-DDPHHKVAQAALSTLADIIPSCRK 499 (1049)
Q Consensus 421 ~l~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l-~Dsn~kV~~~aL~tL~~l~~~~~~ 499 (1049)
.+.+.|. .+-+.|-..|++|=+.++++....+ +...|...+ .-.|..|-|++.-.+-.++..|.+
T Consensus 5 ~l~qLl~--~l~spDn~vr~~Ae~~l~~~~~~~~------------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~ 70 (1075)
T KOG2171|consen 5 PLEQLLQ--QLLSPDNEVRRQAEEALETLAKTEP------------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWS 70 (1075)
T ss_pred HHHHHHH--HhcCCCchHHHHHHHHHHHhhcccc------------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhh
Confidence 3567777 4567777779999999998876533 223333333 356778888888888888888776
Q ss_pred chH-HHHHHHHHHHHHHh-cCCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhccC---CCHHHHHHHHHHHHHHhhhh
Q 001582 500 PFE-SYMERILPHVFSRL-IDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ---RSPKAKLAVIEFAISSLNKH 574 (1049)
Q Consensus 500 ~~~-~~l~~lL~~ll~kl-gD~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~---~~pkvk~~~L~~l~~~l~~~ 574 (1049)
.+. .--..+...||... -+...+||.+.-.++-.++..--++ .-+.|..+++.. .||..|.-++.-|. .+.++
T Consensus 71 ~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~-s~~~~ 148 (1075)
T KOG2171|consen 71 RLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILS-SLPET 148 (1075)
T ss_pred cCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHH-hhhhh
Confidence 664 44456677778777 6899999999998888888665555 568888888652 58899998887664 56553
Q ss_pred ccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCHHHHHHHHHHHhhhchhHHHH
Q 001582 575 AMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVD 654 (1049)
Q Consensus 575 ~~~~~~~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~h~~~~~~~~~l~~L~~~~~~~~~~aL~~~~p~~~~~ 654 (1049)
.+. .....+..++.-+.++++|.+.-||-+|..+++++..... -++.+...++..|+ .+-..
T Consensus 149 -~~~---~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~----------~~~~~~~~~~~llP----~~l~v 210 (1075)
T KOG2171|consen 149 -FGN---TLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLE----------NNKSEVDKFRDLLP----SLLNV 210 (1075)
T ss_pred -hcc---ccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhc----------cchHHHHHHHHHhH----HHHHH
Confidence 221 1234566767777789999666699999999999775321 11222221111111 00000
Q ss_pred HHHHHHhhhhhhccCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCchhhh
Q 001582 655 LMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETK 734 (1049)
Q Consensus 655 l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 734 (1049)
+...
T Consensus 211 l~~~---------------------------------------------------------------------------- 214 (1075)
T KOG2171|consen 211 LQEV---------------------------------------------------------------------------- 214 (1075)
T ss_pred hHhh----------------------------------------------------------------------------
Confidence 0000
Q ss_pred hhhhhccccCCCccCCcccccCCCCCCCcCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCCC
Q 001582 735 ENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDA 814 (1049)
Q Consensus 735 e~~~q~~~~~~~~~~~~~~~d~~~~~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1049)
T Consensus 215 -------------------------------------------------------------------------------- 214 (1075)
T KOG2171|consen 215 -------------------------------------------------------------------------------- 214 (1075)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhh
Q 001582 815 GPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA--DSSVREVALSLINEMLKNQ 892 (1049)
Q Consensus 815 ~~~I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~--n~~vr~~AL~~L~~L~~~~ 892 (1049)
+.+.+ .+.-..+|+.|.+++. ..+.+...+|.+|+...+++.+++ +..+|..||.+|..+.+.-
T Consensus 215 ----------i~~~d---~~~a~~~l~~l~El~e-~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A 280 (1075)
T KOG2171|consen 215 ----------IQDGD---DDAAKSALEALIELLE-SEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA 280 (1075)
T ss_pred ----------hhccc---hHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh
Confidence 00000 0011234444444442 233455678899999999999775 5679999999999999873
Q ss_pred hh---hhHHHHHHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHHHhhcCchhhHHhhhhhh----ccc
Q 001582 893 KD---VMEDSVEIVIEKLLHVTKDA----------------VPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLL----VTE 949 (1049)
Q Consensus 893 ~~---~~~~~~e~lLp~Ll~~~~Ds----------------~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l----~s~ 949 (1049)
+. ...+|...+++.++..+.|- ...-...|+++++.++.+++|..+++.+.+.+ ++.
T Consensus 281 p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~ 360 (1075)
T KOG2171|consen 281 PAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQST 360 (1075)
T ss_pred HHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCC
Confidence 32 33467778888888776421 12357789999999999999998777776665 578
Q ss_pred chhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 001582 950 DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYL 1018 (1049)
Q Consensus 950 ~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l 1018 (1049)
+|+.|.+++-.|.-+.|-+ .+.+..+|+.|+|.+..++.|+.+-||-||++|+..+-.-+..++.++.
T Consensus 361 ~w~~R~AaL~Als~i~EGc-~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~ 428 (1075)
T KOG2171|consen 361 EWKERHAALLALSVIAEGC-SDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH 428 (1075)
T ss_pred CHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence 9999999999998888776 4777789999999999999999999999999999998887776665443
No 10
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.05 E-value=5.9e-07 Score=108.46 Aligned_cols=432 Identities=19% Similarity=0.259 Sum_probs=261.1
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Q 001582 431 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILP 510 (1049)
Q Consensus 431 ~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~ 510 (1049)
+.|+|=--|-=|...|-+-|+.+...+.. ....++++++.+.|.|.|.-|...|..+|+.|+...+ +++++.++-
T Consensus 14 mtssDKDfRfMAtsDLm~eLqkdsi~Ld~--dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvk---e~~le~~ve 88 (1233)
T KOG1824|consen 14 MTSSDKDFRFMATSDLMTELQKDSIKLDD--DSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVK---EDQLETIVE 88 (1233)
T ss_pred ccCCCcchhhhhHHHHHHHHHhhhhhccc--cchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhch---HHHHHHHHH
Confidence 44444444555666665555554332221 2346899999999999999999999999999996665 788888888
Q ss_pred HHHHHhcCCchhhhHHHHHHHHHHHhhcCC-------cchHHHHH----HhhccCC-CHHHHHHHHHHHHHHhhhhccCC
Q 001582 511 HVFSRLIDPKELVRQPCSTTLDIVSKTYSV-------DSLLPALL----RSLDEQR-SPKAKLAVIEFAISSLNKHAMNS 578 (1049)
Q Consensus 511 ~ll~klgD~k~~vR~~a~~~L~~~~e~~~~-------d~~l~~L~----r~l~~~~-~pkvk~~~L~~l~~~l~~~~~~~ 578 (1049)
.|..+|--.|++.|.-..-+|..+...++| ..+++.+. .++..+. .--+|.++|+-+...+.+| |.
T Consensus 89 ~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~--g~ 166 (1233)
T KOG1824|consen 89 NLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF--GT 166 (1233)
T ss_pred HHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh--cc
Confidence 888888667889999777777776666554 22222222 2222221 2349999999999888775 21
Q ss_pred CCCCChhhHHHHHHhH-ccccCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCHHHHHHHHHHHhhhchhHHHHHHH
Q 001582 579 EGSGNLGILKLWLAKL-TPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMN 657 (1049)
Q Consensus 579 ~~~~~~~~~~~~l~~l-~~~~~Dkn~~VR~aA~~~L~~ly~h~~~~~~~~~l~~L~~~~~~~~~~aL~~~~p~~~~~l~~ 657 (1049)
+- .+....+.+. .+-++-.-..|||.|+.+|..+-...+ ..-+.-+...|
T Consensus 167 --ll--~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~------------~~ly~~li~~L------------- 217 (1233)
T KOG1824|consen 167 --LL--PNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN------------RDLYVELIEHL------------- 217 (1233)
T ss_pred --cC--cchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC------------HHHHHHHHHHH-------------
Confidence 11 1123333333 333445667999999999987764322 22222221111
Q ss_pred HHHhhhhhhccCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCchhhhhhh
Q 001582 658 YLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENL 737 (1049)
Q Consensus 658 ~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~e~~ 737 (1049)
++.-.++ ++ ++ .. ++ .
T Consensus 218 -l~~L~~~-------~q------~~-~~-----rt--------------------------------------------~ 233 (1233)
T KOG1824|consen 218 -LKGLSNR-------TQ------MS-AT-----RT--------------------------------------------Y 233 (1233)
T ss_pred -HhccCCC-------Cc------hH-HH-----HH--------------------------------------------H
Confidence 1110000 00 00 00 00 0
Q ss_pred hhccccCCCccCCcccccCCCCCCCcCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCCCCCC
Q 001582 738 YQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPS 817 (1049)
Q Consensus 738 ~q~~~~~~~~~~~~~~~d~~~~~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1049)
+|-.... -+. .+.+|. .|.+.
T Consensus 234 Iq~l~~i--------~r~--------------------------ag~r~~-------------------------~h~~~ 254 (1233)
T KOG1824|consen 234 IQCLAAI--------CRQ--------------------------AGHRFG-------------------------SHLDK 254 (1233)
T ss_pred HHHHHHH--------HHH--------------------------hcchhh-------------------------cccch
Confidence 0100000 000 000000 00000
Q ss_pred -HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHh-------------------cC-----
Q 001582 818 -IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVL-------------------DD----- 872 (1049)
Q Consensus 818 -I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L-------------------~D----- 872 (1049)
++-+.+-....++.+-|-|..-|+.+..++.....+. ..+...|+..++..+ +|
T Consensus 255 ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei-~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde 333 (1233)
T KOG1824|consen 255 IVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEI-LPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDE 333 (1233)
T ss_pred hhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhh-cccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccch
Confidence 1111111111112223456666777777765543222 112333444444443 10
Q ss_pred --------CC--HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCch------
Q 001582 873 --------AD--SSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF------ 936 (1049)
Q Consensus 873 --------~n--~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~------ 936 (1049)
.+ ..||.+|.++|..+.......+..|...+-|.+|..+++..+.|+...-.+...+..++++.
T Consensus 334 ~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d 413 (1233)
T KOG1824|consen 334 QDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLAD 413 (1233)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccC
Confidence 11 34999999999999977667777888889999999999999999999999998888776542
Q ss_pred ---------------------hhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCH--
Q 001582 937 ---------------------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSA-- 993 (1049)
Q Consensus 937 ---------------------~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~s-- 993 (1049)
.++++|-+.++++..+++..|+.+|+.++..+ ++.+.++++.++|++.-.++|.++
T Consensus 414 ~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~l-p~~l~~~~~slvpgI~~~l~DkSsss 492 (1233)
T KOG1824|consen 414 NDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVL-PGALAQHIPSLVPGIIYSLNDKSSSS 492 (1233)
T ss_pred chhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhC-cchhhhcccccchhhhhhcCCccchH
Confidence 24555566666677889999999999999877 588899999999999999999544
Q ss_pred HHHHHHHHHHHHHHHHhh----hhHHHhhhcCChhhH
Q 001582 994 DVRKTVVFCLVDIYIMLG----KAFLPYLERLNSTQL 1026 (1049)
Q Consensus 994 eVRKaAv~clv~l~~~lG----e~l~p~l~~L~~s~~ 1026 (1049)
-.++.+. +-+|.+++ +.|.||++.|++--.
T Consensus 493 ~~ki~~L---~fl~~~L~s~~p~~fhp~~~~Ls~~v~ 526 (1233)
T KOG1824|consen 493 NLKIDAL---VFLYSALISHPPEVFHPHLSALSPPVV 526 (1233)
T ss_pred HHHHHHH---HHHHHHHhcCChhhcccchhhhhhHHH
Confidence 3444443 33344443 579999988876443
No 11
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=9.7e-09 Score=111.35 Aligned_cols=199 Identities=20% Similarity=0.258 Sum_probs=154.5
Q ss_pred CCCCCCCCCCCHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001582 411 EMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTL 490 (1049)
Q Consensus 411 ~~~~~~~~~~~l~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL 490 (1049)
++..+.++.+.|.++|. .+.|.||....+||..|..+...+.+.+. +.|.+++-.+.+-++++++.|..++.-|+
T Consensus 79 ~l~~fd~p~~al~~~l~--~L~s~dW~~~vdgLn~irrLs~fh~e~l~---~~L~~vii~vvkslKNlRS~VsraA~~t~ 153 (334)
T KOG2933|consen 79 NLSPFDDPEAALKQALK--KLSSDDWEDKVDGLNSIRRLSEFHPESLN---PMLHEVIIAVVKSLKNLRSAVSRAACMTL 153 (334)
T ss_pred ccCccCcHHHHHHHHHH--HhchHHHHHHhhhHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 35556667778999999 79999999999999999999998887554 78999999999999999999999999999
Q ss_pred HHHHHhcCcchHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 001582 491 ADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISS 570 (1049)
Q Consensus 491 ~~l~~~~~~~~~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~ 570 (1049)
+++++.+++.+.+-++.++..|+.|-++.|-+||+.|.++|.++.....+..+++.|.-++. +.||.++.-..-.....
T Consensus 154 ~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~-~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 154 ADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQ-HSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHh-hhchhhhhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999987643 56777666332222111
Q ss_pred hhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHH
Q 001582 571 LNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYT 618 (1049)
Q Consensus 571 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~ 618 (1049)
..+..+.+- .-...+..+..+..-+.|+=+++|++|...+..+..
T Consensus 233 v~rl~v~~~---~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~ 277 (334)
T KOG2933|consen 233 VIRLGVLPV---LLQGSCDLSRAAQEQGSDKLPELREAARFVRLELKE 277 (334)
T ss_pred ceeccccch---hhHhHHHHHHHHHhhhcccccccccchhHHHHhHHH
Confidence 111100000 000122223333334567778889888877766553
No 12
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=7.9e-07 Score=104.10 Aligned_cols=400 Identities=18% Similarity=0.290 Sum_probs=254.1
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH--hcCcchHHHHHH
Q 001582 430 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIP--SCRKPFESYMER 507 (1049)
Q Consensus 430 ~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~--~~~~~~~~~l~~ 507 (1049)
+..+.+=..||---..|.-+|+-... .+.++|+.+++-...+-.|.|-.|+--|.|-.-.|+. .++..+.+||..
T Consensus 223 lanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~k 299 (885)
T KOG2023|consen 223 LANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDK 299 (885)
T ss_pred HccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Confidence 45788899999988888888876544 3448999999999999999999997777777777773 456678999999
Q ss_pred HHHHHHHHhc--CC----ch--------------------------------------------------hhhHHHHHHH
Q 001582 508 ILPHVFSRLI--DP----KE--------------------------------------------------LVRQPCSTTL 531 (1049)
Q Consensus 508 lL~~ll~klg--D~----k~--------------------------------------------------~vR~~a~~~L 531 (1049)
++|.|+.+|. |. ++ .+|....++|
T Consensus 300 liPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaL 379 (885)
T KOG2023|consen 300 LIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAAL 379 (885)
T ss_pred HHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHH
Confidence 9999999983 31 11 3677778999
Q ss_pred HHHHhhcCCcchHHHHHHhhccC---CCHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHH
Q 001582 532 DIVSKTYSVDSLLPALLRSLDEQ---RSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEA 608 (1049)
Q Consensus 532 ~~~~e~~~~d~~l~~L~r~l~~~---~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~Dkn~~VR~a 608 (1049)
+++...|+-+ +++.++-++.++ .++++|.+..--+ -++++-.|+. +. ..+-..++.++.++.||.+-||+-
T Consensus 380 DVLanvf~~e-lL~~l~PlLk~~L~~~~W~vrEagvLAl-GAIAEGcM~g--~~--p~LpeLip~l~~~L~DKkplVRsI 453 (885)
T KOG2023|consen 380 DVLANVFGDE-LLPILLPLLKEHLSSEEWKVREAGVLAL-GAIAEGCMQG--FV--PHLPELIPFLLSLLDDKKPLVRSI 453 (885)
T ss_pred HHHHHhhHHH-HHHHHHHHHHHHcCcchhhhhhhhHHHH-HHHHHHHhhh--cc--cchHHHHHHHHHHhccCccceeee
Confidence 9999888754 578888888764 5789999865444 3566544431 21 345566777777888888777776
Q ss_pred HHHHHHHHHHhcCchhHHHHhhcCCH-HHHHHHHHHHhhhchhHHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccc
Q 001582 609 AITCIISVYTHYDSTAVLNFILSLSV-EEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYA 687 (1049)
Q Consensus 609 A~~~L~~ly~h~~~~~~~~~l~~L~~-~~~~~~~~aL~~~~p~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~ 687 (1049)
.+=.|.-.-.+ +.+.+. .+|..
T Consensus 454 TCWTLsRys~w---------v~~~~~~~~f~p------------------------------------------------ 476 (885)
T KOG2023|consen 454 TCWTLSRYSKW---------VVQDSRDEYFKP------------------------------------------------ 476 (885)
T ss_pred eeeeHhhhhhh---------HhcCChHhhhHH------------------------------------------------
Confidence 55433221111 001111 11110
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCchhhhhhhhhccccCCCccCCcccccCCCCCCCcCCCC
Q 001582 688 VASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFS 767 (1049)
Q Consensus 688 ~~~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~e~~~q~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 767 (1049)
T Consensus 477 -------------------------------------------------------------------------------- 476 (885)
T KOG2023|consen 477 -------------------------------------------------------------------------------- 476 (885)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCCCCCCHHHHHHHhccCCCCChhHHHHHHHHHHHHH
Q 001582 768 TPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKAS 847 (1049)
Q Consensus 768 ~Pr~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~lL~~l~~~~~~~~~eR~~aL~~L~~li 847 (1049)
.+..+|..+-|.|++ ...+|...+..+.
T Consensus 477 -------------------------------------------------vL~~ll~~llD~NK~---VQEAAcsAfAtle 504 (885)
T KOG2023|consen 477 -------------------------------------------------VLEGLLRRLLDSNKK---VQEAACSAFATLE 504 (885)
T ss_pred -------------------------------------------------HHHHHHHHHhcccHH---HHHHHHHHHHHHH
Confidence 123344444444321 3333444433333
Q ss_pred hcCCccchHHhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHHHHh---CCCcHHHH
Q 001582 848 VANDHSIWTKYFNQILTAVLEVLDD---ADSSVREVALSLINEMLKNQKDVME--DSVEIVIEKLLHVT---KDAVPKVS 919 (1049)
Q Consensus 848 ~~~~~~~w~~~f~~lL~~Ll~~L~D---~n~~vr~~AL~~L~~L~~~~~~~~~--~~~e~lLp~Ll~~~---~Ds~~~Vr 919 (1049)
.+.+.+. -.++..||..|...+.- +|--+. ...++.++...++.+. .|+++++|.|+++- .|+.|++-
T Consensus 505 E~A~~eL-Vp~l~~IL~~l~~af~kYQ~KNLlIL---YDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLf 580 (885)
T KOG2023|consen 505 EEAGEEL-VPYLEYILDQLVFAFGKYQKKNLLIL---YDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLF 580 (885)
T ss_pred Hhccchh-HHHHHHHHHHHHHHHHHHhhcceehH---HHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHH
Confidence 2222222 23666666666666543 333222 4556666776677665 78999999999754 67655543
Q ss_pred HHHHHHHHHHHhhc----Cc------hhhHHhhhhhhc---c-cc--------hhHHHHHHHHHHHHHhhcCHHH--HHh
Q 001582 920 NEAEHCLTVVLSQY----DP------FRCLSVIVPLLV---T-ED--------EKTLVTCINCLTKLVGRLSQEE--LMA 975 (1049)
Q Consensus 920 ~aA~~~l~~i~~~~----~p------~~~l~vL~p~l~---s-~~--------~~t~~~al~~L~~lie~~~~~~--l~~ 975 (1049)
-..+|+..|+..+ -| .+|+.+|...++ . .. ..-.+++++++.-|++.+|... |..
T Consensus 581 -PLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva 659 (885)
T KOG2023|consen 581 -PLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVA 659 (885)
T ss_pred -HHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhh
Confidence 3456776666553 22 257777653221 1 11 1123578999999998886432 211
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-------hHHHhh-hcCChhhHHHHHHHH
Q 001582 976 QLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-------AFLPYL-ERLNSTQLRLVTIYA 1033 (1049)
Q Consensus 976 ~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe-------~l~p~l-~~L~~s~~kLL~~yi 1033 (1049)
-..++.-+.+|+.|.-+|||..|...|..+...+.+ +|.|.+ .+|++......+.-+
T Consensus 660 -~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~ 724 (885)
T KOG2023|consen 660 -QSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAI 724 (885)
T ss_pred -hccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHH
Confidence 134778899999999999999999999999888654 445544 467766655544433
No 13
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=1.7e-06 Score=101.42 Aligned_cols=418 Identities=16% Similarity=0.195 Sum_probs=240.7
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHH------hhcCCcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhc
Q 001582 502 ESYMERILPHVFSRLIDPKELVRQPCSTTLDIVS------KTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHA 575 (1049)
Q Consensus 502 ~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~------e~~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~ 575 (1049)
..-+..++|++|.-.....+.+|..|..|++.+. -.+..|..+..|+.... -.+|.||..++.-++-.| +.
T Consensus 169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalan-D~~~eVRk~vC~alv~Ll-ev- 245 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALAN-DEDPEVRKNVCRALVFLL-EV- 245 (885)
T ss_pred cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHH-Hh-
Confidence 4568899999999998888899999999999875 13556666666664332 257999999988776433 32
Q ss_pred cCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCHHHHHHHHHHHhhhchhHHHHH
Q 001582 576 MNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDL 655 (1049)
Q Consensus 576 ~~~~~~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~h~~~~~~~~~l~~L~~~~~~~~~~aL~~~~p~~~~~l 655 (1049)
-++.. -.++...+.-++..++|.+.+|-=-|++.+.++-..- +++ +++...|++..|-
T Consensus 246 -r~dkl--~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp-----------i~~---~~L~p~l~kliPv----- 303 (885)
T KOG2023|consen 246 -RPDKL--VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP-----------ICK---EVLQPYLDKLIPV----- 303 (885)
T ss_pred -cHHhc--ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc-----------CcH---HHHHHHHHHHHHH-----
Confidence 22221 2467788888888999999999999999998875320 111 2222233222221
Q ss_pred HHHHHhhhhhhccCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCchhhhh
Q 001582 656 MNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKE 735 (1049)
Q Consensus 656 ~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~e 735 (1049)
|-+++. +...+ . .+. + +. .+++ +-+.+|
T Consensus 304 ---Ll~~M~-------Ysd~D--------~-~LL-~-~~-----------eeD~--------------------~vpDre 331 (885)
T KOG2023|consen 304 ---LLSGMV-------YSDDD--------I-ILL-K-NN-----------EEDE--------------------SVPDRE 331 (885)
T ss_pred ---HHccCc-------ccccc--------H-HHh-c-Cc-----------cccc--------------------cCCchh
Confidence 111110 00000 0 000 0 00 0000 001111
Q ss_pred hhhhccccCCCccCCcccccCCCCCCCcCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCc-------cccc
Q 001582 736 NLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPS-------AIKT 808 (1049)
Q Consensus 736 ~~~q~~~~~~~~~~~~~~~d~~~~~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-------~~~~ 808 (1049)
+.+ +++|. |.+ .-.. .+.. .+..+- -..+.+| -..++++.. .|..
T Consensus 332 eDI-kPRfh-------ksk---~~~~--~~~~---~~eDdd------dDe~DDd------D~~~dWNLRkCSAAaLDVLa 383 (885)
T KOG2023|consen 332 EDI-KPRFH-------KSK---EHGN--GEDA---DDEDDD------DDEDDDD------DAFSDWNLRKCSAAALDVLA 383 (885)
T ss_pred hhc-cchhh-------hch---hccC--cccc---cccccc------ccccccc------cccccccHhhccHHHHHHHH
Confidence 101 01111 000 0000 0000 000000 0001100 001111111 1111
Q ss_pred CCcCCCCCCHHHHHHHhccC-CCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001582 809 NSLTDAGPSIPQILHLMCNG-NDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINE 887 (1049)
Q Consensus 809 ~~~~~~~~~I~~lL~~l~~~-~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~ 887 (1049)
+-+++ +.++.++-.|..+ ....|..|.++.-.|..+... ......+|+..|..-|+..|.|+.+-||..+|=+|..
T Consensus 384 nvf~~--elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEG-cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsR 460 (885)
T KOG2023|consen 384 NVFGD--ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEG-CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSR 460 (885)
T ss_pred HhhHH--HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHH-HhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhh
Confidence 22222 2223333333221 112399999999998887744 3344456888899999999999999999988888876
Q ss_pred HHHhhh-hhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcc-----cchhHH--HHHHH
Q 001582 888 MLKNQK-DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVT-----EDEKTL--VTCIN 959 (1049)
Q Consensus 888 L~~~~~-~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s-----~~~~t~--~~al~ 959 (1049)
-.+..- ..-..|+..++..|+..+-|++|.|.++|-.+..++.+...+ .+++++-+++++ ++|+.+ +--.+
T Consensus 461 ys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~-eLVp~l~~IL~~l~~af~kYQ~KNLlILYD 539 (885)
T KOG2023|consen 461 YSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE-ELVPYLEYILDQLVFAFGKYQKKNLLILYD 539 (885)
T ss_pred hhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHhhcceehHHH
Confidence 554221 113467888899999999999999999999999999887655 355666666654 344432 22235
Q ss_pred HHHHHHhhcCHHHH--HhhhhhHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHH
Q 001582 960 CLTKLVGRLSQEEL--MAQLPSFLPALFEA---FGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVT 1030 (1049)
Q Consensus 960 ~L~~lie~~~~~~l--~~~L~~iip~L~~~---~~D~~seVRKaAv~clv~l~~~lGe~l~p~l~~L~~s~~kLL~ 1030 (1049)
.++.+.+..| +.| -.++..+||.|++- +.|.|.++=- -..|+..+-..+|+.|.||....-.--.++|+
T Consensus 540 AIgtlAdsvg-~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfP-LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~ 613 (885)
T KOG2023|consen 540 AIGTLADSVG-HALNKPAYIQILMPPLIEKWELLSDSDKDLFP-LLECLSSIASALGVGFLPYAQPVYQRCFRILQ 613 (885)
T ss_pred HHHHHHHHHH-HhcCcHHHHHHhccHHHHHHHhcCcccchHHH-HHHHHHHHHHHHhccccccCHHHHHHHHHHHH
Confidence 5555555443 222 12466778888764 4578877753 57899999999999999998766666667776
No 14
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=1.6e-07 Score=102.14 Aligned_cols=192 Identities=16% Similarity=0.279 Sum_probs=162.2
Q ss_pred CCHHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhh
Q 001582 816 PSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV 895 (1049)
Q Consensus 816 ~~I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~ 895 (1049)
..+.+.|..|++.+ |+...++|..|..++.-+. +.....+..+...+++-+++.++.|-..|+.++..|+..+...
T Consensus 88 ~al~~~l~~L~s~d---W~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~ 163 (334)
T KOG2933|consen 88 AALKQALKKLSSDD---WEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS 163 (334)
T ss_pred HHHHHHHHHhchHH---HHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888887664 9999999999998876554 5556678888889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHH-H
Q 001582 896 MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEEL-M 974 (1049)
Q Consensus 896 ~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l-~ 974 (1049)
+...++.++..|+....+.+.-|+++|+.+|.+++.+..|.+++..|.|+++..+..++.-+..+.-..+.+++-..+ .
T Consensus 164 i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~ 243 (334)
T KOG2933|consen 164 IDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL 243 (334)
T ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence 888999999999999999999999999999999999999999999999999888777777666666666767763333 3
Q ss_pred hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001582 975 AQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1011 (1049)
Q Consensus 975 ~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lG 1011 (1049)
....++.+.+.+...|.-+++|++|.+.+.....++.
T Consensus 244 ~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~~ 280 (334)
T KOG2933|consen 244 QGSCDLSRAAQEQGSDKLPELREAARFVRLELKEVLK 280 (334)
T ss_pred HhHHHHHHHHHhhhcccccccccchhHHHHhHHHHHH
Confidence 3445777889999999999999999999887776664
No 15
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.70 E-value=1.1e-05 Score=97.80 Aligned_cols=147 Identities=16% Similarity=0.230 Sum_probs=94.6
Q ss_pred HHHHHHHHhhCCCcHH------HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhhcC
Q 001582 466 KVMKLFFQHLDDPHHK------VAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYS 539 (1049)
Q Consensus 466 ~l~~~l~~~l~Dsn~k------V~~~aL~tL~~l~~~~~~~~~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~ 539 (1049)
-+|..|+..|.+.+.+ |-.-+||++++....+|.-+-.+=..++..++-.++-....||.++..+|..+.-+++
T Consensus 127 tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 127 TVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence 3555666666666666 6778899999999999976665556667777777888889999999999999998888
Q ss_pred CcchHHHHHHhhccC----CCHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhHcccc---CCCCHHHHHHHHHH
Q 001582 540 VDSLLPALLRSLDEQ----RSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLV---HDKNTKLKEAAITC 612 (1049)
Q Consensus 540 ~d~~l~~L~r~l~~~----~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~---~Dkn~~VR~aA~~~ 612 (1049)
.+.....+-..+.+- ++..+|.-+ ..|. .+.. +.| -.|+ ..+...++-++..+ +...-|+|++..++
T Consensus 207 ~~ly~~li~~Ll~~L~~~~q~~~~rt~I-q~l~-~i~r-~ag-~r~~--~h~~~ivp~v~~y~~~~e~~dDELrE~~lQa 280 (1233)
T KOG1824|consen 207 RDLYVELIEHLLKGLSNRTQMSATRTYI-QCLA-AICR-QAG-HRFG--SHLDKIVPLVADYCNKIEEDDDELREYCLQA 280 (1233)
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHH-HHHH-HHHH-Hhc-chhh--cccchhhHHHHHHhcccccCcHHHHHHHHHH
Confidence 776444444333332 223444422 3332 2332 122 1222 23444445555544 55677999999999
Q ss_pred HHHHHH
Q 001582 613 IISVYT 618 (1049)
Q Consensus 613 L~~ly~ 618 (1049)
|.++.+
T Consensus 281 le~fl~ 286 (1233)
T KOG1824|consen 281 LESFLR 286 (1233)
T ss_pred HHHHHH
Confidence 987554
No 16
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=1.2e-05 Score=93.31 Aligned_cols=176 Identities=16% Similarity=0.202 Sum_probs=124.8
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Q 001582 430 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLD-DPHHKVAQAALSTLADIIPSCRKPFESYMERI 508 (1049)
Q Consensus 430 ~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~-Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~l 508 (1049)
.+.++-+..||.|-..|++++++--..-+ ...+.++++.+.+.++ -+|.+--..+|--+...+.+.|.+-.+|+..+
T Consensus 8 ~ltdKlYekRKaaalelEk~Vk~l~~~~~--~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~i 85 (675)
T KOG0212|consen 8 GLTDKLYEKRKAAALELEKLVKDLVNNND--YDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKI 85 (675)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHccCc--HHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHh
Confidence 45788899999999999998875322111 1367888887766553 45554444777777778888888877899999
Q ss_pred HHHHHHHhcCCchhhhHHHHHHHHHHHhhcC------CcchHHHHHHhhccC-CCHHHHHHHHHHHHHHhhhhccCCC-C
Q 001582 509 LPHVFSRLIDPKELVRQPCSTTLDIVSKTYS------VDSLLPALLRSLDEQ-RSPKAKLAVIEFAISSLNKHAMNSE-G 580 (1049)
Q Consensus 509 L~~ll~klgD~k~~vR~~a~~~L~~~~e~~~------~d~~l~~L~r~l~~~-~~pkvk~~~L~~l~~~l~~~~~~~~-~ 580 (1049)
+|.++.+++|..-.||--|.+.|--++..+. .+.+|++|.+...|. +|-+.-.++|.-+...+.. ..+ .
T Consensus 86 v~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVt---e~~~t 162 (675)
T KOG0212|consen 86 VPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVT---ESAST 162 (675)
T ss_pred hHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcc---ccccc
Confidence 9999999999999999999999998885433 356788888877665 6767777788777666543 211 2
Q ss_pred CCChhhHHHHHHhHccccC----CCCHHHHHHHHHHHHHHHH
Q 001582 581 SGNLGILKLWLAKLTPLVH----DKNTKLKEAAITCIISVYT 618 (1049)
Q Consensus 581 ~~~~~~~~~~l~~l~~~~~----Dkn~~VR~aA~~~L~~ly~ 618 (1049)
| . ++.+++++. +.|+.+|..-..-|-.|+.
T Consensus 163 F----s----L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds 196 (675)
T KOG0212|consen 163 F----S----LPEFIPLLRERIYVINPMTRQFLVSWLYVLDS 196 (675)
T ss_pred c----C----HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc
Confidence 2 2 344555444 4789988775555555543
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.66 E-value=3.5e-06 Score=108.65 Aligned_cols=118 Identities=20% Similarity=0.274 Sum_probs=89.0
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhhcCCcchHHHHH
Q 001582 469 KLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALL 548 (1049)
Q Consensus 469 ~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~ 548 (1049)
+.|..+|.|++..|=..++++|+.+- -...++.|...|.|....||..|.++|..+.+..+.. ++|.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~---~~L~ 690 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA---PALR 690 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch---HHHH
Confidence 45667778999999999999999763 2446788888889999999999999998887766553 4555
Q ss_pred HhhccCCCHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHH
Q 001582 549 RSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISV 616 (1049)
Q Consensus 549 r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~l 616 (1049)
..+. ..+|.||.+++++|.. +. .+ .. ..++.++.|+++.||.+|...|..+
T Consensus 691 ~~L~-~~d~~VR~~A~~aL~~-~~---~~--------~~----~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 691 DHLG-SPDPVVRAAALDVLRA-LR---AG--------DA----ALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred HHhc-CCCHHHHHHHHHHHHh-hc---cC--------CH----HHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 5554 3789999999988753 31 11 11 2345688999999999998877753
No 18
>PTZ00429 beta-adaptin; Provisional
Probab=98.62 E-value=0.0003 Score=87.96 Aligned_cols=474 Identities=12% Similarity=0.081 Sum_probs=253.3
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcch
Q 001582 422 LSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPF 501 (1049)
Q Consensus 422 l~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~ 501 (1049)
+.|+-. .+.+.+=.+|++||..|-.++..|... ..++--..+.+.-.|..+=.+..-.|..+ .+.-
T Consensus 34 ~~ELr~--~L~s~~~~~kk~alKkvIa~mt~G~Dv--------S~LF~dVvk~~~S~d~elKKLvYLYL~~y----a~~~ 99 (746)
T PTZ00429 34 GAELQN--DLNGTDSYRKKAAVKRIIANMTMGRDV--------SYLFVDVVKLAPSTDLELKKLVYLYVLST----ARLQ 99 (746)
T ss_pred HHHHHH--HHHCCCHHHHHHHHHHHHHHHHCCCCc--------hHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cccC
Confidence 455555 456777788999999998888777642 22333333344555655444443333333 2223
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCCC
Q 001582 502 ESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGS 581 (1049)
Q Consensus 502 ~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~~ 581 (1049)
.+.+-..+..+.+-+.|..+.||..|..+|..++..-=.+.++..|.+.+.+ .+|-||..++-.+... |...++..
T Consensus 100 pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D-~~pYVRKtAalai~Kl---y~~~pelv 175 (746)
T PTZ00429 100 PEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVAD-PDPYVRKTAAMGLGKL---FHDDMQLF 175 (746)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHH---HhhCcccc
Confidence 4446666778888889999999999999999887644445566666666653 7899999888777643 33343321
Q ss_pred CChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCHHHHHHHHHHHhhhchhHHHHHHHHHHh
Q 001582 582 GNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQS 661 (1049)
Q Consensus 582 ~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~h~~~~~~~~~l~~L~~~~~~~~~~aL~~~~p~~~~~l~~~l~~ 661 (1049)
.-..|+..+..++.|+|+.|...|..+|..|-.+.+ .. +. +....+..+...|++..+-.+..+...|..
T Consensus 176 ----~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~-~~-l~----l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 176 ----YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGS-EK-IE----SSNEWVNRLVYHLPECNEWGQLYILELLAA 245 (746)
T ss_pred ----cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCc-hh-hH----HHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Confidence 123467788888999999999999999999975432 11 11 112222223333333332233333333311
Q ss_pred hhhhhccCCCCCCCCCCCCCCccc-ccccccCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCchhhhhhhhhc
Q 001582 662 KKERQRLKSSYDPSDVVGTSSEEG-YAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQN 740 (1049)
Q Consensus 662 ~~~~~~~~s~~~~~~~~~~~s~~~-~~~~~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~e~~~q~ 740 (1049)
. . |.+.. -.... ....+.-.+. ++ + ..-++................+....+
T Consensus 246 y--~--------P~~~~--e~~~il~~l~~~Lq~~----N~-A----------VVl~Aik~il~l~~~~~~~~~~~~~~r 298 (746)
T PTZ00429 246 Q--R--------PSDKE--SAETLLTRVLPRMSHQ----NP-A----------VVMGAIKVVANLASRCSQELIERCTVR 298 (746)
T ss_pred c--C--------CCCcH--HHHHHHHHHHHHhcCC----CH-H----------HHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 0 0 00000 00000 0000000000 00 0 000000000000000000000000000
Q ss_pred cccCCCccCCcccccCCCCCCCcCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCCCCCCHHH
Q 001582 741 FETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQ 820 (1049)
Q Consensus 741 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 820 (1049)
... ..- .. ....|...+.++. ++. .+- .. +...+..
T Consensus 299 l~~-----------pLv--~L---~ss~~eiqyvaLr-~I~-----------------------~i~-~~---~P~lf~~ 334 (746)
T PTZ00429 299 VNT-----------ALL--TL---SRRDAETQYIVCK-NIH-----------------------ALL-VI---FPNLLRT 334 (746)
T ss_pred HHH-----------HHH--Hh---hCCCccHHHHHHH-HHH-----------------------HHH-HH---CHHHHHH
Confidence 000 000 00 0000111111110 000 000 00 0000111
Q ss_pred HHHHh-ccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHH
Q 001582 821 ILHLM-CNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS 899 (1049)
Q Consensus 821 lL~~l-~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~ 899 (1049)
-++.+ .--++. ..-|...|+-|..++.+ +|...|+..|.+.+.|.+...+..+++.|..++... ...
T Consensus 335 ~~~~Ff~~~~Dp-~yIK~~KLeIL~~Lane-------~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~----~~~ 402 (746)
T PTZ00429 335 NLDSFYVRYSDP-PFVKLEKLRLLLKLVTP-------SVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV----DSV 402 (746)
T ss_pred HHHhhhcccCCc-HHHHHHHHHHHHHHcCc-------ccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC----hHH
Confidence 12222 111222 34678888877776643 467788999999999999999999999999988644 445
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhc--c-cchhHHHHHHHHHHHHHhhcCHHHHHhh
Q 001582 900 VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV--T-EDEKTLVTCINCLTKLVGRLSQEELMAQ 976 (1049)
Q Consensus 900 ~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~--s-~~~~t~~~al~~L~~lie~~~~~~l~~~ 976 (1049)
++.++..|++.+.+.... ...+..+++.|+..+|-..++..|+..+. . .+...+...+.+++...+.+. .
T Consensus 403 a~~cV~~Ll~ll~~~~~~-v~e~i~vik~IlrkyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~------~ 475 (746)
T PTZ00429 403 APDCANLLLQIVDRRPEL-LPQVVTAAKDIVRKYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIE------N 475 (746)
T ss_pred HHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHh------h
Confidence 666677777777665444 44567888888888876555555554331 1 344566666788877655431 2
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh
Q 001582 977 LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKA 1013 (1049)
Q Consensus 977 L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~ 1013 (1049)
.+.++..++..+.+..++||-+.+.+++.+|...+++
T Consensus 476 a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~ 512 (746)
T PTZ00429 476 GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG 512 (746)
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH
Confidence 3566667778888899999999999999999888753
No 19
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=4e-05 Score=97.32 Aligned_cols=385 Identities=18% Similarity=0.241 Sum_probs=248.3
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 001582 432 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPH 511 (1049)
Q Consensus 432 ~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~~ 511 (1049)
-++-|.-|+-|--++..|.+++...++ |.+++|+.-|.++=-||+.||....-++-..|++.-+.-.+.|+..++-.
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl~---p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~e 1043 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKLE---PYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDE 1043 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhhh---hHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 467799999999999999998765444 89999999999988899999999999999999999999999999999999
Q ss_pred HHHHhcCCchhhhHHHHHHHHHHHhhcCCcc-------hHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCCCCCh
Q 001582 512 VFSRLIDPKELVRQPCSTTLDIVSKTYSVDS-------LLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNL 584 (1049)
Q Consensus 512 ll~klgD~k~~vR~~a~~~L~~~~e~~~~d~-------~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~ 584 (1049)
|+..|++.-=-||+++--||.-+...-+.|+ +..+++|.++|-+ --||.+.=.++ ..|.+..+...+..++
T Consensus 1044 LL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIK-EsVR~aa~~~~-~~lsKl~vr~~d~~~~ 1121 (1702)
T KOG0915|consen 1044 LLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIK-ESVREAADKAA-RALSKLCVRICDVTNG 1121 (1702)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHhhhcccCCc
Confidence 9999999888899998888777765555554 3445667677643 12444432222 2333322322233444
Q ss_pred hhHHHHHHhHccccCC-----CCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCHHHHHHHHHHHhhhchhHHHHHHHHH
Q 001582 585 GILKLWLAKLTPLVHD-----KNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYL 659 (1049)
Q Consensus 585 ~~~~~~l~~l~~~~~D-----kn~~VR~aA~~~L~~ly~h~~~~~~~~~l~~L~~~~~~~~~~aL~~~~p~~~~~l~~~l 659 (1049)
..-+.++.-+.+++-| +-.+||+.++..|+-|-.+.|.. | ++++..+.-+|-..+..++..+.+|+
T Consensus 1122 ~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~--------l-kP~~~~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1122 AKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKE--------L-KPHFPKLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred ccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhh--------h-cchhhHHHHHHHHHccccchHHHHHH
Confidence 4556667777776555 56899999999999998887631 1 11112222222111222222222222
Q ss_pred HhhhhhhccCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCchhhhhhhhh
Q 001582 660 QSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQ 739 (1049)
Q Consensus 660 ~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~e~~~q 739 (1049)
.-... +...| ..+
T Consensus 1193 s~r~~------------------------------------------------------------------~~e~e-alD 1205 (1702)
T KOG0915|consen 1193 SLRLI------------------------------------------------------------------NIETE-ALD 1205 (1702)
T ss_pred HHhhh------------------------------------------------------------------hhHHH-HHH
Confidence 11000 00000 000
Q ss_pred ccccCCCccCCcccccCCCCCCCcCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCCCCCCHH
Q 001582 740 NFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIP 819 (1049)
Q Consensus 740 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 819 (1049)
+.+... .+ +.|- + +.|.
T Consensus 1206 t~R~s~----------ak---------sspm------------------------------------m--------eTi~ 1222 (1702)
T KOG0915|consen 1206 TLRASA----------AK---------SSPM------------------------------------M--------ETIN 1222 (1702)
T ss_pred HHHHhh----------hc---------CCcH------------------------------------H--------HHHH
Confidence 000000 00 0000 0 0022
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhhhhhhHH
Q 001582 820 QILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDVMED 898 (1049)
Q Consensus 820 ~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~-n~~vr~~AL~~L~~L~~~~~~~~~~ 898 (1049)
.++..+ + ...+.++.+.+.+.+... +...+..+-.++..|...++..+.|
T Consensus 1223 ~ci~~i-------------------------D----~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP 1273 (1702)
T KOG0915|consen 1223 KCINYI-------------------------D----ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP 1273 (1702)
T ss_pred HHHHhh-------------------------h----HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc
Confidence 222211 1 123444556666666542 3345667778888888889999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhc----ccchhHHHHHHHHHHHHHhhcCHHHHH
Q 001582 899 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV----TEDEKTLVTCINCLTKLVGRLSQEELM 974 (1049)
Q Consensus 899 ~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~----s~~~~t~~~al~~L~~lie~~~~~~l~ 974 (1049)
|...++-.++-.++|.+..|+++--.++-.++....|+++.+.+-..+. ..+..- ..++..+-. |..+.++.+.
T Consensus 1274 ~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~-siscatis~-Ian~s~e~Lk 1351 (1702)
T KOG0915|consen 1274 YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLK-SISCATISN-IANYSQEMLK 1351 (1702)
T ss_pred chhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCcc-chhHHHHHH-HHHhhHHHHH
Confidence 9999999999999999999999999999999999999877666544332 222111 222333334 6677789999
Q ss_pred hhhhhHHHHHHHHhcCC
Q 001582 975 AQLPSFLPALFEAFGNQ 991 (1049)
Q Consensus 975 ~~L~~iip~L~~~~~D~ 991 (1049)
.+...|+|.++=++++.
T Consensus 1352 n~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1352 NYASAILPLIFLAMHEE 1368 (1702)
T ss_pred hhHHHHHHHHHHHHhHH
Confidence 99999999998877765
No 20
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.51 E-value=7.1e-06 Score=93.62 Aligned_cols=225 Identities=20% Similarity=0.271 Sum_probs=161.6
Q ss_pred cccCCcCccccccCCCCCCCCCCCCHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhC
Q 001582 397 SRRKSFDDSQLQLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLD 476 (1049)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~l~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~ 476 (1049)
+.+.+|++...... +.-.++..-+.+.|.+ ..++-.-.+|++||..|..++..+..+ -+.+.+++|+..+...|.
T Consensus 265 l~e~~~~~~~~~~~--p~~~~~~~~v~~~l~~-~~g~e~a~~~k~alsel~~m~~e~sfs--vWeq~f~~iL~~l~EvL~ 339 (516)
T KOG2956|consen 265 LEEYSTDDSMDQLT--PNSVDQSALVADLLKE-ISGSERASERKEALSELPKMLCEGSFS--VWEQHFAEILLLLLEVLS 339 (516)
T ss_pred chhhccCcchhhCC--CCCcchhHHHHHHHHh-ccCccchhHHHHHHHHHHHHHHccchh--HHHHHHHHHHHHHHHHHc
Confidence 34445555433222 2233444445666663 445557899999999999999887753 455789999999999999
Q ss_pred C-CcHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhcC-CchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhccC
Q 001582 477 D-PHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLID-PKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ 554 (1049)
Q Consensus 477 D-sn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~~ll~klgD-~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~ 554 (1049)
| .++..-.+||.+|.+....-...|.++....+-.+|+.-.| .++.+|.++..|+.++....|...+..+--.++. .
T Consensus 340 d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt-~ 418 (516)
T KOG2956|consen 340 DSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT-A 418 (516)
T ss_pred cchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc-C
Confidence 9 77777788999999999999999999999999999999976 5668888888888888888887776555433332 2
Q ss_pred CCHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhHcccc----CCCCHHHHHHHHHHHHHHHHhcCchhHHHHhh
Q 001582 555 RSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLV----HDKNTKLKEAAITCIISVYTHYDSTAVLNFIL 630 (1049)
Q Consensus 555 ~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~----~Dkn~~VR~aA~~~L~~ly~h~~~~~~~~~l~ 630 (1049)
.-| .-+++++.+++.+.+ + ...++-..|+-|++++ +-.++.|||.|.=||++||..+|-+.|.-.|.
T Consensus 419 D~~-~~~~~iKm~Tkl~e~--l------~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~ 489 (516)
T KOG2956|consen 419 DEP-RAVAVIKMLTKLFER--L------SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLE 489 (516)
T ss_pred cch-HHHHHHHHHHHHHhh--c------CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhh
Confidence 222 334566667654432 2 2356667777777753 33789999999999999999988655555555
Q ss_pred cCCHHH
Q 001582 631 SLSVEE 636 (1049)
Q Consensus 631 ~L~~~~ 636 (1049)
.|+...
T Consensus 490 ~Lt~sk 495 (516)
T KOG2956|consen 490 QLTSSK 495 (516)
T ss_pred hccHHH
Confidence 555443
No 21
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.48 E-value=0.0005 Score=81.92 Aligned_cols=169 Identities=21% Similarity=0.283 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhc---
Q 001582 858 YFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS-VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY--- 933 (1049)
Q Consensus 858 ~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~-~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~--- 933 (1049)
+.-+|...++..|.++.+.||++|+.++..|+.-+...-+.- +.-+=-.|.+.+|.--++|.-....|++.|+.+.
T Consensus 796 ylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 796 YLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccc
Confidence 455566678888899999999999999999887665432211 2222233457889888999999999999999876
Q ss_pred ---Cc-hhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHH-HhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001582 934 ---DP-FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEEL-MAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1008 (1049)
Q Consensus 934 ---~p-~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l-~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~ 1008 (1049)
+| ..+++-|.|+|+++..+.-.-|+++++.+..+-+ +-+ .+.-..|.=.|.+.+...+.++|.+|++.+.-|-.
T Consensus 876 km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp-E~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP-EYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 44 3599999999999888888899999999886643 322 11223344456666767789999999999999999
Q ss_pred Hhhh-hHH-HhhhcCChhhHH
Q 001582 1009 MLGK-AFL-PYLERLNSTQLR 1027 (1049)
Q Consensus 1009 ~lGe-~l~-p~l~~L~~s~~k 1027 (1049)
.+|. +++ -.|.+|....+.
T Consensus 955 aIGPqdVLatLlnnLkvqeRq 975 (1172)
T KOG0213|consen 955 AIGPQDVLATLLNNLKVQERQ 975 (1172)
T ss_pred hcCHHHHHHHHHhcchHHHHH
Confidence 9996 654 577888765543
No 22
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.0017 Score=78.32 Aligned_cols=443 Identities=14% Similarity=0.206 Sum_probs=257.9
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHH-HHHHHHHhhCCCcHHHHHHHHHHHH-------HHHHhcCcchH-
Q 001582 432 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEK-VMKLFFQHLDDPHHKVAQAALSTLA-------DIIPSCRKPFE- 502 (1049)
Q Consensus 432 ~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~-l~~~l~~~l~Dsn~kV~~~aL~tL~-------~l~~~~~~~~~- 502 (1049)
.+.|=+.|.+||..|-+|..-- .+.+.+-+++ |+.+-...+...|-.|+.+++|--. +|+.-.++.++
T Consensus 227 q~~d~~i~~aa~~ClvkIm~Ly---Y~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~ 303 (859)
T KOG1241|consen 227 QSPDEEIQVAAFQCLVKIMSLY---YEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQ 303 (859)
T ss_pred cCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4667788999999999887521 2233345555 5555556666889999999987554 22222333333
Q ss_pred -----------HHHHHHHHHHHHHhcC--C----ch-hhhHHHHHHHHHHHhhcCCcchHHHHHHhhccC-CC--HHHHH
Q 001582 503 -----------SYMERILPHVFSRLID--P----KE-LVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ-RS--PKAKL 561 (1049)
Q Consensus 503 -----------~~l~~lL~~ll~klgD--~----k~-~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~-~~--pkvk~ 561 (1049)
.-+..++|-|++.|.- - -+ .+-.+|-.||..+.+.++-+ +++-++.|+.++ +| ++-|.
T Consensus 304 ~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-Iv~~Vl~Fiee~i~~pdwr~re 382 (859)
T KOG1241|consen 304 GLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-IVPHVLPFIEENIQNPDWRNRE 382 (859)
T ss_pred CCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc-chhhhHHHHHHhcCCcchhhhh
Confidence 4445899999998841 1 11 34557889999988877765 567788888764 55 46665
Q ss_pred HHHHHHHHHhhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCHHHHHHHH
Q 001582 562 AVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLR 641 (1049)
Q Consensus 562 ~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~h~~~~~~~~~l~~L~~~~~~~~~ 641 (1049)
+..-.+-.-+. +++.-.-..-+..+++-|+.++.|++--||+.+.-.|..|..|+-.. -+|..+...+.
T Consensus 383 aavmAFGSIl~----gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~-------~~n~~~l~~~l 451 (859)
T KOG1241|consen 383 AAVMAFGSILE----GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEA-------IINQELLQSKL 451 (859)
T ss_pred HHHHHHHhhhc----CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhh-------cccHhhhhHHH
Confidence 53322222221 22221112334566777788888999999999999999998764210 01111111111
Q ss_pred HHHhhhchhHHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 001582 642 RALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLM 721 (1049)
Q Consensus 642 ~aL~~~~p~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~ 721 (1049)
. .+..-|....+.. ..-.+.-. ++
T Consensus 452 ~-----------~l~~gL~DePrva-------------~N~CWAf~---------------~L----------------- 475 (859)
T KOG1241|consen 452 S-----------ALLEGLNDEPRVA-------------SNVCWAFI---------------SL----------------- 475 (859)
T ss_pred H-----------HHHHHhhhCchHH-------------HHHHHHHH---------------HH-----------------
Confidence 1 1111122111100 00000000 00
Q ss_pred ccCCCCCCchhhhhhhhhccccCCCccCCcccccCCCCCCCcCCCCCCcccccccccccccccccCCCCCCCCccccCCC
Q 001582 722 TGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHH 801 (1049)
Q Consensus 722 ~~~~~~~~s~~~~e~~~q~~~~~~~~~~~~~~~d~~~~~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 801 (1049)
-|..+....... . +++.+|- |
T Consensus 476 ------------aea~~eA~~s~~-------------q----t~~~t~~------------------------------y 496 (859)
T KOG1241|consen 476 ------------AEAAYEAAVSNG-------------Q----TDPATPF------------------------------Y 496 (859)
T ss_pred ------------HHHHHHhccCCC-------------C----CCccchh------------------------------H
Confidence 000000000000 0 0000000 0
Q ss_pred CCcccccCCcCCCCCCHHHHHHHhc--cCCCCChhHHHHHHHHHHHHHhcCCccchHH---hHHHHHHHHHHHhc-----
Q 001582 802 KPSAIKTNSLTDAGPSIPQILHLMC--NGNDGSPTSKHGALQQLIKASVANDHSIWTK---YFNQILTAVLEVLD----- 871 (1049)
Q Consensus 802 ~~~~~~~~~~~~~~~~I~~lL~~l~--~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~---~f~~lL~~Ll~~L~----- 871 (1049)
. +.|..||+--. +.|+ .--|.+|.+.|.++++.....+-+- ....++..|-+.+.
T Consensus 497 ~-------------~ii~~Ll~~tdr~dgnq--sNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~ 561 (859)
T KOG1241|consen 497 E-------------AIIGSLLKVTDRADGNQ--SNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILS 561 (859)
T ss_pred H-------------HHHHHHHhhccccccch--hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 11333333211 1121 3468889999999887654332211 11112222222222
Q ss_pred --CCCH--HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHhhcCch------hhHH
Q 001582 872 --DADS--SVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKD-AVPKVSNEAEHCLTVVLSQYDPF------RCLS 940 (1049)
Q Consensus 872 --D~n~--~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~D-s~~~Vr~aA~~~l~~i~~~~~p~------~~l~ 940 (1049)
|... .+...=|.+|+.+.+..+..+.++.+.++..++..+.. ....|-+.|--++-+++.++.+. ...+
T Consensus 562 ~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~p 641 (859)
T KOG1241|consen 562 LADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKP 641 (859)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 1111 12333378899999988888989988888888877765 23567888888888888877653 3555
Q ss_pred hhhhhh-cccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhhhhHHHh
Q 001582 941 VIVPLL-VTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN--QSADVRKTVVFCLVDIYIMLGKAFLPY 1017 (1049)
Q Consensus 941 vL~p~l-~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D--~~seVRKaAv~clv~l~~~lGe~l~p~ 1017 (1049)
+|.-+| ...+++.-..++.+.+.+...++ +.+.+.-+++|-.|++++.+ .+-+|+-+..-|+..|...+|.+|.||
T Consensus 642 yL~~gL~n~~e~qVc~~aVglVgdl~raL~-~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Y 720 (859)
T KOG1241|consen 642 YLLMGLSNFQEYQVCAAAVGLVGDLARALE-DDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPY 720 (859)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHH
Confidence 555555 33567777778888999888775 44457889999999999975 556799999999999999999999999
Q ss_pred hhc
Q 001582 1018 LER 1020 (1049)
Q Consensus 1018 l~~ 1020 (1049)
+.-
T Consensus 721 l~~ 723 (859)
T KOG1241|consen 721 LEM 723 (859)
T ss_pred HHH
Confidence 864
No 23
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=0.00025 Score=82.69 Aligned_cols=390 Identities=16% Similarity=0.169 Sum_probs=235.9
Q ss_pred CCCCCChHHHHHHHHHHHHHH-hcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Q 001582 430 LSPSSDWCARVSAFNYLRSLL-QQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERI 508 (1049)
Q Consensus 430 ~~~s~~WkeR~egL~~L~~ll-~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~l 508 (1049)
..-|.+-..||-||.++.... .-+.+- . +=+++++.=...-|+|++.+|--.|.|.|-.++..++..+-.|...+
T Consensus 51 ~a~s~~~n~rkGgLiGlAA~~iaLg~~~---~-~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~i 126 (675)
T KOG0212|consen 51 YAYSPHANMRKGGLIGLAAVAIALGIKD---A-GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEI 126 (675)
T ss_pred hccCcccccccchHHHHHHHHHHhcccc---H-HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHH
Confidence 345777778889999998663 223321 1 23566677777789999999999999999999999998888887776
Q ss_pred HHHHHHHhcCCchhhhHHHHHHHHHHH-h-------hcCCcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCC
Q 001582 509 LPHVFSRLIDPKELVRQPCSTTLDIVS-K-------TYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEG 580 (1049)
Q Consensus 509 L~~ll~klgD~k~~vR~~a~~~L~~~~-e-------~~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~ 580 (1049)
.-.+-+-.+|.-..||..+. .|+-+. + +|..+.+++.|-.=+- ..||.+|..++.|+. .|.. + .+
T Consensus 127 FdvL~klsaDsd~~V~~~ae-LLdRLikdIVte~~~tFsL~~~ipLL~eriy-~~n~~tR~flv~Wl~-~Lds--~--P~ 199 (675)
T KOG0212|consen 127 FDVLCKLSADSDQNVRGGAE-LLDRLIKDIVTESASTFSLPEFIPLLRERIY-VINPMTRQFLVSWLY-VLDS--V--PD 199 (675)
T ss_pred HHHHHHHhcCCccccccHHH-HHHHHHHHhccccccccCHHHHHHHHHHHHh-cCCchHHHHHHHHHH-HHhc--C--Cc
Confidence 55555555899999998774 333333 2 3555545554433221 269999999999996 3421 1 11
Q ss_pred CCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCHH-HHHHHHHHH-h---hhchhHHHH-
Q 001582 581 SGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVE-EQNSLRRAL-K---QYTPRIEVD- 654 (1049)
Q Consensus 581 ~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~h~~~~~~~~~l~~L~~~-~~~~~~~aL-~---~~~p~~~~~- 654 (1049)
+.-...+..++.-++..+.|.+.+||..+..+|..+..-+ .+=|.. .++-+...+ + .--|.++..
T Consensus 200 ~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI---------~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~a 270 (675)
T KOG0212|consen 200 LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI---------RSSPSSMDYDDMINVLVPHLQSSEPEIQLKA 270 (675)
T ss_pred HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH---------hcCccccCcccchhhccccccCCcHHHHHHH
Confidence 2122456677788888999999999999998887754322 111111 111111111 1 111111111
Q ss_pred ---HHHHHHhhhhhhccCCCCCCCCCCCCC-CcccccccccCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCc
Q 001582 655 ---LMNYLQSKKERQRLKSSYDPSDVVGTS-SEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMS 730 (1049)
Q Consensus 655 ---l~~~l~~~~~~~~~~s~~~~~~~~~~~-s~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 730 (1049)
+..|++-.+ . ...+ .++.- +. .=+|. ++++
T Consensus 271 l~Wi~efV~i~g------------~-~~l~~~s~il-----~~--iLpc~-----s~~e--------------------- 304 (675)
T KOG0212|consen 271 LTWIQEFVKIPG------------R-DLLLYLSGIL-----TA--ILPCL-----SDTE--------------------- 304 (675)
T ss_pred HHHHHHHhcCCC------------c-chhhhhhhhh-----hh--cccCC-----CCCc---------------------
Confidence 111221100 0 0000 00000 00 00000 0000
Q ss_pred hh-hhhhhhhccc--cCCCccCCcccccCCCCCCCcCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccc
Q 001582 731 DE-TKENLYQNFE--TGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIK 807 (1049)
Q Consensus 731 ~~-~~e~~~q~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 807 (1049)
.+ ..+ ..+... ... -..+++ .. + + ++
T Consensus 305 ~~~i~~-~a~~~n~~l~~-------------------l~s~~~----------------~~--~---~-----id----- 333 (675)
T KOG0212|consen 305 EMSIKE-YAQMVNGLLLK-------------------LVSSER----------------LK--E---E-----ID----- 333 (675)
T ss_pred cccHHH-HHHHHHHHHHH-------------------HHhhhh----------------hc--c---c-----cc-----
Confidence 01 001 000000 000 000000 00 0 0 01
Q ss_pred cCCcCCCCCCHHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001582 808 TNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINE 887 (1049)
Q Consensus 808 ~~~~~~~~~~I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~ 887 (1049)
-+..|.-+.+.+++.. .+.|.++|..+.-+........ -.+.+.|+..|+..|.|..-.|...+|.+|..
T Consensus 334 ------~~~ii~vl~~~l~~~~---~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~ 403 (675)
T KOG0212|consen 334 ------YGSIIEVLTKYLSDDR---EETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS 403 (675)
T ss_pred ------hHHHHHHHHHHhhcch---HHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 1223555666777665 5799999999887765544433 34778899999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhccc
Q 001582 888 MLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTE 949 (1049)
Q Consensus 888 L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~ 949 (1049)
||....+. + ...++..|++.+....+-+..-+--.++.++-.+.|+++...+..++...
T Consensus 404 i~~s~~~~--~-~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~e 462 (675)
T KOG0212|consen 404 ICSSSNSP--N-LRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILERE 462 (675)
T ss_pred HhcCcccc--c-HHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhcc
Confidence 99876653 2 35678888898888778888889999999999999999999999999753
No 24
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.32 E-value=0.00015 Score=88.29 Aligned_cols=386 Identities=17% Similarity=0.232 Sum_probs=239.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHH-HHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcch-HHHHHH
Q 001582 430 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEK-VMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPF-ESYMER 507 (1049)
Q Consensus 430 ~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~-l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~-~~~l~~ 507 (1049)
++.+.+|-.|+.|+..+..+++..+.. +.. +.+.+.+.+.|.|..|...++..+.++ .+.++. ...+..
T Consensus 122 ll~~~~~~VRk~A~~~l~~i~~~~p~~-------~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~ 192 (526)
T PF01602_consen 122 LLSDPSPYVRKKAALALLKIYRKDPDL-------VEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPK 192 (526)
T ss_dssp HHHSSSHHHHHHHHHHHHHHHHHCHCC-------HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHhccCHHH-------HHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHH
Confidence 567999999999999999999875532 233 688888889999999999999999988 332221 234444
Q ss_pred HHHHHHHHhcCCchhhhHHHHHHHHHHHhhcCCc----chHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 001582 508 ILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVD----SLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGN 583 (1049)
Q Consensus 508 lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~d----~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~~~~ 583 (1049)
+...|.+.+++.-+.++.++.+.|..+....+.+ .+++.+...+. ..++-+..++...+.. +.. .
T Consensus 193 ~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~-s~~~~V~~e~~~~i~~-l~~---------~ 261 (526)
T PF01602_consen 193 LIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQ-SSSPSVVYEAIRLIIK-LSP---------S 261 (526)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HSS---------S
T ss_pred HHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhh-ccccHHHHHHHHHHHH-hhc---------c
Confidence 4444444458888888888888877655322222 35555555444 3567888888877752 321 1
Q ss_pred hhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCHHHHHHHHHHHhhhchhHHHHHHHHHHhhh
Q 001582 584 LGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKK 663 (1049)
Q Consensus 584 ~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~h~~~~~~~~~l~~L~~~~~~~~~~aL~~~~p~~~~~l~~~l~~~~ 663 (1049)
...+..++..+..++.+++.++|..|...|..|..++ + .. +. .+. .. ..++...
T Consensus 262 ~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~---------------~~----v~--~~~--~~-~~~l~~~- 315 (526)
T PF01602_consen 262 PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-P---------------PA----VF--NQS--LI-LFFLLYD- 315 (526)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-H---------------HH----HG--THH--HH-HHHHHCS-
T ss_pred hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-c---------------hh----hh--hhh--hh-hheecCC-
Confidence 1246788889999999999999999888877775442 0 00 00 000 00 0111110
Q ss_pred hhhccCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCchhhhhhhhhcccc
Q 001582 664 ERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFET 743 (1049)
Q Consensus 664 ~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~e~~~q~~~~ 743 (1049)
+ +.+. +... -+ ...+.
T Consensus 316 ----------~---------d~~I--r~~~----------------------------------------l~-lL~~l-- 331 (526)
T PF01602_consen 316 ----------D---------DPSI--RKKA----------------------------------------LD-LLYKL-- 331 (526)
T ss_dssp ----------S---------SHHH--HHHH----------------------------------------HH-HHHHH--
T ss_pred ----------C---------ChhH--HHHH----------------------------------------HH-HHhhc--
Confidence 0 0000 0000 00 00000
Q ss_pred CCCccCCcccccCCCCCCCcCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCCCCCCHHHHHH
Q 001582 744 GANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILH 823 (1049)
Q Consensus 744 ~~~~~~~~~~~d~~~~~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~lL~ 823 (1049)
..+ . + -.+.+.++++
T Consensus 332 -----------------------~~~-------------~------------------n-----------~~~Il~eL~~ 346 (526)
T PF01602_consen 332 -----------------------ANE-------------S------------------N-----------VKEILDELLK 346 (526)
T ss_dssp -------------------------H-------------H------------------H-----------HHHHHHHHHH
T ss_pred -----------------------ccc-------------c------------------c-----------hhhHHHHHHH
Confidence 000 0 0 0001566666
Q ss_pred HhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 001582 824 LMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIV 903 (1049)
Q Consensus 824 ~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~l 903 (1049)
.+.+.. +.+-+.+++..|..++... ...+.+.+..+++.+...+..+...+...+..++.+.+... +.+
T Consensus 347 ~l~~~~--d~~~~~~~i~~I~~la~~~-----~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~----~~~ 415 (526)
T PF01602_consen 347 YLSELS--DPDFRRELIKAIGDLAEKF-----PPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR----EKI 415 (526)
T ss_dssp HHHHC----HHHHHHHHHHHHHHHHHH-----GSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH----HHH
T ss_pred HHHhcc--chhhhhhHHHHHHHHHhcc-----CchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhh----HHH
Confidence 663332 1568899999998887554 23456678888888888777778888888998887654432 224
Q ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHHHhhcCc----hhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhh
Q 001582 904 IEKLLHVTKD-AVPKVSNEAEHCLTVVLSQYDP----FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLP 978 (1049)
Q Consensus 904 Lp~Ll~~~~D-s~~~Vr~aA~~~l~~i~~~~~p----~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~ 978 (1049)
+..+++.+.+ ..+.++..+--++......++. ..++..+...+......++...+..+.++..+.+..... +
T Consensus 416 l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~---~ 492 (526)
T PF01602_consen 416 LKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQ---N 492 (526)
T ss_dssp HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHH---H
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhH---H
Confidence 6666776665 3456677777777666665543 345555555555555667778888888888877644332 2
Q ss_pred hHHHHHHHHhc--CCCHHHHHHHHHHHH
Q 001582 979 SFLPALFEAFG--NQSADVRKTVVFCLV 1004 (1049)
Q Consensus 979 ~iip~L~~~~~--D~~seVRKaAv~clv 1004 (1049)
.++..+.+... +.+.|||.-|++++.
T Consensus 493 ~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 493 EILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 45556666666 889999999999874
No 25
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.25 E-value=0.00074 Score=82.14 Aligned_cols=166 Identities=21% Similarity=0.283 Sum_probs=121.2
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT 911 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~-n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~ 911 (1049)
..-|..+|+-|..++. .+++..++..|+..+.+. +..++..++..|..++......++. ++..+++.+
T Consensus 318 ~~Ir~~~l~lL~~l~~-------~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~----~v~~l~~ll 386 (526)
T PF01602_consen 318 PSIRKKALDLLYKLAN-------ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEW----YVDTLLKLL 386 (526)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHH----HHHHHHHHH
T ss_pred hhHHHHHHHHHhhccc-------ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHH----HHHHHHHhh
Confidence 5678889998887774 357888999999999555 7789999999999998766544444 455556666
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcCch--hhHHhhhhhhcc-cchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHh
Q 001582 912 KDAVPKVSNEAEHCLTVVLSQYDPF--RCLSVIVPLLVT-EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAF 988 (1049)
Q Consensus 912 ~Ds~~~Vr~aA~~~l~~i~~~~~p~--~~l~vL~p~l~s-~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~ 988 (1049)
......+...+-..+..++...+.. ..+..+...+.. .+...+..++.+++...+.... .. ..++++..+.+.+
T Consensus 387 ~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~--~~-~~~~~~~~l~~~~ 463 (526)
T PF01602_consen 387 EISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN--TE-SAPDILRSLIENF 463 (526)
T ss_dssp HCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT--TT-HHHHHHHHHHHHH
T ss_pred hhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc--cc-cHHHHHHHHHHhh
Confidence 6666777888888888888776553 366666766654 3445566777777765544432 11 4677888889999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhh
Q 001582 989 GNQSADVRKTVVFCLVDIYIMLGK 1012 (1049)
Q Consensus 989 ~D~~seVRKaAv~clv~l~~~lGe 1012 (1049)
.+.+.+||...+.++.+++...++
T Consensus 464 ~~~~~~vk~~ilt~~~Kl~~~~~~ 487 (526)
T PF01602_consen 464 IEESPEVKLQILTALAKLFKRNPE 487 (526)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHSCS
T ss_pred ccccHHHHHHHHHHHHHHHhhCCc
Confidence 999999999999999999998873
No 26
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.23 E-value=0.00092 Score=90.08 Aligned_cols=390 Identities=16% Similarity=0.156 Sum_probs=245.5
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcch
Q 001582 422 LSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPF 501 (1049)
Q Consensus 422 l~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~ 501 (1049)
+.-.+. ++.+.+=..+..|+..|.++........+.|. + ...+..|.+.|..++.++...+.-+|..+.. +.+..
T Consensus 448 Ip~LV~--LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIi-e-aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~-~~~qi 522 (2102)
T PLN03200 448 VQLLIS--LLGLSSEQQQEYAVALLAILTDEVDESKWAIT-A-AGGIPPLVQLLETGSQKAKEDSATVLWNLCC-HSEDI 522 (2102)
T ss_pred HHHHHH--HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH-H-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-CcHHH
Confidence 344444 55666778899999999888764332111111 1 1356678888989999999999999998887 45556
Q ss_pred HHHHH--HHHHHHHHHhcCCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCC
Q 001582 502 ESYME--RILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSE 579 (1049)
Q Consensus 502 ~~~l~--~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~ 579 (1049)
+..+. ..+|.|++-|.+...-+|..|..+|..+...-..+ +++.|...+. ..+++++..+++-+...+.- .+..
T Consensus 523 r~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-~I~~Lv~LLl-sdd~~~~~~aL~vLgnIlsl--~~~~ 598 (2102)
T PLN03200 523 RACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-TISQLTALLL-GDLPESKVHVLDVLGHVLSV--ASLE 598 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-HHHHHHHHhc-CCChhHHHHHHHHHHHHHhh--cchh
Confidence 66663 58999999997666678888888888887654444 3455555443 46788888777755332221 1111
Q ss_pred CCCCh-hhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHHhcCchhHHHHhhcCCHHHHHHHHHHHhhhchhHHHHHHHH
Q 001582 580 GSGNL-GILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNY 658 (1049)
Q Consensus 580 ~~~~~-~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~h~~~~~~~~~l~~L~~~~~~~~~~aL~~~~p~~~~~l~~~ 658 (1049)
++... ....-.+++|+.+++..+.++++.|..+|..++... ++....+
T Consensus 599 d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~-------------~d~~~av------------------ 647 (2102)
T PLN03200 599 DLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR-------------QDLCESL------------------ 647 (2102)
T ss_pred HHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-------------hHHHHHH------------------
Confidence 10000 011246778888888888888888887777776421 0000000
Q ss_pred HHhhhhhhccCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCchhhhhhhh
Q 001582 659 LQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLY 738 (1049)
Q Consensus 659 l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~e~~~ 738 (1049)
+.
T Consensus 648 v~------------------------------------------------------------------------------ 649 (2102)
T PLN03200 648 AT------------------------------------------------------------------------------ 649 (2102)
T ss_pred HH------------------------------------------------------------------------------
Confidence 00
Q ss_pred hccccCCCccCCcccccCCCCCCCcCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCCCCCCH
Q 001582 739 QNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSI 818 (1049)
Q Consensus 739 q~~~~~~~~~~~~~~~d~~~~~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 818 (1049)
...|
T Consensus 650 ----------------------------------------------------------------------------agaI 653 (2102)
T PLN03200 650 ----------------------------------------------------------------------------DEII 653 (2102)
T ss_pred ----------------------------------------------------------------------------cCCH
Confidence 0002
Q ss_pred HHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHH-hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhH
Q 001582 819 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTK-YFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 897 (1049)
Q Consensus 819 ~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~-~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~ 897 (1049)
+-++..+...+ .+.++++...|..+...+....... .=...+..|.+.|.+.+..+++.|+..|..|++.-...-+
T Consensus 654 pPLV~LLss~~---~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~e 730 (2102)
T PLN03200 654 NPCIKLLTNNT---EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAE 730 (2102)
T ss_pred HHHHHHHhcCC---hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHH
Confidence 33333343332 3455556666665554322111000 0012466788999999999999999999999986544332
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhh----------HHhhhhhhcccchh--HHHHHHHHHHHHH
Q 001582 898 DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRC----------LSVIVPLLVTEDEK--TLVTCINCLTKLV 965 (1049)
Q Consensus 898 ~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~----------l~vL~p~l~s~~~~--t~~~al~~L~~li 965 (1049)
--.+..|+.|++.+++...++++.|-.++..++...+..+. +..|+.++...+.. ....+++.|..+.
T Consensus 731 i~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~ 810 (2102)
T PLN03200 731 ALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLA 810 (2102)
T ss_pred HHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHH
Confidence 22345689999999999999999999999999999886652 23334445554433 3445788887777
Q ss_pred hh-----cCHH--HHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001582 966 GR-----LSQE--ELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1008 (1049)
Q Consensus 966 e~-----~~~~--~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~ 1008 (1049)
.. +.+. ......|.=+..|++|+.+..++|-..|+..+-.+|.
T Consensus 811 ~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 811 RTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred hhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 52 1111 1111234445678899999999999999999988873
No 27
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.21 E-value=0.0004 Score=81.27 Aligned_cols=177 Identities=14% Similarity=0.230 Sum_probs=128.7
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHH
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV--MEDSVEIVIEKLLHV 910 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~--~~~~~e~lLp~Ll~~ 910 (1049)
+|.--..|..+-.+....+......-...||+.|.-+|.++...|.+....++..||.+-+.. ..++.. +--.|++.
T Consensus 660 pEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR-IcfeLvd~ 738 (975)
T COG5181 660 PEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR-ICFELVDS 738 (975)
T ss_pred HHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH-HHHHHHHH
Confidence 333333333333333333333222335678888888999888889999999999999876643 234443 34457788
Q ss_pred hCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcC
Q 001582 911 TKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 990 (1049)
Q Consensus 911 ~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D 990 (1049)
++..+|++|++|.+.+-.|.+.+.|..++.+|+..++..+-+.+.+.--.+.-+.|-+++-. ++|.|..-|.-
T Consensus 739 Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfs-------VlP~lm~dY~T 811 (975)
T COG5181 739 LKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFS-------VLPTLMSDYET 811 (975)
T ss_pred HHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchh-------hHHHHHhcccC
Confidence 88889999999999999999999999999999999988766666554444444444444333 45888899999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhHHHh
Q 001582 991 QSADVRKTVVFCLVDIYIMLGKAFLPY 1017 (1049)
Q Consensus 991 ~~seVRKaAv~clv~l~~~lGe~l~p~ 1017 (1049)
++.-|.+-..++|.-++.-+|+.-..|
T Consensus 812 Pe~nVQnGvLkam~fmFeyig~~s~dY 838 (975)
T COG5181 812 PEANVQNGVLKAMCFMFEYIGQASLDY 838 (975)
T ss_pred chhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999754433
No 28
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.011 Score=71.46 Aligned_cols=211 Identities=15% Similarity=0.175 Sum_probs=138.1
Q ss_pred HHHHHHHhcc----CCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhh-
Q 001582 818 IPQILHLMCN----GNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ- 892 (1049)
Q Consensus 818 I~~lL~~l~~----~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~- 892 (1049)
++.||..|.. ..+++|.--++|--.|.-+..--+-.. ..-++.-+.+-+..+|-.-|+.|...+..++...
T Consensus 321 ~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~I----v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~ 396 (859)
T KOG1241|consen 321 VPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDI----VPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPE 396 (859)
T ss_pred hHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccc----hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCc
Confidence 5666666643 345568888888777665553322221 1123444555666778888999998999888743
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCch--------hhHHhhhhhhcccchhHHHHHHHHHHHH
Q 001582 893 KDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLVTEDEKTLVTCINCLTKL 964 (1049)
Q Consensus 893 ~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~--------~~l~vL~p~l~s~~~~t~~~al~~L~~l 964 (1049)
...+.++....+|.+++.+.|+.-.|+..++-++-.|+..++-. ..+.+++.++... .+.-.-|...+-.|
T Consensus 397 ~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~L 475 (859)
T KOG1241|consen 397 PDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISL 475 (859)
T ss_pred hhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999998876522 2344444444432 22222222233333
Q ss_pred HhhcC--------HHHHHhhhhhHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHH
Q 001582 965 VGRLS--------QEELMAQLPSFLPALFEAFGN---QSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYA 1033 (1049)
Q Consensus 965 ie~~~--------~~~l~~~L~~iip~L~~~~~D---~~seVRKaAv~clv~l~~~lGe~l~p~l~~L~~s~~kLL~~yi 1033 (1049)
++.+. .+...+....|+..|++..+- .++..|-+|..+|.++.....++..|.+.++..--+.-|+.-|
T Consensus 476 aea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i 555 (859)
T KOG1241|consen 476 AEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTI 555 (859)
T ss_pred HHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 43321 112224556777778877763 7799999999999999999998888877665555554444443
No 29
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.04 E-value=0.0095 Score=71.53 Aligned_cols=346 Identities=16% Similarity=0.192 Sum_probs=214.1
Q ss_pred hhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcch-HHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhhc-
Q 001582 461 IQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPF-ESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTY- 538 (1049)
Q Consensus 461 ~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~-~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~- 538 (1049)
++.+-.+|-....+|+.+-.+|=+.++++++.|+..++..= ++.+.-|---|.+.||+--+-|=.-+..||-+|....
T Consensus 794 kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvig 873 (1172)
T KOG0213|consen 794 KPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIG 873 (1172)
T ss_pred ccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcc
Confidence 45566688888889999999999999999999999886441 2344444445678887555556666777777777655
Q ss_pred ------CCcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhHccccC---CCCHHHHHHH
Q 001582 539 ------SVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVH---DKNTKLKEAA 609 (1049)
Q Consensus 539 ------~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~---Dkn~~VR~aA 609 (1049)
|...+++.|.-+|. .+.-|+....+.++ ..++. .+.+|.. .+.|+.=.+.+++ --|.++|++|
T Consensus 874 m~km~pPi~dllPrltPILk-nrheKVqen~IdLv-g~Iad---rgpE~v~---aREWMRIcfeLlelLkahkK~iRRaa 945 (1172)
T KOG0213|consen 874 MTKMTPPIKDLLPRLTPILK-NRHEKVQENCIDLV-GTIAD---RGPEYVS---AREWMRICFELLELLKAHKKEIRRAA 945 (1172)
T ss_pred ccccCCChhhhcccchHhhh-hhHHHHHHHHHHHH-HHHHh---cCcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666655443 23346777666655 35543 3333433 5667665555544 4688999999
Q ss_pred HHHHHHHHHhcCchhHHHHhhc-CCHHHHHHHHHHHhhhchhHHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCcccccc
Q 001582 610 ITCIISVYTHYDSTAVLNFILS-LSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAV 688 (1049)
Q Consensus 610 ~~~L~~ly~h~~~~~~~~~l~~-L~~~~~~~~~~aL~~~~p~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~ 688 (1049)
.+.++.|-+-+|+..|+-.|++ |...+ ..+| +++
T Consensus 946 ~nTfG~IakaIGPqdVLatLlnnLkvqe-------------------------Rq~R------------vcT-------- 980 (1172)
T KOG0213|consen 946 VNTFGYIAKAIGPQDVLATLLNNLKVQE-------------------------RQNR------------VCT-------- 980 (1172)
T ss_pred HhhhhHHHHhcCHHHHHHHHHhcchHHH-------------------------HHhc------------hhh--------
Confidence 9999999999888766655443 32221 0001 000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCchhhhhhhhhccccCCCccCCcccccCCCCCCCcCCCCC
Q 001582 689 ASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFST 768 (1049)
Q Consensus 689 ~~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~e~~~q~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 768 (1049)
..+ . + . + .+
T Consensus 981 ------tva------I-----------------------a--------------I-----V--------------aE--- 989 (1172)
T KOG0213|consen 981 ------TVA------I-----------------------A--------------I-----V--------------AE--- 989 (1172)
T ss_pred ------hhh------h-----------------------h--------------h-----h--------------hh---
Confidence 000 0 0 0 0 00
Q ss_pred CcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCCCCCCHHHHHHHhccCCCCChhHHHHHHHHHHHHHh
Q 001582 769 PRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASV 848 (1049)
Q Consensus 769 Pr~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~ 848 (1049)
.++. |.
T Consensus 990 -------------~c~p---------------Ft---------------------------------------------- 995 (1172)
T KOG0213|consen 990 -------------TCGP---------------FT---------------------------------------------- 995 (1172)
T ss_pred -------------hcCc---------------hh----------------------------------------------
Confidence 0000 01
Q ss_pred cCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001582 849 ANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTV 928 (1049)
Q Consensus 849 ~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~ 928 (1049)
+|+.|+.--.-++.+|....|+.|..|++-.+..-..|+-.++|-|-+++-|...+-|..|..+++.
T Consensus 996 -------------VLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~H 1062 (1172)
T KOG0213|consen 996 -------------VLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKH 1062 (1172)
T ss_pred -------------hhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHH
Confidence 1222322224456667777888888888877777778998999999999999988889999999999
Q ss_pred HHhhcCchhhHHhhhhhhcc------cchhHHHHHH-HHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHH
Q 001582 929 VLSQYDPFRCLSVIVPLLVT------EDEKTLVTCI-NCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVF 1001 (1049)
Q Consensus 929 i~~~~~p~~~l~vL~p~l~s------~~~~t~~~al-~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~ 1001 (1049)
|+-.++..-|...++.+|.- ...|+.+.++ +++..+-..+|+. .++..+.+++-|+..-|||.-..
T Consensus 1063 l~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~-------~~~~Y~~QGLFHParkVR~~yw~ 1135 (1172)
T KOG0213|consen 1063 LALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQ-------AMLKYCLQGLFHPARKVRKRYWT 1135 (1172)
T ss_pred HhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchH-------HHHHHHHHhccCcHHHHHHHHHH
Confidence 99776655444433333321 1123332221 2222222222322 35667799999999999998777
Q ss_pred HHHHHHHHhhhhHHHhhhcCChh
Q 001582 1002 CLVDIYIMLGKAFLPYLERLNST 1024 (1049)
Q Consensus 1002 clv~l~~~lGe~l~p~l~~L~~s 1024 (1049)
.+-.+|..--+.+.++++...+.
T Consensus 1136 vyn~my~~~~dalv~~ypv~ed~ 1158 (1172)
T KOG0213|consen 1136 VYNSMYHGSQDALVACYPVEEDD 1158 (1172)
T ss_pred HHHhHhhcccchhhhccccCCCC
Confidence 77666643335687877766544
No 30
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00043 Score=86.94 Aligned_cols=196 Identities=20% Similarity=0.276 Sum_probs=153.5
Q ss_pred hhHHHHHHHHHHHHHhcCCc-cchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 001582 833 PTSKHGALQQLIKASVANDH-SIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT 911 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~-~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~ 911 (1049)
...++.+.+-|..++..... .+..++...|...|++.+.+....++...|.+|..|++.++..+..++...||.+|-.+
T Consensus 668 ~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~ 747 (1176)
T KOG1248|consen 668 TKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL 747 (1176)
T ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 45777788877777755332 34456777788888888888888899999999999999988778888888999999888
Q ss_pred CCCcHHHHHHHHHHHHHHH--hhc-----Cc-h----hhHHhhhhhhc--------------------------------
Q 001582 912 KDAVPKVSNEAEHCLTVVL--SQY-----DP-F----RCLSVIVPLLV-------------------------------- 947 (1049)
Q Consensus 912 ~Ds~~~Vr~aA~~~l~~i~--~~~-----~p-~----~~l~vL~p~l~-------------------------------- 947 (1049)
++-+..-++.|.+||..|. ..+ .| . ..+.+|.+++.
T Consensus 748 Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~ 827 (1176)
T KOG1248|consen 748 KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEK 827 (1176)
T ss_pred ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 9998999999999999888 221 22 1 13333333321
Q ss_pred ----------ccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-hhHHH
Q 001582 948 ----------TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG-KAFLP 1016 (1049)
Q Consensus 948 ----------s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lG-e~l~p 1016 (1049)
+....+..+|+.++.-++...+...+..+++.|||.+....+|....||+++...+-.+...+| +++.+
T Consensus 828 li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~ 907 (1176)
T KOG1248|consen 828 LISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELES 907 (1176)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHh
Confidence 1223455677888888888887777889999999999999999999999999999999999999 58999
Q ss_pred hhhcCChhhHHHHHH
Q 001582 1017 YLERLNSTQLRLVTI 1031 (1049)
Q Consensus 1017 ~l~~L~~s~~kLL~~ 1031 (1049)
|++ +.++++|+-
T Consensus 908 ~~p---ee~~klL~n 919 (1176)
T KOG1248|consen 908 FLP---EEDMKLLTN 919 (1176)
T ss_pred hCH---HHHHHHHHH
Confidence 988 677777664
No 31
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.93 E-value=0.00014 Score=68.05 Aligned_cols=92 Identities=25% Similarity=0.328 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCC
Q 001582 835 SKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDA 914 (1049)
Q Consensus 835 eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds 914 (1049)
.|+.+|-.|..+...-+.. +.++|+.|+..++..+.|.+..||..|++.|-.|++..+..+-+|+..++..|.....|+
T Consensus 2 ~R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4788999988887655544 788999999999999999999999999999999999988888889999999999999999
Q ss_pred cHHHHHHHHHHHH
Q 001582 915 VPKVSNEAEHCLT 927 (1049)
Q Consensus 915 ~~~Vr~aA~~~l~ 927 (1049)
.+.|+.+|+..-+
T Consensus 81 d~~Vr~~a~~Ld~ 93 (97)
T PF12755_consen 81 DENVRSAAELLDR 93 (97)
T ss_pred chhHHHHHHHHHH
Confidence 9999999965444
No 32
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.91 E-value=0.0024 Score=72.52 Aligned_cols=192 Identities=18% Similarity=0.222 Sum_probs=138.8
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcC-CccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhh--h
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAN-DHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK--D 894 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~-~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~--~ 894 (1049)
+.+.+..+.+.+ .+.|.++|..|..++... -.+++.+++..|+..++..++-....-+..|++++.-++-.++ .
T Consensus 45 L~~~Id~l~eK~---~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAIDLLTEKS---SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence 445555555443 789999999999999766 4566777899999999999987666666678888888887765 5
Q ss_pred hhHHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHhh--cCchhhH---Hhhh-----hhhccc----------chh
Q 001582 895 VMEDSVEIVIEKLLHVTKDAVP--KVSNEAEHCLTVVLSQ--YDPFRCL---SVIV-----PLLVTE----------DEK 952 (1049)
Q Consensus 895 ~~~~~~e~lLp~Ll~~~~Ds~~--~Vr~aA~~~l~~i~~~--~~p~~~l---~vL~-----p~l~s~----------~~~ 952 (1049)
.-+..++.+.|.|...+.|... .+|.++..|+-.++-. ..+..+. ..+- .+++.+ +..
T Consensus 122 ~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 122 DSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred cHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 5667777788888888777643 4556666666554433 2332221 2222 111211 124
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh
Q 001582 953 TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK 1012 (1049)
Q Consensus 953 t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe 1012 (1049)
....||..-+.|+..++...+...+...+|.|...++..+.+||.+|-.++.-+|....+
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 556778888888888887777777888899999999999999999999999999988874
No 33
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.90 E-value=0.00074 Score=80.01 Aligned_cols=199 Identities=22% Similarity=0.312 Sum_probs=147.7
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhhhh
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVL-DDADSSVREVALSLINEMLKNQKDVM 896 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L-~D~n~~vr~~AL~~L~~L~~~~~~~~ 896 (1049)
+.+++....+.++ +..|..+++.+..++..-... +.++.++..+...+ ...+...+..++.++..+.+.+--+-
T Consensus 191 l~~l~~~~~~~~~--~~~~~~~~~~la~LvNK~~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 191 LQSLLNLALSSED--EFSRLAALQLLASLVNKWPDD---DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHcCCC--hHHHHHHHHHHHHHHcCCCCh---hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 5566666554432 678999999888888552221 24666777777666 44556678889999999998876666
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcC--------c-------hhhHHhhhhhhcc----cchhHHHHH
Q 001582 897 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD--------P-------FRCLSVIVPLLVT----EDEKTLVTC 957 (1049)
Q Consensus 897 ~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~--------p-------~~~l~vL~p~l~s----~~~~t~~~a 957 (1049)
.+....++.+|++.+.| +++...|-.++..++.-.+ . .++|..+.|.+.. .+...+..+
T Consensus 266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~y 343 (415)
T PF12460_consen 266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNY 343 (415)
T ss_pred CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHH
Confidence 67788889999999998 6677777777777765421 1 2456665665532 223356678
Q ss_pred HHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhhhcCCh
Q 001582 958 INCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNS 1023 (1049)
Q Consensus 958 l~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l~~L~~ 1023 (1049)
+..|..+++..+.+.+..+++.++|-|.++++-.+.+|+.++..++..+..--.+-+.+|+..|=+
T Consensus 344 L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~ 409 (415)
T PF12460_consen 344 LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIP 409 (415)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999987776665567788876433
No 34
>PTZ00429 beta-adaptin; Provisional
Probab=97.89 E-value=0.18 Score=63.75 Aligned_cols=172 Identities=9% Similarity=0.125 Sum_probs=95.6
Q ss_pred HHHHHHHhcc-CCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhh
Q 001582 818 IPQILHLMCN-GNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 896 (1049)
Q Consensus 818 I~~lL~~l~~-~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~ 896 (1049)
+.+++++|.. ..+.+.+-++++++.|..+.... .....+++..|++.+.+... +...++.+++.|++..+..+
T Consensus 366 v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-----~~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~ 439 (746)
T PTZ00429 366 APEILKELAEYASGVDMVFVVEVVRAIASLAIKV-----DSVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL 439 (746)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-----hHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH
Confidence 6667777643 22233678899999999887432 22345667777787776443 44568999999998776542
Q ss_pred HHHHHHHHHHHHHHhC-C--CcHHHHHHHHHHHHHHHhhc-CchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHH
Q 001582 897 EDSVEIVIEKLLHVTK-D--AVPKVSNEAEHCLTVVLSQY-DPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEE 972 (1049)
Q Consensus 897 ~~~~e~lLp~Ll~~~~-D--s~~~Vr~aA~~~l~~i~~~~-~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~ 972 (1049)
++..|++.+. + ...+.+.+..=++-..+..+ ....++..++..+......++...|....+++-..+ +.
T Consensus 440 ------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p-~~ 512 (746)
T PTZ00429 440 ------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDP-QG 512 (746)
T ss_pred ------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCc-HH
Confidence 4555554331 1 11233333233333333222 112333333333333445566666666667776554 33
Q ss_pred HHhhhhhHHHHHHHHh-cCCCHHHHHHHHHHHHH
Q 001582 973 LMAQLPSFLPALFEAF-GNQSADVRKTVVFCLVD 1005 (1049)
Q Consensus 973 l~~~L~~iip~L~~~~-~D~~seVRKaAv~clv~ 1005 (1049)
+...+..+ |..+. ++.++|||.-|++.+.-
T Consensus 513 ~~~~l~~v---L~~~t~~~~d~DVRDRA~~Y~rL 543 (746)
T PTZ00429 513 MEPQLNRV---LETVTTHSDDPDVRDRAFAYWRL 543 (746)
T ss_pred HHHHHHHH---HHHHHhcCCChhHHHHHHHHHHH
Confidence 33333222 33443 46888999999986643
No 35
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.085 Score=64.40 Aligned_cols=163 Identities=15% Similarity=0.219 Sum_probs=109.6
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Q 001582 430 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERIL 509 (1049)
Q Consensus 430 ~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL 509 (1049)
++.|.+=.++.||+..|-.++.+|.. ...++....|-++--|..|-.+.---|...+.-- +-+-.|-
T Consensus 43 lLdSnkd~~KleAmKRIia~iA~G~d--------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeq-----pdLALLS 109 (968)
T KOG1060|consen 43 LLDSNKDSLKLEAMKRIIALIAKGKD--------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQ-----PDLALLS 109 (968)
T ss_pred HHhccccHHHHHHHHHHHHHHhcCCc--------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcC-----CCceeee
Confidence 45578888999999999999988763 4567777777777888877665554444444332 2222222
Q ss_pred HHHHHH-hcCCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhccC---CCHHHHHHHHHHHHHHhhhhccCCCCCCChh
Q 001582 510 PHVFSR-LIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ---RSPKAKLAVIEFAISSLNKHAMNSEGSGNLG 585 (1049)
Q Consensus 510 ~~ll~k-lgD~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~---~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~ 585 (1049)
-.-|+| |+|....+|.-|..+|.-|+=. ++.++++-.+.+. -+|-||..+.+-+. .| |-.+++.
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIRvp----~IaPI~llAIk~~~~D~s~yVRk~AA~AIp-KL--YsLd~e~----- 177 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIRVP----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIP-KL--YSLDPEQ----- 177 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcchh----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhH-HH--hcCChhh-----
Confidence 333455 4999999999999999887733 3444444444332 47999998876554 34 4344432
Q ss_pred hHHHHHHhHccccCCCCHHHHHHHHHHHHHHHH
Q 001582 586 ILKLWLAKLTPLVHDKNTKLKEAAITCIISVYT 618 (1049)
Q Consensus 586 ~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~ 618 (1049)
-...+..|-.++.|+++-|--+|.-+.-++|-
T Consensus 178 -k~qL~e~I~~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 178 -KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred -HHHHHHHHHHHhcCCCCcchhHHHHHHHHhch
Confidence 12334455568999999999999988888774
No 36
>PRK09687 putative lyase; Provisional
Probab=97.79 E-value=0.00049 Score=77.04 Aligned_cols=150 Identities=13% Similarity=0.173 Sum_probs=107.0
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEV-LDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT 911 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~-L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~ 911 (1049)
+..|..|...|..+-..... ....+..|... +.|++..||..|+..|..++.... .+...++..+...+
T Consensus 68 ~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~ 137 (280)
T PRK09687 68 PIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITA 137 (280)
T ss_pred HHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHh
Confidence 78999999888765322111 22345556655 689999999999999999864321 11233566677777
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCC
Q 001582 912 KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQ 991 (1049)
Q Consensus 912 ~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~ 991 (1049)
.|+...||..|..++. .+.....++.|+..+...++..+..|+..|+.+ .. .-+.+++.|.+.++|.
T Consensus 138 ~D~~~~VR~~a~~aLg----~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~--~~-------~~~~~~~~L~~~L~D~ 204 (280)
T PRK09687 138 FDKSTNVRFAVAFALS----VINDEAAIPLLINLLKDPNGDVRNWAAFALNSN--KY-------DNPDIREAFVAMLQDK 204 (280)
T ss_pred hCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC--CC-------CCHHHHHHHHHHhcCC
Confidence 8888899988888874 334457788888999888888888888877765 11 1234557788888999
Q ss_pred CHHHHHHHHHHHHH
Q 001582 992 SADVRKTVVFCLVD 1005 (1049)
Q Consensus 992 ~seVRKaAv~clv~ 1005 (1049)
+.+||+.|+.+|..
T Consensus 205 ~~~VR~~A~~aLg~ 218 (280)
T PRK09687 205 NEEIRIEAIIGLAL 218 (280)
T ss_pred ChHHHHHHHHHHHc
Confidence 99999999988864
No 37
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.76 E-value=0.0049 Score=79.99 Aligned_cols=150 Identities=15% Similarity=0.191 Sum_probs=106.0
Q ss_pred CHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcc
Q 001582 421 SLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKP 500 (1049)
Q Consensus 421 ~l~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~ 500 (1049)
++.+.+. .+.|.+=..|..|++.|..+-. ...++.|.+.|.|++..|-..+++.|..+......
T Consensus 622 ~~~~L~~--~L~D~d~~VR~~Av~~L~~~~~-------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~- 685 (897)
T PRK13800 622 SVAELAP--YLADPDPGVRRTAVAVLTETTP-------------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP- 685 (897)
T ss_pred hHHHHHH--HhcCCCHHHHHHHHHHHhhhcc-------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-
Confidence 4445555 6789999999999988876532 22456677888999999999999999988643321
Q ss_pred hHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCC
Q 001582 501 FESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEG 580 (1049)
Q Consensus 501 ~~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~ 580 (1049)
.+.|...|.|..+.||..|..+|..+... + ...|...+. ..+|.||.+++..|.. + +..
T Consensus 686 --------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~---~--~~~l~~~L~-D~d~~VR~~Av~aL~~-~-----~~~- 744 (897)
T PRK13800 686 --------APALRDHLGSPDPVVRAAALDVLRALRAG---D--AALFAAALG-DPDHRVRIEAVRALVS-V-----DDV- 744 (897)
T ss_pred --------hHHHHHHhcCCCHHHHHHHHHHHHhhccC---C--HHHHHHHhc-CCCHHHHHHHHHHHhc-c-----cCc-
Confidence 24566667778889999999988876521 1 234444444 3789999988776642 1 211
Q ss_pred CCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHH
Q 001582 581 SGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYT 618 (1049)
Q Consensus 581 ~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~ 618 (1049)
..+..++.|.+.+||.+|...|..+..
T Consensus 745 -----------~~l~~~l~D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 745 -----------ESVAGAATDENREVRIAVAKGLATLGA 771 (897)
T ss_pred -----------HHHHHHhcCCCHHHHHHHHHHHHHhcc
Confidence 224567899999999999999988753
No 38
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.72 E-value=0.041 Score=65.13 Aligned_cols=152 Identities=14% Similarity=0.165 Sum_probs=101.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCch-------hhHHhhh
Q 001582 871 DDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-------RCLSVIV 943 (1049)
Q Consensus 871 ~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~-------~~l~vL~ 943 (1049)
..++.+|....|+.+..|++-.+..-..|+-.+.|-|-+++.|...+-|..|...++.++-+|+.- .++++|.
T Consensus 810 ~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllw 889 (975)
T COG5181 810 ETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLW 889 (975)
T ss_pred cCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhh
Confidence 345666777778888888887777777888888999999999998889999999999999887653 2455555
Q ss_pred hhhcccchhHHHHH-HHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhhh---
Q 001582 944 PLLVTEDEKTLVTC-INCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLE--- 1019 (1049)
Q Consensus 944 p~l~s~~~~t~~~a-l~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l~--- 1019 (1049)
|.|-.. .|+.+.+ .+.+..+..-+|. ..+|..+.+++-|+.+-|||+=...+-.+|-.-.+.+.||++
T Consensus 890 pNIle~-sPhvi~~~~Eg~e~~~~~lg~-------g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~~~damvp~ypv~~ 961 (975)
T COG5181 890 PNILEP-SPHVIQSFDEGMESFATVLGS-------GAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFDSDAMVPCYPVEE 961 (975)
T ss_pred hhccCC-CcHHHHHHHHHHHHHHHHhcc-------HHHHHHHHHhccCchHHHHHHHHHHHhhhhhcccccccccccCCC
Confidence 554322 2322222 2333332222222 346777899999999999998666555444333456777664
Q ss_pred cCChhhHHHHH
Q 001582 1020 RLNSTQLRLVT 1030 (1049)
Q Consensus 1020 ~L~~s~~kLL~ 1030 (1049)
.+++...+-|.
T Consensus 962 d~n~e~~~~l~ 972 (975)
T COG5181 962 DLNPELARTLH 972 (975)
T ss_pred CcCHHHHhhhh
Confidence 56666555544
No 39
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.71 E-value=0.096 Score=71.51 Aligned_cols=186 Identities=17% Similarity=0.246 Sum_probs=131.0
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhH
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 897 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~ 897 (1049)
|+-|+..|...+ .+.+..|+..|..+...+....+.-.=...+..|.+.|...+..+++.|+-+|..|+.+.. ...
T Consensus 448 Ip~LV~LL~s~s---~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~-qir 523 (2102)
T PLN03200 448 VQLLISLLGLSS---EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSE-DIR 523 (2102)
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcH-HHH
Confidence 566666666543 4677778877777665432111100012246778888888889999999999999986422 222
Q ss_pred HHH--HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHh
Q 001582 898 DSV--EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMA 975 (1049)
Q Consensus 898 ~~~--e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~ 975 (1049)
..+ ...||.|++.+.+...++++.|-.+|..++...+.. .++.++.++.+.+......|++.++.++.-...+....
T Consensus 524 ~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~ 602 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVR 602 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHH
Confidence 223 247899999998888899988888888888765554 44666777878777777888998888876444332211
Q ss_pred h---hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001582 976 Q---LPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1008 (1049)
Q Consensus 976 ~---L~~iip~L~~~~~D~~seVRKaAv~clv~l~~ 1008 (1049)
. -...+|.|.+.+.+.+.++++.|+.+|..++.
T Consensus 603 ~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a 638 (2102)
T PLN03200 603 EGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS 638 (2102)
T ss_pred HhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 1 13467899999999999999999999988864
No 40
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.71 E-value=0.00049 Score=64.44 Aligned_cols=89 Identities=13% Similarity=0.149 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHH
Q 001582 877 VREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVT 956 (1049)
Q Consensus 877 vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~ 956 (1049)
.|..+|..|..++..++..+.+|++.+++.++.++.|+...||..|-+++-.|+++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~------------------------ 57 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV------------------------ 57 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH------------------------
Confidence 36788999999999999999999999999999999998777777766666655532
Q ss_pred HHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHH
Q 001582 957 CINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVF 1001 (1049)
Q Consensus 957 al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~ 1001 (1049)
. .+.+..++.+|+++|.+.+.|.+..||++|..
T Consensus 58 -----------~-~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 58 -----------A-RGEILPYFNEIFDALCKLSADPDENVRSAAEL 90 (97)
T ss_pred -----------H-HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence 2 24444688999999999999999999999954
No 41
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.00049 Score=87.86 Aligned_cols=161 Identities=20% Similarity=0.356 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHhCC
Q 001582 835 SKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK-DVMEDSVEIVIEKLLHVTKD 913 (1049)
Q Consensus 835 eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~-~~~~~~~e~lLp~Ll~~~~D 913 (1049)
.-..|+..|=+.+........+++|++|++.|+..|.++.-.||+.+|-.|..|++..+ ..+.+.+..+...++..+.|
T Consensus 1013 ~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDD 1092 (1702)
T KOG0915|consen 1013 KVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDD 1092 (1702)
T ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777778889999999999999999999999999999999998543 23334444566667777889
Q ss_pred CcHHHHHHHHHHHHHHHhhc----Cc------hhhHHhhhhhhc-----ccchhHHHHHHHHHHHHHhhcCHHHHHhhhh
Q 001582 914 AVPKVSNEAEHCLTVVLSQY----DP------FRCLSVIVPLLV-----TEDEKTLVTCINCLTKLVGRLSQEELMAQLP 978 (1049)
Q Consensus 914 s~~~Vr~aA~~~l~~i~~~~----~p------~~~l~vL~p~l~-----s~~~~t~~~al~~L~~lie~~~~~~l~~~L~ 978 (1049)
-++-||++|+.+++.+.+.| ++ ...+.+++|.+- ++-...+..||..+-.+++..| ..+.+++|
T Consensus 1093 IKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg-~~lkP~~~ 1171 (1702)
T KOG0915|consen 1093 IKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG-KELKPHFP 1171 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch-hhhcchhh
Confidence 99999999999998877553 33 246777777663 4556678899999999999887 47779999
Q ss_pred hHHHHHHHHhcCCCHHHH
Q 001582 979 SFLPALFEAFGNQSADVR 996 (1049)
Q Consensus 979 ~iip~L~~~~~D~~seVR 996 (1049)
.++|.|...++.-++.|=
T Consensus 1172 ~LIp~ll~~~s~lE~~vL 1189 (1702)
T KOG0915|consen 1172 KLIPLLLNAYSELEPQVL 1189 (1702)
T ss_pred HHHHHHHHHccccchHHH
Confidence 999999999987776664
No 42
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.70 E-value=0.074 Score=66.63 Aligned_cols=178 Identities=17% Similarity=0.187 Sum_probs=128.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Q 001582 430 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERIL 509 (1049)
Q Consensus 430 ~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL 509 (1049)
++..-.|-.|.++++.|.+++..+... .+...+..+|.+.-.+ -.++.-+..++.|......-=++-++.=+
T Consensus 167 l~~~eet~vr~k~ve~l~~v~~~~~~~-----~~~~~lv~l~~~l~~~---d~~~sr~sacglf~~~~~~~~~~~vk~el 238 (759)
T KOG0211|consen 167 LATVEETGVREKAVESLLKVAVGLPKE-----KLREHLVPLLKRLATG---DWFQSRLSACGLFGKLYVSLPDDAVKREL 238 (759)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcChH-----HHHHHHHHHHHHccch---hhhhcchhhhhhhHHhccCCChHHHHHHH
Confidence 566777999999999999999887641 1224455555554444 56667777777777777644448899999
Q ss_pred HHHHHHh-cCCchhhhHHHHHHHHHHHhhcCC----cchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCCCCCh
Q 001582 510 PHVFSRL-IDPKELVRQPCSTTLDIVSKTYSV----DSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNL 584 (1049)
Q Consensus 510 ~~ll~kl-gD~k~~vR~~a~~~L~~~~e~~~~----d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~ 584 (1049)
..++..+ -|--+.||.++.+-|..++..++. +.+++.+...+.|.+. -||.++.+-+.. +.++ ++.+.
T Consensus 239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~Ddqd-sVr~~a~~~~~~-l~~l-~~~~~---- 311 (759)
T KOG0211|consen 239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQD-SVREAAVESLVS-LLDL-LDDDD---- 311 (759)
T ss_pred HHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchh-hHHHHHHHHHHH-HHHh-cCCch----
Confidence 9999999 689999999999999998866554 3344444444444343 488888888764 4443 22211
Q ss_pred hhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHHhcCc
Q 001582 585 GILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDS 622 (1049)
Q Consensus 585 ~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~h~~~ 622 (1049)
+........++...+|++..||.........+|..+|+
T Consensus 312 d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~ 349 (759)
T KOG0211|consen 312 DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP 349 (759)
T ss_pred hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc
Confidence 34456677788899999999999999999999999987
No 43
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.68 E-value=0.00026 Score=73.17 Aligned_cols=101 Identities=20% Similarity=0.350 Sum_probs=85.8
Q ss_pred hhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH---H
Q 001582 931 SQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI---Y 1007 (1049)
Q Consensus 931 ~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l---~ 1007 (1049)
+.++....|++...++...+.|-+..|.+....++++.+.+.+.+.||.+++.|.++++.++++|..++++||..+ .
T Consensus 32 e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 32 EKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3455566788888888877888788888888888888667888899999999999999999999999999999999 9
Q ss_pred HHhhhhHHHhhhcCChhhHHHHHHHHHH
Q 001582 1008 IMLGKAFLPYLERLNSTQLRLVTIYANR 1035 (1049)
Q Consensus 1008 ~~lGe~l~p~l~~L~~s~~kLL~~yi~R 1035 (1049)
..+|+++.||+.+| +-.++.|.++
T Consensus 112 ~~vG~aLvPyyrqL----Lp~ln~f~~k 135 (183)
T PF10274_consen 112 DMVGEALVPYYRQL----LPVLNLFKNK 135 (183)
T ss_pred hhhhHHHHHHHHHH----HHHHHHHHhc
Confidence 99999999998875 4456666654
No 44
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.50 E-value=0.33 Score=59.15 Aligned_cols=162 Identities=19% Similarity=0.219 Sum_probs=109.1
Q ss_pred HHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHH--HHHHHHHHHHhcCCc
Q 001582 443 FNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ERILPHVFSRLIDPK 520 (1049)
Q Consensus 443 L~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l--~~lL~~ll~klgD~k 520 (1049)
.+.|..+++.... . ..+..+...|.+.|..+|.+|-..+|..|..++... .....++ ..+++.|+.+++|..
T Consensus 59 ~~iL~~~l~~~~~--~---~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~d 132 (503)
T PF10508_consen 59 CDILKRLLSALSP--D---SLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDPD 132 (503)
T ss_pred HHHHHHHHhccCH--H---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCCc
Confidence 3446666765432 1 225677888899999999999999999998888544 3444555 578999999999999
Q ss_pred hhhhHHHHHHHHHHHhhcCCc-ch-----HHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCCCCChhhHH--HHHH
Q 001582 521 ELVRQPCSTTLDIVSKTYSVD-SL-----LPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILK--LWLA 592 (1049)
Q Consensus 521 ~~vR~~a~~~L~~~~e~~~~d-~~-----l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~--~~l~ 592 (1049)
..|...|.++|..+...-... .+ +..|...+ .+.|.-+|..+++.+++ +... +.+.+ ..+. -.+.
T Consensus 133 ~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~-i~~~--S~~~~---~~~~~sgll~ 205 (503)
T PF10508_consen 133 LSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVE-IASH--SPEAA---EAVVNSGLLD 205 (503)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHH-HHhc--CHHHH---HHHHhccHHH
Confidence 999999999999998543221 12 33333323 23477888888887764 4321 11111 1112 1567
Q ss_pred hHccccCCCCHHHHHHHHHHHHHHH
Q 001582 593 KLTPLVHDKNTKLKEAAITCIISVY 617 (1049)
Q Consensus 593 ~l~~~~~Dkn~~VR~aA~~~L~~ly 617 (1049)
+++..+.+...-|+..|.++|..|-
T Consensus 206 ~ll~eL~~dDiLvqlnalell~~La 230 (503)
T PF10508_consen 206 LLLKELDSDDILVQLNALELLSELA 230 (503)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHH
Confidence 7777777877778888888887764
No 45
>PRK09687 putative lyase; Provisional
Probab=97.42 E-value=0.002 Score=72.15 Aligned_cols=159 Identities=11% Similarity=0.160 Sum_probs=112.8
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhH
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 897 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~ 897 (1049)
+.+|+..|.+.+ ...|..|+..|..+ +.. .++..+...+.|.+..+|..|..+|..|=.....
T Consensus 25 ~~~L~~~L~d~d---~~vR~~A~~aL~~~---~~~--------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 25 DDELFRLLDDHN---SLKRISSIRVLQLR---GGQ--------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred HHHHHHHHhCCC---HHHHHHHHHHHHhc---Ccc--------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence 667777786664 67999999887643 222 2344566677899999999999999986421111
Q ss_pred HHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHhhcC--chhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHH
Q 001582 898 DSVEIVIEKLLHV-TKDAVPKVSNEAEHCLTVVLSQYD--PFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELM 974 (1049)
Q Consensus 898 ~~~e~lLp~Ll~~-~~Ds~~~Vr~aA~~~l~~i~~~~~--p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~ 974 (1049)
....++.|... ..|+...|+..|..++-.+...-. ....+..+...+...++.++..++..|+.+ +.
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~~---- 157 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----ND---- 157 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----CC----
Confidence 22355666654 688889999999999987753221 124555566666677888888888776432 21
Q ss_pred hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001582 975 AQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1006 (1049)
Q Consensus 975 ~~L~~iip~L~~~~~D~~seVRKaAv~clv~l 1006 (1049)
+..++.|...+.|.+++||..|+++|..+
T Consensus 158 ---~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 158 ---EAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 34568889999999999999999999976
No 46
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.17 E-value=0.025 Score=59.11 Aligned_cols=164 Identities=14% Similarity=0.267 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhC
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK 912 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~ 912 (1049)
+.-|..++..+..+..-.. ...+..+..+...|.|.++.||..|+.+|..|+.+..-+++.. ++..++.++.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~-----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~---l~~~~l~~l~ 73 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP-----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQ---LFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc-----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhh---hhHHHHHHHc
Confidence 4567788888888764332 2345567788899999999999999999999997544444433 4566667779
Q ss_pred CCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcc--c--ch-----hHHHHHHHHHHHHHhhcC-HHHHHhhhhhHHH
Q 001582 913 DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVT--E--DE-----KTLVTCINCLTKLVGRLS-QEELMAQLPSFLP 982 (1049)
Q Consensus 913 Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s--~--~~-----~t~~~al~~L~~lie~~~-~~~l~~~L~~iip 982 (1049)
|+.++|+..|..++..+.....|..+...+.+.+.. . .+ .....-.+++..+++... .......+..+..
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~ 153 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQ 153 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 999999999999999999987787766666666642 1 11 111122344445555555 3333334455555
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH
Q 001582 983 ALFEAFGNQSADVRKTVVFCLV 1004 (1049)
Q Consensus 983 ~L~~~~~D~~seVRKaAv~clv 1004 (1049)
.+..+..+.+..|-+-+.+||-
T Consensus 154 ~~~~~~~~~~~~~~~d~~~~l~ 175 (178)
T PF12717_consen 154 RFLNAVVDEDERVLRDILYCLS 175 (178)
T ss_pred HHHHHcccccHHHHHHHHHHHH
Confidence 5555554667777777777763
No 47
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.0094 Score=69.25 Aligned_cols=182 Identities=19% Similarity=0.149 Sum_probs=136.1
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 001582 432 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPH 511 (1049)
Q Consensus 432 ~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~~ 511 (1049)
.+.-|++|.-..-++.++..+.. +.. ++.|+.+...+.....||+.++-++++..|+..+..++..+..|...+|..
T Consensus 227 ts~~~~~ritd~Af~ael~~~~~--l~~-~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~lda 303 (533)
T KOG2032|consen 227 TSEKENGRITDIAFFAELKRPKE--LDK-TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDA 303 (533)
T ss_pred chhcccchHHHHHHHHHHhCccc--ccc-cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHH
Confidence 56779999999999998887533 211 257899999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhh------ccCCCHHHHHHHHHHHHHHhhhhccCCCCCCCh
Q 001582 512 VFSRLI-DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSL------DEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNL 584 (1049)
Q Consensus 512 ll~klg-D~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l------~~~~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~ 584 (1049)
++--|= |..+.|.=.+.++|..+.+....+.+.+.+..+- .+..++++|.+.+--. ..|+.|..++.+-...
T Consensus 304 ii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lf-g~L~~l~g~~~e~~Ft 382 (533)
T KOG2032|consen 304 IIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLF-GALAKLAGGGWEEFFT 382 (533)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHH-HHHHHHcCCCchhhhH
Confidence 999993 4557788889999999998877766655554332 2334789999876544 4677665554432222
Q ss_pred hhHHHHHHhHccccCCCCHHHHHHHHHHHHHHH
Q 001582 585 GILKLWLAKLTPLVHDKNTKLKEAAITCIISVY 617 (1049)
Q Consensus 585 ~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly 617 (1049)
+.++--+..+.--++|+|+.|-+|.+..+-..|
T Consensus 383 e~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~ 415 (533)
T KOG2032|consen 383 EQVKKRLAPLLLHLQDPNPYVARACRSELRTCY 415 (533)
T ss_pred HHHHhccccceeeeCCCChHHHHHHHHHHHhcC
Confidence 222222333444578999999999888776655
No 48
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.08 E-value=0.46 Score=59.79 Aligned_cols=170 Identities=14% Similarity=0.106 Sum_probs=124.1
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhC
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK 912 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~ 912 (1049)
|.-|.+.++-+-.++..-+.++.++-|. ..+..||.|..-.+|++|...+..++...|..| +...++|+++...+
T Consensus 493 wRvr~ail~~ip~la~q~~~~~~~~~~~---~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w--~~~~~i~k~L~~~~ 567 (759)
T KOG0211|consen 493 WRVRLAILEYIPQLALQLGVEFFDEKLA---ELLRTWLPDHVYSIREAAARNLPALVETFGSEW--ARLEEIPKLLAMDL 567 (759)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhHHHH---HHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch--hHHHhhHHHHHHhc
Confidence 7788888888777776666555444333 235567788778899999999999998887443 34567999999888
Q ss_pred CCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhc----ccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHh
Q 001582 913 DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV----TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAF 988 (1049)
Q Consensus 913 Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~----s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~ 988 (1049)
+..-.+|...-.++..|+.++.-+-.-+.+.|.+. ....-.|..+++.|.+++.-+..+.....+ .|.+....
T Consensus 568 q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v---~pll~~L~ 644 (759)
T KOG0211|consen 568 QDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEV---LPLLETLS 644 (759)
T ss_pred CcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHH---HHHHHHhc
Confidence 88888999999999999999887755455555443 333456778899999888777666655444 45555555
Q ss_pred cCCCHHHHHHHHHHHHHHHHHh
Q 001582 989 GNQSADVRKTVVFCLVDIYIML 1010 (1049)
Q Consensus 989 ~D~~seVRKaAv~clv~l~~~l 1010 (1049)
.|++-+||-.|..++..+-...
T Consensus 645 ~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 645 SDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred cCcccchhHHHHHHHHHHHHHH
Confidence 5999999999988876654444
No 49
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.012 Score=69.68 Aligned_cols=187 Identities=18% Similarity=0.256 Sum_probs=137.0
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhH
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 897 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~ 897 (1049)
+..||..+..... -.-.+.+.-.|..+.+...+....+....+|..|+..|...|..|..-||-.|.+|...-.....
T Consensus 196 l~pLl~~l~~~~~--~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq 273 (514)
T KOG0166|consen 196 LDPLLRLLNKSDK--LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQ 273 (514)
T ss_pred hHHHHHHhccccc--hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 5667766654421 12344455556777777666555567889999999999999999999999999999976555554
Q ss_pred HHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCch-------hhHHhhhhhhc-ccchhHHHHHHHHHHHHHhhc
Q 001582 898 DSVE-IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLV-TEDEKTLVTCINCLTKLVGRL 968 (1049)
Q Consensus 898 ~~~e-~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~-------~~l~vL~p~l~-s~~~~t~~~al~~L~~lie~~ 968 (1049)
-.++ .++|.|++.++++...|+..|..++-.|+...+-. ..+++|..++. +.+..++.+|...+..+.. .
T Consensus 274 ~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-G 352 (514)
T KOG0166|consen 274 MVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-G 352 (514)
T ss_pred HHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-C
Confidence 4433 48999999999998889988888777666554332 35777777776 4444567778888887764 4
Q ss_pred CHHHHHhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001582 969 SQEELMAQL-PSFLPALFEAFGNQSADVRKTVVFCLVDIY 1007 (1049)
Q Consensus 969 ~~~~l~~~L-~~iip~L~~~~~D~~seVRKaAv~clv~l~ 1007 (1049)
.++.+...+ ..++|.|+..+...+=+.||.|..++-.+.
T Consensus 353 ~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 353 NQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred CHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence 455665444 478999999999999999999999987554
No 50
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.043 Score=62.02 Aligned_cols=177 Identities=18% Similarity=0.227 Sum_probs=119.1
Q ss_pred CChhHHHHHHHHHHHHHhcC--CccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHH
Q 001582 831 GSPTSKHGALQQLIKASVAN--DHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVE-IVIEKL 907 (1049)
Q Consensus 831 ~~~~eR~~aL~~L~~li~~~--~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e-~lLp~L 907 (1049)
.+.+++.+||+.|..++..= ...+. .++-+.. |+..|++++..+|+.|..+|...+++.+.--+..+| -.+.+|
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~--~~ggl~~-ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLI--SLGGLVP-LLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHh--hccCHHH-HHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 34789999999999988532 22221 2333333 444889999999999999999999987754333322 156666
Q ss_pred HHHh-CCCcHHHHHHHHHHHHHHHhhcCchh-------hHHhhhhhhcc--cchhHHHHHHHHHHHHHhhcCHHHHHhhh
Q 001582 908 LHVT-KDAVPKVSNEAEHCLTVVLSQYDPFR-------CLSVIVPLLVT--EDEKTLVTCINCLTKLVGRLSQEELMAQL 977 (1049)
Q Consensus 908 l~~~-~Ds~~~Vr~aA~~~l~~i~~~~~p~~-------~l~vL~p~l~s--~~~~t~~~al~~L~~lie~~~~~~l~~~L 977 (1049)
+..+ .|...+++..|--|+-.++.+.+|-. -+.+|.+++++ .+.+.++-++.++..+++....+.- ..-
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d-~~~ 250 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED-IAS 250 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh-HHH
Confidence 6554 45668899999999999999877742 46677888877 5567777888999988866533221 111
Q ss_pred hhHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh
Q 001582 978 PSFLPALFEAF-GNQSADVRKTVVFCLVDIYIMLG 1011 (1049)
Q Consensus 978 ~~iip~L~~~~-~D~~seVRKaAv~clv~l~~~lG 1011 (1049)
+..++.+...+ ..-+.+++.+++.++..+-..+.
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 22233333333 34567789888888766655544
No 51
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.87 E-value=0.064 Score=65.26 Aligned_cols=181 Identities=16% Similarity=0.165 Sum_probs=124.9
Q ss_pred hHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHH-HHHHHHHHHHhC
Q 001582 834 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSV-EIVIEKLLHVTK 912 (1049)
Q Consensus 834 ~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~-e~lLp~Ll~~~~ 912 (1049)
++-..+.+-|..++....+. .-..++...|...|...++.||..+|..|..++++-....+-.. ..+++.|+.+++
T Consensus 53 e~v~~~~~iL~~~l~~~~~~---~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~ 129 (503)
T PF10508_consen 53 EQVELICDILKRLLSALSPD---SLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR 129 (503)
T ss_pred HHHHHHHHHHHHHHhccCHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc
Confidence 33344444455555544333 33566778888899999999999999999998865443333221 347899999999
Q ss_pred CCcHHHHHHHHHHHHHHHhhcCchh-h-----HHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhh-hhHHHHHH
Q 001582 913 DAVPKVSNEAEHCLTVVLSQYDPFR-C-----LSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL-PSFLPALF 985 (1049)
Q Consensus 913 Ds~~~Vr~aA~~~l~~i~~~~~p~~-~-----l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L-~~iip~L~ 985 (1049)
|....|.+.|..++..++.+-.-.. + +..|..++...+.-.+..+++++..+... +.+.+..+. ..+++.+.
T Consensus 130 ~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~-S~~~~~~~~~sgll~~ll 208 (503)
T PF10508_consen 130 DPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH-SPEAAEAVVNSGLLDLLL 208 (503)
T ss_pred CCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc-CHHHHHHHHhccHHHHHH
Confidence 9999999999999999986522111 2 44455555544555666777877777643 444443222 24889999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhhhc
Q 001582 986 EAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLER 1020 (1049)
Q Consensus 986 ~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l~~ 1020 (1049)
+.+.+.|.-|+.+|+.++..+.. .+.-..||.+
T Consensus 209 ~eL~~dDiLvqlnalell~~La~--~~~g~~yL~~ 241 (503)
T PF10508_consen 209 KELDSDDILVQLNALELLSELAE--TPHGLQYLEQ 241 (503)
T ss_pred HHhcCccHHHHHHHHHHHHHHHc--ChhHHHHHHh
Confidence 99999999999999999998876 4444566644
No 52
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.85 E-value=0.0073 Score=74.39 Aligned_cols=152 Identities=21% Similarity=0.293 Sum_probs=114.8
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhH
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 897 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~ 897 (1049)
++.++..+.... -.++.--+..|..++..-.......+|..|++.|++.|.=++..||..++.+|..++...+..+.
T Consensus 869 vP~l~~~~~t~~---~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 869 VPILVSKFETAP---GSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HHHHHHHhccCC---ccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 455555554222 34666677777777764344566678999999999999999999999999999999998888899
Q ss_pred HHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHH
Q 001582 898 DSVEIVIEKLLHVTKDAV---PKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELM 974 (1049)
Q Consensus 898 ~~~e~lLp~Ll~~~~Ds~---~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~ 974 (1049)
.|+..++|+++..-.|++ -.||..|.+|+..+.+..|+.. |.
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~-----------------------------------l~ 990 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS-----------------------------------LL 990 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc-----------------------------------cc
Confidence 999999999999888765 4667777777776666555433 33
Q ss_pred hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001582 975 AQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1007 (1049)
Q Consensus 975 ~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~ 1007 (1049)
..-|.++-+|.++++|.+--|||.|+.|=-.-|
T Consensus 991 ~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 991 SFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred cccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 334566678899999999999999999864433
No 53
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.84 E-value=0.058 Score=61.35 Aligned_cols=191 Identities=18% Similarity=0.163 Sum_probs=129.9
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcC--c
Q 001582 422 LSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCR--K 499 (1049)
Q Consensus 422 l~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~--~ 499 (1049)
|.++|. .+.++.=+.|.+||+.|.++|...-. ..+|......|++.+.+-++-...+=...++.+++.++..+| .
T Consensus 45 L~~~Id--~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAID--LLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHH--HHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence 667777 56788899999999999999986442 445545566788888888877667778889999999988865 7
Q ss_pred chHHHHHHHHHHHHHHhcCCchh--hhHHHHHHHHHHHhh--cCCcch------HHHHHHhh-cc--CC--------CHH
Q 001582 500 PFESYMERILPHVFSRLIDPKEL--VRQPCSTTLDIVSKT--YSVDSL------LPALLRSL-DE--QR--------SPK 558 (1049)
Q Consensus 500 ~~~~~l~~lL~~ll~klgD~k~~--vR~~a~~~L~~~~e~--~~~d~~------l~~L~r~l-~~--~~--------~pk 558 (1049)
+-+.+...+.|.|..-+.|.-.. +|.+|..||.++.=. ...+.. |..++... .. .. ++.
T Consensus 122 ~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 122 DSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred cHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 88899999999888888765443 566777777776522 222222 22222111 11 11 234
Q ss_pred HHHH-HHHHHHHHhhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHHhc
Q 001582 559 AKLA-VIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHY 620 (1049)
Q Consensus 559 vk~~-~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~h~ 620 (1049)
+..+ +-.|. .|.. .++...+ ...+...++++..+++-.+.+||-+|-.+|.-||...
T Consensus 202 l~~aAL~aW~--lLlt-~~~~~~~--~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 202 LVAAALSAWA--LLLT-TLPDSKL--EDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHHHHHHH--HHHh-cCCHHHH--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 4444 44564 2332 1222111 1345677889999999899999999999999999764
No 54
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.76 E-value=0.009 Score=56.77 Aligned_cols=104 Identities=19% Similarity=0.265 Sum_probs=82.1
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCc-------hhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHh
Q 001582 903 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP-------FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMA 975 (1049)
Q Consensus 903 lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p-------~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~ 975 (1049)
+++.|++.+.+....++..+-.|+..++...+. ..+++.+.+++.+.+.+.+..|+.+|..+....+ .....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE-DNKLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH-HHHHH
Confidence 678888888888889999999999888865322 2578888888888888999999999999986542 22222
Q ss_pred hh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001582 976 QL-PSFLPALFEAFGNQSADVRKTVVFCLVDIY 1007 (1049)
Q Consensus 976 ~L-~~iip~L~~~~~D~~seVRKaAv~clv~l~ 1007 (1049)
.. ..+++.+.+.+++.+.+||+.+..++..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22 347899999999999999999999998765
No 55
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=96.75 E-value=0.03 Score=56.05 Aligned_cols=111 Identities=18% Similarity=0.269 Sum_probs=81.3
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHH--HH
Q 001582 430 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ER 507 (1049)
Q Consensus 430 ~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l--~~ 507 (1049)
.+...||. +...|=.++..... .-++.+.++++++...|.+|+..||..|-.++..||..|+..+ +.
T Consensus 13 ~l~~~dw~----~ileicD~In~~~~-------~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~ 81 (139)
T cd03567 13 SNREEDWE----AIQAFCEQINKEPE-------GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFR 81 (139)
T ss_pred cCCCCCHH----HHHHHHHHHHcCCc-------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHH
Confidence 45677786 34444455544321 2357889999999999999999999999999999999997554 34
Q ss_pred HHHHHHHHhc------CCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhh
Q 001582 508 ILPHVFSRLI------DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSL 551 (1049)
Q Consensus 508 lL~~ll~klg------D~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l 551 (1049)
++..|++.+. .....|++++...|..|.+.|+.+..+...+..|
T Consensus 82 Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~~L 131 (139)
T cd03567 82 FLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPKIKEAYDML 131 (139)
T ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 5555555553 2557899999999999999998665555544443
No 56
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.72 E-value=0.0037 Score=51.87 Aligned_cols=55 Identities=24% Similarity=0.363 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001582 951 EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1006 (1049)
Q Consensus 951 ~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l 1006 (1049)
|+.+..|+..|+.+.+. ..+.+..+++.++|.|..++.|.+++||.+|+.||..|
T Consensus 1 p~vR~~A~~aLg~l~~~-~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEG-CPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTT-THHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcc-cHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 56778888888885544 46777889999999999999999999999999998643
No 57
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.71 E-value=0.35 Score=61.81 Aligned_cols=94 Identities=23% Similarity=0.382 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCc----chHHHHHHHHHHH
Q 001582 437 CARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRK----PFESYMERILPHV 512 (1049)
Q Consensus 437 keR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~----~~~~~l~~lL~~l 512 (1049)
..|.+||+-|+.+-..-. .+ ..|++++.-|.-.+.|+-.+|-..||+||.+++..-++ +-.=|.+.|+|+|
T Consensus 438 ~tK~~ALeLl~~lS~~i~---de--~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYID---DE--VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred hhHHHHHHHHHHHhhhcc---hH--HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 457889888877665422 23 36899999999999999999999999999999977653 2335566677777
Q ss_pred HHHhcC-CchhhhHHHHHHHHHHH
Q 001582 513 FSRLID-PKELVRQPCSTTLDIVS 535 (1049)
Q Consensus 513 l~klgD-~k~~vR~~a~~~L~~~~ 535 (1049)
-.-+.| .-..||-+-..+|-.++
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA 536 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLA 536 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHH
Confidence 777778 77778777777766655
No 58
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.65 E-value=0.011 Score=56.04 Aligned_cols=104 Identities=19% Similarity=0.214 Sum_probs=78.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCch----
Q 001582 862 ILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVE-IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF---- 936 (1049)
Q Consensus 862 lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e-~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~---- 936 (1049)
++..|++.|.+.+..++..++.+|..|+.........+.+ .+++.+++.+.|+...|+..+-.++..|+...+..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 4566888888888999999999999999875554555555 78999999999999999999999999998765331
Q ss_pred ---hhHHhhhhhhcccchhHHHHHHHHHHHHH
Q 001582 937 ---RCLSVIVPLLVTEDEKTLVTCINCLTKLV 965 (1049)
Q Consensus 937 ---~~l~vL~p~l~s~~~~t~~~al~~L~~li 965 (1049)
.+++.+...+...+..++..++.+|..+.
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 24566666666666666666666665543
No 59
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.64 E-value=0.0025 Score=46.55 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001582 980 FLPALFEAFGNQSADVRKTVVFCLVDIYIM 1009 (1049)
Q Consensus 980 iip~L~~~~~D~~seVRKaAv~clv~l~~~ 1009 (1049)
|+|.+.++++|++++||.+|++|+..++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999998764
No 60
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.60 E-value=0.017 Score=60.22 Aligned_cols=134 Identities=22% Similarity=0.317 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHH-----------HH-HhCCCcHHHHHHHHHHHHHHHhhcCch-------
Q 001582 877 VREVALSLINEMLKN-QKDVMEDSVEIVIEKL-----------LH-VTKDAVPKVSNEAEHCLTVVLSQYDPF------- 936 (1049)
Q Consensus 877 vr~~AL~~L~~L~~~-~~~~~~~~~e~lLp~L-----------l~-~~~Ds~~~Vr~aA~~~l~~i~~~~~p~------- 936 (1049)
||..||.+|..|++. .+..|-.|-..++|.- +. ...|+...||.+|..++..|+....+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 789999999999998 4555667777777765 32 236999999999999999998664322
Q ss_pred -------------------hhHHhhhhhhcc-cchhHHHHHHHHHHHHHhhcCHHHHH-hhhhhHHHHHHHHhcCCCHHH
Q 001582 937 -------------------RCLSVIVPLLVT-EDEKTLVTCINCLTKLVGRLSQEELM-AQLPSFLPALFEAFGNQSADV 995 (1049)
Q Consensus 937 -------------------~~l~vL~p~l~s-~~~~t~~~al~~L~~lie~~~~~~l~-~~L~~iip~L~~~~~D~~seV 995 (1049)
.+-..|.-.|.. .+.++...++|++..+++..+-+-+. ..++.++..+...+.+.|++|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 011222223322 34566778899999999877766663 457888889999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 001582 996 RKTVVFCLVDIYIML 1010 (1049)
Q Consensus 996 RKaAv~clv~l~~~l 1010 (1049)
|-++..||..+..+.
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999998776543
No 61
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=96.56 E-value=0.036 Score=55.53 Aligned_cols=107 Identities=17% Similarity=0.312 Sum_probs=77.3
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHH--HH
Q 001582 430 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ER 507 (1049)
Q Consensus 430 ~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l--~~ 507 (1049)
...+.||. +...|-..+.... ..-++.+.+|.++|...|.+|+..+|..|-.++..||..|+..+ +.
T Consensus 17 ~~~~~Dw~----~~l~icD~i~~~~-------~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~ 85 (140)
T PF00790_consen 17 SLPSPDWS----LILEICDLINSSP-------DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKE 85 (140)
T ss_dssp TSSS--HH----HHHHHHHHHHTST-------THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHH
T ss_pred CCCCCCHH----HHHHHHHHHHcCC-------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHH
Confidence 44667884 4555666676542 25688999999999999999999999999999999999997654 33
Q ss_pred HHHHHHHHhcC-Cch---hhhHHHHHHHHHHHhhcCCcchHHHH
Q 001582 508 ILPHVFSRLID-PKE---LVRQPCSTTLDIVSKTYSVDSLLPAL 547 (1049)
Q Consensus 508 lL~~ll~klgD-~k~---~vR~~a~~~L~~~~e~~~~d~~l~~L 547 (1049)
++..|.+.+.+ ..+ .||+++.+.|..|.+.|..+-.+..+
T Consensus 86 fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i 129 (140)
T PF00790_consen 86 FLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLI 129 (140)
T ss_dssp HHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHH
T ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHH
Confidence 44444443322 122 29999999999999999766555444
No 62
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=96.56 E-value=0.26 Score=57.60 Aligned_cols=202 Identities=18% Similarity=0.310 Sum_probs=132.5
Q ss_pred hhHHHHHHHHHHHHHhcCCcc----chHHhHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHhhh--hhhH-H
Q 001582 833 PTSKHGALQQLIKASVANDHS----IWTKYFNQILTAVLEVLDD-------ADSSVREVALSLINEMLKNQK--DVME-D 898 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~----~w~~~f~~lL~~Ll~~L~D-------~n~~vr~~AL~~L~~L~~~~~--~~~~-~ 898 (1049)
-++|.+|...|.+.++..+.. ...+++..++..+..-+.. .+..+..+||++|..++.+.. ..+. +
T Consensus 7 ~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d 86 (372)
T PF12231_consen 7 RSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDD 86 (372)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChH
Confidence 468999999999998766422 2344455555544443322 256788899999999886432 2222 3
Q ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhhcCch--------hhHHhhhhhhc-ccchhHHHHHHHHHHHHHhh
Q 001582 899 SVEIVIEKLLHVTK--DAVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLV-TEDEKTLVTCINCLTKLVGR 967 (1049)
Q Consensus 899 ~~e~lLp~Ll~~~~--Ds~~~Vr~aA~~~l~~i~~~~~p~--------~~l~vL~p~l~-s~~~~t~~~al~~L~~lie~ 967 (1049)
+..-++-..++.+. ...|.+...+..|+.. +.+++. +++.++..+-. -...-+..+.+.++.+++.+
T Consensus 87 ~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q 164 (372)
T PF12231_consen 87 FASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQ 164 (372)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHH
Confidence 44446777777764 4457888887777763 445553 22222211111 01112345678888899988
Q ss_pred cCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh--hH----HHhhhcCChhhHHHHHHHHHHhhh
Q 001582 968 LSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK--AF----LPYLERLNSTQLRLVTIYANRISQ 1038 (1049)
Q Consensus 968 ~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe--~l----~p~l~~L~~s~~kLL~~yi~R~~~ 1038 (1049)
. ++.+..+....+|.++..+-+...++|..|..+...+-.++|. .+ ...+..-.... ++++.|.+|..+
T Consensus 165 ~-p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~L~~ 239 (372)
T PF12231_consen 165 F-PQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG-KLIQLYCERLKE 239 (372)
T ss_pred H-HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc-cHHHHHHHHHHH
Confidence 7 4667778888999999999999999999999999999999984 22 23343333334 889999888754
No 63
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.53 E-value=0.032 Score=67.61 Aligned_cols=139 Identities=17% Similarity=0.239 Sum_probs=101.1
Q ss_pred HHHHHHHHHhhhhhhHHH-HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHH
Q 001582 882 LSLINEMLKNQKDVMEDS-VEIVIEKLLHVT--KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCI 958 (1049)
Q Consensus 882 L~~L~~L~~~~~~~~~~~-~e~lLp~Ll~~~--~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al 958 (1049)
....+.|.+.....-+++ ...++|.|+..+ +|..+.+..-.-.+.+.+-..-=..+++++|++++..-+.++|+.-|
T Consensus 272 ~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL 351 (690)
T KOG1243|consen 272 QKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLL 351 (690)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHH
Confidence 345555554433333344 446788888765 66556666655555544433221235889999999998899998888
Q ss_pred HHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-----hHHHhhhcCCh
Q 001582 959 NCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-----AFLPYLERLNS 1023 (1049)
Q Consensus 959 ~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe-----~l~p~l~~L~~ 1023 (1049)
.-+.+.++++.++++ ...|+|.++.++.|+++-+|...+.||..+...+++ |+.+||..+-+
T Consensus 352 ~~i~~~i~~Lt~~~~---~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~ 418 (690)
T KOG1243|consen 352 QYIEKYIDHLTKQIL---NDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQP 418 (690)
T ss_pred HhHHHHhhhcCHHhh---cchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCc
Confidence 888899999987776 367889999999999999999999999999888773 57788876554
No 64
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.43 E-value=0.055 Score=63.71 Aligned_cols=182 Identities=14% Similarity=0.175 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCc
Q 001582 836 KHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAV 915 (1049)
Q Consensus 836 R~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~ 915 (1049)
|.-+...+..+++.|.-+ +.+.++..+...+.|-.-.-..-+...|+.|+-..+..+.-|+.-+...|++ ...
T Consensus 354 r~IstyAITtLLKTGt~e----~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~---eGg 426 (898)
T COG5240 354 RTISTYAITTLLKTGTEE----TIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ---EGG 426 (898)
T ss_pred ccchHHHHHHHHHcCchh----hHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh---ccc
Confidence 445666777778777644 3444555555555442222222334444555544455555554444444433 333
Q ss_pred HHHHHHHHHHHHHHHhhcCc--hhhHHhhhhhhcccchhH-------------------------------------HHH
Q 001582 916 PKVSNEAEHCLTVVLSQYDP--FRCLSVIVPLLVTEDEKT-------------------------------------LVT 956 (1049)
Q Consensus 916 ~~Vr~aA~~~l~~i~~~~~p--~~~l~vL~p~l~s~~~~t-------------------------------------~~~ 956 (1049)
-+..+++.+++.-+++..|- ++.+..|+.+|....|+. |.+
T Consensus 427 ~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsa 506 (898)
T COG5240 427 LEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSA 506 (898)
T ss_pred chHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHH
Confidence 45555555555555554432 245566666665444432 223
Q ss_pred HHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHH-----hhhcCChhhHHHH
Q 001582 957 CINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLP-----YLERLNSTQLRLV 1029 (1049)
Q Consensus 957 al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p-----~l~~L~~s~~kLL 1029 (1049)
|+.+|++..-...... .-..+.-.+.+|++|+|-+||..|-+.+-.+- ..+++.| +|+.+..-.++|+
T Consensus 507 Av~aLskf~ln~~d~~---~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~--~~da~~pl~~sd~~~dipsle~~l~ 579 (898)
T COG5240 507 AVQALSKFALNISDVV---SPQSVENALKRCLNDQDDEVRDRASFLLRNMR--LSDACEPLFSSDELGDIPSLELELI 579 (898)
T ss_pred HHHHHHHhccCccccc---cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh--hhhhhhccccccccCCcchhHHhhh
Confidence 3333333221111000 01245566889999999999999999987654 4456666 4455655555554
No 65
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.1 Score=63.89 Aligned_cols=194 Identities=16% Similarity=0.217 Sum_probs=122.1
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhh-----------------
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV----------------- 895 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~----------------- 895 (1049)
+--|+.|+..+..+++...-. .++ ++...-..|.++++.|...++.++.+||+.....
T Consensus 156 ~~irKKA~Lca~r~irK~P~l--~e~---f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~ 230 (866)
T KOG1062|consen 156 PYIRKKAALCAVRFIRKVPDL--VEH---FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQ 230 (866)
T ss_pred HHHHHHHHHHHHHHHHcCchH--HHH---hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777543211 122 3445666778888888888888888888752221
Q ss_pred ---------------hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchh---------hHHhhhhh------
Q 001582 896 ---------------MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR---------CLSVIVPL------ 945 (1049)
Q Consensus 896 ---------------~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~---------~l~vL~p~------ 945 (1049)
-+||+-.-|..+|..+|...+...+..-..|..+++.++-.+ |+..|+.+
T Consensus 231 l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~L 310 (866)
T KOG1062|consen 231 LTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGL 310 (866)
T ss_pred HhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchH
Confidence 135555566677777777777777777777888877665432 33333322
Q ss_pred -----------hcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-----
Q 001582 946 -----------LVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM----- 1009 (1049)
Q Consensus 946 -----------l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~----- 1009 (1049)
+.+.+..++-.+|++|.++|.. .+..+.+|- ..+.+|+.|+|..+|+-|....-.+..-
T Consensus 311 rvlainiLgkFL~n~d~NirYvaLn~L~r~V~~-d~~avqrHr----~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~ 385 (866)
T KOG1062|consen 311 RVLAINILGKFLLNRDNNIRYVALNMLLRVVQQ-DPTAVQRHR----STILECLKDPDVSIKRRALELSYALVNESNVRV 385 (866)
T ss_pred HHHHHHHHHHHhcCCccceeeeehhhHHhhhcC-CcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH
Confidence 2223334455666666666643 345555665 4579999999999999998877544321
Q ss_pred hhhhHHHhhhcCChhhHHHHHHHHHHh
Q 001582 1010 LGKAFLPYLERLNSTQLRLVTIYANRI 1036 (1049)
Q Consensus 1010 lGe~l~p~l~~L~~s~~kLL~~yi~R~ 1036 (1049)
+=+++.-||..-++.-+..+-.+|.-+
T Consensus 386 mv~eLl~fL~~~d~~~k~~~as~I~~l 412 (866)
T KOG1062|consen 386 MVKELLEFLESSDEDFKADIASKIAEL 412 (866)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 124667788777665555566665443
No 66
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=96.41 E-value=0.071 Score=53.71 Aligned_cols=105 Identities=14% Similarity=0.211 Sum_probs=78.1
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHH--HH
Q 001582 430 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ER 507 (1049)
Q Consensus 430 ~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l--~~ 507 (1049)
.+...||. ....|-..+.... ..-++.+.+++++|...|.+|+..+|..|..++..||..|+..+ +.
T Consensus 12 ~l~~~dw~----~il~icD~I~~~~-------~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~ 80 (144)
T cd03568 12 KLTSENWG----LILDVCDKVKSDE-------NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRD 80 (144)
T ss_pred cCCCcCHH----HHHHHHHHHhcCC-------ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHH
Confidence 45667884 4444445555432 23478999999999999999999999999999999999997443 34
Q ss_pred HHHHHHHHhcC-CchhhhHHHHHHHHHHHhhcCCcchHH
Q 001582 508 ILPHVFSRLID-PKELVRQPCSTTLDIVSKTYSVDSLLP 545 (1049)
Q Consensus 508 lL~~ll~klgD-~k~~vR~~a~~~L~~~~e~~~~d~~l~ 545 (1049)
++..|.+.+.+ ....|+.++...+..|.+.|..+..+.
T Consensus 81 Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~ 119 (144)
T cd03568 81 FTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLS 119 (144)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccH
Confidence 44444444444 677899999999999999998765443
No 67
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.31 E-value=0.14 Score=62.02 Aligned_cols=184 Identities=20% Similarity=0.246 Sum_probs=114.8
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHHH
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHV 910 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~--~e~lLp~Ll~~ 910 (1049)
-..|...++-|..++. +.....+..|+.|...++.+|.|..+.||.+|+-+|..+=. ..-++- +-.++-.+|+
T Consensus 99 k~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~---d~~dee~~v~n~l~~liq- 173 (892)
T KOG2025|consen 99 KKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG---DPKDEECPVVNLLKDLIQ- 173 (892)
T ss_pred hhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc---CCCCCcccHHHHHHHHHh-
Confidence 4689999987666664 44455567899999999999999999999999888877642 222211 2223333332
Q ss_pred hCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHH-HHHHHHHhhcCHHHHHhhhhhHHHHHHHHhc
Q 001582 911 TKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCI-NCLTKLVGRLSQEELMAQLPSFLPALFEAFG 989 (1049)
Q Consensus 911 ~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al-~~L~~lie~~~~~~l~~~L~~iip~L~~~~~ 989 (1049)
-|+.++||++|..++.. ++ ..+++++.--+..+...|.+.. .+|.++ +..... ....+--+-++++
T Consensus 174 -nDpS~EVRRaaLsnI~v-----dn-sTlp~IveRarDV~~anRrlvY~r~lpki--d~r~ls----i~krv~LlewgLn 240 (892)
T KOG2025|consen 174 -NDPSDEVRRAALSNISV-----DN-STLPCIVERARDVSGANRRLVYERCLPKI--DLRSLS----IDKRVLLLEWGLN 240 (892)
T ss_pred -cCCcHHHHHHHHHhhcc-----Cc-ccchhHHHHhhhhhHHHHHHHHHHhhhhh--hhhhhh----HHHHHHHHHHhhh
Confidence 69999999998877641 12 2344444433333333333333 222222 111112 2344456789999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhh-hHHHhhhcCCh-----hhHHHHHHHHH
Q 001582 990 NQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNS-----TQLRLVTIYAN 1034 (1049)
Q Consensus 990 D~~seVRKaAv~clv~l~~~lGe-~l~p~l~~L~~-----s~~kLL~~yi~ 1034 (1049)
|++-+||+|++..+..=|.-+-+ .+.-.|..|+- .-.+.|+..++
T Consensus 241 DRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 241 DREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred hhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 99999999999999877766665 45555555543 34566666665
No 68
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.19 E-value=4.3 Score=48.63 Aligned_cols=141 Identities=13% Similarity=0.202 Sum_probs=96.1
Q ss_pred HHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHH
Q 001582 843 LIKASVANDHSIWTKYFNQILTAVLEVLDDADSS-VREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNE 921 (1049)
Q Consensus 843 L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~-vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~a 921 (1049)
|..+|+....++ ...=++|+..++.+|+.+++. +-.-.+..|..|...++.+|+.|++.++|.+..++......|.
T Consensus 580 l~aiir~~~~~i-e~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~-- 656 (858)
T COG5215 580 LEAIIRTRRRDI-EDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVL-- 656 (858)
T ss_pred HHHHHHhcCCCc-ccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHH--
Confidence 444555544432 123456788888888877544 5566788899999999999999999999999987744322333
Q ss_pred HHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcC--CCHHHHHHH
Q 001582 922 AEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN--QSADVRKTV 999 (1049)
Q Consensus 922 A~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D--~~seVRKaA 999 (1049)
..++.+++.+...++.+- ...-+.+|..|++++.+ .+-+++-+.
T Consensus 657 ---------------------------------~~avglvgdlantl~~df-~~y~d~~ms~LvQ~lss~~~~R~lKPai 702 (858)
T COG5215 657 ---------------------------------NSAVGLVGDLANTLGTDF-NIYADVLMSSLVQCLSSEATHRDLKPAI 702 (858)
T ss_pred ---------------------------------HHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcChhhccccchHH
Confidence 334445555555554333 24455666777777764 455677888
Q ss_pred HHHHHHHHHHhhhhHHHhhhc
Q 001582 1000 VFCLVDIYIMLGKAFLPYLER 1020 (1049)
Q Consensus 1000 v~clv~l~~~lGe~l~p~l~~ 1020 (1049)
.-|+..|...+|.+|.+||..
T Consensus 703 LSvFgDIAlaiga~F~~YL~~ 723 (858)
T COG5215 703 LSVFGDIALAIGANFESYLDM 723 (858)
T ss_pred HHHHHHHHHHHhhhHHHHHHH
Confidence 888888888899888888764
No 69
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.17 E-value=0.059 Score=68.57 Aligned_cols=176 Identities=15% Similarity=0.155 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHHHHhcCCccchHH--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 001582 834 TSKHGALQQLIKASVANDHSIWTK--YFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT 911 (1049)
Q Consensus 834 ~eR~~aL~~L~~li~~~~~~~w~~--~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~ 911 (1049)
.+|+.|...|..+.+-.+.....+ +|.++|..-+.-..|.+ +--...+.++..++-.++..+.+ +-..+|.++.+.
T Consensus 748 ~errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~-d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~ 825 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGN-DEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFV 825 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCC-cchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhc
Confidence 367777777776665554433221 33333333333333444 12223466677777666777777 667899999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcCch---hhHHhhhhhhcccchhH-HHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHH
Q 001582 912 KDAVPKVSNEAEHCLTVVLSQYDPF---RCLSVIVPLLVTEDEKT-LVTCINCLTKLVGRLSQEELMAQLPSFLPALFEA 987 (1049)
Q Consensus 912 ~Ds~~~Vr~aA~~~l~~i~~~~~p~---~~l~vL~p~l~s~~~~t-~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~ 987 (1049)
...+..||.++..|+..+.+...-+ .|+..++|++..-+.-. +.++.+.+. ++.....-.+....+-++|.|..+
T Consensus 826 ~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~-~l~~~l~~~l~~~~~Llv~pllr~ 904 (1549)
T KOG0392|consen 826 RSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIE-LLDAVLMVGLVPYNPLLVVPLLRR 904 (1549)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHH-HHHHhhcccccccceeehhhhhcc
Confidence 9999999999999999998775554 46666677775432222 233333333 332333344456778899999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhhh
Q 001582 988 FGNQSADVRKTVVFCLVDIYIMLGK 1012 (1049)
Q Consensus 988 ~~D~~seVRKaAv~clv~l~~~lGe 1012 (1049)
+.|....||.+|-.|+..+.-+++.
T Consensus 905 msd~~d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 905 MSDQIDSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred cccchHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999988875
No 70
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=0.15 Score=61.71 Aligned_cols=180 Identities=17% Similarity=0.259 Sum_probs=102.8
Q ss_pred CCHHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhh
Q 001582 816 PSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV 895 (1049)
Q Consensus 816 ~~I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~ 895 (1049)
|+-++++..|+... +=.|+.|+-.|..+... -++. +..-++-|.+-|+|+++.|+-+|..++-+|++..+..
T Consensus 144 DLa~Dv~tLL~ssk---pYvRKkAIl~lykvFLk-YPeA----lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 144 DLADDVFTLLNSSK---PYVRKKAILLLYKVFLK-YPEA----LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred HHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHh-hhHh----HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 33577887776542 56788888877775421 1222 3333456788889999999999999999999876654
Q ss_pred hHHH----HHH--------HHHHHHHHhCC-----C--cHH-------------HHHHHHHHHHHHHhh-----c-Cc--
Q 001582 896 MEDS----VEI--------VIEKLLHVTKD-----A--VPK-------------VSNEAEHCLTVVLSQ-----Y-DP-- 935 (1049)
Q Consensus 896 ~~~~----~e~--------lLp~Ll~~~~D-----s--~~~-------------Vr~aA~~~l~~i~~~-----~-~p-- 935 (1049)
+-++ +++ +|-+||..++. + .++ ...-.-+|+++++.. . +-
T Consensus 216 yL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~a 295 (877)
T KOG1059|consen 216 YLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSA 295 (877)
T ss_pred cccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHH
Confidence 3222 111 23344443331 1 011 111233455555544 1 00
Q ss_pred --hhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001582 936 --FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1011 (1049)
Q Consensus 936 --~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lG 1011 (1049)
..|+.-|-.++...+-.-+-.++-+|.++...++ ..+..|. ..+.+|++|.|..+|--|...+ |.++.
T Consensus 296 siqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp-~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl---~gmVs 365 (877)
T KOG1059|consen 296 SIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHP-KAVQAHK----DLILRCLDDKDESIRLRALDLL---YGMVS 365 (877)
T ss_pred HHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCH-HHHHHhH----HHHHHHhccCCchhHHHHHHHH---HHHhh
Confidence 1133333333333333333344455556665553 4444444 3479999999999999999887 44454
No 71
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.05 E-value=0.11 Score=66.05 Aligned_cols=191 Identities=19% Similarity=0.229 Sum_probs=124.0
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHH
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK----DVMEDSVEIVIEKLL 908 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~----~~~~~~~e~lLp~Ll 908 (1049)
.+.+.+||+-|+.+...-.-+ .-++++|+-++..+.|+...||..||.+|.+++.... ....-|-|.++|.|=
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de---~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~ 513 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDE---VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLN 513 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchH---HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhH
Confidence 567899999888876543322 3578999999999999999999999999999986443 223456778899999
Q ss_pred HHhCC-CcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcc---cchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHH
Q 001582 909 HVTKD-AVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVT---EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPAL 984 (1049)
Q Consensus 909 ~~~~D-s~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s---~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L 984 (1049)
+..-| ...-||-+-..||..++... .+.+.. ..-+.. -+.+... ...+.....++......+-..+
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA--~rFle~-~q~~~~~g~~n~~nse-------t~~~~~~~~~~~~L~~~V~~~v 583 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTA--YRFLEL-TQELRQAGMLNDPNSE-------TAPEQNYNTELQALHHTVEQMV 583 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHH--HHHHHH-HHHHHhcccccCcccc-------cccccccchHHHHHHHHHHHHH
Confidence 88888 55666666677888777542 111111 000000 0001000 0111222233333334444455
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhhh----h-HHHhh-hcCChhhHHHHHHHHHHh
Q 001582 985 FEAFGNQSADVRKTVVFCLVDIYIMLGK----A-FLPYL-ERLNSTQLRLVTIYANRI 1036 (1049)
Q Consensus 985 ~~~~~D~~seVRKaAv~clv~l~~~lGe----~-l~p~l-~~L~~s~~kLL~~yi~R~ 1036 (1049)
...+.|.++-||.+-+..+..+|.-||. | +++|| .=|++.+-.|=-.+++..
T Consensus 584 ~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI 641 (1431)
T KOG1240|consen 584 SSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSI 641 (1431)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhc
Confidence 6667788899999999999999999983 4 66776 557777777766666554
No 72
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.02 E-value=0.034 Score=50.27 Aligned_cols=85 Identities=25% Similarity=0.373 Sum_probs=66.9
Q ss_pred HHHHHHHh-CCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHH
Q 001582 904 IEKLLHVT-KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLP 982 (1049)
Q Consensus 904 Lp~Ll~~~-~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip 982 (1049)
||.|++.+ .|+...|+..|..++. .+....+++.|...+.+.++.++..|+..|+.+ + -+..++
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~----~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~-------~~~~~~ 65 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG----ELGDPEAIPALIELLKDEDPMVRRAAARALGRI----G-------DPEAIP 65 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH----CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----H-------HHHTHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH----HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----C-------CHHHHH
Confidence 57788877 8888999988777776 445568899999999888999999999887754 2 244667
Q ss_pred HHHHHhcC-CCHHHHHHHHHHH
Q 001582 983 ALFEAFGN-QSADVRKTVVFCL 1003 (1049)
Q Consensus 983 ~L~~~~~D-~~seVRKaAv~cl 1003 (1049)
.|.+.+.| .+..||.+|..+|
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhc
Confidence 88888876 5666799999887
No 73
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.01 E-value=0.29 Score=51.09 Aligned_cols=113 Identities=19% Similarity=0.287 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhh--cCchh-hHHhhhhhhcccc
Q 001582 874 DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ--YDPFR-CLSVIVPLLVTED 950 (1049)
Q Consensus 874 n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~--~~p~~-~l~vL~p~l~s~~ 950 (1049)
|+.||..++.++..|+...+.-+ +..+|.+..++.|+...||+.|-.++..++.. +.+.. ++..+.-.+...+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 46789999999999998665554 45578888899999999999999999988865 22222 3233444556677
Q ss_pred hhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcC
Q 001582 951 EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 990 (1049)
Q Consensus 951 ~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D 990 (1049)
..++..|..++..+.....++.+..++++++-.+..+..+
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~ 116 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEH 116 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCcccc
Confidence 8888889999999988867787878888877777666543
No 74
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.94 E-value=0.28 Score=58.25 Aligned_cols=181 Identities=13% Similarity=0.134 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCch--h
Q 001582 860 NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--R 937 (1049)
Q Consensus 860 ~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~--~ 937 (1049)
..++..++..++.++..||-.+|.+|+.+....+.-=+..+..++.+|.+.+=|..+.||..|.-|+..+-+-..-+ +
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 44566777778999999999999999999887766445667788999999999999999999999987766543332 3
Q ss_pred hHHhhhhhhccc-chhHHHHHHHHH-------HHHHhhcCHH-------HHHhhhhhH-----------HHHHHHHhcCC
Q 001582 938 CLSVIVPLLVTE-DEKTLVTCINCL-------TKLVGRLSQE-------ELMAQLPSF-----------LPALFEAFGNQ 991 (1049)
Q Consensus 938 ~l~vL~p~l~s~-~~~t~~~al~~L-------~~lie~~~~~-------~l~~~L~~i-----------ip~L~~~~~D~ 991 (1049)
...++..+++.. ....+..++-.+ ..++|+..-- .-..+||.+ +--+-.++.|+
T Consensus 170 ~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dR 249 (885)
T COG5218 170 IVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDR 249 (885)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcchhh
Confidence 444444444422 112222222111 1233333100 001223322 12467899999
Q ss_pred CHHHHHHHHHHHHHHHHHhhh-hHHHhhhcCChhhHHHHHHHHHHhhhcc
Q 001582 992 SADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLRLVTIYANRISQAR 1040 (1049)
Q Consensus 992 ~seVRKaAv~clv~l~~~lGe-~l~p~l~~L~~s~~kLL~~yi~R~~~~r 1040 (1049)
+-+||+|++.++..-|..--| .+.-.++.|+-+..+.+-..|+..=+.|
T Consensus 250 e~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik~~F~~R 299 (885)
T COG5218 250 EFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIKGVFEKR 299 (885)
T ss_pred hhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHHHHHhhc
Confidence 999999999999988876665 6888889999999888888887775554
No 75
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=95.92 E-value=0.043 Score=55.13 Aligned_cols=106 Identities=12% Similarity=0.295 Sum_probs=74.2
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHHHHhcCcchHHHH--H
Q 001582 430 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLD-DPHHKVAQAALSTLADIIPSCRKPFESYM--E 506 (1049)
Q Consensus 430 ~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~-Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l--~ 506 (1049)
.+...||.-=+ .|-..+.... ..-++.+.+++++|. ..|.+|+..+|..|-.++..||..|+..+ +
T Consensus 13 ~l~~~dw~~il----eicD~In~~~-------~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask 81 (141)
T cd03565 13 SLQSEDWGLNM----EICDIINETE-------DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKK 81 (141)
T ss_pred CCCCcCHHHHH----HHHHHHhCCC-------CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 45566776433 3334444322 134678899999997 57999999999999999999999998544 2
Q ss_pred HHHHH-HHHHhc---CCchhhhHHHHHHHHHHHhhcCCcchHHH
Q 001582 507 RILPH-VFSRLI---DPKELVRQPCSTTLDIVSKTYSVDSLLPA 546 (1049)
Q Consensus 507 ~lL~~-ll~klg---D~k~~vR~~a~~~L~~~~e~~~~d~~l~~ 546 (1049)
.++.. |.+.+. +....|+.++...+..|.+.|..+..++.
T Consensus 82 ~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~ 125 (141)
T cd03565 82 DFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTG 125 (141)
T ss_pred HhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchH
Confidence 44444 333332 34457999999999999999987754443
No 76
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=95.92 E-value=0.13 Score=51.71 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=74.8
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHH--HHH
Q 001582 431 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ERI 508 (1049)
Q Consensus 431 ~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l--~~l 508 (1049)
+...||.. ...|-.++.... ..-++.+.+++++|...|.+|+..||+.|..++..||..|+..+ +.+
T Consensus 17 l~~~dw~~----ileicD~In~~~-------~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~f 85 (142)
T cd03569 17 LGEPDLAS----ILEICDMIRSKD-------VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREF 85 (142)
T ss_pred cCccCHHH----HHHHHHHHhCCC-------CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHH
Confidence 35667753 333444444322 24578999999999999999999999999999999999887433 233
Q ss_pred HHHHHHHhc-CCchhhhHHHHHHHHHHHhhcCCcchHH
Q 001582 509 LPHVFSRLI-DPKELVRQPCSTTLDIVSKTYSVDSLLP 545 (1049)
Q Consensus 509 L~~ll~klg-D~k~~vR~~a~~~L~~~~e~~~~d~~l~ 545 (1049)
+..|.+.+. .....|+.++...+..|.+.|..+..++
T Consensus 86 l~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~ 123 (142)
T cd03569 86 MDELKDLIKTTKNEEVRQKILELIQAWALAFRNKPQLK 123 (142)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCcccH
Confidence 333333222 5667799999999999999998775433
No 77
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.26 Score=57.75 Aligned_cols=214 Identities=15% Similarity=0.159 Sum_probs=142.5
Q ss_pred HHHHHHHh-ccCCCCChhHHHHHHHHHHHHHhcCCccch-HHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhh
Q 001582 818 IPQILHLM-CNGNDGSPTSKHGALQQLIKASVANDHSIW-TKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV 895 (1049)
Q Consensus 818 I~~lL~~l-~~~~~~~~~eR~~aL~~L~~li~~~~~~~w-~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~ 895 (1049)
+..++.++ +.+.+..|.+|......+.++.+.. .+| ....+.++..+.....|++..+|..|+..|..++...++.
T Consensus 215 ~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~--~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~k 292 (533)
T KOG2032|consen 215 MGKILAQLLSSITSEKENGRITDIAFFAELKRPK--ELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDK 292 (533)
T ss_pred HHHHHhhcccccchhcccchHHHHHHHHHHhCcc--cccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHH
Confidence 33444443 3333333678888877777776544 333 1357778888888889999999999999999999988877
Q ss_pred hHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhh-------hhhcccchhHHHHHHHHHHHHHhh
Q 001582 896 MEDSVEIVIEKLLH-VTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIV-------PLLVTEDEKTLVTCINCLTKLVGR 967 (1049)
Q Consensus 896 ~~~~~e~lLp~Ll~-~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~-------p~l~s~~~~t~~~al~~L~~lie~ 967 (1049)
...|...++-.+|- .+.+..++|.-.+..|+..+.....-..+-.++. +++.+.+.+.+..++-+.+.|..-
T Consensus 293 v~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 293 VRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKL 372 (533)
T ss_pred HHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 77665556666664 4455668999999999998887765555444443 334456777888888888777644
Q ss_pred cC---HHHH-HhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-hhHHHhhhcCChhhHHHHHHHHH
Q 001582 968 LS---QEEL-MAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG-KAFLPYLERLNSTQLRLVTIYAN 1034 (1049)
Q Consensus 968 ~~---~~~l-~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lG-e~l~p~l~~L~~s~~kLL~~yi~ 1034 (1049)
.+ .+.. +.....+ ..+.-.++|.++-|-+|+.+.+-..|--++ +++..|++..-+..+-..+.+++
T Consensus 373 ~g~~~e~~Fte~v~k~~-~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn 443 (533)
T KOG2032|consen 373 AGGGWEEFFTEQVKKRL-APLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFYN 443 (533)
T ss_pred cCCCchhhhHHHHHhcc-ccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHH
Confidence 33 2222 2222233 234567899999999999998887777777 46667776443444444555543
No 78
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=95.84 E-value=0.19 Score=49.96 Aligned_cols=106 Identities=17% Similarity=0.264 Sum_probs=75.3
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHH--HH
Q 001582 430 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ER 507 (1049)
Q Consensus 430 ~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l--~~ 507 (1049)
.+...||.. ...|-.++.+.. ..-++.+.++.++|..+|.+|+..+|..|..++..||..|+..+ +.
T Consensus 12 ~l~~~dw~~----~l~icD~i~~~~-------~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~ 80 (133)
T smart00288 12 SLLEEDWEL----ILEICDLINSTP-------DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKE 80 (133)
T ss_pred CCCCcCHHH----HHHHHHHHhCCC-------ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHH
Confidence 455677753 333445554432 23478899999999999999999999999999999999997554 23
Q ss_pred HHHHHHHHhcCC--chhhhHHHHHHHHHHHhhcCCcchHHH
Q 001582 508 ILPHVFSRLIDP--KELVRQPCSTTLDIVSKTYSVDSLLPA 546 (1049)
Q Consensus 508 lL~~ll~klgD~--k~~vR~~a~~~L~~~~e~~~~d~~l~~ 546 (1049)
++..|.+.+.+. .+.|+.++...+..|.+.|..+.-++.
T Consensus 81 fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~~~~ 121 (133)
T smart00288 81 FLNELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPDLSQ 121 (133)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCCchH
Confidence 454444333322 222999999999999999975543433
No 79
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=6.2 Score=49.07 Aligned_cols=166 Identities=18% Similarity=0.183 Sum_probs=109.6
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Q 001582 431 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILP 510 (1049)
Q Consensus 431 ~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~ 510 (1049)
+...+=--|..|+..|-.++.++ .+..+-+.++..+.|.|.-|.+++|-.=-.+...-..-...|...+-+
T Consensus 109 ~t~~~d~yr~~AiR~L~~I~d~~---------m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqe 179 (865)
T KOG1078|consen 109 MTGKEDLYRAAAIRALCSIIDGT---------MLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQE 179 (865)
T ss_pred ccCCCcchhHHHHHHHHhhcCcc---------hhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhh
Confidence 34445556888888888888753 223344556778999999999999877777777777778899999888
Q ss_pred HHHHHhcCCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhcc-C-CCHHHHHHHHHHHHHHhhhhccCCCCCCChhhHH
Q 001582 511 HVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDE-Q-RSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILK 588 (1049)
Q Consensus 511 ~ll~klgD~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~-~-~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~ 588 (1049)
.+..... .+|-.|.-.|-.++..-... +.-|...+.. . +||-.+.-......+.+.+ ++ ....
T Consensus 180 a~~s~~~----m~QyHalglLyqirk~drla--~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~---~~------~~~s 244 (865)
T KOG1078|consen 180 AVNSDNI----MVQYHALGLLYQIRKNDRLA--VSKLVQKFTRGSLKSPLAVCMLIRIASELLKE---NQ------QADS 244 (865)
T ss_pred ccCcHHH----HHHHHHHHHHHHHHhhhHHH--HHHHHHHHccccccchhHHHHHHHHHHHHhhh---cc------cchh
Confidence 8776553 67888888888887643322 2333333322 2 6787777666666655533 11 1122
Q ss_pred HHHHhHccccCCCCHHHHHHHHHHHHHHHHhc
Q 001582 589 LWLAKLTPLVHDKNTKLKEAAITCIISVYTHY 620 (1049)
Q Consensus 589 ~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~h~ 620 (1049)
.....+=.|+-.|.--|---|..++..+|..+
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~ 276 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTN 276 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccC
Confidence 33444555777777777777777888888654
No 80
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.80 E-value=0.084 Score=59.73 Aligned_cols=193 Identities=12% Similarity=0.120 Sum_probs=149.1
Q ss_pred CHHHHHhcCCCCCCCh--HHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcC
Q 001582 421 SLSDALSEGLSPSSDW--CARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCR 498 (1049)
Q Consensus 421 ~l~e~l~~g~~~s~~W--keR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~ 498 (1049)
-+...|. .|=+..+ -.=..|||-.+.|++.... .....++.-....|...|.-+..+|=-.+|+++...+.-.+
T Consensus 54 ~v~krLa--qCL~P~LPsGVH~KaLevY~~IF~~ig~--~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~ 129 (307)
T PF04118_consen 54 QVSKRLA--QCLNPALPSGVHQKALEVYEYIFERIGP--DGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLG 129 (307)
T ss_pred HHHHHHH--HhcCCCCChHHHHHHHHHHHHHHHhcCH--HHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcc
Confidence 3455555 4544443 2356788888888875432 22235666666778888888888999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhcc--
Q 001582 499 KPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAM-- 576 (1049)
Q Consensus 499 ~~~~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~-- 576 (1049)
+.+...++.++..|+--|-|...-+.+.+.+.|+.+.+.++.+.....+.-.+. .||.+|..+|.|+...+.+...
T Consensus 130 ~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii--~sp~~Rl~al~~l~~~l~~~~~~~ 207 (307)
T PF04118_consen 130 PALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII--TSPSRRLGALNYLLRRLPKFQNDE 207 (307)
T ss_pred HHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh--cCcchhHHHHHHHHHhCCcccccc
Confidence 899999999999999999877888999999999999999999987777765555 6899999999999988876320
Q ss_pred ---CCCC--CCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHHh
Q 001582 577 ---NSEG--SGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTH 619 (1049)
Q Consensus 577 ---~~~~--~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~h 619 (1049)
..++ .....+-.+.+..+..+++|.|.=|++.+-..|+.-+-.
T Consensus 208 ~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~PL 255 (307)
T PF04118_consen 208 LSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFPL 255 (307)
T ss_pred cccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCCC
Confidence 0000 112245678888999999999999999999999887654
No 81
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=95.77 E-value=0.092 Score=52.16 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=75.1
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHH--HH
Q 001582 431 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME--RI 508 (1049)
Q Consensus 431 ~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~--~l 508 (1049)
+.+.||. +...|-.++.... ..-++.+.+++++|..+|.+|+..+|.+|-.++..||+.|+..+- .+
T Consensus 13 ~~~~D~~----~il~icd~I~~~~-------~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~f 81 (133)
T cd03561 13 LEEPDWA----LNLELCDLINLKP-------NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEF 81 (133)
T ss_pred cCCccHH----HHHHHHHHHhCCC-------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHH
Confidence 3456675 4444555665432 245789999999999999999999999999999999998964442 34
Q ss_pred HHHHHHHhcC---CchhhhHHHHHHHHHHHhhcCCc
Q 001582 509 LPHVFSRLID---PKELVRQPCSTTLDIVSKTYSVD 541 (1049)
Q Consensus 509 L~~ll~klgD---~k~~vR~~a~~~L~~~~e~~~~d 541 (1049)
+..|.+.+.. ....||.++...|..|.+.|+.+
T Consensus 82 l~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 82 LLELVKIAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4444433332 45679999999999999999976
No 82
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.62 E-value=0.3 Score=55.36 Aligned_cols=179 Identities=17% Similarity=0.163 Sum_probs=124.8
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHh-cC-CccchHHhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhhhh
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASV-AN-DHSIWTKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKD 894 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~-~~-~~~~w~~~f~~lL~~Ll~~L~D-~n~~vr~~AL~~L~~L~~~~~~ 894 (1049)
|...|..++...+ |.+-...|.+|.++++ .+ ...+.+ +=..+-+.|-..|.- -...|-..||++...|++..+.
T Consensus 12 v~k~L~~Fe~~~E--WAD~is~L~kL~k~lq~~~~~~~~IP-~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~ 88 (307)
T PF04118_consen 12 VEKALKSFESSSE--WADYISFLGKLLKALQNSNNQFPYIP-HKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGP 88 (307)
T ss_pred HHHHHHHhhhhhh--HHHHHHHHHHHHHHHhccCCCCceeC-cHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCH
Confidence 6777777766443 9999999999999998 33 333322 223344445555543 3456999999999999999874
Q ss_pred -hhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHH
Q 001582 895 -VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEEL 973 (1049)
Q Consensus 895 -~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l 973 (1049)
.+...+...+|.|+..+....-.|+- ..++++.+.+-.+++ .+
T Consensus 89 ~~L~~dl~i~~~GLfpl~~~asi~Vkp-----------------------------------~lL~i~e~~~lpL~~-~L 132 (307)
T PF04118_consen 89 DGLAQDLPIYSPGLFPLFSYASIQVKP-----------------------------------QLLDIYEKYYLPLGP-AL 132 (307)
T ss_pred HHHHhhcHHHHHHHHHHHHHHHHhhHH-----------------------------------HHHHHHHHHhcCccH-HH
Confidence 57777777888888777665333322 224444444445666 77
Q ss_pred HhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh-HHHh--hhcCChhhHHH-HHHHHHH
Q 001582 974 MAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKA-FLPY--LERLNSTQLRL-VTIYANR 1035 (1049)
Q Consensus 974 ~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~-l~p~--l~~L~~s~~kL-L~~yi~R 1035 (1049)
...++.++-++.-+++|..+|+-..+...+..++..+|++ ||.- +.-++....++ .-.|+.|
T Consensus 133 ~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~sp~~Rl~al~~l~~ 198 (307)
T PF04118_consen 133 RPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIITSPSRRLGALNYLLR 198 (307)
T ss_pred HHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 7888999999999999999999999999999999999985 6652 34444445554 4444444
No 83
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.56 E-value=0.027 Score=46.65 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001582 876 SVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTV 928 (1049)
Q Consensus 876 ~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~ 928 (1049)
.||..|+..|..|+...+..+.+|...++|.|+..+.|+...||.+|-.||..
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 58999999999998888888999999999999999999999999999888764
No 84
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=0.31 Score=58.24 Aligned_cols=171 Identities=16% Similarity=0.199 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHHHHHhcC-CccchHHhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHH
Q 001582 833 PTSKHGALQQLIKASVAN-DHSIWTKYFNQILTAVLEVLD-DADSSVREVALSLINEMLKNQKDVMEDSVE-IVIEKLLH 909 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~-~~~~w~~~f~~lL~~Ll~~L~-D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e-~lLp~Ll~ 909 (1049)
.+.+..+..++..++-.. .+..-..--..+++.+.+.|. +.++.++..|--+|..|+......-+.+++ ..+|.++.
T Consensus 80 ~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~ 159 (514)
T KOG0166|consen 80 PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ 159 (514)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH
Confidence 567888888888877443 322211112257777888885 667888989988999998644443333322 36788999
Q ss_pred HhCCCcHHHHHHHHHHHHHHHhhcCchh-------hHHhhhhhhcccc-hhHHHHHHHHHHHHHhhc-CHHHHHhhhhhH
Q 001582 910 VTKDAVPKVSNEAEHCLTVVLSQYDPFR-------CLSVIVPLLVTED-EKTLVTCINCLTKLVGRL-SQEELMAQLPSF 980 (1049)
Q Consensus 910 ~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~-------~l~vL~p~l~s~~-~~t~~~al~~L~~lie~~-~~~~l~~~L~~i 980 (1049)
+...+...|++.|.-++.-|+...+..+ .+.-|+.++...+ -....-+.-.|..+...- ++.. ...+..+
T Consensus 160 Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~-~~~v~~i 238 (514)
T KOG0166|consen 160 LLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPP-FDVVAPI 238 (514)
T ss_pred HhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCc-HHHHHHH
Confidence 9999999999999999999997765543 2222333333222 134444556666766544 3333 3567788
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Q 001582 981 LPALFEAFGNQSADVRKTVVFCLV 1004 (1049)
Q Consensus 981 ip~L~~~~~D~~seVRKaAv~clv 1004 (1049)
+|+|.+++.+.|.+|..-|+-++.
T Consensus 239 Lp~L~~ll~~~D~~Vl~Da~WAls 262 (514)
T KOG0166|consen 239 LPALLRLLHSTDEEVLTDACWALS 262 (514)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 899999999999999977777665
No 85
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=5.5 Score=49.47 Aligned_cols=173 Identities=16% Similarity=0.155 Sum_probs=113.1
Q ss_pred CHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcc
Q 001582 421 SLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKP 500 (1049)
Q Consensus 421 ~l~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~ 500 (1049)
-+...+. -|++.||..|-=|+..+..+= |..-.+.+++-+.+.+.|-+.-|-..+-..+..+-...++.
T Consensus 87 avnt~~k--D~~d~np~iR~lAlrtm~~l~---------v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~ 155 (734)
T KOG1061|consen 87 AVNTFLK--DCEDPNPLIRALALRTMGCLR---------VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDL 155 (734)
T ss_pred hhhhhhc--cCCCCCHHHHHHHhhceeeEe---------ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhh
Confidence 4566677 489999999998887654321 11234678899999999999988777777777666555443
Q ss_pred hHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhhcCC---cchHHHHHHhhccC---CCHHHHHHHHHHHHHHhhhh
Q 001582 501 FESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSV---DSLLPALLRSLDEQ---RSPKAKLAVIEFAISSLNKH 574 (1049)
Q Consensus 501 ~~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~---d~~l~~L~r~l~~~---~~pkvk~~~L~~l~~~l~~~ 574 (1049)
+++ ..++..|-.-+.|..+.|=+.|..+|..|.+.-+. -.+.+.+...+... -|-..++.+|+.++.++..
T Consensus 156 ~~~--~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~- 232 (734)
T KOG1061|consen 156 VED--SGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPK- 232 (734)
T ss_pred ccc--cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCC-
Confidence 332 23344444444599999999999999999987642 11112222211111 2567899999888764432
Q ss_pred ccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHH
Q 001582 575 AMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIIS 615 (1049)
Q Consensus 575 ~~~~~~~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ 615 (1049)
...++...+.++.++++--|+.|-=.|..++.-
T Consensus 233 --------d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 233 --------DSREAEDICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred --------CchhHHHHHHHhhhhhccCCcceEeehHHHHHH
Confidence 123566778888888888777766665555433
No 86
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.19 Score=57.81 Aligned_cols=117 Identities=16% Similarity=0.269 Sum_probs=101.1
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhh-hhhh
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ-KDVM 896 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~-~~~~ 896 (1049)
+.++|.++..+| ...|++||..|.+++.. .+.....+...++..+.+..-|.+..||.....++..+.-.. ...+
T Consensus 60 lkeLl~qlkHhN---akvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~ 135 (393)
T KOG2149|consen 60 LKELLSQLKHHN---AKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQ 135 (393)
T ss_pred HHHHHhhhcCch---HhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhh
Confidence 789999999998 57999999999999987 455556688889999999999999999999888888855433 3447
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhh
Q 001582 897 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRC 938 (1049)
Q Consensus 897 ~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~ 938 (1049)
.++...+++.+.-++.+....|+..+...+..++..|+|.-+
T Consensus 136 sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 136 SPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred cchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 888999999999999999999999999999999999998743
No 87
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=14 Score=47.20 Aligned_cols=161 Identities=14% Similarity=0.127 Sum_probs=105.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH---HHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCc---
Q 001582 862 ILTAVLEVLDDADSSVREVALSLINE---MLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP--- 935 (1049)
Q Consensus 862 lL~~Ll~~L~D~n~~vr~~AL~~L~~---L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p--- 935 (1049)
||.-....|.+++..+|.++|++|.. ++..+.+.+-|-+..+-|.+++++.+..+-++.-|-.|+..+...++-
T Consensus 804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~ 883 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVA 883 (1014)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHH
Confidence 34445667788889999999999987 445566778888889999999999999999999999999999988654
Q ss_pred hhhHHhhhhhhcc-----------cchhHHHHHHHHHHHHHhhcCHHH-----HHhhhhhHHHHHHHHhcCCCH-HHHHH
Q 001582 936 FRCLSVIVPLLVT-----------EDEKTLVTCINCLTKLVGRLSQEE-----LMAQLPSFLPALFEAFGNQSA-DVRKT 998 (1049)
Q Consensus 936 ~~~l~vL~p~l~s-----------~~~~t~~~al~~L~~lie~~~~~~-----l~~~L~~iip~L~~~~~D~~s-eVRKa 998 (1049)
.+.+.-+.|.++. +.++.-...+|+-.++++.++.-. ...+++.++.++.=-+.+..+ ..-..
T Consensus 884 sR~l~dvlP~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~~~v~~l~l~~~~l~~v~e~~~I~l~~~~~q~Lqe~ 963 (1014)
T KOG4524|consen 884 SRFLEDVLPWLKHLCQDSFARTILKELRIQTAEYKLQLKSISKLVKFVPYLELAGVSLHMVAEGVKIYLSLIQPQVLQEI 963 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcceeeecccccHHHHhhhhhhhHHhcChHHHHHH
Confidence 3455555555541 223333345566666666554322 134577777776655555444 45666
Q ss_pred HHHHHHHHHHHhhh-hHHHhhhcCC
Q 001582 999 VVFCLVDIYIMLGK-AFLPYLERLN 1022 (1049)
Q Consensus 999 Av~clv~l~~~lGe-~l~p~l~~L~ 1022 (1049)
|..|+..+..+=+. .+.+++..+-
T Consensus 964 ~~s~F~~~V~~ekp~~i~~~~~~lh 988 (1014)
T KOG4524|consen 964 ARSCFLDLVPVEKPQRISSMSLRLH 988 (1014)
T ss_pred HHHHHHHHhccCCCcccchhhhhcC
Confidence 66666534433332 2444544443
No 88
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=5.3 Score=49.75 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=68.8
Q ss_pred HHHHh-cCCchhhhHHHHHHHHHHHhhcCCcc---hHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCCCCChhhH
Q 001582 512 VFSRL-IDPKELVRQPCSTTLDIVSKTYSVDS---LLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGIL 587 (1049)
Q Consensus 512 ll~kl-gD~k~~vR~~a~~~L~~~~e~~~~d~---~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~ 587 (1049)
|.+.+ .|.+-..+-.+--||.++...+++++ +.+.+.+.+. +++|-+|..++-++..-+-+ .++-+
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~-~~~~~irKKA~Lca~r~irK---------~P~l~ 177 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQ-HRDPYIRKKAALCAVRFIRK---------VPDLV 177 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHh-CCCHHHHHHHHHHHHHHHHc---------CchHH
Confidence 45555 47777677777888888888888876 4556666554 46777777666666543321 23457
Q ss_pred HHHHHhHccccCCCCHHHHHHHHHHHHHHHH
Q 001582 588 KLWLAKLTPLVHDKNTKLKEAAITCIISVYT 618 (1049)
Q Consensus 588 ~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~ 618 (1049)
..++.+...++.||+.-|--++...+.+|..
T Consensus 178 e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~ 208 (866)
T KOG1062|consen 178 EHFVIAFRKLLCEKHHGVLIAGLHLITELCK 208 (866)
T ss_pred HHhhHHHHHHHhhcCCceeeeHHHHHHHHHh
Confidence 8889999999999998888887777777764
No 89
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.08 E-value=0.13 Score=47.74 Aligned_cols=71 Identities=17% Similarity=0.139 Sum_probs=59.5
Q ss_pred hhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHh
Q 001582 945 LLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPY 1017 (1049)
Q Consensus 945 ~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~ 1017 (1049)
.+.+...|+|..++.+|.++++... .....++.++..+...+.|.|+-|==+|++|++++....++++.|.
T Consensus 11 ~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 11 DLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 3444557888999999999998876 2224568888999999999999999999999999999999988776
No 90
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=0.72 Score=55.73 Aligned_cols=209 Identities=21% Similarity=0.258 Sum_probs=131.5
Q ss_pred HHHHHHhccCCCCChhHHHHHHHHHHHHHhcC-----CccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhh
Q 001582 819 PQILHLMCNGNDGSPTSKHGALQQLIKASVAN-----DHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK 893 (1049)
Q Consensus 819 ~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~-----~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~ 893 (1049)
..+.+.++|.+ ...|++|++-+.-+-+-. ....-.++.+..+..+.+.+.|-..+||..|.+.|..+-..-.
T Consensus 237 ~~A~~~lsD~~---e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe 313 (823)
T KOG2259|consen 237 SRAVKHLSDDY---EDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE 313 (823)
T ss_pred HHHHHHhcchH---HHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH
Confidence 34445556554 358999988655433211 1111234567777788888899888888888766665322111
Q ss_pred hhhHHH----------------------------------------------HHHHH-----HHHHHHhCCCcHHHHHHH
Q 001582 894 DVMEDS----------------------------------------------VEIVI-----EKLLHVTKDAVPKVSNEA 922 (1049)
Q Consensus 894 ~~~~~~----------------------------------------------~e~lL-----p~Ll~~~~Ds~~~Vr~aA 922 (1049)
+-+.+- .+.+| ..+++.+.|-.-+||++|
T Consensus 314 e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AA 393 (823)
T KOG2259|consen 314 EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAA 393 (823)
T ss_pred HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHH
Confidence 101000 01111 234455557777899999
Q ss_pred HHHHHHHHhhcCc--hhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHH
Q 001582 923 EHCLTVVLSQYDP--FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVV 1000 (1049)
Q Consensus 923 ~~~l~~i~~~~~p--~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv 1000 (1049)
.+.+-.++..-|- .+++.+|+..+.....-.++-|+..|+.+..++. .-.+.++.+.+++.|++.+||.+..
T Consensus 394 V~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~------i~eeql~~il~~L~D~s~dvRe~l~ 467 (823)
T KOG2259|consen 394 VASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA------IREEQLRQILESLEDRSVDVREALR 467 (823)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe------ecHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999888876443 4699999999988777788999999998886632 1234457789999999999999876
Q ss_pred H---------------HHHHHHHHhh------hhHHHhhhcCChhhHHHHHHHHHHh
Q 001582 1001 F---------------CLVDIYIMLG------KAFLPYLERLNSTQLRLVTIYANRI 1036 (1049)
Q Consensus 1001 ~---------------clv~l~~~lG------e~l~p~l~~L~~s~~kLL~~yi~R~ 1036 (1049)
. |+..+...++ ++++.-+..+-.....++..-..|-
T Consensus 468 elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGqnH~~lv~s~m~rf 524 (823)
T KOG2259|consen 468 ELLKNARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQNHRRLVLSNMGRF 524 (823)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhccChhhHHHHHHHH
Confidence 5 3344444444 2466656555555555555444443
No 91
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=3 Score=53.87 Aligned_cols=180 Identities=14% Similarity=0.183 Sum_probs=132.8
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 001582 432 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPH 511 (1049)
Q Consensus 432 ~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~~ 511 (1049)
.+++-+.++.+..-|.+++.. ..+...+.+++..+...|..-+.+.-+-+....|.+|..|+..|+.++.+.+..++|-
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE 742 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455788999999999999987 3333345578899999999999999999999999999999999998899999999999
Q ss_pred HHHHhcCCchhhhHHHHHHHHHHH--hh---cCCcchHHHHHHhhc----c--CCCHHHHHH-HHHHHHHHhhhhccCCC
Q 001582 512 VFSRLIDPKELVRQPCSTTLDIVS--KT---YSVDSLLPALLRSLD----E--QRSPKAKLA-VIEFAISSLNKHAMNSE 579 (1049)
Q Consensus 512 ll~klgD~k~~vR~~a~~~L~~~~--e~---~~~d~~l~~L~r~l~----~--~~~pkvk~~-~L~~l~~~l~~~~~~~~ 579 (1049)
++-.+.|-...-|+-+-+||-.++ .. ++.|.+..+|-.|+. . ...+.++.. ++.+- ..+-++ .
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~-~il~e~----~ 817 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAIT-HILQEF----K 817 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHH-HHHHHH----h
Confidence 999998888889999999999888 22 343433334433332 1 124555555 33322 233332 1
Q ss_pred CCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHH
Q 001582 580 GSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVY 617 (1049)
Q Consensus 580 ~~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly 617 (1049)
.+.+..-+.-.+..+-.|+..++++++++|+..+..+-
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv 855 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLV 855 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 23344556777777788999999999999999985543
No 92
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.00 E-value=0.33 Score=50.59 Aligned_cols=109 Identities=11% Similarity=0.127 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH---HhhhhhhHHHHHHHHHHHHHHh
Q 001582 835 SKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEML---KNQKDVMEDSVEIVIEKLLHVT 911 (1049)
Q Consensus 835 eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~---~~~~~~~~~~~e~lLp~Ll~~~ 911 (1049)
-|--|.+.+.+++..++.+..-...-+|...|...|...|..|...+|.+|+.|+ ...+..+.+|...++|.+ +.+
T Consensus 54 y~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~l-n~f 132 (183)
T PF10274_consen 54 YRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVL-NLF 132 (183)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-HHH
Confidence 5666777777777775555555678888999999999999999999999999994 445677889998877766 433
Q ss_pred CC------------CcHHHHHHHHHHHHHHHhhcCchh--hHHhhhh
Q 001582 912 KD------------AVPKVSNEAEHCLTVVLSQYDPFR--CLSVIVP 944 (1049)
Q Consensus 912 ~D------------s~~~Vr~aA~~~l~~i~~~~~p~~--~l~vL~p 944 (1049)
++ ..+.+.+..+++|..+-.+..++. .+++.+|
T Consensus 133 ~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~nIKy~IP 179 (183)
T PF10274_consen 133 KNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFINIKYMIP 179 (183)
T ss_pred HhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHHHHHHhCC
Confidence 33 336777888888888888777765 3444444
No 93
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.99 E-value=2.3 Score=53.40 Aligned_cols=146 Identities=20% Similarity=0.232 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHhhcCch-------hhHHh
Q 001582 873 ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAV----PKVSNEAEHCLTVVLSQYDPF-------RCLSV 941 (1049)
Q Consensus 873 ~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~----~~Vr~aA~~~l~~i~~~~~p~-------~~l~v 941 (1049)
.++.|...+..++.+|+. ......++.+.+||.|+..++-+. .....-|...+.++++..+|+ .+|+.
T Consensus 585 ~DP~V~~~~qd~f~el~q-~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~Fpa 663 (1005)
T KOG2274|consen 585 EDPQVASLAQDLFEELLQ-IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPA 663 (1005)
T ss_pred CCchHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHH
Confidence 346888899999999997 344567889999999999887554 566777888999999998886 34554
Q ss_pred hhhhh-cccchhHHHHHHHHHHHHHhhcCHHHH-Hh------hhhhHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHhhh
Q 001582 942 IVPLL-VTEDEKTLVTCINCLTKLVGRLSQEEL-MA------QLPSFLPALFEAFGNQSADVRK-TVVFCLVDIYIMLGK 1012 (1049)
Q Consensus 942 L~p~l-~s~~~~t~~~al~~L~~lie~~~~~~l-~~------~L~~iip~L~~~~~D~~seVRK-aAv~clv~l~~~lGe 1012 (1049)
+..+. .+.+..+...+-+||..++..- .+++ .. .+-.||..+.+.++-..++--- -+=..++++..++|.
T Consensus 664 Vak~tlHsdD~~tlQ~~~EcLra~Is~~-~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~ 742 (1005)
T KOG2274|consen 664 VAKITLHSDDHETLQNATECLRALISVT-LEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASS 742 (1005)
T ss_pred hHhheeecCChHHHHhHHHHHHHHHhcC-HHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHH
Confidence 44443 4677788888888888888653 3333 21 2447888888777644333222 222346677888887
Q ss_pred hHHHhhhc
Q 001582 1013 AFLPYLER 1020 (1049)
Q Consensus 1013 ~l~p~l~~ 1020 (1049)
++-|.+.+
T Consensus 743 el~~n~d~ 750 (1005)
T KOG2274|consen 743 ELGPNLDQ 750 (1005)
T ss_pred HhchhHHH
Confidence 77776544
No 94
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.46 Score=60.26 Aligned_cols=125 Identities=24% Similarity=0.266 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchh---hHHhhhhhhcc-cchhHHHHHHHHHHHHHhhcCHHHH
Q 001582 898 DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR---CLSVIVPLLVT-EDEKTLVTCINCLTKLVGRLSQEEL 973 (1049)
Q Consensus 898 ~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~---~l~vL~p~l~s-~~~~t~~~al~~L~~lie~~~~~~l 973 (1049)
.++|-++..|+....|..-.|+.+|...+..+....|+.- ++.-++.++.= .++....+++-.|.+|..+- =.+
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG--lLl 414 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG--LLL 414 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC--Ccc
Confidence 6688999999999999999999999999999999988764 33333332221 22344446655666655321 011
Q ss_pred HhhhhhHHHHHHHHhcCC--------CHHHHHHHHHHHHHHHHHhhh-hHHHhhhcCChh
Q 001582 974 MAQLPSFLPALFEAFGNQ--------SADVRKTVVFCLVDIYIMLGK-AFLPYLERLNST 1024 (1049)
Q Consensus 974 ~~~L~~iip~L~~~~~D~--------~seVRKaAv~clv~l~~~lGe-~l~p~l~~L~~s 1024 (1049)
-..+.+++|.+.++++-. -..||.+|++.+|+++..... ++.|++.+|...
T Consensus 415 ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~ 474 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASA 474 (1133)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHH
Confidence 123456777777776533 356999999999999999885 799998877654
No 95
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.7 Score=57.42 Aligned_cols=187 Identities=17% Similarity=0.120 Sum_probs=112.7
Q ss_pred HHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHH
Q 001582 819 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMED 898 (1049)
Q Consensus 819 ~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~ 898 (1049)
.+.+..+.+. .+.-|..||..|..+++....... ..-..+|..+++.|+|.|+-|=..|.+.+..||+-
T Consensus 730 qeai~sl~d~---qvpik~~gL~~l~~l~e~r~~~~~-~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev------- 798 (982)
T KOG4653|consen 730 QEAISSLHDD---QVPIKGYGLQMLRHLIEKRKKATL-IQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV------- 798 (982)
T ss_pred HHHHHHhcCC---cccchHHHHHHHHHHHHhcchhhh-hhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------
Confidence 4444444333 366899999999999974422211 13356888899999999988777777777777754
Q ss_pred HHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHHHhhcCch------hhHHhhhhhhcccchhHHHHHHHHHHHHHhh
Q 001582 899 SVEIVIEKLLHVTKDAV-----PKVSNEAEHCLTVVLSQYDPF------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGR 967 (1049)
Q Consensus 899 ~~e~lLp~Ll~~~~Ds~-----~~Vr~aA~~~l~~i~~~~~p~------~~l~vL~p~l~s~~~~t~~~al~~L~~lie~ 967 (1049)
|=+.++|.+++-+.+.+ +.+..-+|..++.+-.. .+- .++...+.++..-+..-|+-++..++.+...
T Consensus 799 y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~-Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 799 YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQAL-GELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQL 877 (982)
T ss_pred cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence 55568888988664322 33344444444444332 221 1222223333322333345555555555433
Q ss_pred c---CHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhhhc
Q 001582 968 L---SQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLER 1020 (1049)
Q Consensus 968 ~---~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l~~ 1020 (1049)
. ..+.+.+.+.-| +.-...|...-||.||+..++.+-.-.|+++.|.+..
T Consensus 878 ~a~~vsd~~~ev~~~I---l~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~ 930 (982)
T KOG4653|consen 878 LAFQVSDFFHEVLQLI---LSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRL 930 (982)
T ss_pred HhhhhhHHHHHHHHHH---HHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHH
Confidence 3 234443333222 1222248999999999999999999999998887643
No 96
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.85 E-value=0.58 Score=48.30 Aligned_cols=139 Identities=18% Similarity=0.293 Sum_probs=97.4
Q ss_pred HhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhhcC
Q 001582 857 KYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ-KDVMEDSVEIVIEKLLHVTKDA-VPKVSNEAEHCLTVVLSQYD 934 (1049)
Q Consensus 857 ~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~-~~~~~~~~e~lLp~Ll~~~~Ds-~~~Vr~aA~~~l~~i~~~~~ 934 (1049)
...+.+...+...|.+++...|..++.++..+++.. ...|..+....+..++..++.+ ...+.+.+..++..|....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~- 99 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI- 99 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-
Confidence 344555566777888888889999999999999886 4667677777788887777543 2445555555555544321
Q ss_pred chhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhH
Q 001582 935 PFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAF 1014 (1049)
Q Consensus 935 p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l 1014 (1049)
..+++. ..+.+.++++.+++.+.+.+++ .++...+..++-.+....+--+
T Consensus 100 --------------~~~p~l--------------~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 100 --------------RGKPTL--------------TREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTF 149 (165)
T ss_pred --------------cCCCch--------------HHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccc
Confidence 112211 1355567888999999998887 7788899999988888888788
Q ss_pred HHhhhcCChhhH
Q 001582 1015 LPYLERLNSTQL 1026 (1049)
Q Consensus 1015 ~p~l~~L~~s~~ 1026 (1049)
.||..++...-.
T Consensus 150 rp~~~ki~~~l~ 161 (165)
T PF08167_consen 150 RPFANKIESALL 161 (165)
T ss_pred cchHHHHHHHHH
Confidence 888877554433
No 97
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.82 E-value=0.78 Score=54.50 Aligned_cols=151 Identities=20% Similarity=0.258 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhh------------hh-HHH
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD------------VM-EDS 899 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~------------~~-~~~ 899 (1049)
.+.|..+++-+..+.++--... ......++..|++.|.|.+ +...+-+.+.-|+..... .+ ..+
T Consensus 244 ~~~~~~~~~~~~Wi~KaLv~R~-~~~~~~~~~~L~~lL~~~~--~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~ 320 (415)
T PF12460_consen 244 SELRPQALEILIWITKALVMRG-HPLATELLDKLLELLSSPE--LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRF 320 (415)
T ss_pred cchhHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHhCChh--hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHH
Confidence 4567777776554443210000 1234556777888888743 344444444444443110 12 366
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCch-------hhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHH
Q 001582 900 VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEE 972 (1049)
Q Consensus 900 ~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~-------~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~ 972 (1049)
+..++|+|++.+++....++..--.|+-.|++++|.. .+++.|...+...+...+..+++.|..+++.- ++.
T Consensus 321 F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~ 399 (415)
T PF12460_consen 321 FTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PEL 399 (415)
T ss_pred HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHH
Confidence 8889999999999988888888999999999998875 35666666665667778889999999999776 788
Q ss_pred HHhhhhhHHHHHHHH
Q 001582 973 LMAQLPSFLPALFEA 987 (1049)
Q Consensus 973 l~~~L~~iip~L~~~ 987 (1049)
+..|+..++|.+.+.
T Consensus 400 i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 400 ISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHhc
Confidence 889999999998763
No 98
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.82 E-value=0.28 Score=61.20 Aligned_cols=126 Identities=14% Similarity=0.172 Sum_probs=87.3
Q ss_pred hcCCCHHHHHHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhc-
Q 001582 870 LDDADSSVREVALSLI-NEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV- 947 (1049)
Q Consensus 870 L~D~n~~vr~~AL~~L-~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~- 947 (1049)
|++.+...+..|++-+ ..|.. |. .+..++|.++........++++-..-=+...+ .++|+.++-.+..+++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~--G~----dmssLf~dViK~~~trd~ElKrL~ylYl~~ya-k~~P~~~lLavNti~kD 100 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSL--GE----DMSSLFPDVIKNVATRDVELKRLLYLYLERYA-KLKPELALLAVNTIQKD 100 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhc--CC----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhh
Confidence 5666666665555433 23321 22 25567888887777666788887766666555 4577877777766665
Q ss_pred --ccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001582 948 --TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1009 (1049)
Q Consensus 948 --s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~ 1009 (1049)
+.|.-+|-.||..|+.+ +-.+ .++.+++.|.++++|+.+.|||.|..|+..+|.+
T Consensus 101 l~d~N~~iR~~AlR~ls~l----~~~e---l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLL----RVKE---LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred ccCCCHHHHHHHHHHHHhc----ChHH---HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 35667788888877653 2233 3577889999999999999999999999999943
No 99
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.80 E-value=0.094 Score=47.34 Aligned_cols=84 Identities=25% Similarity=0.345 Sum_probs=62.8
Q ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhh
Q 001582 864 TAVLEVL-DDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVI 942 (1049)
Q Consensus 864 ~~Ll~~L-~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL 942 (1049)
..|++.| .|++..+|..++.+|.++- -+.+++.|++.+.|+...|+.+|-.++..+- ....++.|
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----~~~~~~~L 67 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----DPEAIPAL 67 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----HHHTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----CHHHHHHH
Confidence 4577878 8899999999988888432 1146888888889999999999999988663 45677888
Q ss_pred hhhhcccchh-HHHHHHHHH
Q 001582 943 VPLLVTEDEK-TLVTCINCL 961 (1049)
Q Consensus 943 ~p~l~s~~~~-t~~~al~~L 961 (1049)
...+.+.+.. .+..|+..|
T Consensus 68 ~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 68 IKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHhhc
Confidence 8877665443 466676655
No 100
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=94.77 E-value=13 Score=44.82 Aligned_cols=201 Identities=15% Similarity=0.160 Sum_probs=126.8
Q ss_pred CHHHHHHHhccC----CCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 001582 817 SIPQILHLMCNG----NDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ 892 (1049)
Q Consensus 817 ~I~~lL~~l~~~----~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~ 892 (1049)
.++++|+.|.+. .+++|.--++|-..|+-+.+-.+. .-...++.-+..-+...+-.-|+.|...+..++..-
T Consensus 322 vlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd----~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp 397 (858)
T COG5215 322 VLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD----KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGP 397 (858)
T ss_pred HHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh----HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCc
Confidence 368888888652 344588777777776655532221 112223333444455566778999998999888643
Q ss_pred h-hhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhh----cCchh----hHHhhhhhhcccchhHHHHHHHHHHH
Q 001582 893 K-DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ----YDPFR----CLSVIVPLLVTEDEKTLVTCINCLTK 963 (1049)
Q Consensus 893 ~-~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~----~~p~~----~l~vL~p~l~s~~~~t~~~al~~L~~ 963 (1049)
. ....++....+|.|++...|+.-.|......|+-.|+.+ ++|.. ......-+++. ..+.-..|..-...
T Consensus 398 ~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~n 476 (858)
T COG5215 398 CEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKEN 476 (858)
T ss_pred cHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHh
Confidence 3 345677888999999999999999998888888777755 44442 11222222322 22333344433445
Q ss_pred HHhhcCHH------HHHhhhhhHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhhhhHHHhhhcCC
Q 001582 964 LVGRLSQE------ELMAQLPSFLPALFEAFG--NQSADVRKTVVFCLVDIYIMLGKAFLPYLERLN 1022 (1049)
Q Consensus 964 lie~~~~~------~l~~~L~~iip~L~~~~~--D~~seVRKaAv~clv~l~~~lGe~l~p~l~~L~ 1022 (1049)
+++++.+. .+.+..+.|+.+|+++.+ +.++..|-++..+|..+.....+.+.+.+.++.
T Consensus 477 lv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~ 543 (858)
T COG5215 477 LVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFY 543 (858)
T ss_pred HHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 56555432 234455667777777765 677889999999998888777776666555433
No 101
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=94.71 E-value=0.3 Score=47.02 Aligned_cols=97 Identities=11% Similarity=0.177 Sum_probs=72.9
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHH--HHH
Q 001582 432 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME--RIL 509 (1049)
Q Consensus 432 ~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~--~lL 509 (1049)
.+.+|..-...+..|-.++.... ...+++++.+.+++.++|.+|+..+|.+|-.++..+|+.|..++. .++
T Consensus 10 ~~~~~~p~~~~i~~i~d~~~~~~-------~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~ 82 (115)
T cd00197 10 SNENMGPDWPLIMEICDLINETN-------VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFA 82 (115)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCC-------ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHH
Confidence 34555555567777777776432 256789999999999999999999999999999999999987663 233
Q ss_pred HHHHH----Hh-c-CCchhhhHHHHHHHHHHH
Q 001582 510 PHVFS----RL-I-DPKELVRQPCSTTLDIVS 535 (1049)
Q Consensus 510 ~~ll~----kl-g-D~k~~vR~~a~~~L~~~~ 535 (1049)
-.+++ +. | |.-..||.++...+..|.
T Consensus 83 ~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 83 VELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 33332 22 3 556789999999998885
No 102
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.64 E-value=5.5 Score=46.65 Aligned_cols=189 Identities=13% Similarity=0.103 Sum_probs=114.9
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcC--CccchHHhHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhhh
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAN--DHSIWTKYFNQILTAVLEVLDD--ADSSVREVALSLINEMLKNQK 893 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~--~~~~w~~~f~~lL~~Ll~~L~D--~n~~vr~~AL~~L~~L~~~~~ 893 (1049)
+...+..+.+.+.. +........++... +..+...++-..+..++..+.+ ...++....|.++..|+...+
T Consensus 92 i~~~i~~l~~~~~~-----K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p 166 (372)
T PF12231_consen 92 IDHSIESLQNPNSP-----KSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFP 166 (372)
T ss_pred HHHHHHHHcCCCCC-----HHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHH
Confidence 45555566554321 22233333344333 3334444454445555555554 345577788999999999988
Q ss_pred hhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhh-HHhhhhhhcccc--hhHHHHHHHHHHHHHhh---
Q 001582 894 DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRC-LSVIVPLLVTED--EKTLVTCINCLTKLVGR--- 967 (1049)
Q Consensus 894 ~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~-l~vL~p~l~s~~--~~t~~~al~~L~~lie~--- 967 (1049)
..|...+..=+|.++..+-+..+.++..|..++..+...++|.+. -..+.+.++... ......-.+-|.+++..
T Consensus 167 ~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~ 246 (372)
T PF12231_consen 167 QQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDE 246 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCC
Confidence 888888888888888888888999999999999888888877642 222222332211 00000001111222211
Q ss_pred --------------cCH--HHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001582 968 --------------LSQ--EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1011 (1049)
Q Consensus 968 --------------~~~--~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lG 1011 (1049)
++. -.-..++..++...-.|+++.++.||.+|..|.-.+...+.
T Consensus 247 ~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~ 306 (372)
T PF12231_consen 247 YKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASN 306 (372)
T ss_pred cchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc
Confidence 011 11124677888888999999999999999999877665443
No 103
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=15 Score=44.93 Aligned_cols=125 Identities=13% Similarity=0.187 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhC
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK 912 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~ 912 (1049)
.|.|++|...+-.+... .+.+-... |.-|.+.+.|.-..||..|+..|..|..+.. + -+..++.+++++.
T Consensus 387 ~EVR~AAV~Sl~~La~s-sP~FA~~a----ldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~--i---~eeql~~il~~L~ 456 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATS-SPGFAVRA----LDFLVDMFNDEIEVVRLKAIFALTMISVHLA--I---REEQLRQILESLE 456 (823)
T ss_pred HHHHHHHHHHHHHHHcC-CCCcHHHH----HHHHHHHhccHHHHHHHHHHHHHHHHHHHhe--e---cHHHHHHHHHHHH
Confidence 56899999998887743 33333333 5567778899889999999999999987632 1 2345777888888
Q ss_pred CCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhh-cc-cchhH-HHHHHHHHHHHHhhcC
Q 001582 913 DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLL-VT-EDEKT-LVTCINCLTKLVGRLS 969 (1049)
Q Consensus 913 Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l-~s-~~~~t-~~~al~~L~~lie~~~ 969 (1049)
|...+||+++.+.|+. ..++-..|+...+..+ .. +.||+ +=.-+.||.++-+.++
T Consensus 457 D~s~dvRe~l~elL~~--~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 457 DRSVDVREALRELLKN--ARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQNHR 514 (823)
T ss_pred hcCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhccCh
Confidence 9999999988887763 2233334444433332 21 22322 1233445555555554
No 104
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=94.49 E-value=0.34 Score=47.32 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=58.4
Q ss_pred HhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHH---HHHHHHHHhC--------CCcHHHHHHHHHH
Q 001582 857 KYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEI---VIEKLLHVTK--------DAVPKVSNEAEHC 925 (1049)
Q Consensus 857 ~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~---lLp~Ll~~~~--------Ds~~~Vr~aA~~~ 925 (1049)
..|.+|+..|++.|.+++..|+..+|.+|..+|..-...|..++.. +|-.+.+..+ +....||.+|.++
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 3578899999999999999999999999999998877777655433 4444444433 3568899999999
Q ss_pred HHHHHh
Q 001582 926 LTVVLS 931 (1049)
Q Consensus 926 l~~i~~ 931 (1049)
+..|..
T Consensus 114 ~~~if~ 119 (122)
T cd03572 114 IKAIFS 119 (122)
T ss_pred HHHHhc
Confidence 998764
No 105
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.36 E-value=0.32 Score=55.05 Aligned_cols=128 Identities=19% Similarity=0.278 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhhhhhhHH--HHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHhhcC--chhhHHhhhhhhcccchhHH
Q 001582 880 VALSLINEMLKNQKDVMED--SVEIVIEKLL-HVTKDAVPKVSNEAEHCLTVVLSQYD--PFRCLSVIVPLLVTEDEKTL 954 (1049)
Q Consensus 880 ~AL~~L~~L~~~~~~~~~~--~~e~lLp~Ll-~~~~Ds~~~Vr~aA~~~l~~i~~~~~--p~~~l~vL~p~l~s~~~~t~ 954 (1049)
++|.++..|+++....+.+ .++.++..|| -++......||+.|..|+-..+-.-. ....+.++...+..++...+
T Consensus 2 kcL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~ 81 (298)
T PF12719_consen 2 KCLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVK 81 (298)
T ss_pred cHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHH
Confidence 4688888888877655664 3456777777 56677778999999999987664422 23456666666655677888
Q ss_pred HHHHHHHHHHHhhcCHHHHHhhh--------hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001582 955 VTCINCLTKLVGRLSQEELMAQL--------PSFLPALFEAFGNQSADVRKTVVFCLVDIY 1007 (1049)
Q Consensus 955 ~~al~~L~~lie~~~~~~l~~~L--------~~iip~L~~~~~D~~seVRKaAv~clv~l~ 1007 (1049)
..|++.+..++-.+|.+.+.... ..++..+.+.+++.+++||-.|+.++..+.
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999977764433 367888999999999999999999998865
No 106
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.34 E-value=0.38 Score=44.71 Aligned_cols=86 Identities=22% Similarity=0.166 Sum_probs=68.4
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhH
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 897 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~ 897 (1049)
..+++..+.+.. +..|..||..|.+++.... .+..+...++..++..|.|.++-|=..|.+.|..|+...+.
T Consensus 5 ~~~al~~L~dp~---~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~--- 76 (92)
T PF10363_consen 5 LQEALSDLNDPL---PPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD--- 76 (92)
T ss_pred HHHHHHHccCCC---cchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH---
Confidence 456666665543 6699999999999998887 33446778999999999999999999999999999865443
Q ss_pred HHHHHHHHHHHHHhCCCc
Q 001582 898 DSVEIVIEKLLHVTKDAV 915 (1049)
Q Consensus 898 ~~~e~lLp~Ll~~~~Ds~ 915 (1049)
.+++.|++.+.|..
T Consensus 77 ----~vl~~L~~~y~~~~ 90 (92)
T PF10363_consen 77 ----EVLPILLDEYADPS 90 (92)
T ss_pred ----HHHHHHHHHHhCcc
Confidence 37888888887764
No 107
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.17 E-value=0.65 Score=48.63 Aligned_cols=132 Identities=20% Similarity=0.363 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhc-CC---ccchHHhHHHH--------HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhh--------
Q 001582 835 SKHGALQQLIKASVA-ND---HSIWTKYFNQI--------LTAVLEVLDDADSSVREVALSLINEMLKNQKD-------- 894 (1049)
Q Consensus 835 eR~~aL~~L~~li~~-~~---~~~w~~~f~~l--------L~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~-------- 894 (1049)
-|..||.-|..+++. .. ..+|..-|-+. -..+.-++.|++..+|..|+.+|..|++..+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 478899999888877 32 23455433222 12234466899999999999999999975432
Q ss_pred -----hhHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhhcCchh--------hHHhhhhhhcccchhH
Q 001582 895 -----VMEDSVEIVIEKLLHVT--------KDAVPKVSNEAEHCLTVVLSQYDPFR--------CLSVIVPLLVTEDEKT 953 (1049)
Q Consensus 895 -----~~~~~~e~lLp~Ll~~~--------~Ds~~~Vr~aA~~~l~~i~~~~~p~~--------~l~vL~p~l~s~~~~t 953 (1049)
.|-.|...+-..|.+.+ .+....+....-.|+..++.++|..+ ++..+.+.+.++|...
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 14444333222222322 35667788899999999999988764 5566666666777777
Q ss_pred HHHHHHHHHHHHh
Q 001582 954 LVTCINCLTKLVG 966 (1049)
Q Consensus 954 ~~~al~~L~~lie 966 (1049)
+..++-+++.++.
T Consensus 162 ~v~~l~~~~~l~s 174 (182)
T PF13251_consen 162 RVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHc
Confidence 7777777776663
No 108
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.06 E-value=5.2 Score=44.56 Aligned_cols=133 Identities=20% Similarity=0.272 Sum_probs=97.9
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCCC-CchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Q 001582 431 SPSSDWCARVSAFNYLRSLLQQGPK-GIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERIL 509 (1049)
Q Consensus 431 ~~s~~WkeR~egL~~L~~ll~~~~~-~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL 509 (1049)
+.|.|+..|..|++.|..+|+.-+. .+++ ++..-|++.|..+|.|.+. +..+|..|..++ .|+..-......++
T Consensus 8 Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~--~ev~~L~~F~~~rl~D~~~--~~~~l~gl~~L~-~~~~~~~~~~~~i~ 82 (262)
T PF14500_consen 8 LTSEDPIIRAKALELLSEVLERLPPDFLSR--QEVQVLLDFFCSRLDDHAC--VQPALKGLLALV-KMKNFSPESAVKIL 82 (262)
T ss_pred hCCCCHHHHHHHHHHHHHHHHhCCHhhccH--HHHHHHHHHHHHHhccHhh--HHHHHHHHHHHH-hCcCCChhhHHHHH
Confidence 4589999999999999999998764 2332 5678889999999976544 555599998888 56544456688888
Q ss_pred HHHHHHhc--CCchhhhHHHHHHHHHHHhhcC------CcchHHHHHHhhccCCCHHHHHHHHHHHH
Q 001582 510 PHVFSRLI--DPKELVRQPCSTTLDIVSKTYS------VDSLLPALLRSLDEQRSPKAKLAVIEFAI 568 (1049)
Q Consensus 510 ~~ll~klg--D~k~~vR~~a~~~L~~~~e~~~------~d~~l~~L~r~l~~~~~pkvk~~~L~~l~ 568 (1049)
..+++..- -.....|..+-+.|+.+.+.+. .+..+..+...+++-+-|+-=.-+++.+.
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~ 149 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLK 149 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 88888763 5667788899999999987753 23455566666665577876666666554
No 109
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.05 E-value=3 Score=51.47 Aligned_cols=106 Identities=19% Similarity=0.232 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhc-----ccchhHHHHHHHHHHHHHhhcCHH
Q 001582 897 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV-----TEDEKTLVTCINCLTKLVGRLSQE 971 (1049)
Q Consensus 897 ~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~-----s~~~~t~~~al~~L~~lie~~~~~ 971 (1049)
+++.+.++|-|+.++.|..-.+.+.+...+.++++.++...+-..|+|-|. +.+-..++-|+-|+..+++++..-
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~ 463 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA 463 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999999999998777777777775 345567788899999999776544
Q ss_pred HHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001582 972 ELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1006 (1049)
Q Consensus 972 ~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l 1006 (1049)
.+ ++ .++.+.+|+.-.++++--..+..+-.+
T Consensus 464 ~v---~d-~~lpi~~~~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 464 AV---LD-ELLPILKCIKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred Hh---HH-HHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 43 33 336778999888888766555544433
No 110
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.02 E-value=1.1 Score=58.96 Aligned_cols=183 Identities=17% Similarity=0.160 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHH------------H------HHHHHHHHHHHHHhhh-h
Q 001582 834 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSS------------V------REVALSLINEMLKNQK-D 894 (1049)
Q Consensus 834 ~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~------------v------r~~AL~~L~~L~~~~~-~ 894 (1049)
.+|.-.+..+...+.+.-......+|+.+|......|..-|.. . +..++.++..++..-. .
T Consensus 1409 ~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~~~~L~k~n~s~~~~~~~~~~~~~r~~~~~~~Lvl~cl~~~~~~Dt~~ 1488 (1621)
T KOG1837|consen 1409 LERLISFYHFADYLQESLKSIVTPYFGYLLEPRVILLKKINASKHRWFWLLPVNQSRKPLLLGTLVLNCLKDLFLFDTIE 1488 (1621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhhhhcccccchhHHHHHHHHHHHHHHHhhhhhH
Confidence 3666666666666666544455568888888766666432211 1 2245566666554322 1
Q ss_pred ------hhHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhc---ccchhHHHHHHHHHHH
Q 001582 895 ------VMEDSVEIVIEKLLHVT--KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV---TEDEKTLVTCINCLTK 963 (1049)
Q Consensus 895 ------~~~~~~e~lLp~Ll~~~--~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~---s~~~~t~~~al~~L~~ 963 (1049)
+++--...++-.+++.. ....+.|...+..|+-.+... .++...+++..++. +...+.+..||..+..
T Consensus 1489 ~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v~~~li~~i~~~~~a-~~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~ 1567 (1621)
T KOG1837|consen 1489 SFVTKSRFELLSYPLVSQLVNVLLEFYASDIVSKLLIAEIASDSVA-DKDDLKPLNQKILKKTRSSSRKARYLAIIQVKL 1567 (1621)
T ss_pred HHHhhhhhhhhhhhhHHHHHHhhccchhhhHHHHHHHHHHHhhccC-ChhhhHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 11111233444555522 233455666666666665533 34336666666664 2345788899999999
Q ss_pred HHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 001582 964 LVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYL 1018 (1049)
Q Consensus 964 lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l 1018 (1049)
+++..+... ..+||+++|.|++.+.|.+-+|-..++..+-.+-.++||-++.|+
T Consensus 1568 l~~~lge~~-~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y~ 1621 (1621)
T KOG1837|consen 1568 LYTKLGENV-IVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQSYL 1621 (1621)
T ss_pred HHHHhcchh-HHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhhhcC
Confidence 999998444 478999999999999999999999999999899999999887764
No 111
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=93.99 E-value=1.7 Score=48.98 Aligned_cols=141 Identities=14% Similarity=0.225 Sum_probs=96.5
Q ss_pred CccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhh-h---hHHH--HHHHHHHHHHHhC--------CCcH
Q 001582 851 DHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD-V---MEDS--VEIVIEKLLHVTK--------DAVP 916 (1049)
Q Consensus 851 ~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~-~---~~~~--~e~lLp~Ll~~~~--------Ds~~ 916 (1049)
+...+.+++..+++.++..++|.++.++..+|.+|..++++.+. . +..+ .+.+-..|..++- +...
T Consensus 109 ~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 109 DRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred CcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 44455678999999999999999999999999999999986653 2 2222 4444444444443 4557
Q ss_pred HHHHHHHHHHHHHHhhc--Cc-----hhhHHhhhh----hhc-ccc---hhHHHHHHHHHHHHHhhcCHHHHHhhhhhHH
Q 001582 917 KVSNEAEHCLTVVLSQY--DP-----FRCLSVIVP----LLV-TED---EKTLVTCINCLTKLVGRLSQEELMAQLPSFL 981 (1049)
Q Consensus 917 ~Vr~aA~~~l~~i~~~~--~p-----~~~l~vL~p----~l~-s~~---~~t~~~al~~L~~lie~~~~~~l~~~L~~ii 981 (1049)
.+...|-.|+..++... +. ....++|.. .+. ..+ .+....-++.+..++...|...+ .||..++
T Consensus 189 ~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~-~hL~rii 267 (282)
T PF10521_consen 189 ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSV-KHLQRII 267 (282)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHH-HHHHHHH
Confidence 78888888988887652 11 113333333 221 123 34445557888888888886665 8999999
Q ss_pred HHHHHHhcCCC
Q 001582 982 PALFEAFGNQS 992 (1049)
Q Consensus 982 p~L~~~~~D~~ 992 (1049)
|.+.+-+.|..
T Consensus 268 ~~l~~~l~npf 278 (282)
T PF10521_consen 268 PVLSQILENPF 278 (282)
T ss_pred HHHHHHhcCCC
Confidence 99999887764
No 112
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=93.71 E-value=0.92 Score=57.01 Aligned_cols=148 Identities=16% Similarity=0.279 Sum_probs=107.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCc--hhhHHhh
Q 001582 865 AVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP--FRCLSVI 942 (1049)
Q Consensus 865 ~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p--~~~l~vL 942 (1049)
.|+..|+..+..+.+.+-..|.+++..-...| ++..|++++-... -..++..++.+=.| ..++..|
T Consensus 8 ~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~------l~~~l~~y~~~t~------s~~~~~il~~~~~P~~K~~~~~l 75 (668)
T PF04388_consen 8 ELLSLLESNDLSVLEEIKALLQELLNSDREPW------LVNGLVDYYLSTN------SQRALEILVGVQEPHDKHLFDKL 75 (668)
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHhhccchHH------HHHHHHHHHhhcC------cHHHHHHHHhcCCccHHHHHHHH
Confidence 46666788888888888888888886544333 5777788775442 23344555566667 6688888
Q ss_pred hhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhh-hhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhhhhHHHhhhc
Q 001582 943 VPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL-PSFLPALFEAFG-NQSADVRKTVVFCLVDIYIMLGKAFLPYLER 1020 (1049)
Q Consensus 943 ~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L-~~iip~L~~~~~-D~~seVRKaAv~clv~l~~~lGe~l~p~l~~ 1020 (1049)
...+... ..|+.+|.+|+.+|...++.. ...+ ..+++.|.+|+. |.+.-|=-+|+.||+.+.=++...+.+||..
T Consensus 76 ~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l-~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~ 152 (668)
T PF04388_consen 76 NDYFVKP--SYRLQALTLLGHFVRSQPPWL-YKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPD 152 (668)
T ss_pred HHHHcCc--hhHHHHHHHHHHHHhcCCchH-HHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHH
Confidence 8888644 567899999999997765433 2333 357788888885 9999999999999998887777777777775
Q ss_pred CChhhHHHHHHHHH
Q 001582 1021 LNSTQLRLVTIYAN 1034 (1049)
Q Consensus 1021 L~~s~~kLL~~yi~ 1034 (1049)
|+++|+.
T Consensus 153 -------Lf~If~R 159 (668)
T PF04388_consen 153 -------LFNIFGR 159 (668)
T ss_pred -------HHHHHHH
Confidence 7777764
No 113
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=93.61 E-value=0.55 Score=48.45 Aligned_cols=107 Identities=14% Similarity=0.271 Sum_probs=80.5
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCch------hhhhhH-HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHH
Q 001582 434 SDWCARVSAFNYLRSLLQQGPKGIQ------EVIQNF-EKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME 506 (1049)
Q Consensus 434 ~~WkeR~egL~~L~~ll~~~~~~~~------~v~~~l-~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~ 506 (1049)
.++..|.=||+-|..+++.+...+. .+..-+ .+||..+.+.+...++.|+..+|.++..++..++..++..+.
T Consensus 34 ~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele 113 (168)
T PF12783_consen 34 HDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE 113 (168)
T ss_pred hhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999997654332 122223 467888888777778999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCch-hhhHHHHHHHHHHHhhcCCc
Q 001582 507 RILPHVFSRLIDPKE-LVRQPCSTTLDIVSKTYSVD 541 (1049)
Q Consensus 507 ~lL~~ll~klgD~k~-~vR~~a~~~L~~~~e~~~~d 541 (1049)
.+++.++.++-+.+. +..++.. +|+++.+.+...
T Consensus 114 ~~l~~i~~~il~~~~~~~~~k~~-~Le~l~~l~~~p 148 (168)
T PF12783_consen 114 VFLSHIILRILESDNSSLWQKEL-ALEILRELCKDP 148 (168)
T ss_pred HHHHHHHHHHHccCCCcHHHHHH-HHHHHHHHHhCh
Confidence 999999998866555 3443333 566666555443
No 114
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=93.46 E-value=0.98 Score=58.15 Aligned_cols=154 Identities=21% Similarity=0.237 Sum_probs=114.0
Q ss_pred chHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhh-----HHHHHHHHHH-HHHHhCCC-----cHHHHHHH
Q 001582 854 IWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM-----EDSVEIVIEK-LLHVTKDA-----VPKVSNEA 922 (1049)
Q Consensus 854 ~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~-----~~~~e~lLp~-Ll~~~~Ds-----~~~Vr~aA 922 (1049)
.|. |..++..|+.-+.+++..+|..+-..|+++++.-+... +..+-.++.- .++.++|= ...|+++.
T Consensus 72 ~w~--f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~c 149 (1549)
T KOG0392|consen 72 QWP--FLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREAC 149 (1549)
T ss_pred ccc--HHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHH
Confidence 454 77888889998999999999999999999997655332 2222222221 22455542 34889999
Q ss_pred HHHHHHHHhhcCchh---hHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHH
Q 001582 923 EHCLTVVLSQYDPFR---CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTV 999 (1049)
Q Consensus 923 ~~~l~~i~~~~~p~~---~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaA 999 (1049)
..++..++.+..+.. .+.++..++...+|..+.+.+..+...+. .-.+.+...+.-+++.+.++++|.+-+||..|
T Consensus 150 aq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~a-ir~d~l~~~~~~vl~~~i~~L~ds~ddv~~~a 228 (1549)
T KOG0392|consen 150 AQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVA-IRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVA 228 (1549)
T ss_pred HHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcchHHHHHH
Confidence 999999999888764 56666676767789988777766666665 33566667778889999999999999999999
Q ss_pred HHHHHHHHHHh
Q 001582 1000 VFCLVDIYIML 1010 (1049)
Q Consensus 1000 v~clv~l~~~l 1010 (1049)
+..++.+-...
T Consensus 229 a~~l~~~~s~~ 239 (1549)
T KOG0392|consen 229 AQFLVPAPSIQ 239 (1549)
T ss_pred HHHhhhhhHHH
Confidence 99998776655
No 115
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.37 E-value=6.4 Score=49.59 Aligned_cols=160 Identities=14% Similarity=0.161 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhC
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK 912 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~ 912 (1049)
..+|.+|++.+...+..|.. +-.++..+++.....|..++...=-+|....+.-+ +-+-+.++.+++-++
T Consensus 33 ~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P----~~~lLavNti~kDl~ 102 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP----ELALLAVNTIQKDLQ 102 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH----HHHHHHHHHHHhhcc
Confidence 45899999998887766643 22333344444445566666654444444433222 446667888889999
Q ss_pred CCcHHHHHHHHHHHHHHHhhcCchhhHHhhh----hhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHh
Q 001582 913 DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIV----PLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAF 988 (1049)
Q Consensus 913 Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~----p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~ 988 (1049)
|+++.+|..|...+..|- -..+++.+. ..++....-+|..|+-++.++.+ ++++-+... .++..+...+
T Consensus 103 d~N~~iR~~AlR~ls~l~----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~-ld~~l~~~~--g~~~~l~~l~ 175 (757)
T COG5096 103 DPNEEIRGFALRTLSLLR----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR-LDKDLYHEL--GLIDILKELV 175 (757)
T ss_pred CCCHHHHHHHHHHHHhcC----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh-cCHhhhhcc--cHHHHHHHHh
Confidence 999999999877775443 223333333 33344556778888888888873 444444322 0223455666
Q ss_pred cCCCHHHHHHHHHHHHHHHHH
Q 001582 989 GNQSADVRKTVVFCLVDIYIM 1009 (1049)
Q Consensus 989 ~D~~seVRKaAv~clv~l~~~ 1009 (1049)
.|.++.|-.+|+.++-.+|.-
T Consensus 176 ~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 176 ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hCCCchHHHHHHHHHHHhchh
Confidence 799999999999999888865
No 116
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=93.36 E-value=0.74 Score=54.42 Aligned_cols=118 Identities=14% Similarity=-0.002 Sum_probs=83.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhh
Q 001582 863 LTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVI 942 (1049)
Q Consensus 863 L~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL 942 (1049)
+..|++.|.|.+..|+..+...|.+|= .....+.|+..+++....|+..+..++...- ....+.+
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----~~~~~~L 152 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG----------GRQAEPWLEPLLAASEPPGRAIGLAALGAHR-----HDPGPAL 152 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC----------chHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----cChHHHH
Confidence 567888889998888888777766532 1123455666668888889988776555422 1245667
Q ss_pred hhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001582 943 VPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1006 (1049)
Q Consensus 943 ~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l 1006 (1049)
.+.+...++..+..++..|+.+-. ...+|.|..++.|.+++||.+|+.++..+
T Consensus 153 ~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 153 EAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 788888888888899988876431 12335567889999999999999998433
No 117
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=93.35 E-value=2.2 Score=47.26 Aligned_cols=188 Identities=20% Similarity=0.261 Sum_probs=115.8
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcC-CccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhh
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAN-DHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 896 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~-~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~ 896 (1049)
+..++..|...++ +..+..++-.+....... +.+.+.+ ++ .+..+...|.++++.+++.||.+|..|..+....
T Consensus 14 l~~Ll~lL~~t~d--p~i~e~al~al~n~aaf~~nq~~Ir~-~G-gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~- 88 (254)
T PF04826_consen 14 LQKLLCLLESTED--PFIQEKALIALGNSAAFPFNQDIIRD-LG-GISLIGSLLNDPNPSVREKALNALNNLSVNDENQ- 88 (254)
T ss_pred HHHHHHHHhcCCC--hHHHHHHHHHHHhhccChhHHHHHHH-cC-CHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH-
Confidence 5677777765432 566777776665543111 1122221 22 3566888889999999999999999887543221
Q ss_pred HHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhhc--Cc--hhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCH
Q 001582 897 EDSVEIVIEKLLHVTK--DAVPKVSNEAEHCLTVVLSQY--DP--FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQ 970 (1049)
Q Consensus 897 ~~~~e~lLp~Ll~~~~--Ds~~~Vr~aA~~~l~~i~~~~--~p--~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~ 970 (1049)
..++..++.+++.+. .-...+..++..+|..+.-.- +. ...++.+.+++.+++.+++..++++|..|.+. +
T Consensus 89 -~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n--p 165 (254)
T PF04826_consen 89 -EQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN--P 165 (254)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC--H
Confidence 223344555555332 234678878777777663211 11 23566677888888899999999998887753 2
Q ss_pred HHHHhhh-hhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhhhh
Q 001582 971 EELMAQL-PSFLPALFEAFGN-QSADVRKTVVFCLVDIYIMLGKA 1013 (1049)
Q Consensus 971 ~~l~~~L-~~iip~L~~~~~D-~~seVRKaAv~clv~l~~~lGe~ 1013 (1049)
+.....+ ...+..+...++. ...++--.++..+..|...+..+
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 2222222 2344556666664 46777777777777777777643
No 118
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=3.3 Score=55.11 Aligned_cols=190 Identities=18% Similarity=0.214 Sum_probs=128.8
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhH
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 897 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~ 897 (1049)
+..+++.|... +...+..||++|.+++.+...+.....+...+..+.+.+-|.+..||.+...++..++...+..+.
T Consensus 43 l~~I~kkL~Kk---D~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~ls 119 (1312)
T KOG0803|consen 43 LDIIVKKLLKR---DETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLS 119 (1312)
T ss_pred HHHHHHHHhcc---ChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677777544 367999999999999977665533322333444556666889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh---------hcCchhhHHhhhhhhcc-------------------c
Q 001582 898 DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLS---------QYDPFRCLSVIVPLLVT-------------------E 949 (1049)
Q Consensus 898 ~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~---------~~~p~~~l~vL~p~l~s-------------------~ 949 (1049)
+|+..++|..+-..-|..-.|..+|-...+.... .|.|. ++.++..++.. +
T Consensus 120 p~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~-i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k 198 (1312)
T KOG0803|consen 120 PFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPE-IFYLVTEILVKETPDSLSDLRTLSSEELESK 198 (1312)
T ss_pred HHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHH-HHHHHHHHHhccCccccchhhhcchHHHHHh
Confidence 9999999999998889888888887777654332 22221 23333333210 1
Q ss_pred chhHHHHHHHHHHHHHhhcCHHH-HH---hhhhhH--HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001582 950 DEKTLVTCINCLTKLVGRLSQEE-LM---AQLPSF--LPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1011 (1049)
Q Consensus 950 ~~~t~~~al~~L~~lie~~~~~~-l~---~~L~~i--ip~L~~~~~D~~seVRKaAv~clv~l~~~lG 1011 (1049)
..+....|+.++..++...+.+. +. ..+..+ -..+-+-+.+..+.||-+...++-.+...+.
T Consensus 199 ~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~ 266 (1312)
T KOG0803|consen 199 YQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDIL 266 (1312)
T ss_pred hHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhH
Confidence 12455677888888886655433 32 212222 1334555668899999999999976665443
No 119
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.27 E-value=1.4 Score=45.43 Aligned_cols=112 Identities=21% Similarity=0.241 Sum_probs=81.3
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhhhhh-
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDAD-SSVREVALSLINEMLKNQKDV- 895 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n-~~vr~~AL~~L~~L~~~~~~~- 895 (1049)
+..++..+.+.+ ++.|-.|+.-+..++.+++.+...++....+..|+..|+..+ ..+.+.++.+|..|+......
T Consensus 27 ~~ri~~LL~s~~---~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 27 VTRINSLLQSKS---AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHhCCCC---hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 445555565443 678999999888888888788887889999999999998755 558899999999999754321
Q ss_pred ------hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcC
Q 001582 896 ------MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD 934 (1049)
Q Consensus 896 ------~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~ 934 (1049)
.-+.+..++..++....+ ..+...+..++..++..++
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 235566667777776665 4566666677777666544
No 120
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.14 E-value=0.3 Score=58.06 Aligned_cols=100 Identities=16% Similarity=0.270 Sum_probs=74.0
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHH--HH
Q 001582 430 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ER 507 (1049)
Q Consensus 430 ~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l--~~ 507 (1049)
.+...||-.=+| |-.+++.-. .+-.+++.++++++...+.+|+..||..|-.++..||..|+..+ +.
T Consensus 13 ~l~~pDWa~Nle----IcD~IN~~~-------~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~ 81 (470)
T KOG1087|consen 13 SLAEPDWALNLE----ICDLINSTE-------GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKE 81 (470)
T ss_pred cccCccHHHHHH----HHHHHhcCc-------cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 456778865433 334444322 24458999999999999999999999999999999999997433 34
Q ss_pred HHHHHHHHhc-C-CchhhhHHHHHHHHHHHhhcCC
Q 001582 508 ILPHVFSRLI-D-PKELVRQPCSTTLDIVSKTYSV 540 (1049)
Q Consensus 508 lL~~ll~klg-D-~k~~vR~~a~~~L~~~~e~~~~ 540 (1049)
+|..+++..- . .-..||.++...|+.|.++|+.
T Consensus 82 fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 82 FLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 5555555441 1 2344999999999999999988
No 121
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.00 E-value=5.6 Score=44.30 Aligned_cols=184 Identities=16% Similarity=0.201 Sum_probs=114.7
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD--ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV 910 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D--~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~ 910 (1049)
+..-..+|..|..+++-... ..+....++..+.....- --...|..++.+|..|+++....+......++..+++.
T Consensus 54 ~~~~~~~l~gl~~L~~~~~~--~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~ 131 (262)
T PF14500_consen 54 HACVQPALKGLLALVKMKNF--SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQL 131 (262)
T ss_pred HhhHHHHHHHHHHHHhCcCC--ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHH
Confidence 45556667777777744432 234456666666654432 22458999999999999887666655556677777776
Q ss_pred h-CCCcHHHHHHHHHHHHHHHhhcCchh----hHHhhhhhhc-----ccchhHHHHHHHHHHHHHhhcC-HHHHHhhhhh
Q 001582 911 T-KDAVPKVSNEAEHCLTVVLSQYDPFR----CLSVIVPLLV-----TEDEKTLVTCINCLTKLVGRLS-QEELMAQLPS 979 (1049)
Q Consensus 911 ~-~Ds~~~Vr~aA~~~l~~i~~~~~p~~----~l~vL~p~l~-----s~~~~t~~~al~~L~~lie~~~-~~~l~~~L~~ 979 (1049)
+ |++.+.-.--+-..++.++..++... ++.++.-++- ..+.+..+..-++-..|-+-+. .+.. -+.
T Consensus 132 ~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f---a~~ 208 (262)
T PF14500_consen 132 IDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF---APF 208 (262)
T ss_pred hccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh---HHH
Confidence 6 44455666667777777777776543 4444433221 1222211111111111111111 1222 255
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hHHHhhhcC
Q 001582 980 FLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERL 1021 (1049)
Q Consensus 980 iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe-~l~p~l~~L 1021 (1049)
.+|.|.+-++...+.|+.-+..+|.+....+|. .+.||+..+
T Consensus 209 ~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~i 251 (262)
T PF14500_consen 209 AFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTI 251 (262)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 679999999999999999999999999999996 588888664
No 122
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.94 E-value=1.8 Score=56.86 Aligned_cols=148 Identities=14% Similarity=0.209 Sum_probs=105.2
Q ss_pred HHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCc
Q 001582 856 TKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP 935 (1049)
Q Consensus 856 ~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p 935 (1049)
...|+..|..++..|+..-..+|..||++|..|++.-+.-+. -..+...+...+.|+..-||++|.+.+..++-. .|
T Consensus 811 ~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~-~~ 887 (1692)
T KOG1020|consen 811 SQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDSSASVREAALDLVGRFVLS-IP 887 (1692)
T ss_pred HHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc-cH
Confidence 457899999999999977788999999999999975543321 123455566677899999999999998877643 44
Q ss_pred hhhHHh---hhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001582 936 FRCLSV---IVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1009 (1049)
Q Consensus 936 ~~~l~v---L~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~ 1009 (1049)
+...++ |...|...---.|..+|+.|..+-+..+.-. -.++++--+...++|.+..|.|-+...+..+|+.
T Consensus 888 e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~---~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 888 ELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFS---KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChh---hHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 443333 3333322223456677888888877664222 2456666777888899888999999999888853
No 123
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.52 E-value=6.3 Score=48.40 Aligned_cols=88 Identities=14% Similarity=0.233 Sum_probs=62.2
Q ss_pred hhHHhhhhhhcccchhHHHHHHHHHHHHHhh-cCHHHHHhhhhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhh---
Q 001582 937 RCLSVIVPLLVTEDEKTLVTCINCLTKLVGR-LSQEELMAQLPSFLPALFEAFG-NQSADVRKTVVFCLVDIYIMLG--- 1011 (1049)
Q Consensus 937 ~~l~vL~p~l~s~~~~t~~~al~~L~~lie~-~~~~~l~~~L~~iip~L~~~~~-D~~seVRKaAv~clv~l~~~lG--- 1011 (1049)
+|...|..+|..++...|-.+++-+.+|+.. ...+.+..|.. .++..+. ++|.+||+-|++.|-++|.+-.
T Consensus 329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d----~Ii~sLkterDvSirrravDLLY~mcD~~Nak~ 404 (938)
T KOG1077|consen 329 RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQD----TIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ 404 (938)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHH----HHHHHhccccchHHHHHHHHHHHHHhchhhHHH
Confidence 4666667777666666777777777777632 23455555654 4566666 9999999999999988886654
Q ss_pred --hhHHHhhhcCChhhHHH
Q 001582 1012 --KAFLPYLERLNSTQLRL 1028 (1049)
Q Consensus 1012 --e~l~p~l~~L~~s~~kL 1028 (1049)
++++.||...+.+-+.=
T Consensus 405 IV~elLqYL~tAd~siree 423 (938)
T KOG1077|consen 405 IVAELLQYLETADYSIREE 423 (938)
T ss_pred HHHHHHHHHhhcchHHHHH
Confidence 46789998887776653
No 124
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.28 E-value=3.6 Score=50.97 Aligned_cols=181 Identities=14% Similarity=0.218 Sum_probs=112.5
Q ss_pred HHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHH
Q 001582 819 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMED 898 (1049)
Q Consensus 819 ~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~ 898 (1049)
.+|...|...+ -.++.+|++.|..++-.|.. --.++..+.+....+|..|+...--+|-.-++.++..
T Consensus 38 ~dL~~lLdSnk---d~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdL--- 105 (968)
T KOG1060|consen 38 DDLKQLLDSNK---DSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDL--- 105 (968)
T ss_pred HHHHHHHhccc---cHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCc---
Confidence 34444444333 24889999999998865532 2234556666668889989988765555555555432
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhc--------ccchhHHHHHHHHHHHHHhhcCH
Q 001582 899 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV--------TEDEKTLVTCINCLTKLVGRLSQ 970 (1049)
Q Consensus 899 ~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~--------s~~~~t~~~al~~L~~lie~~~~ 970 (1049)
+-+-|..+=..++|++..+|..|..++..|-- ++|.|++. .-..-.|.+|-..+.+|- .+++
T Consensus 106 -ALLSIntfQk~L~DpN~LiRasALRvlSsIRv--------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLY-sLd~ 175 (968)
T KOG1060|consen 106 -ALLSINTFQKALKDPNQLIRASALRVLSSIRV--------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLY-SLDP 175 (968)
T ss_pred -eeeeHHHHHhhhcCCcHHHHHHHHHHHHhcch--------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHh-cCCh
Confidence 22334555567799999999999888876542 22333332 111234555555555554 3333
Q ss_pred HHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH----hhh---hHHHhhhcCChhh
Q 001582 971 EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM----LGK---AFLPYLERLNSTQ 1025 (1049)
Q Consensus 971 ~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~----lGe---~l~p~l~~L~~s~ 1025 (1049)
+.= +.++..+-+.+.|+++-|=-+||.++-.+|-. ++. .+...|.++++=-
T Consensus 176 e~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWg 233 (968)
T KOG1060|consen 176 EQK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWG 233 (968)
T ss_pred hhH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhh
Confidence 332 25566778888999999999999999888732 221 3455566665543
No 125
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.08 E-value=6.9 Score=45.41 Aligned_cols=127 Identities=16% Similarity=0.205 Sum_probs=96.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchh---hH
Q 001582 863 LTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR---CL 939 (1049)
Q Consensus 863 L~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~---~l 939 (1049)
|..|+..++.-|..||.-||..|..++.+.+....-..-.+++++.+.+-|-...||...-..++.++-..-+.+ .+
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 445666678889999999999999999986666766667789999999999889999999999998776655554 45
Q ss_pred Hhhhhhhcc----cchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcC
Q 001582 940 SVIVPLLVT----EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 990 (1049)
Q Consensus 940 ~vL~p~l~s----~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D 990 (1049)
..+++.+.+ -....+.-++++|..+++++++..+..... +++.+...++.
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~-il~n~~d~i~~ 193 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK-ILENFKDVISK 193 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH-HHHHHHHHHHH
Confidence 555555543 335567788999999999998766654443 55665555443
No 126
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.08 E-value=4 Score=56.25 Aligned_cols=100 Identities=11% Similarity=0.176 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchh---hhhhH-HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 001582 436 WCARVSAFNYLRSLLQQGPKGIQE---VIQNF-EKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPH 511 (1049)
Q Consensus 436 WkeR~egL~~L~~ll~~~~~~~~~---v~~~l-~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~~ 511 (1049)
++-|+=+|+-|..+|+.+...+.. ....+ +.||..|.+-..-++..|+++.|+++-.++..++..|+..+.++++.
T Consensus 374 ~rsKllsL~Li~~ile~~g~~f~~~~~fi~~ik~~Lc~sL~~n~~S~~~~vf~lsl~If~~L~~~~R~~LK~eievF~~~ 453 (1780)
T PLN03076 374 MRGKILALELLKILLENAGAVFRTSDRFLGAIKQYLCLSLLKNSASSLMIIFQLSCSIFISLVSRFRAGLKAEIGVFFPM 453 (1780)
T ss_pred HHHHHHHHHHHHHHHhcccHhhhcCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999875542210 00122 46777777777788889999999999999999999999999999999
Q ss_pred HHHHhcCCch----hhhHHHHHHHHHHH
Q 001582 512 VFSRLIDPKE----LVRQPCSTTLDIVS 535 (1049)
Q Consensus 512 ll~klgD~k~----~vR~~a~~~L~~~~ 535 (1049)
++-++.+.+. .-|..+.++|..+.
T Consensus 454 I~l~ile~~~~~s~~qK~~~L~~L~~lc 481 (1780)
T PLN03076 454 IVLRVLENVAQPNFQQKMIVLRFLDKLC 481 (1780)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 9888876542 23345666666665
No 127
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=92.01 E-value=2.4 Score=50.28 Aligned_cols=119 Identities=16% Similarity=0.137 Sum_probs=81.8
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHh
Q 001582 863 LTAVLEVL-DDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSV 941 (1049)
Q Consensus 863 L~~Ll~~L-~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~v 941 (1049)
+..|+..| .|.+..++..+...|.. ++. ...+..|++++.|....|+.++-.+|. .+....+...
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~--------~~~--~~~~~~L~~~L~d~~~~vr~aaa~ALg----~i~~~~a~~~ 121 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLA--------QED--ALDLRSVLAVLQAGPEGLCAGIQAALG----WLGGRQAEPW 121 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhc--------cCC--hHHHHHHHHHhcCCCHHHHHHHHHHHh----cCCchHHHHH
Confidence 45677777 45666666544333321 111 113788888999998889888887775 3566778888
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001582 942 IVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1007 (1049)
Q Consensus 942 L~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~ 1007 (1049)
|.+++.+.+...+..++..++. .. .+-.+.+...++|.++.||.+|+.|+..+-
T Consensus 122 L~~~L~~~~p~vR~aal~al~~----r~--------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 122 LEPLLAASEPPGRAIGLAALGA----HR--------HDPGPALEAALTHEDALVRAAALRALGELP 175 (410)
T ss_pred HHHHhcCCChHHHHHHHHHHHh----hc--------cChHHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence 9999988877777666655443 11 122356778888999999999999997653
No 128
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.99 E-value=0.31 Score=35.52 Aligned_cols=31 Identities=26% Similarity=0.531 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHhhc
Q 001582 903 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY 933 (1049)
Q Consensus 903 lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~ 933 (1049)
++|.+++.+.|+..+||.+|-.|+..|++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 5899999999999999999999999998764
No 129
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.82 E-value=4.4 Score=50.61 Aligned_cols=186 Identities=13% Similarity=0.139 Sum_probs=113.4
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHH-hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhhhhh
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTK-YFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDV 895 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~-~f~~lL~~Ll~~L~D~-n~~vr~~AL~~L~~L~~~~~~~ 895 (1049)
+.+||..+.... ++-...+||.+|-+++.-++.+.... -.+.+...|...|.+. |.++...|+++|.+||+.++..
T Consensus 169 ~kkLL~gL~~~~--Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 169 AKKLLQGLQAES--DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHhccccC--ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 677777776553 25678888888888775444333221 1477888899999874 6789999999999999999865
Q ss_pred hHHHH-HHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhhcCchhhHHh-----hh---hhhcccchhHHHHHHHHHHHHH
Q 001582 896 MEDSV-EIVIEKLLHVTK-DAVPKVSNEAEHCLTVVLSQYDPFRCLSV-----IV---PLLVTEDEKTLVTCINCLTKLV 965 (1049)
Q Consensus 896 ~~~~~-e~lLp~Ll~~~~-Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~v-----L~---p~l~s~~~~t~~~al~~L~~li 965 (1049)
..-.+ +-.||.|++++. -.--.|.+.+.+++..|-.. +|-.||+. ++ .++... .-..||-.....-
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~-H~~AiL~AG~l~a~LsylDFFSi~---aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR-HPKAILQAGALSAVLSYLDFFSIH---AQRVALAIAANCC 322 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh-ccHHHHhcccHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 43211 124555555443 22234556666666555433 55554432 11 111111 1134454555555
Q ss_pred hhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 001582 966 GRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIML 1010 (1049)
Q Consensus 966 e~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~l 1010 (1049)
..+.+++.. .+.+.+|.|...+.+.|..+=..+.-|+..+...+
T Consensus 323 ksi~sd~f~-~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 323 KSIRSDEFH-FVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred hcCCCccch-HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 566666653 34566688899998888777777777776554433
No 130
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.67 E-value=1.4 Score=54.13 Aligned_cols=34 Identities=18% Similarity=0.485 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 001582 977 LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIML 1010 (1049)
Q Consensus 977 L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~l 1010 (1049)
|..++|.+.+|++|+.+-||+.|+.|+..||..+
T Consensus 132 lepl~p~IracleHrhsYVRrNAilaifsIyk~~ 165 (948)
T KOG1058|consen 132 LEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF 165 (948)
T ss_pred hhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh
Confidence 5667899999999999999999999999999883
No 131
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=91.44 E-value=2.5 Score=41.90 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhH-HHHH-HHHHHHHHHhCC---
Q 001582 839 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME-DSVE-IVIEKLLHVTKD--- 913 (1049)
Q Consensus 839 aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~-~~~e-~lLp~Ll~~~~D--- 913 (1049)
+..+|-++|.... .+=+..++.|.+.|...|+.++..||.+|..++++.+..|. .++. .++..++..+..
T Consensus 20 ~il~icd~I~~~~-----~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~ 94 (133)
T cd03561 20 LNLELCDLINLKP-----NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPK 94 (133)
T ss_pred HHHHHHHHHhCCC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCC
Confidence 4444555554442 22345688899999999999999999999999999998876 3333 566666666654
Q ss_pred CcHHHHHHHHHHHHHHHhhcCch
Q 001582 914 AVPKVSNEAEHCLTVVLSQYDPF 936 (1049)
Q Consensus 914 s~~~Vr~aA~~~l~~i~~~~~p~ 936 (1049)
....|++.+.+.+..|...++..
T Consensus 95 ~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 95 YDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCC
Confidence 46799999999999999887653
No 132
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=91.35 E-value=1.7 Score=43.83 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHhhcCc
Q 001582 860 NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVTKD-AVPKVSNEAEHCLTVVLSQYDP 935 (1049)
Q Consensus 860 ~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~--~e~lLp~Ll~~~~D-s~~~Vr~aA~~~l~~i~~~~~p 935 (1049)
+..+.+|.+.|...|+.+...||.+|..++++.|..|... -..|+..|...+.+ .+..|++.+.+.+..|...+.-
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 4567888899999999999999999999999999988744 34567777666666 6789999999999999988753
No 133
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.04 E-value=5 Score=48.25 Aligned_cols=152 Identities=18% Similarity=0.213 Sum_probs=95.3
Q ss_pred HHHHHHHHhcCCccchHHhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH-hhhhhh--HHHHHHHHHHHHHHhCCCc
Q 001582 840 LQQLIKASVANDHSIWTKYFNQILTAVLEVLD-DADSSVREVALSLINEMLK-NQKDVM--EDSVEIVIEKLLHVTKDAV 915 (1049)
Q Consensus 840 L~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~-D~n~~vr~~AL~~L~~L~~-~~~~~~--~~~~e~lLp~Ll~~~~Ds~ 915 (1049)
+.+|..+..+.++..| | ++++-.+|. .+++.+-...|.+|..++. .++..= +.++..++-++|.....+.
T Consensus 31 ~a~l~~~~t~~~f~~~---f---lr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskd 104 (885)
T COG5218 31 LAELMEMLTAHEFSEE---F---LRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKD 104 (885)
T ss_pred HHHHHHHHHHHhhHHH---H---HHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcc
Confidence 3334444444444433 2 444444443 2345555666778887776 343221 4667788888888888888
Q ss_pred HHHHHHHHHHHHHHHhhcCc--hhhHHhhhhhhcc----cchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhc
Q 001582 916 PKVSNEAEHCLTVVLSQYDP--FRCLSVIVPLLVT----EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFG 989 (1049)
Q Consensus 916 ~~Vr~aA~~~l~~i~~~~~p--~~~l~vL~p~l~s----~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~ 989 (1049)
+.||.-..+.+..+..++.+ +.++..|..-|.. .....+++|+++|+++-+--+-++-. ...++-.+++ +
T Consensus 105 k~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~--~~n~l~~~vq--n 180 (885)
T COG5218 105 KKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR--IVNLLKDIVQ--N 180 (885)
T ss_pred hhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH--HHHHHHHHHh--c
Confidence 99999999999999988888 4455555444432 34557889999999877654433321 1112222232 6
Q ss_pred CCCHHHHHHHHH
Q 001582 990 NQSADVRKTVVF 1001 (1049)
Q Consensus 990 D~~seVRKaAv~ 1001 (1049)
|+++|||.+|.-
T Consensus 181 DPS~EVRr~all 192 (885)
T COG5218 181 DPSDEVRRLALL 192 (885)
T ss_pred CcHHHHHHHHHH
Confidence 999999998864
No 134
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=90.97 E-value=3 Score=40.15 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHH--HHHHHHHH-----
Q 001582 837 HGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVE--IVIEKLLH----- 909 (1049)
Q Consensus 837 ~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e--~lLp~Ll~----- 909 (1049)
...+.+|..++... ...+..++..|.+.|.+.+..+...||.+|..++++.+.+|..++. .++..++.
T Consensus 18 ~~~i~~i~d~~~~~-----~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~ 92 (115)
T cd00197 18 WPLIMEICDLINET-----NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSK 92 (115)
T ss_pred HHHHHHHHHHHHCC-----CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccc
Confidence 34566666666543 1357788999999999999999999999999999999988876532 34444432
Q ss_pred Hh-CCCcHHHHHHHHHHHHHHH
Q 001582 910 VT-KDAVPKVSNEAEHCLTVVL 930 (1049)
Q Consensus 910 ~~-~Ds~~~Vr~aA~~~l~~i~ 930 (1049)
.. .+....|++.+.+++..|+
T Consensus 93 ~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 93 LLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred cccCCCChHHHHHHHHHHHHHh
Confidence 11 2457899999999988875
No 135
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.84 E-value=53 Score=41.16 Aligned_cols=55 Identities=15% Similarity=0.324 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHHh
Q 001582 554 QRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTH 619 (1049)
Q Consensus 554 ~~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~h 619 (1049)
+.|--+|-.+|+||. .|.+ +.-+...++.|.+|++-+++=||+.|.-++.+||..
T Consensus 110 HPNEyiRG~TLRFLc-kLkE----------~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 110 HPNEYIRGSTLRFLC-KLKE----------PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred CchHhhcchhhhhhh-hcCc----------HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 467789999999986 4533 234677788889999999999999999999999976
No 136
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=90.83 E-value=2 Score=45.30 Aligned_cols=68 Identities=16% Similarity=0.273 Sum_probs=61.3
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhh--cCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcC
Q 001582 902 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ--YDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLS 969 (1049)
Q Consensus 902 ~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~--~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~ 969 (1049)
.+++.+++.+-++...|+..|-+.+..++.. .+|..|+++|+.+..+.+..++-.|.+++..+.++++
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 4678888889999999999999999999977 7999999999998888888888899999999999984
No 137
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.63 E-value=1.3 Score=58.56 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=92.0
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhH
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 897 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~ 897 (1049)
|++|..+|...+ .+.|..|..-+..+......... +.|..+....+..+.|....||..++......+-+.+...+
T Consensus 261 ip~l~~eL~se~---~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 261 IPQLEFELLSEQ---EEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHhcch---HHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence 688888886554 57999999998888866654333 56788888999999999999999999998887766554433
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHH---HHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhh
Q 001582 898 DSVEIVIEKLLHVTKDAVPKVSNEAE---HCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGR 967 (1049)
Q Consensus 898 ~~~e~lLp~Ll~~~~Ds~~~Vr~aA~---~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~ 967 (1049)
.... +..+-+.--|...-|+..+. .....+.-.+-|. +++.+..-+..+.|.+|..|++-|+++.++
T Consensus 337 ~~~~--~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 ASTI--LLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHH--HHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3221 22222222333222222211 1111222223333 777777777777888888888888877764
No 138
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=90.41 E-value=6.4 Score=45.06 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=20.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001582 979 SFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1009 (1049)
Q Consensus 979 ~iip~L~~~~~D~~seVRKaAv~clv~l~~~ 1009 (1049)
..++.+...+.|.+..||.+|.+++..+-..
T Consensus 180 ~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 180 EAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred hhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 4456666677777777777777777555444
No 139
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.39 E-value=1.6 Score=49.46 Aligned_cols=145 Identities=17% Similarity=0.275 Sum_probs=98.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchh---
Q 001582 863 LTAVLEVLDDADSSVREVALSLINEMLKNQKD--VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR--- 937 (1049)
Q Consensus 863 L~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~--~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~--- 937 (1049)
++.|...|...|..++..++..|..|.-...+ .+.+.-..++|+|++.+.|+.++|...|.-+++.++.......
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv 289 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV 289 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH
Confidence 45678888999999999999999988754433 2434344689999999999999999999999999887654432
Q ss_pred ---hHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHH-HHHHHHHHHHHHHH
Q 001582 938 ---CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSAD-VRKTVVFCLVDIYI 1008 (1049)
Q Consensus 938 ---~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~se-VRKaAv~clv~l~~ 1008 (1049)
-++.+..+|++.-.|..++.+-|+..+.-+-.-+.+. .=..|+..|++.+.-.++| +.-+|+..++.+..
T Consensus 290 ~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI-~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 290 EAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLI-ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccce-ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 4566666676655555554444443332111112221 1123555677777766666 88889988887765
No 140
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.18 E-value=4.3 Score=49.55 Aligned_cols=148 Identities=18% Similarity=0.246 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhC
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK 912 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~ 912 (1049)
.++++=|-+-|-.+.+.. ++.=.+.+.++++.++|.+..||.+|++-|-.+|++.+..+...++ .|..++.
T Consensus 36 ~k~K~Laaq~I~kffk~F-----P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaD----vL~QlL~ 106 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHF-----PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVAD----VLVQLLQ 106 (556)
T ss_dssp HHHHHHHHHHHHHHHCC------GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHH----HHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhC-----hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHH----HHHHHHh
Confidence 445555555555554322 2233566778888889999999999999999999876554444333 3333444
Q ss_pred CCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhc---ccchhHHHHHHHHHHHHHhhcCHHHHH--hhh-hhHHHHHHH
Q 001582 913 DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV---TEDEKTLVTCINCLTKLVGRLSQEELM--AQL-PSFLPALFE 986 (1049)
Q Consensus 913 Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~---s~~~~t~~~al~~L~~lie~~~~~~l~--~~L-~~iip~L~~ 986 (1049)
.-....+..+..++..++.. +|...|..|...|. +.+..+|..||++|..-+..++.+.+. ..+ .-|+..+.+
T Consensus 107 tdd~~E~~~v~~sL~~ll~~-d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikk 185 (556)
T PF05918_consen 107 TDDPVELDAVKNSLMSLLKQ-DPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKK 185 (556)
T ss_dssp ---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHH
Confidence 44467778888888888865 66667777776665 567778888999886444444333222 111 123344556
Q ss_pred HhcC
Q 001582 987 AFGN 990 (1049)
Q Consensus 987 ~~~D 990 (1049)
.+.|
T Consensus 186 vL~D 189 (556)
T PF05918_consen 186 VLQD 189 (556)
T ss_dssp HCTT
T ss_pred HHHh
Confidence 6665
No 141
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=90.11 E-value=2 Score=43.24 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhhhhHH------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhh
Q 001582 860 NQILTAVLEVLD-DADSSVREVALSLINEMLKNQKDVMED------SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ 932 (1049)
Q Consensus 860 ~~lL~~Ll~~L~-D~n~~vr~~AL~~L~~L~~~~~~~~~~------~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~ 932 (1049)
+..++.|.+.|. .+|+.+...||.+|..++++.|..|.. |+..+|-+++....+...+|+..+.+.+..|...
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 346778888887 468889999999999999999988863 3333333444333345578999999999999988
Q ss_pred cCc
Q 001582 933 YDP 935 (1049)
Q Consensus 933 ~~p 935 (1049)
+..
T Consensus 117 f~~ 119 (141)
T cd03565 117 FRG 119 (141)
T ss_pred hCC
Confidence 754
No 142
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=89.89 E-value=7.1 Score=49.27 Aligned_cols=174 Identities=14% Similarity=0.216 Sum_probs=114.3
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHH--
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS-VEIVIEKLLH-- 909 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~-~e~lLp~Ll~-- 909 (1049)
+--|..|+..+..+. +........-.+|+.|.....+....+...-+++|..+|+--+. |... -+.+.|-++.
T Consensus 505 ~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpe-f~as~~skI~P~~i~lF 580 (1005)
T KOG2274|consen 505 PPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPE-FAASMESKICPLTINLF 580 (1005)
T ss_pred CchhHHHHHHHHhcc---CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChh-hhhhhhcchhHHHHHHH
Confidence 346777777655544 33333344556788888888877777777778888888864332 2111 1123333333
Q ss_pred --HhCCCcHHHHHHHHHHHHHHHhh---cCch--hhHHhhhhhhcccchh--H--HHHHHHHHHHHHhhcCHHHHHhhhh
Q 001582 910 --VTKDAVPKVSNEAEHCLTVVLSQ---YDPF--RCLSVIVPLLVTEDEK--T--LVTCINCLTKLVGRLSQEELMAQLP 978 (1049)
Q Consensus 910 --~~~Ds~~~Vr~aA~~~l~~i~~~---~~p~--~~l~vL~p~l~s~~~~--t--~~~al~~L~~lie~~~~~~l~~~L~ 978 (1049)
...|+ .|...+..|++.++.. +.|. +|++.++.++...+|+ + --.++++|+.++..-+++--...+.
T Consensus 581 ~k~s~DP--~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~ 658 (1005)
T KOG2274|consen 581 LKYSEDP--QVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC 658 (1005)
T ss_pred HHhcCCc--hHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH
Confidence 22454 8888888888877654 5554 5888888888764432 2 2356899999997766553333456
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhhh
Q 001582 979 SFLPALFEAFG-NQSADVRKTVVFCLVDIYIMLGK 1012 (1049)
Q Consensus 979 ~iip~L~~~~~-D~~seVRKaAv~clv~l~~~lGe 1012 (1049)
-.+|++++|.- ..|.++=..+-.||-++..+--+
T Consensus 659 ~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~e 693 (1005)
T KOG2274|consen 659 YAFPAVAKITLHSDDHETLQNATECLRALISVTLE 693 (1005)
T ss_pred HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHH
Confidence 67899999985 47889999999999988877333
No 143
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=89.88 E-value=6.2 Score=45.14 Aligned_cols=152 Identities=20% Similarity=0.324 Sum_probs=85.1
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhhhh
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLD-DADSSVREVALSLINEMLKNQKDVM 896 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~-D~n~~vr~~AL~~L~~L~~~~~~~~ 896 (1049)
++.+...+.+.+ +..|..|...|..+ + ....+..|++.|. |.+..||..+...|..+-...
T Consensus 76 v~~l~~~l~d~~---~~vr~~a~~aLg~~---~--------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~---- 137 (335)
T COG1413 76 VPLLRELLSDED---PRVRDAAADALGEL---G--------DPEAVPPLVELLENDENEGVRAAAARALGKLGDER---- 137 (335)
T ss_pred HHHHHHHhcCCC---HHHHHHHHHHHHcc---C--------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----
Confidence 455555555443 55677776643321 1 1223444556665 677778887777776653211
Q ss_pred HHHHHHHHHHHHHHhCCCcH------------HHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHH
Q 001582 897 EDSVEIVIEKLLHVTKDAVP------------KVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKL 964 (1049)
Q Consensus 897 ~~~~e~lLp~Ll~~~~Ds~~------------~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~l 964 (1049)
.+..+++...|... .++.++..++-. +.....+..+.+.+...+.-++..+...|..+
T Consensus 138 ------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~----~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~ 207 (335)
T COG1413 138 ------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE----LGDPEAIPLLIELLEDEDADVRRAAASALGQL 207 (335)
T ss_pred ------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH----cCChhhhHHHHHHHhCchHHHHHHHHHHHHHh
Confidence 15555555555431 233333333322 23334556666666655555556666555554
Q ss_pred HhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001582 965 VGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1006 (1049)
Q Consensus 965 ie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l 1006 (1049)
.... ..+.+.+.+.+.|.+..||+.++..+..+
T Consensus 208 ~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 208 GSEN---------VEAADLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred hcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 4321 34556778888899999999888887643
No 144
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.22 E-value=4 Score=53.88 Aligned_cols=113 Identities=14% Similarity=0.188 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcc----cchhHHHHHHHHHHHHHhhcCH
Q 001582 895 VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVT----EDEKTLVTCINCLTKLVGRLSQ 970 (1049)
Q Consensus 895 ~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s----~~~~t~~~al~~L~~lie~~~~ 970 (1049)
.|.+.++.+|-.||-.++.+...+|..|..|+..|+++=+--.+.+-+...+.. ..-..|-+|++++++.|-.+ +
T Consensus 809 ~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-~ 887 (1692)
T KOG1020|consen 809 SFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-P 887 (1692)
T ss_pred HHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-H
Confidence 355556667777788889999999999999999999763222222222222221 22356778899999888554 2
Q ss_pred HHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh
Q 001582 971 EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK 1012 (1049)
Q Consensus 971 ~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe 1012 (1049)
+. ...+...++..+.|+.-.|||-|+.-+-++|.-.++
T Consensus 888 e~----~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 888 EL----IFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred HH----HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 33 356677889999999999999999999999988875
No 145
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=89.21 E-value=4.9 Score=45.22 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=87.0
Q ss_pred hhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchh------------hHHhhhhhhc--------ccchhH
Q 001582 894 DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR------------CLSVIVPLLV--------TEDEKT 953 (1049)
Q Consensus 894 ~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~------------~l~vL~p~l~--------s~~~~t 953 (1049)
..++.+...++|.+|..+.|....++..+-.|+..++..+++.. +.+.+.+.+- ......
T Consensus 111 ~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 111 PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 35678888999999999999999999999999999999887665 1122222222 122334
Q ss_pred HHHHHHHHHHHHhhc---CHHHHHhhhhh-HHHHHHHHhcC-C---CHHHHHHHHHHHHHHHHHhhhhHHHhhhcC
Q 001582 954 LVTCINCLTKLVGRL---SQEELMAQLPS-FLPALFEAFGN-Q---SADVRKTVVFCLVDIYIMLGKAFLPYLERL 1021 (1049)
Q Consensus 954 ~~~al~~L~~lie~~---~~~~l~~~L~~-iip~L~~~~~D-~---~seVRKaAv~clv~l~~~lGe~l~p~l~~L 1021 (1049)
...++.+|..|+... +...-...+.+ +..++...+.+ . ...+|......+..+...+|-...+||..+
T Consensus 191 l~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~ri 266 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRI 266 (282)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 445566666665321 11111122333 33446777765 2 379999999999999999999988998774
No 146
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=89.07 E-value=7.4 Score=38.94 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHHHhCC--
Q 001582 838 GALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVTKD-- 913 (1049)
Q Consensus 838 ~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~--~e~lLp~Ll~~~~D-- 913 (1049)
++...|-+.++.+. ..-+..+..|.+.|...|+.+...||.+|..++++.+..|... -..++..|...+.+
T Consensus 24 ~~~l~icD~i~~~~-----~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~ 98 (140)
T PF00790_consen 24 SLILEICDLINSSP-----DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKK 98 (140)
T ss_dssp HHHHHHHHHHHTST-----THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCC
Confidence 34445666676652 2345678899999999999999999999999999999888644 22355555554432
Q ss_pred CcHH--HHHHHHHHHHHHHhhcCch
Q 001582 914 AVPK--VSNEAEHCLTVVLSQYDPF 936 (1049)
Q Consensus 914 s~~~--Vr~aA~~~l~~i~~~~~p~ 936 (1049)
.... |++.+.+.+..|...+...
T Consensus 99 ~~~~~~Vk~k~l~ll~~W~~~f~~~ 123 (140)
T PF00790_consen 99 TDPETPVKEKILELLQEWAEAFKSD 123 (140)
T ss_dssp THHHSHHHHHHHHHHHHHHHHTTTS
T ss_pred CCchhHHHHHHHHHHHHHHHHHCCC
Confidence 2233 9999999999999887443
No 147
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=89.07 E-value=2.4 Score=40.50 Aligned_cols=69 Identities=14% Similarity=0.281 Sum_probs=59.0
Q ss_pred chhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hHHHhhhcC
Q 001582 950 DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERL 1021 (1049)
Q Consensus 950 ~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe-~l~p~l~~L 1021 (1049)
....+..|++.++.+++ .+.+.+...+|.|+-.|-.+++.. ++|..|+.|.-.+...+++ ++.|++++.
T Consensus 28 ~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~ 97 (107)
T PF08064_consen 28 PIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQI 97 (107)
T ss_pred CHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 45567788999999998 667788888999999999988877 8999999999999999996 799998764
No 148
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=88.96 E-value=3.3 Score=41.53 Aligned_cols=75 Identities=11% Similarity=0.109 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHHHhC------CCcHHHHHHHHHHHHHHHh
Q 001582 860 NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVTK------DAVPKVSNEAEHCLTVVLS 931 (1049)
Q Consensus 860 ~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~--~e~lLp~Ll~~~~------Ds~~~Vr~aA~~~l~~i~~ 931 (1049)
+..+.+|.+.|...|+.+...||.+|..++++.|..|... -..|+..++..+. .....|+..+.+.+..|..
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3457788889999999999999999999999999988643 2346666666553 2568999999999999998
Q ss_pred hcC
Q 001582 932 QYD 934 (1049)
Q Consensus 932 ~~~ 934 (1049)
.++
T Consensus 117 ~f~ 119 (139)
T cd03567 117 ELP 119 (139)
T ss_pred Hhc
Confidence 764
No 149
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=88.91 E-value=4.1 Score=45.14 Aligned_cols=123 Identities=15% Similarity=0.235 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD------ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEK 906 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D------~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~ 906 (1049)
.+-|.+||..|+. +..+.++++-+...+.+ +|..+....+.....|+++-.--+++|+..++|.
T Consensus 212 ~~~r~aAl~sLr~----------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPS 281 (450)
T COG5095 212 EQTRDAALESLRN----------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPS 281 (450)
T ss_pred HHHHHHHHHHhcc----------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHH
Confidence 3467777777553 12344555555555443 2344444556666666666555678999999998
Q ss_pred HHHHh-----CCCcH-----HHHHHHHHHHHHHHhhcCch------hhHHhh-hhhhc-ccchhHHHHHHHHHHHHH
Q 001582 907 LLHVT-----KDAVP-----KVSNEAEHCLTVVLSQYDPF------RCLSVI-VPLLV-TEDEKTLVTCINCLTKLV 965 (1049)
Q Consensus 907 Ll~~~-----~Ds~~-----~Vr~aA~~~l~~i~~~~~p~------~~l~vL-~p~l~-s~~~~t~~~al~~L~~li 965 (1049)
+|.|+ |..-+ .+|.-|...++.++..++-. ++...+ ..++. .+-+-+--+|++++.-+-
T Consensus 282 ilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ 358 (450)
T COG5095 282 ILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS 358 (450)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence 88765 32222 37888888888888776542 222222 12221 234556678888876543
No 150
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=88.90 E-value=1.7 Score=44.85 Aligned_cols=112 Identities=18% Similarity=0.240 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhC------------------CCcHHHHHHHHHHHHHHHhhcC----chhhHHhhhhhhcccchhHHH
Q 001582 898 DSVEIVIEKLLHVTK------------------DAVPKVSNEAEHCLTVVLSQYD----PFRCLSVIVPLLVTEDEKTLV 955 (1049)
Q Consensus 898 ~~~e~lLp~Ll~~~~------------------Ds~~~Vr~aA~~~l~~i~~~~~----p~~~l~vL~p~l~s~~~~t~~ 955 (1049)
+.+..++|.|+.-.. |-.-++|.+|-+|+-+++..+. ...++..+..++.. ++-+++
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~ 83 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKM 83 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHH
Confidence 345667777775332 6678999999999999998754 34567777777765 778889
Q ss_pred HHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhc----C--------CCHHHHHHHHHHHHHHHHHhh
Q 001582 956 TCINCLTKLVGRLSQEELMAQLPSFLPALFEAFG----N--------QSADVRKTVVFCLVDIYIMLG 1011 (1049)
Q Consensus 956 ~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~----D--------~~seVRKaAv~clv~l~~~lG 1011 (1049)
.|.-+|.+++... +..+...|+.+++.+-+.+. + ...|.-++++.|+.++...+.
T Consensus 84 L~~~~l~kl~~~~-p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 84 LCHLMLSKLAQLA-PEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp HHHHHHHHHHHS--HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSST
T ss_pred HHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999998665 67777778888888777763 1 234567778888887765554
No 151
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=88.90 E-value=2.8 Score=41.00 Aligned_cols=98 Identities=10% Similarity=0.148 Sum_probs=71.3
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Q 001582 431 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILP 510 (1049)
Q Consensus 431 ~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~ 510 (1049)
..+.+|-.=..-+++|.++.-... ..+.++++.|.++|+|.+..|-..+|.+|-.++..-.+.|..|+..-+.
T Consensus 10 Tsdd~~p~pgy~~~Eia~~t~~s~-------~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~ 82 (122)
T cd03572 10 TSDDDEPTPGYLYEEIAKLTRKSV-------GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSA 82 (122)
T ss_pred hcCCCCCCchHHHHHHHHHHHcCH-------HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHH
Confidence 455666666666777777776522 3678999999999999998898999999999998888899999887665
Q ss_pred HHHHHh---c--------CCchhhhHHHHHHHHHHH
Q 001582 511 HVFSRL---I--------DPKELVRQPCSTTLDIVS 535 (1049)
Q Consensus 511 ~ll~kl---g--------D~k~~vR~~a~~~L~~~~ 535 (1049)
.+-... | |.-..||.+|.+++.++-
T Consensus 83 ~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 83 QIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 443322 2 233456777777766654
No 152
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=88.77 E-value=15 Score=40.66 Aligned_cols=170 Identities=19% Similarity=0.267 Sum_probs=102.2
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Q 001582 430 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDD-PHHKVAQAALSTLADIIPSCRKPFESYMERI 508 (1049)
Q Consensus 430 ~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~D-sn~kV~~~aL~tL~~l~~~~~~~~~~~l~~l 508 (1049)
.+.+.+=+.|..||..|.++-...... ..|+.-+.++| ...+.+ .|..|...+|..|..+.. ..+.+.-+...
T Consensus 62 lL~~p~~~vr~~AL~aL~Nls~~~en~-~~Ik~~i~~Vc---~~~~s~~lns~~Q~agLrlL~nLtv--~~~~~~~l~~~ 135 (254)
T PF04826_consen 62 LLNDPNPSVREKALNALNNLSVNDENQ-EQIKMYIPQVC---EETVSSPLNSEVQLAGLRLLTNLTV--TNDYHHMLANY 135 (254)
T ss_pred HcCCCChHHHHHHHHHHHhcCCChhhH-HHHHHHHHHHH---HHHhcCCCCCHHHHHHHHHHHccCC--CcchhhhHHhh
Confidence 677888899999999998775543321 11222223333 333444 588899999999998842 24556666677
Q ss_pred HHHHHHHhcCCchhhhHHHHHHHHHHHh-------hcCCcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCC-
Q 001582 509 LPHVFSRLIDPKELVRQPCSTTLDIVSK-------TYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEG- 580 (1049)
Q Consensus 509 L~~ll~klgD~k~~vR~~a~~~L~~~~e-------~~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~- 580 (1049)
+|.++.-|....+.+|..+.++|-.+.+ .+..+ .+..++..+....+..+-..+|.|+ +.+.++ ...+.
T Consensus 136 i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q-~~~~~~~Lf~~~~~~~~l~~~l~~~-~ni~~~-~~~~~~ 212 (254)
T PF04826_consen 136 IPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQ-VLSSFLSLFNSSESKENLLRVLTFF-ENINEN-IKKEAY 212 (254)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhcc-chhHHHHHHccCCccHHHHHHHHHH-HHHHHh-hCcccc
Confidence 8888877755555688899998877653 34443 3555554444334456677778777 456542 33221
Q ss_pred ------CCC------hhhHHHHHHhHccccCCCCHHHHHH
Q 001582 581 ------SGN------LGILKLWLAKLTPLVHDKNTKLKEA 608 (1049)
Q Consensus 581 ------~~~------~~~~~~~l~~l~~~~~Dkn~~VR~a 608 (1049)
|.. -.+.+.+..++..++..+.+|||..
T Consensus 213 ~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 213 VFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred eeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 111 0233445555555555566666653
No 153
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=88.37 E-value=2 Score=48.36 Aligned_cols=173 Identities=13% Similarity=0.198 Sum_probs=110.2
Q ss_pred HHHHhcCC-ccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHhCCCcHHHHHH
Q 001582 844 IKASVAND-HSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVE-IVIEKLLHVTKDAVPKVSNE 921 (1049)
Q Consensus 844 ~~li~~~~-~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e-~lLp~Ll~~~~Ds~~~Vr~a 921 (1049)
..+.+..+ +..|. +..+.+..|.+.+...++.|..-||=.|.+|...-.....-.+. .+.+.|++++.+....|..-
T Consensus 226 SNlcRGknP~P~w~-~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtP 304 (526)
T COG5064 226 SNLCRGKNPPPDWS-NISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTP 304 (526)
T ss_pred HHhhCCCCCCCchH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCH
Confidence 33444443 34454 56677777777777778888888888888887643334433333 25667888888877778777
Q ss_pred HHHHHHHHHhhcCch-------hhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhh-hhHHHHHHHHhcCCCH
Q 001582 922 AEHCLTVVLSQYDPF-------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL-PSFLPALFEAFGNQSA 993 (1049)
Q Consensus 922 A~~~l~~i~~~~~p~-------~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L-~~iip~L~~~~~D~~s 993 (1049)
|...+-.|++-.+.. -.++.+.++|.+.+...+.+++-.+..+. .-..+.+...+ ..++|.|++.+...+=
T Consensus 305 alR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNIT-AGnteqiqavid~nliPpLi~lls~ae~ 383 (526)
T COG5064 305 ALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT-AGNTEQIQAVIDANLIPPLIHLLSSAEY 383 (526)
T ss_pred HHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccc-cCCHHHHHHHHhcccchHHHHHHHHHHH
Confidence 776666666544332 24666677777665566666655544433 22234443333 4678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh--hHHHhh
Q 001582 994 DVRKTVVFCLVDIYIMLGK--AFLPYL 1018 (1049)
Q Consensus 994 eVRKaAv~clv~l~~~lGe--~l~p~l 1018 (1049)
-.||.|+.++..+....-. ++.+||
T Consensus 384 k~kKEACWAisNatsgg~~~PD~iryL 410 (526)
T COG5064 384 KIKKEACWAISNATSGGLNRPDIIRYL 410 (526)
T ss_pred HHHHHHHHHHHhhhccccCCchHHHHH
Confidence 9999999888766543321 455544
No 154
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=88.30 E-value=16 Score=38.51 Aligned_cols=72 Identities=24% Similarity=0.291 Sum_probs=62.0
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcch
Q 001582 422 LSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPF 501 (1049)
Q Consensus 422 l~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~ 501 (1049)
+.++|. .|-+.+=+.|..|++-|+-++++|= .+=...+..+..+..|+|..+...|...+.++...|..-+
T Consensus 10 l~~Il~--~~~~~~~~vr~~Al~~l~~il~qGL-------vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 10 LKNILE--LCLSSDDSVRLAALQVLELILRQGL-------VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHH--HHhCCCHHHHHHHHHHHHHHHhcCC-------CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 457777 7899999999999999999999863 1335678889999999999999999999999999997665
Q ss_pred H
Q 001582 502 E 502 (1049)
Q Consensus 502 ~ 502 (1049)
+
T Consensus 81 ~ 81 (187)
T PF12830_consen 81 E 81 (187)
T ss_pred H
Confidence 5
No 155
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=87.79 E-value=4.8 Score=49.71 Aligned_cols=126 Identities=19% Similarity=0.305 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHhhcCchhh
Q 001582 860 NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLH-VTKDAVPKVSNEAEHCLTVVLSQYDPFRC 938 (1049)
Q Consensus 860 ~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~-~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~ 938 (1049)
..||+.|...++|.+..+.+.+|..+..+++...-.|- -..+||.|-+ +++..+..|+..+..|+..+++.++-..|
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~v--k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v 465 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFV--KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAV 465 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHH--HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788899999999999999999999998876543221 2346777765 45677889999999999999999999999
Q ss_pred HHhhhhhhcc---cchhHHHHHHHHHHHHHhhc-C-HHHH-HhhhhhHHHHHHHH
Q 001582 939 LSVIVPLLVT---EDEKTLVTCINCLTKLVGRL-S-QEEL-MAQLPSFLPALFEA 987 (1049)
Q Consensus 939 l~vL~p~l~s---~~~~t~~~al~~L~~lie~~-~-~~~l-~~~L~~iip~L~~~ 987 (1049)
++.+.|+++. .+....++|+.+...++-.. + .+.+ +..+|-++|...+.
T Consensus 466 ~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 466 LDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 9999999863 45666778887776665333 2 2444 34567777776653
No 156
>PF05536 Neurochondrin: Neurochondrin
Probab=87.69 E-value=20 Score=44.29 Aligned_cols=190 Identities=18% Similarity=0.237 Sum_probs=121.8
Q ss_pred CCHHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchH--HhHHHHHHHHHHHh-cC-------CCHHHHHHHHHHH
Q 001582 816 PSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWT--KYFNQILTAVLEVL-DD-------ADSSVREVALSLI 885 (1049)
Q Consensus 816 ~~I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~--~~f~~lL~~Ll~~L-~D-------~n~~vr~~AL~~L 885 (1049)
+.+.+.++.|...+ -++|-.||--+.++++.+...... ..|+.|=..++.+| .. ....-+..|+.+|
T Consensus 5 ~~l~~c~~lL~~~~---D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 5 ASLEKCLSLLKSAD---DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred HHHHHHHHHhccCC---cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 34778888887665 379999999999999876543322 24555555555555 11 1245778899999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHhhcCch-------hhHHhhhhhhcccchhHHHHH
Q 001582 886 NEMLKNQKDVMEDSVEIVIEKLLHVTKDAVP-KVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLVTEDEKTLVTC 957 (1049)
Q Consensus 886 ~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~-~Vr~aA~~~l~~i~~~~~p~-------~~l~vL~p~l~s~~~~t~~~a 957 (1049)
...|..-.-.-.+-+..-||.|++.+..... .+...+-+|+..|+.. +.- ..++.|+.++.+. ....-.+
T Consensus 82 ~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~~-~~~~E~A 159 (543)
T PF05536_consen 82 AAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPNQ-SFQMEIA 159 (543)
T ss_pred HHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHhC-cchHHHH
Confidence 9999733323345566679999998876656 8999999999999933 221 2456666666553 2233456
Q ss_pred HHHHHHHHhhcCHHHHH---hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 001582 958 INCLTKLVGRLSQEELM---AQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIML 1010 (1049)
Q Consensus 958 l~~L~~lie~~~~~~l~---~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~l 1010 (1049)
++++..++...+.+... ..+..+++.+.+.+......-+=.....|..+....
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 67777776655543332 334566777777776665555555555555554443
No 157
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=87.67 E-value=21 Score=49.72 Aligned_cols=154 Identities=12% Similarity=0.124 Sum_probs=101.5
Q ss_pred HhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhhhh------------------------------------hhHHH
Q 001582 857 KYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKD------------------------------------VMEDS 899 (1049)
Q Consensus 857 ~~f~~lL~~Ll~~L~D~-n~~vr~~AL~~L~~L~~~~~~------------------------------------~~~~~ 899 (1049)
.+|..++..|.+..... +.++-..|+.+|..+...+.. ....+
T Consensus 1265 ~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l 1344 (1780)
T PLN03076 1265 TTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYF 1344 (1780)
T ss_pred hHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHH
Confidence 57888888877776533 344555666666644222200 00122
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcC----ch---hhHH-hhhhhhcc-----------------------
Q 001582 900 VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD----PF---RCLS-VIVPLLVT----------------------- 948 (1049)
Q Consensus 900 ~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~----p~---~~l~-vL~p~l~s----------------------- 948 (1049)
--.+|-.|-+.+.|...+||..|.+.+-.++..+. +. .|+. +|.|++..
T Consensus 1345 W~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~ 1424 (1780)
T PLN03076 1345 WFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQG 1424 (1780)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 23355555566779999999999998876665543 32 2444 66666521
Q ss_pred ----cch--hHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001582 949 ----EDE--KTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1011 (1049)
Q Consensus 949 ----~~~--~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lG 1011 (1049)
+.| .|-..|++.+..|+.++ -+.|...|+.++.-|..|+...+--+-+..+.||..+....|
T Consensus 1425 ~~e~~~Wl~eT~~~AL~~lvdLft~f-Fd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076 1425 ELDQDAWLYETCTLALQLVVDLFVKF-YPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence 113 23345566666666555 377778899999999999999999999999999999988877
No 158
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.51 E-value=2.6 Score=41.03 Aligned_cols=70 Identities=16% Similarity=0.318 Sum_probs=44.1
Q ss_pred hhHHhhhhhhc-ccchhHHHHHHHHHHHHHhhcC--HHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001582 937 RCLSVIVPLLV-TEDEKTLVTCINCLTKLVGRLS--QEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1008 (1049)
Q Consensus 937 ~~l~vL~p~l~-s~~~~t~~~al~~L~~lie~~~--~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~ 1008 (1049)
.+++.|..+|. +.+..+...|+.=|+.++..++ ...+ ..+ ..-..+.+.++|.+++||+.|..|+-.+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii-~~l-g~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNII-EKL-GAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHH-HHH-SHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHH-Hhc-ChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45666666663 3344555556666777777764 2233 222 133567899999999999999999976653
No 159
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=87.47 E-value=17 Score=43.88 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD--------ADSSVREVALSLINEMLKNQKDVMEDSVEIVI 904 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D--------~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lL 904 (1049)
...|.+||+.|.. +..+.+++.-+...+.+ .|-......++++..|++|-.-.+++|+-.++
T Consensus 221 ~~~r~eAL~sL~T----------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~ 290 (576)
T KOG2549|consen 221 EPLRQEALQSLET----------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLV 290 (576)
T ss_pred HHHHHHHHHhhcc----------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 5689999998653 22456667777766654 23334445566666676665566899999999
Q ss_pred HHHHHHhC----------CCcHHHHHHHHHHHHHHHhhcCch------hhHHhhhhhhcc--cchhHHHHHHHHHHHHH
Q 001582 905 EKLLHVTK----------DAVPKVSNEAEHCLTVVLSQYDPF------RCLSVIVPLLVT--EDEKTLVTCINCLTKLV 965 (1049)
Q Consensus 905 p~Ll~~~~----------Ds~~~Vr~aA~~~l~~i~~~~~p~------~~l~vL~p~l~s--~~~~t~~~al~~L~~li 965 (1049)
|.||.|+- |.+-.+|.-|-..+..|+..++-. +++..+.-.+.. +.+-+.-+||..|..+-
T Consensus 291 PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 291 PSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred hHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 99998873 555667888888888888765432 344444444432 34566777777765543
No 160
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=87.28 E-value=5 Score=47.97 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=43.3
Q ss_pred hHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcC--CCHHHHHHHHH
Q 001582 938 CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN--QSADVRKTVVF 1001 (1049)
Q Consensus 938 ~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D--~~seVRKaAv~ 1001 (1049)
++.+.--+|.++. .-..++++|..+++.++.+.+.+.++.|+-.+++.+.. +..-||.-++|
T Consensus 203 iLgvFQkLi~sk~--~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F 266 (435)
T PF03378_consen 203 ILGVFQKLIASKA--NDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVF 266 (435)
T ss_dssp HHHHHHHHHT-TT--CHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHH
T ss_pred HHHHHHHHHCCCC--cchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHH
Confidence 4444444444543 22578999999999999999999999999999998874 34445555555
No 161
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.22 E-value=21 Score=45.77 Aligned_cols=156 Identities=12% Similarity=0.184 Sum_probs=106.8
Q ss_pred CCHHHHHHHHHHHHHHHHhhh--hhhHHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHHHhh-cCch----hhHHhhhh
Q 001582 873 ADSSVREVALSLINEMLKNQK--DVMEDSVEI-VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ-YDPF----RCLSVIVP 944 (1049)
Q Consensus 873 ~n~~vr~~AL~~L~~L~~~~~--~~~~~~~e~-lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~-~~p~----~~l~vL~p 944 (1049)
.|..-.+.||.++..|+.-+. ..++..+|. ++++++=.+.++.-..|..|-..+..+... ++-. ..+.....
T Consensus 430 ~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~ 509 (1010)
T KOG1991|consen 430 KNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHN 509 (1010)
T ss_pred cChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Confidence 445577899999999986442 334444442 566677677888888888888888888832 3322 23444445
Q ss_pred hhc-ccchhHHHHHHHHHHHHHhhcC--HHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhhhcC
Q 001582 945 LLV-TEDEKTLVTCINCLTKLVGRLS--QEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERL 1021 (1049)
Q Consensus 945 ~l~-s~~~~t~~~al~~L~~lie~~~--~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l~~L 1021 (1049)
.+. +.+-|.++.|.-.|..++.... .+-+.+|+|.+|..+.+.+++.+.|+=. +||-++...++|++-||-..|
T Consensus 510 ~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt---~vme~iV~~fseElsPfA~eL 586 (1010)
T KOG1991|consen 510 CLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT---NVMEKIVCKFSEELSPFAVEL 586 (1010)
T ss_pred HhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH---HHHHHHHHHHHHhhchhHHHH
Confidence 554 5667888888777777775543 2447899999999999999999988755 555566677889988887655
Q ss_pred ChhhHHHHHHHHH
Q 001582 1022 NSTQLRLVTIYAN 1034 (1049)
Q Consensus 1022 ~~s~~kLL~~yi~ 1034 (1049)
.. .|.+.+.+
T Consensus 587 ~q---~La~~F~k 596 (1010)
T KOG1991|consen 587 CQ---NLAETFLK 596 (1010)
T ss_pred HH---HHHHHHHH
Confidence 32 24444443
No 162
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=87.01 E-value=22 Score=41.69 Aligned_cols=133 Identities=17% Similarity=0.246 Sum_probs=78.8
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhhhHHH----HHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHhhc--C---chhh
Q 001582 869 VLDDADSSVREVALSLINEMLKNQKDVMEDS----VEIVIEKLLHVTKDAV-PKVSNEAEHCLTVVLSQY--D---PFRC 938 (1049)
Q Consensus 869 ~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~----~e~lLp~Ll~~~~Ds~-~~Vr~aA~~~l~~i~~~~--~---p~~~ 938 (1049)
.|.|. ..||..|++++++++.+... +..+ ++.++-.-++ .|.+ ..=|+.|-..++.++..- . |..+
T Consensus 34 lL~~~-~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~--~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~v 109 (371)
T PF14664_consen 34 LLSDS-KEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLD--RDNKNDVEREQALKLIRAFLEIKKGPKEIPRGV 109 (371)
T ss_pred HCCCc-HHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhc--ccCCChHHHHHHHHHHHHHHHhcCCcccCCHHH
Confidence 33444 88999999999999976532 2222 3333333333 3433 334778888888888772 2 4457
Q ss_pred HHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001582 939 LSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1011 (1049)
Q Consensus 939 l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lG 1011 (1049)
+..|+.+....+.+-+..|++.|.++.=.- ++.+..+ .. +..|.+.+-|...+ .+-.++..+...+.
T Consensus 110 vralvaiae~~~D~lr~~cletL~El~l~~-P~lv~~~-gG-~~~L~~~l~d~~~~---~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 110 VRALVAIAEHEDDRLRRICLETLCELALLN-PELVAEC-GG-IRVLLRALIDGSFS---ISESLLDTLLYLLD 176 (371)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHhhC-HHHHHHc-CC-HHHHHHHHHhccHh---HHHHHHHHHHHHhC
Confidence 777777777777788889999998876443 4443221 11 24455555554444 33334444444444
No 163
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=86.79 E-value=53 Score=39.43 Aligned_cols=198 Identities=13% Similarity=0.160 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH----hhhhhhHHHHHHHHHHHH
Q 001582 834 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLK----NQKDVMEDSVEIVIEKLL 908 (1049)
Q Consensus 834 ~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D-~n~~vr~~AL~~L~~L~~----~~~~~~~~~~e~lLp~Ll 908 (1049)
|--..++-.+..++++.-..........+...+....++ +|+.----.++.|..+++ ..+..+..+-+.++|.+.
T Consensus 44 eylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~ 123 (435)
T PF03378_consen 44 EYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQ 123 (435)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Confidence 334444444444444544443333333333333333343 455444444555555554 333434456667777777
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHhhcC----chhhHHhhhhhhcccchh--HHH-HHHHHHHHHHhhcCHHHH-HhhhhhH
Q 001582 909 HVTKDAVPKVSNEAEHCLTVVLSQYD----PFRCLSVIVPLLVTEDEK--TLV-TCINCLTKLVGRLSQEEL-MAQLPSF 980 (1049)
Q Consensus 909 ~~~~Ds~~~Vr~aA~~~l~~i~~~~~----p~~~l~vL~p~l~s~~~~--t~~-~al~~L~~lie~~~~~~l-~~~L~~i 980 (1049)
..+.....+..--+-+.+..+++..+ |+.....+.+++.-.-|. .++ +...+|...+++.+.... ..++..+
T Consensus 124 ~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~i 203 (435)
T PF03378_consen 124 EILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPI 203 (435)
T ss_dssp HHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHH
Confidence 77776667788888888888887765 122222333333323332 122 334677777777765554 2467777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hHHHhhhcCChhhHHHHHHHHHHhhhcc
Q 001582 981 LPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLRLVTIYANRISQAR 1040 (1049)
Q Consensus 981 ip~L~~~~~D~~seVRKaAv~clv~l~~~lGe-~l~p~l~~L~~s~~kLL~~yi~R~~~~r 1040 (1049)
+-..-+++.....| ..+.+.+..+...++- .+.||++. .+..-+.|..+++
T Consensus 204 LgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~-------I~~lll~RLq~sk 255 (435)
T PF03378_consen 204 LGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQ-------IFTLLLTRLQSSK 255 (435)
T ss_dssp HHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHH-------HHHHHHHHHHHC-
T ss_pred HHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHH-------HHHHHHHHHhhCC
Confidence 77777888777666 4588899999999985 57899876 5555555555444
No 164
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=86.77 E-value=12 Score=37.01 Aligned_cols=136 Identities=15% Similarity=0.328 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHH
Q 001582 840 LQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVS 919 (1049)
Q Consensus 840 L~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr 919 (1049)
...+..++...-+..|++-|..++ ..+.. +.......|.+|..+.+.... + . ..+-...-+
T Consensus 9 ~~~l~~i~~~~~P~~Wp~~l~~l~----~~~~~-~~~~~~~~L~iL~~l~eEi~~-~---~----------~~~~~~~r~ 69 (148)
T PF08389_consen 9 AQVLAEIAKRDWPQQWPDFLEDLL----QLLQS-SPQHLELVLRILRILPEEITD-F---R----------RSSLSQERR 69 (148)
T ss_dssp HHHHHHHHHHHTTTTSTTHHHHHH----HHHHT-THHHHHHHHHHHHHHHHHHHT-S---H----------CCHSHHHHH
T ss_pred HHHHHHHHHHHChhhCchHHHHHH----HHhcc-chhHHHHHHHHHHHHHHHHHh-h---h----------chhhhHHHH
Confidence 334555555555667776545444 44444 455666677777777654432 0 0 000001112
Q ss_pred HHHHHHHHHHHhhcCchhhHHhhhhhhcccc----hhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHH
Q 001582 920 NEAEHCLTVVLSQYDPFRCLSVIVPLLVTED----EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADV 995 (1049)
Q Consensus 920 ~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~----~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seV 995 (1049)
.....++... ...++.++..++.... ......+++++..++...+.+.+.. ..+++.+++.+.+.+ .
T Consensus 70 ~~l~~~l~~~-----~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l~~~~--~ 140 (148)
T PF08389_consen 70 RELKDALRSN-----SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLLQSPE--L 140 (148)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHTTSCC--C
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHcCCHH--H
Confidence 2222222211 1123334444443211 3445678899999998666666543 448889999995554 5
Q ss_pred HHHHHHHH
Q 001582 996 RKTVVFCL 1003 (1049)
Q Consensus 996 RKaAv~cl 1003 (1049)
|.+|+.||
T Consensus 141 ~~~A~~cl 148 (148)
T PF08389_consen 141 REAAAECL 148 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999996
No 165
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.74 E-value=10 Score=46.89 Aligned_cols=178 Identities=19% Similarity=0.279 Sum_probs=111.8
Q ss_pred CH-HHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCc
Q 001582 421 SL-SDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRK 499 (1049)
Q Consensus 421 ~l-~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~ 499 (1049)
|| .|+++ +++++--=.||.|+.-|=.++-+-+. .|...+.-|+..|.||...|+++|..++.+|+..-++
T Consensus 144 DLa~Dv~t--LL~sskpYvRKkAIl~lykvFLkYPe-------Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 144 DLADDVFT--LLNSSKPYVRKKAILLLYKVFLKYPE-------ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred HHHHHHHH--HHhcCchHHHHHHHHHHHHHHHhhhH-------hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 44 57777 78888888899999999888876443 4556667778899999999999999999999998876
Q ss_pred chHHHHHHHHHHHHHHhcC-CchhhhHHHHHHHHHHHhhcCCc-----chHHHHHHhhccCCCHHHHHHHHHHHHHHhhh
Q 001582 500 PFESYMERILPHVFSRLID-PKELVRQPCSTTLDIVSKTYSVD-----SLLPALLRSLDEQRSPKAKLAVIEFAISSLNK 573 (1049)
Q Consensus 500 ~~~~~l~~lL~~ll~klgD-~k~~vR~~a~~~L~~~~e~~~~d-----~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~ 573 (1049)
.+-+ |.|-+|+-|.+ ..+.|= .+.|..+..-.|.+ .+++.|...+ .+.-...=+.+++...++.
T Consensus 215 nyL~----LAP~ffkllttSsNNWmL---IKiiKLF~aLtplEPRLgKKLieplt~li---~sT~AmSLlYECvNTVVa~ 284 (877)
T KOG1059|consen 215 NYLQ----LAPLFYKLLVTSSNNWVL---IKLLKLFAALTPLEPRLGKKLIEPITELM---ESTVAMSLLYECVNTVVAV 284 (877)
T ss_pred cccc----ccHHHHHHHhccCCCeeh---HHHHHHHhhccccCchhhhhhhhHHHHHH---HhhHHHHHHHHHHHHheee
Confidence 5432 45666777743 344443 33333344333333 1122222111 1223333344554332221
Q ss_pred hccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHH
Q 001582 574 HAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYT 618 (1049)
Q Consensus 574 ~~~~~~~~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~ 618 (1049)
.+.++..-......+|+.++-.+++|..+.++.-+..++.-|-.
T Consensus 285 -s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k 328 (877)
T KOG1059|consen 285 -SMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK 328 (877)
T ss_pred -hhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh
Confidence 12222112235578889999999999999999888777755543
No 166
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.70 E-value=9.8 Score=46.91 Aligned_cols=127 Identities=18% Similarity=0.209 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhh--cCchhhHHhhhhhh--
Q 001582 873 ADSSVREVALSLINEMLKNQKD--VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ--YDPFRCLSVIVPLL-- 946 (1049)
Q Consensus 873 ~n~~vr~~AL~~L~~L~~~~~~--~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~--~~p~~~l~vL~p~l-- 946 (1049)
++..+....+.++..++..++. .-+.++..++-.||..+..+.+.||--.-..+..+... -=++.++.-|..-|
T Consensus 54 Kresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~ 133 (892)
T KOG2025|consen 54 KRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLI 133 (892)
T ss_pred cCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHH
Confidence 4555667778888888876652 23357788889999888888899999988888888862 22344555444333
Q ss_pred --cccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHh-cCCCHHHHHHHHHHHH
Q 001582 947 --VTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAF-GNQSADVRKTVVFCLV 1004 (1049)
Q Consensus 947 --~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~-~D~~seVRKaAv~clv 1004 (1049)
.......|+.|+.+|.++-+.-.-+++ + +...+...+ +|+++|||.+|.-|+.
T Consensus 134 Rl~Drep~VRiqAv~aLsrlQ~d~~dee~----~-v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 134 RLKDREPNVRIQAVLALSRLQGDPKDEEC----P-VVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HHhccCchHHHHHHHHHHHHhcCCCCCcc----c-HHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 234556788999998887643222222 1 112233333 5999999999988763
No 167
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=86.49 E-value=6.2 Score=39.74 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhhcCc
Q 001582 860 NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVTK-DAVPKVSNEAEHCLTVVLSQYDP 935 (1049)
Q Consensus 860 ~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~--~e~lLp~Ll~~~~-Ds~~~Vr~aA~~~l~~i~~~~~p 935 (1049)
+..+++|.+.|...|+.+...||.+|..++++.|..|... -..++..|...+. .....|++.+.+.+..|...+..
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 4567888999999999999999999999999999877633 2345555555553 56689999999999999988754
No 168
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.32 E-value=99 Score=38.63 Aligned_cols=118 Identities=16% Similarity=0.202 Sum_probs=79.8
Q ss_pred HHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcch
Q 001582 422 LSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPF 501 (1049)
Q Consensus 422 l~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~ 501 (1049)
..|+.+ ++.+.-++|+.=|-..+.-++++... -++.+...+++=|...|..-+.+||.+++.+-.. ++
T Consensus 76 hmEaV~--LLss~kysEKqIGYl~is~L~n~n~d-------l~klvin~iknDL~srn~~fv~LAL~~I~niG~r---e~ 143 (938)
T KOG1077|consen 76 HMEAVN--LLSSNKYSEKQIGYLFISLLLNENSD-------LMKLVINSIKNDLSSRNPTFVCLALHCIANIGSR---EM 143 (938)
T ss_pred hHHHHH--HhhcCCccHHHHhHHHHHHHHhcchH-------HHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH---hH
Confidence 468888 89999999999999999999987542 2344556677777777777788899988865422 11
Q ss_pred HHHHHHHHHHHHHHh--cCCchhhhHHHHHHHHHHHhh----cCCcchHHHHHHhhccC
Q 001582 502 ESYMERILPHVFSRL--IDPKELVRQPCSTTLDIVSKT----YSVDSLLPALLRSLDEQ 554 (1049)
Q Consensus 502 ~~~l~~lL~~ll~kl--gD~k~~vR~~a~~~L~~~~e~----~~~d~~l~~L~r~l~~~ 554 (1049)
...+-+.+-+-| |+..+.||+++.-||-.+-.. ++++.-...+.-.|+|+
T Consensus 144 ---~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~ 199 (938)
T KOG1077|consen 144 ---AEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQ 199 (938)
T ss_pred ---HHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCcc
Confidence 122222222333 799999999887777766543 44544455555566654
No 169
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.10 E-value=2.3 Score=48.23 Aligned_cols=170 Identities=19% Similarity=0.232 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHHHhcC-CccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHH
Q 001582 834 TSKHGALQQLIKASVAN-DHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK--DVMEDSVEIVIEKLLHV 910 (1049)
Q Consensus 834 ~eR~~aL~~L~~li~~~-~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~--~~~~~~~e~lLp~Ll~~ 910 (1049)
.-..+|-.++..+.... ++..+.+ +.-+-..+++.+.|. ..++-.+..+|..|++--. ..+... .-|..+...
T Consensus 100 ~Iq~aa~~alGnlAVn~enk~liv~-l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~kiA~s--GaL~pltrL 175 (550)
T KOG4224|consen 100 CIQCAAGEALGNLAVNMENKGLIVS-LLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKVKIARS--GALEPLTRL 175 (550)
T ss_pred hhhhhhhhhhccceeccCCceEEEe-ccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchhhhhhc--cchhhhHhh
Confidence 34455556666554322 2222111 122223345555553 3355566777777775322 223222 123334444
Q ss_pred hCCCcHHHHHHHHHHHHHHHhhcCch------hhHHhhhhhhcccchhHHHHHHHHHHHH-HhhcCHHHHHhhhhhHHHH
Q 001582 911 TKDAVPKVSNEAEHCLTVVLSQYDPF------RCLSVIVPLLVTEDEKTLVTCINCLTKL-VGRLSQEELMAQLPSFLPA 983 (1049)
Q Consensus 911 ~~Ds~~~Vr~aA~~~l~~i~~~~~p~------~~l~vL~p~l~s~~~~t~~~al~~L~~l-ie~~~~~~l~~~L~~iip~ 983 (1049)
.+....-|++-+..++-.|-.....- -.+++|...+.+.+....-.|...+..+ +.+.....|.+.=|.++|.
T Consensus 176 akskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~ 255 (550)
T KOG4224|consen 176 AKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPA 255 (550)
T ss_pred cccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHH
Confidence 44445678888888887776543322 3578888888888887777887777654 3444567777777899999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHH
Q 001582 984 LFEAFGNQSADVRKTVVFCLVDIY 1007 (1049)
Q Consensus 984 L~~~~~D~~seVRKaAv~clv~l~ 1007 (1049)
|++.|+|.++.|.-.|-.++-.+-
T Consensus 256 Lv~Lmd~~s~kvkcqA~lALrnla 279 (550)
T KOG4224|consen 256 LVDLMDDGSDKVKCQAGLALRNLA 279 (550)
T ss_pred HHHHHhCCChHHHHHHHHHHhhhc
Confidence 999999999999988888876553
No 170
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=85.97 E-value=2.6 Score=52.97 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDAD---SSVREVALSLINEMLKNQKD-VMEDSVEIVIEKLL 908 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n---~~vr~~AL~~L~~L~~~~~~-~~~~~~e~lLp~Ll 908 (1049)
.+.|..++.-|.-++.+... ...+|.+.+.+.++..=.|.+ ..||+.||.+|..|.+.++. .+.+|-..+|-.|+
T Consensus 923 ~~v~vstl~~i~~~l~~~~t-L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~ 1001 (1030)
T KOG1967|consen 923 VIVRVSTLRTIPMLLTESET-LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALI 1001 (1030)
T ss_pred cchhhhHhhhhhHHHHhccc-cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhh
Confidence 67889999988887766544 446788999999888777655 56999999999999998874 57788889999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHhhc
Q 001582 909 HVTKDAVPKVSNEAEHCLTVVLSQY 933 (1049)
Q Consensus 909 ~~~~Ds~~~Vr~aA~~~l~~i~~~~ 933 (1049)
..++|++..||+.|-.|=..|....
T Consensus 1002 k~LdDkKRlVR~eAv~tR~~W~~l~ 1026 (1030)
T KOG1967|consen 1002 KILDDKKRLVRKEAVDTRQNWYMLG 1026 (1030)
T ss_pred hccCcHHHHHHHHHHHHhhhhhhcc
Confidence 9999999999999999988776543
No 171
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=85.89 E-value=21 Score=38.10 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=65.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhh
Q 001582 869 VLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLL 946 (1049)
Q Consensus 869 ~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l 946 (1049)
.|.-.-..+-...|.++..|++..+.+..+++..+|..|-+...+..-..+++++.|+...+..+.|+.++.++.=.+
T Consensus 8 ~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl 85 (198)
T PF08161_consen 8 LLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNL 85 (198)
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCc
Confidence 333334556778899999999999998889888889889888888878999999999999999999999998764333
No 172
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=85.71 E-value=16 Score=37.20 Aligned_cols=95 Identities=16% Similarity=0.281 Sum_probs=56.2
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCC--ccchHHhHHHHHHHHHHHh--------cCCC---HHH------H
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAND--HSIWTKYFNQILTAVLEVL--------DDAD---SSV------R 878 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~--~~~w~~~f~~lL~~Ll~~L--------~D~n---~~v------r 878 (1049)
|.+++..|.... ..+|.+||+.|..++.... ...-.+.|..|+..|++.+ ..++ ... .
T Consensus 6 i~~~~~~L~S~k---~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL 82 (155)
T PF11640_consen 6 INSILRLLSSDK---IKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRL 82 (155)
T ss_pred HHHHHHHHhccc---cchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHH
Confidence 566777776553 5799999999999996552 2222334444444544433 1221 112 2
Q ss_pred HHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHhCCCc
Q 001582 879 EVALSLINEMLKNQKDVME-DSVEIVIEKLLHVTKDAV 915 (1049)
Q Consensus 879 ~~AL~~L~~L~~~~~~~~~-~~~e~lLp~Ll~~~~Ds~ 915 (1049)
..+..+|+.+++.-..+|. ..+..++..+++.+.++.
T Consensus 83 ~~~a~~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~ 120 (155)
T PF11640_consen 83 SSCASALRLFVEKSNSRLKRKTVKALLDHITDLLPDPD 120 (155)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhCCc
Confidence 3445566666654444554 335667888888887775
No 173
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.67 E-value=34 Score=42.04 Aligned_cols=121 Identities=20% Similarity=0.234 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhc--CchhhHHhhhhhhcccch
Q 001582 874 DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY--DPFRCLSVIVPLLVTEDE 951 (1049)
Q Consensus 874 n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~--~p~~~l~vL~p~l~s~~~ 951 (1049)
+..+...|-..|...++ .|-...+..|..+++++.|....||..|...|..++... ...++..+|..+|++++.
T Consensus 35 ~~k~K~Laaq~I~kffk----~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~ 110 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFK----HFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDP 110 (556)
T ss_dssp -HHHHHHHHHHHHHHHC----C-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---H
T ss_pred CHHHHHHHHHHHHHHHh----hChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccH
Confidence 45567777777766664 355557778999999999999999999999999998763 335799999999998765
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 001582 952 KTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCL 1003 (1049)
Q Consensus 952 ~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~cl 1003 (1049)
.....+=+.|-.++..-+...|...+..|... ...+..||.-++..|
T Consensus 111 ~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-----~~~de~~Re~~lkFl 157 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-----KSGDEQVRERALKFL 157 (556)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--------HS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----ccCchHHHHHHHHHH
Confidence 54444445554555443333332222222110 123455666666555
No 174
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.61 E-value=32 Score=46.10 Aligned_cols=64 Identities=16% Similarity=0.276 Sum_probs=50.3
Q ss_pred hhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001582 945 LLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1009 (1049)
Q Consensus 945 ~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~ 1009 (1049)
-|.+.+...|+.|+++++.++.... ..+...-+.+.-.....+.|...+||-+++.|.-.++.-
T Consensus 267 eL~se~~~~Rl~a~~lvg~~~~~~~-~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 267 ELLSEQEEVRLKAVKLVGRMFSDKD-SQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHhcchHHHHHHHHHHHHHHHhcch-hhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 3346777888999999999996653 344445567778889999999999999999998877654
No 175
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.36 E-value=14 Score=46.50 Aligned_cols=145 Identities=16% Similarity=0.215 Sum_probs=109.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhh
Q 001582 863 LTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVI 942 (1049)
Q Consensus 863 L~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL 942 (1049)
+...+..+.|+-.-++..||..|+.++++..+.--.+-+.++-.+++.++|...-|--.|...+..++..| |+.+++-+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy-~e~il~dL 807 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY-PEDILPDL 807 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc-chhhHHHH
Confidence 34445555788888999999999999986544433456678888889999988888888888888888885 55677777
Q ss_pred hhhhcc-c-----chhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001582 943 VPLLVT-E-----DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1011 (1049)
Q Consensus 943 ~p~l~s-~-----~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lG 1011 (1049)
.....+ + ++..+++ +.+.+++++.| +-+......++.....++.|++-+-|-.+...+..+|....
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~G-el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVG--EAILKVAQALG-ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred HHHHHhcccCCCccceehHH--HHHHHHHHHhc-cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 664433 2 2333444 77778888887 55567778888999999999999999999999888887663
No 176
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=85.23 E-value=26 Score=40.50 Aligned_cols=179 Identities=12% Similarity=0.138 Sum_probs=112.8
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcC--Ccc-----chHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAN--DHS-----IWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLK 890 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~--~~~-----~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~ 890 (1049)
+..++..|..-+ +|.|+++..-...+++.. +.. +...+-.+++..|+..-++.+... .+=..|++.++
T Consensus 78 l~~Li~~L~~L~---fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRec~k 152 (335)
T PF08569_consen 78 LYLLIRNLPKLD---FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLRECIK 152 (335)
T ss_dssp HHHHHHTGGGS----HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHHHTT
T ss_pred HHHHHHHhhhCC---CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHHHHh
Confidence 445555554443 889999999888888654 211 223333667888888777665322 22234444443
Q ss_pred hhhhhhHHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhc----------CchhhHHhhhhhhcccchhHHHHHH
Q 001582 891 NQKDVMEDS--VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY----------DPFRCLSVIVPLLVTEDEKTLVTCI 958 (1049)
Q Consensus 891 ~~~~~~~~~--~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~----------~p~~~l~vL~p~l~s~~~~t~~~al 958 (1049)
... +..+ -...+-.+++.+..+.=+|...|-.+++.+...- +.++.+.....+|.+.+|=|+..++
T Consensus 153 ~e~--l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 153 HES--LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp SHH--HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred hHH--HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 211 1111 0113445777788888899999999988777542 2345777778888899999999999
Q ss_pred HHHHHHH-hhcCHHHHHhhh--hhHHHHHHHHhcCCCHHHHHHHHHHH
Q 001582 959 NCLTKLV-GRLSQEELMAQL--PSFLPALFEAFGNQSADVRKTVVFCL 1003 (1049)
Q Consensus 959 ~~L~~li-e~~~~~~l~~~L--~~iip~L~~~~~D~~seVRKaAv~cl 1003 (1049)
++|+.++ ++.....+...+ ++-+..+...+.|....|+-.|...+
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvF 278 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVF 278 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence 9999887 555556665554 45566778888899999998886655
No 177
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.12 E-value=4.1 Score=50.17 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=96.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhh
Q 001582 866 VLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV-TKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVP 944 (1049)
Q Consensus 866 Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~-~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p 944 (1049)
+.+.+.|+|+.+|-.++-.+.--.-..++ ...|-.||+. +.|.+..|+++|..+|-.++-. +|+.|..++..
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTgn------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~-dp~~~~s~V~l 596 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTGN------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-DPEQLPSTVSL 596 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccCc------hhhHHHhhcccccccchHHHHHHHHHheeeEec-ChhhchHHHHH
Confidence 44556788888887665443321111111 1246666664 6799999999999999877743 78889888877
Q ss_pred hhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChh
Q 001582 945 LLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNST 1024 (1049)
Q Consensus 945 ~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l~~L~~s 1024 (1049)
+-.+-|.-.|-++--.|+....--|-.+. +..|-..+.|+..-||+.|.-++.-|....-|...|.+..+...
T Consensus 597 Lses~N~HVRyGaA~ALGIaCAGtG~~eA-------i~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~ 669 (929)
T KOG2062|consen 597 LSESYNPHVRYGAAMALGIACAGTGLKEA-------INLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQ 669 (929)
T ss_pred HhhhcChhhhhhHHHHHhhhhcCCCcHHH-------HHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHH
Confidence 76776766666655555543332232222 22234445599999999999999888777777777776665443
Q ss_pred hHHHH
Q 001582 1025 QLRLV 1029 (1049)
Q Consensus 1025 ~~kLL 1029 (1049)
-.++|
T Consensus 670 l~kvI 674 (929)
T KOG2062|consen 670 LEKVI 674 (929)
T ss_pred HHHHh
Confidence 33333
No 178
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=85.02 E-value=8.4 Score=44.62 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-------DSSVREVALSLINEMLKNQKDVMEDSVEIVIE 905 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~-------n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp 905 (1049)
...|.+||..|.. . ..+.+|++-+...+.+. |..+....++++..|+.|..-.+++|+-.++|
T Consensus 192 ~~~r~~aL~sL~t----D------~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip 261 (343)
T cd08050 192 EEKRREALQSLRT----D------PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIP 261 (343)
T ss_pred HHHHHHHHHHhcc----C------CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHH
Confidence 4578888888653 1 23344455555544331 55566667888888998887789999999999
Q ss_pred HHHHHh----------CCCcHHHHHHHHHHHHHHHhhcCch
Q 001582 906 KLLHVT----------KDAVPKVSNEAEHCLTVVLSQYDPF 936 (1049)
Q Consensus 906 ~Ll~~~----------~Ds~~~Vr~aA~~~l~~i~~~~~p~ 936 (1049)
.+|.|+ .+.+-.+|.-|-.++..|+..+...
T Consensus 262 ~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~ 302 (343)
T cd08050 262 SVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS 302 (343)
T ss_pred HHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC
Confidence 999887 2344578999999999999887664
No 179
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=84.97 E-value=23 Score=40.86 Aligned_cols=173 Identities=18% Similarity=0.179 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHh--
Q 001582 835 SKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK-DVMEDSVEIVIEKLLHVT-- 911 (1049)
Q Consensus 835 eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~-~~~~~~~e~lLp~Ll~~~-- 911 (1049)
....++..|...+...+.+.. +.++..+.+.|.|+...+|..-+..+..++.... .....+++.++|.|++.+
T Consensus 39 aL~~~l~al~~~~~~~~~~~~----~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 114 (339)
T PF12074_consen 39 ALSALLSALFKHLFFLSSELP----KKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKE 114 (339)
T ss_pred HHHHHHHHHHHHHHHhCcCCC----HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHH
Confidence 344455555544433222222 3467778888899999899988888888886111 235577777888888766
Q ss_pred --CCCcHHHHHHHHHHHHHHHh-------------------hcCchhhHHhhhhhhccc--chhHHHHHHHHHHHHHhhc
Q 001582 912 --KDAVPKVSNEAEHCLTVVLS-------------------QYDPFRCLSVIVPLLVTE--DEKTLVTCINCLTKLVGRL 968 (1049)
Q Consensus 912 --~Ds~~~Vr~aA~~~l~~i~~-------------------~~~p~~~l~vL~p~l~s~--~~~t~~~al~~L~~lie~~ 968 (1049)
.++........-.++-.++. ...|..-+ .+.+-+-++ ......-+++++..++..+
T Consensus 115 ~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~-ll~~kvyskl~~~~d~~w~~~al~~~~~~~ 193 (339)
T PF12074_consen 115 ASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSF-LLSEKVYSKLASEEDLCWLLRALEALLSDH 193 (339)
T ss_pred HHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcch-hcCHHHHhccCCHhHHHHHHHHHHHHHhcc
Confidence 34433322111111111111 11111100 011111111 1222333455555555554
Q ss_pred CHHHHHhhhhhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhhh
Q 001582 969 SQEELMAQLPSFLPALFEAFGNQ--SADVRKTVVFCLVDIYIMLGK 1012 (1049)
Q Consensus 969 ~~~~l~~~L~~iip~L~~~~~D~--~seVRKaAv~clv~l~~~lGe 1012 (1049)
...........+-..++-.+-++ ..+||+.|+.++..+|..-++
T Consensus 194 ~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~ 239 (339)
T PF12074_consen 194 PSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPE 239 (339)
T ss_pred hhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChH
Confidence 32222111234555667777777 899999999999999886553
No 180
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=84.75 E-value=13 Score=35.54 Aligned_cols=84 Identities=19% Similarity=0.275 Sum_probs=54.6
Q ss_pred hHHhHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHH
Q 001582 855 WTKYFNQILTAVLEVLDD----ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKD--AVPKVSNEAEHCLTV 928 (1049)
Q Consensus 855 w~~~f~~lL~~Ll~~L~D----~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~D--s~~~Vr~aA~~~l~~ 928 (1049)
..++|--|+..+-+.+.| ....-+..++..|.+|++-.+ +++..+.|+++.++.. ..++++..+-+|-..
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~----~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~ 80 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGG----SHISSARPQIMACLQSALEIPELREEALSCWNC 80 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 345666677777777766 445688899999999997333 4455556665554431 124777777777777
Q ss_pred HHhhcCchhhHHhh
Q 001582 929 VLSQYDPFRCLSVI 942 (1049)
Q Consensus 929 i~~~~~p~~~l~vL 942 (1049)
++..++++.+-+++
T Consensus 81 fi~~L~~~~l~~ll 94 (107)
T PF08064_consen 81 FIKTLDEEDLGPLL 94 (107)
T ss_pred HHHHCCHHHHHHHH
Confidence 77777766544433
No 181
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=84.68 E-value=32 Score=40.37 Aligned_cols=167 Identities=17% Similarity=0.233 Sum_probs=101.8
Q ss_pred hhHHHHHHHHHHHHHhcC-CccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 001582 833 PTSKHGALQQLIKASVAN-DHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT 911 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~-~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~ 911 (1049)
..||..||+-++.++... +..... ..+.+.+....++.+-..+..|+.+|.+|+-..+..+... .-+..|++.+
T Consensus 82 ~~ER~QALkliR~~l~~~~~~~~~~---~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~--gG~~~L~~~l 156 (371)
T PF14664_consen 82 DVEREQALKLIRAFLEIKKGPKEIP---RGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAEC--GGIRVLLRAL 156 (371)
T ss_pred hHHHHHHHHHHHHHHHhcCCcccCC---HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHc--CCHHHHHHHH
Confidence 469999999999998663 332222 3467778888888888899999999999997666544322 1234444545
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcCchh----------hHHhhhhhhcc-----cch---hHHHHHHHHHHHHHhhcCHHHH
Q 001582 912 KDAVPKVSNEAEHCLTVVLSQYDPFR----------CLSVIVPLLVT-----EDE---KTLVTCINCLTKLVGRLSQEEL 973 (1049)
Q Consensus 912 ~Ds~~~Vr~aA~~~l~~i~~~~~p~~----------~l~vL~p~l~s-----~~~---~t~~~al~~L~~lie~~~~~~l 973 (1049)
.|..-++ ++.++.+++..++-+. +-.++.|+... ++. .....|-+.+..++..|+- .+
T Consensus 157 ~d~~~~~---~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G-Ll 232 (371)
T PF14664_consen 157 IDGSFSI---SESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG-LL 232 (371)
T ss_pred HhccHhH---HHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc-ee
Confidence 5532334 4444444443332221 22222333322 111 2334667888889999952 21
Q ss_pred Hhhhh--hHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001582 974 MAQLP--SFLPALFEAFGNQSADVRKTVVFCLVDIYI 1008 (1049)
Q Consensus 974 ~~~L~--~iip~L~~~~~D~~seVRKaAv~clv~l~~ 1008 (1049)
.-..+ .-+..|+.++.-+..++|+.....+-.+..
T Consensus 233 ~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 233 YLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred eeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 11111 345678889999999999999998866654
No 182
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=84.51 E-value=45 Score=37.72 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=66.6
Q ss_pred HHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCch--
Q 001582 860 NQILTAVL-EVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-- 936 (1049)
Q Consensus 860 ~~lL~~Ll-~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~-- 936 (1049)
..++..|+ ..+...+..||+.|+++|.-.+--.. ..+...++.++..+......|+..|..++--++..+++.
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~----~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK----ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 34554443 56677888999999999998774333 334444555555553336888888888887666555432
Q ss_pred -------------hhHHhhhhhhcccchhHHHHHHHHHHHHH
Q 001582 937 -------------RCLSVIVPLLVTEDEKTLVTCINCLTKLV 965 (1049)
Q Consensus 937 -------------~~l~vL~p~l~s~~~~t~~~al~~L~~li 965 (1049)
.+++++..++.+.+...+..+.+.+.+|+
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 35566666666666666677777777765
No 183
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=84.32 E-value=3.4 Score=50.83 Aligned_cols=183 Identities=17% Similarity=0.175 Sum_probs=123.4
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhh-h
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV-M 896 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~-~ 896 (1049)
++-+++.+.... -.-|.--|+.+.+++..-.... .-++|+..+...+.|+|..+|+++|..+..|+-.+..+ +
T Consensus 332 ~p~l~kLF~~~D---r~iR~~LL~~i~~~i~~Lt~~~---~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 332 IPVLLKLFKSPD---RQIRLLLLQYIEKYIDHLTKQI---LNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred hhhHHHHhcCcc---hHHHHHHHHhHHHHhhhcCHHh---hcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 455555555442 3577778888777775443332 33568888888899999999999999999999777655 2
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhh-c-ccc--hhHHHHHHHHHHHHHhhcCHHH
Q 001582 897 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLL-V-TED--EKTLVTCINCLTKLVGRLSQEE 972 (1049)
Q Consensus 897 ~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l-~-s~~--~~t~~~al~~L~~lie~~~~~~ 972 (1049)
... ++-.+-....|.+-.+|.--..|+-.|..+..|..--.++..-+ + .++ .+.|.+++..+....+.+...+
T Consensus 406 n~E---llr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~ 482 (690)
T KOG1243|consen 406 NGE---LLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSE 482 (690)
T ss_pred cHH---HHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhh
Confidence 222 22233333458888899998889988888777764222222222 1 122 4677777777666666666555
Q ss_pred HHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh
Q 001582 973 LMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK 1012 (1049)
Q Consensus 973 l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe 1012 (1049)
+. ..|+|.+.-..-|.+..||..|..++-.++..+.+
T Consensus 483 va---~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 483 VA---NKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred hh---hhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 53 34557777778899999999999999887766543
No 184
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=84.24 E-value=8 Score=38.44 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHhhcC
Q 001582 860 NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVTKDA--VPKVSNEAEHCLTVVLSQYD 934 (1049)
Q Consensus 860 ~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~--~e~lLp~Ll~~~~Ds--~~~Vr~aA~~~l~~i~~~~~ 934 (1049)
+..++.|.+.|...|+.+...||.+|..++++.+..|... -..++..|...+.++ .+.|++.+.+.+..|...+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 4467789999999999999999999999999999887633 234566666555443 23499999999999998764
No 185
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=84.22 E-value=44 Score=39.70 Aligned_cols=146 Identities=15% Similarity=0.124 Sum_probs=97.4
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHHhhh-hhhH-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCc-----
Q 001582 864 TAVLEVLD-DADSSVREVALSLINEMLKNQK-DVME-DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP----- 935 (1049)
Q Consensus 864 ~~Ll~~L~-D~n~~vr~~AL~~L~~L~~~~~-~~~~-~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p----- 935 (1049)
+.|+.+|. ...+.+..+++++|..|+.+.+ ++++ .|+-.+...+=..++++...|+-.+...+..|+.--.|
T Consensus 109 r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~ 188 (728)
T KOG4535|consen 109 RCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQ 188 (728)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHH
Confidence 33445554 3456788899999999998765 4454 44555666666666777788888888888877743211
Q ss_pred -------------------hhhHHh------------------------------hhhhhcccc----------------
Q 001582 936 -------------------FRCLSV------------------------------IVPLLVTED---------------- 950 (1049)
Q Consensus 936 -------------------~~~l~v------------------------------L~p~l~s~~---------------- 950 (1049)
....+- +.|.+....
T Consensus 189 ~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~p 268 (728)
T KOG4535|consen 189 LLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEP 268 (728)
T ss_pred HHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCC
Confidence 000000 011111110
Q ss_pred hhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001582 951 EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1011 (1049)
Q Consensus 951 ~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lG 1011 (1049)
.+.+++|+..|+.+...++ -+..++.++.-.+..+|.+.+++|..-+-.|+-++-.-++
T Consensus 269 s~~rle~~qvl~~~a~~~~--~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv 327 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFS--MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLI 327 (728)
T ss_pred chhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHh
Confidence 2478899999988887664 3445777888899999999999999999999977666555
No 186
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=83.06 E-value=5.7 Score=46.72 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=78.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhh-----------hhhHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHH
Q 001582 866 VLEVLDDADSSVREVALSLINEMLKNQK-----------DVMEDSVEIVIEKLLHVT--------KDAVPKVSNEAEHCL 926 (1049)
Q Consensus 866 Ll~~L~D~n~~vr~~AL~~L~~L~~~~~-----------~~~~~~~e~lLp~Ll~~~--------~Ds~~~Vr~aA~~~l 926 (1049)
++-.|+|++...|..||.++..|+...+ +.|.+|.-.+-..+++++ .+....+......|+
T Consensus 52 ~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcl 131 (728)
T KOG4535|consen 52 MTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCL 131 (728)
T ss_pred eEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 4446799999999999999999886322 347777655555554443 466788999999999
Q ss_pred HHHHhhcCchh--------hHHhhhhhhcccchhHHHHHHHHHHHHHhhc
Q 001582 927 TVVLSQYDPFR--------CLSVIVPLLVTEDEKTLVTCINCLTKLVGRL 968 (1049)
Q Consensus 927 ~~i~~~~~p~~--------~l~vL~p~l~s~~~~t~~~al~~L~~lie~~ 968 (1049)
..++.+.|..+ ++.-+.|+|++++.+.++.++-+|+.++..+
T Consensus 132 a~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 132 ANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 99999887764 5666788899999999999998888777543
No 187
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=82.52 E-value=27 Score=45.23 Aligned_cols=148 Identities=17% Similarity=0.115 Sum_probs=96.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHh--hcCchh
Q 001582 861 QILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAV-PKVSNEAEHCLTVVLS--QYDPFR 937 (1049)
Q Consensus 861 ~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~-~~Vr~aA~~~l~~i~~--~~~p~~ 937 (1049)
.++..|+..|.|.+..||..|.+.+..+...++..+ ++.+|..+++.+.--. ...=..|--++..++. ...|..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L---ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL---ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH---HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 356779999999999999999999999999888544 4456666666443111 2222344444444442 356655
Q ss_pred hHHhhhhhhcccch-----------hHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHH-HHhcCCCHHHHHHHHHHHHH
Q 001582 938 CLSVIVPLLVTEDE-----------KTLVTCINCLTKLVGRLSQEELMAQLPSFLPALF-EAFGNQSADVRKTVVFCLVD 1005 (1049)
Q Consensus 938 ~l~vL~p~l~s~~~-----------~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~-~~~~D~~seVRKaAv~clv~ 1005 (1049)
|..++.-++++=.| -+|=.|.-++=.+.-.+.+..+.+.+..+.++|. .++=|++--+|.||-.++-+
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 55444333332111 2333455555566777788888887777777754 56679999999999998866
Q ss_pred HHHHhh
Q 001582 1006 IYIMLG 1011 (1049)
Q Consensus 1006 l~~~lG 1011 (1049)
.....|
T Consensus 498 ~VGR~~ 503 (1133)
T KOG1943|consen 498 NVGRQG 503 (1133)
T ss_pred HhccCC
Confidence 555433
No 188
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.26 E-value=19 Score=44.47 Aligned_cols=142 Identities=20% Similarity=0.262 Sum_probs=100.9
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchH-HHHHHHHHHHH----HHhcCCchhhhHHHHHHHHHH-H---hhcCC
Q 001582 470 LFFQHLDDPHHKVAQAALSTLADIIPSCRKPFE-SYMERILPHVF----SRLIDPKELVRQPCSTTLDIV-S---KTYSV 540 (1049)
Q Consensus 470 ~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~-~~l~~lL~~ll----~klgD~k~~vR~~a~~~L~~~-~---e~~~~ 540 (1049)
++-+.|.-+|+.|-+.|+..+.++.+.-+++.+ .-++.++..=| +-|-|.=..||.-|.+.+-.+ . +..|+
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 456678899999999999999999988887763 34455554433 334788899999775544433 3 55777
Q ss_pred cchHHHHHHhhccC---CCHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHH
Q 001582 541 DSLLPALLRSLDEQ---RSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVY 617 (1049)
Q Consensus 541 d~~l~~L~r~l~~~---~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly 617 (1049)
..+...|-.++++- ..-.||+.+.+-|...+. ++ ..-.-++..++.+-..++|++..||-|+..+|.-|-
T Consensus 258 ~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~----np---~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 258 TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD----NP---LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc----Cc---cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 76666555555542 245899999998875542 22 122457788888888999999999999999986654
Q ss_pred H
Q 001582 618 T 618 (1049)
Q Consensus 618 ~ 618 (1049)
.
T Consensus 331 ~ 331 (1005)
T KOG1949|consen 331 A 331 (1005)
T ss_pred h
Confidence 3
No 189
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.17 E-value=27 Score=43.82 Aligned_cols=168 Identities=13% Similarity=0.164 Sum_probs=110.8
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHHHHhhhhh
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLD-D-ADSSVREVALSLINEMLKNQKDV 895 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~-D-~n~~vr~~AL~~L~~L~~~~~~~ 895 (1049)
|+.|...+.+..- .++|++|+..|-.+.+.....+.... |..|+..|. | .|+.+...+|.++-.++.+-.
T Consensus 24 I~kLcDRvessTL--~eDRR~A~rgLKa~srkYR~~Vga~G----mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd-- 95 (970)
T KOG0946|consen 24 IEKLCDRVESSTL--LEDRRDAVRGLKAFSRKYREEVGAQG----MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD-- 95 (970)
T ss_pred HHHHHHHHhhccc--hhhHHHHHHHHHHHHHHHHHHHHHcc----cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc--
Confidence 6667666655532 68999999999888876544443333 334444443 2 356666677777766664322
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHH--
Q 001582 896 MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEEL-- 973 (1049)
Q Consensus 896 ~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l-- 973 (1049)
+ | +..+|+. ++..-.......++.. ...+..|+..+...|+.+|+.++++++.++...|++.=
T Consensus 96 ~--------~---~v~dds~-qsdd~g~~iae~fik~---qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ 160 (970)
T KOG0946|consen 96 S--------P---EVMDDST-QSDDLGLWIAEQFIKN---QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDA 160 (970)
T ss_pred c--------h---hhcccch-hhhHHHHHHHHHHHcC---chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHH
Confidence 0 0 1224443 5555556666666643 34556677777778999999999999999988875542
Q ss_pred HhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001582 974 MAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1008 (1049)
Q Consensus 974 ~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~ 1008 (1049)
.-..|.=+-.+...++|.---||..|+..|.++..
T Consensus 161 ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k 195 (970)
T KOG0946|consen 161 LLVSPMGISKLMDLLRDSREPIRNEAILLLSELVK 195 (970)
T ss_pred HHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHc
Confidence 22346666778888889989999999988876654
No 190
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=81.83 E-value=11 Score=44.00 Aligned_cols=125 Identities=15% Similarity=0.197 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhC-CCcH--HHHHHHHHHHHHHHhhcCc--------------hh
Q 001582 875 SSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK-DAVP--KVSNEAEHCLTVVLSQYDP--------------FR 937 (1049)
Q Consensus 875 ~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~-Ds~~--~Vr~aA~~~l~~i~~~~~p--------------~~ 937 (1049)
.+.|.+|+++|+.|++..+....+-+..++..+++.+. ++.. .-...|.-.+.+++....- ..
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 34788999999999987666655555556666665432 3322 3334444444555533311 01
Q ss_pred -hHHhhhhhhcc--cchh-HHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 001582 938 -CLSVIVPLLVT--EDEK-TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCL 1003 (1049)
Q Consensus 938 -~l~vL~p~l~s--~~~~-t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~cl 1003 (1049)
+-..+.|-|+. ...| .+..|++++...-..++++. +..++|.++.++.+.+.-|+.-|-.|+
T Consensus 305 Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~----l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQ----LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHH----HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 23334555541 1223 45678999988887777654 466779999999999988888776664
No 191
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=81.68 E-value=18 Score=36.89 Aligned_cols=50 Identities=20% Similarity=0.420 Sum_probs=37.2
Q ss_pred CCHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCC--CCchhhhhhHHHHHHHHHH
Q 001582 420 ASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGP--KGIQEVIQNFEKVMKLFFQ 473 (1049)
Q Consensus 420 ~~l~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~--~~~~~v~~~l~~l~~~l~~ 473 (1049)
.++.++++ ++.|+.=|||.+||+.|..++.+.+ ..+.. .+...+++.|.+
T Consensus 4 ~~i~~~~~--~L~S~k~keR~~al~~L~~il~~~~~~~~l~~--k~~~~ifeaL~~ 55 (155)
T PF11640_consen 4 LDINSILR--LLSSDKIKERNKALEDLRHILSSPPRVDSLND--KQWHSIFEALFR 55 (155)
T ss_pred chHHHHHH--HHhccccchHHHHHHHHHHHHcCccccccCCc--chHHHHHHHHHH
Confidence 46778888 7899999999999999999998753 22221 345666666655
No 192
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=81.56 E-value=1.6 Score=34.34 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHH
Q 001582 978 PSFLPALFEAFGNQSADVRKTVVFCL 1003 (1049)
Q Consensus 978 ~~iip~L~~~~~D~~seVRKaAv~cl 1003 (1049)
+.++..+.+.+.|.++.||+||+..+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 57888999999999999999999753
No 193
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.28 E-value=69 Score=36.90 Aligned_cols=165 Identities=21% Similarity=0.248 Sum_probs=89.6
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHHHhcCCcc--chHHhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhhhh
Q 001582 820 QILHLMCNGNDGSPTSKHGALQQLIKASVANDHS--IWTKYFNQILTAVLEVLD-DADSSVREVALSLINEMLKNQKDVM 896 (1049)
Q Consensus 820 ~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~--~w~~~f~~lL~~Ll~~L~-D~n~~vr~~AL~~L~~L~~~~~~~~ 896 (1049)
-++..+.+.+ .+-|..|+.-|..++..+... ...+.+ .+..|+.+|. |.+-.+|..||..+..++++.....
T Consensus 128 ~ll~~l~~~~---~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~--~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~ 202 (342)
T KOG2160|consen 128 PLLGYLENSD---AELRELAARVIGTAVQNNPKSQEQVIELG--ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQ 202 (342)
T ss_pred HHHHHhcCCc---HHHHHHHHHHHHHHHhcCHHHHHHHHHcc--cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHH
Confidence 3444554443 678999999888888766432 222222 4566666665 3445588999999999999887765
Q ss_pred HHHHHH-HHHHHHHHhCCC--cHHHHHHHHHHHHHHHhhcCch-------hhHHhhhhhhcccchhHHHHHHHHHHHHHh
Q 001582 897 EDSVEI-VIEKLLHVTKDA--VPKVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLVTEDEKTLVTCINCLTKLVG 966 (1049)
Q Consensus 897 ~~~~e~-lLp~Ll~~~~Ds--~~~Vr~aA~~~l~~i~~~~~p~-------~~l~vL~p~l~s~~~~t~~~al~~L~~lie 966 (1049)
..|... =.-.|++++.++ ....+..+...+..++..-... ....++..++...++..+..|+..+-.++.
T Consensus 203 ~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 203 DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 555321 133344555443 3444555555666555432111 122223333334566666666655544443
Q ss_pred hcCHHH-H---HhhhhhHHHHHHHHhc
Q 001582 967 RLSQEE-L---MAQLPSFLPALFEAFG 989 (1049)
Q Consensus 967 ~~~~~~-l---~~~L~~iip~L~~~~~ 989 (1049)
...... + ...+.+++....+.+.
T Consensus 283 ~~~~~~~~~~~~~~l~e~l~~~~q~~~ 309 (342)
T KOG2160|consen 283 ELSTRKELFVSLLNLEELLKSLIQIIS 309 (342)
T ss_pred HHhhcchhhhhhhhHHHHHHHHHHHHH
Confidence 332221 1 2234455555555554
No 194
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=80.96 E-value=58 Score=37.38 Aligned_cols=135 Identities=15% Similarity=0.236 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHHHhhcCch------hhHHhhh
Q 001582 878 REVALSLINEMLKNQKD---VMEDSVEIVIEKLLHVTKDAV-----PKVSNEAEHCLTVVLSQYDPF------RCLSVIV 943 (1049)
Q Consensus 878 r~~AL~~L~~L~~~~~~---~~~~~~e~lLp~Ll~~~~Ds~-----~~Vr~aA~~~l~~i~~~~~p~------~~l~vL~ 943 (1049)
+..-|+++...+.+... -.+.++..++..++.-+.++. ++|..-...+++.+-..+.+. .++....
T Consensus 44 KkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl 123 (319)
T PF08767_consen 44 KKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTL 123 (319)
T ss_dssp HHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 44445555555543321 123444444444444444333 344444444444443333332 2444555
Q ss_pred hhhcc--cchh-HHHHHHHHHHHHHhhcCHHHH---HhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh
Q 001582 944 PLLVT--EDEK-TLVTCINCLTKLVGRLSQEEL---MAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK 1012 (1049)
Q Consensus 944 p~l~s--~~~~-t~~~al~~L~~lie~~~~~~l---~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe 1012 (1049)
+++.. .++| .+..-.++|..+++.+...-+ ......++..+..++.|++.+|-..+..++-.+..-+.+
T Consensus 124 ~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 124 PMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 66643 2455 456667999988887743332 234577899999999999999999999999888877765
No 195
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=80.72 E-value=28 Score=39.99 Aligned_cols=155 Identities=18% Similarity=0.222 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcCC-cc-chHHhHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHhhhhhhHHHHHH----HHHHHH
Q 001582 836 KHGALQQLIKASVAND-HS-IWTKYFNQILTAVLEVLDDADSSVRE-VALSLINEMLKNQKDVMEDSVEI----VIEKLL 908 (1049)
Q Consensus 836 R~~aL~~L~~li~~~~-~~-~w~~~f~~lL~~Ll~~L~D~n~~vr~-~AL~~L~~L~~~~~~~~~~~~e~----lLp~Ll 908 (1049)
|++.|+-+..++.... .. .+......++..++.--.+..+..|+ ..|.++..|++..+..+.+++.. ++...+
T Consensus 44 KkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl 123 (319)
T PF08767_consen 44 KKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTL 123 (319)
T ss_dssp HHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 5566666666664332 22 22333344444444433445555554 45889999998888765555444 444444
Q ss_pred HHhC---CCcHHHHHHHHHHHHHHHhhcC-------chh---hHHhhhhhhcccchhHHHHHHHHHHHHHhhcCH---HH
Q 001582 909 HVTK---DAVPKVSNEAEHCLTVVLSQYD-------PFR---CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQ---EE 972 (1049)
Q Consensus 909 ~~~~---Ds~~~Vr~aA~~~l~~i~~~~~-------p~~---~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~---~~ 972 (1049)
+.+. ..-++.|..--..++.++..|. ++. ++..+.=++++.+..+-..|++.|..+++.+.. +.
T Consensus 124 ~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~ 203 (319)
T PF08767_consen 124 PMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEF 203 (319)
T ss_dssp HHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHH
T ss_pred HHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4443 2458999998888888888753 322 344444444555566667888888888877654 22
Q ss_pred H----HhhhhhHHHHHHHHhcC
Q 001582 973 L----MAQLPSFLPALFEAFGN 990 (1049)
Q Consensus 973 l----~~~L~~iip~L~~~~~D 990 (1049)
. ....-.++..++..+-|
T Consensus 204 ~~~F~~~y~~~il~~if~vltD 225 (319)
T PF08767_consen 204 ANQFYQQYYLDILQDIFSVLTD 225 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
Confidence 1 22333444555555544
No 196
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=80.42 E-value=14 Score=45.13 Aligned_cols=145 Identities=13% Similarity=0.169 Sum_probs=98.3
Q ss_pred CHHHHHhcCCCCC-CChHHHHHHHHHH---HHHHhcCCCCchhhhhhHHHHHHH----HHHhhC--------CCcHHHHH
Q 001582 421 SLSDALSEGLSPS-SDWCARVSAFNYL---RSLLQQGPKGIQEVIQNFEKVMKL----FFQHLD--------DPHHKVAQ 484 (1049)
Q Consensus 421 ~l~e~l~~g~~~s-~~WkeR~egL~~L---~~ll~~~~~~~~~v~~~l~~l~~~----l~~~l~--------Dsn~kV~~ 484 (1049)
.+..++.+|+-++ .+=|-|..|++.+ ...+..... ..++.+... +.+.+. -.+.+.-+
T Consensus 319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~------~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~ 392 (501)
T PF13001_consen 319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISP------QILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRS 392 (501)
T ss_pred cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCH------HHHHHHHHHHHhcCccccccccccCCCcccHHHHH
Confidence 4566666644433 3678899999999 877776553 123333333 233332 12446788
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhhcCCcc-----hHHHHHHhhc-c---CC
Q 001582 485 AALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDS-----LLPALLRSLD-E---QR 555 (1049)
Q Consensus 485 ~aL~tL~~l~~~~~~~~~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~d~-----~l~~L~r~l~-~---~~ 555 (1049)
.+-++||.|+..+...|.+- ..++..||..|.+.-+.+|..+++||..|..+|..-. ....+...+. . ..
T Consensus 393 ~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~ 471 (501)
T PF13001_consen 393 LAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSE 471 (501)
T ss_pred HHHHHHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccch
Confidence 99999999999998888322 5677889999977777899999999999998877522 2222222222 1 13
Q ss_pred CHHHHHHHHHHHHHHhh
Q 001582 556 SPKAKLAVIEFAISSLN 572 (1049)
Q Consensus 556 ~pkvk~~~L~~l~~~l~ 572 (1049)
.+.+|-.+++|+...|.
T Consensus 472 ~~~~R~~avk~an~~fp 488 (501)
T PF13001_consen 472 VRSCRYAAVKYANACFP 488 (501)
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 46899999999987654
No 197
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=80.37 E-value=22 Score=34.00 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=56.3
Q ss_pred chHHhHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHH
Q 001582 854 IWTKYFNQILTAVLEVLDDAD----SSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKD--AVPKVSNEAEHCLT 927 (1049)
Q Consensus 854 ~w~~~f~~lL~~Ll~~L~D~n----~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~D--s~~~Vr~aA~~~l~ 927 (1049)
+..++|--|+..+-+.+.|.+ ..-+..++..+.+|.+-.+ +++..++|++..++.. ..++.+..+-.|-.
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g----~~i~~a~pQI~acL~saL~~~eL~~~al~~W~ 79 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMG----KHISSALPQIMACLQSALEIPELRSLALRCWH 79 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 345677777777888887755 2358899999999998544 4555566666554431 23668888888888
Q ss_pred HHHhhcCchhhHH
Q 001582 928 VVLSQYDPFRCLS 940 (1049)
Q Consensus 928 ~i~~~~~p~~~l~ 940 (1049)
.++..++.+.+-+
T Consensus 80 ~~i~~L~~~~l~~ 92 (107)
T smart00802 80 VLIKTLKEEELGP 92 (107)
T ss_pred HHHHhCCHHHHHH
Confidence 8877777655433
No 198
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.13 E-value=71 Score=40.30 Aligned_cols=137 Identities=21% Similarity=0.328 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHHHHHhcCC------ccc----hHHhH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhh
Q 001582 833 PTSKHGALQQLIKASVAND------HSI----WTKYF-------NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV 895 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~------~~~----w~~~f-------~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~ 895 (1049)
++--+.+|+-+..++..+. ... ....| ...+..|+..++..|--||..+..+|..|+...+..
T Consensus 77 ~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e 156 (970)
T KOG0946|consen 77 PEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTE 156 (970)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHH
Confidence 5666677777766664442 111 11111 223455777777788899999999999999988876
Q ss_pred hHHH---HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchh-------hHHhhhhhhccc---ch-hHHHHHHHHH
Q 001582 896 MEDS---VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR-------CLSVIVPLLVTE---DE-KTLVTCINCL 961 (1049)
Q Consensus 896 ~~~~---~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~-------~l~vL~p~l~s~---~~-~t~~~al~~L 961 (1049)
+... ...-|-++++.+.|+...||++|.-.+-.++..++.-+ .|.-|..+|... +. -+..-|+.+|
T Consensus 157 ~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll 236 (970)
T KOG0946|consen 157 LQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILL 236 (970)
T ss_pred HHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 6544 23457788899999999999999999988887765432 445555555432 22 3445788888
Q ss_pred HHHHhhcC
Q 001582 962 TKLVGRLS 969 (1049)
Q Consensus 962 ~~lie~~~ 969 (1049)
..|++...
T Consensus 237 ~NLLK~N~ 244 (970)
T KOG0946|consen 237 NNLLKNNI 244 (970)
T ss_pred HHHHhhCc
Confidence 88876543
No 199
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=80.08 E-value=9.5 Score=40.53 Aligned_cols=89 Identities=15% Similarity=0.191 Sum_probs=61.0
Q ss_pred HHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHH
Q 001582 923 EHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFC 1002 (1049)
Q Consensus 923 ~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~c 1002 (1049)
..++..++... ....+.+..++.+++.=.+..++-++...+.. ..++.++..+...++|.+--||++.-.+
T Consensus 108 ~~~~~~~~~~~--~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~~d~~~~vq~ai~w~ 178 (213)
T PF08713_consen 108 SKLLGPLLKKH--PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALLKDEEYYVQKAIGWA 178 (213)
T ss_dssp HHHHHHHHHHH--GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCTTGS-HHHHHHHHHH
T ss_pred HHHHHHHHHhh--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 45555554333 45677778888877644444555444333433 3445666778888999999999999999
Q ss_pred HHHHHHHhhhhHHHhhhc
Q 001582 1003 LVDIYIMLGKAFLPYLER 1020 (1049)
Q Consensus 1003 lv~l~~~lGe~l~p~l~~ 1020 (1049)
|-.+...-.+.+.+||..
T Consensus 179 L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 179 LREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHH
Confidence 999998888888999866
No 200
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.77 E-value=41 Score=44.09 Aligned_cols=121 Identities=16% Similarity=0.184 Sum_probs=76.3
Q ss_pred HhCCCcHHHHHHHHH-HHHHHHhhcCch-----------hhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhh
Q 001582 910 VTKDAVPKVSNEAEH-CLTVVLSQYDPF-----------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL 977 (1049)
Q Consensus 910 ~~~Ds~~~Vr~aA~~-~l~~i~~~~~p~-----------~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L 977 (1049)
..+...=.+|++..+ |.+.++....-+ .++.++..-+..-..-+|..++....++++.+.... ...
T Consensus 320 lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~--~~~ 397 (1251)
T KOG0414|consen 320 LLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPL--GSR 397 (1251)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCc--cHH
Confidence 333334566777655 445555544321 144444444444445566677777778776653222 345
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHH-HHHHHHHhh
Q 001582 978 PSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRL-VTIYANRIS 1037 (1049)
Q Consensus 978 ~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l~~L~~s~~kL-L~~yi~R~~ 1037 (1049)
.+++..++..+.|.++-|||+|+..+..+... -||...++...++- ++.|.++..
T Consensus 398 ~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~-----~Pfs~~~~~~~~~~~~E~~~~~~e 453 (1251)
T KOG0414|consen 398 TEVLELAIGRLEDKSSLVRKNAIQLLSSLLDR-----HPFSSELRSDDLRAKLEKELQKLE 453 (1251)
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHHHhc-----CCchhhhcchhhhhhHHHHHHhhh
Confidence 67788899999999999999999998776533 36776776665443 777776654
No 201
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.37 E-value=23 Score=43.78 Aligned_cols=143 Identities=19% Similarity=0.193 Sum_probs=94.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH----HHHhhcCc
Q 001582 865 AVLEVLDDADSSVREVALSLINEMLKNQK-----DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLT----VVLSQYDP 935 (1049)
Q Consensus 865 ~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~-----~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~----~i~~~~~p 935 (1049)
.|...|...|..||..|+.++-+++--.+ ..++..++.-...+...+.|..+.||..|..-+- .+...+||
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 46667788999999999988887762111 1233334444445556668998999888776543 33455777
Q ss_pred hhhHHhhhhhhcc--c--chhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 001582 936 FRCLSVIVPLLVT--E--DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIML 1010 (1049)
Q Consensus 936 ~~~l~vL~p~l~s--~--~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~l 1010 (1049)
.-+.+++.-++.. . ....|...++.|..++. -......+..++|.|--.+.|....||-|+|.-+..|-.+-
T Consensus 258 ~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~---np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr 333 (1005)
T KOG1949|consen 258 TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD---NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVR 333 (1005)
T ss_pred HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc---CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhh
Confidence 7666655554432 1 12345555676666653 23334567778899999999999999999999887665443
No 202
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.28 E-value=5.7 Score=42.19 Aligned_cols=67 Identities=19% Similarity=0.319 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh---hhHHHhhhcC
Q 001582 954 LVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG---KAFLPYLERL 1021 (1049)
Q Consensus 954 ~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lG---e~l~p~l~~L 1021 (1049)
+..|-.-++.|+.+.+ +.+.+.||.++..|..++...|-+|-+.+.+.|..+....| .+++||.-+|
T Consensus 131 rf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPfYRQl 200 (262)
T KOG3961|consen 131 RFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPFYRQL 200 (262)
T ss_pred chhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhHHHHh
Confidence 3344444455565655 55568999999999999999999999999999888776655 6788887653
No 203
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=78.99 E-value=33 Score=42.54 Aligned_cols=168 Identities=18% Similarity=0.203 Sum_probs=91.0
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhhh
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA----DSSVREVALSLINEMLKNQK 893 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~----n~~vr~~AL~~L~~L~~~~~ 893 (1049)
+.-+.+++.... -+..+...++..+...+..... +++..+++.+.+. +..++..|+-.+..|+....
T Consensus 359 ~~~i~~~i~~~~-~~~~ea~~~~~~~~~~~~~Pt~--------~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c 429 (574)
T smart00638 359 LKFIKQWIKNKK-ITPLEAAQLLAVLPHTARYPTE--------EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYC 429 (574)
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHHhhhcCCH--------HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHh
Confidence 444555554432 1133555555555555433332 3456676776653 35578888877777775322
Q ss_pred hhh----HHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhc-cc--chhHHHHHHHHHH
Q 001582 894 DVM----EDSVEIVIEKLLHVTK----DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV-TE--DEKTLVTCINCLT 962 (1049)
Q Consensus 894 ~~~----~~~~e~lLp~Ll~~~~----Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~-s~--~~~t~~~al~~L~ 962 (1049)
..- ..-++.++++|.+.++ +...+ ....+|++|- +..-...+.++.|++. .. ....+..|+..|.
T Consensus 430 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~~LkaLG-N~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr 505 (574)
T smart00638 430 VNTPSCPDFVLEELLKYLHELLQQAVSKGDEE---EIQLYLKALG-NAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALR 505 (574)
T ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHhcCCch---heeeHHHhhh-ccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 111 0112334444444332 22111 2233455544 3344566777888886 22 2357889999998
Q ss_pred HHHhhcCHHHHHhhhhhHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Q 001582 963 KLVGRLSQEELMAQLPSFLPALFEAFG--NQSADVRKTVVFCLVDI 1006 (1049)
Q Consensus 963 ~lie~~~~~~l~~~L~~iip~L~~~~~--D~~seVRKaAv~clv~l 1006 (1049)
++.+.++...- +.+..-+. +.++|||-+|+..|...
T Consensus 506 ~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 506 NLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHHhCchHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 88776653322 22333443 47899999999888543
No 204
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=78.29 E-value=31 Score=39.86 Aligned_cols=100 Identities=13% Similarity=0.271 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHHHhcCC---ccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhh--hhHHHHH--HHHH
Q 001582 833 PTSKHGALQQLIKASVAND---HSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD--VMEDSVE--IVIE 905 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~---~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~--~~~~~~e--~lLp 905 (1049)
.+--.+|+..+.+++..+. .++...||++....+...|...|=.++.++|.+|.+|+.+... -+..|+. .-|-
T Consensus 178 Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLk 257 (335)
T PF08569_consen 178 FDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLK 257 (335)
T ss_dssp HHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHH
T ss_pred cHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHH
Confidence 6677778888888776553 3567889999999998999999999999999999999975442 2446632 3566
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHhh
Q 001582 906 KLLHVTKDAVPKVSNEAEHCLTVVLSQ 932 (1049)
Q Consensus 906 ~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~ 932 (1049)
.++..+.|+.+.|+-.|-...+.++.+
T Consensus 258 l~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 258 LMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 677888999999999999999998876
No 205
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=77.82 E-value=49 Score=37.65 Aligned_cols=148 Identities=14% Similarity=0.169 Sum_probs=75.6
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhhh
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD----ADSSVREVALSLINEMLKNQK 893 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D----~n~~vr~~AL~~L~~L~~~~~ 893 (1049)
...++..+... ++.-...++.-|..++..+....-. .-..++..++.+|.+ .+..+...|+.+|..|++...
T Consensus 107 ~~~fl~ll~~~---D~~i~~~a~~iLt~Ll~~~~~~~~~-~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~ 182 (312)
T PF03224_consen 107 YSPFLKLLDRN---DSFIQLKAAFILTSLLSQGPKRSEK-LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE 182 (312)
T ss_dssp HHHHHHH-S-S---SHHHHHHHHHHHHHHHTSTTT--HH-HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH
T ss_pred HHHHHHHhcCC---CHHHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch
Confidence 55666644333 2677788888888888766543322 113455666666654 445577889999999997655
Q ss_pred hhhHHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHhhcCch--------hhHHhhhhhhc-ccchhHHHHHHH
Q 001582 894 DVMEDSVEIVIEKLLHVT-----KDAVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLV-TEDEKTLVTCIN 959 (1049)
Q Consensus 894 ~~~~~~~e~lLp~Ll~~~-----~Ds~~~Vr~aA~~~l~~i~~~~~p~--------~~l~vL~p~l~-s~~~~t~~~al~ 959 (1049)
.+..=+-...++.|++.+ .++...+.-.=+.++-.|.-.+.+. .+++.|..+++ +.+.++...|+-
T Consensus 183 ~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 183 YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHH
Confidence 431111133344444433 2333333333334444454444443 25555666664 345666666777
Q ss_pred HHHHHHhhcC
Q 001582 960 CLTKLVGRLS 969 (1049)
Q Consensus 960 ~L~~lie~~~ 969 (1049)
.+..+++.-.
T Consensus 263 ~l~Nl~~~~~ 272 (312)
T PF03224_consen 263 ILRNLLSKAP 272 (312)
T ss_dssp HHHHTTSSSS
T ss_pred HHHHHHhccH
Confidence 7777765544
No 206
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=77.74 E-value=35 Score=40.72 Aligned_cols=70 Identities=14% Similarity=0.253 Sum_probs=49.3
Q ss_pred hhHHhhhhhhc-ccchhHHHHHHHHHHHHHhhcC--HHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001582 937 RCLSVIVPLLV-TEDEKTLVTCINCLTKLVGRLS--QEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1008 (1049)
Q Consensus 937 ~~l~vL~p~l~-s~~~~t~~~al~~L~~lie~~~--~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~ 1008 (1049)
.+++.|..++. +.+..+...|+.=++.++..++ ...+. .+. .-..+.+.++|.|++||+.|..|+-.++.
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~-~lg-~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVE-QLG-GKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHH-HcC-cHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 46777788874 4455566566666788888873 44443 232 23458899999999999999999987753
No 207
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.39 E-value=38 Score=43.84 Aligned_cols=158 Identities=19% Similarity=0.168 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHH
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYF-NQILTAVLEVLDDA-DSSVREVALSLINEMLKNQK-DVMEDSVEIVIEKLLH 909 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f-~~lL~~Ll~~L~D~-n~~vr~~AL~~L~~L~~~~~-~~~~~~~e~lLp~Ll~ 909 (1049)
.|+|..|.--|..++.... ..-..+| +.++..+++.|.|. .+-.|.=.+.+|..|-++.. .+|..--...-.+|+.
T Consensus 571 ~EqrtmaAFVLAviv~nf~-lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFK-LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred HHHHHHHHHHHHHHHcccc-hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 4677777776766664421 1112233 45677789999985 56688888888888887654 4454434456778888
Q ss_pred HhCCCcHHHHHHHHHHHHHHHhhcC---chhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHH
Q 001582 910 VTKDAVPKVSNEAEHCLTVVLSQYD---PFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFE 986 (1049)
Q Consensus 910 ~~~Ds~~~Vr~aA~~~l~~i~~~~~---p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~ 986 (1049)
.+.|+.++||.+|.=|+.+++.... .++.. ++-..| .|......+|. ......-.++.
T Consensus 650 ~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~-~~~~~~----------~l~~~~~~~E~--------~i~~~~~~ll~ 710 (1387)
T KOG1517|consen 650 LLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTL-VVEEEI----------DLDDERTSIED--------LIIKGLMSLLA 710 (1387)
T ss_pred HhcCccHHHHHHHHHHHHHHhcccccccchhhh-hhhhhh----------cchhhhhhHHH--------HHHhhHHHHHH
Confidence 8999999999999999999997631 11110 000000 01111111111 11111124567
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhhh
Q 001582 987 AFGNQSADVRKTVVFCLVDIYIMLGK 1012 (1049)
Q Consensus 987 ~~~D~~seVRKaAv~clv~l~~~lGe 1012 (1049)
.+.|..+-||+..+.++. +.++|.
T Consensus 711 ~vsdgsplvr~ev~v~ls--~~~~g~ 734 (1387)
T KOG1517|consen 711 LVSDGSPLVRTEVVVALS--HFVVGY 734 (1387)
T ss_pred HHhccchHHHHHHHHHHH--HHHHhh
Confidence 788999999999888875 445563
No 208
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=77.28 E-value=14 Score=38.06 Aligned_cols=146 Identities=14% Similarity=0.257 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH--HHhh
Q 001582 858 YFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT--KDAVPKVSNEAEHCLTV--VLSQ 932 (1049)
Q Consensus 858 ~f~~lL~~Ll~~L~D~-n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~--~Ds~~~Vr~aA~~~l~~--i~~~ 932 (1049)
.|-+||..|+.+|+.. +..+|..++++|.-|= .+++|.-..+..-.+.. .+..........-.... -.+.
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG-----ALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee 81 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILG-----ALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEE 81 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-----ccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHH
Confidence 3667888899988654 4779999999988752 24554322111111100 01111111100000000 0111
Q ss_pred cCchhhHHhhhhhhcccchhH-HHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001582 933 YDPFRCLSVIVPLLVTEDEKT-LVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1009 (1049)
Q Consensus 933 ~~p~~~l~vL~p~l~s~~~~t-~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~ 1009 (1049)
+=|.-++..|+.+++...... -..++..+..+++..+... .+.|+.++|.+...+...++..|..-..-|..+...
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 112234555555554322111 1245666667777777665 589999999999999988888887766666655544
No 209
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=76.75 E-value=13 Score=38.43 Aligned_cols=83 Identities=14% Similarity=0.218 Sum_probs=66.7
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCchhhhhcHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhChHHHHHHHhcCCHHHH
Q 001582 48 DRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQ 127 (1049)
Q Consensus 48 ~Ks~~~R~~~~~~l~~~L~~w~~~~~le~~~~~le~~ikk~l~DA~~~vR~~aR~~fw~f~~~~P~~a~~l~~~Ld~~~q 127 (1049)
|-.-.+|..|+|.|+.+|...... + .+..+-+.|..|+.| +.++|..+-...-.+....|+.-..-+..|-...+
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~--~--~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~ 112 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSR--I--DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLR 112 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSS--S---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHh--C--CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 345689999999999999976553 3 256678889999999 99999999999999999999999988899999999
Q ss_pred HHHhhccC
Q 001582 128 RIINEEDG 135 (1049)
Q Consensus 128 k~L~~~~~ 135 (1049)
+.|....+
T Consensus 113 ~~L~~k~k 120 (169)
T PF08623_consen 113 KTLSKKLK 120 (169)
T ss_dssp HHHH----
T ss_pred HHhhccCC
Confidence 99987643
No 210
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.73 E-value=2.3e+02 Score=36.37 Aligned_cols=185 Identities=19% Similarity=0.245 Sum_probs=112.6
Q ss_pred CHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCC-CchhhhhhHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHHHHhcC
Q 001582 421 SLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPK-GIQEVIQNFEKVMKLFFQHLDD-PHHKVAQAALSTLADIIPSCR 498 (1049)
Q Consensus 421 ~l~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~-~~~~v~~~l~~l~~~l~~~l~D-sn~kV~~~aL~tL~~l~~~~~ 498 (1049)
.+...|. |+-+.+|=..-+|+|.+|-+.|--++. .+.- --.+-++..|...|.+ .|+-+.-.|...|..+..+++
T Consensus 168 k~kkLL~-gL~~~~Des~Qleal~Elce~L~mgnEesLs~--fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 168 KAKKLLQ-GLQAESDESQQLEALTELCEMLSMGNEESLSG--FPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHHH-hccccCChHHHHHHHHHHHHHHhhcchhhhcc--ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc
Confidence 4555665 455666888899999999888875554 2221 1356788888888875 778899999999999999998
Q ss_pred cchHHHHH-HHHHHHHHHh--cCCchhhhHHHHHHHHHHHhhcCCcc----hHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q 001582 499 KPFESYME-RILPHVFSRL--IDPKELVRQPCSTTLDIVSKTYSVDS----LLPALLRSLDEQRSPKAKLAVIEFAISSL 571 (1049)
Q Consensus 499 ~~~~~~l~-~lL~~ll~kl--gD~k~~vR~~a~~~L~~~~e~~~~d~----~l~~L~r~l~~~~~pkvk~~~L~~l~~~l 571 (1049)
.-..--++ -.+|.|+.|| ..--+ |=+.+..||+.|....+-+. .+.+.+.|++=...--.|+|+-- ++ ..
T Consensus 245 ~S~a~vV~~~aIPvl~~kL~~IeyiD-vAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~Alai-aa-N~ 321 (1051)
T KOG0168|consen 245 RSSAIVVDEHAIPVLLEKLLTIEYID-VAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAI-AA-NC 321 (1051)
T ss_pred chhheeecccchHHHHHhhhhhhhhH-HHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHH-HH-HH
Confidence 65543333 3567777777 23333 55688888998876655443 23333344432233334554432 21 23
Q ss_pred hhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHH
Q 001582 572 NKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIIS 615 (1049)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ 615 (1049)
.. .+.+++| ..+-..++-+.++++--..++-+.++.|+.-
T Consensus 322 Ck-si~sd~f---~~v~ealPlL~~lLs~~D~k~ies~~ic~~r 361 (1051)
T KOG0168|consen 322 CK-SIRSDEF---HFVMEALPLLTPLLSYQDKKPIESVCICLTR 361 (1051)
T ss_pred Hh-cCCCccc---hHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 22 3455555 2344556666777765444455555555533
No 211
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=76.65 E-value=15 Score=44.28 Aligned_cols=147 Identities=14% Similarity=0.207 Sum_probs=82.0
Q ss_pred HHHHHhcCCCCchhhhhhHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhcCCchh
Q 001582 446 LRSLLQQGPKGIQEVIQNFEKVMKLFFQHL---DDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKEL 522 (1049)
Q Consensus 446 L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l---~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~~ll~klgD~k~~ 522 (1049)
+..+|+.|.. .++.+|+.....++ +|--++++--++.+|....+ .....|+..|.-.|++.-| .++
T Consensus 361 ITtLLKTGt~------e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp---~k~~s~l~FL~~~L~~eGg--~eF 429 (898)
T COG5240 361 ITTLLKTGTE------ETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFP---SKKLSYLDFLGSSLLQEGG--LEF 429 (898)
T ss_pred HHHHHHcCch------hhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCc---HHHHHHHHHHHHHHHhccc--chH
Confidence 3455655543 24556665554444 55445565556666655443 3446677777777776443 222
Q ss_pred hhHHHHHHHHHHHhhcC--CcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhHccccCC
Q 001582 523 VRQPCSTTLDIVSKTYS--VDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHD 600 (1049)
Q Consensus 523 vR~~a~~~L~~~~e~~~--~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~D 600 (1049)
+..+..++--+++..| -+..+..|+.|+.|-+-++.-+.+|.-|-+ +++.. ..-...+.+|+.-+-=
T Consensus 430 -K~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~---------EgP~a-~~P~~yvrhIyNR~iL 498 (898)
T COG5240 430 -KKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGR---------EGPRA-KTPGKYVRHIYNRLIL 498 (898)
T ss_pred -HHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcc---------cCCCC-CCcchHHHHHHHHHHH
Confidence 2344444544555543 366788888888777777777777765532 11111 1112445555554444
Q ss_pred CCHHHHHHHHHHHH
Q 001582 601 KNTKLKEAAITCII 614 (1049)
Q Consensus 601 kn~~VR~aA~~~L~ 614 (1049)
-|.-||.||..+|.
T Consensus 499 EN~ivRsaAv~aLs 512 (898)
T COG5240 499 ENNIVRSAAVQALS 512 (898)
T ss_pred hhhHHHHHHHHHHH
Confidence 57778888888773
No 212
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.20 E-value=70 Score=41.22 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=52.9
Q ss_pred hhcccchhHHHHHHHHHHHHH---hhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh
Q 001582 945 LLVTEDEKTLVTCINCLTKLV---GRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK 1012 (1049)
Q Consensus 945 ~l~s~~~~t~~~al~~L~~li---e~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe 1012 (1049)
+|.+++-.+++.+|++|..-+ ..+ .+.+.+.+....|.|+.++.+.++-+=..|..|+-.+....|+
T Consensus 811 ~LS~e~l~irvkaLdvl~~gl~~La~~-~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 811 LLSHESLRIRVKALDVLSLGLPLLATY-HNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HhcchhHHHHHHHHHHHHhccHHHhcc-chhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 334566677888888876433 222 4666677778899999999999999999999999999999985
No 213
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=76.03 E-value=30 Score=43.16 Aligned_cols=122 Identities=18% Similarity=0.236 Sum_probs=77.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchh--hH
Q 001582 862 ILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR--CL 939 (1049)
Q Consensus 862 lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~--~l 939 (1049)
.+..|.+.-.|.=..|+.++|.+|-.|+.+.+..= ..+|-.|++++||+...|...|.-.|..|...-|.-+ ++
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE----~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi 380 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE----NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVVI 380 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH----HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeehH
Confidence 33344444456667799999999999998776542 1367778899999999999999888887776544433 22
Q ss_pred Hhhhhhhc--ccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHH
Q 001582 940 SVIVPLLV--TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEA 987 (1049)
Q Consensus 940 ~vL~p~l~--s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~ 987 (1049)
.-|..++= .-++++...++.+|..++-.+....+...|-.|.=++++-
T Consensus 381 ~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lFk~ 430 (988)
T KOG2038|consen 381 DEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLFKT 430 (988)
T ss_pred HHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHHHH
Confidence 22222221 1234555566677776665555555655555544444443
No 214
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=75.71 E-value=14 Score=35.29 Aligned_cols=67 Identities=15% Similarity=0.283 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hHHHhhhc
Q 001582 951 EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLER 1020 (1049)
Q Consensus 951 ~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe-~l~p~l~~ 1020 (1049)
+..+..++..++.+++-.+ ..+...+|.|+-.|..+++ .++.|..|..|.-.+...+.+ ++.|.+++
T Consensus 29 ~~ek~~~i~ai~~lI~~~g-~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ll~~ 96 (107)
T smart00802 29 YNEKKRALRSIGFLIKLMG-KHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGPLLDQ 96 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3446778888888888554 6667788999999999997 456999999999999999986 68888765
No 215
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=75.43 E-value=53 Score=41.40 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcc
Q 001582 876 SVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK-DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVT 948 (1049)
Q Consensus 876 ~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~-Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s 948 (1049)
..++..|..|-.++++.......-.--++..|+..+. +....++..+..|++.|+..++|..|+-.++..|..
T Consensus 39 ~~~~~~l~~L~~~L~~n~~l~~~igWDL~~~l~~~~~~~~~~~~~~~~~~~l~~la~~gnPkE~~l~~~E~l~~ 112 (633)
T PF08568_consen 39 EEKEEFLPELLEILQDNQELTYEIGWDLPKLLLPFLPSSEISPCVDCCMKCLEELARLGNPKELLLKVCELLEE 112 (633)
T ss_pred hhHHHHHHHHHHHHhhCHHHHHHccccCHHHHHHHhhhhhcchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3455556666666643111121111122333332222 111689999999999999999999988888888863
No 216
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.40 E-value=14 Score=49.66 Aligned_cols=131 Identities=19% Similarity=0.289 Sum_probs=88.8
Q ss_pred cchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHH---HHHHhCCCcHHHHHHHHHHHHH
Q 001582 853 SIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMED-SVEIVIEK---LLHVTKDAVPKVSNEAEHCLTV 928 (1049)
Q Consensus 853 ~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~-~~e~lLp~---Ll~~~~Ds~~~Vr~aA~~~l~~ 928 (1049)
+.|..+...++..+-.+..|....||..+|.++..++.+.++.|.. |-+.++.. |++.++... ..+..
T Consensus 1166 ~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~-~~~~~------- 1237 (1514)
T KOG0929|consen 1166 DVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDE-DESEK------- 1237 (1514)
T ss_pred ccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCccc-chhhh-------
Confidence 4455555567777777777888999999999999999999998874 44444442 233333221 11100
Q ss_pred HHhhcCchhhHHhhhhhhcccchh--HHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001582 929 VLSQYDPFRCLSVIVPLLVTEDEK--TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1006 (1049)
Q Consensus 929 i~~~~~p~~~l~vL~p~l~s~~~~--t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l 1006 (1049)
.+|- |...|+..+-.|+.++ -+.+...|+.++--+..|+...+..+-.....||+.+
T Consensus 1238 --------------------~eW~~tT~~~Al~~~v~lf~~~-~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l 1296 (1514)
T KOG0929|consen 1238 --------------------DEWLSTTCNHALQALVDLFTQF-FKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQL 1296 (1514)
T ss_pred --------------------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHH
Confidence 1121 2234455555555444 3566677888888899999999999999999999999
Q ss_pred HHHhhh
Q 001582 1007 YIMLGK 1012 (1049)
Q Consensus 1007 ~~~lGe 1012 (1049)
....|+
T Consensus 1297 ~~~n~~ 1302 (1514)
T KOG0929|consen 1297 VSSNGE 1302 (1514)
T ss_pred HHhccc
Confidence 888884
No 217
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.27 E-value=22 Score=42.82 Aligned_cols=111 Identities=16% Similarity=0.128 Sum_probs=70.8
Q ss_pred HHHHHHHH-hCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHH
Q 001582 903 VIEKLLHV-TKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFL 981 (1049)
Q Consensus 903 lLp~Ll~~-~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~ii 981 (1049)
++-.||+. +.|.+..|+++|..++-.++.. ++..++..+-++-.+.++-.|.+.--.|+.....-|...+.
T Consensus 552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~-D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~------- 623 (926)
T COG5116 552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCD-DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVAT------- 623 (926)
T ss_pred hHhhhheeecccCchHHHHHHHHheeeeEec-CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHH-------
Confidence 56666665 6799999999999998877633 55566666666556666665544433444333333323322
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhhhcC
Q 001582 982 PALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERL 1021 (1049)
Q Consensus 982 p~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l~~L 1021 (1049)
..|-..+.|+..-||++|.-++.-|.....+++.|.+..+
T Consensus 624 diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I 663 (926)
T COG5116 624 DILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRI 663 (926)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHH
Confidence 2234455699999999998888777666655665555443
No 218
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=75.13 E-value=1.1e+02 Score=36.46 Aligned_cols=182 Identities=14% Similarity=0.184 Sum_probs=107.9
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhhhhhh
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDVM 896 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D-~n~~vr~~AL~~L~~L~~~~~~~~ 896 (1049)
|..|+..+... ++.||.-...-|..+...... .-.--++.+-..+.+.+.+ ..+......|.++..+++.....+
T Consensus 135 i~~Ll~l~~S~---D~rER~~lk~~l~~iy~k~~~-~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~pl 210 (409)
T PF01603_consen 135 IKKLLELFDSP---DPRERDYLKTILHRIYGKFPN-LRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPL 210 (409)
T ss_dssp HHHHHHTTTSS---THHHHHHHHHHHHHHHHH-TT-THHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS-
T ss_pred HHHHHHHcCCC---CHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCC
Confidence 55666655433 266777666666655533211 1111233344445555543 455666677999999998665444
Q ss_pred HHHHHHHH-HHHHHHhCCCc-HHHHHHHHHHHHHHHhhcCchhhHHhhhhhhc---ccchhHHHHHHHHHHHHHhhcCHH
Q 001582 897 EDSVEIVI-EKLLHVTKDAV-PKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV---TEDEKTLVTCINCLTKLVGRLSQE 971 (1049)
Q Consensus 897 ~~~~e~lL-p~Ll~~~~Ds~-~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~---s~~~~t~~~al~~L~~lie~~~~~ 971 (1049)
.+....++ -.|+-+++.+. .........|+..++.. +|.-...++.-+++ ..+...-+.-|+.+..+++..+++
T Consensus 211 k~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k-dp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~ 289 (409)
T PF01603_consen 211 KEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK-DPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPE 289 (409)
T ss_dssp -HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HH
T ss_pred cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh-CchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHH
Confidence 43333333 33344555543 44577788888888865 44433333333332 233333455679999999999999
Q ss_pred HHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001582 972 ELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1004 (1049)
Q Consensus 972 ~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv 1004 (1049)
+.......++.-+.+|+....-.|-..|.+.+-
T Consensus 290 ~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~ 322 (409)
T PF01603_consen 290 EFQKIMVPLFKRLAKCISSPHFQVAERALYFWN 322 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC
Confidence 998899999999999999999999999887653
No 219
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=74.94 E-value=65 Score=36.68 Aligned_cols=105 Identities=18% Similarity=0.279 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhh---HHHHH----HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhh
Q 001582 860 NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM---EDSVE----IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ 932 (1049)
Q Consensus 860 ~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~---~~~~e----~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~ 932 (1049)
..++..|+..+ ..+..++...|.+|.+|+..-+... ..+.+ .....++.....+...|...|-.++..++..
T Consensus 57 ~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 33444555555 5678899999999999998766443 23222 2456666766667788999999999988877
Q ss_pred cCch------hhHHhhhhhhcc----cchhHHHHHHHHHHHHH
Q 001582 933 YDPF------RCLSVIVPLLVT----EDEKTLVTCINCLTKLV 965 (1049)
Q Consensus 933 ~~p~------~~l~vL~p~l~s----~~~~t~~~al~~L~~li 965 (1049)
.+.. ..++.+..++.+ .+......|+.+|..++
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL 178 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL 178 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence 5443 244555555543 22223356777777776
No 220
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=74.85 E-value=1.3e+02 Score=32.55 Aligned_cols=180 Identities=11% Similarity=0.153 Sum_probs=100.0
Q ss_pred HHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHHhhhhhhH---HHHHHHHHHH
Q 001582 839 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD--------ADSSVREVALSLINEMLKNQKDVME---DSVEIVIEKL 907 (1049)
Q Consensus 839 aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D--------~n~~vr~~AL~~L~~L~~~~~~~~~---~~~e~lLp~L 907 (1049)
+++.|..++.......-.-+...++..+...... ....+=...+.+|..|+...+..+. +.+..++..|
T Consensus 8 ~l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~~L 87 (223)
T PF10441_consen 8 ILEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQRL 87 (223)
T ss_pred HHHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHHHH
Confidence 4455555555443333233466666666665532 2244666778899999987666554 3344455556
Q ss_pred HHHhC--------CCcHHHHHH--HHHHHHHHHhhcCchhhHHhhhhhhccc--chhHHHHHHHHHHHHHhhcCHHHHHh
Q 001582 908 LHVTK--------DAVPKVSNE--AEHCLTVVLSQYDPFRCLSVIVPLLVTE--DEKTLVTCINCLTKLVGRLSQEELMA 975 (1049)
Q Consensus 908 l~~~~--------Ds~~~Vr~a--A~~~l~~i~~~~~p~~~l~vL~p~l~s~--~~~t~~~al~~L~~lie~~~~~~l~~ 975 (1049)
|.++. ......... |..+.+.+...|.|. .+.+. .........+.. +..+..
T Consensus 88 L~~l~~~~~~~~~~~~~~s~~~~~a~~~aRlL~~l~ep~--------~~~~~~~~~~~l~~~~~~~--------k~~~~k 151 (223)
T PF10441_consen 88 LRCLFSPNSQRSSKQLGLSAEAEEAKAFARLLTNLCEPS--------SVSRSSKKTSSLTSATSSA--------KKSLRK 151 (223)
T ss_pred HHHHHhcCccccccccccchhhHHHHHHHHHHHHHhCcc--------cccccccccccccHHHHHH--------HHHHHh
Confidence 65554 111223333 777778777777771 11111 001111112222 234445
Q ss_pred hhhhHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHhhh-hHHHhhhcCChhhHHHHHHHHH
Q 001582 976 QLPSFLPALFEAF--GNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLRLVTIYAN 1034 (1049)
Q Consensus 976 ~L~~iip~L~~~~--~D~~seVRKaAv~clv~l~~~lGe-~l~p~l~~L~~s~~kLL~~yi~ 1034 (1049)
+++-++-..++.. ..-.++||++=.-++-+++.++++ ++.-....|+.+-+.+...-++
T Consensus 152 h~~~lL~~Yi~~~~~~~l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~Ld~~gr~~fk~Ly~ 213 (223)
T PF10441_consen 152 HAPYLLANYISLQLKYTLPPEVREALMPGIYALFDVCSQHELQQLNASLDASGRAVFKSLYK 213 (223)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcChHHHHHHHHHHH
Confidence 5554444444443 247899999999999999999997 5443447888888766544433
No 221
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.46 E-value=46 Score=44.89 Aligned_cols=138 Identities=10% Similarity=0.167 Sum_probs=107.1
Q ss_pred CCHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCc
Q 001582 420 ASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRK 499 (1049)
Q Consensus 420 ~~l~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~ 499 (1049)
..+..++. .+.-+|=++|..||..|.+++.+-.. ...+.-+...+.++.+...|.+..|=-..-+.+..++..+++
T Consensus 41 sel~~I~k--kL~KkD~~TK~KaL~eL~eli~~~~~--e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk 116 (1312)
T KOG0803|consen 41 SELDIIVK--KLLKRDETTKIKALQELSELIDTSDT--EELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKK 116 (1312)
T ss_pred HHHHHHHH--HHhccChHHHHHHHHhHHHhcccccc--hHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 34567777 67889999999999999999987543 111112567788899999999999988999999999999999
Q ss_pred chHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhh
Q 001582 500 PFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNK 573 (1049)
Q Consensus 500 ~~~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~ 573 (1049)
.+.+|++.++|..+--.-|.- ...+.+|.+.+.+.|+++..-.+++ +=..+++.++.+.+..
T Consensus 117 ~lsp~LK~li~~wl~~~~d~~---~~vs~aa~~sf~~~f~~ek~~~v~~---------~c~~~i~~~~~~~~~~ 178 (1312)
T KOG0803|consen 117 KLSPFLKSLIPPWLGGQFDLD---YPVSEAAKASFKDGFAEEKDRHVWF---------KCDPEIFYLVTEILVK 178 (1312)
T ss_pred HhhHHHHhhhhhhhheecccc---hHHHHHHHHHHHhhcChhhhHHHHH---------HhhHHHHHHHHHHHhc
Confidence 999999999999887665654 5567788888888888766555443 4556777777766543
No 222
>PF05536 Neurochondrin: Neurochondrin
Probab=73.88 E-value=1.6e+02 Score=36.44 Aligned_cols=156 Identities=13% Similarity=0.111 Sum_probs=103.7
Q ss_pred HhHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcC
Q 001582 857 KYFNQILTAVLEVLDDADS-SVREVALSLINEMLKNQKDVMEDSVE-IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD 934 (1049)
Q Consensus 857 ~~f~~lL~~Ll~~L~D~n~-~vr~~AL~~L~~L~~~~~~~~~~~~e-~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~ 934 (1049)
+.|-..++.|++.+..... .+...|+.+|..++. .+...+.+++ ..++.|.+.+.+ +....+.|..++-.++....
T Consensus 94 ~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 94 PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLG 171 (543)
T ss_pred HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcc
Confidence 4567778889998876555 788899999999993 3333333322 467777777766 35566666666666665544
Q ss_pred ch----------hhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHH--H---HHhhhhhHHHHHHHHhcC-CCHHHHHH
Q 001582 935 PF----------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQE--E---LMAQLPSFLPALFEAFGN-QSADVRKT 998 (1049)
Q Consensus 935 p~----------~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~--~---l~~~L~~iip~L~~~~~D-~~seVRKa 998 (1049)
.. .++..|...+.......+...+++|..++.+.+.. . -...++.+..+|..-+.+ ..++-|..
T Consensus 172 ~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~ 251 (543)
T PF05536_consen 172 QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDP 251 (543)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 21 23333333333333455677788888888766321 1 123567777777777765 67889999
Q ss_pred HHHHHHHHHHHhhhhH
Q 001582 999 VVFCLVDIYIMLGKAF 1014 (1049)
Q Consensus 999 Av~clv~l~~~lGe~l 1014 (1049)
+..+...+..++|.+.
T Consensus 252 al~Laa~Ll~~~G~~w 267 (543)
T PF05536_consen 252 ALNLAASLLDLLGPEW 267 (543)
T ss_pred HHHHHHHHHHHhChHh
Confidence 9999999999999653
No 223
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=73.48 E-value=18 Score=41.79 Aligned_cols=84 Identities=18% Similarity=0.247 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHH-HHHHHHHHHh-c-CCchhhhHHHHHHHHHHHhhcCCc
Q 001582 465 EKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME-RILPHVFSRL-I-DPKELVRQPCSTTLDIVSKTYSVD 541 (1049)
Q Consensus 465 ~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~-~lL~~ll~kl-g-D~k~~vR~~a~~~L~~~~e~~~~d 541 (1049)
++.++.+.+||.-.+..|+..||..|..++..||+.|+.-+- .-.+..|.+| . -.-..|+.+....+.-|.|.|-.|
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 568899999999888889999999999999999998864331 2223333333 2 234457888888888899988888
Q ss_pred chHHHHH
Q 001582 542 SLLPALL 548 (1049)
Q Consensus 542 ~~l~~L~ 548 (1049)
..|..+.
T Consensus 124 p~lsLi~ 130 (462)
T KOG2199|consen 124 PSLSLIS 130 (462)
T ss_pred cchhHHH
Confidence 7666554
No 224
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=73.27 E-value=32 Score=35.37 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHhcCCccch----HHhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 001582 834 TSKHGALQQLIKASVANDHSIW----TKYF-----NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVI 904 (1049)
Q Consensus 834 ~eR~~aL~~L~~li~~~~~~~w----~~~f-----~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lL 904 (1049)
..|.-+|+-|..++..++..+- ...| ..+...|+..+...+..+-..+|+++..|+..++..++..+|.++
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l 116 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFL 116 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777765543221 1123 334445666666566888899999999999999999998899999
Q ss_pred HHHHHHhCCC---cHHHHHHHHHHHHHHHh
Q 001582 905 EKLLHVTKDA---VPKVSNEAEHCLTVVLS 931 (1049)
Q Consensus 905 p~Ll~~~~Ds---~~~Vr~aA~~~l~~i~~ 931 (1049)
..++..+-++ ..+-+..+-+++..++.
T Consensus 117 ~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 117 SHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 9998844221 13455556666666664
No 225
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=72.94 E-value=36 Score=43.12 Aligned_cols=127 Identities=19% Similarity=0.201 Sum_probs=85.2
Q ss_pred CCCHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCC------------------------chhhhhhHHHHHHHHHHh
Q 001582 419 PASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKG------------------------IQEVIQNFEKVMKLFFQH 474 (1049)
Q Consensus 419 ~~~l~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~~------------------------~~~v~~~l~~l~~~l~~~ 474 (1049)
..+|+|.|. ++.|++-.+--+.-..|++.+.+.+.. +++ |+-+.+++.|..+
T Consensus 3 ~~~~~~l~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~il~~~~~--P~~K~~~~~l~~~ 78 (668)
T PF04388_consen 3 QASITELLS--LLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEILVGVQE--PHDKHLFDKLNDY 78 (668)
T ss_pred cccHHHHHH--HhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHHHHhcCC--ccHHHHHHHHHHH
Confidence 457888888 788888777767666777777654321 110 2235667777777
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCcchHHHHH-HHHHHHHHHh-cCCchhhhHHHHHHHHHHHhhcCC------cchHHH
Q 001582 475 LDDPHHKVAQAALSTLADIIPSCRKPFESYME-RILPHVFSRL-IDPKELVRQPCSTTLDIVSKTYSV------DSLLPA 546 (1049)
Q Consensus 475 l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~-~lL~~ll~kl-gD~k~~vR~~a~~~L~~~~e~~~~------d~~l~~ 546 (1049)
|.++++++. +|..|+.|+...+..+.+-+. .|++.||++| -|.-..+=..|..+|-.+.=.++. ..+|.+
T Consensus 79 ~~~~~~Rl~--~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~I 156 (668)
T PF04388_consen 79 FVKPSYRLQ--ALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNI 156 (668)
T ss_pred HcCchhHHH--HHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 777777764 566788999998877777777 7889999999 587776666666666666544442 224555
Q ss_pred HHHhh
Q 001582 547 LLRSL 551 (1049)
Q Consensus 547 L~r~l 551 (1049)
..|.+
T Consensus 157 f~Rl~ 161 (668)
T PF04388_consen 157 FGRLL 161 (668)
T ss_pred HHHHH
Confidence 55555
No 226
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=72.87 E-value=1.1e+02 Score=37.20 Aligned_cols=163 Identities=14% Similarity=0.187 Sum_probs=104.8
Q ss_pred HHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH--hhhh-hhHHHHHHHHHHHHHHhCCC
Q 001582 839 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLK--NQKD-VMEDSVEIVIEKLLHVTKDA 914 (1049)
Q Consensus 839 aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~-n~~vr~~AL~~L~~L~~--~~~~-~~~~~~e~lLp~Ll~~~~Ds 914 (1049)
.|+-+.++++-+....-++....++..++.+...+ +....+.+|.+|..+.. ..+. .+.++ |..|...++-.
T Consensus 154 ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~----i~vLCsi~~~~ 229 (464)
T PF11864_consen 154 LLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPC----IEVLCSIVNSV 229 (464)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHH----HHHHhhHhccc
Confidence 34445666766665555567778888888876553 45566889999999986 3332 23333 33333332222
Q ss_pred cHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhc--c----cchhHHHHHHHHHHHHHhhcCHHHH---HhhhhhHHHHHH
Q 001582 915 VPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV--T----EDEKTLVTCINCLTKLVGRLSQEEL---MAQLPSFLPALF 985 (1049)
Q Consensus 915 ~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~--s----~~~~t~~~al~~L~~lie~~~~~~l---~~~L~~iip~L~ 985 (1049)
.....+-.+++.+++.-....++..|+.+|. + .+.....+|+.++..++-..+.+.+ .-.+..++|++.
T Consensus 230 --~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~ 307 (464)
T PF11864_consen 230 --SLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLL 307 (464)
T ss_pred --ccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHH
Confidence 5666677788888876556678888888883 2 2355677999999988855543333 222345889999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHH
Q 001582 986 EAFGNQSADVRKTVVFCLVDIY 1007 (1049)
Q Consensus 986 ~~~~D~~seVRKaAv~clv~l~ 1007 (1049)
.++.-.++-|=-..+.++-.+.
T Consensus 308 ~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 308 NALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHhCCCCeehHHHHHHHHHHH
Confidence 9998777666555555554444
No 227
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.67 E-value=67 Score=42.22 Aligned_cols=140 Identities=11% Similarity=0.173 Sum_probs=83.8
Q ss_pred HhHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHh
Q 001582 857 KYFNQILTAVLEVLDD----ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT-KDAVPKVSNEAEHCLTVVLS 931 (1049)
Q Consensus 857 ~~f~~lL~~Ll~~L~D----~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~-~Ds~~~Vr~aA~~~l~~i~~ 931 (1049)
.-++.+.+.+.+.+.. .|+.++.+|--+|..++--- . .|.+.-+|.|+..+ +.+.+.||.-+..++--++-
T Consensus 915 ~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS-a---~fces~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 915 SLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS-A---EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh-H---HHHHHHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 3456666667777643 56778888866666665311 1 44444555555544 35556777776666655554
Q ss_pred hcCch--hhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001582 932 QYDPF--RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVD 1005 (1049)
Q Consensus 932 ~~~p~--~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~ 1005 (1049)
.+|.- .--..+-.-+...+...+..|+.+|+.|+-. +.+ .+...++..+.|+.|.+.++|.-|...+-+
T Consensus 991 ~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn---dmi--KVKGql~eMA~cl~D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen 991 RFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN---DMI--KVKGQLSEMALCLEDPNAEISDLAKSFFKE 1061 (1251)
T ss_pred hcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh---hhh--HhcccHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 33321 1111222223345566788999999988732 222 123344667999999999999999955544
No 228
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=72.22 E-value=1.2e+02 Score=38.74 Aligned_cols=150 Identities=13% Similarity=0.154 Sum_probs=87.1
Q ss_pred HhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhhhhhhHHHHH--HHHHHHHHHhCC--CcHHHHHHHHHHHHHHHh
Q 001582 857 KYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDVMEDSVE--IVIEKLLHVTKD--AVPKVSNEAEHCLTVVLS 931 (1049)
Q Consensus 857 ~~f~~lL~~Ll~~L~D~-n~~vr~~AL~~L~~L~~~~~~~~~~~~e--~lLp~Ll~~~~D--s~~~Vr~aA~~~l~~i~~ 931 (1049)
..|...+.-|...+... +......+|.+|..|.-. .-.|..++. .++|.|.+.+.. ..+.+.-.+...+.+++.
T Consensus 486 ~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~-~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~ 564 (708)
T PF05804_consen 486 ELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIP-DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS 564 (708)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC-CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC
Confidence 45666666666666543 445666666666666421 224555543 467777776643 334555555555555553
Q ss_pred hcCc------hhhHHhhhhhhccc--chhHHHHHHHHHHHHHhhc-CHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHH
Q 001582 932 QYDP------FRCLSVIVPLLVTE--DEKTLVTCINCLTKLVGRL-SQEELMAQLPSFLPALFEAFGNQSADVRKTVVFC 1002 (1049)
Q Consensus 932 ~~~p------~~~l~vL~p~l~s~--~~~t~~~al~~L~~lie~~-~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~c 1002 (1049)
.-.. ..++..+..++.++ |....+.++-++..++-+- ..+.+... ..+...++..++|++.+||+.|=.|
T Consensus 565 d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~-~~~~~ylidL~~d~N~~ir~~~d~~ 643 (708)
T PF05804_consen 565 DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKE-TEIPAYLIDLMHDKNAEIRKVCDNA 643 (708)
T ss_pred CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhc-cchHHHHHHHhcCCCHHHHHHHHHH
Confidence 2111 13567777777653 3333344444455555321 12333222 4567889999999999999999999
Q ss_pred HHHHHH
Q 001582 1003 LVDIYI 1008 (1049)
Q Consensus 1003 lv~l~~ 1008 (1049)
|--+..
T Consensus 644 Ldii~e 649 (708)
T PF05804_consen 644 LDIIAE 649 (708)
T ss_pred HHHHHH
Confidence 865543
No 229
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=71.56 E-value=22 Score=41.14 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHHH
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHV 910 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~--~e~lLp~Ll~~ 910 (1049)
|+--.++.+++.. .++ +-+..|..|.++|+..++.|..+||.+|..+..+.+.+|... -..|.-.|...
T Consensus 26 W~~IlDvCD~v~~-----~~~----~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al 96 (462)
T KOG2199|consen 26 WSLILDVCDKVGS-----DPD----GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRAL 96 (462)
T ss_pred HHHHHHHHHhhcC-----CCc----ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHH
Confidence 6666666665332 222 334568889999999999999999999999999999877532 22344444444
Q ss_pred hC-CCcHHHHHHHHHHHHHHHhhcCchh
Q 001582 911 TK-DAVPKVSNEAEHCLTVVLSQYDPFR 937 (1049)
Q Consensus 911 ~~-Ds~~~Vr~aA~~~l~~i~~~~~p~~ 937 (1049)
+. ..+..|++.....++.|+..|.-+.
T Consensus 97 ~~~~~h~kV~~k~~~lv~eWsee~K~Dp 124 (462)
T KOG2199|consen 97 IESKAHPKVCEKMRDLVKEWSEEFKKDP 124 (462)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHhccCc
Confidence 44 4568999999999999999876554
No 230
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=71.46 E-value=48 Score=33.90 Aligned_cols=130 Identities=16% Similarity=0.211 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHH----hhcCchhhHHhhhhhhc
Q 001582 873 ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT-KDAVPKVSNEAEHCLTVVL----SQYDPFRCLSVIVPLLV 947 (1049)
Q Consensus 873 ~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~-~Ds~~~Vr~aA~~~l~~i~----~~~~p~~~l~vL~p~l~ 947 (1049)
....+|..++-++..+++..+..|.+.+..++-.++... -|..-.+...+..++.... ..+.-+.+++.+.+.+.
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 445688889888888887767777777666666666322 2322222333332222111 22333467777888777
Q ss_pred --ccchhHHHHHHHHHHHHHhhcCHHHHHh-hhhhHHHHHHHHhcCCC-HH-HHHHHHHHHHH
Q 001582 948 --TEDEKTLVTCINCLTKLVGRLSQEELMA-QLPSFLPALFEAFGNQS-AD-VRKTVVFCLVD 1005 (1049)
Q Consensus 948 --s~~~~t~~~al~~L~~lie~~~~~~l~~-~L~~iip~L~~~~~D~~-se-VRKaAv~clv~ 1005 (1049)
+++......++++|. ..+..+.+.. .....++-|.+.+.+.+ .. ||-.|.-+|++
T Consensus 97 ~~~~~~~~~~~~lell~---aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLS---AACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp -CTS-HHHHHHHHHHHH---HHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH---HHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 455555556666553 3444444433 33555677888885444 44 67776666654
No 231
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=70.92 E-value=18 Score=45.33 Aligned_cols=134 Identities=17% Similarity=0.227 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhhhhh--------------hHHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001582 861 QILTAVLEVLDD----ADSSVREVALSLINEMLKNQKDV--------------MEDSVEIVIEKLLHVTKDAVPKVSNEA 922 (1049)
Q Consensus 861 ~lL~~Ll~~L~D----~n~~vr~~AL~~L~~L~~~~~~~--------------~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA 922 (1049)
++|..+++.+.. .+..++..|+-.+..|+...-.. .+.|...+...+-++......+.+.
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-- 508 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKI-- 508 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHH--
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHH--
Confidence 345555555543 34568888888888877643221 2233333333333333332233333
Q ss_pred HHHHHHHHhhcCchhhHHhhhhhhccc---chhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcC--CCHHHHH
Q 001582 923 EHCLTVVLSQYDPFRCLSVIVPLLVTE---DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN--QSADVRK 997 (1049)
Q Consensus 923 ~~~l~~i~~~~~p~~~l~vL~p~l~s~---~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D--~~seVRK 997 (1049)
.+|++|-.. .-...++++.|++..+ ..-.++.|+..|.++...++ +.+ .+.+..-+.| .++|||-
T Consensus 509 -~~LkaLgN~-g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-~~v-------~~~l~~I~~n~~e~~EvRi 578 (618)
T PF01347_consen 509 -VYLKALGNL-GHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-EKV-------REILLPIFMNTTEDPEVRI 578 (618)
T ss_dssp -HHHHHHHHH-T-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-HHH-------HHHHHHHHH-TTS-HHHHH
T ss_pred -HHHHHhhcc-CCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-HHH-------HHHHHHHhcCCCCChhHHH
Confidence 344444433 3346888899998765 34567788888776654442 222 2334444433 5789999
Q ss_pred HHHHHHHHH
Q 001582 998 TVVFCLVDI 1006 (1049)
Q Consensus 998 aAv~clv~l 1006 (1049)
||+..|...
T Consensus 579 aA~~~lm~~ 587 (618)
T PF01347_consen 579 AAYLILMRC 587 (618)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 998877543
No 232
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=70.61 E-value=35 Score=38.85 Aligned_cols=183 Identities=12% Similarity=0.141 Sum_probs=96.7
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHH-hcCCccchHHhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhhhhh
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKAS-VANDHSIWTKYFNQILTAVLEVLDDAD-SSVREVALSLINEMLKNQKDV 895 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li-~~~~~~~w~~~f~~lL~~Ll~~L~D~n-~~vr~~AL~~L~~L~~~~~~~ 895 (1049)
++++++.+..+. -++...|..+++.++ ++..+..-.-.-.-+.+-+.+.|.... ....-.|-=+|..+.......
T Consensus 73 lp~lt~~l~SdD---ie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 73 LPQLTQQLFSDD---IEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hHHHHHHHhhhH---HHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 466776664332 667777888888877 344443322111223444556664322 223334444555555422211
Q ss_pred hHHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchh-------hHHhhhhhhcccch--hHHHHHHHHHHHHH
Q 001582 896 MEDS-VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR-------CLSVIVPLLVTEDE--KTLVTCINCLTKLV 965 (1049)
Q Consensus 896 ~~~~-~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~-------~l~vL~p~l~s~~~--~t~~~al~~L~~li 965 (1049)
..-. -...+|.++..+-++.+.|++.+.=++-.|+.-....+ .+.-|+.++.+... ....-+.-.|..|-
T Consensus 150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc 229 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC 229 (526)
T ss_pred eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence 1101 11257888888899999999999888877775432211 22223333333211 11222223333333
Q ss_pred hhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 001582 966 GRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCL 1003 (1049)
Q Consensus 966 e~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~cl 1003 (1049)
.--.+..-...+...+|.|++.+...|+||=--|+.++
T Consensus 230 RGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAi 267 (526)
T COG5064 230 RGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAI 267 (526)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 22222222345677789999999999999865544444
No 233
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=70.46 E-value=67 Score=33.06 Aligned_cols=118 Identities=11% Similarity=0.240 Sum_probs=83.6
Q ss_pred HHHHHHHhccCCCCC---hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhh
Q 001582 818 IPQILHLMCNGNDGS---PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD--ADSSVREVALSLINEMLKNQ 892 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~---~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D--~n~~vr~~AL~~L~~L~~~~ 892 (1049)
+..+++.+++..+.+ .+.-.-+|..+.++. +++...|+.-....+.-+...+.. .+..+...||..|..++.+-
T Consensus 13 l~~L~~~iE~g~~~~~~~~~~La~~L~af~eLM-eHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S 91 (160)
T PF11841_consen 13 LTLLIKMIEEGTEIQPCKGEILAYALTAFVELM-EHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNS 91 (160)
T ss_pred HHHHHHHHHcCCccCcchHHHHHHHHHHHHHHH-hcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCC
Confidence 666777777664311 134445677777755 456778986666666666666643 36789999999999999865
Q ss_pred hhhhH-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCch
Q 001582 893 KDVME-DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF 936 (1049)
Q Consensus 893 ~~~~~-~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~ 936 (1049)
...+. -.-|..++.|+..+.++..++...|.+.+.++....+..
T Consensus 92 ~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 92 PKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 54333 224678888998888898999999999999888766554
No 234
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=69.94 E-value=29 Score=33.84 Aligned_cols=69 Identities=20% Similarity=0.320 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh
Q 001582 861 QILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDV---MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLS 931 (1049)
Q Consensus 861 ~lL~~Ll~~L~D-~n~~vr~~AL~~L~~L~~~~~~~---~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~ 931 (1049)
+++..|.++|.. .++.+..-||.=|.++++..+.. ++.. ..=..+++.+.++..+|+..|..|+..++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~l--g~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKL--GAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHH--SHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhc--ChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 477888888844 46777888999999999877643 2222 134455666778889999999999987764
No 235
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.80 E-value=21 Score=42.84 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHH-H-HHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHhhcCc
Q 001582 861 QILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMED-S-VEIVIEKLLHVTKDA--VPKVSNEAEHCLTVVLSQYDP 935 (1049)
Q Consensus 861 ~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~-~-~e~lLp~Ll~~~~Ds--~~~Vr~aA~~~l~~i~~~~~p 935 (1049)
++.++|.+.|..+++.+...||.+|..++++.|+.|.. . -+.||..++...+.. ..+|++.+...|++|-..+.-
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 56788999999999999999999999999999999873 3 346888877777654 579999999999999987654
No 236
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=69.78 E-value=25 Score=32.18 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=50.3
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001582 861 QILTAVLEVLD-DADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTV 928 (1049)
Q Consensus 861 ~lL~~Ll~~L~-D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~ 928 (1049)
.+|.-+..++. ..+..||+..|.+|..|+...+..+..--..++..+-.+..|..+.+...|-++++.
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 34555555544 356789999999999999988877765555566666667778788888888888764
No 237
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.60 E-value=61 Score=40.71 Aligned_cols=169 Identities=18% Similarity=0.172 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhC
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK 912 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~ 912 (1049)
|.-|.-|++.+..+ ..+.--+.+..-|...+.|.++-+|..+-.++..+...-+..+. ...++..|-+.+.
T Consensus 100 p~iR~lAlrtm~~l-------~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~--~~gl~~~L~~ll~ 170 (734)
T KOG1061|consen 100 PLIRALALRTMGCL-------RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE--DSGLVDALKDLLS 170 (734)
T ss_pred HHHHHHHhhceeeE-------eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc--ccchhHHHHHHhc
Confidence 77888888764321 11223344566788888999999998887777777654433333 2246677777778
Q ss_pred CCcHHHHHHHHHHHHHHHhhcCchhhHHhhhh----hhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHh
Q 001582 913 DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVP----LLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAF 988 (1049)
Q Consensus 913 Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p----~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~ 988 (1049)
|+.+.|+..|..++..|.+.-+-...+.+..+ +|..-+.=+-|+-+.+|..+.+..+.+. ..+-.++.-+...+
T Consensus 171 D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~--~ea~~i~~r~~p~L 248 (734)
T KOG1061|consen 171 DSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS--REAEDICERLTPRL 248 (734)
T ss_pred CCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc--hhHHHHHHHhhhhh
Confidence 99999999999999999876432111111111 1111111122233344444454444433 22345777788888
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhh
Q 001582 989 GNQSADVRKTVVFCLVDIYIMLGK 1012 (1049)
Q Consensus 989 ~D~~seVRKaAv~clv~l~~~lGe 1012 (1049)
.|.++.|=-.+++.+......+.+
T Consensus 249 qh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 249 QHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred ccCCcceEeehHHHHHHHHHHHHH
Confidence 899999999999888776665554
No 238
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=69.50 E-value=32 Score=38.95 Aligned_cols=104 Identities=11% Similarity=0.181 Sum_probs=71.2
Q ss_pred CcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcc----cchhHHHHHHHHHHHHHhhcCHHHHHhh----hhhHHHHHH
Q 001582 914 AVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVT----EDEKTLVTCINCLTKLVGRLSQEELMAQ----LPSFLPALF 985 (1049)
Q Consensus 914 s~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s----~~~~t~~~al~~L~~lie~~~~~~l~~~----L~~iip~L~ 985 (1049)
++.+--.-...|+..+.+.--+..+.+-++|.++. .+.-.+..+++-++.++|.+....+... -..|+|-+.
T Consensus 55 nhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklil 134 (524)
T KOG4413|consen 55 NHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLIL 134 (524)
T ss_pred cccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHH
Confidence 33444444666777777665566666666666653 3445667778888899998886555432 257899999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhh
Q 001582 986 EAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYL 1018 (1049)
Q Consensus 986 ~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l 1018 (1049)
.|+...+-+|-|||...+-.+- .+.+.+.-.|
T Consensus 135 dcIggeddeVAkAAiesikria-lfpaaleaiF 166 (524)
T KOG4413|consen 135 DCIGGEDDEVAKAAIESIKRIA-LFPAALEAIF 166 (524)
T ss_pred HHHcCCcHHHHHHHHHHHHHHH-hcHHHHHHhc
Confidence 9999999999999999987654 3344443333
No 239
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=68.92 E-value=14 Score=43.88 Aligned_cols=96 Identities=20% Similarity=0.255 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHH--HHHHhcCcchHHHHHHHHHHHHHHh
Q 001582 439 RVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLA--DIIPSCRKPFESYMERILPHVFSRL 516 (1049)
Q Consensus 439 R~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~--~l~~~~~~~~~~~l~~lL~~ll~kl 516 (1049)
-.--|..|..+++.... .+...-...|+..+.+.+..+|++|+..||..+. .|+....+.-+.-+..++|.|.+..
T Consensus 272 ev~FL~el~~il~~~~~--~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~ 349 (409)
T PF01603_consen 272 EVLFLNELEEILEVLPP--EEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNS 349 (409)
T ss_dssp HHHHHHHHHHHHTT--H--HHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 34446778888876543 1222345678888888999999999999997765 3344444444566666666666655
Q ss_pred -cCCchhhhHHHHHHHHHHHh
Q 001582 517 -IDPKELVRQPCSTTLDIVSK 536 (1049)
Q Consensus 517 -gD~k~~vR~~a~~~L~~~~e 536 (1049)
.-=...||..+..+|..+++
T Consensus 350 ~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 350 KNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp SS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 34467799999999999986
No 240
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=68.74 E-value=23 Score=33.47 Aligned_cols=43 Identities=9% Similarity=0.148 Sum_probs=40.3
Q ss_pred cchHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhhcCCc
Q 001582 499 KPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVD 541 (1049)
Q Consensus 499 ~~~~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~d 541 (1049)
..+.+|...++..+..-|......||.-+.+.|+.+.+.+|..
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 3578999999999999999999999999999999999999998
No 241
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=67.63 E-value=1.8e+02 Score=36.78 Aligned_cols=164 Identities=13% Similarity=0.206 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHhc-----C---CCHHHHHHHHHHHHHHHH--hhhhhhHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHH
Q 001582 858 YFNQILTAVLEVLD-----D---ADSSVREVALSLINEMLK--NQKDVMEDSVE-IVIEKLLHVTKDAVPKVSNEAEHCL 926 (1049)
Q Consensus 858 ~f~~lL~~Ll~~L~-----D---~n~~vr~~AL~~L~~L~~--~~~~~~~~~~e-~lLp~Ll~~~~Ds~~~Vr~aA~~~l 926 (1049)
.|..+|.-++.+|. + .|.--.+.||+++..+.. .....+.+-.+ -+++.++-.++++.--.+..|-+.+
T Consensus 405 TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~i 484 (970)
T COG5656 405 TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFI 484 (970)
T ss_pred hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHH
Confidence 46666777777772 2 234466788999988876 22233333222 2566777777777666666666666
Q ss_pred HHHHhhcCc-h---hhHHhhhhhhcccchhHHHHHHHHHH-HHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHH
Q 001582 927 TVVLSQYDP-F---RCLSVIVPLLVTEDEKTLVTCINCLT-KLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVF 1001 (1049)
Q Consensus 927 ~~i~~~~~p-~---~~l~vL~p~l~s~~~~t~~~al~~L~-~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~ 1001 (1049)
..+-.-++- . ..+......++...-|..++|--.|. .+...-..+.+.+|+|..|..|...-++=+.++=.-+..
T Consensus 485 s~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe 564 (970)
T COG5656 485 STIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVME 564 (970)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHH
Confidence 666433322 1 12333344444445566555443333 333333356778899999999999999988888765555
Q ss_pred HHHHHHHHhhhhHHHhhhcCChh
Q 001582 1002 CLVDIYIMLGKAFLPYLERLNST 1024 (1049)
Q Consensus 1002 clv~l~~~lGe~l~p~l~~L~~s 1024 (1049)
.+ ...+.|++-||-..|-.+
T Consensus 565 ~f---Ve~fseELspfa~eLa~~ 584 (970)
T COG5656 565 SF---VEYFSEELSPFAPELAGS 584 (970)
T ss_pred HH---HHHhHHhhchhHHHHHHH
Confidence 44 555678888887776554
No 242
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=67.32 E-value=2.6e+02 Score=32.89 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhC
Q 001582 877 VREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK 912 (1049)
Q Consensus 877 vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~ 912 (1049)
++..+|+.+...++.....|++|+..++..+.+.+.
T Consensus 112 vK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~ 147 (370)
T PF08506_consen 112 VKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLT 147 (370)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666678888888887777888888887777777663
No 243
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=66.30 E-value=70 Score=39.16 Aligned_cols=93 Identities=14% Similarity=0.131 Sum_probs=65.8
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCc-hhh---HHhhhhhhccc--chhHHHHHHHHHHHHHh
Q 001582 893 KDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP-FRC---LSVIVPLLVTE--DEKTLVTCINCLTKLVG 966 (1049)
Q Consensus 893 ~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p-~~~---l~vL~p~l~s~--~~~t~~~al~~L~~lie 966 (1049)
..+|+..+..+||.+|.++..++..||+.+.+.+..+-..+.+ ..+ +..|+..++.. ..-++..++-.+..=++
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 5679999999999999999999999999999999988877655 221 11222223222 23456677888888888
Q ss_pred hcCHHHHHhhhhhHHHHHH
Q 001582 967 RLSQEELMAQLPSFLPALF 985 (1049)
Q Consensus 967 ~~~~~~l~~~L~~iip~L~ 985 (1049)
+.+.++-...+|.++.++.
T Consensus 94 Rl~~~e~~~llP~ll~~is 112 (501)
T PF13001_consen 94 RLDDEERRELLPSLLKGIS 112 (501)
T ss_pred cCCHHHHHHHHHHHHHhhc
Confidence 8887776555554444443
No 244
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=66.27 E-value=1.5e+02 Score=36.22 Aligned_cols=179 Identities=16% Similarity=0.183 Sum_probs=95.2
Q ss_pred HHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHHHHhc-----
Q 001582 424 DALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHH-KVAQAALSTLADIIPSC----- 497 (1049)
Q Consensus 424 e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~-kV~~~aL~tL~~l~~~~----- 497 (1049)
+++. .|-++|=..|.|||+.|++ . +-|+.|+.-|+..+++.=. +|.+.-|+.|..+....
T Consensus 211 ~It~--a~~g~~~~~r~eAL~sL~T-----D-------sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 211 EITE--ACTGSDEPLRQEALQSLET-----D-------SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHH--HHhcCCHHHHHHHHHhhcc-----C-------ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 4444 4556899999999998843 2 2344555566665555322 23444444444443222
Q ss_pred --CcchHHHHHHHHHHHHHHh-cCCchh---------hhHHHHHHHHHHHhhcCCc------chHHHHHHhhccC-CCHH
Q 001582 498 --RKPFESYMERILPHVFSRL-IDPKEL---------VRQPCSTTLDIVSKTYSVD------SLLPALLRSLDEQ-RSPK 558 (1049)
Q Consensus 498 --~~~~~~~l~~lL~~ll~kl-gD~k~~---------vR~~a~~~L~~~~e~~~~d------~~l~~L~r~l~~~-~~pk 558 (1049)
.=.+++||..|+|.|+.++ +-..+. +|+-|...|..+...|+.. .++..|.+.+.|. +.+-
T Consensus 277 Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~s 356 (576)
T KOG2549|consen 277 NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLS 356 (576)
T ss_pred CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCch
Confidence 2357899999999999987 333322 6888888888887666532 2333344444343 3333
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhHccccCC---CCHHHHHHHHHHHHHHHHhc
Q 001582 559 AKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHD---KNTKLKEAAITCIISVYTHY 620 (1049)
Q Consensus 559 vk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~D---kn~~VR~aA~~~L~~ly~h~ 620 (1049)
..-.++.-|. .|....+. +.--..+..+...+-.-+.. .|+-.+..|..+-..|+.+.
T Consensus 357 t~YGai~gL~-~lg~~~I~---~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~ 417 (576)
T KOG2549|consen 357 THYGAIAGLS-ELGHEVIR---TVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAE 417 (576)
T ss_pred hhhhHHHHHH-Hhhhhhhh---heeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHh
Confidence 3333333332 12110000 00012333343444333333 45555777777777777664
No 245
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=65.69 E-value=18 Score=44.96 Aligned_cols=142 Identities=16% Similarity=0.246 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHH-HhcCCccchHHhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 001582 833 PTSKHGALQQLIKA-SVANDHSIWTKYFNQILTAVLEV-LDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV 910 (1049)
Q Consensus 833 ~~eR~~aL~~L~~l-i~~~~~~~w~~~f~~lL~~Ll~~-L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~ 910 (1049)
+--|..++..+.-. .-.++ ...++-||.. ..|.|-+||..|...|.-+|-.-+. .+|.+++.
T Consensus 533 pilR~~Gm~t~alAy~GTgn--------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~l 596 (929)
T KOG2062|consen 533 PILRYGGMYTLALAYVGTGN--------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSL 596 (929)
T ss_pred hhhhhhhHHHHHHHHhccCc--------hhhHHHhhcccccccchHHHHHHHHHheeeEecChh--------hchHHHHH
Confidence 66777777654432 21222 1234445554 5889999999999999888744333 24445554
Q ss_pred hCCC-cHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhc
Q 001582 911 TKDA-VPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFG 989 (1049)
Q Consensus 911 ~~Ds-~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~ 989 (1049)
+.++ +.+||-.+.-++-..|.-.....++.+|-|++.....-.|.+|+-.+.-+.-++. +.+-+....|...+.+.++
T Consensus 597 Lses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t-~~~~pkv~~frk~l~kvI~ 675 (929)
T KOG2062|consen 597 LSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQT-EQLCPKVNGFRKQLEKVIN 675 (929)
T ss_pred HhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc-cccCchHHHHHHHHHHHhh
Confidence 4443 5788888888888888778888888888888876555566666655554443332 3332334444444455554
Q ss_pred CC
Q 001582 990 NQ 991 (1049)
Q Consensus 990 D~ 991 (1049)
|.
T Consensus 676 dK 677 (929)
T KOG2062|consen 676 DK 677 (929)
T ss_pred hh
Confidence 43
No 246
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.11 E-value=1.3e+02 Score=36.65 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhh--------hhhhHHHHHHHHHHHHHHhC------------CCcHH
Q 001582 858 YFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ--------KDVMEDSVEIVIEKLLHVTK------------DAVPK 917 (1049)
Q Consensus 858 ~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~--------~~~~~~~~e~lLp~Ll~~~~------------Ds~~~ 917 (1049)
.|..++..|+..-+..+..|.+..+...-.+-+.. ...|.+|...++-.+..-.+ +....
T Consensus 288 ~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~ 367 (559)
T KOG2081|consen 288 EFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFE 367 (559)
T ss_pred cchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHH
Confidence 46666777777777777788888877766544321 12478888888887776553 23467
Q ss_pred HHHHHHHHHHHHHhhcCchhhHHhhhhhhcc--cchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhc--CCCH
Q 001582 918 VSNEAEHCLTVVLSQYDPFRCLSVIVPLLVT--EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFG--NQSA 993 (1049)
Q Consensus 918 Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s--~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~--D~~s 993 (1049)
.|..+-+.++-++-.++-..|++.+.-.+.. ..|....+++..|..+++...+++ .++||.+.+.+- +...
T Consensus 368 fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e-----~~i~pevl~~i~nlp~Q~ 442 (559)
T KOG2081|consen 368 FRLKVGDVLKDVAFIIGSDECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEE-----NTIMPEVLKLICNLPEQA 442 (559)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccc-----cchHHHHHHHHhCCccch
Confidence 7888888888888888999999888777765 358888888999999888776655 334455555543 3445
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 001582 994 DVRKTVVFCLVDIYIMLG 1011 (1049)
Q Consensus 994 eVRKaAv~clv~l~~~lG 1011 (1049)
-+|-+++--+.++...+.
T Consensus 443 ~~~~ts~ll~g~~~ew~~ 460 (559)
T KOG2081|consen 443 PLRYTSILLLGEYSEWVE 460 (559)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 599999998888877765
No 247
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=65.01 E-value=12 Score=28.76 Aligned_cols=29 Identities=14% Similarity=0.339 Sum_probs=25.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001582 979 SFLPALFEAFGNQSADVRKTVVFCLVDIY 1007 (1049)
Q Consensus 979 ~iip~L~~~~~D~~seVRKaAv~clv~l~ 1007 (1049)
..+|.|++.+.+.+.+|++.|+.||..+.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 35789999999999999999999998764
No 248
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=63.98 E-value=86 Score=36.39 Aligned_cols=110 Identities=18% Similarity=0.317 Sum_probs=67.4
Q ss_pred CHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHH-HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCc
Q 001582 421 SLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFE-KVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRK 499 (1049)
Q Consensus 421 ~l~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~-~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~ 499 (1049)
.|++++. +.+=..|.++|+.|+. ..+++.+.|-+= -+.+.++..+.+ |.-+....+.++..|+..-.=
T Consensus 182 ~It~a~~-----~~~~~~r~~aL~sL~t-----D~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 182 EITEALV-----GSNEEKRREALQSLRT-----DPGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred HHHHHHh-----CCCHHHHHHHHHHhcc-----CCCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCC
Confidence 3455554 4677788999887742 223432222221 122333333333 555666666777666665555
Q ss_pred chHHHHHHHHHHHHHHh-c---CCch------hhhHHHHHHHHHHHhhcCCc
Q 001582 500 PFESYMERILPHVFSRL-I---DPKE------LVRQPCSTTLDIVSKTYSVD 541 (1049)
Q Consensus 500 ~~~~~l~~lL~~ll~kl-g---D~k~------~vR~~a~~~L~~~~e~~~~d 541 (1049)
.++.|+..|+|.++.++ + +... .+|+-|...|..+.+.|+..
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~ 302 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS 302 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC
Confidence 78999999999999988 3 2222 57888888888887766653
No 249
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=63.16 E-value=52 Score=32.13 Aligned_cols=94 Identities=16% Similarity=0.313 Sum_probs=65.5
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Q 001582 433 SSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHL---DDPHHKVAQAALSTLADIIPSCRKPFESYMERIL 509 (1049)
Q Consensus 433 s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l---~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL 509 (1049)
+.+|----.-|..|....-+. ..+.++++.+.++| ...+.++...+|.+|-.|+..-.+.|-.|+..-+
T Consensus 14 ~d~~gp~~~~l~eIa~~t~~~--------~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~ 85 (125)
T PF01417_consen 14 NDPWGPPGKLLAEIAQLTYNS--------KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHI 85 (125)
T ss_dssp SSSSS--HHHHHHHHHHTTSC--------HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTH
T ss_pred CCCCCcCHHHHHHHHHHHhcc--------ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 556776666676665555331 37889999999999 7788899999999999999988888888886444
Q ss_pred HHHHHHhc-----C--Cch---hhhHHHHHHHHHHH
Q 001582 510 PHVFSRLI-----D--PKE---LVRQPCSTTLDIVS 535 (1049)
Q Consensus 510 ~~ll~klg-----D--~k~---~vR~~a~~~L~~~~ 535 (1049)
.. +..|. | .++ .||.+|.+.++.+.
T Consensus 86 ~~-I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 86 DI-IRELQDFQYVDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HH-HHGGGG---BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HH-HhhcceeeccCCCCccHHHHHHHHHHHHHHHhC
Confidence 42 22222 2 233 38888888887664
No 250
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=63.01 E-value=34 Score=36.45 Aligned_cols=90 Identities=14% Similarity=0.164 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhccC-CCHHH
Q 001582 481 KVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ-RSPKA 559 (1049)
Q Consensus 481 kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~-~~pkv 559 (1049)
.+....|.+++.++..+|....+++..+|..|-+--.+..-..|..+..++.+..++++++.++..|-=-++.. .....
T Consensus 15 ~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~~~ 94 (198)
T PF08161_consen 15 HAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQPG 94 (198)
T ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCCcc
Confidence 36677889999999999888777777776666655554445689999999999999999999888774223311 22334
Q ss_pred HHHHHHHHHHHhhhh
Q 001582 560 KLAVIEFAISSLNKH 574 (1049)
Q Consensus 560 k~~~L~~l~~~l~~~ 574 (1049)
|. ||.-.|.+|
T Consensus 95 ra----WLLPlLr~~ 105 (198)
T PF08161_consen 95 RA----WLLPLLRDH 105 (198)
T ss_pred cc----hhHHHHHHh
Confidence 44 666556554
No 251
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=62.92 E-value=3.4e+02 Score=33.94 Aligned_cols=135 Identities=11% Similarity=0.157 Sum_probs=88.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchh-------hHH
Q 001582 871 DDADSSVREVALSLINEMLKN---QKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR-------CLS 940 (1049)
Q Consensus 871 ~D~n~~vr~~AL~~L~~L~~~---~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~-------~l~ 940 (1049)
.-+++.++.+||.++....+. +...++ -.-++.+++...-|+.--|...+..++-.++--+++.+ .++
T Consensus 387 ~~kd~~~~aaa~l~~~s~srsV~aL~tg~~--~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId 464 (678)
T KOG1293|consen 387 PIKDHDFVAAALLCLKSFSRSVSALRTGLK--RNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGID 464 (678)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHcCCc--cchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHH
Confidence 346788888998888876543 333333 11234445555578878888889999988887777754 566
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhH-HHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001582 941 VIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSF-LPALFEAFGNQSADVRKTVVFCLVDIY 1007 (1049)
Q Consensus 941 vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~i-ip~L~~~~~D~~seVRKaAv~clv~l~ 1007 (1049)
.|...+.+.+.-++.-++..|..+.=....+.-..-+..| ...+...++|++.+|...+...|-.+.
T Consensus 465 ~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 465 ILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 6666666666777767777777766332222222334444 455777789999999998888776543
No 252
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.47 E-value=19 Score=43.37 Aligned_cols=119 Identities=9% Similarity=0.159 Sum_probs=64.5
Q ss_pred HHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHhhcCchhhHH
Q 001582 863 LTAVLEV-LDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAV-PKVSNEAEHCLTVVLSQYDPFRCLS 940 (1049)
Q Consensus 863 L~~Ll~~-L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~-~~Vr~aA~~~l~~i~~~~~p~~~l~ 940 (1049)
..-|+.. ..|.|-+||.+|...|.-+|-+-+. +++..++.+.+++ ..||....-++-..+....-..|+.
T Consensus 553 v~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~d 624 (926)
T COG5116 553 VSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATD 624 (926)
T ss_pred HhhhheeecccCchHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHH
Confidence 3344554 5788888999998888877632222 3455555555443 4555555555555555555566777
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcC
Q 001582 941 VIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 990 (1049)
Q Consensus 941 vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D 990 (1049)
+|.+++...+.-.|+.|.-.++-++-++. ++|.+....|+..+-+.+.|
T Consensus 625 iL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n-~~Lnp~v~~I~k~f~~vI~~ 673 (926)
T COG5116 625 ILEALMYDTNDFVRQSAMIAVGMILMQCN-PELNPNVKRIIKKFNRVIVD 673 (926)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHHHhhcC-cccChhHHHHHHHHHHHHhh
Confidence 77776655444444544434443333332 33333344444444444433
No 253
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.12 E-value=3.3e+02 Score=35.15 Aligned_cols=114 Identities=12% Similarity=0.144 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCch------hhHHhhhhhh
Q 001582 873 ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF------RCLSVIVPLL 946 (1049)
Q Consensus 873 ~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~------~~l~vL~p~l 946 (1049)
.|++....+..+|..++..++..- .|+...||.|++.++.+ +....+...++++++-|+-+ ..+.++-..+
T Consensus 521 ~n~ql~~Tss~~igs~s~~l~e~P-~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l 597 (982)
T KOG2022|consen 521 PNPQLLSTSSDLIGSLSNWLGEHP-MYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCPESLDPYADQFSAVCYEVL 597 (982)
T ss_pred CChhHHHHHHHHHHHHHHHHhcCC-cccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHh
Confidence 377777778888888886544221 34666789999988865 44555666689999776432 1333333333
Q ss_pred cccch--hHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhc
Q 001582 947 VTEDE--KTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFG 989 (1049)
Q Consensus 947 ~s~~~--~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~ 989 (1049)
...++ -+++...+.++.++.+.-+++....|..++..+...++
T Consensus 598 ~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle 642 (982)
T KOG2022|consen 598 NKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLE 642 (982)
T ss_pred cccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHH
Confidence 33333 24556678889999888877776666666555554443
No 254
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=62.01 E-value=1.3e+02 Score=30.24 Aligned_cols=107 Identities=13% Similarity=0.203 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCC--CCCC
Q 001582 506 ERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSE--GSGN 583 (1049)
Q Consensus 506 ~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~--~~~~ 583 (1049)
..-...+|.+|.-++++++.++.-||.. .=-.|.+++.++.-+.+. |-..|+-++-|+ +.|.+...... ...-
T Consensus 7 r~~F~~~L~~L~aS~qSi~kaa~fAlk~---~~~~edL~~cIle~le~~-~lN~R~nI~~fI-D~l~e~~~~~~~~~~~Y 81 (139)
T PF12243_consen 7 RMQFTQLLRRLNASQQSIQKAAQFALKN---RDMEEDLWSCILEQLEKE-NLNTRINIFYFI-DSLCESSQKSKKYNYPY 81 (139)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHc---cccHHHHHHHHHHHHhcc-chhhHHHHHHHH-HHHHHHHHhcccccchh
Confidence 3456788999988899999999999987 222355677777777654 777899888776 56776433333 1122
Q ss_pred hhhHHHHHHhHccccCC-CCH--HHHHHHHHHHHHHH
Q 001582 584 LGILKLWLAKLTPLVHD-KNT--KLKEAAITCIISVY 617 (1049)
Q Consensus 584 ~~~~~~~l~~l~~~~~D-kn~--~VR~aA~~~L~~ly 617 (1049)
-..+...|++|+.+.-. .+. .=++.+..+|-.+-
T Consensus 82 v~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~ 118 (139)
T PF12243_consen 82 VSMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWS 118 (139)
T ss_pred HHHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHH
Confidence 35678889999987664 333 23444444444443
No 255
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.49 E-value=4.8e+02 Score=34.24 Aligned_cols=160 Identities=13% Similarity=0.146 Sum_probs=104.6
Q ss_pred CCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 001582 850 NDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVV 929 (1049)
Q Consensus 850 ~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i 929 (1049)
+.+++..+--..+++.+..+|...-..+-+.+|.++..+.- +...+.+-.-.+++.++++..+..-+--..+.-++..+
T Consensus 631 ~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~-~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~ 709 (1010)
T KOG1991|consen 631 NHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTF-LSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNY 709 (1010)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh-hhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 33444443334444555555554445566666666655432 23346666777899999999988877788888888877
Q ss_pred HhhcCch---------hhHHhhhhhhcccc--hhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcC--CCHHHH
Q 001582 930 LSQYDPF---------RCLSVIVPLLVTED--EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN--QSADVR 996 (1049)
Q Consensus 930 ~~~~~p~---------~~l~vL~p~l~s~~--~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D--~~seVR 996 (1049)
+...-+. -|+.++.-.+.+.+ ......+.+++..++-.+.- .+.+++|.++..+...+.. .+++.|
T Consensus 710 vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg-~~dq~iplf~~~a~~~l~~~~e~s~~~ 788 (1010)
T KOG1991|consen 710 VTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG-LLDQYIPLFLELALSRLTREVETSELR 788 (1010)
T ss_pred eeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC-cHhhHhHHHHHHHHHHHhccccchHHH
Confidence 7654332 24444455554432 33445678888888877754 7788899998888888876 999999
Q ss_pred HHHHHHHHHHHHHhh
Q 001582 997 KTVVFCLVDIYIMLG 1011 (1049)
Q Consensus 997 KaAv~clv~l~~~lG 1011 (1049)
..++....+....-+
T Consensus 789 ~~~leVvinalyynP 803 (1010)
T KOG1991|consen 789 VMLLEVVINALYYNP 803 (1010)
T ss_pred HHHHHHHHHHHHcCc
Confidence 999887766554433
No 256
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=61.18 E-value=1e+02 Score=36.25 Aligned_cols=69 Identities=12% Similarity=0.221 Sum_probs=47.9
Q ss_pred hhHHhhhhhhcccchhH-HHHHHHHHHHHHhhcCH--HHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001582 937 RCLSVIVPLLVTEDEKT-LVTCINCLTKLVGRLSQ--EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1007 (1049)
Q Consensus 937 ~~l~vL~p~l~s~~~~t-~~~al~~L~~lie~~~~--~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~ 1007 (1049)
.++++|..++++.+.|+ ...|+.=++..|..++. ..+...-. -..+.+.+++.|++||..|..|+-.+.
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~gg--Ke~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGG--KERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhch--HHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 57888888888766554 33455667888877753 23332211 145789999999999999998885554
No 257
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=60.49 E-value=2.9e+02 Score=33.46 Aligned_cols=131 Identities=11% Similarity=0.181 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhh--cCch---hhHHhhhhhhcccc
Q 001582 878 REVALSLINEMLKNQKDVME-DSVEIVIEKLLHVTK-DAVPKVSNEAEHCLTVVLSQ--YDPF---RCLSVIVPLLVTED 950 (1049)
Q Consensus 878 r~~AL~~L~~L~~~~~~~~~-~~~e~lLp~Ll~~~~-Ds~~~Vr~aA~~~l~~i~~~--~~p~---~~l~vL~p~l~s~~ 950 (1049)
...-|.++..+++-....++ ..+..+|..++..+. -+.+...+.+...+++++.. +|.. .|+.+|+-.....+
T Consensus 151 l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~ 230 (464)
T PF11864_consen 151 LSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVS 230 (464)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccc
Confidence 34457777788876666666 668888999888754 44566668888889999875 4443 36666666655443
Q ss_pred hhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001582 951 EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1011 (1049)
Q Consensus 951 ~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lG 1011 (1049)
.. ..+-+.+..|+..+-.......|-.++.. -..-...+..|-.-||+.+..+....|
T Consensus 231 l~--~~~w~~m~nL~~S~~g~~~i~~L~~iL~~-~~~~~~~~~~~lRGAv~~l~~ll~~~~ 288 (464)
T PF11864_consen 231 LC--KPSWRTMRNLLKSHLGHSAIRTLCDILRS-PDPQNKRDINVLRGAVFFLRMLLWGSG 288 (464)
T ss_pred cc--hhHHHHHHHHHcCccHHHHHHHHHHHHcc-cCccccccHHHHhhHHHHHHHHHhccc
Confidence 32 23566777888555334433445444300 000012334444466666655444443
No 258
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=60.37 E-value=2.4e+02 Score=31.52 Aligned_cols=138 Identities=17% Similarity=0.223 Sum_probs=80.6
Q ss_pred HHHHHHHhccCCC-CChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhh
Q 001582 818 IPQILHLMCNGND-GSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 896 (1049)
Q Consensus 818 I~~lL~~l~~~~~-~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~ 896 (1049)
++-+++.+++.+- ...++..+....|..+....+.. ++..++..+...=.....+ .+..+++.....|
T Consensus 113 LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~----~La~il~~ya~~~fr~~~d-------fl~~v~~~l~~~f 181 (262)
T PF14225_consen 113 LPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLP----NLARILSSYAKGRFRDKDD-------FLSQVVSYLREAF 181 (262)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCc----cHHHHHHHHHhcCCCCHHH-------HHHHHHHHHHHHh
Confidence 4667777765430 00135556667777777554443 4555565554433311122 2233333333333
Q ss_pred -HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCch-----hhHHhhhhhhcccchhHHHHHHHHHHHHHhhcC
Q 001582 897 -EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-----RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLS 969 (1049)
Q Consensus 897 -~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~-----~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~ 969 (1049)
-+|.-.++--+++...+....++.....+++.++.+++.. +++..|.-++++.-|. .|++.|..++...|
T Consensus 182 ~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~---eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 182 FPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWM---EALEVLDEIVTRSG 257 (262)
T ss_pred CchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHH---HHHHHHHHHHhhcc
Confidence 3444445556777777888999999999999999887654 3556666666666555 66777776665443
No 259
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=59.75 E-value=1.8e+02 Score=30.05 Aligned_cols=33 Identities=6% Similarity=0.267 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh
Q 001582 981 LPALFEAFGNQSADVRKTVVFCLVDIYIMLGKA 1013 (1049)
Q Consensus 981 ip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~ 1013 (1049)
++.|..++.+.+.++...|+..+.+++...+++
T Consensus 104 ~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 104 LESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 366778888899999999999999998877763
No 260
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=59.27 E-value=2e+02 Score=36.10 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHHHhcCCc-----cchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 001582 833 PTSKHGALQQLIKASVANDH-----SIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKL 907 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~-----~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~L 907 (1049)
..-|...++.+..++.+... +-.++....++..|.++|.|.++-+|..||.++..|+.-. ..+-.--..++..+
T Consensus 313 ~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~-sk~~~~r~ev~~lv 391 (1128)
T COG5098 313 FTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN-SKTVGRRHEVIRLV 391 (1128)
T ss_pred hhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc-ccccchHHHHHHHH
Confidence 55777777777776643321 2234567778888999999999999999999999999632 22221111234445
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHhhcCchh
Q 001582 908 LHVTKDAVPKVSNEAEHCLTVVLSQYDPFR 937 (1049)
Q Consensus 908 l~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~ 937 (1049)
+.++.|....||+.|......++.. ||..
T Consensus 392 ~r~lqDrss~VRrnaikl~SkLL~~-HPF~ 420 (1128)
T COG5098 392 GRRLQDRSSVVRRNAIKLCSKLLMR-HPFA 420 (1128)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhc-CChh
Confidence 5667888889988887766554432 4543
No 261
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=59.27 E-value=2.1e+02 Score=33.53 Aligned_cols=195 Identities=17% Similarity=0.126 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHHHHh-cCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhh--hhhHHHHHH--HHHHH
Q 001582 833 PTSKHGALQQLIKASV-ANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK--DVMEDSVEI--VIEKL 907 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~-~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~--~~~~~~~e~--lLp~L 907 (1049)
..+|.++|+.+.-.+. ..-+.++.++|-.+..+++..+..+...-...+-.++..+|-..+ ..-+..... -+..+
T Consensus 74 AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~~~~~l 153 (427)
T KOG2842|consen 74 AKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLGPFLAL 153 (427)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccchHHHH
Confidence 5699999999877664 445677888999999999999987665433333334444443322 111222222 22333
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHhhcCc-----hhhHHhhhhh-----hcccchhH------HHHHHHHHH---HHHhhc
Q 001582 908 LHVTKDAVPKVSNEAEHCLTVVLSQYDP-----FRCLSVIVPL-----LVTEDEKT------LVTCINCLT---KLVGRL 968 (1049)
Q Consensus 908 l~~~~Ds~~~Vr~aA~~~l~~i~~~~~p-----~~~l~vL~p~-----l~s~~~~t------~~~al~~L~---~lie~~ 968 (1049)
+..-.+.....+..+..|+-..+-..-. ..++..+... +..++..+ ...-+.+++ .++--
T Consensus 154 i~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~Lti- 232 (427)
T KOG2842|consen 154 ILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLTAWSLLLTI- 232 (427)
T ss_pred HhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHHHHHHHHHHc-
Confidence 3333444333344333333322211100 0111111000 00011000 011112211 11111
Q ss_pred CHHHHHhh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh----hHHHhhhcCChhhHHH
Q 001582 969 SQEELMAQ-LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK----AFLPYLERLNSTQLRL 1028 (1049)
Q Consensus 969 ~~~~l~~~-L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe----~l~p~l~~L~~s~~kL 1028 (1049)
.+.....+ +.-++|.+...+.-....+|-++-..+..++.+.-+ ++.|..++|-..-+.|
T Consensus 233 ~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~l 297 (427)
T KOG2842|consen 233 CPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDL 297 (427)
T ss_pred CccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHH
Confidence 11222222 223568888888888888999998888888877642 2444444443333333
No 262
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=59.15 E-value=43 Score=32.71 Aligned_cols=74 Identities=23% Similarity=0.278 Sum_probs=48.8
Q ss_pred HhHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHH---HHHHHHHHhC-C-----CcHHHHHHHHH
Q 001582 857 KYFNQILTAVLEVL---DDADSSVREVALSLINEMLKNQKDVMEDSVEI---VIEKLLHVTK-D-----AVPKVSNEAEH 924 (1049)
Q Consensus 857 ~~f~~lL~~Ll~~L---~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~---lLp~Ll~~~~-D-----s~~~Vr~aA~~ 924 (1049)
..+..|+..|.+.| ..++..+.-.||.+|..|+.+-...|-..+.. .|-.|.+... | ....||..|.+
T Consensus 35 ~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~ 114 (125)
T PF01417_consen 35 KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKE 114 (125)
T ss_dssp HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHH
Confidence 45778999999999 45667788899999999999877776655432 2333322211 2 23458888887
Q ss_pred HHHHHH
Q 001582 925 CLTVVL 930 (1049)
Q Consensus 925 ~l~~i~ 930 (1049)
++..+-
T Consensus 115 i~~lL~ 120 (125)
T PF01417_consen 115 ILELLN 120 (125)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 777653
No 263
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.71 E-value=1.7e+02 Score=33.28 Aligned_cols=170 Identities=18% Similarity=0.189 Sum_probs=89.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Q 001582 430 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERIL 509 (1049)
Q Consensus 430 ~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL 509 (1049)
++.+.+=-.|+.|++.|-.+.-.+ ++-+...-..+++.++++++|+-. ++.+-.+|+.+.+..+ -=+.-+..++
T Consensus 11 ll~~~sP~v~~~AV~~l~~lt~~~---~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~ll~~~~ 84 (353)
T KOG2973|consen 11 LLHSLSPPVRKAAVEHLLGLTGRG---LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKLLQDLL 84 (353)
T ss_pred HhccCChHHHHHHHHHHhhccccc---hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHHHHHHH
Confidence 566777789999999888777652 222223445788888899988877 6666666666665542 1112222234
Q ss_pred HHHHHHhcCC-chhhhHH-------------HHHHHHHHHhhcCCcchHHHHHHhhccC-CCHHHHHHHHHHHHHHhh--
Q 001582 510 PHVFSRLIDP-KELVRQP-------------CSTTLDIVSKTYSVDSLLPALLRSLDEQ-RSPKAKLAVIEFAISSLN-- 572 (1049)
Q Consensus 510 ~~ll~klgD~-k~~vR~~-------------a~~~L~~~~e~~~~d~~l~~L~r~l~~~-~~pkvk~~~L~~l~~~l~-- 572 (1049)
..++.++.|. -+.-+.. +...|...- .+-+..+..+++++.+. .|.++.. +|++-.|+
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~--~~~~~~lm~l~~~~~d~~~n~~a~f---~ylA~vf~nl 159 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLT--EKKDSGLMRLARAFCDKSYNAYAEF---HYLAPVFANL 159 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcc--cccccchHHHHHHHhCcccccccch---hHHHHHHHHH
Confidence 4444444333 2211111 111222111 22345555666666554 5644554 55544343
Q ss_pred -hhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHH
Q 001582 573 -KHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCI 613 (1049)
Q Consensus 573 -~~~~~~~~~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L 613 (1049)
.+.-+.. |.. ..-+..+.++.++++ ..+.||+.+....
T Consensus 160 s~~~~gR~-l~~-~~k~~p~~kll~ft~-~~s~vRr~Gvagt 198 (353)
T KOG2973|consen 160 SQFEAGRK-LLL-EPKRFPDQKLLPFTS-EDSQVRRGGVAGT 198 (353)
T ss_pred hhhhhhhh-Hhc-chhhhhHhhhhcccc-cchhhhccchHHH
Confidence 2211111 111 112455677778888 6677888766544
No 264
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.51 E-value=3.7e+02 Score=33.04 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=91.6
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhhhhh
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDAD--SSVREVALSLINEMLKNQKDV 895 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n--~~vr~~AL~~L~~L~~~~~~~ 895 (1049)
+.++...+...| .+|++-.++|.-|..+++.-.+.. +.++..+++.+.... ..+|..++-+|.++.+-....
T Consensus 389 lk~~~~~l~e~~-~~We~~EAaLF~l~~~~~~~~~~e-----~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~ 462 (559)
T KOG2081|consen 389 LKQMYIRLKENN-ASWEEVEAALFILRAVAKNVSPEE-----NTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQH 462 (559)
T ss_pred HHHHHHHHccCC-CchHHHHHHHHHHHHHhccCCccc-----cchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhC
Confidence 445555554433 359999999999998887655432 346777777776543 237878888888887643211
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCch--hhHHhhhhhhcc------cchhHHHHHHHHHHHHHhh
Q 001582 896 MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--RCLSVIVPLLVT------EDEKTLVTCINCLTKLVGR 967 (1049)
Q Consensus 896 ~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~--~~l~vL~p~l~s------~~~~t~~~al~~L~~lie~ 967 (1049)
-++++.++..++....+.. ...+|..|...++..|--. -+++.+..++.+ .... .++++-+..++.+
T Consensus 463 -p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~e~--a~l~~~~s~i~~~ 537 (559)
T KOG2081|consen 463 -PELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINEEA--ACLLQGISLIISN 537 (559)
T ss_pred -cHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHhc
Confidence 1446667777777776654 6666666667666554221 122222222211 1112 2356667777777
Q ss_pred cCHHHHHhhhhhHHHH
Q 001582 968 LSQEELMAQLPSFLPA 983 (1049)
Q Consensus 968 ~~~~~l~~~L~~iip~ 983 (1049)
.+.+.+..++.++...
T Consensus 538 lp~~k~~~~~~el~~~ 553 (559)
T KOG2081|consen 538 LPAHKAKIALEELCEP 553 (559)
T ss_pred CCHhhhhHHHHHHhhH
Confidence 7777776666555443
No 265
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=58.35 E-value=2.5e+02 Score=37.80 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=53.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhc
Q 001582 862 ILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY 933 (1049)
Q Consensus 862 lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~ 933 (1049)
|+.++++.....+..|....+.+|.+++-+....--++. .+|.-.|-.++|...+||..|...|..+-...
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~-~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R~ 574 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFW-ELLNLVLFKLGDESSEIRSKAMQLLRALEERF 574 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHH-HhHHHHHHhhcCCcHHHHHHHHHHHHHHHHHh
Confidence 677777777777777888888888888864443222333 36677777889999999999999999887553
No 266
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=57.95 E-value=2.8e+02 Score=31.82 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhh----hHHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh
Q 001582 862 ILTAVLEVLDDADSSVREVALSLINEMLKNQKDV----MEDS-VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLS 931 (1049)
Q Consensus 862 lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~----~~~~-~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~ 931 (1049)
++..|-..|...+..|+..+|..+..|+++.... +... -..+++.++++++....+|.++|.+.++.|+.
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial 157 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL 157 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 4566777777778889999999999999876521 1111 23478999999999999999999999998874
No 267
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=57.14 E-value=93 Score=30.10 Aligned_cols=94 Identities=19% Similarity=0.310 Sum_probs=52.8
Q ss_pred HHHHHHhc-CC-CHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHhhcC
Q 001582 864 TAVLEVLD-DA-DSSVREVALSLINEMLKNQKD---VMEDSVEIVIEKLLHVTK----DAVPKVSNEAEHCLTVVLSQYD 934 (1049)
Q Consensus 864 ~~Ll~~L~-D~-n~~vr~~AL~~L~~L~~~~~~---~~~~~~e~lLp~Ll~~~~----Ds~~~Vr~aA~~~l~~i~~~~~ 934 (1049)
.-|++.|. +. |....+.||..+..|++.... .+..+++.++-.|+..-. +...+.|..|..++ + +..
T Consensus 6 rDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval---~-v~~ 81 (114)
T PF10193_consen 6 RDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVAL---V-VAA 81 (114)
T ss_dssp HHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHH---H-HHS
T ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHH---H-HHh
Confidence 34555555 33 566788999999999998777 788999988888887554 33445555444333 3 235
Q ss_pred chhhHHhhhhhhcccch--hHHHHHHHHH
Q 001582 935 PFRCLSVIVPLLVTEDE--KTLVTCINCL 961 (1049)
Q Consensus 935 p~~~l~vL~p~l~s~~~--~t~~~al~~L 961 (1049)
|..+.++|+..+=+.++ ..|+.-|..|
T Consensus 82 P~~~~~~L~~~f~~~~~Sl~qR~~iL~~l 110 (114)
T PF10193_consen 82 PEKVAPYLTEEFFSGDYSLQQRMSILSAL 110 (114)
T ss_dssp GGGHHH-HHHHHTTS---THHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 77888877777755544 3444334433
No 268
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=56.96 E-value=2.4e+02 Score=29.05 Aligned_cols=147 Identities=13% Similarity=0.125 Sum_probs=67.6
Q ss_pred HhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHH-HHHHHHHHhhcCc
Q 001582 857 KYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEA-EHCLTVVLSQYDP 935 (1049)
Q Consensus 857 ~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA-~~~l~~i~~~~~p 935 (1049)
.+|..+...+.....+.+.......+.++-+-+...+... +++..++..+..... ..++... +.|...+-.....
T Consensus 14 ~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~-~~~a~l~~~l~~~~~---~~f~~~ll~~~~~~f~~~~~~ 89 (209)
T PF02854_consen 14 SNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFS-PLYARLCAALNSRFP---SEFRSLLLNRCQEEFEERYSN 89 (209)
T ss_dssp TTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGH-HHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHT-H
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHH-HHHHHHHHHHhccch---hhHHHHHHHHHHHHHHHhhhh
Confidence 3566666666666554455555555555555544444333 333333444433333 2232222 2222222221100
Q ss_pred hhhHHhhhhhhcccchhHHHHHHHHHHHHHhh--cCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh
Q 001582 936 FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGR--LSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKA 1013 (1049)
Q Consensus 936 ~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~--~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~ 1013 (1049)
.. ........++...+.+.+++.|+.. .+...+...+..++........ +.--...+.|+..+...+|..
T Consensus 90 -~~----~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~---~~~~~~~ie~~~~lL~~~G~~ 161 (209)
T PF02854_consen 90 -EE----LEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQ---PPPDEENIECLCTLLKTCGKK 161 (209)
T ss_dssp -HH----HHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCC---HHTCHHHHHHHHHHHHHHHHH
T ss_pred -hh----HHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhccccccc---CCCcHhHHHHHHHHHHHHHHH
Confidence 00 0011112234455667888877743 2444443333333222222111 233346788888888888887
Q ss_pred HH
Q 001582 1014 FL 1015 (1049)
Q Consensus 1014 l~ 1015 (1049)
+.
T Consensus 162 l~ 163 (209)
T PF02854_consen 162 LE 163 (209)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 269
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=56.75 E-value=1.7e+02 Score=33.72 Aligned_cols=89 Identities=11% Similarity=0.107 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCH---HHHHhhhhhHHHHHHHHhcCCC--
Q 001582 918 VSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQ---EELMAQLPSFLPALFEAFGNQS-- 992 (1049)
Q Consensus 918 Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~---~~l~~~L~~iip~L~~~~~D~~-- 992 (1049)
+...+..+++.|+... ++.|...+.+.+......||++|+.++.-.+. .++....+--++.+.+.+..+.
T Consensus 42 ~~~~g~~l~~~iL~~~-----~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~ 116 (330)
T PF11707_consen 42 FQSYGLELIRSILQNH-----LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKE 116 (330)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhcccccc
Confidence 6666777777777653 56666677666666667999999999973332 2222333222233333332111
Q ss_pred -----------HHHHHHHHHHHHHHHHHhh
Q 001582 993 -----------ADVRKTVVFCLVDIYIMLG 1011 (1049)
Q Consensus 993 -----------seVRKaAv~clv~l~~~lG 1011 (1049)
++||.+.+..+..+.....
T Consensus 117 ~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~ 146 (330)
T PF11707_consen 117 KEKDSESSKSKPSIRTNFIRFWLSFLSSGD 146 (330)
T ss_pred ccccccccccCcCHHHHHHHHHHHHHccCC
Confidence 2899999999888877654
No 270
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=55.43 E-value=3.6e+02 Score=31.05 Aligned_cols=124 Identities=15% Similarity=0.274 Sum_probs=59.6
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcc-----cchhHH----HHHHHHHHHHHhhcCHHHH
Q 001582 903 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVT-----EDEKTL----VTCINCLTKLVGRLSQEEL 973 (1049)
Q Consensus 903 lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s-----~~~~t~----~~al~~L~~lie~~~~~~l 973 (1049)
+|-.|++.+.++.+ +|-..--.+-+++..|. ++.+|.|.+.. ++|++- .+-+.++.+.+..... +
T Consensus 108 vLsnLfn~~d~~~~-aR~~Vy~~lv~la~~~~---~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~--~ 181 (378)
T KOG2753|consen 108 VLSNLFNGVDKPTP-ARYQVYMSLVTLAASCK---LIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKS--V 181 (378)
T ss_pred HHHHHHhccCCCch-HHHHHHHHHHHHHhhcc---eeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcch--h
Confidence 33444444444433 66665555555555443 34444444432 233321 2223444444443321 2
Q ss_pred HhhhhhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhh----hhH--HHhhhcCChhh-HHHHHHHH
Q 001582 974 MAQLPSFLPALFEAFGNQ-SADVRKTVVFCLVDIYIMLG----KAF--LPYLERLNSTQ-LRLVTIYA 1033 (1049)
Q Consensus 974 ~~~L~~iip~L~~~~~D~-~seVRKaAv~clv~l~~~lG----e~l--~p~l~~L~~s~-~kLL~~yi 1033 (1049)
... ..+|-.+...|... -++.|..|+.|++.+..-=. |.+ .|-+..|.... ..||.+++
T Consensus 182 ~~s-~kvmt~lLgtyt~dnas~AredA~rcV~~av~dP~~F~fD~Ll~L~pV~qLE~d~i~qLL~IF~ 248 (378)
T KOG2753|consen 182 DES-SKVMTELLGTYTEDNASEAREDAMRCVVEAVKDPKIFLFDHLLTLPPVKQLEGDLIHQLLKIFV 248 (378)
T ss_pred hhH-HHHHHHHHHHhcccchhHHHHHHHHHHHHHHcCCceeccchhccCchHHHhccchHHHHHHHHH
Confidence 222 23444455555444 48999999999987642111 111 23444554444 55666665
No 271
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.02 E-value=81 Score=35.78 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcH
Q 001582 862 ILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVP 916 (1049)
Q Consensus 862 lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~ 916 (1049)
.+..|.+.|.+.++.|+..|+..|-.+.-.....|.+|-+..|+.|++..+|+..
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~ 58 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP 58 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc
Confidence 3567889999999999999987666665555556888888899999999998865
No 272
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=54.28 E-value=1.5e+02 Score=37.14 Aligned_cols=109 Identities=15% Similarity=0.248 Sum_probs=72.7
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCc------chHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhhcC
Q 001582 466 KVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRK------PFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYS 539 (1049)
Q Consensus 466 ~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~------~~~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~ 539 (1049)
+-++.|...|...++-+=..++|+|+.++....+ +..+-+..|+--|.+++.|.-+-+|.+|...+..+-+-
T Consensus 299 rq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl-- 376 (1128)
T COG5098 299 RQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDL-- 376 (1128)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhC--
Confidence 3456677788888888888899999988865532 23345666777777777788888887776666544310
Q ss_pred CcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHH
Q 001582 540 VDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISV 616 (1049)
Q Consensus 540 ~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~l 616 (1049)
..+.|+-|.++.+- ++.+++||+.-||+.|+..+.-+
T Consensus 377 -------------~sk~~~~r~ev~~l---------------------------v~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 377 -------------NSKTVGRRHEVIRL---------------------------VGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred -------------cccccchHHHHHHH---------------------------HHHHhhhhhHHHHHHHHHHHHHH
Confidence 12445555533322 23356899999999999887553
No 273
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=52.84 E-value=2.9e+02 Score=28.72 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=56.5
Q ss_pred HhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 001582 940 SVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLE 1019 (1049)
Q Consensus 940 ~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l~ 1019 (1049)
+++..++.+++.=.+..|+-++...+.. ...+..+++.+...++|.+--|+|+.-.||..++....+.+..|+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~ 181 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLE 181 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 5677777777654555555555554433 2345666677888899999999999999999999998888888886
Q ss_pred cC
Q 001582 1020 RL 1021 (1049)
Q Consensus 1020 ~L 1021 (1049)
..
T Consensus 182 ~~ 183 (197)
T cd06561 182 KN 183 (197)
T ss_pred HH
Confidence 53
No 274
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=52.63 E-value=2.1e+02 Score=37.11 Aligned_cols=180 Identities=16% Similarity=0.137 Sum_probs=105.5
Q ss_pred CHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHH-------------
Q 001582 421 SLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAAL------------- 487 (1049)
Q Consensus 421 ~l~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL------------- 487 (1049)
-+.+++-. .|-|+.--.|..||..+..+++-...+ .-+.+++++..--+|+-+-+....-
T Consensus 472 ~~~~~~~~-rClDkaaavR~~al~s~tk~l~l~~~~------~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~ 544 (1529)
T KOG0413|consen 472 VLYNIVYM-RCLDKAAAVRLHALNSLTKILQLQSHR------EAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKT 544 (1529)
T ss_pred HHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhccc------chHHHHHHhcCCccccchhHHHhchhhhhcccCccccc
Confidence 34555554 677888888888888888888743321 1233444444444444444332222
Q ss_pred -------HHHHHHHHhcCc----chH-HHHHHHHHHHHHHhc-CCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhccC
Q 001582 488 -------STLADIIPSCRK----PFE-SYMERILPHVFSRLI-DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ 554 (1049)
Q Consensus 488 -------~tL~~l~~~~~~----~~~-~~l~~lL~~ll~klg-D~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~ 554 (1049)
.-.+.++....- ..+ .+=+-++-.++.++. |.|..|+.++...|..+-..+...-.++..+-+|.+.
T Consensus 545 ~~tt~~l~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~l 624 (1529)
T KOG0413|consen 545 KKTTDLLLDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQML 624 (1529)
T ss_pred ccchhhcCcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHH
Confidence 222223322210 111 112344556667774 8899999999888888888888777777754444433
Q ss_pred -CC--HHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHH
Q 001582 555 -RS--PKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCI 613 (1049)
Q Consensus 555 -~~--pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L 613 (1049)
.. --+|..++.-|++.+-. ++--| +-.+.|+..+++.+.|...+|-+.|..+|
T Consensus 625 Crd~~vsvrk~~~~Sltel~~~---~pr~~---~~~~~wl~~li~~~~d~es~v~e~a~~~i 680 (1529)
T KOG0413|consen 625 CRDRMVSVRKTGADSLTELMLR---DPRLF---SLSSKWLHTLISMLNDTESDVTEHARKLI 680 (1529)
T ss_pred hcCcchHHHHHHHHHHHHHHhh---Cchhh---hhhHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 21 23555566666654321 22211 34568888888888898888888887754
No 275
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=52.24 E-value=55 Score=33.58 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001582 863 LTAVLEVLDDAD-SSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCL 926 (1049)
Q Consensus 863 L~~Ll~~L~D~n-~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l 926 (1049)
+..|+..|.|+. ..-...++.++-.|++.++.+.-+|+..++|.+++.+.......++..-.-+
T Consensus 88 i~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL 152 (160)
T PF11865_consen 88 INALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQL 152 (160)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHH
Confidence 445667777754 2344567888888998888888999999999999998866554444433333
No 276
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.98 E-value=6.8e+02 Score=35.35 Aligned_cols=200 Identities=19% Similarity=0.278 Sum_probs=116.1
Q ss_pred HHHHHHHHHh---cC----CccchHHhHHHHHHHHHHHhcCCCHHH-HHHH--HHHHHHHHHhhhhhhH---HHHHHHHH
Q 001582 839 ALQQLIKASV---AN----DHSIWTKYFNQILTAVLEVLDDADSSV-REVA--LSLINEMLKNQKDVME---DSVEIVIE 905 (1049)
Q Consensus 839 aL~~L~~li~---~~----~~~~w~~~f~~lL~~Ll~~L~D~n~~v-r~~A--L~~L~~L~~~~~~~~~---~~~e~lLp 905 (1049)
||..+..++. +. ....|..-|..++..+++.++|+.+.- -+-+ +.++.........-.. .....++.
T Consensus 1804 aLa~lkslvs~~~~k~d~~~~~~w~~l~~sal~vi~e~~~~~~~~~~nevs~l~~i~vf~~sa~~~v~~~~ql~~~~c~~ 1883 (2067)
T KOG1822|consen 1804 ALAALKSLVSAMMEKLDAPVTVLWETLLRSALAVILEALDDSEPTSKNEVSTLLAITVFTLSAPEDVVDDPQLQFQSCIN 1883 (2067)
T ss_pred HHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHHHhhcCcccccccHHHHHHHHHH
Confidence 6666665542 21 345699999999999999998754321 1111 1111222222111111 11224566
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHhhcCch--------hhHHhhhhhhc---cc------chhHHHHHHHHHHHHHhhc
Q 001582 906 KLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLV---TE------DEKTLVTCINCLTKLVGRL 968 (1049)
Q Consensus 906 ~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~--------~~l~vL~p~l~---s~------~~~t~~~al~~L~~lie~~ 968 (1049)
.+-.....++..|+-.....+..|..+.... .|-.++...++ ++ +..+...|++.+..++..-
T Consensus 1884 ~l~~~L~s~n~~v~~k~~q~l~sif~~~~~~~~~p~i~~~la~vi~~~l~~~d~~~~~s~sel~i~~e~i~~~e~lV~~~ 1963 (2067)
T KOG1822|consen 1884 SLKLALNSSNPSVQAKTLQLLPSIFSNSNDANAYPYIDYSLAPVIKESLTAEDSNKPKSESELEIVEECIKVLETLVDKS 1963 (2067)
T ss_pred HHHHHhccCChHHHHHHHHhHHHHHhccccccccccHHHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhhcc
Confidence 6777778888999999999999888776551 12233333332 21 1234567777777666332
Q ss_pred CHHHHHhhhhhHHHHHHHHhcCC---------CHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHhhhc
Q 001582 969 SQEELMAQLPSFLPALFEAFGNQ---------SADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQA 1039 (1049)
Q Consensus 969 ~~~~l~~~L~~iip~L~~~~~D~---------~seVRKaAv~clv~l~~~lGe~l~p~l~~L~~s~~kLL~~yi~R~~~~ 1039 (1049)
....=.+.++-++|.++.-+.|. .-..++-+..=|+++....+.+|...++..++-|+|+... |+.....
T Consensus 1964 ee~~~~q~~sllIp~llsfl~d~~s~~~~~~~~~~lh~~a~~~L~~i~~~~p~~fKs~i~~sp~l~~kle~a-Iq~~~~~ 2042 (2067)
T KOG1822|consen 1964 EEQKRIQVLSLLIPLLLSFLLDETSLGSHPSYEKKLHEFALQNLLAIGPLYPIEFKSVIGSSPELQQKLEAA-IQSSQES 2042 (2067)
T ss_pred chhhhhHHHHHHHHHHHHHhccccccccCchHHHhHHHHHHHHHHHhcCCCcHHHHHHHhcCchhhHHHHHH-HHhhhhh
Confidence 11011134566778888777332 2345555666666666555668888999999999998887 7665443
No 277
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=51.92 E-value=4.3e+02 Score=30.44 Aligned_cols=152 Identities=17% Similarity=0.179 Sum_probs=92.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHH-hhhhh---hHHH---HHHHHHHHHHHhC---CCc-------HHHHHHHHHH
Q 001582 863 LTAVLEVLDDADSSVREVALSLINEMLK-NQKDV---MEDS---VEIVIEKLLHVTK---DAV-------PKVSNEAEHC 925 (1049)
Q Consensus 863 L~~Ll~~L~D~n~~vr~~AL~~L~~L~~-~~~~~---~~~~---~e~lLp~Ll~~~~---Ds~-------~~Vr~aA~~~ 925 (1049)
+..+-..|...+..+...+|++|.+|+. +-+.. +-.+ --..+++++.--+ +.. +.||.....-
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 5566677787777777799999999998 44332 2222 2346777774332 111 2899999998
Q ss_pred HHHHHhhcCchh---------hHHhhhhhhcccchhHHHHHHHHHHH-HHhhc--CHHHHHhhh-hhHHHHHHHHhcCCC
Q 001582 926 LTVVLSQYDPFR---------CLSVIVPLLVTEDEKTLVTCINCLTK-LVGRL--SQEELMAQL-PSFLPALFEAFGNQS 992 (1049)
Q Consensus 926 l~~i~~~~~p~~---------~l~vL~p~l~s~~~~t~~~al~~L~~-lie~~--~~~~l~~~L-~~iip~L~~~~~D~~ 992 (1049)
+-.++...++.- .+..+..+|..+.+.+...-|+.|.. +++.- ++..=...+ ...+..|...++..+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 888888887753 23444444444445555555555553 33211 111000111 234566777777766
Q ss_pred H----HHHHHHHHHHHHHHHHhhhhH
Q 001582 993 A----DVRKTVVFCLVDIYIMLGKAF 1014 (1049)
Q Consensus 993 s----eVRKaAv~clv~l~~~lGe~l 1014 (1049)
. .|++.|...|..+|.--+.-+
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~Gv 243 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHGV 243 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCccc
Confidence 6 999999999999986554433
No 278
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=50.88 E-value=1.6e+02 Score=27.77 Aligned_cols=90 Identities=18% Similarity=0.170 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHhcCCc--cchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhh-h-hHHH-HHHHHHHHH
Q 001582 834 TSKHGALQQLIKASVANDH--SIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD-V-MEDS-VEIVIEKLL 908 (1049)
Q Consensus 834 ~eR~~aL~~L~~li~~~~~--~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~-~-~~~~-~e~lLp~Ll 908 (1049)
|-|..||+.|..=+..+-. .... +=..++..|++|+..+.....+.+|.+|..+++.-.. . +... +..++-++
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~-~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~kl- 79 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLV-KERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKL- 79 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHc-cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHH-
Confidence 4688899887765544311 1111 3467888999999988877888999999998875422 1 2221 23333333
Q ss_pred HHhCCCcHHHHHHHHHHHH
Q 001582 909 HVTKDAVPKVSNEAEHCLT 927 (1049)
Q Consensus 909 ~~~~Ds~~~Vr~aA~~~l~ 927 (1049)
..+..+..+..+++.++
T Consensus 80 --r~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 80 --RPNVEPNLQAEIDEILD 96 (98)
T ss_pred --HhcCCHHHHHHHHHHHh
Confidence 23444555555555554
No 279
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=50.75 E-value=1.5e+02 Score=28.13 Aligned_cols=91 Identities=15% Similarity=0.210 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHhCCCc
Q 001582 837 HGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEI-VIEKLLHVTKDAV 915 (1049)
Q Consensus 837 ~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~-lLp~Ll~~~~Ds~ 915 (1049)
...++.|..++.++. .+-..+...+.+.+....+.-+..+|.++..|+++.+..-..+... +.+.+.+.+....
T Consensus 18 ~~~I~~lt~~a~~~~-----~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~ 92 (114)
T cd03562 18 QPSIQTLTKLAIENR-----KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVD 92 (114)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCC
Confidence 345555555554442 3445566677777776666777788999999999876554433332 3444445666666
Q ss_pred HHHHHHHHHHHHHHHhh
Q 001582 916 PKVSNEAEHCLTVVLSQ 932 (1049)
Q Consensus 916 ~~Vr~aA~~~l~~i~~~ 932 (1049)
+.++......++.|-+.
T Consensus 93 ~~~r~kl~rl~~iW~~~ 109 (114)
T cd03562 93 EKTRKKLERLLNIWEER 109 (114)
T ss_pred HHHHHHHHHHHHHccCC
Confidence 78888888888877643
No 280
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=50.56 E-value=52 Score=31.10 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=50.0
Q ss_pred HHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHhhhc
Q 001582 970 QEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQA 1039 (1049)
Q Consensus 970 ~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l~~L~~s~~kLL~~yi~R~~~~ 1039 (1049)
++.+..+.+.++..+..+|.|-.++||.-|+..|--+..+.|+++. ...-.|+|+-|+.=.+..
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~------~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELC------SGGWVKILPNFLDLLGWS 65 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhH------hhhHHHHHHHHHHHHCCC
Confidence 5677889999999999999999999999999999888888887722 122345777777655444
No 281
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=50.13 E-value=56 Score=34.53 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=76.7
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 001582 433 SSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDD-PHHKVAQAALSTLADIIPSCRKPFESYMERILPH 511 (1049)
Q Consensus 433 s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~D-sn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~~ 511 (1049)
.+-=+.|.+|-..|+.++......+..| +....|.++|...-.+ -|..-....+..+..+ + .+..|.+.++.+
T Consensus 18 EKiDrvR~~A~~~l~~ll~~~~~~~~~i-p~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~L---L--~~~~y~~~ll~G 91 (193)
T PF12612_consen 18 EKIDRVREVAGKCLQRLLHSQDPTIPHI-PHREELQDIFPSESEASLNWSSSSEYFPRLVKL---L--DLPEYRYSLLSG 91 (193)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccCC-CcHHHHHHHcccccccccccCCHHHHHHHHHHH---h--ccHHHHHHHHhH
Confidence 3334689999999999995442211122 4556666666432211 1222233333333333 2 345899999999
Q ss_pred HHHHhcCCchhhhHHHHHHHHHHHhh-----cCCcchHHHHHHhhccC-CCHHHHHHHHHHHHH
Q 001582 512 VFSRLIDPKELVRQPCSTTLDIVSKT-----YSVDSLLPALLRSLDEQ-RSPKAKLAVIEFAIS 569 (1049)
Q Consensus 512 ll~klgD~k~~vR~~a~~~L~~~~e~-----~~~d~~l~~L~r~l~~~-~~pkvk~~~L~~l~~ 569 (1049)
++--.|..-+++...+..+|..+... ...+.++..|...+.+. ++.++=+-+|+.+..
T Consensus 92 lv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~ 155 (193)
T PF12612_consen 92 LVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDF 155 (193)
T ss_pred HHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHH
Confidence 99999999999888888887777642 22344555555555443 344444445555543
No 282
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=50.10 E-value=1.8e+02 Score=37.03 Aligned_cols=132 Identities=14% Similarity=0.152 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhh-----
Q 001582 858 YFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ----- 932 (1049)
Q Consensus 858 ~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~----- 932 (1049)
.|..-..-+...+...+.-++ .++.+|-.|+++......-.-..+++.|+.++.....++.-.+..+++.+.-.
T Consensus 247 ~~~~~~kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~ 325 (708)
T PF05804_consen 247 DYEKELKKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKD 325 (708)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 444444444444454444344 66888888888776554444455777788877777778888777777766522
Q ss_pred -cCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhh-hhHHHHHHHHhcCCC
Q 001582 933 -YDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL-PSFLPALFEAFGNQS 992 (1049)
Q Consensus 933 -~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L-~~iip~L~~~~~D~~ 992 (1049)
.--..+++.|..++.+++......++++|..|... ++.-...+ -.++|.|+..+.|.+
T Consensus 326 ~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd--~~~R~~mV~~GlIPkLv~LL~d~~ 385 (708)
T PF05804_consen 326 EMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD--PELRSQMVSLGLIPKLVELLKDPN 385 (708)
T ss_pred HHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC--HHHHHHHHHCCCcHHHHHHhCCCc
Confidence 12224777788888888777777888887776521 22211111 235677777777653
No 283
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.89 E-value=6.8e+02 Score=32.22 Aligned_cols=125 Identities=12% Similarity=0.243 Sum_probs=77.5
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHHHhcCCcc--chHHhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhhhhhh
Q 001582 820 QILHLMCNGNDGSPTSKHGALQQLIKASVANDHS--IWTKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDVM 896 (1049)
Q Consensus 820 ~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~--~w~~~f~~lL~~Ll~~L~D-~n~~vr~~AL~~L~~L~~~~~~~~ 896 (1049)
.+++.+.+.++ -..|.++.+.+.-++..-++. .....+..+...|+..|.. ...+.+...|.+|..|+...+..+
T Consensus 530 a~lnLL~d~~D--~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I 607 (978)
T KOG1993|consen 530 AFLNLLQDQND--LVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHI 607 (978)
T ss_pred HHHHhcCcccc--ceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 44555555443 457777877777666543322 2222333333444444432 234457778999999999888888
Q ss_pred HHHHHH---HHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCc--hhhHHhhhhhhc
Q 001582 897 EDSVEI---VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP--FRCLSVIVPLLV 947 (1049)
Q Consensus 897 ~~~~e~---lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p--~~~l~vL~p~l~ 947 (1049)
.+|+.. ++|.|-+-.. ..+-.+.+...++..++..+.. .-+.+++.|+|+
T Consensus 608 ~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIe 662 (978)
T KOG1993|consen 608 APYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIE 662 (978)
T ss_pred hHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence 888554 4555554333 3456788888899988877543 457788888885
No 284
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.87 E-value=1.1e+02 Score=41.41 Aligned_cols=107 Identities=17% Similarity=0.211 Sum_probs=79.6
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 001582 432 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPH 511 (1049)
Q Consensus 432 ~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~~ 511 (1049)
.+..|.+|...|..|+..+-......++ .+-+++-+.+...+.|....|-.++-++|..|+..-.-.+.+ ...-+.
T Consensus 1537 ~~~tw~vr~avl~fl~~~vy~n~Fv~~~--~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~--~k~d~~ 1612 (1710)
T KOG1851|consen 1537 DSSTWRVRSAVLKFLQTVVYSNIFVSQE--LRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFVS--DKRDTT 1612 (1710)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhcccc--hhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccch--Hhhhhh
Confidence 5888999999999999888765543333 356788889999999998889999999999998766433333 333444
Q ss_pred HHHHhcCCchhhhH-HHHHHHHHHHhhcCCcc
Q 001582 512 VFSRLIDPKELVRQ-PCSTTLDIVSKTYSVDS 542 (1049)
Q Consensus 512 ll~klgD~k~~vR~-~a~~~L~~~~e~~~~d~ 542 (1049)
-....+-.++-++. .|-..|.+++-+||.+.
T Consensus 1613 ~~~~~s~s~~~i~~HgavlgLgA~VlafPy~v 1644 (1710)
T KOG1851|consen 1613 SNILQSKSKDEIKAHGAVLGLGAIVLAFPYVV 1644 (1710)
T ss_pred hhhhhhcchHHHHhhhhHHHHHHHHHhccccc
Confidence 44455556666666 55888999999988764
No 285
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=48.31 E-value=4e+02 Score=29.05 Aligned_cols=108 Identities=15% Similarity=0.095 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHhh--cCchhhHHhhhhhhcccchhHHHHHH
Q 001582 882 LSLINEMLKNQKDVMEDSVEIVIEKLLHVT-KDAVPKVSNEAEHCLTVVLSQ--YDPFRCLSVIVPLLVTEDEKTLVTCI 958 (1049)
Q Consensus 882 L~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~-~Ds~~~Vr~aA~~~l~~i~~~--~~p~~~l~vL~p~l~s~~~~t~~~al 958 (1049)
-..++.+|+..++ +...+++.|...+ ++..+.++..+.+++..++.. ++....+.+|.+.+.....+.....+
T Consensus 105 a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~~~~rp~v~~~l 180 (234)
T PF12530_consen 105 AASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLSLDYRPLVLKSL 180 (234)
T ss_pred HHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCCccchHHHHHH
Confidence 4578888877666 4555677777777 788888999999999999944 66677888888877433334333222
Q ss_pred HHHHHHHhhcC--HHHHHhhhhhHHHHHHHHhcCCCH
Q 001582 959 NCLTKLVGRLS--QEELMAQLPSFLPALFEAFGNQSA 993 (1049)
Q Consensus 959 ~~L~~lie~~~--~~~l~~~L~~iip~L~~~~~D~~s 993 (1049)
--+-.++-+.. .++....-..++..+-+...+.+.
T Consensus 181 ~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 181 CSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 22222332222 233333334444555555555553
No 286
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=47.91 E-value=4e+02 Score=29.01 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=27.3
Q ss_pred hhhhHHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Q 001582 976 QLPSFLPALFEAF-GNQSADVRKTVVFCLVDIY 1007 (1049)
Q Consensus 976 ~L~~iip~L~~~~-~D~~seVRKaAv~clv~l~ 1007 (1049)
+-.++++.|..++ ++.+..++..++.+|..+|
T Consensus 118 ~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 118 HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 5567778888888 7899999999999998888
No 287
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=47.42 E-value=1.8e+02 Score=34.51 Aligned_cols=99 Identities=16% Similarity=0.190 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHHHHhcCCccc-hHHhHHHHHHH---HHHHhcCCCHHHHHHHHHHHHHHHHhhh--hhhH-----HHHH
Q 001582 833 PTSKHGALQQLIKASVANDHSI-WTKYFNQILTA---VLEVLDDADSSVREVALSLINEMLKNQK--DVME-----DSVE 901 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~-w~~~f~~lL~~---Ll~~L~D~n~~vr~~AL~~L~~L~~~~~--~~~~-----~~~e 901 (1049)
|..+.++|..+...+.+..... -.++|..+-.. +-+.++|-...+-...+..|.-|+..+- +.|. .+++
T Consensus 407 ppdqedallaaikkfgeePiakikedhfenlkagieeiReaIddisaekfqasfelikciiahlikehkfskledahcle 486 (666)
T KOG4825|consen 407 PPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKEHKFSKLEDAHCLE 486 (666)
T ss_pred CccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHH
Confidence 8888899988877765543222 23455544333 4445555555566667888887776542 3343 3466
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHh
Q 001582 902 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLS 931 (1049)
Q Consensus 902 ~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~ 931 (1049)
-.+|.++--.+|..+-++..|-+.+..++.
T Consensus 487 hhfctlllpngdleariqrtAaefieelAl 516 (666)
T KOG4825|consen 487 HHFCTLLLPNGDLEARIQRTAAEFIEELAL 516 (666)
T ss_pred HhhhhhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 778888888889988888888887776663
No 288
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.93 E-value=4.6e+02 Score=36.87 Aligned_cols=171 Identities=18% Similarity=0.245 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADS-SVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT 911 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~-~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~ 911 (1049)
+-.|..-...|.-+-+..+...-.+++..-+..++....|++. .|++-+|..+..++..-+..+-.|++..+--++...
T Consensus 930 ~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lL 1009 (2067)
T KOG1822|consen 930 PITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLL 1009 (2067)
T ss_pred cHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHc
Confidence 4455555555555556655555567777767778888888776 899999999999998777667777776665555444
Q ss_pred ---CCCcHHHHHHHHHHHH------HHHhhcCchh---------------hHHhhhhhhcc-cchhHHHHHHHHHHHHHh
Q 001582 912 ---KDAVPKVSNEAEHCLT------VVLSQYDPFR---------------CLSVIVPLLVT-EDEKTLVTCINCLTKLVG 966 (1049)
Q Consensus 912 ---~Ds~~~Vr~aA~~~l~------~i~~~~~p~~---------------~l~vL~p~l~s-~~~~t~~~al~~L~~lie 966 (1049)
.+.+.+|...-..|+. .+.....|+- |+-. +-++.+ .+.-...++++|+..+--
T Consensus 1010 ls~p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~-~allls~~d~lnqa~ai~clqqlhl 1088 (2067)
T KOG1822|consen 1010 LSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAA-CALLLSHSDPLNQAAAIKCLQQLHL 1088 (2067)
T ss_pred CCCCcchhhhhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHH-HHHhcCCCccchHHHHHHHHHHHHh
Confidence 4556677776666666 5555544431 1111 111111 122233456666655432
Q ss_pred hcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001582 967 RLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1007 (1049)
Q Consensus 967 ~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~ 1007 (1049)
..+. .-++..+++.+...+...---.|++++.||-.+-
T Consensus 1089 Fapr---~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1089 FAPR---HVNLDSLVLQLCSLLSSSYLILRRASFSCLRQLV 1126 (2067)
T ss_pred hcch---hccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHh
Confidence 2222 2255667777766555555556666666665543
No 289
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=46.60 E-value=1.8e+02 Score=29.92 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHhhc-CHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001582 952 KTLVTCINCLTKLVGRL-SQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1007 (1049)
Q Consensus 952 ~t~~~al~~L~~lie~~-~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~ 1007 (1049)
.....|+.|+..+++.. |.+.+.. -+.++..|+.+++.++..+|+.|...|..+|
T Consensus 131 ~~~~~~l~Clkal~n~~~G~~~v~~-~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 131 DIEHECLRCLKALMNTKYGLEAVLS-HPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHC-SSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHc-CcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 34456777776666432 3333322 3677899999999999999999999999887
No 290
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=45.62 E-value=3.6e+02 Score=27.75 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCch--hhHHhhhhhhcc-cchhHHHH
Q 001582 880 VALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--RCLSVIVPLLVT-EDEKTLVT 956 (1049)
Q Consensus 880 ~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~--~~l~vL~p~l~s-~~~~t~~~ 956 (1049)
.+..+|.++++....--.+-++.++..++.....+.. .-..|+..|+..++.. .+..-|..++.. ...+. -.
T Consensus 37 LG~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~----~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~-~~ 111 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSS----QYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPG-DV 111 (158)
T ss_dssp HHHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--H----HHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-H-HH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchh----HHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCH-HH
Confidence 6778888888754433334456666666655555322 2347777777665432 122222222221 00111 11
Q ss_pred HHHHHHHHHh--hcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001582 957 CINCLTKLVG--RLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1004 (1049)
Q Consensus 957 al~~L~~lie--~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv 1004 (1049)
+..++..+.- +.. ..+ -+.++-.|-|++-.++.++|+.||..+.
T Consensus 112 a~~ll~Al~PLi~~s-~~l---rd~lilvLRKamf~r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 112 AIGLLRALLPLIKFS-PSL---RDSLILVLRKAMFSRELDARQMAVNGFL 157 (158)
T ss_dssp HHHHHHHHHHHHTT--HHH---HHHHHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-HHH---HHHHHHHHHHHHccccHHHHHHHHHHhc
Confidence 2222222221 111 222 2456778999999999999999998774
No 291
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=45.40 E-value=24 Score=32.72 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHH
Q 001582 953 TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIY 1032 (1049)
Q Consensus 953 t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l~~L~~s~~kLL~~y 1032 (1049)
.+.+++-.|..+|..++-+. -..+|.++..|.+..+| ...|++++.+|+-++.+.--|...-+=..+++.|+..|+.+
T Consensus 5 ~rH~~VLGL~Alv~a~Py~v-P~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D~W~~~~~~Ft~~ql~~l~~~ 82 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDV-PPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQDTWHEHKKKFTEDQLEDLEDV 82 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--S-S-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTSTTHHHHGGG--SSTTGGGSS-
T ss_pred HHHHHHHHHHHHHHHcCCCC-cccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcccHHHHHHhCCHHHHHHHHcC
Confidence 34566667777787775333 34788888888998887 78999999999999998886655555567777777776544
No 292
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=45.26 E-value=1.1e+02 Score=29.16 Aligned_cols=74 Identities=16% Similarity=0.367 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhCC--CcHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh-cCCchhhhHHHHHHHHHHHhhcCC
Q 001582 465 EKVMKLFFQHLDD--PHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRL-IDPKELVRQPCSTTLDIVSKTYSV 540 (1049)
Q Consensus 465 ~~l~~~l~~~l~D--sn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~~ll~kl-gD~k~~vR~~a~~~L~~~~e~~~~ 540 (1049)
..+++++.+++.. +..|+ .+|-.+-+++..++..-..+....++.+|... ...-+.+|.+..+.+++|.+.+..
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL--~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW~~~~~f 112 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKL--PLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIWEERFVF 112 (114)
T ss_pred HHHHHHHHHHHHhCCcccch--HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCCCC
Confidence 4566666665544 34455 67777888888888776666666656665554 455677999999999999876543
No 293
>PF07778 CENP-I: Mis6 ; InterPro: IPR012485 Centromere protein Cenp-I (also known as Mis6) is an essential centromere connector protein acting during G1-S phase of the cell cycle. Mis6 is thought to be required for recruiting Cenp-A, the centromere- specific histone H3 variant; an important event for centromere function and chromosome segregation during mitosis [, ].
Probab=45.22 E-value=1.5e+02 Score=36.20 Aligned_cols=101 Identities=15% Similarity=0.225 Sum_probs=58.5
Q ss_pred hhcCCcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCC-----C------CChhhHHHHHHhHccccCCCCHH
Q 001582 536 KTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEG-----S------GNLGILKLWLAKLTPLVHDKNTK 604 (1049)
Q Consensus 536 e~~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~-----~------~~~~~~~~~l~~l~~~~~Dkn~~ 604 (1049)
+.++.+.++.++..+.....++..++.+|+||+..+. + .+... | -....++.++-+++-|++. ..+
T Consensus 129 ~~v~~~~v~~ivs~Lg~~k~s~~~Q~~llrWLi~v~~-~-id~~~~L~~~Y~vlF~~L~~~~lrp~~chLL~llTr-r~~ 205 (511)
T PF07778_consen 129 ERVSEDVVVRIVSWLGVGKPSPSTQALLLRWLIAVYD-F-IDDKDVLSKLYGVLFNLLDYESLRPYLCHLLYLLTR-REH 205 (511)
T ss_pred CcCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH-H-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccc
Confidence 3455555555555444443478999999999986542 1 22111 0 1123456667777777654 233
Q ss_pred HHHHHHHHHHHHHHhcCchhHHHHhhcCCHHHHHHHHHHHhhhchh
Q 001582 605 LKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPR 650 (1049)
Q Consensus 605 VR~aA~~~L~~ly~h~~~~~~~~~l~~L~~~~~~~~~~aL~~~~p~ 650 (1049)
||.-=+..|..|++.+|.+ ++...+++..|.|.|+
T Consensus 206 VkpfRi~~Ll~L~~k~g~~-----------~~L~~LL~lyK~y~Pe 240 (511)
T PF07778_consen 206 VKPFRIQKLLDLQNKFGMD-----------PHLQGLLSLYKSYYPE 240 (511)
T ss_pred CchHHHHHHHHHHhccCCC-----------HHHHHHHHHHHHhCcc
Confidence 6777777788888877643 3334444555555555
No 294
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=45.19 E-value=1.4e+02 Score=28.57 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhh-hHHHHHHH---HHHHHH-HhC
Q 001582 838 GALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV-MEDSVEIV---IEKLLH-VTK 912 (1049)
Q Consensus 838 ~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~-~~~~~e~l---Lp~Ll~-~~~ 912 (1049)
+.++.+..++.++. ++-..+...+.+.+....+.-+...|.++..|+++.... ...|...+ ++.++. .+.
T Consensus 14 ~~I~~lt~~~~~~~-----~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~ 88 (121)
T smart00582 14 ESIQTLTKWAIEHA-----SHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLG 88 (121)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554432 233456666777776655556667788999999876543 12222222 232222 222
Q ss_pred CCcHHHHHHHHHHHHHHHh--hcCchh
Q 001582 913 DAVPKVSNEAEHCLTVVLS--QYDPFR 937 (1049)
Q Consensus 913 Ds~~~Vr~aA~~~l~~i~~--~~~p~~ 937 (1049)
...+.++.....+++.|-+ .++++.
T Consensus 89 ~~~~~~~~ki~kll~iW~~~~iF~~~~ 115 (121)
T smart00582 89 AANDETKKKIRRLLNIWEERGIFPPSV 115 (121)
T ss_pred hCCHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 3336788888888888887 566543
No 295
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=44.77 E-value=2.8e+02 Score=36.15 Aligned_cols=142 Identities=15% Similarity=0.089 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCch----
Q 001582 861 QILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF---- 936 (1049)
Q Consensus 861 ~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~---- 936 (1049)
-+-..+....-|+...||..||..+..+++-+.+.+ ...+|..+++..-|.+--++++++.++-.=-..+.-.
T Consensus 472 ~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~---~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt 548 (1529)
T KOG0413|consen 472 VLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHRE---AFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTT 548 (1529)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccc---hHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccch
Confidence 344456666778889999999999999998887776 4457788888888887777766665543211111110
Q ss_pred hhH-----------------------Hhhhhhh----cc-cchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHh
Q 001582 937 RCL-----------------------SVIVPLL----VT-EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAF 988 (1049)
Q Consensus 937 ~~l-----------------------~vL~p~l----~s-~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~ 988 (1049)
..+ +.++..| .+ ...+.+..++..+......+.-..+ .++.+-.|-..+
T Consensus 549 ~~l~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~---fe~~L~iLq~lC 625 (1529)
T KOG0413|consen 549 DLLLDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASK---FEVVLSILQMLC 625 (1529)
T ss_pred hhcCcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhc---chhHHHHHHHHh
Confidence 000 0001111 00 1122333444444444433322222 233345567778
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q 001582 989 GNQSADVRKTVVFCLVDIYI 1008 (1049)
Q Consensus 989 ~D~~seVRKaAv~clv~l~~ 1008 (1049)
.|+-..|||.+...|.++..
T Consensus 626 rd~~vsvrk~~~~Sltel~~ 645 (1529)
T KOG0413|consen 626 RDRMVSVRKTGADSLTELML 645 (1529)
T ss_pred cCcchHHHHHHHHHHHHHHh
Confidence 89999999999998877654
No 296
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=44.60 E-value=5e+02 Score=29.12 Aligned_cols=78 Identities=22% Similarity=0.341 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHHHHhcC---c----chHHHHHH
Q 001582 436 WCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQH-LDDPHHKVAQAALSTLADIIPSCR---K----PFESYMER 507 (1049)
Q Consensus 436 WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~-l~Dsn~kV~~~aL~tL~~l~~~~~---~----~~~~~l~~ 507 (1049)
=-+|.--+..+-.++..+.. +...+++++... -.+.+.-|...+++.|..+...+. + .|+.|+..
T Consensus 35 ~~~R~~ll~D~~al~~~g~~-------~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 107 (324)
T PF11838_consen 35 PLDRAQLLDDLFALARAGRL-------SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRR 107 (324)
T ss_dssp HHHHHHHHHHHHHHHHTTSS--------HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34566667777777777652 577888999888 799999999999999999985554 1 27778889
Q ss_pred HHHHHHHHhc-CCc
Q 001582 508 ILPHVFSRLI-DPK 520 (1049)
Q Consensus 508 lL~~ll~klg-D~k 520 (1049)
++..+++++| +..
T Consensus 108 l~~~~~~~l~~~~~ 121 (324)
T PF11838_consen 108 LLEPLYERLGWDPR 121 (324)
T ss_dssp HHHHHHHH--SSSS
T ss_pred HHHHHHHHcCCCCc
Confidence 9999999996 554
No 297
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=44.56 E-value=6.3e+02 Score=30.34 Aligned_cols=135 Identities=11% Similarity=0.135 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT 911 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~-n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~ 911 (1049)
|--...++.-|..++..+...........++.+|...|... +...+..|+.+|..|++.-..+..=+-...++.|++.+
T Consensus 115 ~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L 194 (429)
T cd00256 115 QFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLL 194 (429)
T ss_pred hhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHH
Confidence 55666677777777755432221111222344555565543 34466677889999987555442111111445555544
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcCch--------hhHHhhhhhhcc-cchhHHHHHHHHHHHHHhh
Q 001582 912 KDAVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLVT-EDEKTLVTCINCLTKLVGR 967 (1049)
Q Consensus 912 ~Ds~~~Vr~aA~~~l~~i~~~~~p~--------~~l~vL~p~l~s-~~~~t~~~al~~L~~lie~ 967 (1049)
....-.+.-.=+.++-.|+-.+.+. .+++.++.+++. .+.++...|+-.+..++..
T Consensus 195 ~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 195 SNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred hhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 4322123333334444444444433 466777777753 4567777777777777753
No 298
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=44.30 E-value=2e+02 Score=33.10 Aligned_cols=83 Identities=18% Similarity=0.078 Sum_probs=57.3
Q ss_pred CCCcHHHHHHHHHHHHHHHhhc---CchhhHHhhhhhhcccchhHHHHHHHHHHHHHh----hcCHHHHHhhhhhHHHHH
Q 001582 912 KDAVPKVSNEAEHCLTVVLSQY---DPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVG----RLSQEELMAQLPSFLPAL 984 (1049)
Q Consensus 912 ~Ds~~~Vr~aA~~~l~~i~~~~---~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie----~~~~~~l~~~L~~iip~L 984 (1049)
++.++.+..++..++-.++..+ .|..++..+.-++..++.+.|..-+.+++.++. .-....+...+|.++..+
T Consensus 33 KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 112 (339)
T PF12074_consen 33 KESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSL 112 (339)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHH
Confidence 5777888888888888777665 456788999999988888788877888877775 111223334455555556
Q ss_pred HHHhcCCCHH
Q 001582 985 FEAFGNQSAD 994 (1049)
Q Consensus 985 ~~~~~D~~se 994 (1049)
-++..++-..
T Consensus 113 ~~~~~~p~~~ 122 (339)
T PF12074_consen 113 KEASANPLQS 122 (339)
T ss_pred HHHHhCCCCc
Confidence 6666665544
No 299
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.26 E-value=2.1e+02 Score=38.67 Aligned_cols=138 Identities=19% Similarity=0.254 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhc---CchhhHHhhhhhhc
Q 001582 874 DSSVREVALSLINEMLKNQKDVME---DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY---DPFRCLSVIVPLLV 947 (1049)
Q Consensus 874 n~~vr~~AL~~L~~L~~~~~~~~~---~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~---~p~~~l~vL~p~l~ 947 (1049)
...+|...+..|-.|++..++..- +++-.+|-.+++......+.|++-+-.|++.|..-+ -|..|+..++..+-
T Consensus 855 ~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~ 934 (1610)
T KOG1848|consen 855 GVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLL 934 (1610)
T ss_pred cceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHH
Confidence 355888889999888887665421 334445556667666778999999999999998664 34566666665553
Q ss_pred ----cc-chhHHHHHH---HHHHHHHhh----cCHHHH-------------------HhhhhhHHHHHHHHhcCCCHHHH
Q 001582 948 ----TE-DEKTLVTCI---NCLTKLVGR----LSQEEL-------------------MAQLPSFLPALFEAFGNQSADVR 996 (1049)
Q Consensus 948 ----s~-~~~t~~~al---~~L~~lie~----~~~~~l-------------------~~~L~~iip~L~~~~~D~~seVR 996 (1049)
.+ |-.+-+.|+ -.++..+.. .+.+.. +...--++-.|.++++|.-.+||
T Consensus 935 ~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVR 1014 (1610)
T KOG1848|consen 935 VFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEVR 1014 (1610)
T ss_pred HHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHHh
Confidence 11 111222222 222222211 111111 11122356778999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 001582 997 KTVVFCLVDIYIMLG 1011 (1049)
Q Consensus 997 KaAv~clv~l~~~lG 1011 (1049)
+.|+..+..+...-|
T Consensus 1015 ngAvqtlfri~~Shg 1029 (1610)
T KOG1848|consen 1015 NGAVQTLFRIFNSHG 1029 (1610)
T ss_pred hhHHHHHHHHHhhhc
Confidence 999999988776555
No 300
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=43.76 E-value=2.7e+02 Score=29.35 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCch-h---hHHhhhhhhcc-----cchhHHHHHHHHHHHHHhhc
Q 001582 898 DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-R---CLSVIVPLLVT-----EDEKTLVTCINCLTKLVGRL 968 (1049)
Q Consensus 898 ~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~-~---~l~vL~p~l~s-----~~~~t~~~al~~L~~lie~~ 968 (1049)
+.+..++..|+....++-+.||..|-.|+..+.....+. . ..+.|..++.. -+|..-..++..+..|+.
T Consensus 3 ~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~-- 80 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLLD-- 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHhc--
Confidence 345567888888888888899999999999888443231 0 11222222221 125544555655555542
Q ss_pred CHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001582 969 SQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1009 (1049)
Q Consensus 969 ~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~ 1009 (1049)
.+ ..-..++.+++-.++.-..++.++|..+|+.++.-
T Consensus 81 -~~---~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~ 117 (193)
T PF12612_consen 81 -LP---EYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRE 117 (193)
T ss_pred -cH---HHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence 22 23456788999999998889999999999888763
No 301
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=43.54 E-value=1.8e+02 Score=28.61 Aligned_cols=74 Identities=24% Similarity=0.302 Sum_probs=49.7
Q ss_pred HhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhhhhhhHHHHHH---HHHHHHH--Hh----CCCcHHHHHHHHHH
Q 001582 857 KYFNQILTAVLEVLDDA--DSSVREVALSLINEMLKNQKDVMEDSVEI---VIEKLLH--VT----KDAVPKVSNEAEHC 925 (1049)
Q Consensus 857 ~~f~~lL~~Ll~~L~D~--n~~vr~~AL~~L~~L~~~~~~~~~~~~e~---lLp~Ll~--~~----~Ds~~~Vr~aA~~~ 925 (1049)
+.|..|+..|.+.|.|. +-...-.||.+|..|+++-..++-..+.. +|-.|-+ .. .|....||+.|...
T Consensus 33 ~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d~~g~d~G~~VR~ka~~i 112 (123)
T cd03571 33 VEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQYIDENGKDQGINVREKAKEI 112 (123)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccceeeCCCCCchhHHHHHHHHHH
Confidence 46888999999999886 45567789999999999877665544322 2333321 11 14456788888877
Q ss_pred HHHHH
Q 001582 926 LTVVL 930 (1049)
Q Consensus 926 l~~i~ 930 (1049)
+..+-
T Consensus 113 ~~Ll~ 117 (123)
T cd03571 113 LELLE 117 (123)
T ss_pred HHHhC
Confidence 76553
No 302
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.32 E-value=2.8e+02 Score=36.69 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHH
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ--KDVMEDSVEIVIEKLLHV 910 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~--~~~~~~~~e~lLp~Ll~~ 910 (1049)
++-|..-+++|..+++.-...+....| |+-+-=.|.|++..||..++.+|..|..+- ...++.|...+=..+++.
T Consensus 301 ~~IRaiCiqeLgiWi~~yP~~Fl~dsY---LKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeM 377 (1048)
T KOG2011|consen 301 PDIRAICIQELGIWIKSYPEIFLSDSY---LKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEM 377 (1048)
T ss_pred hHHHHHHHHHHHHHHHhccHHHhcchH---HHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 668888899988888654433333332 222222458999999999999999999762 345677777777778877
Q ss_pred h-CCCcHHHHHHHHH-HHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHH-HHHhhc
Q 001582 911 T-KDAVPKVSNEAEH-CLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLT-KLVGRL 968 (1049)
Q Consensus 911 ~-~Ds~~~Vr~aA~~-~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~-~lie~~ 968 (1049)
. .|-...|+..+.. |+......+-+...+..+..+|=..+.+...++-..|- +++++.
T Consensus 378 adrd~~~~Vrav~L~~~~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~ 438 (1048)
T KOG2011|consen 378 ADRDRNVSVRAVGLVLCLLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERV 438 (1048)
T ss_pred HhhhcchhHHHHHHHHHHHHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhccc
Confidence 6 4444445444333 22222233334445555566665566666666654443 444443
No 303
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=43.16 E-value=1.4e+02 Score=33.06 Aligned_cols=97 Identities=13% Similarity=0.198 Sum_probs=61.7
Q ss_pred HHHHHHHhccCCCC--ChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCH--------HHHHHHHHHHHH
Q 001582 818 IPQILHLMCNGNDG--SPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADS--------SVREVALSLINE 887 (1049)
Q Consensus 818 I~~lL~~l~~~~~~--~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~--------~vr~~AL~~L~~ 887 (1049)
+.+++..+...... ...-|-++|--+...|-...+..-...|...+..|+++...+.. ..+..||++|+.
T Consensus 144 L~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~ 223 (255)
T PF10350_consen 144 LDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRA 223 (255)
T ss_pred HHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHH
Confidence 45666666554111 13456677766555443332221114577777778877755322 378889999999
Q ss_pred HHHh--hhhhhHHHHHHHHHHHHHHhCCC
Q 001582 888 MLKN--QKDVMEDSVEIVIEKLLHVTKDA 914 (1049)
Q Consensus 888 L~~~--~~~~~~~~~e~lLp~Ll~~~~Ds 914 (1049)
|+++ +...+.+|++..+..-|+.+.++
T Consensus 224 if~ds~L~~~~~~yi~~~l~lai~~f~s~ 252 (255)
T PF10350_consen 224 IFRDSKLSEDVSPYIEDALILAIKGFSSP 252 (255)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 9984 45778899888887777777654
No 304
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=43.03 E-value=2.4e+02 Score=32.97 Aligned_cols=134 Identities=19% Similarity=0.248 Sum_probs=85.6
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcH--------------HHHHHHHHHHHHHHHhc
Q 001582 432 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHH--------------KVAQAALSTLADIIPSC 497 (1049)
Q Consensus 432 ~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~--------------kV~~~aL~tL~~l~~~~ 497 (1049)
...||+.=.--|..|-..|++..- +. ...+..|++.|.+++.|.+. -|...++.+|+.|+..|
T Consensus 152 ~e~dWeV~s~VL~hLp~qL~Nk~L-f~--~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~Ls~LisYh 228 (356)
T PF03542_consen 152 HETDWEVYSYVLVHLPSQLSNKAL-FL--GADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPVLSALISYH 228 (356)
T ss_pred cCCCcHHHHHHHHHHHHHhhhhHH-hc--cCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999888875332 11 12366677766666655442 27778899999999998
Q ss_pred CcchHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhcc----CCCHHHHHHHHHHHHHHhhh
Q 001582 498 RKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDE----QRSPKAKLAVIEFAISSLNK 573 (1049)
Q Consensus 498 ~~~~~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~----~~~pkvk~~~L~~l~~~l~~ 573 (1049)
..-=+..-+.++..+..-|+. | .-..|..+|++..-.+| +.+...|-.++.. ..++.+-+.+||||. .|..
T Consensus 229 ~~~~k~~qd~iV~~l~~GL~s-~--~a~~CI~aLtic~~EmP-~s~~k~L~~iL~kLs~i~tt~~~Ai~ILEFLs-~L~~ 303 (356)
T PF03542_consen 229 SHFSKQEQDEIVRALESGLGS-K--TAKPCIHALTICCYEMP-DSMKKLLPSILLKLSKISTTPNMAIHILEFLS-SLSR 303 (356)
T ss_pred HhcCHhHHHHHHHHHHHHhcc-C--cHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhhccchhhHHHHHHHHH-HHhh
Confidence 622234455666666666654 2 23456777777664454 3333333333332 136788889999996 5654
No 305
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=42.95 E-value=37 Score=26.74 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCchhhhHHHHHHH
Q 001582 507 RILPHVFSRLIDPKELVRQPCSTTL 531 (1049)
Q Consensus 507 ~lL~~ll~klgD~k~~vR~~a~~~L 531 (1049)
.+...+..+|.|.+.+||++|..+|
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 7788889999999999999987754
No 306
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=42.66 E-value=3.3e+02 Score=39.52 Aligned_cols=202 Identities=16% Similarity=0.209 Sum_probs=105.6
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCc-----cchHHhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHh
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDH-----SIWTKYFNQILTAVLEV-LDDADSSVREVALSLINEMLKN 891 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~-----~~w~~~f~~lL~~Ll~~-L~D~n~~vr~~AL~~L~~L~~~ 891 (1049)
+.+.+...-.+.+ .+-|+.+...+..+++.... ..--+.|+.++..++.. +.|.++.++...+..+.
T Consensus 482 ~~~~~~~~~~~~~--~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~----- 554 (2341)
T KOG0891|consen 482 VQQCVDSYLEADD--SEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN----- 554 (2341)
T ss_pred HHHHHHHHHhccc--HHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc-----
Confidence 4444444433321 56777776555555532211 00113467677776653 35677777777665555
Q ss_pred hhhhhHHHHH--HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhh--------hhhhcccchhHHHHHHHHH
Q 001582 892 QKDVMEDSVE--IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVI--------VPLLVTEDEKTLVTCINCL 961 (1049)
Q Consensus 892 ~~~~~~~~~e--~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL--------~p~l~s~~~~t~~~al~~L 961 (1049)
.+|.+.+. ..+-.++.++.|..-.++.++...+..+.. ++|..+++.+ .+..-+....+...|-+.+
T Consensus 555 --~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~-~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~ 631 (2341)
T KOG0891|consen 555 --ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSS-YNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLL 631 (2341)
T ss_pred --cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhcccccc-ccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHh
Confidence 12221100 122224444555555555555555544333 2332222221 1111112223444444444
Q ss_pred HHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHH
Q 001582 962 TKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVT 1030 (1049)
Q Consensus 962 ~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l~~L~~s~~kLL~ 1030 (1049)
..++... +.-+......++-.+..-+.|.++.|-+++++|+..++.+.|+++..++..+-+.-.+.|.
T Consensus 632 ~~~i~~~-~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~ 699 (2341)
T KOG0891|consen 632 CELIISS-PVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQ 699 (2341)
T ss_pred hHHHHHH-HHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHH
Confidence 4444222 2222344455556667777789999999999999999999998877766655555555544
No 307
>COG1017 Hmp Hemoglobin-like flavoprotein [Energy production and conversion]
Probab=42.04 E-value=2.1e+02 Score=28.86 Aligned_cols=113 Identities=14% Similarity=0.206 Sum_probs=77.6
Q ss_pred HHhhhhcceeeeccHHHHHHHHHhhC--CCcccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCc----hhhh----h
Q 001582 7 FKLVVITVLVIAESSDNCIKTMLRNC--KAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDA----PEIQ----R 76 (1049)
Q Consensus 7 lkl~~~t~kv~a~sa~~~i~~ii~~~--~~~rll~~i~~~~~~~Ks~~~R~~~~~~l~~~L~~w~~~----~~le----~ 76 (1049)
+.++-.|.-+..+.|..-+..+.+.- ++|-+++.+..+ +.|+-..++..+.-+...=...++- +.++ |
T Consensus 7 ~~iIKaTvPlL~~~G~~iT~~FY~~MF~~hPEl~niFN~~--nQ~~G~Q~~aLA~ai~ayA~nIdnl~~l~~~v~rIa~K 84 (150)
T COG1017 7 IAIIKATVPLLEEHGETITAHFYKRMFAHHPELKNIFNMA--NQKNGDQPKALANAILAYAKNIDNLEALLPVVERIAHK 84 (150)
T ss_pred HHHHHHhhHHHHhcchHHHHHHHHHHHhhCHHHHHHHhHh--hhcccccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 44566677777888887777777754 678999877665 4566666666665544443332221 1111 2
Q ss_pred c---------H----HHHHHHHHHhccCC-ChHHHHHHHHHHHHHHhhChHHHHHHHhc
Q 001582 77 S---------A----DLYEDLIRCCVADA-MSEVRSTARMCYRMFAKTWPERSRRLFSS 121 (1049)
Q Consensus 77 ~---------~----~~le~~ikk~l~DA-~~~vR~~aR~~fw~f~~~~P~~a~~l~~~ 121 (1049)
| . .-|-.+|+..|+|+ .++|=+.=.++||.+.++|=++=..||..
T Consensus 85 Hvsl~I~pEhYpIVge~LL~aI~evlgd~at~evl~AW~~AY~~lA~~lI~~Ek~lY~~ 143 (150)
T COG1017 85 HVSLQIKPEHYPIVGEHLLAAIKEVLGDAATPEVLEAWGEAYGVLADVLIDREKKLYEE 143 (150)
T ss_pred HHhcCCChhhccHHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 1 44566788999998 69999999999999999999888888764
No 308
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=41.64 E-value=2.3e+02 Score=35.15 Aligned_cols=173 Identities=16% Similarity=0.154 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHHHHHhcCCc----cchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhh---h-----hHHHH
Q 001582 833 PTSKHGALQQLIKASVANDH----SIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD---V-----MEDSV 900 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~----~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~---~-----~~~~~ 900 (1049)
++.|++-+.-|.. +....+ .+....|+.+...++=.+..-+-+|.+.+|.+|-.|+++... . +.+|.
T Consensus 848 pEhr~~f~~Ll~~-inl~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~mg~~~~n~F~~~yy 926 (1053)
T COG5101 848 PEHRKNFLLLLEN-INLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEMGVPFINQFYAQYY 926 (1053)
T ss_pred hHHHHHHHHHHHH-HHHHhHHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 6677776664444 333322 244567888888888888877788899999999999886532 1 34556
Q ss_pred HHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhh
Q 001582 901 EIVIEKLLHVTKDA--VPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLP 978 (1049)
Q Consensus 901 e~lLp~Ll~~~~Ds--~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~ 978 (1049)
-.++..++-.+-|+ +......+.-.+..+--+.+.. +-.|.....+.......--+.+.+++.. +....+.+.
T Consensus 927 ~s~l~~il~vltDsDhKsgF~~Q~Llla~li~lv~dnk----isVPlyd~~~~n~~~lseyi~~l~~~sf-p~it~e~v~ 1001 (1053)
T COG5101 927 MSTLENILGVLTDSDHKSGFDQQCLLLAFLIRLVKDNK----ISVPLYDGINPNITILSEYIVGLFVKSF-PNITQESVK 1001 (1053)
T ss_pred HHHHHHHHeeeeccchhccchHHHHHHHHHHHHHhccc----cccccccCCCCchhhHHHHHHHHHHhhc-CcccHHHHH
Confidence 66666666655554 2333333333333332222211 1123333333222222223333444444 344455667
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh
Q 001582 979 SFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK 1012 (1049)
Q Consensus 979 ~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe 1012 (1049)
.+.-+|++.++|. ---+.......|.+|..-||
T Consensus 1002 ~f~~~l~~~~~d~-~ifk~~~~df~vkv~e~g~d 1034 (1053)
T COG5101 1002 IFSVGLFELCGDD-EIFKEHVEDFRVKVYEFGTD 1034 (1053)
T ss_pred HHHHHHHHHhCcH-HHHHHHHHHHhhheeeeCCC
Confidence 7888899998874 23455666778888877776
No 309
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=40.73 E-value=5.3e+02 Score=28.77 Aligned_cols=81 Identities=17% Similarity=0.276 Sum_probs=52.8
Q ss_pred cCCccchH-HhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhh--------hhhHHHHHHHHHHHHHHhCCCc----
Q 001582 849 ANDHSIWT-KYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK--------DVMEDSVEIVIEKLLHVTKDAV---- 915 (1049)
Q Consensus 849 ~~~~~~w~-~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~--------~~~~~~~e~lLp~Ll~~~~Ds~---- 915 (1049)
+.-+..|+ ..|..+-..+++.|..++. -+.++++|..|..-.. .++--.+-..+|.+++.+.++.
T Consensus 51 ~~~p~~we~~~f~Glq~Ll~KGL~Ss~t--~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~ 128 (262)
T PF14225_consen 51 SSQPQLWEWGNFEGLQPLLLKGLRSSST--YELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQP 128 (262)
T ss_pred HhCCccccCCCchhHHHHHhCccCCCCc--HHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccc
Confidence 34455575 7899899999999987654 5567888888775321 2343345568999999998876
Q ss_pred -HHHHHHHHHHHHHHHhh
Q 001582 916 -PKVSNEAEHCLTVVLSQ 932 (1049)
Q Consensus 916 -~~Vr~aA~~~l~~i~~~ 932 (1049)
..+...| +.+..+++.
T Consensus 129 ~~~~~~~A-~~La~~a~~ 145 (262)
T PF14225_consen 129 DQECIEIA-EALAQVAEA 145 (262)
T ss_pred cHHHHHHH-HHHHHHHHh
Confidence 4444444 334444443
No 310
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=40.73 E-value=65 Score=31.00 Aligned_cols=76 Identities=12% Similarity=0.319 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhC--CCcHHHHHHHHHHHHHHHHhcCcc----hHHHHHHHHHHHHHHhc-CCchhhhHHHHHHHHHHHh-
Q 001582 465 EKVMKLFFQHLD--DPHHKVAQAALSTLADIIPSCRKP----FESYMERILPHVFSRLI-DPKELVRQPCSTTLDIVSK- 536 (1049)
Q Consensus 465 ~~l~~~l~~~l~--Dsn~kV~~~aL~tL~~l~~~~~~~----~~~~l~~lL~~ll~klg-D~k~~vR~~a~~~L~~~~e- 536 (1049)
.++++++.+.+. .++.|+ ..|=.+.+++..++.. |.+-+.-.++.+|..+. ...+.+|.++.+.|++|.+
T Consensus 31 ~~Iv~~i~~~~~~~~~~~kL--~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~~ 108 (121)
T smart00582 31 KEIVELWEKYIKKAPPPRKL--PLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLGAANDETKKKIRRLLNIWEER 108 (121)
T ss_pred HHHHHHHHHHHHhCCcccee--hhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC
Confidence 456666666553 345566 3555666777665433 33333333444444442 2235699999999999997
Q ss_pred -hcCCcc
Q 001582 537 -TYSVDS 542 (1049)
Q Consensus 537 -~~~~d~ 542 (1049)
.|+++.
T Consensus 109 ~iF~~~~ 115 (121)
T smart00582 109 GIFPPSV 115 (121)
T ss_pred CCCCHHH
Confidence 788764
No 311
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=40.29 E-value=3.7e+02 Score=34.23 Aligned_cols=187 Identities=17% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCc-cchHHhHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCc
Q 001582 839 ALQQLIKASVANDH-SIWTKYFNQILTAVLE--VLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAV 915 (1049)
Q Consensus 839 aL~~L~~li~~~~~-~~w~~~f~~lL~~Ll~--~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~ 915 (1049)
+|.=+..+++.+.+ .+-.+++-.+|..+++ .|..+|..||.+|-.+....++-++..+-+|++.++.+|=+.+..+.
T Consensus 510 qLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~v 589 (980)
T KOG2021|consen 510 QLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKV 589 (980)
T ss_pred HHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Q ss_pred HHHH------------------------------HHHHHHHHHHHhhcCchhhHHhhhhhhcc-cchhHHHHHHHHHHHH
Q 001582 916 PKVS------------------------------NEAEHCLTVVLSQYDPFRCLSVIVPLLVT-EDEKTLVTCINCLTKL 964 (1049)
Q Consensus 916 ~~Vr------------------------------~aA~~~l~~i~~~~~p~~~l~vL~p~l~s-~~~~t~~~al~~L~~l 964 (1049)
..+- +.-...++.++.-.=-...+..+...+.+ .+.+..+.-+.+..--
T Consensus 590 tt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lma 669 (980)
T KOG2021|consen 590 TTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMA 669 (980)
T ss_pred CCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Q ss_pred HhhcCH---------------HHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHH
Q 001582 965 VGRLSQ---------------EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLR 1027 (1049)
Q Consensus 965 ie~~~~---------------~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l~~L~~s~~k 1027 (1049)
+..... ......+..|++.+..--...+ +|.++++.+--+..++|+++.||++++-+--++
T Consensus 670 ig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~--iRsavrft~hRmI~~lg~~vlPfipklie~lL~ 745 (980)
T KOG2021|consen 670 IGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFEN--IRSAVRFTFHRMIPILGNKVLPFIPKLIELLLS 745 (980)
T ss_pred HHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccch--hHHHHHHHHHHHHHhcchhhhcchHHHHHHHHh
No 312
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.14 E-value=8.6e+02 Score=33.35 Aligned_cols=106 Identities=19% Similarity=0.260 Sum_probs=70.0
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhh----cCch----hhHHhhhhhhcc------cchhHHH-------HH---
Q 001582 902 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ----YDPF----RCLSVIVPLLVT------EDEKTLV-------TC--- 957 (1049)
Q Consensus 902 ~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~----~~p~----~~l~vL~p~l~s------~~~~t~~-------~a--- 957 (1049)
.++-.|.+++.|+..+||+.|.+++-.++.. +++. -|..+++|++.+ ++|.... .|
T Consensus 997 ~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~lt 1076 (1610)
T KOG1848|consen 997 MLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLT 1076 (1610)
T ss_pred HHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhh
Confidence 4566677888999999999999998777754 3342 388999999973 2232111 12
Q ss_pred HHHHHHHHhhcCHH-----HHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001582 958 INCLTKLVGRLSQE-----ELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1007 (1049)
Q Consensus 958 l~~L~~lie~~~~~-----~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~ 1007 (1049)
|.-+.+++..+-+. .+......++.-+.+...|..+++.-+|+.|+-++.
T Consensus 1077 isgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1077 ISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 23334444333221 112334456667788888999999999999997664
No 313
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=39.77 E-value=2.2e+02 Score=26.90 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 001582 438 ARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIP 495 (1049)
Q Consensus 438 eR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~ 495 (1049)
.|.-||+.|..-++.+=-....+. +-..++..|..||+.+..-....+|+.|..++.
T Consensus 3 IR~RAL~~I~~Kl~~~Li~~~dl~-~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~ 59 (98)
T PF14726_consen 3 IRVRALESIEFKLEHGLISEEDLV-KERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK 59 (98)
T ss_pred HHHHHHHHHHHHHHhccccHHHHc-cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh
Confidence 588899999888875433233332 345678888999999888888889999988654
No 314
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=39.63 E-value=6.4e+02 Score=30.18 Aligned_cols=88 Identities=13% Similarity=0.137 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHH-hh--
Q 001582 862 ILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS-VEIVIEKLLHVT-----KDAVPKVSNEAEHCLTVVL-SQ-- 932 (1049)
Q Consensus 862 lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~-~e~lLp~Ll~~~-----~Ds~~~Vr~aA~~~l~~i~-~~-- 932 (1049)
+|.-++.|+...|++....+--.|..++++-...+ ++ -..++.+|++++ .|.+-++..++-.+++.++ .+
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci-~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n 394 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICI-QLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN 394 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHH-HHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc
Confidence 67778889898999988887778888887544322 22 123555555544 2445677788888888665 11
Q ss_pred ---cCchhhHHhhhhhhcccc
Q 001582 933 ---YDPFRCLSVIVPLLVTED 950 (1049)
Q Consensus 933 ---~~p~~~l~vL~p~l~s~~ 950 (1049)
+-|..+...+.+.++...
T Consensus 395 ka~~~~aGvteaIL~~lk~~~ 415 (604)
T KOG4500|consen 395 KAHFAPAGVTEAILLQLKLAS 415 (604)
T ss_pred hhhccccchHHHHHHHHHhcC
Confidence 223345556666666543
No 315
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=39.36 E-value=4.3e+02 Score=29.34 Aligned_cols=81 Identities=22% Similarity=0.317 Sum_probs=44.8
Q ss_pred hcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhH----HHHHHHHhcC--CCHHHHHHHHHHHHH
Q 001582 932 QYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSF----LPALFEAFGN--QSADVRKTVVFCLVD 1005 (1049)
Q Consensus 932 ~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~i----ip~L~~~~~D--~~seVRKaAv~clv~ 1005 (1049)
...-.++++.|+.++...+. .+..++.-+-++.+...+..+ ++.|.+.+.| .+.-||-+|..+++.
T Consensus 68 q~re~~A~~~li~l~~~~~~--------~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 68 QFREERALPPLIRLFSQDDD--------FLEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred HHhhhhhHHHHHHHHcCCcc--------hHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 34555677777776643322 122233333334443333333 2345666665 566799999999987
Q ss_pred HHHHhh---hhHHHhhhc
Q 001582 1006 IYIMLG---KAFLPYLER 1020 (1049)
Q Consensus 1006 l~~~lG---e~l~p~l~~ 1020 (1049)
+...-. +++..||..
T Consensus 140 l~~~~~~~Re~vi~~f~~ 157 (249)
T PF06685_consen 140 LVHEGPISREEVIQYFRE 157 (249)
T ss_pred HHHcCCCCHHHHHHHHHH
Confidence 765444 356676654
No 316
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.22 E-value=2.4e+02 Score=37.37 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=69.1
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHhhcCchh----hHHhhhhhhcccchhHHHHHHHHHHHHHhhc-CHHHHHhhhhhHHHH
Q 001582 909 HVTKDAVPKVSNEAEHCLTVVLSQYDPFR----CLSVIVPLLVTEDEKTLVTCINCLTKLVGRL-SQEELMAQLPSFLPA 983 (1049)
Q Consensus 909 ~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~----~l~vL~p~l~s~~~~t~~~al~~L~~lie~~-~~~~l~~~L~~iip~ 983 (1049)
+.+.|..+.||....+.|-.|+..||-.- .|+++==.|..++..+|+.|++.|..|++.- -...|..-...+=.-
T Consensus 294 HRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~R 373 (1048)
T KOG2011|consen 294 HRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDR 373 (1048)
T ss_pred eecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 66788888999998888888888887642 3455432233466778888888888888761 012222222333333
Q ss_pred HHHHh-cCCCHHHHHHHHHHHHHH--HHHhhh-hHHHhhhcCChh
Q 001582 984 LFEAF-GNQSADVRKTVVFCLVDI--YIMLGK-AFLPYLERLNST 1024 (1049)
Q Consensus 984 L~~~~-~D~~seVRKaAv~clv~l--~~~lGe-~l~p~l~~L~~s 1024 (1049)
++... -|.+.+||-.....+... +..+.+ ++.+...-+-++
T Consensus 374 IVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d~di~~Vy~Li~d~ 418 (1048)
T KOG2011|consen 374 IVEMADRDRNVSVRAVGLVLCLLLSSSGLLSDKDILIVYSLIYDS 418 (1048)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHhcccccChhHHHHHHHHHhcc
Confidence 44444 466777777776666554 223333 566555443333
No 317
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.16 E-value=1.5e+02 Score=32.03 Aligned_cols=108 Identities=14% Similarity=0.155 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHh
Q 001582 835 SKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ---KDVMEDSVEIVIEKLLHVT 911 (1049)
Q Consensus 835 eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~---~~~~~~~~e~lLp~Ll~~~ 911 (1049)
.|--|-+.+.+++..++..+. ..+-+++..|...|...|-.|...+|++|+.|.... +..+-+|...+||.+ +.+
T Consensus 130 yrf~A~~Gi~DLLl~~g~kil-pVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~-n~~ 207 (262)
T KOG3961|consen 130 YRFVARQGITDLLLAGGEKIL-PVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPFYRQLLPVL-NTF 207 (262)
T ss_pred cchhhhhcHHHHHHhcccccc-cccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhHHHHhhhhh-hhh
Confidence 445555666666665553322 245667788888888888889999999999988654 466889998877765 555
Q ss_pred CC------------CcHHHHHHHHHHHHHHHhhcCchhh--HHhhhh
Q 001582 912 KD------------AVPKVSNEAEHCLTVVLSQYDPFRC--LSVIVP 944 (1049)
Q Consensus 912 ~D------------s~~~Vr~aA~~~l~~i~~~~~p~~~--l~vL~p 944 (1049)
+. ....+-.-.++.|+.+...-.|..+ +++++|
T Consensus 208 k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~GGpnAfINIKY~vP 254 (262)
T KOG3961|consen 208 KNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSGGPNAFINIKYMVP 254 (262)
T ss_pred cccccccccccCccccccHHHHHHHHHHHHHHcCCccceeeEeeccC
Confidence 43 3455666677777777766666553 344444
No 318
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.16 E-value=2.3e+02 Score=35.38 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHH-------------HHHhhCCC-cHHH----HHHHHHHHHHHHHhc
Q 001582 436 WCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKL-------------FFQHLDDP-HHKV----AQAALSTLADIIPSC 497 (1049)
Q Consensus 436 WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~-------------l~~~l~Ds-n~kV----~~~aL~tL~~l~~~~ 497 (1049)
=+.-+.+++...+++.+..++-.+...++++|... +...|.|+ ++++ ....|..|.+++..|
T Consensus 378 l~~t~~ale~a~~ic~~~~~g~~~~~~el~~L~~~i~~PvVa~GVL~wi~~~l~~~~~~~~~~~~~p~~L~LLdeIa~~H 457 (584)
T PF04858_consen 378 LKSTKQALEKAHAICCNAARGSSELQAELPKLYSCIRYPVVAMGVLRWIESFLTDPSYFSSITELTPVHLALLDEIATRH 457 (584)
T ss_pred HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhCCChhhHHHHHHHHHHhcCcchhhhccccCchHHHHhhHHHhcC
Confidence 34567789999999886554422333456666441 12233454 3343 345788888999998
Q ss_pred CcchHHHHHHHHHHHHHHhcCCchh--hhHHHHHHHHHHHhhcCCcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhh
Q 001582 498 RKPFESYMERILPHVFSRLIDPKEL--VRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNK 573 (1049)
Q Consensus 498 ~~~~~~~l~~lL~~ll~klgD~k~~--vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~ 573 (1049)
. .++..+..+|..+|+-.+|..+. ..+.-...|+.+..-+....+++.|..+-.......+-..++.|.+..+-+
T Consensus 458 p-~lr~~vl~lL~~~le~~~~~l~~l~~le~kr~ilD~~V~L~s~G~VlPVl~~i~~~~~~~~iD~SLiRyFv~eVLe 534 (584)
T PF04858_consen 458 P-LLRPSVLDLLVRLLESEGDELDILVQLELKRTILDRMVHLLSRGYVLPVLEYIRKCWARGDIDPSLIRYFVTEVLE 534 (584)
T ss_pred H-hhHHHHHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHhCCeeehHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 4 89999999999999988765553 334556788888888888888888854332222223444555555444444
No 319
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=39.15 E-value=1.4e+02 Score=31.43 Aligned_cols=75 Identities=23% Similarity=0.212 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHH
Q 001582 903 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLP 982 (1049)
Q Consensus 903 lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip 982 (1049)
.+|+++.++.=.....+..+...+..|. .++|..++..|.+.+. +..++..|++.| +..+.+++...||.++.
T Consensus 45 aL~~~L~sv~W~~~~e~~e~~~ll~~W~-~~~~~~aL~LL~~~~~--~~~Vr~yAV~~L----~~~~d~~l~~yLpQLVQ 117 (184)
T smart00145 45 ALPKFLLSVNWSDADEVAQALSLLKKWA-PLDPEDALELLSPKFP--DPFVRAYAVERL----ESASDEELLLYLLQLVQ 117 (184)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCC-CCCHHHHHHHhCccCC--CHHHHHHHHHHH----HhCCHHHHHHHHHHHHH
Confidence 5788887766555665666777788775 5788888888887665 456777777664 56778888778877766
Q ss_pred HH
Q 001582 983 AL 984 (1049)
Q Consensus 983 ~L 984 (1049)
+|
T Consensus 118 aL 119 (184)
T smart00145 118 AL 119 (184)
T ss_pred HH
Confidence 65
No 320
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=38.79 E-value=53 Score=33.89 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=52.2
Q ss_pred cccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCchhhhhcHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhChHH
Q 001582 35 VRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPER 114 (1049)
Q Consensus 35 ~rll~~i~~~~~~~Ks~~~R~~~~~~l~~~L~~w~~~~~le~~~~~le~~ikk~l~DA~~~vR~~aR~~fw~f~~~~P~~ 114 (1049)
+-+||.|...+ ++|...-...++++|..++..|.+. |...... ..=.-|+.-+..|=.+.+..||-.|.++++-.
T Consensus 68 ~~lLP~i~~LL-~Sk~E~~i~~aL~~L~~i~~~f~~~--I~~~~~~--~~~~~gVDl~~EeR~~kc~~c~~~L~~i~~~l 142 (164)
T PF13925_consen 68 VDLLPLIEELL-QSKYESYISVALEMLRSILKKFGPV--IRSNLSA--PSPSIGVDLSAEERMEKCQECYQQLRKIVQIL 142 (164)
T ss_pred HHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHh--cccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999 7999999999999999999999763 2211110 11122344444444457899999999888643
No 321
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=38.58 E-value=1.6e+02 Score=43.47 Aligned_cols=152 Identities=17% Similarity=0.171 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhh----h----hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh
Q 001582 860 NQILTAVLEVLDDADSSVREVALSLINEMLKNQKD----V----MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLS 931 (1049)
Q Consensus 860 ~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~----~----~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~ 931 (1049)
.-++++|.+.+...|..++..+..+|..|...... . -.+..+.+++++++++-|+.---+..+--.|..++.
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 34677888888888888888888888877754321 1 226688899999998877654455555555666665
Q ss_pred hcCchhhHHhhhh-------hhc---c--cchhHHHHHHHHHHHHHhhcCHH----HHH-hhhhhHHHHHHHHhcCCCHH
Q 001582 932 QYDPFRCLSVIVP-------LLV---T--EDEKTLVTCINCLTKLVGRLSQE----ELM-AQLPSFLPALFEAFGNQSAD 994 (1049)
Q Consensus 932 ~~~p~~~l~vL~p-------~l~---s--~~~~t~~~al~~L~~lie~~~~~----~l~-~~L~~iip~L~~~~~D~~se 994 (1049)
..+..-++.+... .+. + .+.+. ..|..++-.+...+-.+ +.. .....++-.++..+-|+++.
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~-~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~ 1141 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPL-DEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSD 1141 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence 5552222222222 221 1 11121 22333333333222212 221 23456777788999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 001582 995 VRKTVVFCLVDIYIMLGK 1012 (1049)
Q Consensus 995 VRKaAv~clv~l~~~lGe 1012 (1049)
||+.+..||-.+...-|-
T Consensus 1142 VR~~~~~~L~~i~~~s~~ 1159 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSGK 1159 (3550)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999988888763
No 322
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=38.39 E-value=1.8e+02 Score=36.32 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhhcCch----------------hhHHhhhhhhc----ccchhHHHHHHHHHHHHHhhcCHHHHHh
Q 001582 916 PKVSNEAEHCLTVVLSQYDPF----------------RCLSVIVPLLV----TEDEKTLVTCINCLTKLVGRLSQEELMA 975 (1049)
Q Consensus 916 ~~Vr~aA~~~l~~i~~~~~p~----------------~~l~vL~p~l~----s~~~~t~~~al~~L~~lie~~~~~~l~~ 975 (1049)
+.++..|--++..++..+-.. .+++.+...+. .++...++.+|+.|+.+=
T Consensus 449 ~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g---------- 518 (618)
T PF01347_consen 449 PYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG---------- 518 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT----------
T ss_pred hhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC----------
Confidence 566776766666666442111 23333333333 234455667777766531
Q ss_pred hhhhHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhh
Q 001582 976 QLPSFLPALFEAFGNQ---SADVRKTVVFCLVDIYIMLG 1011 (1049)
Q Consensus 976 ~L~~iip~L~~~~~D~---~seVRKaAv~clv~l~~~lG 1011 (1049)
++.+++.+...+.+. ...+|.+|+.+|-.+.....
T Consensus 519 -~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 519 -HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp --GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred -CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence 234445555555554 89999999999975543334
No 323
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=38.39 E-value=6.8e+02 Score=28.92 Aligned_cols=96 Identities=17% Similarity=0.287 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHHhcCchhHH-HHhhcCCH
Q 001582 556 SPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVL-NFILSLSV 634 (1049)
Q Consensus 556 ~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~h~~~~~~~-~~l~~L~~ 634 (1049)
+-+-+-+++.++.+.|..+ +.- + ...+-...-+.+.++|.-.+-|+.|..|++..- .+|..|+ ..|..||+
T Consensus 160 ~vedqrel~r~v~~al~~~--k~~---~-~s~kvmt~lLgtyt~dnas~AredA~rcV~~av--~dP~~F~fD~Ll~L~p 231 (378)
T KOG2753|consen 160 SVEDQRELLRAVHKALKDN--KSV---D-ESSKVMTELLGTYTEDNASEAREDAMRCVVEAV--KDPKIFLFDHLLTLPP 231 (378)
T ss_pred CHHHHHHHHHHHHHHHHhc--chh---h-hHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH--cCCceeccchhccCch
Confidence 4477788888888887653 110 0 122333333344455666889999999998864 3555443 55788888
Q ss_pred HHH---HHHHHHHhhhchhHHHHHHHHH
Q 001582 635 EEQ---NSLRRALKQYTPRIEVDLMNYL 659 (1049)
Q Consensus 635 ~~~---~~~~~aL~~~~p~~~~~l~~~l 659 (1049)
..| +.+-..|+-|..+.-.+...|.
T Consensus 232 V~qLE~d~i~qLL~IF~s~~L~aYveF~ 259 (378)
T KOG2753|consen 232 VKQLEGDLIHQLLKIFVSGKLDAYVEFV 259 (378)
T ss_pred HHHhccchHHHHHHHHHhcchHHHHHHH
Confidence 766 2233444444333333444443
No 324
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=38.25 E-value=6.2e+02 Score=34.95 Aligned_cols=187 Identities=16% Similarity=0.223 Sum_probs=107.2
Q ss_pred HHHHHhcCCCCCCChHHHHHHHH---------HHHHHHhcC-CCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001582 422 LSDALSEGLSPSSDWCARVSAFN---------YLRSLLQQG-PKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLA 491 (1049)
Q Consensus 422 l~e~l~~g~~~s~~WkeR~egL~---------~L~~ll~~~-~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~ 491 (1049)
+-+.|.++.+.=..|++-..+|. .|..++++. .+..++-.++|.++++....-+.-.+-.|+-..++-|.
T Consensus 812 li~~Lr~p~Lp~~ew~~~~s~~~~Rlp~~l~~~~~~~~~~~~s~~t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~ 891 (2196)
T KOG0368|consen 812 LIKVLRDPELPYLEWQEHISALANRLPPNLDKSLESLVAKSASRITQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLL 891 (2196)
T ss_pred HHHHhcCCCcChHHHHHHHHHHhccCChhHHHHHHHHHHHHhhhcccCcHHHHHHHHHHHhhccccccchhhhhhhhHHH
Confidence 44555554555666776655542 233333321 22233434566777777766666677889999999999
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHHhcCCchhh---hHHHHHHHHHHHhhcCCcchHHHHHHhhccCCCHHHHHHHHHHHH
Q 001582 492 DIIPSCRKPFESYMERILPHVFSRLIDPKELV---RQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAI 568 (1049)
Q Consensus 492 ~l~~~~~~~~~~~l~~lL~~ll~klgD~k~~v---R~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~ 568 (1049)
.|+..+....+.|...++-.||.+.-.--... -..-.+++..+++.+..| +.-+...+..+..-+.|-.++.-|.
T Consensus 892 ~l~~~y~~g~~~H~~~v~~~Lle~Yl~VEk~F~~~~~~~e~~i~~lr~~~~~d--~~kVv~~i~SHs~i~~KN~Lv~~ll 969 (2196)
T KOG0368|consen 892 KLVSRYSGGLEAHAKEVVHDLLEEYLEVEKLFNGRDSHYEDVILRLREENKKD--LKKVVDIILSHSQIKSKNKLVLALL 969 (2196)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhhhH--HHHHHHHHHcchhhhhhhHHHHHHH
Confidence 99999999999999999999987651100000 113356677778888777 3444444444433222222222222
Q ss_pred HHhhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHH
Q 001582 569 SSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIIS 615 (1049)
Q Consensus 569 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ 615 (1049)
..|. . .....+......|.++..|-.--+.+|--.|...|+.
T Consensus 970 ~~l~---~--~s~~~~~~f~~iL~~l~~L~~~~~~eVal~Ar~iLi~ 1011 (2196)
T KOG0368|consen 970 DQLK---P--PSSKVSDEFRDILRKLTELNHTNTSEVALKARQILIQ 1011 (2196)
T ss_pred HHhc---C--CCCCCCHHHHHHHHHHHhhccchHHHHHHHHHHHHHh
Confidence 2221 1 1122345566666666665544556666666666543
No 325
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=37.15 E-value=6.4e+02 Score=28.36 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHH
Q 001582 833 PTSKHGALQQLIK 845 (1049)
Q Consensus 833 ~~eR~~aL~~L~~ 845 (1049)
.++|..-+.+|..
T Consensus 34 ~~~~~~i~~~l~~ 46 (322)
T cd07920 34 PEEKELIFDEILP 46 (322)
T ss_pred HHHHHHHHHHHHH
Confidence 5566666666444
No 326
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=37.04 E-value=3.8e+02 Score=30.40 Aligned_cols=116 Identities=19% Similarity=0.279 Sum_probs=67.1
Q ss_pred CchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhccC--CCH--HHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhH
Q 001582 519 PKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ--RSP--KAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKL 594 (1049)
Q Consensus 519 ~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~--~~p--kvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 594 (1049)
..+.+|++ ||+.++.--+..++++...-|+.++ +|- +++.-.+-.+...|- .+...|.. .-+...++.|
T Consensus 210 s~~~~r~a---Al~sLr~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL---~N~~iFvd-PY~hqlmPSi 282 (450)
T COG5095 210 SDEQTRDA---ALESLRNDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLL---KNKYIFVD-PYLHQLMPSI 282 (450)
T ss_pred HHHHHHHH---HHHHhccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---cCCceeec-HHHHHHHHHH
Confidence 34445554 5566677788888899988888765 554 333333333333332 13333433 2345556666
Q ss_pred ccccCC-------CC---HHHHHHHHHHHHHHHHhcCchhHHHHhhcCCHHHHHHHHHHHhhhchhHHH-HHHHHHHh
Q 001582 595 TPLVHD-------KN---TKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEV-DLMNYLQS 661 (1049)
Q Consensus 595 ~~~~~D-------kn---~~VR~aA~~~L~~ly~h~~~~~~~~~l~~L~~~~~~~~~~aL~~~~p~~~~-~l~~~l~~ 661 (1049)
++|+-. ++ -.+|+-|..+|..+|..|+ ..| +.++|++.. .+..||++
T Consensus 283 lTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~------------~~Y--------ktLkPRvtrTllKafLD~ 340 (450)
T COG5095 283 LTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFS------------SSY--------KTLKPRVTRTLLKAFLDR 340 (450)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhh------------Hhh--------hhhchHHHHHHHHHHHhc
Confidence 665432 22 2499999999999887653 223 445666655 55567765
No 327
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=36.70 E-value=1.4e+02 Score=30.52 Aligned_cols=76 Identities=22% Similarity=0.242 Sum_probs=53.3
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHH
Q 001582 902 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFL 981 (1049)
Q Consensus 902 ~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~ii 981 (1049)
..+|+++..+.-....-+..+...+..+ ..++|..++..+.+.+. +..++..|++.| +..+.+++...||.++
T Consensus 39 ~~lp~~L~sv~w~~~~~~~e~~~lL~~W-~~~~~~~aL~LL~~~~~--~~~vr~yAv~~L----~~~~~~~l~~ylpQLV 111 (152)
T cd00864 39 KALPKLLKSVNWNDDEEVSELYQLLKWW-APLSPEDALELLSPKYP--DPVVRQYAVRVL----ESASDDELLLYLPQLV 111 (152)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHhcC-CCCCHHHHHHHcCCcCC--CHHHHHHHHHHH----HhCCHHHHHHHHHHHH
Confidence 4688888888766666667777777666 34678888888887654 356667777665 4567788877777665
Q ss_pred HHH
Q 001582 982 PAL 984 (1049)
Q Consensus 982 p~L 984 (1049)
.+|
T Consensus 112 QaL 114 (152)
T cd00864 112 QAL 114 (152)
T ss_pred HHH
Confidence 555
No 328
>PLN03205 ATR interacting protein; Provisional
Probab=36.64 E-value=2.7e+02 Score=32.63 Aligned_cols=145 Identities=12% Similarity=0.215 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhh---hhhH-----HHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHH
Q 001582 859 FNQILTAVLEVLDDADSSVREVALSLINEMLKNQK---DVME-----DSVEIVIEKLL-HVTKDAVPKVSNEAEHCLTVV 929 (1049)
Q Consensus 859 f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~---~~~~-----~~~e~lLp~Ll-~~~~Ds~~~Vr~aA~~~l~~i 929 (1049)
+..++..|+....-.+..++-.+|++|..++++.- .+|+ ++..+ +.... -+..+....|+-.|...++.|
T Consensus 321 lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsL-fElm~QiAv~~TEE~VrLEAvSIMnVI 399 (652)
T PLN03205 321 LKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSL-FELMNQIASIRTEEDVKLEALSIMNII 399 (652)
T ss_pred HHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHH-HHHHHHHHhccchhheeeehhhhhHHh
Confidence 55677788888887788888888888887776542 2343 33322 22222 244677788999999999999
Q ss_pred HhhcCch---------hhHHhhhhhhcccc-hhHHHHHHHHHHHHHhh----------cC-HHH------------HHhh
Q 001582 930 LSQYDPF---------RCLSVIVPLLVTED-EKTLVTCINCLTKLVGR----------LS-QEE------------LMAQ 976 (1049)
Q Consensus 930 ~~~~~p~---------~~l~vL~p~l~s~~-~~t~~~al~~L~~lie~----------~~-~~~------------l~~~ 976 (1049)
+-..++. -++.-+..+++... ......++++|-.|++- +. .+. ....
T Consensus 400 lmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~ 479 (652)
T PLN03205 400 VMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEA 479 (652)
T ss_pred hhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHH
Confidence 9777765 25666666665422 23344566555443310 00 000 1134
Q ss_pred hhhHHHHHHHHhc-----CCCHHHHHHHHHHHH
Q 001582 977 LPSFLPALFEAFG-----NQSADVRKTVVFCLV 1004 (1049)
Q Consensus 977 L~~iip~L~~~~~-----D~~seVRKaAv~clv 1004 (1049)
...|+.+|+.|+. -.+=+.||.|+--|.
T Consensus 480 fSsIlegLAeCiac~~~s~~dIeLck~aiimLA 512 (652)
T PLN03205 480 FGKIFEGLADCLTSPRKTSEDLELCRNVIMILA 512 (652)
T ss_pred HHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHH
Confidence 5678889998885 245678888876553
No 329
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=35.84 E-value=4.7e+02 Score=29.28 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 001582 860 NQILTAVLEVLDDAD--SSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVL 930 (1049)
Q Consensus 860 ~~lL~~Ll~~L~D~n--~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~ 930 (1049)
..-+..|...|.|.+ +.||-.|-.+|..+. .+- +++.+=...+|+.++|++..+.|++.+-
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~-------~~~---~~~~l~k~~~dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-------DPE---SLEILTKYIKDPCKEVRETCELAIKRLE 128 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc-------chh---hHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 334455556665544 335555544444433 121 2222223337999999999888887654
No 330
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.74 E-value=3.2e+02 Score=40.59 Aligned_cols=119 Identities=18% Similarity=0.330 Sum_probs=75.0
Q ss_pred HHhcCCCHH--HHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHHHHHHh--h
Q 001582 868 EVLDDADSS--VREVALSLINEMLKNQ--KDVMEDSVEIVIEKLLHVTKDAVP---------KVSNEAEHCLTVVLS--Q 932 (1049)
Q Consensus 868 ~~L~D~n~~--vr~~AL~~L~~L~~~~--~~~~~~~~e~lLp~Ll~~~~Ds~~---------~Vr~aA~~~l~~i~~--~ 932 (1049)
+.|.|.+.. .+..-+.-+...+++. ...+. |++.++|.+++.+.+..+ +.|..+.+.++.+.. +
T Consensus 12 ~~l~d~~~~~~~klk~~~E~~~~le~~~~~~~~~-~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~~e~ 90 (3550)
T KOG0889|consen 12 RRLVDVNLPIESKLKMLVEIRDFLENLFSPESYL-FLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPHNEV 90 (3550)
T ss_pred HHhccCCCchHHHHHHHHHHHHHHHHhcChHHHH-HHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcccHHH
Confidence 556665543 3333333333333332 23344 789999999998865433 445555555554432 2
Q ss_pred cCc--hhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHh
Q 001582 933 YDP--FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAF 988 (1049)
Q Consensus 933 ~~p--~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~ 988 (1049)
..| ..++.+++.+|..+|..--+-|++.++.+...+. ..+..++..++..+.+.+
T Consensus 91 ~~~~~~~~~~~~~~vl~~dNeen~~l~lkii~~l~r~f~-~~~~~~v~~fl~~V~~ly 147 (3550)
T KOG0889|consen 91 FKPFSQELLKVLMRVLTNDNEENAILCLKIITDLFRQFK-SLVEQHVQPFLDIVIDLY 147 (3550)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHH
Confidence 222 3588999999999988888899999999998774 555666666665555544
No 331
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=35.68 E-value=71 Score=33.64 Aligned_cols=75 Identities=27% Similarity=0.267 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHH
Q 001582 903 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLP 982 (1049)
Q Consensus 903 lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip 982 (1049)
.||+++.++.-.....+..+...+..|.. ++|..++..|.+-+.. ..++..|++.| +.++.+++...||.++.
T Consensus 46 aL~~~L~sv~w~~~~~~~~~~~ll~~W~~-~~p~~AL~LL~~~f~~--~~VR~yAv~~L----~~~~d~~l~~yLpQLVQ 118 (184)
T PF00613_consen 46 ALPKLLRSVDWWNPEEVSEAYQLLLQWPP-ISPEDALELLSPNFPD--PFVRQYAVRRL----ESLSDEELLFYLPQLVQ 118 (184)
T ss_dssp GHHHHHTTSTTTSHHHHHHHHHHHHTSHC-TTHHHHHHCTSTT-----HHHHHHHHHHH----CTS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCchhhHHHHHHHHHcCCC-CCHHHHHHHHHhhccH--HHHHHHHHHHH----HHcCchHHHHHHHHHHH
Confidence 57788887776666666777778877776 6888888888776543 55667777654 55677777666655544
Q ss_pred HH
Q 001582 983 AL 984 (1049)
Q Consensus 983 ~L 984 (1049)
+|
T Consensus 119 aL 120 (184)
T PF00613_consen 119 AL 120 (184)
T ss_dssp HG
T ss_pred Hh
Confidence 43
No 332
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=35.64 E-value=3.1e+02 Score=33.28 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcC
Q 001582 872 DADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD 934 (1049)
Q Consensus 872 D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~ 934 (1049)
|+=.-|+.+.+.++-.|+++.+..+.+ +|-.+|+++||...+|...|.-.|..+-...|
T Consensus 202 d~i~~Vk~qvv~~VydLL~a~peqe~n----Ll~L~INKlGDk~~kvsskasY~ilkLe~~hP 260 (821)
T COG5593 202 DPIQYVKKQVVRLVYDLLEARPEQEVN----LLHLFINKLGDKRDKVSSKASYVILKLELLHP 260 (821)
T ss_pred chHHHHHHHHHHHHHHHHhcChHHHHH----HHHHHHHhhccchhhhhhhhhHHHHHHHhcCC
Confidence 443458888899999999888776655 34556678899988898888877776654433
No 333
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=35.51 E-value=3.8e+02 Score=33.26 Aligned_cols=124 Identities=16% Similarity=0.200 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHHHHHH-hcCcc--h-HHHHHHHHHHHHHHhcCC-chhhhHHHHHHHHHHHhhcCCcchHHHHHHhhc-
Q 001582 479 HHKVAQAALSTLADIIP-SCRKP--F-ESYMERILPHVFSRLIDP-KELVRQPCSTTLDIVSKTYSVDSLLPALLRSLD- 552 (1049)
Q Consensus 479 n~kV~~~aL~tL~~l~~-~~~~~--~-~~~l~~lL~~ll~klgD~-k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~- 552 (1049)
+..+-..++-.++.++. .|... + ..-+..+++.|...|.+. ...-.......|.+++ ..+-...++.|..++.
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG-N~g~~~~i~~l~~~l~~ 488 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG-NAGHPSSIKVLEPYLEG 488 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh-ccCChhHHHHHHHhcCC
Confidence 33455566666666664 33221 1 111233444444433211 0111122333333333 4445556677777776
Q ss_pred cC-CCHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhHccccCC--CCHHHHHHHHHHHHH
Q 001582 553 EQ-RSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHD--KNTKLKEAAITCIIS 615 (1049)
Q Consensus 553 ~~-~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~D--kn~~VR~aA~~~L~~ 615 (1049)
+. .++.+|++++.=| ..++.. . +..++ ..+.+...| .++|||-+|..+|..
T Consensus 489 ~~~~~~~iR~~Av~Al-r~~a~~--~------p~~v~---~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 489 AEPLSTFIRLAAILAL-RNLAKR--D------PRKVQ---EVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred CCCCCHHHHHHHHHHH-HHHHHh--C------chHHH---HHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 32 4679999887655 344431 1 12233 334444454 678999987755543
No 334
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=35.39 E-value=9.8e+02 Score=31.23 Aligned_cols=88 Identities=18% Similarity=0.309 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 001582 835 SKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADS----SVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV 910 (1049)
Q Consensus 835 eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~----~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~ 910 (1049)
.++.|++ |.+..-.+..-+|. ++..++..+...|. -....|....+.+++.-| .++..+|.+|-.++-.
T Consensus 129 qQkaa~~-LyK~~pk~~yyfWs-----V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-k~~s~aE~~Lyl~iL~ 201 (932)
T KOG2053|consen 129 QQKAALQ-LYKNFPKRAYYFWS-----VISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-KIESEAEIILYLLILE 201 (932)
T ss_pred HHHHHHH-HHHhCCcccchHHH-----HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-ccchHHHHHHHHHHHH
Confidence 3444444 66666555555666 56677777766553 244556667777776554 7777788777666644
Q ss_pred hCCCcHHHHHHHHHHH-HHHHhhc
Q 001582 911 TKDAVPKVSNEAEHCL-TVVLSQY 933 (1049)
Q Consensus 911 ~~Ds~~~Vr~aA~~~l-~~i~~~~ 933 (1049)
.... ...|.+.+ ..++...
T Consensus 202 ~~~k----~~eal~~l~~~la~~l 221 (932)
T KOG2053|consen 202 LQGK----YQEALEFLAITLAEKL 221 (932)
T ss_pred hccc----HHHHHHHHHHHHHHhc
Confidence 4332 23333333 4555543
No 335
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=35.15 E-value=5e+02 Score=26.39 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001582 980 FLPALFEAFGNQSADVRKTVVFCLVDIY 1007 (1049)
Q Consensus 980 iip~L~~~~~D~~seVRKaAv~clv~l~ 1007 (1049)
.=|.|.+++.-+++.||..|...++.+|
T Consensus 120 ~~PiL~r~L~~~n~~Vr~na~~l~~~aF 147 (152)
T PF12422_consen 120 YEPILWRALQAANAKVRSNAAALFLDAF 147 (152)
T ss_pred HHHHHHHHHcCCCcchhccHHHHHHHHc
Confidence 4577899999999999999999998765
No 336
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.71 E-value=1.9e+02 Score=36.81 Aligned_cols=130 Identities=22% Similarity=0.298 Sum_probs=78.7
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHh---C--CCcHHHHHHHHHHHHHHHhhcC
Q 001582 864 TAVLEVLDDA-DSSVREVALSLINEMLKNQ---KDVMEDSVEIVIEKLLHVT---K--DAVPKVSNEAEHCLTVVLSQYD 934 (1049)
Q Consensus 864 ~~Ll~~L~D~-n~~vr~~AL~~L~~L~~~~---~~~~~~~~e~lLp~Ll~~~---~--Ds~~~Vr~aA~~~l~~i~~~~~ 934 (1049)
.+++..|.|. |..|+..+.+++..++.+- ...|.+|.+.+...++..+ + |.+-.|..-.-..+..+-.++.
T Consensus 529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~ 608 (978)
T KOG1993|consen 529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA 608 (978)
T ss_pred HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 3466677776 6778888899999988753 3568888776655555444 2 5555555554444555555554
Q ss_pred ch-hhHHhhhhhh-c-ccchhHHHHH-HHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHH
Q 001582 935 PF-RCLSVIVPLL-V-TEDEKTLVTC-INCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSAD 994 (1049)
Q Consensus 935 p~-~~l~vL~p~l-~-s~~~~t~~~a-l~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~se 994 (1049)
|. .++--+.|.+ . ++..+...++ +..|..++..+|...- ..-+-++|.+..+.+=.+++
T Consensus 609 P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~-~~~~fL~pVIel~~D~~sP~ 671 (978)
T KOG1993|consen 609 PYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSF-EFYPFLYPVIELSTDPSSPE 671 (978)
T ss_pred HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCc-cchHHHHHHHHHhcCCCCCc
Confidence 43 2333344444 2 3444544444 4777788877764432 33466677777777765554
No 337
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=34.33 E-value=1.8e+02 Score=39.15 Aligned_cols=85 Identities=18% Similarity=0.288 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHhcC
Q 001582 440 VSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKP-FESYMERILPHVFSRLID 518 (1049)
Q Consensus 440 ~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~-~~~~l~~lL~~ll~klgD 518 (1049)
.-|-..|.++|+.+. +|++....+.--++.+|+...+.+|.++...+... ++-| .||.-.|-++||
T Consensus 488 ~lgr~AL~nLL~~N~-----------dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~--~LL~L~Lfklg~ 554 (1120)
T PF14228_consen 488 SLGRRALKNLLEHNP-----------DLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFW--ELLNLVLFKLGD 554 (1120)
T ss_pred HHHHHHHHHHHHhhH-----------HHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHH--HhHHHHHHhhcC
Confidence 457788889998522 25555555555577899999999999999877643 4444 688888999999
Q ss_pred CchhhhHHHHHHHHHHHhh
Q 001582 519 PKELVRQPCSTTLDIVSKT 537 (1049)
Q Consensus 519 ~k~~vR~~a~~~L~~~~e~ 537 (1049)
.+..||.+|...|.++-+-
T Consensus 555 ~~~eIR~~A~qLL~~Le~R 573 (1120)
T PF14228_consen 555 ESSEIRSKAMQLLRALEER 573 (1120)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 9999999999999998743
No 338
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=34.05 E-value=5e+02 Score=30.54 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhhcC
Q 001582 879 EVALSLINEMLKNQ----KDVMEDSVEIVIEKLLHVT--KDAVPKVSNEAEHCLTVVLSQYD 934 (1049)
Q Consensus 879 ~~AL~~L~~L~~~~----~~~~~~~~e~lLp~Ll~~~--~Ds~~~Vr~aA~~~l~~i~~~~~ 934 (1049)
..+|.+|.++++.. .......++.++|.+++++ .|-...++.-|.+.++.|+..+.
T Consensus 229 ~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 229 ASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred HHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc
Confidence 34566777777662 2334566888899999876 34357899999999999998865
No 339
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=33.94 E-value=8.8e+02 Score=29.05 Aligned_cols=180 Identities=13% Similarity=0.108 Sum_probs=110.7
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCC--chhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhc-Ccc-hH-----H
Q 001582 433 SSDWCARVSAFNYLRSLLQQGPKG--IQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSC-RKP-FE-----S 503 (1049)
Q Consensus 433 s~~WkeR~egL~~L~~ll~~~~~~--~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~-~~~-~~-----~ 503 (1049)
+..|..|..+|..+...+-..+-. ......+++.=++.+.+-+.|--.-++|.-++.+..|+..+ +++ |. .
T Consensus 404 cktppdqedallaaikkfgeePiakikedhfenlkagieeiReaIddisaekfqasfelikciiahlikehkfskledah 483 (666)
T KOG4825|consen 404 CKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKEHKFSKLEDAH 483 (666)
T ss_pred hcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhhHHH
Confidence 578999999999988887654421 11112345555566667778888889999999999888655 222 22 2
Q ss_pred HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHH---hhcCCcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCC
Q 001582 504 YMERILPHVFSRLIDPKELVRQPCSTTLDIVS---KTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEG 580 (1049)
Q Consensus 504 ~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~---e~~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~ 580 (1049)
.+..-++.++-.-||.-.-+|.-|...++.++ ++-....+-..|..+++..+.|-.-..--.-|+..+.....|..+
T Consensus 484 clehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLarllkdlgkGrag 563 (666)
T KOG4825|consen 484 CLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLARLLKDLGKGRAG 563 (666)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHHHHHHhcCCCccc
Confidence 33444556666668988889988888877776 444455555666666666566633222222233333332233332
Q ss_pred CCChhhHHHHHHhHccc--cCCCCHHHHHHHHHHHHHHHH
Q 001582 581 SGNLGILKLWLAKLTPL--VHDKNTKLKEAAITCIISVYT 618 (1049)
Q Consensus 581 ~~~~~~~~~~l~~l~~~--~~Dkn~~VR~aA~~~L~~ly~ 618 (1049)
| +.. +.+.+.. ..-.--|+|.+|...+..+|+
T Consensus 564 f-----ied-iakkfgVpaeehglndkreaafaiicdmtr 597 (666)
T KOG4825|consen 564 F-----IED-IAKKFGVPAEEHGLNDKREAAFAIICDMTR 597 (666)
T ss_pred h-----hHH-HHHHhCCCccccchhHHHHhHhhhhhhhcc
Confidence 2 222 3333332 333667999999999998886
No 340
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=33.51 E-value=7.3e+02 Score=27.85 Aligned_cols=89 Identities=18% Similarity=0.244 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcc--cchhHHHHHHHHHHHHHhhcCHHHHHhhhh
Q 001582 901 EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVT--EDEKTLVTCINCLTKLVGRLSQEELMAQLP 978 (1049)
Q Consensus 901 e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s--~~~~t~~~al~~L~~lie~~~~~~l~~~L~ 978 (1049)
+.-+..|++.+++..+-.+..+--++-++-.- ..++.|...|.. ...=.|.+|.+.|+.+. .+.
T Consensus 186 EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~----~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa----~e~------ 251 (289)
T KOG0567|consen 186 EEAINALIDGLADDSALFRHEVAFVFGQLQSP----AAIPSLIKVLLDETEHPMVRHEAAEALGAIA----DED------ 251 (289)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhccch----hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc----CHH------
Confidence 34566666666666566666665555544432 223333333322 22335566666665433 222
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001582 979 SFLPALFEAFGNQSADVRKTVVFCLV 1004 (1049)
Q Consensus 979 ~iip~L~~~~~D~~seVRKaAv~clv 1004 (1049)
.++.|.+..+|.++-||+.+..+|-
T Consensus 252 -~~~vL~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 252 -CVEVLKEYLGDEERVVRESCEVALD 276 (289)
T ss_pred -HHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 2356788889999999998888774
No 341
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=33.51 E-value=82 Score=24.08 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 001582 903 VIEKLLHVTKDAVPKVSNEAEHCLTVVL 930 (1049)
Q Consensus 903 lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~ 930 (1049)
.+|.|++.+.+....|++.|-.++..|+
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 7899999999999999999999988775
No 342
>KOG1810 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=33.20 E-value=6.7e+02 Score=33.95 Aligned_cols=176 Identities=12% Similarity=0.134 Sum_probs=105.4
Q ss_pred cchHHhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001582 853 SIWTKYFNQILTAVLEVLD---DADSSVREVALSLINEMLKNQ--KDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLT 927 (1049)
Q Consensus 853 ~~w~~~f~~lL~~Ll~~L~---D~n~~vr~~AL~~L~~L~~~~--~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~ 927 (1049)
....++|..|+......+. +.-..-+..|++++..|+..- ...--.|.+..|-.-|+.+.+.-=.+|+.|.-...
T Consensus 775 ~ll~r~~~~Ll~ia~~p~~~~~~~~~~p~VHA~NvmkaIf~~~~LS~~~sef~s~Al~lAi~~fs~~~W~~RN~atlLfa 854 (1417)
T KOG1810|consen 775 ELLPRCFCKLLKIAECPLPGEWGEGDEPRVHAMNVMKAIFTSSILSNERSEFQSRALRLAIEGFSHDMWAERNSATLLFA 854 (1417)
T ss_pred hhhHHHHHHHHHHhcCCCccccCCCcchhhhhHHHHHHHHccchhhHHHHHHHHHHHHHHHHhcCchHHhhhhhHHHHHH
Confidence 3355566666665544332 222335678899999999743 34445666666777777776655677777776665
Q ss_pred HHHhh----cCch-------------------hhHHhhhhhhcc------cc---hhHHHHHHHHHHHHHhhcCHHHHHh
Q 001582 928 VVLSQ----YDPF-------------------RCLSVIVPLLVT------ED---EKTLVTCINCLTKLVGRLSQEELMA 975 (1049)
Q Consensus 928 ~i~~~----~~p~-------------------~~l~vL~p~l~s------~~---~~t~~~al~~L~~lie~~~~~~l~~ 975 (1049)
++... ..+. .+.+++...+.+ ++ .-..+.++-+|..+-..-.... ..
T Consensus 855 ALi~RvfGv~~s~~~~~~r~~~S~~~FFtkyp~L~~~ll~~Less~a~~sgs~q~s~aL~piLl~LSrL~~~~~~~~-~~ 933 (1417)
T KOG1810|consen 855 ALINRVFGVIRSRLCLDHRNRLSGLEFFTKYPTLHPLLLTELESSDAQLSGSEQSSLALWPILLMLSRLYPSAPRSA-TL 933 (1417)
T ss_pred HHHHHHHHhhhHHhhcccccccchhhhhhcCccHHHHHHHHhhhhccCCCcccCccccHHHHHHHHHhhcccCCccc-cC
Confidence 55422 1111 122222222221 00 1123445555555544333333 23
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChh--hHHHH
Q 001582 976 QLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNST--QLRLV 1029 (1049)
Q Consensus 976 ~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l~~L~~s--~~kLL 1029 (1049)
-+..++|-+.+|....+-.||.-|--.++.+-..+-+++...++....+ +++.|
T Consensus 934 ~ls~F~p~l~ect~q~~~~vRemAs~vl~~L~~~~~e~l~~~~dl~~~q~~~qN~l 989 (1417)
T KOG1810|consen 934 GLSVFVPFLQECTCQSNLKVREMASLVLLALVDAVLEDLRQVLDLKAPQGRLQNLL 989 (1417)
T ss_pred CchhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHH
Confidence 5678999999999998899999999888888888777777666665555 44443
No 343
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.87 E-value=1.3e+02 Score=39.43 Aligned_cols=91 Identities=19% Similarity=0.255 Sum_probs=68.9
Q ss_pred hCCCcccHHHHHHHhhhc-CCHHHHHHHHHHHHHHHhhcCCchhhhhcHHHHHHHHHHhccCCChHHHHHHHHHHHHHHh
Q 001582 31 NCKAVRVLPRIADCAKND-RNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAK 109 (1049)
Q Consensus 31 ~~~~~rll~~i~~~~~~~-Ks~~~R~~~~~~l~~~L~~w~~~~~le~~~~~le~~ikk~l~DA~~~vR~~aR~~fw~f~~ 109 (1049)
.|-...+|.+-++.+ +| .-+-+|.-+|.+|-.+-+.+..+ -+...-+.--+-+-..|.|.-||||..|==|+-.|-+
T Consensus 594 acl~~~li~iCle~l-nd~~~pLLrQW~~icLG~LW~d~~~A-rw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 594 ACLNGNLIGICLEHL-NDDPEPLLRQWLCICLGRLWEDYDEA-RWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred HhccccHHHHHHHHh-cCCccHHHHHHHHHHHHHHhhhcchh-hhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 355567888777777 66 46889999998888887776654 3433334444445678999999999999999999998
Q ss_pred h----ChHHHHHHHhcCC
Q 001582 110 T----WPERSRRLFSSFD 123 (1049)
Q Consensus 110 ~----~P~~a~~l~~~Ld 123 (1049)
. |+++.+.+-.-++
T Consensus 672 ~~~d~fde~~~~~~~~~~ 689 (1387)
T KOG1517|consen 672 NGSDNFDEQTLVVEEEID 689 (1387)
T ss_pred ccccccchhhhhhhhhhc
Confidence 7 8999988866666
No 344
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=32.69 E-value=1e+03 Score=33.19 Aligned_cols=101 Identities=15% Similarity=0.348 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCch---hhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHH
Q 001582 896 MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF---RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEE 972 (1049)
Q Consensus 896 ~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~---~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~ 972 (1049)
+..|+..++--.=.++..+...|+.-+-.+...+...++.. .++..|+..+-+++....-.|+++|..|++.+ ++.
T Consensus 429 L~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~-~~~ 507 (1426)
T PF14631_consen 429 LKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKN-PSE 507 (1426)
T ss_dssp HTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcc-HHH
Confidence 34444433322223456778899999999999999888753 47777777776676666668899999999765 455
Q ss_pred HHhhhhhHHHHHHHHhcC-CCHHHHHH
Q 001582 973 LMAQLPSFLPALFEAFGN-QSADVRKT 998 (1049)
Q Consensus 973 l~~~L~~iip~L~~~~~D-~~seVRKa 998 (1049)
+.+ ...++-++...+++ ....||+.
T Consensus 508 l~~-fa~~l~giLD~l~~Ls~~qiR~l 533 (1426)
T PF14631_consen 508 LQP-FATFLKGILDYLDNLSLQQIRKL 533 (1426)
T ss_dssp HHH-THHHHHGGGGGGGG--HHHHHHH
T ss_pred HHH-HHHHHHHHHHHHhcCCHHHHHHH
Confidence 533 35666777788877 56778876
No 345
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=32.53 E-value=8.4e+02 Score=28.86 Aligned_cols=156 Identities=15% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHHHhcC------CccchHHhH-------HHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001582 820 QILHLMCNGNDGSPTSKHGALQQLIKASVAN------DHSIWTKYF-------NQILTAVLEVLDDADSSVREVALSLIN 886 (1049)
Q Consensus 820 ~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~------~~~~w~~~f-------~~lL~~Ll~~L~D~n~~vr~~AL~~L~ 886 (1049)
+....|++..++ . +-++..+.|.+.++.+ ...+++..| +..+++-++.++|.+..||.+|.+-|-
T Consensus 9 ~~~e~l~~a~dk-~-q~v~~y~~il~~~k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp 86 (460)
T KOG2213|consen 9 EFYEILSEATDK-S-QHVDDYEGILKAVKGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLP 86 (460)
T ss_pred HHHHHHHhhchh-h-hhHHHHHHHHHHhhcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccc
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHh
Q 001582 887 EMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVG 966 (1049)
Q Consensus 887 ~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie 966 (1049)
.+|+. .+-.-...+|.+||+ ..-+.-|...+...+..++--|++++..=+-
T Consensus 87 ~fc~~---d~~~rv~d~l~qLLn--------------------------k~sl~~Lf~~~~~~D~~irek~l~fi~tKl~ 137 (460)
T KOG2213|consen 87 LFCKG---DALSRVNDVLVQLLN--------------------------KASLTGLFGQIEVGDEQIREKVLKFIRTKLI 137 (460)
T ss_pred hhccC---chhhhhHHHHHHHHH--------------------------HHHHHHHHhhhhhhhHHHHHHHHHHHHHHhh
Q ss_pred hcCHHHHHhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001582 967 RLSQEELMAQL-PSFLPALFEAFGNQSADVRKTVVFCLVDI 1006 (1049)
Q Consensus 967 ~~~~~~l~~~L-~~iip~L~~~~~D~~seVRKaAv~clv~l 1006 (1049)
-++.+.|..-+ ..|+..+.+.+.|-..+==....+-|..+
T Consensus 138 ~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~l 178 (460)
T KOG2213|consen 138 TLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASL 178 (460)
T ss_pred cccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
No 346
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.29 E-value=3.4e+02 Score=37.31 Aligned_cols=92 Identities=12% Similarity=0.083 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhHHhhhhhhc-----ccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcC
Q 001582 916 PKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV-----TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 990 (1049)
Q Consensus 916 ~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~-----s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D 990 (1049)
+.....|..|...+...+.-..+.+.+...++ +..|..+...++++..++=...--....+.++|-..+...++|
T Consensus 1501 d~a~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D 1580 (1710)
T KOG1851|consen 1501 DLAKNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLND 1580 (1710)
T ss_pred hHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcc
Confidence 45566666677766666544443333333333 3579999999999887763221113345667888889999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 001582 991 QSADVRKTVVFCLVDIY 1007 (1049)
Q Consensus 991 ~~seVRKaAv~clv~l~ 1007 (1049)
.+-+||+-|..|+..+.
T Consensus 1581 ~~i~vre~Aa~~Lsgl~ 1597 (1710)
T KOG1851|consen 1581 DQIEVREEAAKCLSGLL 1597 (1710)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999999997664
No 347
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=32.19 E-value=1.1e+03 Score=29.31 Aligned_cols=101 Identities=13% Similarity=0.192 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCCccchHHhHHHHHHHHHH------------HhcC--CCHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 001582 836 KHGALQQLIKASVANDHSIWTKYFNQILTAVLE------------VLDD--ADSSVREVALSLINEMLKNQKDVMEDSVE 901 (1049)
Q Consensus 836 R~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~------------~L~D--~n~~vr~~AL~~L~~L~~~~~~~~~~~~e 901 (1049)
+.+.-.++++++.++..+. +.|+.+|..+.. |++. +....++.-+..|..-+++.+..| |+.
T Consensus 85 ~~~~~~~~~k~l~~~~l~~--~~~~~~l~~~~~~c~kd~is~~k~w~f~~~~s~~~~e~~~~~l~n~~~~~~~~~--~lr 160 (757)
T KOG4368|consen 85 AHAVEQQMQKLLEETQLDM--NEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHF--ELR 160 (757)
T ss_pred HHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHHhHHHHHHhhhhhhhcCCCchHHHHHHHHHHhhhcccccch--hhh
Confidence 3444455666776665543 235555555443 3322 223344444444444333333333 233
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhh
Q 001582 902 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVI 942 (1049)
Q Consensus 902 ~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL 942 (1049)
+-|..||+-.-. ---++.+++.++.+..++-|..|+.++
T Consensus 161 lh~~ylind~~~--hcqrk~~~~~~~~l~~~v~~~yc~~~~ 199 (757)
T KOG4368|consen 161 LHLIYLINDVLH--HCQRKQARELLAALQKVVVPIYCTSFL 199 (757)
T ss_pred hhhHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 333344431111 112455667777777666555554443
No 348
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=32.18 E-value=5.6e+02 Score=32.93 Aligned_cols=124 Identities=12% Similarity=0.139 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhh---cCchh----hHHhhhhhh---cccchhHHHHH-H-HHHHHHHhhc
Q 001582 901 EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ---YDPFR----CLSVIVPLL---VTEDEKTLVTC-I-NCLTKLVGRL 968 (1049)
Q Consensus 901 e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~---~~p~~----~l~vL~p~l---~s~~~~t~~~a-l-~~L~~lie~~ 968 (1049)
..++|.++-.+-|..++++.=|+..+..+... +..+. +...+...+ ..+.+...... + .-+..+++.+
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i~~~~~~~~~~~~fW~g~~~Il~~l 198 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRISPNNYNPDSVIRFWSGFSLILRLL 198 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHc
Confidence 55678888877788889999999999987654 33222 233333222 12222211111 1 2334556667
Q ss_pred CHHHHHhhhhh-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChh
Q 001582 969 SQEELMAQLPS-----FLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNST 1024 (1049)
Q Consensus 969 ~~~~l~~~L~~-----iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l~~L~~s 1024 (1049)
+.+.+..++.. |+..++..+.+...++---...|+-.+...+|.+||-.++..++.
T Consensus 199 d~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~FW~~~~~~~p~ 259 (727)
T PF12726_consen 199 DKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDFWDAMGPISPQ 259 (727)
T ss_pred cHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHHhcccCCCCHH
Confidence 77777666544 566788888887677778889999999999999999988887776
No 349
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=32.07 E-value=16 Score=20.96 Aligned_cols=9 Identities=11% Similarity=0.615 Sum_probs=6.9
Q ss_pred HHHHHHHHH
Q 001582 100 ARMCYRMFA 108 (1049)
Q Consensus 100 aR~~fw~f~ 108 (1049)
.++|||.|.
T Consensus 3 ~~~CFWKYC 11 (12)
T PF02083_consen 3 KSECFWKYC 11 (12)
T ss_pred ccchhhhhc
Confidence 367999884
No 350
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=31.49 E-value=1.2e+03 Score=29.53 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHhcCCccchHHhH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHH
Q 001582 835 SKHGALQQLIKASVANDHSIWTKYF--NQILTAVLEVLDDADSSVREVALSLINEMLKNQK--DVMEDSVEIVIEKLLHV 910 (1049)
Q Consensus 835 eR~~aL~~L~~li~~~~~~~w~~~f--~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~--~~~~~~~e~lLp~Ll~~ 910 (1049)
....+|-.|-+++.+.+.-- .-| ...++.|...+.+.++++|..++.+|+.+.=+.. ..++.+.......|.+.
T Consensus 435 i~~~~lgai~NlVmefs~~k--skfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l 512 (678)
T KOG1293|consen 435 IMGITLGAICNLVMEFSNLK--SKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDL 512 (678)
T ss_pred HHHHHHHHHHHHHhhcccHH--HHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHH
Confidence 55667777777776654311 111 2245667788899999999999999999775443 34567777777888888
Q ss_pred hCCCcHHHHHHHHHHHHHHHh
Q 001582 911 TKDAVPKVSNEAEHCLTVVLS 931 (1049)
Q Consensus 911 ~~Ds~~~Vr~aA~~~l~~i~~ 931 (1049)
+.|+...|.+.+-+.++.+..
T Consensus 513 ~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 513 INDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HhCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999988774
No 351
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.18 E-value=2.6e+02 Score=36.14 Aligned_cols=73 Identities=16% Similarity=0.319 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh--cCCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhh
Q 001582 479 HHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRL--IDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSL 551 (1049)
Q Consensus 479 n~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~~ll~kl--gD~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l 551 (1049)
|.|-...+..+|..|...|+.++.+|+..++..+=.-+ +-.|.+.|.+..+++..+.....++.+...|++.+
T Consensus 560 ~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~li 634 (982)
T KOG2022|consen 560 NSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLI 634 (982)
T ss_pred CchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHH
Confidence 55566677788999999999899888887776654444 67899999999999998887777777777777654
No 352
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=30.18 E-value=4.9e+02 Score=25.13 Aligned_cols=88 Identities=14% Similarity=0.164 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHHHHHHHhcCc---chHHHHHHHHHHHHHHhc--CCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhcc
Q 001582 479 HHKVAQAALSTLADIIPSCRK---PFESYMERILPHVFSRLI--DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDE 553 (1049)
Q Consensus 479 n~kV~~~aL~tL~~l~~~~~~---~~~~~l~~lL~~ll~klg--D~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~ 553 (1049)
|..-+..+|.++..||..... ++..+...|+..|+.-=. |..+ .-+.-.+||-++.-. .|..+.+.|.+.+..
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~-Fe~~R~~alval~v~-~P~~~~~~L~~~f~~ 95 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIEN-FEELRQNALVALVVA-APEKVAPYLTEEFFS 95 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TT-TTHHHHHHHHHHHHH-SGGGHHH-HHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccC-HHHHHHHHHHHHHHH-hhHHHHHHHHHHHhc
Confidence 566788999999999977665 899999988888776442 2222 233444444444433 355566777776654
Q ss_pred C-CCHHHHHHHHHHHH
Q 001582 554 Q-RSPKAKLAVIEFAI 568 (1049)
Q Consensus 554 ~-~~pkvk~~~L~~l~ 568 (1049)
. -+-..|..+|.-|.
T Consensus 96 ~~~Sl~qR~~iL~~l~ 111 (114)
T PF10193_consen 96 GDYSLQQRMSILSALS 111 (114)
T ss_dssp S---THHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 3 46688888887664
No 353
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=30.06 E-value=8.3e+02 Score=29.74 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=89.8
Q ss_pred HHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcc----hHHHHHHHHHHHHHHhcCCc
Q 001582 445 YLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKP----FESYMERILPHVFSRLIDPK 520 (1049)
Q Consensus 445 ~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~----~~~~l~~lL~~ll~klgD~k 520 (1049)
.||-++...+... +.+|.+..+.++..-+.+|. +|.++=.+.++-..+ +.-|...+||-|= .|
T Consensus 6 ~LQ~i~~~~P~i~---~~nL~k~~~lr~s~qnr~~~-----~LsilWaigQag~~DL~vGLkvW~~~mLP~l~-----~K 72 (469)
T PF10151_consen 6 CLQAIAQSKPDIC---TNNLPKYAELRNSYQNRPNI-----CLSILWAIGQAGQGDLSVGLKVWQHLMLPVLE-----LK 72 (469)
T ss_pred HHHHHHccCcHHH---HHhHHHHHHHHHhhhcCCch-----hHHHHHHHhcccccchHHHHHHHHHhhhhhcc-----CC
Confidence 4666776666522 36899999988888888875 556666666665544 5689999999873 33
Q ss_pred hhhhHHHHHHHHHHHhhcC---------CcchHHHHHHhhccCCCHHHHH--HHHHHHHHHhhhhccCCCCCCChhhHHH
Q 001582 521 ELVRQPCSTTLDIVSKTYS---------VDSLLPALLRSLDEQRSPKAKL--AVIEFAISSLNKHAMNSEGSGNLGILKL 589 (1049)
Q Consensus 521 ~~vR~~a~~~L~~~~e~~~---------~d~~l~~L~r~l~~~~~pkvk~--~~L~~l~~~l~~~~~~~~~~~~~~~~~~ 589 (1049)
. ...-+..-|+.+....+ +...|-.++++..-..|...|. +=++=+.-.|.+....+. + .+.+..
T Consensus 73 ~-~s~~vi~yleriL~~~~~~~~g~~li~p~~F~~ll~~~f~~~~~~~k~l~e~l~~~yp~LK~la~~~~-p--~s~~~~ 148 (469)
T PF10151_consen 73 S-YSPYVIQYLERILSLHGNVTKGERLIPPQEFFPLLRLTFPPSNSLSKALQERLEAIYPRLKELAFAGK-P--GSTLHT 148 (469)
T ss_pred C-cchHHHHHHHHHHhcCcccccCcCCCCHHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHhcCC-c--hhHHHH
Confidence 2 34455556666552211 3334666677766544433332 222223333433222221 1 123444
Q ss_pred HHHhHccccC-CCCHHHHHHHHHHHHHHH
Q 001582 590 WLAKLTPLVH-DKNTKLKEAAITCIISVY 617 (1049)
Q Consensus 590 ~l~~l~~~~~-Dkn~~VR~aA~~~L~~ly 617 (1049)
.+..+...+. +.+.+.++-+..+++.-.
T Consensus 149 ~f~~~l~~~~~~~~~~~~~E~~~~li~CL 177 (469)
T PF10151_consen 149 YFPSFLSKATPECPPELKKELISILIWCL 177 (469)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHh
Confidence 5555555444 577889999988887643
No 354
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=30.00 E-value=4.3e+02 Score=25.98 Aligned_cols=94 Identities=16% Similarity=0.276 Sum_probs=60.6
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Q 001582 433 SSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDP--HHKVAQAALSTLADIIPSCRKPFESYMERILP 510 (1049)
Q Consensus 433 s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Ds--n~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~ 510 (1049)
+.+|--=-.-+..|..+-.+. ..+.++++.+-++|.|. |-+.+-.+|..|-.|+..-.+.|-.|+..-+.
T Consensus 12 ~d~wGp~~~~m~eIa~~t~~~--------~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~ 83 (123)
T cd03571 12 NDPWGPSGTLMAEIARATYNY--------VEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARENLY 83 (123)
T ss_pred CCCCCCCHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHH
Confidence 344555555555555444321 36789999999999998 77789999999988887766666666554432
Q ss_pred HHHHHh-----cCCc-----hhhhHHHHHHHHHHH
Q 001582 511 HVFSRL-----IDPK-----ELVRQPCSTTLDIVS 535 (1049)
Q Consensus 511 ~ll~kl-----gD~k-----~~vR~~a~~~L~~~~ 535 (1049)
+++.| .|.+ -.||.+|...++.+.
T Consensus 84 -~i~~L~~F~~~d~~g~d~G~~VR~ka~~i~~Ll~ 117 (123)
T cd03571 84 -IIRTLKDFQYIDENGKDQGINVREKAKEILELLE 117 (123)
T ss_pred -HHHhhccceeeCCCCCchhHHHHHHHHHHHHHhC
Confidence 22222 2322 467777777766554
No 355
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=29.95 E-value=6.3e+02 Score=26.32 Aligned_cols=78 Identities=22% Similarity=0.214 Sum_probs=55.6
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHH
Q 001582 902 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFL 981 (1049)
Q Consensus 902 ~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~ii 981 (1049)
..+|+++.++.-...+-+..+...+..|. .++|..++..|.+.+. +..+|..|+++|. ..+.+++...|+.++
T Consensus 39 ~aL~~~l~sv~w~~~~~v~e~~~lL~~W~-~i~~~~aLeLL~~~f~--d~~VR~yAV~~L~----~~sd~eL~~yL~QLV 111 (171)
T cd00872 39 QALPKLLLSVKWNKRDDVAQMYQLLKRWP-KLKPEQALELLDCNFP--DEHVREFAVRCLE----KLSDDELLQYLLQLV 111 (171)
T ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHCCC-CCCHHHHHHHCCCcCC--CHHHHHHHHHHHH----hCCHHHHHHHHHHHH
Confidence 46888888887666666667777777774 4678888888877664 3567788887754 466788877787776
Q ss_pred HHHHH
Q 001582 982 PALFE 986 (1049)
Q Consensus 982 p~L~~ 986 (1049)
.+|.-
T Consensus 112 QaLKy 116 (171)
T cd00872 112 QVLKY 116 (171)
T ss_pred HHHHc
Confidence 66544
No 356
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=29.53 E-value=1.3e+02 Score=35.70 Aligned_cols=75 Identities=12% Similarity=0.178 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHHHhhcCCchhhhhcHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhChHHHHHHHhcCCHH
Q 001582 50 NAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPA 125 (1049)
Q Consensus 50 s~~~R~~~~~~l~~~L~~w~~~~~le~~~~~le~~ikk~l~DA~~~vR~~aR~~fw~f~~~~P~~a~~l~~~Ld~~ 125 (1049)
....|..|.-||.-++..|... ..++.++.+-+.|++---..+-+.|+.+++++......=-+.+|.+|+-+|.-
T Consensus 20 G~l~R~~~ik~L~e~~~~~~~~-er~~~i~~i~e~iq~q~l~s~~~~r~~~~~avq~~~~sg~~~~e~~F~vidAf 94 (525)
T KOG3818|consen 20 GHLWRSEAIKLLVELALDWKKE-ERKKWINKIIELIQKQKLNSPHEEREAIEAAVQECSSSGTQDAEKYFNVIDAF 94 (525)
T ss_pred hHHHHHhHHHHHHHHHhhhHHH-HhhhhHHHHHHHHHhhccCCchhhHHHHHHHHHHhhhcccccHHHHHhhcchh
Confidence 4678888999999999999875 66778999999999999999999999999999999999999999999888854
No 357
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=29.50 E-value=7.8e+02 Score=26.92 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=29.2
Q ss_pred hcCCCHHHHHHHHHHHHHHHHh----h------hhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhh
Q 001582 870 LDDADSSVREVALSLINEMLKN----Q------KDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ 932 (1049)
Q Consensus 870 L~D~n~~vr~~AL~~L~~L~~~----~------~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~ 932 (1049)
|.|.++.|...+..+...+... . ...|+. +..+=-.++....+..+-|+-.+...+..++-.
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~-~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~ 73 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWES-MNELKDRILSLWDSENPGVKLAAIKFLERVILV 73 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHH-HHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH-HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 4666776666665554443321 1 011211 222334444445555556666666666655544
No 358
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.35 E-value=8.4e+02 Score=28.36 Aligned_cols=142 Identities=18% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCHH-HHHHH---HHHHHHHHHhhhhh---hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCc
Q 001582 863 LTAVLEVLDDADSS-VREVA---LSLINEMLKNQKDV---MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP 935 (1049)
Q Consensus 863 L~~Ll~~L~D~n~~-vr~~A---L~~L~~L~~~~~~~---~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p 935 (1049)
|..|+..+.|.|.. +|+.+ |.+|+.|..+-..+ .+.-.-..|-.++..+.|. +.|.+++..|+..++-..|-
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~-p~Vi~~~~a~i~~l~LR~pd 363 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDD-PLVIQEVMAIISILCLRSPD 363 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCC-hHHHHHHHHHHHHHHhcCcc
Q ss_pred hh-------hHHhhhhhhcc--cchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001582 936 FR-------CLSVIVPLLVT--EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1006 (1049)
Q Consensus 936 ~~-------~l~vL~p~l~s--~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l 1006 (1049)
.. .-.+....++. .....-.-+..++..++ ..+.+.....|.-=++.|+...--....++.+|-.+|-.+
T Consensus 364 hsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv-~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 364 HSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIV-VRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred hHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHH-HhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
No 359
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=29.31 E-value=4e+02 Score=29.77 Aligned_cols=128 Identities=17% Similarity=0.189 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHHHH---hhhh-hhHHH--HHHHHHHHHHHhCC--C------cHHHHHHHHHHHHHHHhhcCch---
Q 001582 874 DSSVREVALSLINEMLK---NQKD-VMEDS--VEIVIEKLLHVTKD--A------VPKVSNEAEHCLTVVLSQYDPF--- 936 (1049)
Q Consensus 874 n~~vr~~AL~~L~~L~~---~~~~-~~~~~--~e~lLp~Ll~~~~D--s------~~~Vr~aA~~~l~~i~~~~~p~--- 936 (1049)
++..|+.||.-|.+--+ +++. .|..| ...+|..++..+.. + ...-+..|-+.+..++. ||+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs--hpetr~ 85 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS--HPETRM 85 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH---TTTHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc--ChHHHH
Confidence 45667777666654322 2221 13322 44566666665531 1 12334445555566665 454
Q ss_pred -----hhHHhhhhhhccc--c---hhHHHHHHHHHHHHHhhcCHHHHHhhh-hhHHHHHHHHhcCCCHHHHHHHHHHH
Q 001582 937 -----RCLSVIVPLLVTE--D---EKTLVTCINCLTKLVGRLSQEELMAQL-PSFLPALFEAFGNQSADVRKTVVFCL 1003 (1049)
Q Consensus 937 -----~~l~vL~p~l~s~--~---~~t~~~al~~L~~lie~~~~~~l~~~L-~~iip~L~~~~~D~~seVRKaAv~cl 1003 (1049)
.+.-+|.|++.+. . .--|+.++..++.+++.-.++.+.-.+ .+++|-..+.|+..+.--+..|.|-+
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIl 163 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFIL 163 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHH
Confidence 3556778888642 2 235678889999999876667664444 58999999999877555555566665
No 360
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=29.21 E-value=1.7e+02 Score=30.38 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHH
Q 001582 902 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFL 981 (1049)
Q Consensus 902 ~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~ii 981 (1049)
..||+++....+-...-+..+...++.|. -++|...+..+.+.+.. ..++..|+++|. .++.+++...|+.++
T Consensus 39 ~aLp~~L~s~~~w~~~~~~e~~~LL~~W~-p~~p~~ALeLL~~~f~d--~~VR~yAV~~L~----~~~ddeL~~yLpQLV 111 (169)
T cd00869 39 NALPLVLASAPSWDWANLMDVYQLLHQWA-PLRPLIALELLLPKFPD--QEVRAHAVQWLA----RLSNDELLDYLPQLV 111 (169)
T ss_pred HHHHHHHHhcccCcHHHHHHHHHHHhCCC-CCCHHHHHHHcCCcCCC--hHHHHHHHHHHH----hCCHHHHHHHHHHHH
Confidence 35888887664333333444566666664 46777888888887754 467778887654 566788877776655
Q ss_pred HHHH
Q 001582 982 PALF 985 (1049)
Q Consensus 982 p~L~ 985 (1049)
.+|.
T Consensus 112 QaLk 115 (169)
T cd00869 112 QALK 115 (169)
T ss_pred HHHH
Confidence 5443
No 361
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=28.87 E-value=9.7e+02 Score=33.47 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=90.5
Q ss_pred chHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhh
Q 001582 854 IWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS-VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ 932 (1049)
Q Consensus 854 ~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~-~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~ 932 (1049)
+..++|..+|...-..|..++..|+.-+......++... +.| -..+|..|+.-+++....=+.+|..++..++..
T Consensus 428 vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~f----ds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~ 503 (1426)
T PF14631_consen 428 VLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEF----DSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK 503 (1426)
T ss_dssp HHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc----cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence 345677777877777888899999999999999988754 333 234777787766555444446777777777754
Q ss_pred cCchh------hHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001582 933 YDPFR------CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1006 (1049)
Q Consensus 933 ~~p~~------~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D~~seVRKaAv~clv~l 1006 (1049)
+|.. .+.-++..+..=........+.+|..+.=.-+. .....-.++.=.+-+.+.+.+...++-.+-..|.+
T Consensus 504 -~~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~-~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~ 581 (1426)
T PF14631_consen 504 -NPSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSS-SSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMM 581 (1426)
T ss_dssp --HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcc-cchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHH
Confidence 3432 233333333321222233335555544411111 11112244444578999999999999888888888
Q ss_pred HHHhhh
Q 001582 1007 YIMLGK 1012 (1049)
Q Consensus 1007 ~~~lGe 1012 (1049)
..+++.
T Consensus 582 i~~la~ 587 (1426)
T PF14631_consen 582 IKHLAA 587 (1426)
T ss_dssp HHHTT-
T ss_pred HHHHHH
Confidence 878874
No 362
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]
Probab=28.74 E-value=1.3e+03 Score=29.42 Aligned_cols=120 Identities=13% Similarity=0.191 Sum_probs=63.2
Q ss_pred hHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcC
Q 001582 855 WTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD 934 (1049)
Q Consensus 855 w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~ 934 (1049)
...+.+.+.-.+..-++. -+..-|.+|..-+..++.+.-.|+- |-.+++.- + -..+.+++..++..+
T Consensus 46 ~e~~l~~l~~~l~~~~~~----~~~~iL~~L~~ca~~lP~K~~~yaT--LvgllN~k-n-----~~fg~~~v~~~~~~~- 112 (759)
T KOG1104|consen 46 VEDNLENLVAVLEADLEN----FKSKILDILNTCAVYLPEKITAYAT--LVGLLNLK-N-----FNFGGEFVEYMIEEL- 112 (759)
T ss_pred HHHhHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHcccchhHHHH--HHHHHhcc-c-----hhhHHHHHHHHHHHH-
Confidence 344444444444443333 4555577777777677777766653 33333321 1 123344444444332
Q ss_pred chhhHHhhhhhhcccchhHHHHHHHHHHHHH--hhcCHHHHHhhhhhHHHHHHHHhcCCCHHHHHH
Q 001582 935 PFRCLSVIVPLLVTEDEKTLVTCINCLTKLV--GRLSQEELMAQLPSFLPALFEAFGNQSADVRKT 998 (1049)
Q Consensus 935 p~~~l~vL~p~l~s~~~~t~~~al~~L~~li--e~~~~~~l~~~L~~iip~L~~~~~D~~seVRKa 998 (1049)
-.-+.+.+|.....-+.+|..|. .-+.++.|...+..++.... ....+.||.-
T Consensus 113 --------q~sl~~~~~n~ar~llrfL~dL~~~~vl~~~sli~l~esl~~~~~---e~~~Pqvr~D 167 (759)
T KOG1104|consen 113 --------QESLKSGNWNEARYLLRFLSDLSNCHVLQADSLINLFESLLDAAI---EENVPQVRRD 167 (759)
T ss_pred --------HHHhhcCChHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHHH---hhcCcchhhh
Confidence 13445567776666677777777 45566666555554433332 3557777753
No 363
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=28.40 E-value=6.4e+02 Score=28.17 Aligned_cols=172 Identities=15% Similarity=0.227 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHHHHhcC---CccchHHhHHHHHHHHHHHhcC------CC-----HHHHHHHHHHHHHHHHhhhhh--h
Q 001582 833 PTSKHGALQQLIKASVAN---DHSIWTKYFNQILTAVLEVLDD------AD-----SSVREVALSLINEMLKNQKDV--M 896 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~---~~~~w~~~f~~lL~~Ll~~L~D------~n-----~~vr~~AL~~L~~L~~~~~~~--~ 896 (1049)
++.|..||.+|.+--... ++..|. .|+.+-..|-|+..- .+ ++-+-.||.+|+.++.+-..+ |
T Consensus 9 ~~~Re~Al~eLsk~r~~~~~La~~LW~-s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 9 PETRENALLELSKKRESFPDLAPLLWH-SFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp HHHHHHHHHHHHHTCCC-TTHHHHHHT-STTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred cchHHHHHHHHHHhhhcccchhHHHHc-CCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 678999999987643221 234576 477666666665521 11 223335677888888643322 2
Q ss_pred -HHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHhhcCch--------hhHHhhhhhhcccchhHHHHHHHHHHHHH
Q 001582 897 -EDSVEIVIEKLLHVTKD--AVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLVTEDEKTLVTCINCLTKLV 965 (1049)
Q Consensus 897 -~~~~e~lLp~Ll~~~~D--s~~~Vr~aA~~~l~~i~~~~~p~--------~~l~vL~p~l~s~~~~t~~~al~~L~~li 965 (1049)
+-.+..+|-.+++...- +.+.+|-..-..+.++++.-+++ .+++...-.+..+..-.+..|.-++.+++
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 22233444455544322 24567777777888888754443 23344444444555556666666666555
Q ss_pred hh-cC-------HHHHHhhhhhHHHH-HHHHhcCCCHHHHHHHHHHHHHH
Q 001582 966 GR-LS-------QEELMAQLPSFLPA-LFEAFGNQSADVRKTVVFCLVDI 1006 (1049)
Q Consensus 966 e~-~~-------~~~l~~~L~~iip~-L~~~~~D~~seVRKaAv~clv~l 1006 (1049)
.. .| .+-. .++..++.. +.....+.++-+=|..+.|+.-+
T Consensus 168 ~dd~GL~yiC~t~eRf-~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRL 216 (262)
T PF04078_consen 168 LDDVGLNYICQTAERF-FAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRL 216 (262)
T ss_dssp HSHHHHHHHTSSHHHH-HHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHH
T ss_pred cchhHHHHHhcCHHHH-HHHHHHHHHHHHHHccCCChhHHHHHHHHHHHH
Confidence 21 11 1111 112222222 22233466666667777776543
No 364
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=27.94 E-value=2.8e+02 Score=28.75 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=48.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhh
Q 001582 864 TAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIV 943 (1049)
Q Consensus 864 ~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~ 943 (1049)
..+.+++.+.+.-+|..|+.++...+.+ +.+.+.++..+-....|...-|+.++--+|+.+... .|+.++.++.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~~~l~ 181 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVIAFLE 181 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHHH
Confidence 4566777777777777776666554433 334555555555555667777777777788777765 6666666654
Q ss_pred h
Q 001582 944 P 944 (1049)
Q Consensus 944 p 944 (1049)
.
T Consensus 182 ~ 182 (197)
T cd06561 182 K 182 (197)
T ss_pred H
Confidence 3
No 365
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.73 E-value=3.9e+02 Score=36.87 Aligned_cols=99 Identities=16% Similarity=0.281 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHHhcCC----ccchHHhHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHHHHhhhhhhHHH
Q 001582 833 PTSKHGALQQLIKASVAND----HSIWTKYFNQILTAVLEVLDDAD---------SSVREVALSLINEMLKNQKDVMEDS 899 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~----~~~w~~~f~~lL~~Ll~~L~D~n---------~~vr~~AL~~L~~L~~~~~~~~~~~ 899 (1049)
.+.|..+|+.+..++++.+ ...|..-|. ++.-++..+.-.+ ......||..|..|+......+..-
T Consensus 1188 ~~vr~~al~vlF~il~~~g~~F~~~~We~v~~-~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~l 1266 (1514)
T KOG0929|consen 1188 LEVRKRALEVLFDILKEHGDDFSKEFWEDVFR-ILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLNNL 1266 (1514)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH-heeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999998764 356777777 5555554443211 1234467777777777666666655
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhh
Q 001582 900 VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ 932 (1049)
Q Consensus 900 ~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~ 932 (1049)
++.++..+..+++..+..+.+....|+..++..
T Consensus 1267 L~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~ 1299 (1514)
T KOG0929|consen 1267 LPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSS 1299 (1514)
T ss_pred HHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHh
Confidence 666676777788888899999999999888754
No 366
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=27.71 E-value=97 Score=23.00 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001582 980 FLPALFEAFGNQSADVRKTVVFCLVDI 1006 (1049)
Q Consensus 980 iip~L~~~~~D~~seVRKaAv~clv~l 1006 (1049)
.+|.|.+.+.+.+.++++.|+.+|-.+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 457778888888999999999998655
No 367
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=27.59 E-value=2.1e+02 Score=29.63 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=52.9
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHH
Q 001582 902 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFL 981 (1049)
Q Consensus 902 ~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~ii 981 (1049)
..||+++.++.=.....+..+...+..|. .++|..++..|.+.+. +..+|..|+++|. ..+.+++...|+.++
T Consensus 46 ~aL~~~L~sv~W~~~~e~~e~~~lL~~W~-~i~~~~aLeLL~~~f~--~~~VR~yAV~~L~----~~sd~eL~~yL~QLV 118 (166)
T cd00870 46 KALTKFLKSVNWSDEQEVKQALELMPKWA-KIDIEDALELLSPYFT--NPVVRKYAVSRLK----LASDEELLLYLLQLV 118 (166)
T ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHhcCC-CCCHHHHHHHcCccCC--CHHHHHHHHHHHH----hCCHHHHHHHHHHHH
Confidence 35788887775444555666777777775 4577788888877664 4567788887765 456788877776665
Q ss_pred HHHHH
Q 001582 982 PALFE 986 (1049)
Q Consensus 982 p~L~~ 986 (1049)
.+|.-
T Consensus 119 QaLKy 123 (166)
T cd00870 119 QALKY 123 (166)
T ss_pred HHHHh
Confidence 55543
No 368
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=26.82 E-value=1.1e+03 Score=29.45 Aligned_cols=92 Identities=16% Similarity=0.066 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHHHHhcCCccchHHhHHHHH--HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHH
Q 001582 833 PTSKHGALQQLIKASVANDHSIWTKYFNQIL--TAVLEVLDDADSSVREVALSLINEMLKNQKD--VMEDSVEIVIEKLL 908 (1049)
Q Consensus 833 ~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL--~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~--~~~~~~e~lLp~Ll 908 (1049)
..-|..++..|..++.. .+++|-.++ +-.--.|.|.+.+||...+.+|..|+...++ .+-++.+.+-..++
T Consensus 289 d~IRv~c~~~L~dwi~l-----vP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rIL 363 (740)
T COG5537 289 DVIRVLCSMSLRDWIGL-----VPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRIL 363 (740)
T ss_pred HHHHHHHHHHHHHHHhc-----chHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 34677788888776632 223333333 1111245788899999999999999986553 35588888888899
Q ss_pred HHh-CCCcHHHHHHHHHHHHHHH
Q 001582 909 HVT-KDAVPKVSNEAEHCLTVVL 930 (1049)
Q Consensus 909 ~~~-~Ds~~~Vr~aA~~~l~~i~ 930 (1049)
+.. -|..- ||-.+...+..+-
T Consensus 364 E~~r~D~d~-VRi~sik~l~~lr 385 (740)
T COG5537 364 EFLRTDSDC-VRICSIKSLCYLR 385 (740)
T ss_pred HHHhhccch-hhHHHHHHHHHHH
Confidence 855 46545 8777766665444
No 369
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=26.40 E-value=1e+03 Score=27.41 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=37.7
Q ss_pred hhHHhhhhhhcccchhHH-HHHHHHHHHHHhhcCHHHHHhhhh--hHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001582 937 RCLSVIVPLLVTEDEKTL-VTCINCLTKLVGRLSQEELMAQLP--SFLPALFEAFGNQSADVRKTVVFCLV 1004 (1049)
Q Consensus 937 ~~l~vL~p~l~s~~~~t~-~~al~~L~~lie~~~~~~l~~~L~--~iip~L~~~~~D~~seVRKaAv~clv 1004 (1049)
.+++.|..++++++..+. ..|+.=++.+++..+ +.. ..|. ..-..+...++|.|++||=.|..++-
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P-E~~-~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q 424 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP-EIN-AVLSKYGVKEIIMNLINHDDDDVKFEALQALQ 424 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc-hHH-HHHHHhhhHHHHHHHhcCCCchhhHHHHHHHH
Confidence 455566666655443322 234455666665553 222 1111 12234678899999999988877763
No 370
>KOG2219 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.31 E-value=1.5e+02 Score=36.52 Aligned_cols=146 Identities=19% Similarity=0.318 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHHHHHHHHHh--h--hhhhHHHHHH-HHHHHHHHhCCC-cHHHHHHHHHHHHHHHhhcCchhhHHhh---
Q 001582 872 DADSSVREVALSLINEMLKN--Q--KDVMEDSVEI-VIEKLLHVTKDA-VPKVSNEAEHCLTVVLSQYDPFRCLSVI--- 942 (1049)
Q Consensus 872 D~n~~vr~~AL~~L~~L~~~--~--~~~~~~~~e~-lLp~Ll~~~~Ds-~~~Vr~aA~~~l~~i~~~~~p~~~l~vL--- 942 (1049)
..|..+...||+.|.+|+.. | ..-|+=|+|. ++...++.+.-+ .-.|.-...++++.+.+++.-+.-+=+|
T Consensus 38 E~Nr~llVEaLRsIaEILiwGDQnDssvFdFFlEkqml~yFl~Ilrq~st~~v~VQLLQTlnIlfeNirhEtslYyLlSN 117 (864)
T KOG2219|consen 38 ENNRKLLVEALRAIAEILIWGDQNDSSVFDFFLEKQMLGYFLRILRQKSTVTVCVQLLQTLNILFENIRHETSLYYLLSN 117 (864)
T ss_pred ccchhHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCceEeHHHHHHHHHHHHhccccceeeeeecc
Confidence 45677788889999999852 2 2346666553 444555544332 2456667788888888887766543332
Q ss_pred ---hhhhccc----chhHHHHHHHHHHHHHhhcCHHHHH-------hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001582 943 ---VPLLVTE----DEKTLVTCINCLTKLVGRLSQEELM-------AQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1008 (1049)
Q Consensus 943 ---~p~l~s~----~~~t~~~al~~L~~lie~~~~~~l~-------~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~ 1008 (1049)
..+|..+ +......=|.+|..+-..+.+..+. ...|-. -..++-+++.++.||-|++.....+|.
T Consensus 118 nyVNsiI~hkFDfq~eEimaYYISFLktlS~KLN~hTihff~Nd~t~dFpLy-vE~ikf~nh~EsMVRiAVRtitLNVyk 196 (864)
T KOG2219|consen 118 NYVNSIIVHKFDFQDEEIMAYYISFLKTLSGKLNKHTIHFFLNDHTNDFPLY-VEAIKFFNHPESMVRIAVRTITLNVYK 196 (864)
T ss_pred cceeeeEEEeecCCcHHHHHHHHHHHHHhhcccCcceeEEeeccccccchhH-HHHHHHhcChHHHHHHHHHheeeeEEE
Confidence 3333322 2333344467777766666655442 122322 335678899999999999999999998
Q ss_pred HhhhhHHHhh
Q 001582 1009 MLGKAFLPYL 1018 (1049)
Q Consensus 1009 ~lGe~l~p~l 1018 (1049)
+-.+.+..|+
T Consensus 197 V~d~Sml~yi 206 (864)
T KOG2219|consen 197 VQDESMLDYI 206 (864)
T ss_pred eCCHHHHHHH
Confidence 7766665444
No 371
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=26.21 E-value=2.9e+02 Score=31.86 Aligned_cols=73 Identities=23% Similarity=0.267 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHHHh-------CCCcHHHHHHHHHHH
Q 001582 858 YFNQILTAVLEVLDDAD--SSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVT-------KDAVPKVSNEAEHCL 926 (1049)
Q Consensus 858 ~f~~lL~~Ll~~L~D~n--~~vr~~AL~~L~~L~~~~~~~~~~~--~e~lLp~Ll~~~-------~Ds~~~Vr~aA~~~l 926 (1049)
.|..|+.+|-..|.|.. -..+-.||.+|.+|+++-..++-.. -.+.+-.+|.-+ .|....||..|++.+
T Consensus 54 e~~eIm~vi~kRl~d~gknWR~VyKaLtlleyLl~~GSErv~~~~ren~~~I~tL~~Fq~iD~~G~dqG~nVRkkak~l~ 133 (336)
T KOG2056|consen 54 EYQEIMDVLWKRLNDSGKNWRHVYKALTLLEYLLKNGSERVVDETRENIYTIETLKDFQYIDEDGKDQGLNVRKKAKELL 133 (336)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhHHHHHHhhceeeCCCCccchHHHHHHHHHHH
Confidence 47778888888888754 4466788999999998655444322 112233333322 356677888888776
Q ss_pred HHHH
Q 001582 927 TVVL 930 (1049)
Q Consensus 927 ~~i~ 930 (1049)
..|-
T Consensus 134 ~LL~ 137 (336)
T KOG2056|consen 134 SLLE 137 (336)
T ss_pred HHhc
Confidence 6543
No 372
>PF12335 SBF2: Myotubularin protein ; InterPro: IPR022096 This domain family is found in eukaryotes, and is approximately 220 amino acids in length. The family is found in association with PF02141 from PFAM, PF03456 from PFAM, PF03455 from PFAM. This family is the middle region of SBF2, a member of the myotubularin family. Myotubularin-related proteins have been suggested to work in phosphoinositide-mediated signalling events that may also convey control of myelination. Mutations of SBF2 are implicated in Charcot-Marie-Tooth disease.
Probab=26.03 E-value=1.7e+02 Score=31.84 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=76.9
Q ss_pred HHHHHhhhhcceeeeccH------HHHHHHHHhhC--CCcccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCchhhh
Q 001582 4 PVLFKLVVITVLVIAESS------DNCIKTMLRNC--KAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQ 75 (1049)
Q Consensus 4 p~Llkl~~~t~kv~a~sa------~~~i~~ii~~~--~~~rll~~i~~~~~~~Ks~~~R~~~~~~l~~~L~~w~~~~~le 75 (1049)
|++...+.....|.++++ .+||..|+.+= -..+++|-+...+ |+...|...|..|..-...-.. .|+
T Consensus 4 p~~~~~~~~~~~~~~~s~rrlevlr~ci~~if~~k~~e~~k~~~av~~~l---k~~~aR~~~~~~L~~~~~~~k~--~L~ 78 (225)
T PF12335_consen 4 PPVVSIVDKNGNVFANSARRLEVLRNCISFIFDNKILEARKSLPAVLRAL---KSRSARQAFCRELSKHVKSNKA--VLD 78 (225)
T ss_pred CCchhHHhcccchhhhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH---ccchHHHHHHHHHHHHHhcCCc--cCC
Confidence 555555555555666665 36888888765 3468899999988 6889999999998887665221 365
Q ss_pred h-cHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhChHHHHHHHhcCCHHHHHHHhh
Q 001582 76 R-SADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRIINE 132 (1049)
Q Consensus 76 ~-~~~~le~~ikk~l~DA~~~vR~~aR~~fw~f~~~~P~~a~~l~~~Ld~~~qk~L~~ 132 (1049)
. .-+.|.+.|..+|.|.+. .+=|+.-..+.| .+..+|..+.+.++-+|..
T Consensus 79 ~~qF~~lv~lin~aLq~~s~------~dd~~~Aa~LL~-ls~~fyrkl~~g~~eylyt 129 (225)
T PF12335_consen 79 DQQFDYLVRLINCALQDCSE------SDDYGIAAALLP-LSTAFYRKLSNGVQEYLYT 129 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHh------ccchHHHHHHHH-HHHHHHHHcCcchhHHHHH
Confidence 4 479999999999999644 233444334442 3345555555555555554
No 373
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=25.11 E-value=8.2e+02 Score=31.57 Aligned_cols=87 Identities=21% Similarity=0.314 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCC
Q 001582 836 KHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADS-SVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDA 914 (1049)
Q Consensus 836 R~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~-~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds 914 (1049)
...||+.|.++|.......|......|+.-.++.+-|... -+..-+|.-...||....- ..++.++-+.|+...+.
T Consensus 24 kq~ALqsLhd~i~~kr~r~~q~~~EpIMfKyleLCVdLkKg~lAKdGL~QYk~~~Qqvnv---~SlE~VvrhflklAe~k 100 (988)
T KOG2072|consen 24 KQDALQSLHDTITAKRHRWWQTVLEPIMFKYLELCVDLKKGHLAKDGLFQYKNLCQQVNV---KSLENVVRHFLKLAEEK 100 (988)
T ss_pred ccHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhch---HhHHHHHHHHHHHHHHH
Confidence 3579999999998888888988888899888888877543 3667788888888873321 34666777777777666
Q ss_pred cHHHHHHHHHH
Q 001582 915 VPKVSNEAEHC 925 (1049)
Q Consensus 915 ~~~Vr~aA~~~ 925 (1049)
.......++++
T Consensus 101 te~Aq~qad~l 111 (988)
T KOG2072|consen 101 TEAAQEQADEL 111 (988)
T ss_pred HHHHHHHHHHH
Confidence 55666666554
No 374
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=24.73 E-value=7.7e+02 Score=25.30 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=34.0
Q ss_pred HhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 001582 857 KYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSV 900 (1049)
Q Consensus 857 ~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~ 900 (1049)
+....+|+.+...|..+...-+..||.+|..|++..+..+..+.
T Consensus 65 d~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I~~~~ 108 (164)
T PF13925_consen 65 DLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVIRSNL 108 (164)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888877788899999999887666555443
No 375
>PF07159 DUF1394: Protein of unknown function (DUF1394); InterPro: IPR009828 This family consists of several hypothetical eukaryotic proteins of around 320 residues in length. The function of this family is unknown.
Probab=24.55 E-value=1.9e+02 Score=32.88 Aligned_cols=76 Identities=16% Similarity=0.414 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHHHHhcCcc--hHHHHHHHHHHHHHHhc
Q 001582 441 SAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHK-VAQAALSTLADIIPSCRKP--FESYMERILPHVFSRLI 517 (1049)
Q Consensus 441 egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~k-V~~~aL~tL~~l~~~~~~~--~~~~l~~lL~~ll~klg 517 (1049)
+-.+.+..+|+++...++.+ ++-+...+.+..-..+||.. ....+.++|..++..++.. |..-+..++|.++..|.
T Consensus 18 ev~~~v~~VL~~~~~iL~~L-~~Yrgas~~Ir~Ai~~Ps~ee~qe~aw~al~P~V~kLk~Fy~Fs~~le~~~~~ll~~L~ 96 (303)
T PF07159_consen 18 EVYNEVNEVLEEGEQILQDL-YTYRGASREIRQAISNPSDEELQEKAWEALEPLVKKLKEFYEFSQELEKVFPKLLKELC 96 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhccCchHHHHHHHcCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666655433332 22233344455556777776 9999999999999988764 56888999999999995
No 376
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=24.45 E-value=6e+02 Score=33.79 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=71.6
Q ss_pred HHHHH-HHHHHHHHHhcCCCCchhhhhhHHH---HHHHHHHhh-CCCcHHHHHHHHHHHHHHHHhcCcchHHHHHH-HHH
Q 001582 437 CARVS-AFNYLRSLLQQGPKGIQEVIQNFEK---VMKLFFQHL-DDPHHKVAQAALSTLADIIPSCRKPFESYMER-ILP 510 (1049)
Q Consensus 437 keR~e-gL~~L~~ll~~~~~~~~~v~~~l~~---l~~~l~~~l-~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~-lL~ 510 (1049)
++|++ ||+.|++++...+.... |-..-.+ .+++|.-.+ .-.|.||.+.+|+.+. ++++..+-+++-+.- .|.
T Consensus 1739 ~~~v~m~LtAL~Nli~~nPdlas-vfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~-~~Tan~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLAS-VFGSEILLIGNFPLLITYLRCRKHPKLQILALQVIL-LATANKECVTDLATCNVLT 1816 (2235)
T ss_pred HHHHHHHHHHHHHHHhhCcchhh-hccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHH-HHhcccHHHHHHHhhhHHH
Confidence 34544 89999999987664211 1011111 223333322 4578899999999887 566666555544432 344
Q ss_pred HHHHHhcCCchhhhHHHHHHHHHHHhh-------cCCcchHHHHHHhhccCCCHHHHHHHHHHHHH
Q 001582 511 HVFSRLIDPKELVRQPCSTTLDIVSKT-------YSVDSLLPALLRSLDEQRSPKAKLAVIEFAIS 569 (1049)
Q Consensus 511 ~ll~klgD~k~~vR~~a~~~L~~~~e~-------~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~ 569 (1049)
-||.-| ...++.|+.+..+|=++..+ ..-.-+ -.|..++....++.+|.++.+.+..
T Consensus 1817 ~LL~lL-HS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l-~yil~~~c~~~~~QqRAqaAeLlaK 1880 (2235)
T KOG1789|consen 1817 TLLTLL-HSQPSMRARVLDVLYALSSNGQIGKEALEHGGL-MYILSILCLTNSDQQRAQAAELLAK 1880 (2235)
T ss_pred HHHHHH-hcChHHHHHHHHHHHHHhcCcHHHHHHHhcCch-hhhhHHHhccCcHHHHHHHHHHHHH
Confidence 444444 45788999988888766522 111111 1122223334567777777776643
No 377
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=24.43 E-value=7.1e+02 Score=27.03 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHHHHHHhh---cCchhhHHhhhh
Q 001582 912 KDAVPKVSNEAEHCLTVVLSQ---YDPFRCLSVIVP 944 (1049)
Q Consensus 912 ~Ds~~~Vr~aA~~~l~~i~~~---~~p~~~l~vL~p 944 (1049)
.|..+.+.-.|-+|+..+... +-|.++...|..
T Consensus 88 ~d~~~~~s~LclEcf~~~~~~v~~~y~~k~~~FL~~ 123 (219)
T PF14677_consen 88 EDFDKQVSLLCLECFLEILSTVCQRYPDKFSQFLSA 123 (219)
T ss_dssp ------HHHHHHHHHHHHHHHHHHTSGGGHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 566677777777777655433 344455444443
No 378
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=24.27 E-value=4.2e+02 Score=33.71 Aligned_cols=67 Identities=19% Similarity=0.121 Sum_probs=48.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh
Q 001582 865 AVLEVLDDADSSVREVALSLINEMLKNQ-KDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLS 931 (1049)
Q Consensus 865 ~Ll~~L~D~n~~vr~~AL~~L~~L~~~~-~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~ 931 (1049)
..+..|...+..+...|-.+|+.+|..- ..+.+-.--.=||+|+.++.+...+|.+.|..|++.++-
T Consensus 237 e~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf 304 (717)
T KOG1048|consen 237 EVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVF 304 (717)
T ss_pred HHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhc
Confidence 3455556667777778888899888532 222222222348999999999999999999999998873
No 379
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=24.05 E-value=8.9e+02 Score=28.54 Aligned_cols=70 Identities=16% Similarity=0.339 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHhC----CCcHHHHHHHHHHHHHHH
Q 001582 861 QILTAVLEVLDDAD---SSVREVALSLINEMLKNQKDVMEDSVEI-VIEKLLHVTK----DAVPKVSNEAEHCLTVVL 930 (1049)
Q Consensus 861 ~lL~~Ll~~L~D~n---~~vr~~AL~~L~~L~~~~~~~~~~~~e~-lLp~Ll~~~~----Ds~~~Vr~aA~~~l~~i~ 930 (1049)
.|+..|..++.+.. ..+-..|+.++..++.+.+..|.--.|. +++.+|+.+. -+..++....=.++.+|+
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~Aic 183 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAIC 183 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHh
Confidence 55666777776654 5678888888888888777665433332 3444445444 133455555555555554
No 380
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=23.87 E-value=6.7e+02 Score=24.29 Aligned_cols=63 Identities=14% Similarity=0.300 Sum_probs=43.8
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHHHHhcCcch
Q 001582 432 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDP-HHKVAQAALSTLADIIPSCRKPF 501 (1049)
Q Consensus 432 ~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Ds-n~kV~~~aL~tL~~l~~~~~~~~ 501 (1049)
...+|--.-.-+..|-....+.+ ..+..++..|.++|.|. |-.|+-.+|-+|-.++..-.+.+
T Consensus 12 ~~~~~~p~~k~~~~I~~~t~~~~-------~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~ 75 (127)
T smart00273 12 NNDEWGPKGKHLREIIQGTHNEK-------SSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRV 75 (127)
T ss_pred CCCCCCcCHHHHHHHHHHHccCH-------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHH
Confidence 34446555555555554443322 36788999999999998 99999999999988886544333
No 381
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=23.62 E-value=7.3e+02 Score=25.36 Aligned_cols=112 Identities=17% Similarity=0.289 Sum_probs=66.9
Q ss_pred hhHHHHHH-HHHHHHHHhCC-CcHHHHHHHHHHHHHHHhhcCchhhHHh------hhhhhcc----cchhHHHHHHHHHH
Q 001582 895 VMEDSVEI-VIEKLLHVTKD-AVPKVSNEAEHCLTVVLSQYDPFRCLSV------IVPLLVT----EDEKTLVTCINCLT 962 (1049)
Q Consensus 895 ~~~~~~e~-lLp~Ll~~~~D-s~~~Vr~aA~~~l~~i~~~~~p~~~l~v------L~p~l~s----~~~~t~~~al~~L~ 962 (1049)
-|+-|+|. ++..+++.++. ....|....-+++..++..+.-..-+-+ +..+|.. .+......=+.+|.
T Consensus 18 ~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIsfLK 97 (149)
T PF09758_consen 18 FFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYISFLK 97 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHHHHH
Confidence 46666663 44555554443 5678888899999999988755432222 2222221 12222223345555
Q ss_pred HHHhhcCHHHHH-------hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001582 963 KLVGRLSQEELM-------AQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1007 (1049)
Q Consensus 963 ~lie~~~~~~l~-------~~L~~iip~L~~~~~D~~seVRKaAv~clv~l~ 1007 (1049)
.+.-++..+.+. ...| +.-...+.++++|+.||.|++.....+|
T Consensus 98 ~lSlkln~~tv~fffn~~~~~FP-L~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 98 TLSLKLNKDTVQFFFNERNDSFP-LYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHhhcCCCceeEeEecCCCCCC-cHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 566566655542 1233 2345678889999999999999887765
No 382
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=23.57 E-value=1.4e+03 Score=31.85 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=27.9
Q ss_pred hCCC-cHHHHHHHHHHHHHHHhhc--CchhhHHhhhhhhcccchh
Q 001582 911 TKDA-VPKVSNEAEHCLTVVLSQY--DPFRCLSVIVPLLVTEDEK 952 (1049)
Q Consensus 911 ~~Ds-~~~Vr~aA~~~l~~i~~~~--~p~~~l~vL~p~l~s~~~~ 952 (1049)
+||- +|.-...-..|+..|+..+ .|+.++.|+..+|..=.|+
T Consensus 380 FGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWR 424 (2195)
T KOG2122|consen 380 FGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWR 424 (2195)
T ss_pred cccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhcccc
Confidence 3554 3555666677888777663 5667888888888764554
No 383
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif. A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).
Probab=23.45 E-value=5.4e+02 Score=24.67 Aligned_cols=71 Identities=17% Similarity=0.172 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhcCCc-----------hhhhHHHHHH
Q 001582 462 QNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPK-----------ELVRQPCSTT 530 (1049)
Q Consensus 462 ~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~~ll~klgD~k-----------~~vR~~a~~~ 530 (1049)
..+.+|++.|+.............||-|.-.|++.. .++..|+.+..... ..+|..+...
T Consensus 8 gtl~~Li~~L~~~~~~~d~~f~~~Flltyr~F~tp~---------~ll~~L~~rf~~~~~~~~~~~~~~~~~~~~rv~~~ 78 (127)
T smart00229 8 GTLEKLIEHLTEAFDKADPFFVETFLLTYRSFITTQ---------ELLQLLLYRYNAIPPESWVERKVNPLRVKNRVLNI 78 (127)
T ss_pred ecHHHHHHHHcCCCcCCCHHHHHHHHHHhhhhCCHH---------HHHHHHHHHhCCCCcHHHHHHHhhHHHHHHHHHHH
Confidence 456777777776654344555666665555555433 24444444443211 2255566666
Q ss_pred HHHHHhhcCCc
Q 001582 531 LDIVSKTYSVD 541 (1049)
Q Consensus 531 L~~~~e~~~~d 541 (1049)
|..|.+.++.|
T Consensus 79 l~~Wv~~~~~d 89 (127)
T smart00229 79 LRHWVENYWQD 89 (127)
T ss_pred HHHHHHHCCcc
Confidence 66666666554
No 384
>PF14750 INTS2: Integrator complex subunit 2
Probab=23.01 E-value=2e+03 Score=29.46 Aligned_cols=109 Identities=20% Similarity=0.255 Sum_probs=68.1
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhcCc-hhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHH-H--Hhhh
Q 001582 902 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP-FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEE-L--MAQL 977 (1049)
Q Consensus 902 ~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~~p-~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~-l--~~~L 977 (1049)
..|-+|++--|-+. +.+..+++.+|- .-|+.+|..++.-.+....+.|+.+...+..+++-+. + .+..
T Consensus 920 p~L~klvhfQgyp~--------~llp~~V~~IPSmHicldfi~Ell~~~~~~kqvFaI~L~s~L~~~Y~l~~sl~~a~~~ 991 (1049)
T PF14750_consen 920 PNLAKLVHFQGYPS--------ELLPMLVEGIPSMHICLDFIPELLAQPDLEKQVFAIQLASHLCHKYPLPKSLSVARLA 991 (1049)
T ss_pred hhHHHHHHhcCCCH--------HHhHHHHccCcHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence 45666666666553 334444555444 3478888888876677777899999999988886332 2 1222
Q ss_pred hhHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh---hhHHHhh
Q 001582 978 PSFLPALFEAF-GNQSADVRKTVVFCLVDIYIMLG---KAFLPYL 1018 (1049)
Q Consensus 978 ~~iip~L~~~~-~D~~seVRKaAv~clv~l~~~lG---e~l~p~l 1018 (1049)
-.++..+...+ .+....+=+.+.=|++.++..|+ +++...|
T Consensus 992 ~~~~~~ll~~l~~~~~~~~~~~~lP~l~~~~~aFP~L~~~i~~lL 1036 (1049)
T PF14750_consen 992 LNVLSTLLSVLSSDSRSKFLKPVLPALVRICEAFPPLADDIVRLL 1036 (1049)
T ss_pred HHHHHHHhhhcCchhHHHHHHHHhHHHHHHHHHCCChHHHHHHHH
Confidence 23334444443 35567777888888888887776 3444443
No 385
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=22.61 E-value=3.5e+02 Score=33.07 Aligned_cols=132 Identities=18% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHH-------HhcCcchH---HHHHHHHHHHHHHh-cCCchhhhHHHHHHHHHHHh
Q 001582 468 MKLFFQHLDDPHHKVAQAALSTLADII-------PSCRKPFE---SYMERILPHVFSRL-IDPKELVRQPCSTTLDIVSK 536 (1049)
Q Consensus 468 ~~~l~~~l~Dsn~kV~~~aL~tL~~l~-------~~~~~~~~---~~l~~lL~~ll~kl-gD~k~~vR~~a~~~L~~~~e 536 (1049)
++++..++.|+..-++-..|+.|-+++ ++..++|+ ++...++.-.=+.+ +..|-++
T Consensus 49 LellVeriqd~d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y~dl~~iydkw~~~n~K~~L------------- 115 (881)
T COG5110 49 LELLVERIQDPDIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWL------------- 115 (881)
T ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHhccccccccCCchhhhcCCCcchHHHHHhhccCcchhhHH-------------
Q ss_pred hcCCcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHH----HHhHccccCC-CC---------
Q 001582 537 TYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLW----LAKLTPLVHD-KN--------- 602 (1049)
Q Consensus 537 ~~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~----l~~l~~~~~D-kn--------- 602 (1049)
.-+...+.-.-+-..|-..|.|=.+ ++..+.+.| +.+++.++.| +|
T Consensus 116 --------aDilS~l~m~yse~~kh~sL~YRl~------------g~i~D~~~WGHeYvrhLa~eI~ev~n~~~e~daps 175 (881)
T COG5110 116 --------ADILSALCMVYSENGKHKSLAYRLE------------GNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPS 175 (881)
T ss_pred --------HHHHHHHeeecccccchhhHHHHhh------------cccCCHHHHHHHHHHHHHHHHHHHhcchhhccCCc
Q ss_pred -HHHHHHHHHHHHHHHHhcCchhHHHHhhcC
Q 001582 603 -TKLKEAAITCIISVYTHYDSTAVLNFILSL 632 (1049)
Q Consensus 603 -~~VR~aA~~~L~~ly~h~~~~~~~~~l~~L 632 (1049)
.+.|+-+..++..++.|++...-..+|.++
T Consensus 176 ~~dt~~l~l~ivpfflkHNaE~dAiDlL~Ev 206 (881)
T COG5110 176 FADTRDLGLEIVPFFLKHNAEFDAIDLLVEV 206 (881)
T ss_pred hhHHHHHHHHHhHHHHhcccchHHHHHHHHh
No 386
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=22.40 E-value=7.1e+02 Score=24.00 Aligned_cols=96 Identities=9% Similarity=0.109 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHH
Q 001582 838 GALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPK 917 (1049)
Q Consensus 838 ~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~ 917 (1049)
....+|..++...+...+++.+......|.++|...-. +..-+++|..|..-....+...-...+..+|+.+.+. ..
T Consensus 10 ~~y~~lg~~va~~~~~~~~~~~~~Y~~~l~~al~~~~~--~~~~~Nvl~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g-~i 86 (117)
T PF08349_consen 10 KIYRELGRLVANAGKRPLEEVFEEYEELLMEALSKPPT--RGSHINVLQHIFGYFKKKLSSEEKQHFLDLIEDYREG-KI 86 (117)
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcC-Cc
Confidence 35667777776655544555566666666666654221 2233455555554444444444444566677777665 22
Q ss_pred HHHHHHHHHHHHHhhcCch
Q 001582 918 VSNEAEHCLTVVLSQYDPF 936 (1049)
Q Consensus 918 Vr~aA~~~l~~i~~~~~p~ 936 (1049)
=.......|+.++..++-.
T Consensus 87 ~l~~~l~~L~~~~~ry~~~ 105 (117)
T PF08349_consen 87 PLSVPLTLLKHLARRYPDE 105 (117)
T ss_pred cHHHHHHHHHHHHHHCCCH
Confidence 2333445566666555543
No 387
>COG1980 Archaeal fructose 1,6-bisphosphatase [Carbohydrate transport and metabolism]
Probab=22.21 E-value=69 Score=35.29 Aligned_cols=49 Identities=33% Similarity=0.438 Sum_probs=36.4
Q ss_pred HHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHH-------HHHHHHHHHHHhcCCch
Q 001582 472 FQHLDDPHHKVAQAALSTLADIIPSCRKPFESY-------MERILPHVFSRLIDPKE 521 (1049)
Q Consensus 472 ~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~-------l~~lL~~ll~klgD~k~ 521 (1049)
..+|.||-+--+...-.-+++.+..|| +|++| =++.||.+|+||.|--+
T Consensus 308 ~DlFdDpaFD~aRq~A~eiadyiRR~G-pF~PHrLp~eeMEYTtlP~VlekLkdrf~ 363 (369)
T COG1980 308 VDLFDDPAFDYARQVALEIADYIRRHG-PFEPHRLPPEEMEYTTLPKVLEKLKDRFE 363 (369)
T ss_pred hhhccCcchHHHHHHHHHHHHHHHhcC-CCCCCCCChHHcccccHHHHHHHHHhhcc
Confidence 467899998655555556788999998 55544 47899999999976433
No 388
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=22.01 E-value=7.2e+02 Score=23.95 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 001582 860 NQILTAVLEVLDDADSSVREVALSLINEMLKNQ 892 (1049)
Q Consensus 860 ~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~ 892 (1049)
...+..|+..|.|++..|+..|+.+|.+.|...
T Consensus 7 ~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 7 DWGIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 344778899999999999999999999999654
No 389
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=21.97 E-value=1.3e+02 Score=36.50 Aligned_cols=72 Identities=13% Similarity=0.263 Sum_probs=53.7
Q ss_pred HHHHHHHhhcCCcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhHccccCC-CCHHHHH
Q 001582 529 TTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHD-KNTKLKE 607 (1049)
Q Consensus 529 ~~L~~~~e~~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~D-kn~~VR~ 607 (1049)
..++.+...+....+++.|++++. .-.+..+.++++||.+. ..|.+++.++.. -+.++..
T Consensus 21 ~~v~~llkHI~~~~ImDlLLklIs-~d~~~~~~~ilewL~~q------------------~LI~~Li~~L~p~~~~~~q~ 81 (475)
T PF04499_consen 21 NFVDNLLKHIDTPAIMDLLLKLIS-TDKPESPTGILEWLAEQ------------------NLIPRLIDLLSPSYSSDVQS 81 (475)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHc-cCcccchHHHHHHHHHh------------------CHHHHHHHHhCCCCCHHHHH
Confidence 345566677888888898988875 33477888999998531 346788887764 7789999
Q ss_pred HHHHHHHHHHHh
Q 001582 608 AAITCIISVYTH 619 (1049)
Q Consensus 608 aA~~~L~~ly~h 619 (1049)
+|..+|.+|.+.
T Consensus 82 naa~~L~aII~i 93 (475)
T PF04499_consen 82 NAADFLKAIIRI 93 (475)
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 390
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=21.94 E-value=1.8e+02 Score=33.33 Aligned_cols=173 Identities=9% Similarity=0.087 Sum_probs=78.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHHHHhcCc-chHHHHHH
Q 001582 434 SDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLD-----DPHHKVAQAALSTLADIIPSCRK-PFESYMER 507 (1049)
Q Consensus 434 ~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~-----Dsn~kV~~~aL~tL~~l~~~~~~-~~~~~l~~ 507 (1049)
-.-..|.+|+..++.++..+.. .+ ..++..+..--. |+... ++..|.....+ ..++|---
T Consensus 50 ~~f~lR~AA~~c~kay~~~N~~-~q------~~~l~~~i~~~~~~~~~~~~~n-------l~~~Ll~~~~~~~~dpy~~w 115 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNNEE-GQ------TAFLSTLIPSYASGNSDDPIAN-------LLTALLDYDSDLSLDPYRCW 115 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HH-HH------HHHHHTTSSTT--SS--SSSS--------HHHHHT------SS-HHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHH-HH------HHHHHHHhccCCCCcccchhhH-------HHHHHHHhhccccCCHHHHH
Confidence 3799999999999999986432 11 012222222111 22222 33333321111 23333332
Q ss_pred HHHHHHHHhcCCchhhhHHHHHH-HHHHHhhcCCcchHHHHHHhhcc----CCCHHHHHHHHHHHHHHhhhhccCCCCC-
Q 001582 508 ILPHVFSRLIDPKELVRQPCSTT-LDIVSKTYSVDSLLPALLRSLDE----QRSPKAKLAVIEFAISSLNKHAMNSEGS- 581 (1049)
Q Consensus 508 lL~~ll~klgD~k~~vR~~a~~~-L~~~~e~~~~d~~l~~L~r~l~~----~~~pkvk~~~L~~l~~~l~~~~~~~~~~- 581 (1049)
+-..+|.-+-.....-|+.+.+. .....+.-++..++..+...+.. ...+++++..|..|..+|.+....-.+|
T Consensus 116 fAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL 195 (312)
T PF04869_consen 116 FAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFL 195 (312)
T ss_dssp HHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 33334444421111112222222 11112234445566777766654 2369999999999988886421100112
Q ss_pred CChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHHhcC
Q 001582 582 GNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYD 621 (1049)
Q Consensus 582 ~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ly~h~~ 621 (1049)
...+.+...+.. ..-..+.+.-|+--+.-+|+..|..++
T Consensus 196 ~~~s~l~~Li~~-~~~~~~~~~~VqGL~A~LLGicyef~~ 234 (312)
T PF04869_consen 196 SEGSNLQSLIEF-SNQSSSEDVLVQGLCAFLLGICYEFST 234 (312)
T ss_dssp CSTTHHHHHHHH-HS--TCCCHHHHHHHHHHHHHHHHT-S
T ss_pred cCcchHHHHHHH-hhcCCCCcchHHHHHHHHHHHHHHhcC
Confidence 222333333322 222335778888888888899997653
No 391
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=21.93 E-value=1.5e+03 Score=27.62 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=70.9
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHhcCCccchHH--hHHHHHHHHHHHhc---C-----CCHHHHHHHHHHHHH
Q 001582 818 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTK--YFNQILTAVLEVLD---D-----ADSSVREVALSLINE 887 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~~eR~~aL~~L~~li~~~~~~~w~~--~f~~lL~~Ll~~L~---D-----~n~~vr~~AL~~L~~ 887 (1049)
..+++......+ -+||-+||--+.++++.++.....+ .|..+=..+++.|- + .+...+..++.+|..
T Consensus 13 ~~~~~~L~~~k~---D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLac 89 (698)
T KOG2611|consen 13 LDDCLKLLKGKR---DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLAC 89 (698)
T ss_pred hhhHHHHhcccC---hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 345666666555 4699999999999999887765444 44444444555441 1 345577788889998
Q ss_pred HHHhhhhhhHHHHHHHHHHHH---HHhCCCc----HHHHHHHHHHHHHHHhh
Q 001582 888 MLKNQKDVMEDSVEIVIEKLL---HVTKDAV----PKVSNEAEHCLTVVLSQ 932 (1049)
Q Consensus 888 L~~~~~~~~~~~~e~lLp~Ll---~~~~Ds~----~~Vr~aA~~~l~~i~~~ 932 (1049)
.|+.-.-.-.+.+-.-||.|+ .+-+|.. .-|...+-+|+..++.+
T Consensus 90 FC~~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~ 141 (698)
T KOG2611|consen 90 FCRVPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA 141 (698)
T ss_pred HhCChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC
Confidence 886432111222333345554 4445654 34778888999999877
No 392
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=21.86 E-value=1.2e+02 Score=31.34 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 001582 875 SSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVTKDAVPKVSNEAEHCLTVV 929 (1049)
Q Consensus 875 ~~vr~~AL~~L~~L~~~~~~~~~~~--~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i 929 (1049)
..+...+|.+|+.|+..... ++.. ...++..|+.++..+...++..|.+.+..+
T Consensus 130 ~~~~~~~l~Clkal~n~~~G-~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 130 IDIEHECLRCLKALMNTKYG-LEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHHHHHHHHHHTSSHHH-HHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHH-HHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 44555667777776653321 1111 112334444444444455555555555444
No 393
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.84 E-value=5.4e+02 Score=35.50 Aligned_cols=75 Identities=9% Similarity=0.077 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhc
Q 001582 859 FNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY 933 (1049)
Q Consensus 859 f~~lL~~Ll~~L~D~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~~~Vr~aA~~~l~~i~~~~ 933 (1049)
|+.+...++....+++..+|-.|+..+..|.+..+..+...+..++|-|-+.+.|-.++|-..+...++.+-..+
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~l 1613 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVL 1613 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 666777777777888899999999999999999999999999999999999999998999888888777765543
No 394
>KOG3629 consensus Guanine-nucleotide releasing factor [Signal transduction mechanisms]
Probab=21.79 E-value=7.3e+02 Score=30.35 Aligned_cols=167 Identities=11% Similarity=0.097 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhh--CCCc-----HHHHHHHHHHHHHHHHhcCcchH--HHHHHHHHHHHHHhc-CCchhhhHHHHHHHHH
Q 001582 464 FEKVMKLFFQHL--DDPH-----HKVAQAALSTLADIIPSCRKPFE--SYMERILPHVFSRLI-DPKELVRQPCSTTLDI 533 (1049)
Q Consensus 464 l~~l~~~l~~~l--~Dsn-----~kV~~~aL~tL~~l~~~~~~~~~--~~l~~lL~~ll~klg-D~k~~vR~~a~~~L~~ 533 (1049)
-..|+++|.+++ -|+| ..|.+.++.+|..++..|.++|. +-.+.++-.+|..++ ..++-.|+++..--++
T Consensus 104 t~~vL~llldRye~e~s~~~ses~~~v~naI~il~~WL~~~pEDF~~~~~~~~~ls~lL~~g~~~~~~e~ra~a~l~r~~ 183 (728)
T KOG3629|consen 104 TAIVLDLLLDRYELENSVNGSESALLVQNAIRILMCWLETYPEDFYDSDKDFAMLSSLLDFGGRNKLTELRAKARLQREV 183 (728)
T ss_pred cHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHhChHhhcCccHHHHHHHHHHHhcCCCCcccchhHHHHHHHH
Confidence 344555555544 2232 35899999999999999999994 678899999999996 5555666677666666
Q ss_pred HHhhcCCcchHHHHHHhhccCC--CHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhHccc--cC-CCCHHHHHH
Q 001582 534 VSKTYSVDSLLPALLRSLDEQR--SPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPL--VH-DKNTKLKEA 608 (1049)
Q Consensus 534 ~~e~~~~d~~l~~L~r~l~~~~--~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~--~~-Dkn~~VR~a 608 (1049)
..+..+-+--|+.+..+-.+.. ...+-+..+..+++.|. | ++++- ..++...+...| -. |+-..+ --
T Consensus 184 ~~ri~~~~~~LP~~~~~~~d~~~~~~dv~~f~~d~iAEQLT-~-~DA~L-----Fk~l~phqClGcvWs~Rd~~ghl-~p 255 (728)
T KOG3629|consen 184 FKRIGGMQAALPSLGQYVADMGNKMFDVGKFNCDQIAEQLT-F-WDAAL-----FKELLPHQCLGCVWSKRDTAGHL-VP 255 (728)
T ss_pred HHhccccccCCCccccccCCCCccchhhhhhhHHHHHHHHH-H-HHHHH-----HHHhhhHhcccceeccCCCcccc-cc
Confidence 6555555555555555543432 23444444445555553 1 23321 223444444443 22 433211 11
Q ss_pred HHHHHHHHHHhcCchhHHHHhh-cCCHHHHH
Q 001582 609 AITCIISVYTHYDSTAVLNFIL-SLSVEEQN 638 (1049)
Q Consensus 609 A~~~L~~ly~h~~~~~~~~~l~-~L~~~~~~ 638 (1049)
...+-+.-|+-+....|...|. +|.+++..
T Consensus 256 tvrATi~QFN~vs~~Vvssilg~~lrp~qRA 286 (728)
T KOG3629|consen 256 TVRATIEQFNSVSQRVVSSILGPDLRPEQRA 286 (728)
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCCcHHHH
Confidence 1222334444444444444443 47777654
No 395
>PF06169 DUF982: Protein of unknown function (DUF982); InterPro: IPR010385 This family consists of several hypothetical proteins from Rhizobium meliloti (Sinorhizobium meliloti), Rhizobium loti (Mesorhizobium loti) and Agrobacterium tumefaciens. The function of this family is unknown.; PDB: 2KPQ_A.
Probab=21.63 E-value=2.5e+02 Score=25.06 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCCchhhhhcHHHHHHHHHHhccCCChHHHHHHHHHHHHHHh
Q 001582 58 CEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAK 109 (1049)
Q Consensus 58 ~~~l~~~L~~w~~~~~le~~~~~le~~ikk~l~DA~~~vR~~aR~~fw~f~~ 109 (1049)
.+-++.++..|+.. .-..+...++.|.-..-++..++ .||++|-.+.+
T Consensus 21 ~~A~~~L~~~WP~~-~g~~y~~A~~aC~~Al~g~~~~e---~AR~AFi~AA~ 68 (76)
T PF06169_consen 21 RDAADFLLDEWPVR-RGPAYRAALRACRAALDGRKPPE---DARRAFIAAAR 68 (76)
T ss_dssp HHHHHHHHH--S----SHHHHHHHHHHHHHHTT-S-HH---HHHHHHHHHHH
T ss_pred HHHHHHHHccCCCC-CCHHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHH
Confidence 45667778999983 34556667777777777777766 68999987764
No 396
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=21.56 E-value=5.6e+02 Score=29.67 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHH
Q 001582 488 STLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDI 533 (1049)
Q Consensus 488 ~tL~~l~~~~~~~~~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~ 533 (1049)
.+|.+|+.+-- .+.. +..|+..|-+++.|...-= ..+.+||.+
T Consensus 40 ~lm~eIA~~ty-~~~e-~~eIm~vi~kRl~d~gknW-R~VyKaLtl 82 (336)
T KOG2056|consen 40 TLMAEIAQATY-NFVE-YQEIMDVLWKRLNDSGKNW-RHVYKALTL 82 (336)
T ss_pred HHHHHHHHHhc-CHHH-HHHHHHHHHHHHhhccchH-HHHHHHHHH
Confidence 45677776654 3333 4456788888885433222 245555543
No 397
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=21.53 E-value=7.4e+02 Score=23.91 Aligned_cols=114 Identities=17% Similarity=0.230 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhCCCc-H
Q 001582 839 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAV-P 916 (1049)
Q Consensus 839 aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D-~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~~~Ds~-~ 916 (1049)
.+..+..++..+. .-...+-.+|..+.+-+.+ .+..+...--..+...+... .+.+-.++..+++...+.. .
T Consensus 27 ~l~~l~~~~~~~~--~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~----~~~i~~~l~~~l~~~~~~~~~ 100 (148)
T PF08389_consen 27 FLEDLLQLLQSSP--QHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN----SPDILEILSQILSQSSSEANE 100 (148)
T ss_dssp HHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCHCCHH
T ss_pred HHHHHHHHhccch--hHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhccccHH
Confidence 5555555554431 1112344555666666654 12111111112222222221 2223334555555555444 8
Q ss_pred HHHHHHHHHHHHHHhhcCchh-----hHHhhhhhhcccchhHHHHHHHH
Q 001582 917 KVSNEAEHCLTVVLSQYDPFR-----CLSVIVPLLVTEDEKTLVTCINC 960 (1049)
Q Consensus 917 ~Vr~aA~~~l~~i~~~~~p~~-----~l~vL~p~l~s~~~~t~~~al~~ 960 (1049)
++...+-.|+..++.-.++.. ++..+..++... .....|++|
T Consensus 101 ~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~c 147 (148)
T PF08389_consen 101 ELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSP--ELREAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCH--HHHHHHHHh
Confidence 899999999999998777654 444444444322 223444444
No 398
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=21.45 E-value=3.9e+02 Score=25.70 Aligned_cols=93 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCcccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCchhhhhcHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhCh
Q 001582 33 KAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWP 112 (1049)
Q Consensus 33 ~~~rll~~i~~~~~~~Ks~~~R~~~~~~l~~~L~~w~~~~~le~~~~~le~~ikk~l~DA~~~vR~~aR~~fw~f~~~~P 112 (1049)
+.++++|.+..+++.+++.+.|..|.-.+-.+-..-+-+ -+.++.+++..+.+..++.- .|.+.-++...|
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~------~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~- 73 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS------DEVLNALMESILKNWTQETV--QRQALICLIVLC- 73 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc------HHHHHHHHHHHHhccccchh--HHHHHHHHHHHH-
Q ss_pred HHHHHHHhcCCHHHHHHHhhccC
Q 001582 113 ERSRRLFSSFDPAIQRIINEEDG 135 (1049)
Q Consensus 113 ~~a~~l~~~Ld~~~qk~L~~~~~ 135 (1049)
+...=...|+.++-|.|.+.++
T Consensus 74 -q~q~~~~~lp~~~~~~l~~~~~ 95 (121)
T PF12397_consen 74 -QSQENVDSLPRKVFKALLKLPD 95 (121)
T ss_pred -HcccccccCCHHHHHHHHcCcc
No 399
>PF08326 ACC_central: Acetyl-CoA carboxylase, central region; InterPro: IPR013537 This region is found in various eukaryotic acetyl-CoA carboxylases, N-terminal to the catalytic domain (IPR000022 from INTERPRO). Enzymes containing this domain (6.4.1.2 from EC) are involved in the synthesis of long-chain fatty acids, as they catalyses the rate limiting step in this process. ; GO: 0003989 acetyl-CoA carboxylase activity, 0005524 ATP binding, 0006633 fatty acid biosynthetic process; PDB: 2DN8_A 2KCC_A 3COJ_H.
Probab=21.23 E-value=32 Score=43.89 Aligned_cols=144 Identities=14% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhcCCchhhhH-HHHHHHHHHHhhcCC
Q 001582 462 QNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQ-PCSTTLDIVSKTYSV 540 (1049)
Q Consensus 462 ~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~~ll~klgD~k~~vR~-~a~~~L~~~~e~~~~ 540 (1049)
.+|.++++.+.. +.+ ..++.+.++-|.+++..+....+.|...++..||.+--+--..... .-.+++..+++....
T Consensus 112 ~~l~~~i~~~~~-~~~--r~~~~~~~~pL~~l~~~y~~G~~~h~~~v~~~LL~~Yl~VE~~F~~~~~d~vI~~LR~~~k~ 188 (708)
T PF08326_consen 112 KQLRKIIDSYLA-LEP--RAAFFATVAPLVDLVQRYRGGLKGHAKSVVADLLEEYLSVEKLFQGKRYDDVILSLREENKD 188 (708)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhhc-cCc--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhh
Confidence 355566666555 333 6788889999999999999999999999999999998654444433 347777888888775
Q ss_pred cchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHH
Q 001582 541 DSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIIS 615 (1049)
Q Consensus 541 d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~Dkn~~VR~aA~~~L~~ 615 (1049)
|. ..+...+..+..-+.|-.++.=|.+.+... +. .....+...|.+|+.+-...+.+|=-.|..+|+.
T Consensus 189 dl--~~Vv~~~~SH~~v~~Kn~Lil~lL~~l~~~--~~---~~~~~~~~~L~~La~L~~~~~~~VAL~AR~iLi~ 256 (708)
T PF08326_consen 189 DL--DKVVDIILSHSQVKSKNKLILALLDQLSEP--NM---PLTASLRDILKRLAELESRSYSKVALKAREILIQ 256 (708)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred hH--HHHHHHHhCcHhHHHHHHHHHHHHHHHhcc--CC---CchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 52 444454445543344443333333333221 10 1345677888888888777788888888887765
No 400
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=20.57 E-value=8.3e+02 Score=30.36 Aligned_cols=177 Identities=14% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCC-CcHHHHHHHHH--------------HHHHHHHhcCcchHHH
Q 001582 440 VSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDD-PHHKVAQAALS--------------TLADIIPSCRKPFESY 504 (1049)
Q Consensus 440 ~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~D-sn~kV~~~aL~--------------tL~~l~~~~~~~~~~~ 504 (1049)
+.|--.++.+|..|.+ ++...++..|..++.- -.++-+...++ .+.+|.-.-=.-|.+.
T Consensus 209 kY~k~~v~KmLkyGsk------~q~a~iI~sl~Ghv~kLlRH~eaa~Vve~ay~~~A~l~Qr~~li~EfYG~efqlfK~s 282 (652)
T KOG2050|consen 209 KYAKFFVQKMLKYGSK------AQKAKIINSLRGHVVKLLRHREAAYVVEYAYNDFATLEQRQYLIQEFYGDEFQLFKDS 282 (652)
T ss_pred HHHHHHHHHHHhcCCH------HHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhHHHHHHhcc
Q ss_pred HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHh--hcCCcchHHHHHHhhccCCCHHHHHHHHHHHHHHhhhhccCCCC--
Q 001582 505 MERILPHVFSRLIDPKELVRQPCSTTLDIVSK--TYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEG-- 580 (1049)
Q Consensus 505 l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e--~~~~d~~l~~L~r~l~~~~~pkvk~~~L~~l~~~l~~~~~~~~~-- 580 (1049)
=...|..++......|++|-....+.|+.+.+ .+. -.++..+|.-....-+++.+.++|+-+.+.+.++.-..++
T Consensus 283 n~~Tl~kil~~~pekk~~I~~~l~~~I~~v~eKg~v~-~tivHk~mlEy~~~ade~e~~e~l~ll~elv~e~vHT~dGS~ 361 (652)
T KOG2050|consen 283 NDKTLDKILAEAPEKKASILRHLKAIITPVAEKGSVD-HTIVHKLMLEYLTIADEEEKSELLELLKELVPEMVHTRDGSR 361 (652)
T ss_pred CcccHHHHHHhChHhHHHHHHHHHHHhHHHhhcchhH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchHH
Q ss_pred -------CCChhhHHHHHHhHcc----ccCCCCHHHHHHHHHHHHHHHHhcCchhHHHHh
Q 001582 581 -------SGNLGILKLWLAKLTP----LVHDKNTKLKEAAITCIISVYTHYDSTAVLNFI 629 (1049)
Q Consensus 581 -------~~~~~~~~~~l~~l~~----~~~Dkn~~VR~aA~~~L~~ly~h~~~~~~~~~l 629 (1049)
+++..+=+.+|..+-. ...|--..+ +|++++.+.+++.++.-+
T Consensus 362 vAm~li~~a~aKeRK~IiK~~K~h~~K~A~~~yGh~------vlia~ldc~DDT~l~kk~ 415 (652)
T KOG2050|consen 362 VAMKLIWHATAKERKLIIKNMKEHVEKIANDEYGHL------VLIALLDCTDDTKLLKKL 415 (652)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhccCce------ehhhhhcccchHHHHHHH
No 401
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=20.53 E-value=1.3e+03 Score=31.69 Aligned_cols=63 Identities=27% Similarity=0.387 Sum_probs=47.3
Q ss_pred hcCHHHHHh-hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhHHHhh-hcCChhhHHHH
Q 001582 967 RLSQEELMA-QLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYL-ERLNSTQLRLV 1029 (1049)
Q Consensus 967 ~~~~~~l~~-~L~~iip~L~~~~~D~~seVRKaAv~clv~l~~~lGe~l~p~l-~~L~~s~~kLL 1029 (1049)
.++.+.+.. +|+.|+--+...+-++..|+|.+++..++.+-..+|.+...++ ..|...-.+..
T Consensus 551 ~l~~~~i~~~~L~~illkic~~l~~~s~e~rd~srktl~~i~k~Lg~~yl~~Vi~el~~Tl~rg~ 615 (1364)
T KOG1823|consen 551 FLGNAEIVLRNLPSILLDICYLLRSRSAELRDASRKTLAKIIKILGPKYLYFVIKELQTTLKRGF 615 (1364)
T ss_pred cccchHHHHhcCcHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 344455544 6999999999999999999999999999999999998654433 44444444433
No 402
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=20.34 E-value=8.1e+02 Score=28.88 Aligned_cols=41 Identities=12% Similarity=0.315 Sum_probs=33.3
Q ss_pred cchHHHHHHHHHHHHHHh--cCCchhhhHHHHHHHHHHHhhcC
Q 001582 499 KPFESYMERILPHVFSRL--IDPKELVRQPCSTTLDIVSKTYS 539 (1049)
Q Consensus 499 ~~~~~~l~~lL~~ll~kl--gD~k~~vR~~a~~~L~~~~e~~~ 539 (1049)
......+..++|.||+++ .|--+++|..|...|..+.+.+-
T Consensus 248 ~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 248 NQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred hhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc
Confidence 345677889999999999 45577899999999999987644
Done!