BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001583
(1049 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LF41|UBE4_ARATH Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana
GN=PUB1 PE=1 SV=1
Length = 1038
Score = 1657 bits (4292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 813/1050 (77%), Positives = 919/1050 (87%), Gaps = 13/1050 (1%)
Query: 1 MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDL 60
MAT+KPQRSP EIEDIILRKIF VTL E +TD+DPRI YLE+TAAE+LSEGK++ LSRDL
Sbjct: 1 MATSKPQRSPAEIEDIILRKIFYVTLTE-STDSDPRIVYLEMTAAEILSEGKELLLSRDL 59
Query: 61 MERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMI 120
MERVL+DRLSG+F AEPPF YLI C+RRA+DE KKI +MKDKNLRSE+E V KQAKK+
Sbjct: 60 MERVLIDRLSGDFSDAEPPFPYLIGCHRRAYDESKKIQSMKDKNLRSEMEIVTKQAKKLA 119
Query: 121 VSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGG-IDGFGNSTSSGS 179
VSYCRIHL NPD FG+++ + ++N K ++SP+LP IFAEVG G +D FG ++SSG
Sbjct: 120 VSYCRIHLGNPDMFGNSDKPSGGLDNRLKKRNVSPVLPLIFAEVGSGSLDMFG-ASSSGV 178
Query: 180 QCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGV 239
Q PPGFL EFF+++DFD+LD ILK LYE+LR +V+NVS LG+FQ PLRAL YLVS PVG
Sbjct: 179 QAPPGFLDEFFKDSDFDSLDSILKELYEDLRSTVINVSVLGDFQPPLRALKYLVSLPVGA 238
Query: 240 KSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRR 299
KSLV+H+WW+P+ Y+NGR +E+TSILGPFFH+SALPD+ +FKSQPDVGQQCFSEAS RR
Sbjct: 239 KSLVSHEWWVPRGAYMNGRAMELTSILGPFFHISALPDNTLFKSQPDVGQQCFSEASERR 298
Query: 300 PADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEP 359
PADLLSSF+TIK M LY L DVL+ LLK+TDTRE VL++LAEVIN N+SRAHIQV+P
Sbjct: 299 PADLLSSFSTIKNFMNILYSGLHDVLMILLKSTDTRERVLQFLAEVINANASRAHIQVDP 358
Query: 360 LSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEV 419
+SCASSGMFVNLSAVMLRLC+PFLD +LTKRDKIDPKY F RL L LTALHASSEEV
Sbjct: 359 VSCASSGMFVNLSAVMLRLCEPFLDPHLTKRDKIDPKYAFCGHRLKLSDLTALHASSEEV 418
Query: 420 SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPF 479
+EWI K A A+ + + E++LLQS+EATSSS AS G+ A +KY F
Sbjct: 419 TEWIGKDAMANANDAGRENGNESRLLQSKEATSSSSNAS------GQNAK---SATKYTF 469
Query: 480 ICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIE 539
ICECFFMTARVLNLGLLKA SDFKHL QDISR ED LATLKA + Q PS QL L+I+R+E
Sbjct: 470 ICECFFMTARVLNLGLLKALSDFKHLAQDISRGEDNLATLKAMRDQAPSPQLELDISRME 529
Query: 540 KEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACM 599
KE+ELSSQEKLC+EAQILRDGD IQ ALSFYRLM+VWLV LVGGFKMPLP TCPMEF+CM
Sbjct: 530 KELELSSQEKLCHEAQILRDGDFIQRALSFYRLMVVWLVGLVGGFKMPLPSTCPMEFSCM 589
Query: 600 PEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW 659
PEHFVEDAMELLIFASRIPKALDGV LDDFMNFIIMFMASP+Y+RNPYLR+KMVEVLNCW
Sbjct: 590 PEHFVEDAMELLIFASRIPKALDGVPLDDFMNFIIMFMASPEYVRNPYLRAKMVEVLNCW 649
Query: 660 MPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 719
MPR S SSSAT+TLFEGHQ+SLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE
Sbjct: 650 MPRSSSSSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 709
Query: 720 YLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTA 779
YLWQVPSHRNAWR+IAK+EEKGVYLNFLNFL+NDSIYLLDESLNKILE+K IEA+MSNTA
Sbjct: 710 YLWQVPSHRNAWRRIAKDEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKQIEADMSNTA 769
Query: 780 EWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVAS 839
EWE+RP QERQERTRLFHSQENI+RIDMKLANEDV+MLAFTSE+I APFLLPEM+ERVA+
Sbjct: 770 EWEQRPTQERQERTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVAN 829
Query: 840 MLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDG 899
MLNYFLLQLVGPQRKSL+LKDPEKYEFRPKQLLKQIV IYV+LARGDT N+FP AISSDG
Sbjct: 830 MLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVRIYVNLARGDTVNIFPGAISSDG 889
Query: 900 RSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPI 959
RSYNEQLF+A ADVL +IGE+GRIIQEF+ELG KAKAAASEA+DAEAALG+IPDEFLDPI
Sbjct: 890 RSYNEQLFNAGADVLRRIGEEGRIIQEFMELGTKAKAAASEALDAEAALGEIPDEFLDPI 949
Query: 960 QYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIK 1019
QYTLM+DPVILPSSRITVDRP+IQRHLLSD DPFNR+HLT+DMLIP+ ELKAKI+EF+K
Sbjct: 950 QYTLMRDPVILPSSRITVDRPIIQRHLLSDNHDPFNRAHLTSDMLIPDIELKAKIDEFVK 1009
Query: 1020 SQGLKRHGEGLNIQSIKDTIQTTNGDMLID 1049
S K+ G + S K+ IQTTN DMLID
Sbjct: 1010 SHQSKKRTSGED-SSNKERIQTTNSDMLID 1038
>sp|Q9HE05|UFD2_SCHPO Ubiquitin conjugation factor E4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ufd2 PE=2 SV=1
Length = 1010
Score = 359 bits (922), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 291/1023 (28%), Positives = 482/1023 (47%), Gaps = 137/1023 (13%)
Query: 26 LNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLIN 85
LN ++ D YLE +L EG + + + ++ L+ RLS F YL+
Sbjct: 89 LNITLSETDSSKYYLEGFKKDLEEEGSPLLFNENNVDSALLSRLST---TGNNTFSYLLQ 145
Query: 86 CYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEIN 145
+ + K++ KD+N ++ + K ++VSY I + PD F S +
Sbjct: 146 SWSFLYQYKKRLP--KDENQDFKIH-YLSLLKSLLVSYAGIVVMLPDTFNSETID----- 197
Query: 146 NSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLD----PI 201
AEV G +G P FL EF + + + LD P+
Sbjct: 198 ---------------LAEVLIGAEGI----------PLEFLSEFVQRFEHENLDELFIPV 232
Query: 202 LKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIE 261
L+ L +L+ ++NV + ++ +L LVS L W P + N IE
Sbjct: 233 LESL--SLKIGLMNVDTVQ--MNVMQIILQLVSLKPIALLLPKLPSWNPTN---NAGEIE 285
Query: 262 MTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDL 321
+ LG +S+L ++F DV + FS ++ R ++ SS +++K M L
Sbjct: 286 YKTFLG---RISSL---SVFTQ--DVASRYFSNSTERSAQNISSSISSLKLTMSTYQDVL 337
Query: 322 GDVLLALLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCD 380
+ L++ +T RE+VL++ A V+N N R IQV S +N S V+ RL +
Sbjct: 338 FQIFNTLIRTSTSLRESVLDFFAMVVNANHKRQSIQVNHFDITSDACMLNFSHVLSRLSE 397
Query: 381 PFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDG 440
PFLD +K D++ +Y + R+D++ T L+A + + +K A+GS +F
Sbjct: 398 PFLDIGCSKIDRVQVEYFRRNPRVDIKEETKLNADQKASESFYSK----PAEGSNNF--- 450
Query: 441 ENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFS 500
I + FF+ + G+ F
Sbjct: 451 ---------------------------------------ISDIFFLNLAFHHYGVNATFK 471
Query: 501 DFKHLVQDISRAEDTLATLKATQ----GQTPSSQLNLEITRIEKEIELSSQEKLCYEAQI 556
+ LVQ I +E L+ Q G +++L +++R+++ ++L CYE +
Sbjct: 472 ALEQLVQSIRDSEKLKERLETEQQNMSGSFQATRLTAQLSRLDQRLDLDRSFVHCYEIML 531
Query: 557 LRDGDLIQHALSFYRLMIVWLVDLVGG---------FKMPLPDTCPMEFACMPEHFVE-- 605
+ D + SF + +WL L G +P + P F C+PE+F+E
Sbjct: 532 TQTSD-TSRSFSFLNFVAIWLSRLADGQSSTYPKMPLSLPFNENAPEAFKCLPEYFIETI 590
Query: 606 -DAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRS 664
D M L S L L+ F + F+ YI+NPYLR+K+ E+L +
Sbjct: 591 TDYMLSLFKTSSSTLTLHS--LEPLCEFCVSFLTQANYIKNPYLRAKLAEILYFGVQTHV 648
Query: 665 GSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQV 724
G S + +++ +L+ L+ Y++IE TG TQFYDKFNIR I E+ +W+
Sbjct: 649 GRSELLLDVVRTSKVATRWLLPALMAFYIEIESTGQSTQFYDKFNIRFYICEVFRTIWKQ 708
Query: 725 PSHRNAWRQIAKEEEKGV--YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWE 782
P++ + ++ +E++ + ++ F+ ++ND+ YLLDE+L K+ E+ +++ +++ A
Sbjct: 709 PAY---FGKLEQEQKTNLPFFVKFVALMLNDATYLLDEALLKLTEIHNLQSLLAD-AISN 764
Query: 783 RRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLN 842
Q QE + E +L NE + ML + I F E+++R+A+MLN
Sbjct: 765 SNSNQNVQESQSNLAAAERQASTYCQLGNETIFMLKLFTSSIPKAFCAVEIVDRLAAMLN 824
Query: 843 YFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSY 902
Y L L GP+ +L ++DP KY F K LL I +Y++L + F A++ DGRSY
Sbjct: 825 YNLQALCGPKCSNLKVEDPTKYHFNAKTLLSIIFDVYLNLC---NEPAFVEAVAHDGRSY 881
Query: 903 NEQLFSAAADVL----WKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDP 958
++++F A ++ K D I+EF+ + +A + E +GDIPD FLDP
Sbjct: 882 SKEIFERATSIMTKHNLKSSFDIEAIKEFVN---RVEAFRLQEATEEEDMGDIPDYFLDP 938
Query: 959 IQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 1018
+ +T+MKDPV+LP S I++DR I+ HLLSDATDPFNR+ LT D + PN L+ +I F+
Sbjct: 939 LMFTIMKDPVVLPRSGISIDRSTIKAHLLSDATDPFNRTPLTLDDVTPNDTLREEINTFL 998
Query: 1019 KSQ 1021
KS+
Sbjct: 999 KSK 1001
>sp|Q9ES00|UBE4B_MOUSE Ubiquitin conjugation factor E4 B OS=Mus musculus GN=Ube4b PE=1 SV=3
Length = 1173
Score = 358 bits (920), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 267/876 (30%), Positives = 426/876 (48%), Gaps = 102/876 (11%)
Query: 182 PPGFLKEFF------EEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSF 235
P GF++E EE PIL+GL + L F+ PL AL L
Sbjct: 369 PYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLESDY---FKYPLMALGELCET 425
Query: 236 PVG-----VKSLVNHQWWIPKSVYL-NGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQ 289
G + + W+PKS+ +GR ++ S LG FF S + V +
Sbjct: 426 KFGKTHPMCNLVASLPLWLPKSLSPGSGRELQRLSYLGAFFSFSVFAE-----DDAKVVE 480
Query: 290 QCFSEASTRRPADLLSSFTTIKTVMRGLYKDLG-----DVLLALLKNTDTRENVLEYLAE 344
+ FS PA L + + ++ Y +LG +L ++L N +TRE L Y+A
Sbjct: 481 KYFSG-----PAITLENTRVVSQSLQH-YLELGRQELFKILHSILLNGETREAALSYMAA 534
Query: 345 VINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFY-SSR 403
++N N +A +Q + ++ G +NL V+ +L + K + +DP Y+F+ R
Sbjct: 535 LVNANMKKAQMQADDRLVSTDGFMLNLLWVLQQL------STKIKLETVDPTYIFHPRCR 588
Query: 404 LDL-RSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSL 462
+ L T ++A+ E+V+E + E SEP
Sbjct: 589 ITLPNDETRINATMEDVNERLT------------------------ELYGDQPPFSEPKF 624
Query: 463 PAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKAT 522
P ECFF+T +L +L + + ++ I T+ LK
Sbjct: 625 PT-----------------ECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRTVEDLKNN 667
Query: 523 QGQTPSSQLNLE----ITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLV 578
+ Q S L + R + +++ + K C +A +L D ++ L+FY L+I ++
Sbjct: 668 ESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLL-DESFLRRCLNFYGLLIQLML 726
Query: 579 DLVG----GFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRI-PKALDGVLLDDFMNFI 633
++ +PL P FA +PE +VED E L F + P+ L D + F+
Sbjct: 727 RILDPAYPDVTLPLNSEVPKVFAALPEFYVEDVAEFLFFIVQYSPQVLYEPCTQDIVMFL 786
Query: 634 IMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYV 693
++ + + YIRNPYL +K+VEV+ P + + E H +S + LV +L+K Y
Sbjct: 787 VVMLCNQNYIRNPYLVAKLVEVMFMTNPSVQPRTQKFFEMIENHPLSTKLLVPSLMKFYT 846
Query: 694 DIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLIND 753
D+E TG+ ++FYDKF IR++I+ + + LWQ +H + + ++ ++ ++N LIND
Sbjct: 847 DVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQ--FVRYINMLIND 904
Query: 754 SIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANED 813
+ +LLDESL + + ++ EM N +W++ P ++Q R E + R + LA E
Sbjct: 905 TTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLALATET 964
Query: 814 VSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLK 873
V M ++Q+ PFL PE+ R+A+MLN+ L QL GP+ + L +++PEKY F PK+LL
Sbjct: 965 VDMFHLLTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLD 1024
Query: 874 QIVCIYVHL--ARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRI-IQEFIEL 930
Q+ IY+ L AR F AI+ D RSY+++LF + K G I I++F L
Sbjct: 1025 QLTDIYLQLDCAR------FAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLL 1078
Query: 931 GAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA 990
K + ++ AE D PDEF DP+ TLM DPV LPS + +DR +I RHLL+
Sbjct: 1079 AEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSP 1137
Query: 991 TDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKRH 1026
TDPFNR LT ML P ELK +I+ +++ + H
Sbjct: 1138 TDPFNRQMLTESMLEPVPELKEQIQAWMREKQSSDH 1173
>sp|O95155|UBE4B_HUMAN Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1
Length = 1302
Score = 358 bits (918), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 273/876 (31%), Positives = 431/876 (49%), Gaps = 102/876 (11%)
Query: 182 PPGFLKEFF------EEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSF 235
P GF++E EE PIL+GL + L+ F+ PL AL L
Sbjct: 498 PYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLDSDY---FKYPLMALGELCET 554
Query: 236 PVG----VKSLVNH-QWWIPKSVYLN-GRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQ 289
G V +LV + W+PKS+ GR ++ S LG FF S + + V +
Sbjct: 555 KFGKTHPVCNLVASLRLWLPKSLSPGCGRELQRLSYLGAFFSFSVFAEDDV-----KVVE 609
Query: 290 QCFSEASTRRPADLLSSFTTIKTVMRGLYKDLG-----DVLLALLKNTDTRENVLEYLAE 344
+ FS PA L + + ++ Y +LG +L ++L N +TRE L Y+A
Sbjct: 610 KYFSG-----PAITLENTRVVSQSLQH-YLELGRQELFKILHSILLNGETREAALSYMAA 663
Query: 345 VINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYS-SR 403
V+N N +A +Q + ++ G +N V+ +L + K + +DP Y+F+ R
Sbjct: 664 VVNANMKKAQMQTDDRLVSTDGFMLNFLWVLQQL------STKIKLETVDPTYIFHPRCR 717
Query: 404 LDL-RSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSL 462
+ L T ++A+ E+V++W+ E SEP
Sbjct: 718 ITLPNDETRVNATMEDVNDWLT------------------------ELYGDQPPFSEPKF 753
Query: 463 PAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKAT 522
P ECFF+T +L +L + + ++ I T+ LK
Sbjct: 754 PT-----------------ECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRTVEDLKNN 796
Query: 523 QGQTPSSQLNLE----ITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLV 578
+ Q S L + R + +++ + K C +A +L D ++ L+FY L+I L+
Sbjct: 797 ESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLL-DESFLRRCLNFYGLLIQLLL 855
Query: 579 DLVG----GFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRI-PKALDGVLLDDFMNFI 633
++ +PL P FA +PE +VED E L F + P+AL D + F+
Sbjct: 856 RILDPAYPDITLPLNSDVPKVFAALPEFYVEDVAEFLFFIVQYSPQALYEPCTQDIVMFL 915
Query: 634 IMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYV 693
++ + + YIRNPYL +K+VEV+ P + + E H +S + LV +L+K Y
Sbjct: 916 VVMLCNQNYIRNPYLVAKLVEVMFMTNPAVQPRTQKFFEMIENHPLSTKLLVPSLMKFYT 975
Query: 694 DIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLIND 753
D+E TG+ ++FYDKF IR++I+ + + LWQ +H + + ++ ++ ++N LIND
Sbjct: 976 DVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQ--FVRYINMLIND 1033
Query: 754 SIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANED 813
+ +LLDESL + + ++ EM N +W++ P ++Q R E + R + LA E
Sbjct: 1034 TTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLALATET 1093
Query: 814 VSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLK 873
V M ++Q+ PFL PE+ R+A+MLN+ L QL GP+ + L +++PEKY F PK+LL
Sbjct: 1094 VDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLD 1153
Query: 874 QIVCIYVHL--ARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRI-IQEFIEL 930
Q+ IY+ L AR F AI+ D RSY+++LF + K G I I++F L
Sbjct: 1154 QLTDIYLQLDCAR------FAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLL 1207
Query: 931 GAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA 990
K + ++ AE D PDEF DP+ TLM DPV LPS I +DR +I RHLL+
Sbjct: 1208 AEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSP 1266
Query: 991 TDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKRH 1026
TDPFNR LT ML P ELK +I+ +++ + H
Sbjct: 1267 TDPFNRQTLTESMLEPVPELKEQIQAWMREKQNSDH 1302
>sp|Q5R9G3|UBE4A_PONAB Ubiquitin conjugation factor E4 A OS=Pongo abelii GN=UBE4A PE=2 SV=2
Length = 1066
Score = 333 bits (853), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 306/1074 (28%), Positives = 486/1074 (45%), Gaps = 177/1074 (16%)
Query: 17 ILRKIFLVTLNEATTDADP----------RIAYLELTAAELLSEGKDM----RLSRDLME 62
++++IFL+TL+ ++DP R YLE A EL E +D + + L
Sbjct: 87 MIQRIFLITLD----NSDPSLKSGNGIPSRCVYLEEMAVEL--EDQDWLDMGNVEQALFA 140
Query: 63 RVLVD---------------RLSGNFPAAEPP-FLYLINCYRRAHDELKKIGNMKDKNLR 106
R+L+ LS + A E F YL +C++RA +E+ K+
Sbjct: 141 RLLLQDPGNHLINMTSSTTLNLSADRDAGERHIFCYLYSCFQRAKEEITKVP-------- 192
Query: 107 SELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGG 166
L Q + + VS R L P+ + N + L+ + + G
Sbjct: 193 ENLLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIH-------------EQLVDLMLEAIQG 239
Query: 167 GIDGFGNSTSSGSQCPPGFLKEFFEEADFD----TLDPILKGLYENLRGSVLNVSALGNF 222
F + T FL+E E D T ++ +++ L G + ++
Sbjct: 240 A--HFEDVTE--------FLEEVIEALILDEEVRTFSEVMIPVFDILLGRIKDLELCQIL 289
Query: 223 QQP-LRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIF 281
L LLY K V ++ PK NG++ + T +LG ++S L
Sbjct: 290 LYAYLDILLYFTRQKDMAKVFV--EYIQPKDP-TNGQMYQKT-LLGVILNISCL------ 339
Query: 282 KSQPDVGQQ--CFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENV 338
P V + F S P ++ I M ++ + +L LL+ + +T+ +
Sbjct: 340 LKTPGVVENHGYFLNPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHCI 399
Query: 339 LEYLAEVINRNSSRAHIQVEPLS------CASSGMFVNLSAVMLRLCDPFLDANLTKRDK 392
L +L ++ N+ R I + AS F+NL A +L+LC PF ++
Sbjct: 400 LSWLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLT 459
Query: 393 IDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATS 452
+P Y +L L+ ++ +G D E L+
Sbjct: 460 FNPTYC---------ALKELNDEERKIKNVHMRG-----------LDKETCLI------- 492
Query: 453 SSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRA 512
EP P Y + E +T L LG + + Q++ R
Sbjct: 493 --PAVQEPKFPQN-----------YNLVTENLALTEYTLYLGFHRLHDQMVKINQNLHRL 539
Query: 513 EDTLATLKATQGQTPSS-QLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYR 571
+ +A A Q +P++ L + R+ I LS++ + E Q+L Q+ L+
Sbjct: 540 Q--VAWRDAQQSSSPAADSLREQFERL-MTIYLSTKTAMT-EPQML------QNCLNLQV 589
Query: 572 LMIVWLVDLVGG--------FKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDG 623
M V LV L G PLPD A +PE F ++ + LIF R D
Sbjct: 590 SMAVLLVQLAIGNEGSQPIELTFPLPDGYS-SLAYVPEFFADNLGDFLIFLRRFA---DD 645
Query: 624 VL------LDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSA-TATLFEG 676
+L L+ ++FI +F S + ++NP+LR+K+ EVL MP + + +++F
Sbjct: 646 ILETSADSLEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPNPLVSSVFHR 705
Query: 677 HQMSLEY-----LVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAW 731
++ + L L+K++VDIEFTG QF KFN R + +L Y+W ++R +
Sbjct: 706 KRVFCNFQYAPQLAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDTYRESI 765
Query: 732 RQIAKEEEKGV-------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERR 784
+ +A K + +L FLN L+ND+I+LLDE++ + ++K+ + E + EW+
Sbjct: 766 KDLADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWDSL 824
Query: 785 PAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYF 844
+ R+E+ + R ++NE + LAF + +I + F+ P + ER+ SMLNYF
Sbjct: 825 TPEARREKEAGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYF 884
Query: 845 LLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNE 904
L LVGP+ +L +KD +++F+P+QL+ I IY++L GD +N F A + DGRSY+
Sbjct: 885 LQHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYSP 941
Query: 905 QLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLM 964
LF+ VL KI + G +I F L + K+ A E D DEFLDPI TLM
Sbjct: 942 TLFAQTVRVLKKINKPGNMIVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLM 1001
Query: 965 KDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 1018
DPV+LPSSR+TVDR I RHLLSD TDPFNRS LT D + PNTELK KI+ ++
Sbjct: 1002 CDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 1055
>sp|Q14139|UBE4A_HUMAN Ubiquitin conjugation factor E4 A OS=Homo sapiens GN=UBE4A PE=1 SV=2
Length = 1066
Score = 332 bits (852), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 306/1074 (28%), Positives = 485/1074 (45%), Gaps = 177/1074 (16%)
Query: 17 ILRKIFLVTLNEATTDADP----------RIAYLELTAAELLSEGKDM----RLSRDLME 62
++++IFL+TL+ ++DP R YLE A EL E +D + + L
Sbjct: 87 MIQRIFLITLD----NSDPSLKSGNGIPSRCVYLEEMAVEL--EDQDWLDMSNVEQALFA 140
Query: 63 RVLVD---------------RLSGNFPAAEPP-FLYLINCYRRAHDELKKIGNMKDKNLR 106
R+L+ LS + A E F YL +C++RA +E+ K+
Sbjct: 141 RLLLQDPGNHLINMTSSTTLNLSADRDAGERHIFCYLYSCFQRAKEEITKVP-------- 192
Query: 107 SELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGG 166
L Q + + VS R L P+ + N + L+ + + G
Sbjct: 193 ENLLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIH-------------EQLVDLMLEAIQG 239
Query: 167 GIDGFGNSTSSGSQCPPGFLKEFFEEADFD----TLDPILKGLYENLRGSVLNVSALGNF 222
F + T FL+E E D T ++ +++ L G + ++
Sbjct: 240 A--HFEDVTE--------FLEEVIEALILDEEVRTFPEVMIPVFDILLGRIKDLELCQIL 289
Query: 223 QQP-LRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIF 281
L LLY K V ++ PK NG++ + T +LG +S L
Sbjct: 290 LYAYLDILLYFTRQKDMAKVFV--EYIQPKDP-TNGQMYQKT-LLGVILSISCL------ 339
Query: 282 KSQPDVGQQ--CFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENV 338
P V + F S P ++ I M ++ + +L LL+ + +T+ +
Sbjct: 340 LKTPGVVENHGYFLNPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHCI 399
Query: 339 LEYLAEVINRNSSRAHIQVEPLS------CASSGMFVNLSAVMLRLCDPFLDANLTKRDK 392
L +L ++ N+ R I + AS F+NL A +L+LC PF ++
Sbjct: 400 LSWLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLT 459
Query: 393 IDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATS 452
+P Y +L L+ ++ +G D E L+
Sbjct: 460 FNPTYC---------ALKELNDEERKIKNVHMRG-----------LDKETCLI------- 492
Query: 453 SSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRA 512
EP P Y + E +T L LG + + Q++ R
Sbjct: 493 --PAVQEPKFPQN-----------YNLVTENLALTEYTLYLGFHRLHDQMVKINQNLHRL 539
Query: 513 EDTLATLKATQGQTPSS-QLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYR 571
+ +A A Q +P++ L + R+ I LS++ + E Q+L Q+ L+
Sbjct: 540 Q--VAWRDAQQSSSPAADNLREQFERL-MTIYLSTKTAMT-EPQML------QNCLNLQV 589
Query: 572 LMIVWLVDLVGG--------FKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDG 623
M V LV L G PLPD A +PE F ++ + LIF R D
Sbjct: 590 SMAVLLVQLAIGNEGSQPIELTFPLPDGYS-SLAYVPEFFADNLGDFLIFLRRFA---DD 645
Query: 624 VL------LDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSA-TATLFEG 676
+L L+ ++FI +F S + ++NP+LR+K+ EVL MP + + +++F
Sbjct: 646 ILETSADSLEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPNPLVSSVFHR 705
Query: 677 HQMSLEY-----LVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAW 731
++ + L L+K++VDIEFTG QF KFN R + +L Y+W ++R +
Sbjct: 706 KRVFCNFQYAPQLAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDTYRESI 765
Query: 732 RQIAKEEEKGV-------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERR 784
+ +A K + +L FLN L+ND+I+LLDE++ + ++K+ + E + EW+
Sbjct: 766 KDLADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWDSL 824
Query: 785 PAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYF 844
+ R+E+ + R ++NE + LAF + +I + F+ P + ER+ SMLNYF
Sbjct: 825 TPEARREKEAGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYF 884
Query: 845 LLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNE 904
L LVGP+ +L +KD +++F+P+QL+ I IY++L GD +N F A + DGRSY+
Sbjct: 885 LQHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYSP 941
Query: 905 QLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLM 964
LF+ VL KI + G +I F L + K+ A E D DEFLDPI TLM
Sbjct: 942 TLFAQTVRVLKKINKPGNMIMAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLM 1001
Query: 965 KDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 1018
DPV+LPSSR+TVDR I RHLLSD TDPFNRS LT D + PNTELK KI+ ++
Sbjct: 1002 CDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 1055
>sp|A5PKG6|UBE4A_BOVIN Ubiquitin conjugation factor E4 A OS=Bos taurus GN=UBE4A PE=2 SV=1
Length = 1067
Score = 330 bits (847), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 302/1077 (28%), Positives = 482/1077 (44%), Gaps = 183/1077 (16%)
Query: 17 ILRKIFLVTLNEATTDADP----------RIAYLELTAAELLSEGKDM----RLSRDLME 62
++++IFL+TL+ ++DP R YLE A +L E +D + + +
Sbjct: 87 MIQRIFLITLD----NSDPSLKSGNGIPSRCVYLEEMAVDL--EDQDWLDMNNVEQAVFT 140
Query: 63 RVLVD---------------RLSGNFPAAEPP-FLYLINCYRRAHDELKKIGNMKDKNLR 106
R+L+ LS + A E F YL +C++RA +E+ K+
Sbjct: 141 RLLLQDPGNHLINMTSSTTLNLSADRDAGEKHIFCYLYSCFQRAKEEITKVP-------- 192
Query: 107 SELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGG 166
L Q + + VS R L P+ + N + ++ + A +GG
Sbjct: 193 ENLLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIHEQLVD------------LMVEAILGG 240
Query: 167 GIDGFGNSTSSGSQCPPGFLKEFFEEADFD--------TLDPILKGLYENLRGSVLNVSA 218
+ FL E E D + P+ L ++ L
Sbjct: 241 HFESVAE-----------FLDEVIEALILDEEVRTFPEVMIPVFDILSSRIKDLELCQIL 289
Query: 219 LGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDH 278
L + L LLY K V+ +I NG++ + T +LG ++S L
Sbjct: 290 LYAY---LDILLYFTKQKDMAKVFVD---YIQPKDPSNGQMYQKT-LLGVILNISCL--- 339
Query: 279 AIFKSQPDV--GQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTR 335
P V F S P ++ I M ++ + +L LL+ + +T+
Sbjct: 340 ---LKTPGVIENHGYFLNPSRSSPQEIKVQEANIHQFMARYHEKIYQMLKNLLQLSPETK 396
Query: 336 ENVLEYLAEVINRNSSRAHIQVEPLS------CASSGMFVNLSAVMLRLCDPFLDANLTK 389
+L +L ++ N+ R I + AS F+NL A +L+LC PF ++
Sbjct: 397 HCILSWLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSR 456
Query: 390 RDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQE 449
+P Y +L L+ ++ +G D E L+
Sbjct: 457 LLTFNPTYC---------ALKELNDEERKIKNVHMRG-----------LDKETCLI---- 492
Query: 450 ATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDI 509
EP P Y + E +T L LG + + Q++
Sbjct: 493 -----PAVQEPKFPQN-----------YNLVTENLVLTEYTLYLGFHRLHDQMVKINQNL 536
Query: 510 SRAEDTLATLKATQGQTPSS-QLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALS 568
R + +A A Q +P++ L + R+ + LS++ + E Q+L Q+ L+
Sbjct: 537 HRLQ--VAWRDAQQSSSPAADNLREQFERL-MTVYLSTKTAMT-EPQML------QNCLN 586
Query: 569 FYRLMIVWLVDLVGG--------FKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKA 620
M V LV L G PLPD A +PE F ++ + LIF R
Sbjct: 587 LQVSMAVLLVQLAIGNEGSQLMELTFPLPDGYS-SLAYVPEFFADNLGDFLIFLRRFA-- 643
Query: 621 LDGVL------LDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSA-TATL 673
D +L L+ ++FI +F S + ++NP+LR+K+ EVL MP + + +++
Sbjct: 644 -DDILETSADSLEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHMDQTPNPLVSSV 702
Query: 674 FEGHQMSLEY-----LVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHR 728
F ++ + L L+K++VDIEFTG QF KFN R + +L+Y+W ++R
Sbjct: 703 FHRKRVFCNFPYASHLAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILKYMWGTDTYR 762
Query: 729 NAWRQIAKEEEKGV-------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEW 781
+ + +A K + +L FLN L+ND+I+LLDE++ + ++K+ + E + EW
Sbjct: 763 ESIKDLADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEW 821
Query: 782 ERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASML 841
+ + R+E+ + R ++NE + LAF + +I + F+ P + ER+ SML
Sbjct: 822 DNLTPEARREKEAGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISML 881
Query: 842 NYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRS 901
NYFL LVGP+ +L +KD +++F+P+QL+ I IY++L GD +N F A + DGRS
Sbjct: 882 NYFLQHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRS 938
Query: 902 YNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQY 961
Y+ LF+ VL KI + G +I F L + K+ A E D DEFLDPI
Sbjct: 939 YSPTLFAQTVRVLKKINKPGNMIVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMS 998
Query: 962 TLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 1018
TLM DPV+LPSSR+TVDR I RHLLSD TDPFNRS LT D + PNTELK KI+ ++
Sbjct: 999 TLMSDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 1055
>sp|Q6P7A2|UBE4A_RAT Ubiquitin conjugation factor E4 A OS=Rattus norvegicus GN=Ube4a PE=2
SV=1
Length = 1066
Score = 328 bits (840), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 304/1073 (28%), Positives = 486/1073 (45%), Gaps = 175/1073 (16%)
Query: 17 ILRKIFLVTLNEATTDADP----------RIAYLELTAAELLSEGKDM----RLSRDLME 62
++++IFL+TL+ ++DP R YLE A EL E +D + + +
Sbjct: 87 MIQRIFLITLD----NSDPNLKSGNGIPSRCVYLEEMAVEL--EDQDWLDMSNVEQAIFA 140
Query: 63 RVLVD---------------RLSGNFPAAEPP-FLYLINCYRRAHDELKKIGNMKDKNLR 106
R+L+ LS + A E F YL +C++RA +E+ K+
Sbjct: 141 RLLLQDPGNHLISMTSSATLNLSADRDAGERHIFCYLYSCFQRAKEEITKVP-------- 192
Query: 107 SELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGG 166
L Q + + VS R L P+ + N + L+ + + G
Sbjct: 193 ENLLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIH-------------EQLVDLMLEAIQG 239
Query: 167 GIDGFGNSTSSGSQCPPGFLKEFFEEADFD----TLDPILKGLYENLRGSVLNVSALGNF 222
F + T FL+E E D T ++ +++ L G + ++
Sbjct: 240 A--HFEDVTE--------FLEEVIEALLLDEEVRTFPEVMIPVFDILLGRIKDLELC--- 286
Query: 223 QQPLRALLYLVSFPVGVKSL--VNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAI 280
Q L A L ++ + K + V ++ PK NG++ + T +LG ++S L
Sbjct: 287 QILLYAYLDILLYFTRQKDMAKVFLEYIQPKDPS-NGQMYQKT-LLGVILNISCL----- 339
Query: 281 FKSQPDVGQQ--CFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTREN 337
P V + F S P ++ I M ++ + +L LL+ + +T+
Sbjct: 340 -LKTPGVVENHGFFLNPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHG 398
Query: 338 VLEYLAEVINRNSSRAHIQVEPLS------CASSGMFVNLSAVMLRLCDPFLDANLTKRD 391
+L +L ++ N+ R I + AS F+NL A +L+LC PF ++
Sbjct: 399 ILFWLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLL 458
Query: 392 KIDPKYVFYSSRLDL-RSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEA 450
+P Y D R + ++H D E L+
Sbjct: 459 TFNPTYCVLKDLNDEERKIKSVHMRG---------------------LDKETCLI----- 492
Query: 451 TSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDIS 510
EP P Y + E +T L LG + + Q++
Sbjct: 493 ----PAVQEPVFPQS-----------YNLVTENLALTEYTLYLGFHRLHDQMVKINQNLH 537
Query: 511 RAEDTLATLKATQGQTPSS-QLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSF 569
R + +A A Q +P++ L + R+ I LS++ + E Q+L Q+ L+
Sbjct: 538 RLQ--VAWRDAQQSSSPAADNLREQFERL-MTIYLSTKTAMT-EPQML------QNCLNL 587
Query: 570 YRLMIVWLVDLVGG--------FKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKAL 621
M V LV L G PLPD A +PE F ++ + LIF R + +
Sbjct: 588 QVSMAVLLVQLAIGNEGSQPIELSFPLPDGYS-SLAYVPEFFADNLGDFLIFLRRFAEDI 646
Query: 622 ---DGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSA-TATLFEGH 677
L+ ++FI +F S + ++NP+LR+K+ EVL MP + S +++F
Sbjct: 647 LETSADSLEHVLHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPSPLVSSVFHRK 706
Query: 678 QMSLEY-----LVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWR 732
++ + L L+K++VDIEFTG QF KFN R + +L Y+W S+R + +
Sbjct: 707 RVFCNFPYAPQLSEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDSYRESIK 766
Query: 733 QIAKEEEKGV-------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRP 785
+A K + +L FLN L+ND+I+LLDE++ + ++K+ + E + EWE
Sbjct: 767 DLADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWESLT 825
Query: 786 AQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFL 845
+ R+E+ + R ++NE + L+F + +I + F+ P + ER+ SMLNYFL
Sbjct: 826 PEARREKEAGLQMFGQLARFHNIMSNETIGTLSFLTSEIKSLFVHPFLAERIISMLNYFL 885
Query: 846 LQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQ 905
LVGP+ +L +KD +++F+P+QL+ I IY++L GD +N F A + DGRSY+
Sbjct: 886 QHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYSPT 942
Query: 906 LFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMK 965
LF+ VL KI + G +I F L + K+ A E D DEFLDPI TLM
Sbjct: 943 LFAQTVRVLKKINKPGNMIVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMS 1002
Query: 966 DPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 1018
DPV+LPSSR+TVD I RHLLSD TDPFNRS LT D + PNTELK KI+ ++
Sbjct: 1003 DPVVLPSSRVTVDGSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 1055
>sp|P54860|UFD2_YEAST E4 ubiquitin-protein ligase UFD2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=UFD2 PE=1 SV=3
Length = 961
Score = 301 bits (770), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 286/1053 (27%), Positives = 474/1053 (45%), Gaps = 149/1053 (14%)
Query: 13 IEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGN 72
IEDI+ + TTD Y L +E + +G L D ++ +L+ +L+ N
Sbjct: 4 IEDIL----------QITTDPSDTRGY-SLLKSEEVPQGS--TLGVDFIDTLLLYQLTEN 50
Query: 73 FPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPD 132
+ PF YL +C+RR + K+I K+K L + ++ ++++ Y + L +
Sbjct: 51 -EKLDKPFEYLNDCFRRNQQQ-KRI--TKNKPNAESLHSTFQEIDRLVIGYGVVALQIEN 106
Query: 133 FFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEE 192
F + NY + G + + T SQ + E
Sbjct: 107 FCMNGAFINY---------------------ITGIVSNVNSYTDFLSQI---IQRAILEG 142
Query: 193 ADFDTLDPILKGLYENLRGSV----LNVSALGNFQQPLRALLYLVSF-PVGVKSLVNHQW 247
D L+ + L E V LN S + N L V+F P+ +
Sbjct: 143 TALDLLNAVFPTLLEYCNKHVSHFDLNESVIYN--NVLTIFELFVTFKPIAEIFTKIDGF 200
Query: 248 WIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSF 307
+ S + E +ILGP +S + + V + + + R
Sbjct: 201 FADYSC--KPQDFERKTILGPILSLSPI--------EAAVAIRNYGDNLLRSKQQTAMIH 250
Query: 308 TTIKTVMRGLYKDLGDVLLALLKNT-DTRENVLEYLAEVINRNSSRAHIQVEPLSCASSG 366
+++ + + L ++ L++ + ++R +++ Y A + N+N R +S+G
Sbjct: 251 ESLQAEHKVVIDRLFFIVDKLVRGSLNSRTDMISYFAHIANKNHLRRADHPPFKELSSNG 310
Query: 367 MFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSR-LDLRSLTALHASSEEVSEWINK 425
N++ +++R PFLD + K DKID Y S +DL T L++ +E + +K
Sbjct: 311 FMSNITLLLVRFSQPFLDISYKKIDKIDANYFNNPSLFIDLSGETRLNSDFKEADAFYDK 370
Query: 426 GNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFF 485
N AD SK FI +CFF
Sbjct: 371 -NRKTAD------------------------------------------SKPNFISDCFF 387
Query: 486 MTARVLNLGL-------------LKAFSDFKHLVQDISRAEDTLATLKATQ--------G 524
+T L+ GL +KA + V+ I+ D A Q
Sbjct: 388 LTLTYLHYGLGGTLSFEEKMGSEIKALKEEIEKVKKIAANHDVFARFITAQLSKMEKALK 447
Query: 525 QTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGF 584
T S + L+ + ++L + +C + L +H F ++ + + D +G
Sbjct: 448 TTESLRFALQGFFAHRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVE 507
Query: 585 KMPLPD----TCPMEFACMPEHFVEDAMELLIFASRIPKA--LDGVLLDDFMNFIIMFMA 638
+ D P+ F PE VE + ++ S+ + L F+ F M +
Sbjct: 508 NVDNADFLRAHAPVPFKYYPEFVVEGPVNYSLYISKYQTSPIFRNPRLGSFVEFTTMVLR 567
Query: 639 SPKYIRNPYLRSKMVEVLNCW-MPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEF 697
P+ + NP+L+ K+V++L+ MP S +FE ++ + L+ LL YV +E
Sbjct: 568 CPELVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLYALLDFYVIVEK 627
Query: 698 TGSHTQFYDKFNIRHNIAELLEYLW-QVPSHRNA--WRQIAKEEEKGVYLNFLNFLINDS 754
TGS +QFYDKFN R++I+ +LE L+ ++PS++N W+ + ++ F+ ++ND
Sbjct: 628 TGSSSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQS---QNNADFFVRFVARMLNDL 684
Query: 755 IYLLDESLNKILELKVIEAEMSNTAEWE--RRPAQERQERTRLFHSQENIIRIDMKLANE 812
+LLDE L+ + E+ I+ E+ N A R ++++ +TRL S + LA++
Sbjct: 685 TFLLDEGLSNLAEVHNIQNELDNRARGAPPTREEEDKELQTRL-ASASRQAKSSCGLADK 743
Query: 813 DVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLL 872
+ + S+ I A F+ PE++ R+ASMLNY L LVGP+ L +KDP+ Y F PK LL
Sbjct: 744 SMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLESLVGPKCGELKVKDPQSYSFNPKDLL 803
Query: 873 KQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIE--L 930
K + +Y++L+ Q+ F +A++ D RS+N LF A D+L + + G EFIE L
Sbjct: 804 KALTTVYINLSE---QSEFISAVAKDERSFNRNLFVRAVDILGR--KTGLASPEFIEKLL 858
Query: 931 GAKAKAAASEAMDAEAAL--GDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS 988
KA D E L GD+PDEFLDP+ YT+MKDPVILP+S++ +DR I+ HLLS
Sbjct: 859 NFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS 918
Query: 989 DATDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 1021
D+TDPFNR L + + PN EL+ KI F K +
Sbjct: 919 DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQK 951
>sp|Q09349|UBE4_CAEEL Probable ubiquitin conjugation factor E4 OS=Caenorhabditis elegans
GN=ufd-2 PE=2 SV=1
Length = 980
Score = 231 bits (588), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 215/859 (25%), Positives = 383/859 (44%), Gaps = 109/859 (12%)
Query: 191 EEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKS--------- 241
+E D D + ++ LR ++ N + +R +L +++ + ++
Sbjct: 192 DECDEDAITETFNPIFGILRSGIICQRFEDNKDEIVRQILRVMNLLLSIRLPSNGPRPLS 251
Query: 242 --LVNHQWWIPK-SVYLNGRVIEMTSILGPFFHV-----SALPDHAIFKSQPDVGQQCFS 293
LVN + ++P S + GR + S LGPFF + P+H +F + ++
Sbjct: 252 NLLVNREDFLPTPSEKIQGREFGLMSFLGPFFSYGLESSARRPNHRVFVDCEEDARKYDG 311
Query: 294 EASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRA 353
+T + I+T++ L +L L + +R L ++A +I+ N R
Sbjct: 312 SVNTEQKL-YFQRMDPIRTMLHQL-------MLPLASDQGSRNKTLRWIATIISTNDIRT 363
Query: 354 HIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALH 413
+P N +VM Y+F S ++DL + +
Sbjct: 364 RSHYDPSDVLCDHYMTNFLSVM---------------------YMF-SEKIDLSKIIVDY 401
Query: 414 ASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGG 473
I+K K D SG + S A RP
Sbjct: 402 PFLPSSLINISKETRLKMD--------------------ESGAVAFASQFADRP------ 435
Query: 474 KSKYPFICECFFMT---ARVLNLGLLKAFSDF----KHLVQDISRAEDTLATLKATQGQT 526
+Y F CFF+T R++ L+ S++ K L I+ ++ L T+ +
Sbjct: 436 -DEYHFSTVCFFLTIAAQRLVIPPLMNQISEYSRHLKELKHKINALKEKLNTVSGFERAE 494
Query: 527 PSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKM 586
+LN E + +L S+ LC + Q +D L+ ++ F + ++++L+
Sbjct: 495 VEKKLNYET----EHWKLMSRHLLCVKTQA-QDPALMASSMDFVDKQMKFILNLLCDNLD 549
Query: 587 ------PLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASP 640
LP F +PE+F+EDA++ IFA L D+++ + +
Sbjct: 550 LLGDDSQLPTEVSQMFCALPEYFLEDALDFYIFAISNGMKLLMERNADWISRLTVLFTQY 609
Query: 641 KYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGS 700
YI++P+L SK+V VL+ P + +M+ E L+ ++K Y D E G
Sbjct: 610 HYIKSPFLVSKLVRVLSSIQPPLWFNVVRL-------RMAQENLLMCMIKFYSDFEDNGD 662
Query: 701 HTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDE 760
FY+KFN+R NI +LE + + ++ + +A+E ++ F+N +IND+ + +DE
Sbjct: 663 ---FYEKFNVRGNIQYMLEKMEEDMFYKGKFMDMAREC-GAEFIRFVNMVINDATWCIDE 718
Query: 761 SLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFT 820
SL+ + + +E +M+N EW+ + R + ++ + ++ + A ++ +L
Sbjct: 719 SLSGLKSIHDVEKKMANKVEWDNTDQEIRNQDLGVYEEAKRKVKGWLGTAKSNLKLLLSI 778
Query: 821 SEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYV 880
+ PF P + ER+A+MLN+ L QL+G + L +KDP Y + P++ + ++ IY+
Sbjct: 779 TVNSPEPFRTPVLGERLAAMLNHNLSQLIGSKASELKVKDPRSYGWEPREFVSLLISIYL 838
Query: 881 HLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDG-RIIQEFIELGAKAKAAAS 939
L F I+ D R+Y+ + F A + + K G ++ F L K
Sbjct: 839 KL----NMPAFVKYIAYDERTYSPEFFHNAIECMRKNSIVGFSQLESFEHLAEDVKKEYE 894
Query: 940 EAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHL 999
+ E D+P+EF DPI +M DPV LPS + +DR VI+RHLLS +PFNR+ L
Sbjct: 895 AKAELEEEYDDVPEEFKDPIMDAIMVDPVKLPSGHV-MDRAVIERHLLSTPNNPFNRAPL 953
Query: 1000 TADMLIPNTELKAKIEEFI 1018
+ + L P++ELKAKI+E+I
Sbjct: 954 SHNELSPDSELKAKIQEWI 972
>sp|Q5ZHY5|CHIP_CHICK STIP1 homology and U box-containing protein 1 OS=Gallus gallus
GN=STUB1 PE=2 SV=1
Length = 314
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 942 MDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDAT-DPFNRSHLT 1000
+D + DIPD I + LM++P I PS IT DR I+ HL DP RS LT
Sbjct: 229 VDEKRKKRDIPDYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFDPVTRSPLT 287
Query: 1001 ADMLIPNTELKAKIEEFIKSQG 1022
D LIPN +K I+ FI G
Sbjct: 288 QDQLIPNLAMKEVIDAFISENG 309
>sp|Q9UNE7|CHIP_HUMAN E3 ubiquitin-protein ligase CHIP OS=Homo sapiens GN=STUB1 PE=1 SV=2
Length = 303
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 942 MDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDAT-DPFNRSHLT 1000
+D + DIPD I + LM++P I PS IT DR I+ HL DP RS LT
Sbjct: 218 VDEKRKKRDIPDYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFDPVTRSPLT 276
Query: 1001 ADMLIPNTELKAKIEEFIKSQG 1022
+ LIPN +K I+ FI G
Sbjct: 277 QEQLIPNLAMKEVIDAFISENG 298
>sp|Q9WUD1|CHIP_MOUSE STIP1 homology and U box-containing protein 1 OS=Mus musculus
GN=Stub1 PE=1 SV=1
Length = 304
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 942 MDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDAT-DPFNRSHLT 1000
+D + DIPD I + LM++P I PS IT DR I+ HL DP RS LT
Sbjct: 219 VDEKRKKRDIPDYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFDPVTRSPLT 277
Query: 1001 ADMLIPNTELKAKIEEFIKSQG 1022
+ LIPN +K I+ FI G
Sbjct: 278 QEQLIPNLAMKEVIDAFISENG 299
>sp|Q925F4|RNF37_MOUSE RING finger protein 37 OS=Mus musculus GN=Ubox5 PE=2 SV=2
Length = 539
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 950 DIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA------TDPFNRSHLTA-D 1002
D+P+EFLDPI +M P++LPS ++ +D+ +++ LS+A +DPF T
Sbjct: 258 DVPEEFLDPITLEIMPCPMLLPSGKV-IDQSTLEKCNLSEAAWGRVPSDPFTGLAFTPQS 316
Query: 1003 MLIPNTELKAKIEEFI 1018
+P+ LKA+I+ F+
Sbjct: 317 QPLPHPSLKARIDRFL 332
>sp|O94941|RNF37_HUMAN RING finger protein 37 OS=Homo sapiens GN=UBOX5 PE=2 SV=1
Length = 541
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 950 DIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDAT------DPFNRSHLTA-D 1002
D+P+EFLDPI +M P++LPS ++ +D+ +++ S+AT DPF T
Sbjct: 258 DVPEEFLDPITLEIMPCPMLLPSGKV-IDQSTLEKCNRSEATWGRVPSDPFTGVAFTPHS 316
Query: 1003 MLIPNTELKAKIEEFI 1018
+P+ LKA+I+ F+
Sbjct: 317 QPLPHPSLKARIDHFL 332
>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica
GN=SPL11 PE=1 SV=2
Length = 694
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTADMLIPNTE 1009
IPDEF PI LMKDPVI+ + + T +R I++ + S T P + ++ L PN
Sbjct: 273 IPDEFRCPISLELMKDPVIVSTGQ-TYERACIEKWIASGHHTCPTTQQKMSTSALTPNYV 331
Query: 1010 LKAKIEEFIKSQGLK 1024
L++ I ++ ++ G++
Sbjct: 332 LRSLISQWCETNGME 346
>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1
SV=2
Length = 694
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTADMLIPNTE 1009
IPDEF PI LMKDPVI+ + + T +R I++ + S T P + ++ L PN
Sbjct: 273 IPDEFRCPISLELMKDPVIVSTGQ-TYERACIEKWIASGHHTCPTTQQKMSTSALTPNYV 331
Query: 1010 LKAKIEEFIKSQGLK 1024
L++ I ++ ++ G++
Sbjct: 332 LRSLISQWCETNGME 346
>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica
GN=PUB12 PE=2 SV=1
Length = 611
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTADMLIPNTE 1009
IPDEF PI LM+DPVI+ S + T +R IQ+ L S T P + L+ L PN
Sbjct: 228 IPDEFRCPISLELMQDPVIVSSGQ-TYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFV 286
Query: 1010 LKAKIEEFIKSQGLK 1024
LK+ I ++ ++ G++
Sbjct: 287 LKSLISQWCEANGIE 301
>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20
PE=2 SV=1
Length = 431
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTADMLIPNTE 1009
IP +F PI Y LMKDPVI+ S IT DR I++ S T P + LT+ IPN
Sbjct: 33 IPSQFQCPISYELMKDPVIIASG-ITYDRENIEKWFESGYQTCPVTNTVLTSLEQIPNHT 91
Query: 1010 LKAKIEEFIKSQ---GLKR 1025
++ I+ + S G++R
Sbjct: 92 IRRMIQGWCGSSLGGGIER 110
>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12
PE=2 SV=1
Length = 654
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 952 PDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA-TDPFNRSHLTADMLIPNTEL 1010
P+EF PI LM DPVI+ S + T +R I++ L T P + LT+D++ PN L
Sbjct: 257 PEEFRCPISLELMTDPVIVSSGQ-TYERECIKKWLEGGHLTCPKTQETLTSDIMTPNYVL 315
Query: 1011 KAKIEEFIKSQGLK 1024
++ I ++ +S G++
Sbjct: 316 RSLIAQWCESNGIE 329
>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13
PE=1 SV=1
Length = 660
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 895 ISSDGRSYNEQLFSAAADVLWKIGEDG---RIIQEFIE----------LGAKAKAAASEA 941
++ + + +E + S+ DV I E ++I++F++ +G +++ +
Sbjct: 187 LAQESVALHEMVASSGGDVGENIEEMAMVLKMIKDFVQTEDDNGEEQKVGVNSRSNGQTS 246
Query: 942 MDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLT 1000
A + IPD+F PI +M+DPVI+ S + T +R I++ + +T P + LT
Sbjct: 247 TAASQKIPVIPDDFRCPISLEMMRDPVIVSSGQ-TYERTCIEKWIEGGHSTCPKTQQALT 305
Query: 1001 ADMLIPNTELKAKIEEFIKSQGLK 1024
+ L PN L++ I ++ ++ ++
Sbjct: 306 STTLTPNYVLRSLIAQWCEANDIE 329
>sp|Q9SVC6|PUB22_ARATH E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22
PE=1 SV=1
Length = 435
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 942 MDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATD--PFNRSHL 999
MD E +IP FL PI +MKDPVI+ S+ IT DR I++ L S + P + +
Sbjct: 1 MDQEI---EIPSFFLCPISLDIMKDPVIV-STGITYDRESIEKWLFSGKKNSCPVTKQVI 56
Query: 1000 TADMLIPNTELKAKIEEFIK---SQGLKR 1025
T L PN L+ I+ + S G++R
Sbjct: 57 TETDLTPNHTLRRLIQSWCTLNASYGIER 85
>sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21
PE=2 SV=1
Length = 435
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS-DATDPFNRSHLTADMLIPNTE 1009
IP EF PI LMKDPVI+ S+ IT DR I+ + S + T P + LT IPN
Sbjct: 31 IPPEFQCPISIDLMKDPVII-STGITYDRVSIETWINSGNKTCPVTNTVLTTFDQIPNHT 89
Query: 1010 LKAKIEEFIKSQG 1022
++ I+ + +G
Sbjct: 90 IRKMIQGWCVEKG 102
>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10
PE=2 SV=1
Length = 628
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHL-LSDATDPFNRSHLTADMLIPNTE 1009
IP++FL PI LMKDP I+ + + T +R IQR + + + P + L L PN
Sbjct: 243 IPEDFLCPISLELMKDPAIVSTGQ-TYERSFIQRWIDCGNLSCPKTQQKLENFTLTPNYV 301
Query: 1010 LKAKIEEFIKSQGLKRHGEGLN--IQSIKDTIQTTNGDM 1046
L++ I ++ +++ G +N ++ + + +GDM
Sbjct: 302 LRSLISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDM 340
>sp|Q6EUK7|PUB04_ORYSJ U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica
GN=PUB4 PE=2 SV=1
Length = 728
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRP-VIQRHLLSDATDPFNRSHLTADMLIPNTE 1009
+P EF PI LM+DPV+ + + T DRP +IQ +T P + L L+PN
Sbjct: 297 VPKEFSCPISLDLMRDPVVASTGQ-TYDRPSIIQWIEEGHSTCPNSGQTLADHRLVPNRA 355
Query: 1010 LKAKIEEFIKSQGLK 1024
L++ I ++ GL+
Sbjct: 356 LRSLISQWCGVYGLQ 370
>sp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23
PE=1 SV=1
Length = 411
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 942 MDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATD--PFNRSHL 999
MD E +IP FL PI +MKDPVI+ S+ IT DR I++ L + + P + +
Sbjct: 6 MDEEI---EIPPFFLCPISLEIMKDPVIV-STGITYDRDSIEKWLFAGKKNSCPVTKQDI 61
Query: 1000 TADMLIPNTELKAKIEEFIK---SQGLKR 1025
T L PN L+ I+ + S G++R
Sbjct: 62 TDADLTPNHTLRRLIQSWCTLNASYGVER 90
>sp|Q9SRT0|PUB9_ARATH U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9
PE=1 SV=1
Length = 460
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 952 PDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS-DATDPFNRSHLTADMLIPNTEL 1010
P+EF P+ LM+DPV+L S + T D+ IQ+ L S + T P + L L PN +
Sbjct: 75 PEEFRCPLSNELMRDPVVLASGQ-TYDKLFIQKWLSSGNRTCPKTQQVLPHTALTPNLLI 133
Query: 1011 KAKIEEFIKSQGLK 1024
+ I ++ K GL+
Sbjct: 134 REMISKWCKKNGLE 147
>sp|Q8N9V3|WSDU1_HUMAN WD repeat, SAM and U-box domain-containing protein 1 OS=Homo sapiens
GN=WDSUB1 PE=1 SV=3
Length = 476
Score = 41.6 bits (96), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 917 IGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRIT 976
+G +++++ EL K K+ +S IPDEF+ PI LMKDPVI S +
Sbjct: 380 LGLRSKVLRKIEELRTKVKSLSS----------GIPDEFICPITRELMKDPVI-ASDGYS 428
Query: 977 VDRPVIQRHLLSDA-TDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 1021
++ ++ + T P L + +L PN LK I ++++
Sbjct: 429 YEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWLETH 474
>sp|Q9D0I6|WSDU1_MOUSE WD repeat, SAM and U-box domain-containing protein 1 OS=Mus musculus
GN=Wdsub1 PE=2 SV=1
Length = 474
Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 917 IGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRIT 976
+G ++++ EL AK + +S IPDEF+ PI LMKDPVI S +
Sbjct: 378 LGLRSKVLRSIEELRAKMDSLSS----------GIPDEFICPITRELMKDPVI-ASDGYS 426
Query: 977 VDRPVIQRHLLSDA-TDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 1021
+R ++ + T P L + +L PN LK I ++++
Sbjct: 427 YEREAMESWIHKKKRTSPMTNLALPSLVLTPNRTLKMAINRWLETH 472
>sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17
PE=2 SV=1
Length = 729
Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHL-LSDATDPFNRSHLTADMLIPNTE 1009
+P +F+ PI LM DPVI+ + + T DR I R + T P L ++PN
Sbjct: 305 VPKDFVCPISLDLMTDPVIISTGQ-TYDRNSIARWIEEGHCTCPKTGQMLMDSRIVPNRA 363
Query: 1010 LKAKIEEFIKSQGLKRHGE 1028
LK I ++ + G+ E
Sbjct: 364 LKNLIVQWCTASGISYESE 382
>sp|A0AUS0|WSDU1_DANRE WD repeat, SAM and U-box domain-containing protein 1 OS=Danio rerio
GN=wdsub1 PE=2 SV=1
Length = 487
Score = 40.4 bits (93), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 952 PDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS-DATDPFNRSHLTADMLIPNTEL 1010
PDEFL PI +MKDPVI + + +R I+ + + + T P L +L PN L
Sbjct: 418 PDEFLCPITREIMKDPVI-AADGYSYEREAIEAWISTKNRTSPMTNLPLQTTLLTPNRTL 476
Query: 1011 KAKIEEFIKSQ 1021
K I + SQ
Sbjct: 477 KMAIFRWSTSQ 487
>sp|O23225|PUB5_ARATH U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5
PE=2 SV=3
Length = 718
Score = 40.4 bits (93), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 949 GDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATD--PFNRSHLTADMLIP 1006
G +P++F + T+M DPVI+ S T +R IQ+ + D P ++ L L P
Sbjct: 217 GTLPEKFKCTLSRTVMYDPVIISSGN-TFERMQIQK-WFDEGNDSCPISKRKLDDFTLKP 274
Query: 1007 NTELKAKIEEFIKSQGL 1023
N ELK++I E+ GL
Sbjct: 275 NVELKSQISEWCAKNGL 291
>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3
PE=2 SV=2
Length = 760
Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 945 EAALG-DIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTAD 1002
E A G IP F P+ LM DPVI+ S + T DR I++ L + A P R LT
Sbjct: 231 EVAKGISIPPYFRCPLSTELMLDPVIVASGQ-TFDRTSIKKWLDNGLAVCPRTRQVLTHQ 289
Query: 1003 MLIPNTELKAKIEEFIKS 1020
LIPN +KA I ++++
Sbjct: 290 ELIPNYTVKAMIASWLEA 307
>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25
PE=2 SV=1
Length = 421
Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQR--HLLSDATDPFNRSHLTADMLIPNT 1008
IP F PI LM+DPV + + + T DR I+ + ++ T P R+ L+ LIPN
Sbjct: 14 IPYHFRCPISLELMQDPVTVCTGQ-TYDRASIESWVSIGNNTTCPVTRAPLSDFTLIPNH 72
Query: 1009 ELKAKIEEFI---KSQGLKR 1025
L+ I+E+ +S G++R
Sbjct: 73 TLRRLIQEWCVANRSNGVER 92
>sp|Q5FVN8|WSDU1_RAT WD repeat, SAM and U-box domain-containing protein 1 OS=Rattus
norvegicus GN=Wdsub1 PE=2 SV=1
Length = 476
Score = 40.0 bits (92), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA-TDPFNRSHLTADMLIPNTE 1009
IPDEF+ PI LMKDPVI S + +R ++ + T P L + +L PN
Sbjct: 404 IPDEFICPITRELMKDPVI-ASDGYSYEREAMESWIHKKKRTSPMTNLALPSLVLTPNRT 462
Query: 1010 LKAKIEEFIKSQ 1021
LK I ++++
Sbjct: 463 LKMAINRWLETH 474
>sp|Q9FXA4|PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26
PE=2 SV=1
Length = 421
Score = 40.0 bits (92), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHL-LSDATDPFNRSHLTADMLIPNTE 1009
IP F PI LM DPV + + + T DR I + + + T P R L+ LIPN
Sbjct: 14 IPYHFRCPISLDLMSDPVTISTGQ-TYDRTSIDSWIAMGNTTCPVTRVALSDFTLIPNHT 72
Query: 1010 LKAKIEEFI---KSQGLKR 1025
L+ I+E+ +S G++R
Sbjct: 73 LRRLIQEWCVANRSNGVER 91
>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14
PE=1 SV=1
Length = 632
Score = 40.0 bits (92), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHL-LSDATDPFNRSHLTADMLIPNTE 1009
IP+ F PI LMKDPVI+ + + T +R IQ+ L T P ++ L L PN
Sbjct: 248 IPEYFRCPISLELMKDPVIVSTGQ-TYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 306
Query: 1010 LKAKIEEFIKSQGLK 1024
LK+ I + +S G++
Sbjct: 307 LKSLIALWCESNGIE 321
>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11
PE=2 SV=2
Length = 612
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHL-LSDATDPFNRSHLTADMLIPNTE 1009
IP +FL P+ LMKDPVI+ + + T +R IQR + + T P + L L PN
Sbjct: 241 IPVDFLCPVSLELMKDPVIVATGQ-TYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNYV 299
Query: 1010 LKAKIEEFIKSQGLKRHGEGLN 1031
L++ I + +++ +N
Sbjct: 300 LRSLISRWCAEHNIEQPAGYIN 321
>sp|Q5ZMC3|WSDU1_CHICK WD repeat, SAM and U-box domain-containing protein 1 OS=Gallus gallus
GN=WDSUB1 PE=2 SV=2
Length = 476
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTADMLIPNTE 1009
+PDEFL PI LMKDPVI + + ++ ++ + ++ + P L + +L PN
Sbjct: 404 VPDEFLCPITRELMKDPVI-AADGYSYEKEAMENWISNNRRSSPMTNLPLPSLVLTPNRT 462
Query: 1010 LKAKIEEFIKSQ 1021
LK I ++++Q
Sbjct: 463 LKMAISRWLETQ 474
>sp|O81902|PUB8_ARATH U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8
PE=2 SV=1
Length = 374
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 950 DIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS-DATDPFNRSHLT-ADMLIPN 1007
D+P++F PI +M DPVIL S T DR IQ+ + S + T P + L+ LIPN
Sbjct: 4 DLPNDFRCPISLEIMSDPVILQSGH-TFDRVSIQQWIDSGNRTCPITKLPLSETPYLIPN 62
Query: 1008 TELKAKIEEF 1017
L++ I F
Sbjct: 63 HALRSLILNF 72
>sp|Q9SRS9|CHIP_ARATH E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana GN=CHIP PE=1
SV=1
Length = 278
Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 950 DIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDAT-DPFNRSHLTADMLIPNT 1008
++PD I + +DPVI PS +T +R I HL DP R + L+PN
Sbjct: 199 EVPDYLCCNITLEIFRDPVISPSG-VTYERAAILEHLKKVGKFDPITREKIDPANLVPNL 257
Query: 1009 ELKAKIEEFIKSQ 1021
+K + +++
Sbjct: 258 AIKEAVAAYLEKH 270
>sp|Q9SF15|PUB24_ARATH E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24
PE=1 SV=1
Length = 456
Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 942 MDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTA 1001
MD E +IP+ F+ PI +MKDPV S IT DR I + L + P + L
Sbjct: 1 MDQEEEEIEIPNYFICPISLEIMKDPVTTVSG-ITYDRQNIVKWLEKVPSCPVTKQPLPL 59
Query: 1002 DM-LIPNTELKAKIEEF 1017
D L PN L+ I+ +
Sbjct: 60 DSDLTPNHMLRRLIQHW 76
>sp|P33107|KAD_MICLU Adenylate kinase OS=Micrococcus luteus GN=adk PE=3 SV=1
Length = 205
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 352 RAHIQVEPLSCASSGMFVNLSAVM-LRLCDPFLDANLTKRDKI----DPKYVFYSSRLDL 406
R QVE L + +LSAV+ L + D L L KR +I D RLDL
Sbjct: 89 RTKGQVEALDAMLAEAGQSLSAVVELEVPDEELVERLLKRAEIEGRADDTQEVIEHRLDL 148
Query: 407 RSLTALHASSEEV-SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAG 465
H +E V E++ +G A+ DG+ D +LLQ+ + S+ G SLP
Sbjct: 149 -----YHRETESVIQEYVERGIVARVDGTGQIDDVTERLLQAVYSVRSATG----SLPVI 199
Query: 466 RPAS 469
+P +
Sbjct: 200 QPGA 203
>sp|C5CC42|KAD_MICLC Adenylate kinase OS=Micrococcus luteus (strain ATCC 4698 / DSM
20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC 2665 /
VKM Ac-2230) GN=adk PE=3 SV=1
Length = 205
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 352 RAHIQVEPLSCASSGMFVNLSAVM-LRLCDPFLDANLTKRDKI----DPKYVFYSSRLDL 406
R QVE L + +LSAV+ L + D L L KR +I D RLDL
Sbjct: 89 RTKGQVEALDAMLAEAGQSLSAVVELEVPDEELVERLLKRAEIEGRADDTQEVIEHRLDL 148
Query: 407 RSLTALHASSEEV-SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAG 465
H +E V E++ +G A+ DG+ D +LLQ+ + S+ G SLP
Sbjct: 149 -----YHRETESVIQEYVERGIVARVDGTGQIDDVTERLLQAVYSVRSATG----SLPVI 199
Query: 466 RPAS 469
+P +
Sbjct: 200 QPGA 203
>sp|Q9STT1|PUB39_ARATH U-box domain-containing protein 39 OS=Arabidopsis thaliana GN=PUB39
PE=2 SV=1
Length = 509
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 949 GDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQ--RHL-----LSDATDPFNRSHLTA 1001
G+ P EFL PI LM DPV++ S + T +R +Q R+L L D T P
Sbjct: 8 GETPTEFLCPITGFLMSDPVVVASGQ-TFERISVQVCRNLSFAPKLHDGTQP------DL 60
Query: 1002 DMLIPNTELKAKI 1014
+IPN +K+ I
Sbjct: 61 STVIPNLAMKSTI 73
>sp|Q9FGD7|PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana
GN=PUB50 PE=3 SV=1
Length = 765
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 933 KAKAAASEAMDAEAALGD---IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHL-LS 988
K K EA ++ GD IP F+ PI +MK+P + + + + IQ L +
Sbjct: 668 KTKGGYEEATNSNMDEGDPNDIPSVFMCPILQEVMKNPHV-AADGFSYELEAIQEWLSMG 726
Query: 989 DATDPFNRSHLTADMLIPNTELKAKIEEF 1017
T P L ML PN L++ I+++
Sbjct: 727 HDTSPMTNLRLDYQMLTPNHTLRSLIQDW 755
>sp|O80742|PUB19_ARATH U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19
PE=2 SV=1
Length = 686
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 953 DEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS-DATDPFNRSHLTADMLIPNTELK 1011
D+ PI +M DPV+L S T DR I + S + T P L + +L+ N +K
Sbjct: 280 DDLRCPISLEIMSDPVVLESGH-TYDRSSITKWFASGNITCPKTGKTLVSTVLVDNFSVK 338
Query: 1012 AKIEEFIKSQGL 1023
I+ + K G+
Sbjct: 339 QVIQSYSKQNGV 350
>sp|Q5ZRQ0|LUBX_LEGPH E3 ubiquitin-protein ligase LubX OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=lubX PE=1 SV=1
Length = 246
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 929 ELGAKAKAAASEAMDAEAALGDI-PDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLL 987
++ K+K A++A + + P PI +KDPVI P + ++ I + L
Sbjct: 14 DIDHKSKYLREAALEANLSHPETTPTMLTCPIDSGFLKDPVITPEGFV-YNKSSILKWLE 72
Query: 988 SDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 1021
+ DP +R LTA L P EL + F+++Q
Sbjct: 73 TKKEDPQSRKPLTAKDLQPFPELLIIVNRFVETQ 106
>sp|Q5X159|LUBX_LEGPA E3 ubiquitin-protein ligase LubX OS=Legionella pneumophila (strain
Paris) GN=lubX PE=3 SV=1
Length = 240
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 929 ELGAKAKAAASEAMDAEAALGDI-PDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLL 987
++ K+K A++A + + P PI +KDPVI P + ++ I + L
Sbjct: 8 DIDHKSKYLREAALEANLSHPETTPTMLTCPIDSGFLKDPVITPEGFV-YNKSSILKWLE 66
Query: 988 SDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 1021
+ DP +R LTA L P EL + F+++Q
Sbjct: 67 TKKEDPQSRKPLTAKDLQPFPELLIIVNRFVETQ 100
>sp|Q7M8Y8|SYFB_WOLSU Phenylalanine--tRNA ligase beta subunit OS=Wolinella succinogenes
(strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 /
FDC 602W) GN=pheT PE=3 SV=1
Length = 786
Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 264 SILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRP 300
S++ PF H+SA+P I+K+ D+G + S S R P
Sbjct: 6 SLINPFVHLSAIPTQRIYKTLNDIGLEVDSFHSLRAP 42
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 379,555,328
Number of Sequences: 539616
Number of extensions: 16180572
Number of successful extensions: 75737
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 75329
Number of HSP's gapped (non-prelim): 365
length of query: 1049
length of database: 191,569,459
effective HSP length: 128
effective length of query: 921
effective length of database: 122,498,611
effective search space: 112821220731
effective search space used: 112821220731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)