Query 001582
Match_columns 1049
No_of_seqs 324 out of 610
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 21:57:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/001582.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_31-35//hhsearch_pdb/001582hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk1_A Protein STU2; STU2P, XM 1.0 1 1 206.4 22.5 211 822-1036 22-249 (249)
2 2of3_A ZYG-9; multifunctional 1.0 1 1 204.3 22.4 238 758-1037 20-265 (266)
3 2qk2_A LP04448P; mini spindles 1.0 1 1 186.5 22.9 215 820-1038 19-236 (242)
4 4ffb_C Protein STU2; tubulin f 1.0 1 1 177.6 19.6 208 430-640 17-237 (278)
5 2qk2_A LP04448P; mini spindles 1.0 1 1 174.4 18.6 208 430-644 23-231 (242)
6 2qk1_A Protein STU2; STU2P, XM 1.0 1 1 173.6 20.1 211 421-641 20-243 (249)
7 2of3_A ZYG-9; multifunctional 1.0 1 1 166.9 20.1 201 430-644 54-261 (266)
8 4fdd_A Transportin-1; heat rep 1.0 1 1 158.9 34.5 467 423-1031 361-848 (852)
9 4ffb_C Protein STU2; tubulin f 1.0 1 1 158.7 18.8 214 823-1039 16-247 (278)
10 2bpt_A Importin beta-1 subunit 1.0 1 1 156.7 38.9 198 818-1019 599-823 (861)
No 1
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=206.38 Aligned_cols=211 Identities=14% Similarity=0.215 Sum_probs=190.9
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHH-HHHCCCCCCH--HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHH-HHH
Q ss_conf 998303999992589999999999-9840895004--886999999999994-28898899999999999998414-536
Q 001582 822 LHLMCNGNDGSPTSKHGALQQLIK-ASVANDHSIW--TKYFNQILTAVLEVL-DDADSSVREVALSLINEMLKNQK-DVM 896 (1049)
Q Consensus 822 L~~l~~~~~~~~~~r~~aL~~L~~-li~~~~~~~~--~~~f~~lL~~Ll~~L-~D~n~~Vr~~AL~~L~~L~~~~~-~~~ 896 (1049)
...+...+ |.+|++|+..|.. ++.. .+.++ ...|..++..|...+ .|+|..|+..|+.+|..|++.++ ..|
T Consensus 22 ~~~l~s~~---w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f 97 (249)
T 2qk1_A 22 QERITSSK---WKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGF 97 (249)
T ss_dssp HHHHTCSS---HHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred HHHHHCCC---HHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 87851687---999999999999999745-98656674239999999999833589899999999999999976265454
Q ss_pred H-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC------C-CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 7-899999999999918993779999999999999412------9-1025775213200563367989999999999521
Q 001582 897 E-DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY------D-PFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRL 968 (1049)
Q Consensus 897 ~-~~~e~iLp~Ll~~~~Ds~~~V~~aA~~~l~~i~~~~------~-p~~~l~vL~p~l~s~~~~~~~~al~~L~~lie~~ 968 (1049)
. +|+..++|.+|++++|+++.|+.++..++..|+..+ + +..++..|.+.+.+++|+++.+++.+++.+++..
T Consensus 98 ~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 98 SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 18789999999999873797799999999999999973012357769999999999876998399999999999999876
Q ss_pred CH--HHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 98--8999566-66999999982599978999999999999999645-588841049956588899999971
Q 001582 969 SQ--EELMAQL-PSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLRLVTIYANRI 1036 (1049)
Q Consensus 969 ~~--~~l~~~L-~~iip~L~~~l~D~~seVRKAAv~clV~l~~~lGe-~i~p~l~~L~~s~~kLL~~yi~R~ 1036 (1049)
+. ..+..++ +.++|.+.++++|++++||++|.+||+.+|.++|+ ++.||++.|++.+++.|..|++++
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ki~~~~~~~ 249 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETVKTL 249 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 785066889879999999999866998999999999999999981978789999987088999999987459
No 2
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=204.28 Aligned_cols=238 Identities=13% Similarity=0.155 Sum_probs=196.7
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHH
Q ss_conf 88877679878744323321-10111235688999999666687897532247767789998999998303999992589
Q 001582 758 GSNTYLEGFSTPRIDINGLR-DHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSK 836 (1049)
Q Consensus 758 ~~~~~~~~~~~Pr~d~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~lL~~l~~~~~~~~~~r 836 (1049)
...+.+|.|.+||.|..... +++... + =.++...+... +|.++
T Consensus 20 ~~k~~~w~f~~p~~e~v~~L~~~~~~~--~-------------------------------~~~~~~~lfs~---d~k~~ 63 (266)
T 2of3_A 20 QLKLVKWNFQAPTDEHISQLQTLLGNQ--A-------------------------------KVSLMSQLFHK---DFKQH 63 (266)
T ss_dssp TTCSCCSCCSSCCHHHHHHHHHHHHTT--B-------------------------------CHHHHHHHTCS---CHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHH--C-------------------------------CHHHHHHHCCC---CHHHH
T ss_conf 346666888999989999999999984--5-------------------------------59999986287---79999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHC
Q ss_conf 9999999999840895004886999999999994288988999999999999984145---36789-9999999999918
Q 001582 837 HGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD---VMEDS-VEIVIEKLLHVTK 912 (1049)
Q Consensus 837 ~~aL~~L~~li~~~~~~~~~~~f~~lL~~Ll~~L~D~n~~Vr~~AL~~L~~L~~~~~~---~~~~~-~e~iLp~Ll~~~~ 912 (1049)
.+|++.|...+..+. +....+++.++.|+.-.+.|+|..|...+|.+|..++..+.. .|..| +..++|.|+++.|
T Consensus 64 ~~ale~L~~~l~~~~-~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlG 142 (266)
T 2of3_A 64 LAALDSLVRLADTSP-RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTG 142 (266)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 999999998830176-9999999999999999971887999999999999999999864556509899978999999828
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH---HHHHHHHC
Q ss_conf 993779999999999999412910257752132005633679899999999995219889995666699---99999825
Q 001582 913 DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFL---PALFEAFG 989 (1049)
Q Consensus 913 Ds~~~V~~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~ii---p~L~~~l~ 989 (1049)
|++..||..+..++..+..+++|.+++.++..++++++|+++.+|++++..+++.+|... ...+ |.++++++
T Consensus 143 d~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~-----~~~l~~~~~ia~ll~ 217 (266)
T 2of3_A 143 EAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP-----LKSLSVEKTVAPFVG 217 (266)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG-----GGGGCHHHHHGGGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHC
T ss_conf 974889999999999999878999999999999716989999999999999998629972-----000243479999873
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 999789999999999999996455888410499565888999999710
Q 001582 990 NQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRIS 1037 (1049)
Q Consensus 990 D~~seVRKAAv~clV~l~~~lGe~i~p~l~~L~~s~~kLL~~yi~R~~ 1037 (1049)
|+|++||++|++|++++|.++||.+|+++++|++.++.+|+.+|+|++
T Consensus 218 D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~er~~r~~ 265 (266)
T 2of3_A 218 DKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERIKRTG 265 (266)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 998789999999999999981199999884489999999999986445
No 3
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=186.47 Aligned_cols=215 Identities=12% Similarity=0.149 Sum_probs=192.5
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999830399999258999999999998408950048869999999999942-889889999999999999841453678
Q 001582 820 QILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLD-DADSSVREVALSLINEMLKNQKDVMED 898 (1049)
Q Consensus 820 ~lL~~l~~~~~~~~~~r~~aL~~L~~li~~~~~~~~~~~f~~lL~~Ll~~L~-D~n~~Vr~~AL~~L~~L~~~~~~~~~~ 898 (1049)
.++..+.+. +|.+|++|+..|..++..+.. .....+.+++..|...+. |+|..|+..|+.+|..|++.++..|.+
T Consensus 19 ~l~~~l~s~---~w~~R~~a~~~L~~l~~~~~~-~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 19 DFYDKLEEK---KWTLRKESLEVLEKLLTDHPK-LENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp THHHHHTCS---SHHHHHHHHHHHHHHHHHCSS-BCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHCCC---CHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999662638---789999999999998712888-8877799999999998456898999999999999999998661798
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHH-HHHHHH
Q ss_conf 9999999999991899377999999999999941291025775213200563367989999999999521988-999566
Q 001582 899 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQE-ELMAQL 977 (1049)
Q Consensus 899 ~~e~iLp~Ll~~~~Ds~~~V~~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~~~~~al~~L~~lie~~~~~-~l~~~L 977 (1049)
|.+.++|.|+++++|++..||.++..++..++..++...+++.+...+.+++|.++..++.++..++..++++ ....++
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 99999999999976898899999999999999728999999999998848983999999999999998718877668999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 669999999825999789999999999999996455-8884104995658889999997100
Q 001582 978 PSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKA-FLPYLERLNSTQLRLVTIYANRISQ 1038 (1049)
Q Consensus 978 ~~iip~L~~~l~D~~seVRKAAv~clV~l~~~lGe~-i~p~l~~L~~s~~kLL~~yi~R~~~ 1038 (1049)
+.++|.+..+++|++.+||++|..|+..++.++|++ +.+|++.|++.+++.|..|++++.-
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~v 236 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAEI 236 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999884699858999999999999998499999999985279999999999988887
No 4
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=177.62 Aligned_cols=208 Identities=14% Similarity=0.187 Sum_probs=160.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC------CH
Q ss_conf 79999947899999999999934998704--66430999999998730797689999999999999986095------34
Q 001582 430 LSPSSDWCARVSAFNYLRSLLQQGPKGIQ--EVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRK------PF 501 (1049)
Q Consensus 430 ~~~s~~WkeR~egL~~L~~ll~~~~~~~~--~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~------~~ 501 (1049)
.+.|+|||+|++|++.|..+++....... .+...+.+++.+|.+++.|+|..|++.+|++|..|+..++. .+
T Consensus 17 ~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~ 96 (278)
T 4ffb_C 17 RLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHN 96 (278)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 52068189999999999999863865555306799999989999998545449999999999999999851221012025
Q ss_pred HHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99998889999998-149961104999999999996358-8230899998631389999999999999999522106899
Q 001582 502 ESYMERILPHVFSR-LIDPKELVRQPCSTTLDIVSKTYS-VDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSE 579 (1049)
Q Consensus 502 ~~~l~~lL~~ll~k-lgD~k~~vR~~a~~~L~~~~e~~~-~d~~l~~L~r~l~~~~spkvk~~~L~~l~~~L~~~~~~~~ 579 (1049)
..++..++|.|+.| +||.|..+|+.+..+|..+++... .+.++..+...+ .++||+++.+.+.||...|..| |..
T Consensus 97 ~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~f--g~~ 173 (278)
T 4ffb_C 97 ITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFF-EKKLPKLIAAAANCVYELMAAF--GLT 173 (278)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHH--TTT
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHH--CCC
T ss_conf 8889999899999970576389999999999999986176999999999988-4268778999999999999984--987
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHH---HHHHHCCCHHHHHHH
Q ss_conf 9887032799999680113799988999999999999972071468---999621798999999
Q 001582 580 GSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAV---LNFILSLSVEEQNSL 640 (1049)
Q Consensus 580 ~~~~~~~~~~~l~~i~~~~~Dkn~~VR~aA~~~L~~ly~h~~~~~~---~~~l~~L~~~~~~~~ 640 (1049)
.......+..++..+..+++|+|++||++|..+++.+|+++|+... ..++.+|.+..+..+
T Consensus 174 ~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~l 237 (278)
T 4ffb_C 174 NVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDL 237 (278)
T ss_dssp TCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 6881447999999999998178699999999999999999684344555666611899999999
No 5
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=174.44 Aligned_cols=208 Identities=15% Similarity=0.260 Sum_probs=175.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 79999947899999999999934998704664309999999987307-97689999999999999986095349999888
Q 001582 430 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLD-DPHHKVAQAALSTLADIIPSCRKPFESYMERI 508 (1049)
Q Consensus 430 ~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~-Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~l 508 (1049)
.+.|++|++|++|+..|..+++....... .++.+++..|.+.+. |+|.+|...++.+++.|+..+++.|++|+..+
T Consensus 23 ~l~s~~w~~R~~a~~~L~~l~~~~~~~~~---~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~i 99 (242)
T 2qk2_A 23 KLEEKKWTLRKESLEVLEKLLTDHPKLEN---GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASAC 99 (242)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHCSSBCC---CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCCCCC---CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 62638789999999999998712888887---779999999999845689899999999999999999866179899999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 99999981499611049999999999963588230899998631389999999999999999522106899988703279
Q 001582 509 LPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILK 588 (1049)
Q Consensus 509 L~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~~spkvk~~~L~~l~~~L~~~~~~~~~~~~~~~~~ 588 (1049)
+|.|+.+++|.+..||+++..+|..+.+.++.+.+++.|...+. +++|.+|.+++.|+...+..+ +++. .....+.
T Consensus 100 lp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~-~~~~~vr~~~l~~l~~~l~~~--~~~~-~~~~~l~ 175 (242)
T 2qk2_A 100 VPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLS-NKNPSVKSETALFIARALTRT--QPTA-LNKKLLK 175 (242)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTC--CGGG-CCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHC--CCCC-CCHHHHH
T ss_conf 99999997689889999999999999972899999999999884-898399999999999999871--8877-6689999
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99996801137999889999999999999720714689996217989999999998
Q 001582 589 LWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRAL 644 (1049)
Q Consensus 589 ~~l~~i~~~~~Dkn~~VR~aA~~~L~~ly~h~~~~~~~~~l~~L~~~~~~~~~~aL 644 (1049)
.+++.+..+++|++.+||++|..+|..|+.++|...+..++.+|.....+.+...+
T Consensus 176 ~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~ 231 (242)
T 2qk2_A 176 LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQ 231 (242)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999998846998589999999999999984999999999852799999999999
No 6
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=173.65 Aligned_cols=211 Identities=14% Similarity=0.271 Sum_probs=173.7
Q ss_pred CHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9889984387999994789999999999-993499870466430999999998730-79768999999999999998609
Q 001582 421 SLSDALSEGLSPSSDWCARVSAFNYLRS-LLQQGPKGIQEVIQNFEKVMKLFFQHL-DDPHHKVAQAALSTLADIIPSCR 498 (1049)
Q Consensus 421 ~l~e~l~~g~~~s~~WkeR~egL~~L~~-ll~~~~~~~~~v~~~l~~l~~~l~~~l-~Dsn~kV~~~aL~tL~~l~~~~~ 498 (1049)
+..+.| .|++|++|++|++.|.. +++..++.. ....++.++++.|.+.+ .|+|..|...++.+|+.|+..++
T Consensus 20 ~f~~~l-----~s~~w~eRk~al~~L~~~~~~~~~~i~-~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~ 93 (249)
T 2qk1_A 20 DFQERI-----TSSKWKDRVEALEEFWDSVLSQTKKLK-STSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLK 93 (249)
T ss_dssp THHHHH-----TCSSHHHHHHHHHHHHHHTGGGCCCBC-CTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 078785-----168799999999999999974598656-67423999999999983358989999999999999997626
Q ss_pred -CCHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC------C-CCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf -5349-999888999999814996110499999999999635------8-823089999863138999999999999999
Q 001582 499 -KPFE-SYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTY------S-VDSLLPALLRSLDEQRSPKAKLAVIEFAIS 569 (1049)
Q Consensus 499 -~~~~-~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~------~-~d~~l~~L~r~l~~~~spkvk~~~L~~l~~ 569 (1049)
+.|+ +|+..++|.+|.+++|.|..||+++..+|+.+.+.. + .+.+++.|+..+. +++|.+|.+++.|+..
T Consensus 94 ~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~-~k~~~vk~~al~~l~~ 172 (249)
T 2qk1_A 94 TPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMK-HKTPQIRMECTQLFNA 172 (249)
T ss_dssp TTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTT-CSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_conf 545418789999999999873797799999999999999973012357769999999999876-9983999999999999
Q ss_pred HHHHHCCCCCCCC-CHHHH-HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9522106899988-70327-999996801137999889999999999999720714689996217989999999
Q 001582 570 SLNKHAMNSEGSG-NLGIL-KLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLR 641 (1049)
Q Consensus 570 ~L~~~~~~~~~~~-~~~~~-~~~l~~i~~~~~Dkn~~VR~aA~~~L~~ly~h~~~~~~~~~l~~L~~~~~~~~~ 641 (1049)
.+... +.. +. ....+ ...++.+..++.|.+.+||++|..+|..|+.++|...+..++.+|.......++
T Consensus 173 ~~~~~--~~~-~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ki~ 243 (249)
T 2qk1_A 173 SMKEE--KDG-YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIE 243 (249)
T ss_dssp HHHHC--CSC-SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHHHHH
T ss_pred HHHHC--CCC-CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99876--785-066889879999999999866998999999999999999981978789999987088999999
No 7
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=166.87 Aligned_cols=201 Identities=13% Similarity=0.237 Sum_probs=165.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC---CHHHH-H
Q ss_conf 7999994789999999999993499870466430999999998730797689999999999999986095---34999-9
Q 001582 430 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRK---PFESY-M 505 (1049)
Q Consensus 430 ~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~---~~~~~-l 505 (1049)
.+=++|||.|.+|++.|+..+++... ++..+++-+++-++-+|.|+|++|+..+|++|..++..++. .|.++ .
T Consensus 54 ~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea 130 (266)
T 2of3_A 54 QLFHKDFKQHLAALDSLVRLADTSPR---SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV 130 (266)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHCHH---HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 86287799999999999988301769---999999999999999971887999999999999999999864556509899
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 88899999981499611049999999999963588230899998631389999999999999999522106899988703
Q 001582 506 ERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLG 585 (1049)
Q Consensus 506 ~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~~spkvk~~~L~~l~~~L~~~~~~~~~~~~~~ 585 (1049)
..++|.|+.|+||.|+.||+++...|..+.+.+++..+++.++..+ .++|+++|.+.|.|+...+..| |.. +
T Consensus 131 ~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~-ksKN~R~R~e~l~~l~~li~~~--G~~-~---- 202 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL-KSKNARQRSECLLVIEYYITNA--GIS-P---- 202 (266)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHH--CSG-G----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHC--CCC-C----
T ss_conf 9789999998289748899999999999998789999999999997-1698999999999999999862--997-2----
Q ss_pred HHHHHH---HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 279999---96801137999889999999999999720714689996217989999999998
Q 001582 586 ILKLWL---AKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRAL 644 (1049)
Q Consensus 586 ~~~~~l---~~i~~~~~Dkn~~VR~aA~~~L~~ly~h~~~~~~~~~l~~L~~~~~~~~~~aL 644 (1049)
...+ +.|+.++.|++++||++|..+++.+|.|.|+. +..++..|+....+++..-+
T Consensus 203 --~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~-v~k~lg~L~~~~~~~l~er~ 261 (266)
T 2of3_A 203 --LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ-MWKAAGRMADKDKSLVEERI 261 (266)
T ss_dssp --GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH-HHHHHCCCCHHHHHHHHHHH
T ss_pred --CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHH
T ss_conf --000243479999873998789999999999999981199-99988448999999999998
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=158.94 Aligned_cols=467 Identities=13% Similarity=0.160 Sum_probs=258.0
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC-CH
Q ss_conf 89984387999994789999999999993499870466430999999998730797689999999999999986095-34
Q 001582 423 SDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRK-PF 501 (1049)
Q Consensus 423 ~e~l~~g~~~s~~WkeR~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~-~~ 501 (1049)
...+.+ .+.+.+|..|.+|+..|..+.+.... .+.+.+..++..+...+.|+|..|-..+..+++.+...+++ ..
T Consensus 361 ~~~l~~-~l~~~~~~~R~aa~~alg~i~~~~~~---~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 436 (852)
T 4fdd_A 361 LPLLKE-LLFHHEWVVKESGILVLGAIAEGCMQ---GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP 436 (852)
T ss_dssp HHHHHH-HHTCSSHHHHHHHHHHHHHTTTTTHH---HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT
T ss_pred HHHHHH-HHCCCCHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 999999-85599889999999999999863568---89987999999999871799889999999999999988611047
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC------CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999888999999814996110499999999999635882------3089999863138999999999999999952210
Q 001582 502 ESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVD------SLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHA 575 (1049)
Q Consensus 502 ~~~l~~lL~~ll~klgD~k~~vR~~a~~~L~~~~e~~~~d------~~l~~L~r~l~~~~spkvk~~~L~~l~~~L~~~~ 575 (1049)
..++..+++.+++.+.|....||..+..+|..+.+.++.+ .+++.|...+... ..+....+++.+. .+...
T Consensus 437 ~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~-~~~~~~~~~~ai~-~l~~~- 513 (852)
T 4fdd_A 437 DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY-QHKNLLILYDAIG-TLADS- 513 (852)
T ss_dssp TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC-CHHHHHHHHHHHH-HHHHH-
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH-HHHHH-
T ss_conf 89999999999999858988899999999999999736766767999999999999883-7479999999999-99997-
Q ss_pred CCCCCCCCHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCHHHH
Q ss_conf 689998870327999996801---13799988999999999999972071468999621798999999999842143579
Q 001582 576 MNSEGSGNLGILKLWLAKLTP---LVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIE 652 (1049)
Q Consensus 576 ~~~~~~~~~~~~~~~l~~i~~---~~~Dkn~~VR~aA~~~L~~ly~h~~~~~~~~~l~~L~~~~~~~~~~aL~~~~p~~~ 652 (1049)
++. .+.........++.+.. -+.|...++| .+..++..+...+|. .+..+ .. ..++.+-
T Consensus 514 ~~~-~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~-~~~~~--------~~-------~i~~~~~ 575 (852)
T 4fdd_A 514 VGH-HLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQS-GFLPY--------CE-------PVYQRCV 575 (852)
T ss_dssp HGG-GGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGG-GGHHH--------HH-------HHHHHHH
T ss_pred HHH-HHCCHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHH-HHHHH--------HH-------HHHHHHH
T ss_conf 424-313678999988999999873330469999-999999999999748-67988--------99-------9999999
Q ss_pred HHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 9999999844431-025788999998788884343333467777788888987799988766421000123677888862
Q 001582 653 VDLMNYLQSKKER-QRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSD 731 (1049)
Q Consensus 653 ~~l~~~l~~~~~~-~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 731 (1049)
..+..++...... ..+. ..+.+ +.
T Consensus 576 ~~l~~~l~~~~~~~~~~~-~~~~~-------------------------------d~----------------------- 600 (852)
T 4fdd_A 576 NLVQKTLAQAMLNNAQPD-QYEAP-------------------------------DK----------------------- 600 (852)
T ss_dssp HHHHHHHHHHHHHHHCTT-TSCCC-------------------------------CT-----------------------
T ss_pred HHHHHHHHHHHHHHCCCC-CCCCC-------------------------------CC-----------------------
T ss_conf 999999999987533886-66887-------------------------------61-----------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45664210245677766776444677888776798787443233211011123568899999966668789753224776
Q 001582 732 ETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSL 811 (1049)
Q Consensus 732 ~~~e~~~q~~~~~~~~~~~~~~~d~~~~~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 811 (1049)
..+....+-... +... .++.| . .+
T Consensus 601 ~~~~~~l~~l~~--------------------------------l~~~--l~~~~---------------~-------~~ 624 (852)
T 4fdd_A 601 DFMIVALDLLSG--------------------------------LAEG--LGGNI---------------E-------QL 624 (852)
T ss_dssp HHHHHHHHHHHH--------------------------------HHHH--HGGGG---------------H-------HH
T ss_pred HHHHHHHHHHHH--------------------------------HHHH--HHHHH---------------H-------HH
T ss_conf 199999999978--------------------------------9998--74769---------------9-------88
Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 77899989999983039999925899999999999840895004886999999999994288988999999999999984
Q 001582 812 TDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKN 891 (1049)
Q Consensus 812 ~~~~~~I~~lL~~l~~~~~~~~~~r~~aL~~L~~li~~~~~~~~~~~f~~lL~~Ll~~L~D~n~~Vr~~AL~~L~~L~~~ 891 (1049)
-.....++-++..+.+. .++.|..++..+..++...+ ..+..++..++..+.+.|.+.+..++..|+..+.+++..
T Consensus 625 ~~~~~~~~~l~~~l~~~---~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~ 700 (852)
T 4fdd_A 625 VARSNILTLMYQCMQDK---MPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQ 700 (852)
T ss_dssp HHTCCHHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 36771899999983899---84499999999999999816-888987999999999876942068999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHCC-CCHHHHHHHHHHHH
Q ss_conf 14536789999999999991899--377999999999999941291------0257752132005-63367989999999
Q 001582 892 QKDVMEDSVEIVIEKLLHVTKDA--VPKVSNEAEHCLTVVLSQYDP------FRCLSVIVPLLVT-EDEKTLVTCINCLT 962 (1049)
Q Consensus 892 ~~~~~~~~~e~iLp~Ll~~~~Ds--~~~V~~aA~~~l~~i~~~~~p------~~~l~vL~p~l~s-~~~~~~~~al~~L~ 962 (1049)
.+..|.+|+..+++.|+..+.++ ...+++.+..++-.++..++. .+++...+..+.. ++...+..+++.+.
T Consensus 701 ~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~ 780 (852)
T 4fdd_A 701 MGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGIC 780 (852)
T ss_dssp HGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 11767878999999999985799887207788999999999868897675589999999998653666079999999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHH
Q ss_conf 999521988999566669999999825999789999999999999996455-888410499565888999
Q 001582 963 KLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKA-FLPYLERLNSTQLRLVTI 1031 (1049)
Q Consensus 963 ~lie~~~~~~l~~~L~~iip~L~~~l~D~~seVRKAAv~clV~l~~~lGe~-i~p~l~~L~~s~~kLL~~ 1031 (1049)
.++...+ ..+..++..++.. +..+.+..++.+..-...+..+-..+|++ +..++++|++..+..|..
T Consensus 781 ~li~~~p-~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 848 (852)
T 4fdd_A 781 TMISVNP-SGVIQDFIFFCDA-VASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAA 848 (852)
T ss_dssp HHHHHCG-GGTGGGHHHHHHH-HHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHHCH-HHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHH
T ss_conf 9998691-8688889999999-870689978999999999999987677201999987299999999998
No 9
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=158.69 Aligned_cols=214 Identities=13% Similarity=0.186 Sum_probs=177.3
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-----
Q ss_conf 9830399999258999999999998408950048----8699999999999428898899999999999998414-----
Q 001582 823 HLMCNGNDGSPTSKHGALQQLIKASVANDHSIWT----KYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK----- 893 (1049)
Q Consensus 823 ~~l~~~~~~~~~~r~~aL~~L~~li~~~~~~~~~----~~f~~lL~~Ll~~L~D~n~~Vr~~AL~~L~~L~~~~~----- 893 (1049)
..+.+.| |.+|.+|+++|..++......... ..|..+...+...+.|+|..|...+|.+|..++...+
T Consensus 16 e~l~sk~---WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 16 ERLTYKL---WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHTTCSS---HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHCCCCC---HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7520681---8999999999999986386555530679999998999999854544999999999999999985122101
Q ss_pred -HHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH
Q ss_conf -53678999999999999-18993779999999999999412-9102577521320056336798999999999952198
Q 001582 894 -DVMEDSVEIVIEKLLHV-TKDAVPKVSNEAEHCLTVVLSQY-DPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQ 970 (1049)
Q Consensus 894 -~~~~~~~e~iLp~Ll~~-~~Ds~~~V~~aA~~~l~~i~~~~-~p~~~l~vL~p~l~s~~~~~~~~al~~L~~lie~~~~ 970 (1049)
..+..++..++|.|+++ ++|.++.++..+..++..++..+ +...++..+.+++.+++++++.+|+.+|..+++.+|.
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 20258889999899999970576389999999999999986176999999999988426877899999999999998498
Q ss_pred HHH--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCCHHHHHHHHHHHHHHHHC
Q ss_conf 899--95666699999998259997899999999999999964558----8841049956588899999971000
Q 001582 971 EEL--MAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAF----LPYLERLNSTQLRLVTIYANRISQA 1039 (1049)
Q Consensus 971 ~~l--~~~L~~iip~L~~~l~D~~seVRKAAv~clV~l~~~lGe~i----~p~l~~L~~s~~kLL~~yi~R~~~~ 1039 (1049)
..+ ...++.+++.+.++++|++++||++|..|++.+|..+|+.+ ..+++.|.+.+++-|+..+++....
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k~~~~ 247 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGDE 247 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSCCCC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 768814479999999999981786999999999999999996843445556666118999999999999866799
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=156.72 Aligned_cols=198 Identities=12% Similarity=0.183 Sum_probs=152.9
Q ss_pred HHHHHHHHCCCCCCCH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999998303999992-589999999999984089500488699999999999428898899999999999998414536
Q 001582 818 IPQILHLMCNGNDGSP-TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 896 (1049)
Q Consensus 818 I~~lL~~l~~~~~~~~-~~r~~aL~~L~~li~~~~~~~~~~~f~~lL~~Ll~~L~D~n~~Vr~~AL~~L~~L~~~~~~~~ 896 (1049)
++.++..+.+.+ + ..|..++..+..++...+..+ ..++..++..|+..+.+.+..++..++.++..|++..+..|
T Consensus 599 ~~~l~~~l~~~~---~~~v~~~~~~~l~~l~~~~~~~~-~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~ 674 (861)
T 2bpt_A 599 MGLFFRLLEKKD---SAFIEDDVFYAISALAASLGKGF-EKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDF 674 (861)
T ss_dssp HHHHHHHHHSTT---GGGTHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHCCCC---CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHC
T ss_conf 999999974678---87579999999999999976609-99999999999988655667899999999999998745403
Q ss_pred HHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHCCCH------HHHHHHHHHHCCCC-----------HHHHHHH
Q ss_conf 7899999999999918993--779999999999999412910------25775213200563-----------3679899
Q 001582 897 EDSVEIVIEKLLHVTKDAV--PKVSNEAEHCLTVVLSQYDPF------RCLSVIVPLLVTED-----------EKTLVTC 957 (1049)
Q Consensus 897 ~~~~e~iLp~Ll~~~~Ds~--~~V~~aA~~~l~~i~~~~~p~------~~l~vL~p~l~s~~-----------~~~~~~a 957 (1049)
.+|+..+++.+++.+.+.. ..++..+..|+..++..++.. .+++.+...+.... ..++..+
T Consensus 675 ~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~ 754 (861)
T 2bpt_A 675 RRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAV 754 (861)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 11199999999997278655676659999999999998405089999999999999973678999758899999999999
Q ss_pred HHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 999999995219--8899956666999999982599----9789999999999999996-455888410
Q 001582 958 INCLTKLVGRLS--QEELMAQLPSFLPALFEAFGNQ----SADVRKTVVFCLVDIYIML-GKAFLPYLE 1019 (1049)
Q Consensus 958 l~~L~~lie~~~--~~~l~~~L~~iip~L~~~l~D~----~seVRKAAv~clV~l~~~l-Ge~i~p~l~ 1019 (1049)
++.+..++...+ +..+.++++.+++.+.+.+.|. +.+||++|..|+..+...+ |+++.+|+.
T Consensus 755 l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~ 823 (861)
T 2bpt_A 755 LDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYG 823 (861)
T ss_dssp HHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 999999999982677889999999999999987485557869999999999999998828824889872
Done!