Query 001583
Match_columns 1049
No_of_seqs 266 out of 1163
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:25:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5113 UFD2 Ubiquitin fusion 100.0 1E-168 3E-173 1416.7 62.5 906 11-1025 3-925 (929)
2 KOG2042 Ubiquitin fusion degra 100.0 2E-158 5E-163 1416.7 57.9 881 40-1025 52-941 (943)
3 PF10408 Ufd2P_core: Ubiquitin 100.0 8E-150 2E-154 1355.3 57.9 606 266-936 1-629 (629)
4 PF04564 U-box: U-box domain; 99.8 7.7E-21 1.7E-25 169.8 5.1 71 951-1022 1-72 (73)
5 smart00504 Ubox Modified RING 99.6 2E-15 4.3E-20 130.2 5.9 63 954-1017 1-63 (63)
6 KOG4692 Predicted E3 ubiquitin 99.3 2.3E-09 5E-14 118.0 28.4 391 575-1000 2-467 (489)
7 KOG4642 Chaperone-dependent E3 99.1 4.8E-11 1E-15 126.8 6.3 79 946-1025 203-282 (284)
8 TIGR00599 rad18 DNA repair pro 98.4 2.4E-07 5.2E-12 107.0 6.7 73 948-1021 20-92 (397)
9 PLN03208 E3 ubiquitin-protein 98.4 2E-07 4.3E-12 97.6 3.6 65 945-1010 9-89 (193)
10 PF11789 zf-Nse: Zinc-finger o 97.9 4.7E-06 1E-10 71.5 2.3 46 951-996 8-55 (57)
11 KOG0289 mRNA splicing factor [ 97.9 6.4E-06 1.4E-10 93.9 2.3 52 955-1006 1-52 (506)
12 COG5222 Uncharacterized conser 97.7 5.1E-05 1.1E-09 82.8 6.7 101 920-1023 241-345 (427)
13 PF15227 zf-C3HC4_4: zinc fing 97.5 5.3E-05 1.2E-09 61.1 2.5 37 957-994 1-41 (42)
14 PF13923 zf-C3HC4_2: Zinc fing 97.5 7.8E-05 1.7E-09 58.8 3.1 38 957-995 1-39 (39)
15 PF13920 zf-C3HC4_3: Zinc fing 97.4 0.00013 2.8E-09 60.6 3.2 47 953-1000 1-48 (50)
16 PHA02929 N1R/p28-like protein; 97.4 0.0002 4.3E-09 78.2 5.3 49 951-1000 171-227 (238)
17 KOG0287 Postreplication repair 97.2 0.00016 3.5E-09 80.3 2.8 67 953-1020 22-88 (442)
18 PF13445 zf-RING_UBOX: RING-ty 97.1 0.00032 6.9E-09 57.0 2.6 31 957-989 1-35 (43)
19 PF14835 zf-RING_6: zf-RING of 97.1 0.00016 3.4E-09 63.2 0.5 59 954-1014 7-65 (65)
20 KOG2177 Predicted E3 ubiquitin 97.1 0.00049 1.1E-08 74.4 4.4 73 950-1025 9-81 (386)
21 KOG0823 Predicted E3 ubiquitin 97.0 0.00039 8.5E-09 74.6 2.8 57 952-1009 45-104 (230)
22 KOG0317 Predicted E3 ubiquitin 96.9 0.00058 1.2E-08 75.3 3.3 57 948-1005 232-289 (293)
23 COG5432 RAD18 RING-finger-cont 96.9 0.00061 1.3E-08 74.5 2.9 67 954-1021 25-91 (391)
24 PF13639 zf-RING_2: Ring finge 96.7 0.00094 2E-08 54.0 2.2 39 957-996 3-44 (44)
25 PF00097 zf-C3HC4: Zinc finger 96.2 0.0048 1E-07 48.8 3.3 38 957-995 1-41 (41)
26 TIGR00570 cdk7 CDK-activating 96.0 0.01 2.2E-07 67.0 6.0 63 953-1016 2-74 (309)
27 PHA02926 zinc finger-like prot 95.9 0.0063 1.4E-07 65.2 3.5 57 949-1008 165-236 (242)
28 cd00162 RING RING-finger (Real 95.7 0.012 2.6E-07 46.1 3.7 43 956-999 1-45 (45)
29 KOG0320 Predicted E3 ubiquitin 95.3 0.011 2.3E-07 61.4 2.6 51 955-1006 132-184 (187)
30 COG5243 HRD1 HRD ubiquitin lig 95.3 0.036 7.8E-07 63.0 6.7 56 951-1007 284-352 (491)
31 KOG0297 TNF receptor-associate 95.2 0.014 3E-07 68.6 3.5 72 949-1021 16-89 (391)
32 smart00184 RING Ring finger. E 95.0 0.025 5.3E-07 42.7 3.2 38 957-995 1-39 (39)
33 KOG3039 Uncharacterized conser 94.7 0.025 5.3E-07 61.3 3.3 55 951-1006 218-276 (303)
34 PF12678 zf-rbx1: RING-H2 zinc 94.4 0.045 9.7E-07 49.4 3.9 39 957-996 22-73 (73)
35 COG5574 PEX10 RING-finger-cont 94.2 0.025 5.5E-07 62.0 2.1 53 951-1004 211-266 (271)
36 KOG2660 Locus-specific chromos 93.8 0.031 6.8E-07 63.0 2.1 66 948-1013 9-78 (331)
37 PF04641 Rtf2: Rtf2 RING-finge 93.8 0.091 2E-06 58.5 5.8 65 951-1017 110-182 (260)
38 KOG4159 Predicted E3 ubiquitin 93.8 0.044 9.5E-07 64.3 3.3 72 949-1021 79-155 (398)
39 KOG0802 E3 ubiquitin ligase [P 93.7 0.027 5.9E-07 68.9 1.4 49 951-1000 288-341 (543)
40 KOG2164 Predicted E3 ubiquitin 93.1 0.069 1.5E-06 63.4 3.3 71 951-1022 183-262 (513)
41 KOG2979 Protein involved in DN 93.0 0.098 2.1E-06 57.4 4.1 66 953-1018 175-246 (262)
42 KOG0883 Cyclophilin type, U bo 92.7 0.073 1.6E-06 60.9 2.8 53 955-1008 41-93 (518)
43 PF14634 zf-RING_5: zinc-RING 92.3 0.11 2.3E-06 42.2 2.5 40 957-997 2-44 (44)
44 PF06416 DUF1076: Protein of u 92.2 0.073 1.6E-06 51.4 1.7 56 951-1006 37-97 (113)
45 KOG0978 E3 ubiquitin ligase in 91.6 0.091 2E-06 65.0 1.9 56 950-1006 639-695 (698)
46 KOG0311 Predicted E3 ubiquitin 90.8 0.042 9E-07 62.4 -1.8 69 946-1014 35-105 (381)
47 KOG0826 Predicted E3 ubiquitin 90.8 0.12 2.6E-06 58.3 1.8 55 951-1005 297-351 (357)
48 KOG3039 Uncharacterized conser 90.6 0.16 3.5E-06 55.2 2.4 38 951-989 40-77 (303)
49 COG5540 RING-finger-containing 85.6 0.66 1.4E-05 52.0 3.3 45 956-1001 325-373 (374)
50 KOG4367 Predicted Zn-finger pr 84.3 0.51 1.1E-05 54.8 1.7 37 952-989 2-38 (699)
51 KOG0824 Predicted E3 ubiquitin 83.0 0.64 1.4E-05 52.2 1.8 46 956-1002 9-55 (324)
52 KOG3113 Uncharacterized conser 83.0 1.5 3.2E-05 48.2 4.5 126 890-1023 43-188 (293)
53 KOG2817 Predicted E3 ubiquitin 82.3 0.99 2.1E-05 52.5 3.0 44 955-999 335-384 (394)
54 KOG1002 Nucleotide excision re 82.3 0.73 1.6E-05 54.8 2.0 56 953-1009 535-595 (791)
55 PF02891 zf-MIZ: MIZ/SP-RING z 82.1 1.3 2.8E-05 37.3 2.9 44 955-998 3-50 (50)
56 PF12861 zf-Apc11: Anaphase-pr 76.6 2.4 5.2E-05 39.7 3.1 45 957-1001 35-83 (85)
57 KOG1785 Tyrosine kinase negati 72.1 1.4 3.1E-05 50.9 0.6 49 951-1000 365-416 (563)
58 KOG1813 Predicted E3 ubiquitin 71.5 1.7 3.7E-05 48.8 1.0 59 955-1015 242-300 (313)
59 KOG4628 Predicted E3 ubiquitin 69.1 3.3 7.2E-05 48.0 2.6 44 955-999 230-277 (348)
60 KOG1039 Predicted E3 ubiquitin 65.7 3.8 8.3E-05 47.6 2.2 49 952-1000 159-221 (344)
61 PF04641 Rtf2: Rtf2 RING-finge 65.3 7.8 0.00017 43.3 4.5 38 954-991 34-71 (260)
62 COG5109 Uncharacterized conser 63.9 4.9 0.00011 45.5 2.6 46 955-1001 337-388 (396)
63 COG5219 Uncharacterized conser 59.6 4.5 9.7E-05 51.5 1.4 44 957-1000 1472-1523(1525)
64 COG5152 Uncharacterized conser 56.5 5.7 0.00012 42.3 1.4 44 955-999 197-240 (259)
65 COG5627 MMS21 DNA repair prote 53.2 12 0.00027 41.0 3.3 70 954-1023 189-264 (275)
66 KOG0828 Predicted E3 ubiquitin 52.3 7.9 0.00017 46.3 1.8 34 967-1001 601-635 (636)
67 PF05883 Baculo_RING: Baculovi 51.7 10 0.00022 38.4 2.2 47 954-1000 26-80 (134)
68 KOG1001 Helicase-like transcri 49.9 9.3 0.0002 48.3 2.0 121 873-1006 377-506 (674)
69 PF14447 Prok-RING_4: Prokaryo 48.7 10 0.00022 32.8 1.4 41 960-1003 13-53 (55)
70 KOG0396 Uncharacterized conser 48.1 8.5 0.00018 44.7 1.2 49 955-1004 331-383 (389)
71 KOG1734 Predicted RING-contain 43.4 5.5 0.00012 44.4 -1.1 54 965-1019 245-305 (328)
72 PF11793 FANCL_C: FANCL C-term 42.2 4.4 9.5E-05 36.4 -1.8 49 954-1002 2-68 (70)
73 COG5194 APC11 Component of SCF 39.7 20 0.00042 33.3 1.9 34 967-1000 48-81 (88)
74 KOG4185 Predicted E3 ubiquitin 36.2 31 0.00067 39.0 3.3 52 965-1017 20-77 (296)
75 KOG2879 Predicted E3 ubiquitin 33.1 34 0.00073 38.6 2.8 46 954-1000 239-287 (298)
76 PF06757 Ins_allergen_rp: Inse 32.2 6.2E+02 0.013 26.6 13.0 139 557-737 29-168 (179)
77 KOG1645 RING-finger-containing 31.7 32 0.00069 40.7 2.4 59 955-1014 5-70 (463)
78 smart00744 RINGv The RING-vari 30.5 49 0.0011 27.8 2.7 40 957-996 2-49 (49)
79 PF15290 Syntaphilin: Golgi-lo 30.3 1.8E+02 0.004 33.1 7.8 73 487-560 69-143 (305)
80 COG5175 MOT2 Transcriptional r 30.0 50 0.0011 38.1 3.5 51 953-1005 14-69 (480)
81 PF11672 DUF3268: Protein of u 26.3 1E+02 0.0022 30.1 4.5 41 313-353 58-99 (102)
82 KOG1571 Predicted E3 ubiquitin 26.1 60 0.0013 38.0 3.4 48 949-1000 300-347 (355)
83 PRK06266 transcription initiat 25.1 2.5E+02 0.0055 29.8 7.6 57 949-1021 112-169 (178)
84 KOG4253 Tryptophan-rich basic 25.0 3.2E+02 0.007 28.7 7.9 105 500-616 44-148 (175)
85 KOG4172 Predicted E3 ubiquitin 22.0 28 0.0006 30.2 -0.2 43 957-999 10-53 (62)
86 PF05266 DUF724: Protein of un 21.8 1E+03 0.022 25.8 11.4 106 651-777 13-121 (190)
87 KOG4265 Predicted E3 ubiquitin 21.7 58 0.0013 38.0 2.2 45 956-1000 292-336 (349)
88 KOG0804 Cytoplasmic Zn-finger 20.8 46 0.001 39.9 1.2 42 956-1000 177-222 (493)
No 1
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-168 Score=1416.66 Aligned_cols=906 Identities=24% Similarity=0.359 Sum_probs=809.1
Q ss_pred HHHHHHHHHHhheeeccCCCCCCCCCeeechhhHHHHhhcCCCcccChhhhhHHHHHHHhCCCCCCCChhhHHHHHHH-H
Q 001583 11 EEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYR-R 89 (1049)
Q Consensus 11 ~~~~~~~l~~if~vTl~~~~~~~~~~~~yL~~l~~el~~e~~~~~l~~d~ld~~l~~rl~~~~~~~~~~~~YL~~c~~-R 89 (1049)
.+|.+++-..++.||.+|+ +.+-||| +.+++..+|. .|..+.+|.+|+.+|+... ..+|.||.+||+ +
T Consensus 3 ~~~M~~ie~~~l~it~~p~----D~~~y~l--fk~~e~~~gS--~l~~n~~d~~LL~~l~~~~---nn~fsYl~~s~~fl 71 (929)
T COG5113 3 YPGMNRIELYELFITGMPA----DMDPYEL--FKEAECIRGS--YLTNNSSDNILLTLLPRYK---NNTFSYLQESAKFL 71 (929)
T ss_pred CcccchhhhhhhhcccCcc----ccchhhh--cchhhccccC--ccccccHHHHHHHHccccC---CCchHHHHHHHHHH
Confidence 4699999889999999998 3445777 5566666676 4677799999999999864 788999999999 5
Q ss_pred HHHHHHHhcCCCccchhhHHHHHHHHHHHHHHhhhhhhccCCCccCCCCCCccccccCCCCCCCCCchhHHHhhcCCCCC
Q 001583 90 AHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGID 169 (1049)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~vsY~~~~l~~Pd~F~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~~ 169 (1049)
.+..+|.. + ++........-++.|.+|+++|+|.++.+||-|.. .. -.++..+...
T Consensus 72 ~q~~kri~-k--n~~~a~s~hs~~~li~~l~~~y~g~v~~~~e~FN~-e~--------------i~~ieg~~~~------ 127 (929)
T COG5113 72 IQTIKRIV-K--NPEMAGSAHSPVALIPLLTNTYGGSVFDVMECFNS-EK--------------ISEIEGMARK------ 127 (929)
T ss_pred HHHHHHhc-C--CccccccccchHHHHHHHHhhccceEeehHhhcch-hH--------------HHHHHHHHHh------
Confidence 55444443 2 23333445567899999999999999999999922 10 1112222221
Q ss_pred CCCCCCCCCCCCChHHHHHHHHh--hCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHHhhCChhhhhhhhcCCc
Q 001583 170 GFGNSTSSGSQCPPGFLKEFFEE--ADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQW 247 (1049)
Q Consensus 170 ~~~~~~~~~~~~~~~Fl~eli~r--~~~d~l~~if~~~~~~l~~~~~~~s~~~~~~~~l~~l~~L~~~k~ia~~l~~~~~ 247 (1049)
-+ +|-.|+.++++| ++...++.+|.++++.+....+-+.....-..++.++..|++.||||.++.+.|.
T Consensus 128 -------~~--~p~~fls~f~qr~l~e~~nld~lF~~~LE~l~~~~g~~~~dtV~~NVm~I~~~lv~~kPia~v~~k~p~ 198 (929)
T COG5113 128 -------ML--LPMIFLSSFKQRQLDEASNLDNLFTSALEALTGLHGVLEEDTVLKNVMEIYWGLVNTKPIADVILKFPI 198 (929)
T ss_pred -------cc--cHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhcccchHHHHHHHHHHHHHHHhcCccHHHHhhcCcc
Confidence 11 677999999999 4666699999999999988777666533345589999999999999999999999
Q ss_pred CCCcccCcChhhhhhhcccccccccCCCCCCccccCCChhhhhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001583 248 WIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLA 327 (1049)
Q Consensus 248 f~P~~~~~~g~~~E~~SlLGp~f~lS~l~~~~~f~~~p~v~~~~F~~~~~~~~~~i~~~~~sl~~~l~~~~~~L~~I~~~ 327 (1049)
|.|++ .+.+||.+|+|||+.++|++ ..+||..+|++...|+.+.+..+..+||.+|+.+++.||+|+++
T Consensus 199 ~~~t~---~p~~fe~kt~lG~i~sls~~--------~~dvA~r~~~~~~~rs~q~v~~s~~Sl~~t~s~~~d~lfqIi~~ 267 (929)
T COG5113 199 YSGTN---FPCGFEYKTLLGFIESLSYK--------KCDVAARALDYLGIRSRQVVEKSRRSLRLTLSDHSDKLFQIIHS 267 (929)
T ss_pred cCCCC---CCCCCcceeecccccccchh--------hhhhhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99864 34479999999999999999 46789999999999999999999999999999999999999999
Q ss_pred Hhc-CchhHHHHHHHHHHHHHhchhhhccccCCCccCchhhHHHHHHHHHHhhhhhcCCCCccccccccCCcCCCCCCCC
Q 001583 328 LLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDL 406 (1049)
Q Consensus 328 Llr-~~~sRe~vL~w~a~~i~~N~~R~~~~~d~~~~aSDGFmlNl~~VLlrLc~PF~d~~~~KidKID~~Y~~~~~rvdi 406 (1049)
|+| |.+.|+.+++|||.|+|+||+|++.++.-+...|||||.|++.||-||++||+|.+++|||+||..||+ ++||||
T Consensus 268 lvr~S~~lr~~~~~yfa~v~n~nh~R~~~~~~~~e~~Sdgfm~N~s~vlsRfs~pflDi~~sKID~vd~~YFn-NP~vDi 346 (929)
T COG5113 268 LVRSSKELRANFMKYFAKVINVNHERSKTIFSWRENISDGFMYNMSMVLSRFSRPFLDIGCSKIDMVDKIYFN-NPRVDI 346 (929)
T ss_pred HHhccHHHHHHHHHHHHHHhccchhhccccCCHhhhcchHHHHHHHHHHHHhcccccccccchhhhHhHHhhc-CCcccc
Confidence 999 579999999999999999999999999999999999999999999999999999999999999999999 789999
Q ss_pred CccccccCCHHHHHHHHhcCCCCCCCCCCCCCcchhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhHHH
Q 001583 407 RSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFM 486 (1049)
Q Consensus 407 ~~eTrl~a~~~e~~~~~~~~~p~~~~~~~~~~~~e~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFitecFFL 486 (1049)
++|||+|+++.+++.||.+ +.++++||||+||||
T Consensus 347 k~ETklN~d~k~~dsFy~K----------------------------------------------~Ae~s~NFISD~FFl 380 (929)
T COG5113 347 KEETKLNVDEKSLDSFYTK----------------------------------------------PAEGSNNFISDIFFL 380 (929)
T ss_pred ccchhcchhhhhhhccccC----------------------------------------------ccccCCccchhhHHh
Confidence 9999999999999999962 145688999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHH
Q 001583 487 TARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQG-QTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQH 565 (1049)
Q Consensus 487 T~~~lhlG~~~~~~~~~~l~r~i~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~~l~~l~~~~~~~~a~~L~dp~l~~~ 565 (1049)
+++.+|||+++++.--+++.+.|+.++++++.-..... .-....+.+++.|+++.++...+...|+++ .|...++..+
T Consensus 381 ~lt~~HyGv~~tf~~~ek~g~~IrkLKE~le~e~~~~~gs~~At~lTaqlsrme~~lk~~~S~~~al~g-fl~~tsl~~~ 459 (929)
T COG5113 381 YLTKIHYGVNATFTSCEKFGEYIRKLKESLEYECRLLDGSFQATRLTAQLSRMEAYLKGIDSKMSALNG-FLFMTSLFAD 459 (929)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHhHHHHHHHHHhhhHHHHHHHHH-HHHHhhhhhh
Confidence 99999999999999999999999988887764432111 112345678899999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHHHhcC--------CCCCCCCCCCcccccchhHHHHhHHHHHHHHhhc--cccccccchhHHHHHHHH
Q 001583 566 ALSFYRLMIVWLVDLVGG--------FKMPLPDTCPMEFACMPEHFVEDAMELLIFASRI--PKALDGVLLDDFMNFIIM 635 (1049)
Q Consensus 566 ~l~F~~~~~~wL~~l~~~--------~~lPLp~~~p~~f~~lPE~~iEdi~d~~~f~~r~--p~~l~~~~~~~l~~f~i~ 635 (1049)
.+.|..+++.||.|+++| .++|+-+.+|.+|+|+|||+||++++|..++.++ .+++.. .++++++||++
T Consensus 460 ~f~F~~f~t~~l~rv~dp~~typf~~~~Lp~~ENap~~fk~~pe~~ie~~~ny~l~~~k~~~Spif~~-~L~~l~Ef~~~ 538 (929)
T COG5113 460 EFPFTDFMTEYLARVEDPWPTYPFYYKTLPWMENAPMTFKLIPEATIENALNYVLESIKDWRSPIFKK-ELEPLCEFVKI 538 (929)
T ss_pred ccchHHHHHHHHHHhcCCCCCCCccccccchhcCCcchhhhchHHHhccHHHHHHHHHhcccCchhhc-cccchhhhhhh
Confidence 999999999999999986 4567778899999999999999999999999887 444443 39999999999
Q ss_pred HhCCCCCccChhhHhhHHHHhH-hhcCCCCCCcchhHHhhhhchhhHHHHHHHHHHHhhhhcccCCCccchhhhhhhHHH
Q 001583 636 FMASPKYIRNPYLRSKMVEVLN-CWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNI 714 (1049)
Q Consensus 636 fl~s~~~ikNP~LraklvevL~-~~~p~~~~~~~~~~~lf~~~~~a~~~L~~aLm~fYvdvE~TG~~sqFYdKFn~Ry~I 714 (1049)
++++|++||||||++||+++|+ +.+|.+..++|.+.++|...+++.++|+||||.|||+||+||+|+|||||||+||.|
T Consensus 539 vl~~~~~iknp~L~~kl~~~ls~G~~~~~~~s~~~~~dif~~~kv~~r~LL~ALmaFYi~iEsTGqStqfydkfNirf~i 618 (929)
T COG5113 539 VLHRSSAIKNPMLNRKLDYYLSLGRDEMRMESRSIIHDIFKEGKVFSRWLLPALMAFYIEIESTGQSTQFYDKFNIRFII 618 (929)
T ss_pred hcccHhhhccHHHHHHHHHHHhcCcchhccCchHHHHHHHHhhhhhhhhhHHHHHhHheeeeccCcccceeeeccceeeh
Confidence 9999999999999999999997 577877666788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhhchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhcCCCHHHHHHHHH
Q 001583 715 AELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTR 794 (1049)
Q Consensus 715 ~~Ilk~LW~~~~~r~~l~~~a~~~~~~~FvrFvnlLiND~t~lLDE~L~~L~~I~~~q~e~~d~~~w~~l~~eer~e~~~ 794 (1049)
+.+++.+|+.|.|.++|.++.+.+ -++||||..+|+||+||+|||+|.+|.++|++|.+++|....+ ...|+-+|.+.
T Consensus 619 c~~~~~~yK~Psy~~~L~~~~~tN-~~FFVkfda~mlndlt~lLDEal~~l~E~hniqs~Lad~~s~s-n~~e~~~elq~ 696 (929)
T COG5113 619 CMMKDFEYKQPSYSEGLSSIKDTN-LPFFVKFDAKMLNDLTRLLDEALKELVEEHNIQSLLADAISNS-NISERIGELQK 696 (929)
T ss_pred hHHHHHHhcCchhhhhhhhhhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccC-chhhHHHHHHH
Confidence 999999999999999999998774 8999999999999999999999999999999999999876543 44566678899
Q ss_pred hHHHhhhhhhhhhhchHHHHHHHHHhHhhccCCCCchHHHHHHHHHHHHHHHHhhccccccccccCCcccCCChHHHHHH
Q 001583 795 LFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQ 874 (1049)
Q Consensus 795 ~l~~~er~ars~~~La~etv~ml~~~T~~i~~~Fl~peivdRlA~MLny~L~~LvGPk~~~LKVknpekY~F~Pk~lL~~ 874 (1049)
.++.++||||++++|++++++||+.++++||++|+.||||+|||+||||||+.||||||.+||||||++|+|+||.||+.
T Consensus 697 ~la~a~rqA~~sc~l~d~~~~lf~~~~~~iP~aF~~~EiV~rla~mLNyNL~~l~GPKC~~LkVkdP~~Y~FnaK~LL~~ 776 (929)
T COG5113 697 SLAFAKRQARNSCLLVDGCFDLFTHILDEIPDAFLVDEIVSRLARMLNYNLKILTGPKCTDLKVKDPEQYGFNAKNLLRR 776 (929)
T ss_pred HHHHHHHhhcchheecccHHHHHHHHhhccchhhhhHHHHHHHHHHHhCcchhccCCCccceeecChhhcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCcchhhhhhccCCcCcHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCC
Q 001583 875 IVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGE-DGRIIQEFIELGAKAKAAASEAMDAEAALGDIPD 953 (1049)
Q Consensus 875 i~~iYlnL~~~~~~~~F~~aVa~DgRsy~~elF~~a~~il~~~~l-~~~~i~~~~~l~~~~~~~~~~~~~~e~~~~~iPd 953 (1049)
++++|+||+. +++|+.|||+|||||+.++|.+|.+||.+..+ ++.+|+++.+|+.++++.+..+..||+++||+||
T Consensus 777 ~~~VYinl~~---es~FveaVA~D~rsf~~~~F~rA~~I~~~k~L~s~~~IE~l~~f~nr~E~~r~~ea~EeED~GDvPD 853 (929)
T COG5113 777 MVMVYINLRS---ESKFVEAVASDKRSFDIDFFRRALRICENKYLISESQIEELRSFINRLEKVRVIEAVEEEDMGDVPD 853 (929)
T ss_pred HHHHhhhhcc---hHHHHHHHHcccccccHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCch
Confidence 9999999995 45799999999999999999999999999988 9999999999999999998777788899999999
Q ss_pred CCCCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHcCCCC
Q 001583 954 EFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKR 1025 (1049)
Q Consensus 954 eflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~lipn~~Lk~~I~~w~~~~~~~~ 1025 (1049)
||+||+|+++|+|||+||.||.++||+||..||+++++|||||.||+.+||+||.+||++|..|.+.++.+.
T Consensus 854 eFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~~KH 925 (929)
T COG5113 854 EFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQKH 925 (929)
T ss_pred hhhCchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCCHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988855
No 2
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-158 Score=1416.74 Aligned_cols=881 Identities=39% Similarity=0.610 Sum_probs=753.8
Q ss_pred chhhHHHHhhcCCCcccChhhhhHHHHHHHhCCCCCCCChhhHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHH
Q 001583 40 LELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKM 119 (1049)
Q Consensus 40 L~~l~~el~~e~~~~~l~~d~ld~~l~~rl~~~~~~~~~~~~YL~~c~~R~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 119 (1049)
...+..++..+|.+.+++.+ |...+.-..+.+ ....++.|+..||.++....++...+++ + +. .+
T Consensus 52 ~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~----------~-~~-~~ 116 (943)
T KOG2042|consen 52 YELFSSDLPADGLSHRFNEA--ESDTLALCTEND-ALNILFIYLYRCKSELSQYKRKECRKPT----------L-EQ-NL 116 (943)
T ss_pred HHhccccccccCCccccchh--hhHHHHhhccch-HHHHHHHHHHHHHHHHHHHhHHHhcCcc----------h-hh-ch
Confidence 33333444444555555444 444444444333 3467789999999999877765533211 1 11 45
Q ss_pred HHhhhhhhccCCCccCCCCCCccccccCCCCCCCCCchhHHHhhcCCCCCCCCCCCCCCCCCChHHHHHHHHhhCCCChH
Q 001583 120 IVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLD 199 (1049)
Q Consensus 120 ~vsY~~~~l~~Pd~F~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~Fl~eli~r~~~d~l~ 199 (1049)
.++++.++...++.+..+.. .+.+.-...+-++.++.. .|...|..|+.++..+++.|.++
T Consensus 117 ~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~d~l~ 177 (943)
T KOG2042|consen 117 KLAGSSFVMITLGVLAPQLR-----LQPASLQDISGLLELMNS--------------EGFARPLLFLLEVTEHFDLDALD 177 (943)
T ss_pred hhccchheeeehhhccchhh-----hhhhhhhhHHHHHHHhhh--------------hhcccchhHHHHHhhhhhhHHHH
Confidence 56666665555555543220 000000001112222211 23335778999999999999999
Q ss_pred HHHHHHHHHHHHHh--hccccccccchHHHHHHHhhCChhhhhhhhcCCcCCCcccCcChhhhhhhcccccccccCCCCC
Q 001583 200 PILKGLYENLRGSV--LNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPD 277 (1049)
Q Consensus 200 ~if~~~~~~l~~~~--~~~s~~~~~~~~l~~l~~L~~~k~ia~~l~~~~~f~P~~~~~~g~~~E~~SlLGp~f~lS~l~~ 277 (1049)
.+|.|+++.+...+ .+++....+..++.++..|++.||+|.+++++|+|+|++ +|++++..|+|||||++|+++.
T Consensus 178 ~if~~vl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~kp~a~l~~~~~~~~p~~---~g~e~~~~s~LGpfls~S~~~~ 254 (943)
T KOG2042|consen 178 AIFNPVLERLESNLDILKLNVLVLENLVLLILLYFVSTKPIADLLVKLPDFLPPP---CGREFELKSFLGPFLSISCLPA 254 (943)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcCCCcHHHHHhhccccCCCC---CCcchhhhhhhccceeeeeccc
Confidence 99999997777544 333444457788999999999999999999999999997 7999999999999999999987
Q ss_pred CccccCCChhhhhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHhchhhhccc
Q 001583 278 HAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVLEYLAEVINRNSSRAHIQ 356 (1049)
Q Consensus 278 ~~~f~~~p~v~~~~F~~~~~~~~~~i~~~~~sl~~~l~~~~~~L~~I~~~Llr-~~~sRe~vL~w~a~~i~~N~~R~~~~ 356 (1049)
++ .. + |.+..+++.........+++..++ ++..+|+|++++|+ |+++|+++|+|+|.|||+|++|+++|
T Consensus 255 ~~------~~--~-y~~~~e~s~~~~~~~~~s~~~~~~-~~~~~~~~v~~ll~~s~etr~~~L~~~a~vi~aN~~R~~~~ 324 (943)
T KOG2042|consen 255 AP------AK--R-YGDFSERSRKNTSEVSSSLLLYHQ-MDRKMLQIVKHLLRLSPETREKTLSYVANVINANDKRASIQ 324 (943)
T ss_pred cc------hh--h-hcccchhhhcchHHHHHHHHHHHH-HHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhccccccccc
Confidence 74 22 2 333333333333344455555555 55999999999999 89999999999999999999999999
Q ss_pred cCCCccCchhhHHHHHHHHHHhhhhhcCCCCccccccccCCcCCCCCCCCCccccccCCHHHHHHHHhcCCCCCCCCCCC
Q 001583 357 VEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKH 436 (1049)
Q Consensus 357 ~d~~~~aSDGFmlNl~~VLlrLc~PF~d~~~~KidKID~~Y~~~~~rvdi~~eTrl~a~~~e~~~~~~~~~p~~~~~~~~ 436 (1049)
+|+..++|||||+|+++||+|||+||+|++.+|++||||+|+...++.+..++|+++++..|+. |++
T Consensus 325 ~~~~~~~sDgfm~Nl~~Vl~rls~p~~~~~~~~~~~~~p~y~~~~~~~~~~~~t~~~~~~~~t~-~~~------------ 391 (943)
T KOG2042|consen 325 VDPREVASDGFMLNLSAVLSRLSEPFLDPSIKKIDKIDPEYLINISKETRSKETELNADDKETC-FYD------------ 391 (943)
T ss_pred CCHHHhhchHHHHHHHHHHHHhcccccccccccccccChHHhcCccHhhhhhhhhhccchhhhh-ccC------------
Confidence 9999999999999999999999999999999999999999999888999999999999988887 874
Q ss_pred CCcchhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 001583 437 FSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTL 516 (1049)
Q Consensus 437 ~~~~e~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFitecFFLT~~~lhlG~~~~~~~~~~l~r~i~~~~~~l 516 (1049)
.++++||+|||||||+++||||+.+++..|.++.+.|.+++..+
T Consensus 392 ------------------------------------~~~~~~F~t~cfFltl~~~~l~~~~~~~~~~~i~~~i~~l~~~i 435 (943)
T KOG2042|consen 392 ------------------------------------KPGEPNFPTECFFLTLAALHLGLLPTCSAFSEINRSLPELKPLI 435 (943)
T ss_pred ------------------------------------CCCCCCcchHHHHHHHHHHHhchhHHHHHHHHHHHHhHHHHHHH
Confidence 22478999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHHHHHHHHhc-C-CCC-CCCCCC
Q 001583 517 ATLKATQGQTP-SSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVG-G-FKM-PLPDTC 592 (1049)
Q Consensus 517 ~~~~~~~~~~~-~~~~~~~l~~~~~~l~~l~~~~~~~~a~~L~dp~l~~~~l~F~~~~~~wL~~l~~-~-~~l-PLp~~~ 592 (1049)
+..+..+++.. .......+.|++++++.+...+.|+++ .+++|.+.++++.|+.+++.||+|+++ + ..+ ++|-.+
T Consensus 436 ~~lk~~~d~~~~a~~~~~~l~r~e~~lk~~~~~k~~~~~-~~~~p~l~~~~~~f~~~~s~~l~~~~~~~~~~~~~~p~~~ 514 (943)
T KOG2042|consen 436 ETLKVIADGYSVANLESADLTRLEKGLKLLSSIKPCLEI-TLLFPSLLQRCLNFYDFMSEGLLRVVDLEMPDSSTLPLNA 514 (943)
T ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhhhhhhh-hhcCcHHHHHhhccHHHHHHHHHHHhhccCCcccCCCCCC
Confidence 98887665422 234457789999999999999999999 789999999999999999999999997 2 222 455578
Q ss_pred CcccccchhHHHHhHHHHHHHHhhc-cccccccchhHHHHHHHHHhCCCCCccChhhHhhHHHHhHhhcCCCCCCcchhH
Q 001583 593 PMEFACMPEHFVEDAMELLIFASRI-PKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATA 671 (1049)
Q Consensus 593 p~~f~~lPE~~iEdi~d~~~f~~r~-p~~l~~~~~~~l~~f~i~fl~s~~~ikNP~LraklvevL~~~~p~~~~~~~~~~ 671 (1049)
|..|+|+|||++||+.+|+.|++++ +..+....++.+++|++.+|++++|+||||||||+||+++ +|...++.+.+.
T Consensus 515 p~~f~~lPE~~vedi~efllf~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~ikNP~l~aKlvevl~--~~~~~~s~~~v~ 592 (943)
T KOG2042|consen 515 PCRFSALPEFFVEDIEEFLLFARKLGKMALDLQRLADIVTFLTVFMTSSMYIKNPYLRAKLVEVLS--MPKPSLSFNAVS 592 (943)
T ss_pred ccccccCchhhcCCHHHHHHHHHHhchhhhccccchhHHHHHHHhcccHhhhcChHHHHHHHHHHh--ccCcccCchHHH
Confidence 8999999999999999999999999 5777788899999999999999999999999999999999 444344455688
Q ss_pred HhhhhchhhHHHHHHHHHHHhhhhcccCCCccchhhhhhhHHHHHHHHHHhCChhHHHHHHHHHHhhchhhHHHHHHHHH
Q 001583 672 TLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLI 751 (1049)
Q Consensus 672 ~lf~~~~~a~~~L~~aLm~fYvdvE~TG~~sqFYdKFn~Ry~I~~Ilk~LW~~~~~r~~l~~~a~~~~~~~FvrFvnlLi 751 (1049)
.+|+.++.+. |+|+||+||||||+||+++|||||||+||+|+.|++++|.+|.|+..+.+.++++ ++.|+||+|+||
T Consensus 593 ~v~~~~~~~~--L~~~llr~yv~ie~tg~s~qfydKfnvr~~i~~i~~~mw~~pa~~~~~~~~~~~~-~~~f~rfvn~l~ 669 (943)
T KOG2042|consen 593 RVIEAHENGG--LVPCLLRFYVDIESTGQSSQFYDKFNVRRNISEILEYMWQDPAYRGEFMDEAKDA-PPVFVRFVNMLL 669 (943)
T ss_pred HHHHhccccc--cchhhhhheeeeecCCCchhHHHHhHHHhhHHHHHHHHhcCccccchhhhhcccc-chHHHHHHHHHh
Confidence 8999888766 9999999999999999999999999999999999999999999999999999885 899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhchhhhhcCCCHHHHHHHHHhHHHhhhhhhhhhhchHHHHHHHHHhHhhccCCCCch
Q 001583 752 NDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLP 831 (1049)
Q Consensus 752 ND~t~lLDE~L~~L~~I~~~q~e~~d~~~w~~l~~eer~e~~~~l~~~er~ars~~~La~etv~ml~~~T~~i~~~Fl~p 831 (1049)
||+||+|||++.+|.+||++|..++|.++|..++.++|+++.+.+++++|+||+|+.++++|+.||+++|++||++|++|
T Consensus 670 Nd~t~lLDE~l~~L~~i~~iq~~~kn~~q~~~~~~~~~e~~~~~l~s~~r~art~~~la~et~~ll~~~tk~i~~~Fl~~ 749 (943)
T KOG2042|consen 670 NDATFLLDESLSELMEIHQIQPSGKNIDQWTKLKREEREAKWGRLASDERQARTGLALANETIDLLHLLTKAIPEPFLLP 749 (943)
T ss_pred hhHHHHHhHHHHHhhhhhhhhhhhhhhhhccCCcHHHHHHHHhccccchhhhcccceeccchhhHHHHHHhhcchhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccCCcccCCChHHHHHHHHHHHHHhccCCCCcchhhhhhccCCcCcHHHHHHHH
Q 001583 832 EMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAA 911 (1049)
Q Consensus 832 eivdRlA~MLny~L~~LvGPk~~~LKVknpekY~F~Pk~lL~~i~~iYlnL~~~~~~~~F~~aVa~DgRsy~~elF~~a~ 911 (1049)
|+|+|+|+||||||.+||||||++||||||++|+|+|+++|++|++||+||++ ++.|+.|||.|||||++++|..|.
T Consensus 750 elv~rla~MLN~nL~~lvGPK~~~Lkvkdp~~y~fePk~ll~~i~~iYlnl~~---~~~F~~avA~D~RSys~~lF~~a~ 826 (943)
T KOG2042|consen 750 ELVERLAAMLNYNLSQLVGPKCSDLKVKDPEKYGFEPKQLLSQLSDIYLNLSS---EPSFVEAVAKDGRSYSEELFNHAI 826 (943)
T ss_pred hHHHHHHHHHhhhHHHhhCCcccccccCCccccCCChHHHHHHHHHHHHhhcc---chhHHHHHhccccccCHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999994 357999999999999999999999
Q ss_pred HHHHhhcC-ChHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCccccccCceecCCCCeeecHHHHHHHHhcCC
Q 001583 912 DVLWKIGE-DGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA 990 (1049)
Q Consensus 912 ~il~~~~l-~~~~i~~~~~l~~~~~~~~~~~~~~e~~~~~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~ 990 (1049)
++++|.++ +..+|++|..|++++++.....+++|++++|+||||+||||+++|+|||+||++|+|+||++|.+||++++
T Consensus 827 ~~~~k~~l~~~~~Ie~~s~la~~~~~~~~~~~~eee~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~ 906 (943)
T KOG2042|consen 827 SILRKRILKSSRQIEEFSELAERVEATASIDAEEEEELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDC 906 (943)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCC
Confidence 99977777 77799999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred CCCCCCCCCCCCCccccHHHHHHHHHHHHHcCCCC
Q 001583 991 TDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKR 1025 (1049)
Q Consensus 991 ~dP~tr~pL~~~~lipn~~Lk~~I~~w~~~~~~~~ 1025 (1049)
+|||||+|||+++++||.+||++|+.|..+++.++
T Consensus 907 tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~~~~ 941 (943)
T KOG2042|consen 907 TDPFNREPLTEDMVSPNEELKAKIRCWIKEKRNKK 941 (943)
T ss_pred CCccccccCchhhcCCCHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999988754
No 3
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C terminus, (IPR003613 from INTERPRO), which has ligase activity. Ubiquitin conjugation factor E4 is involved in N-terminal ubiquitin fusion degradation proteolytic pathway (UFD pathway). E4 binds to the ubiquitin moieties of preformed conjugates and catalyses ubiquitin chain assembly in conjunction with E1, E2, and E3. E4 appears to influence the formation and topology of the multi-Ub chain as it enhances ubiquitination at 'Lys-48' but not at 'Lys-29' of the N-terminal Ub moiety.; GO: 0034450 ubiquitin-ubiquitin ligase activity, 0006511 ubiquitin-dependent protein catabolic process, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 2KRE_A 3M63_A 2QIZ_A 2QJ0_A 3M62_A.
Probab=100.00 E-value=8.4e-150 Score=1355.26 Aligned_cols=606 Identities=42% Similarity=0.768 Sum_probs=518.9
Q ss_pred cccccccCCCCCCccccCCChhhhhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHH
Q 001583 266 LGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVLEYLAE 344 (1049)
Q Consensus 266 LGp~f~lS~l~~~~~f~~~p~v~~~~F~~~~~~~~~~i~~~~~sl~~~l~~~~~~L~~I~~~Llr-~~~sRe~vL~w~a~ 344 (1049)
|||||++||+|++ +|.++..||.++..++++++++++.+||..++.+++.||+|+++||| |+++|++||+|||.
T Consensus 1 LGp~l~~S~~~~~-----~~~~~~~~F~~~~~~~~~~~~~~~~~lr~~l~~~~~~l~~i~~~LLr~s~~sR~~~L~w~a~ 75 (629)
T PF10408_consen 1 LGPFLSLSPLPDD-----QPEVAEQFFSNPSKRNQQDVESSISSLRQELQNIQDQLHQIFKSLLRASPESRERVLSWFAQ 75 (629)
T ss_dssp THHHHT--TTS--------HHHHHHHTTT-TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred CCCCeecCCCCCC-----ccHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Confidence 8999999999987 48999999999999999999999999999999999999999999999 79999999999999
Q ss_pred HHHhchhhhcc--ccCCCccCchhhHHHHHHHHHHhhhhhcCCCCccccccccCC----cCC--CCCCCCCccccccCCH
Q 001583 345 VINRNSSRAHI--QVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKY----VFY--SSRLDLRSLTALHASS 416 (1049)
Q Consensus 345 ~i~~N~~R~~~--~~d~~~~aSDGFmlNl~~VLlrLc~PF~d~~~~KidKID~~Y----~~~--~~rvdi~~eTrl~a~~ 416 (1049)
|++.|++|+|| ++|+..+||||||+|+++||+|||+||+|+..+|++||||+| +.+ ++++|+++||||+++.
T Consensus 76 ~l~~N~~R~k~~~~~~~~~~aSDGFmlNl~~VLl~L~~Pf~~~~~~K~~kID~~Y~~~~~~~~~~~~vd~~~eT~l~~~~ 155 (629)
T PF10408_consen 76 ILNANAKRAKMWLQVDPRTVASDGFMLNLTAVLLRLCQPFMDPSFSKIDKIDPDYCAHPLLRPRNSRVDISEETRLNATE 155 (629)
T ss_dssp HHHT-GGGGSS--S--GGGS--HHHHHHHHHHHHHHHGGGGSTT-TTGGGS-TTT-----TSS--SSS--TT--BSSB-H
T ss_pred HHHhchhhhhhhhccccccCCCcHHHHHHHHHHHHHHHhhhhhhhhhHhhcCcchhhhhhccccccccCcccccccCCCh
Confidence 99999999999 999999999999999999999999999999999999999999 455 8999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCcchhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhhh
Q 001583 417 EEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLL 496 (1049)
Q Consensus 417 ~e~~~~~~~~~p~~~~~~~~~~~~e~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFitecFFLT~~~lhlG~~ 496 (1049)
+++++|++... ..+++||||||||||++++|||++
T Consensus 156 ~e~~~~~~~~~---------------------------------------------~~~~~nFiTe~FFLT~~a~hlg~~ 190 (629)
T PF10408_consen 156 EESEEWYEDLP---------------------------------------------NPGPPNFITECFFLTLRALHLGLL 190 (629)
T ss_dssp HHHHHHHHHCT---------------------------------------------TSTS--HHHHHHHHHHHHHHHTHH
T ss_pred hHHhhhhcccc---------------------------------------------cCCCCCchHHHHHHHHHHHHHhHH
Confidence 99999997542 223489999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHHHH
Q 001583 497 KAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVW 576 (1049)
Q Consensus 497 ~~~~~~~~l~r~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~a~~L~dp~l~~~~l~F~~~~~~w 576 (1049)
+++.+|+++.|+++++++.++++++. ..+++++++++.+.+.++|++| +|+||++++++++|+++++.|
T Consensus 191 ~~~~~~~~~~r~l~~lq~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~e~-~L~~p~~~~~~~~F~~~~~~w 259 (629)
T PF10408_consen 191 PAIQRYKRLLRELRRLQRELEELEAS----------AQLKRLKEQLDKLMSEKLSLEA-VLLDPDFLSRCLQFYNFVAQW 259 (629)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHHHHHHHHH-HHT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988642 5778999999999999999999 799999999999999999999
Q ss_pred HHHHhc---------CCCCCCCCCCCcccccchhHHHHhHHHHHHHHhhc---cccccccchhHHHHHHHHHhCCCCCcc
Q 001583 577 LVDLVG---------GFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRI---PKALDGVLLDDFMNFIIMFMASPKYIR 644 (1049)
Q Consensus 577 L~~l~~---------~~~lPLp~~~p~~f~~lPE~~iEdi~d~~~f~~r~---p~~l~~~~~~~l~~f~i~fl~s~~~ik 644 (1049)
|+++++ ++.+|||+++|+.|++||||+||||+||+.|++|+ |..+.+..++++++|+|+||++|+||+
T Consensus 260 L~~~~~~~~~~~~~~~~~~Plp~~~p~~f~~lPE~~iedi~d~~~f~~~~~~~~~~l~~~~~~~l~~f~i~fm~s~~~ik 339 (629)
T PF10408_consen 260 LLRLADPSNQYPENKPPKLPLPEEPPPQFAYLPEFFIEDIVDFLLFLRRFNNSPDLLSSQDLDELVTFCITFMGSPEYIK 339 (629)
T ss_dssp HHHHHSTT--TTS-S---S-SS----TTGGGSBTHHHHHHHHHHHHHTTSTT-TTTT-T-THHHHHHHHHHHHH-TTS--
T ss_pred HHHHhcccccccccCCcCCCCCCCCChHHHhCCHHHHHHHHHHHHHHHHhcCChhhhhhhhHHHHHHHHHHHhCChhhcC
Confidence 999993 37789999999999999999999999999999998 788889999999999999999999999
Q ss_pred ChhhHhhHHHHhHhhcCCCC-CCcchhHHhhhhchhhHHHHHHHHHHHhhhhcccCCCccchhhhhhhHHHHHHHHHHhC
Q 001583 645 NPYLRSKMVEVLNCWMPRRS-GSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQ 723 (1049)
Q Consensus 645 NP~LraklvevL~~~~p~~~-~~~~~~~~lf~~~~~a~~~L~~aLm~fYvdvE~TG~~sqFYdKFn~Ry~I~~Ilk~LW~ 723 (1049)
|||||||+||+|+.++|... +..|.+.++|++||++++||+||||+||||||+||+|+|||||||+||+|+.||++||+
T Consensus 340 NP~LraklvevL~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~sLm~~yidvE~Tg~~~qfydKFn~R~~i~~il~~lw~ 419 (629)
T PF10408_consen 340 NPHLRAKLVEVLFSLLPPDRDGRRGVLGSLFESHPLAQEHLVPSLMKFYIDVEKTGASTQFYDKFNIRYHISQILKYLWK 419 (629)
T ss_dssp -HHHHHHHHHHHHHCCS--TTS---TTHHHHHH-HHHHCCHHHHHHHHHHHCCCT-SSSSSTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCcccccccccHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCccchhcccchhhHHHHHHHHcC
Confidence 99999999999999888766 55677888999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhhchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhcCCCHHHHHHHHHhHHHhhhhh
Q 001583 724 VPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENII 803 (1049)
Q Consensus 724 ~~~~r~~l~~~a~~~~~~~FvrFvnlLiND~t~lLDE~L~~L~~I~~~q~e~~d~~~w~~l~~eer~e~~~~l~~~er~a 803 (1049)
+|.||++|+++++++ +++|+|||||||||+||||||||++|++||++|.+++|.++|+++++|+|+++++.++++||+|
T Consensus 420 ~~~~r~~~~~~~~~~-~~~F~rFvn~liND~~~llDE~l~~L~~I~~~q~~~~d~~~w~~~~~~~r~~~~~~l~~~e~~~ 498 (629)
T PF10408_consen 420 NPEYREQFIKEAKEN-PPLFVRFVNMLINDTTFLLDESLSKLKEIKELQEEMADQSEWNALSQEERQEKESQLEQAERQA 498 (629)
T ss_dssp -HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999984 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchHHHHHHHHHhHhhccCCCCchHHHHHHHHHHHHHHHHhhccccccccccCCcccCCChHHHHHHHHHHHHHhc
Q 001583 804 RIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLA 883 (1049)
Q Consensus 804 rs~~~La~etv~ml~~~T~~i~~~Fl~peivdRlA~MLny~L~~LvGPk~~~LKVknpekY~F~Pk~lL~~i~~iYlnL~ 883 (1049)
|||++||++|++||+++|+++|+||++||||+|||+||||||++||||||++||||||++|||+||+||.+||+||+||+
T Consensus 499 rs~~~l~~~t~~~l~~lt~~~~~~Fl~~elv~RlA~MLn~~L~~L~Gpk~~~LkVk~~~~y~F~P~~ll~~i~~iy~~l~ 578 (629)
T PF10408_consen 499 RSYLQLANETLKMLNYLTSEIPEPFLRPELVDRLAAMLNYNLDQLVGPKCSELKVKNPEKYGFDPKELLSQIVDIYLNLS 578 (629)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-GGGGCSHHHHHHHHHHHHHHHHHHHSHHHHT---SSGGGGT--HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHHHcCCchhcccCCChhhcCCcHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCcchhhhhhccCCcCcHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHH
Q 001583 884 RGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGE-DGRIIQEFIELGAKAKA 936 (1049)
Q Consensus 884 ~~~~~~~F~~aVa~DgRsy~~elF~~a~~il~~~~l-~~~~i~~~~~l~~~~~~ 936 (1049)
+. ++|++|||+|||||++++|++|++||++.|+ +++++++|.+|+++|++
T Consensus 579 ~~---~~F~~ava~D~Rsy~~~lf~~a~~~l~~~~l~~~~~i~~f~~l~~~ve~ 629 (629)
T PF10408_consen 579 DS---DKFVQAVANDGRSYSPELFEKAVRILRRIGLKSEDEIEKFEELAKKVEE 629 (629)
T ss_dssp T----HHHHHHHHH-TTT--HHHHHHHHHHHTTSTSSTHHHHHHHHHHCCHHHH
T ss_pred Cc---hHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC
Confidence 54 3699999999999999999999999999998 99999999999999874
No 4
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.82 E-value=7.7e-21 Score=169.83 Aligned_cols=71 Identities=52% Similarity=0.789 Sum_probs=63.1
Q ss_pred CCCCCCCCCccccccCceecCCCCeeecHHHHHHHHhc-CCCCCCCCCCCCCCCccccHHHHHHHHHHHHHcC
Q 001583 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS-DATDPFNRSHLTADMLIPNTELKAKIEEFIKSQG 1022 (1049)
Q Consensus 951 iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~-~~~dP~tr~pL~~~~lipn~~Lk~~I~~w~~~~~ 1022 (1049)
||++|+||||++||+|||++|+| |||||++|++||.. +.+||+||++++.++|+||..||+.|++|+++++
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G-~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSG-HTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTS-EEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcC-CEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 79999999999999999999999 99999999999999 7899999999999999999999999999999875
No 5
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.58 E-value=2e-15 Score=130.17 Aligned_cols=63 Identities=52% Similarity=0.788 Sum_probs=61.4
Q ss_pred CCCCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHH
Q 001583 954 EFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEF 1017 (1049)
Q Consensus 954 eflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~lipn~~Lk~~I~~w 1017 (1049)
+|.|||+.++|+|||++|+| |+|||++|.+|+.++++||+||++++.++++||..||++|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G-~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSG-QTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCC-CEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 68999999999999999999 9999999999999988999999999999999999999999998
No 6
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.3e-09 Score=117.96 Aligned_cols=391 Identities=19% Similarity=0.207 Sum_probs=231.3
Q ss_pred HHHHHHhcCCCCCCCCCCCcccccchhHHHHhHHHHHHHHhhc--c-cc-ccc----cchhHHHHHHHHHhCCCCCccCh
Q 001583 575 VWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRI--P-KA-LDG----VLLDDFMNFIIMFMASPKYIRNP 646 (1049)
Q Consensus 575 ~wL~~l~~~~~lPLp~~~p~~f~~lPE~~iEdi~d~~~f~~r~--p-~~-l~~----~~~~~l~~f~i~fl~s~~~ikNP 646 (1049)
.||++.+-. ++.--+..-..|+.+||+|+......+.-+..| | +. ++. ...+-..+|.-+....| +|--.
T Consensus 2 ~wll~~~lr-tl~~~~~tgslfsfvpe~yvn~~~~~~~av~d~~~~l~a~~e~~~~e~sv~~~a~~l~~h~ad~-riv~a 79 (489)
T KOG4692|consen 2 IWLLERMLR-TLTTASNTGSLFSFVPEVYVNTLPILLDAVMDFSHDLKAQFEASDAECSVNAAAEFLGIHSADP-RIVLA 79 (489)
T ss_pred hHHHHHHHH-HhhccCCCcchhhhchHHHHHhhHHHHHHHHHhCcchhhhhcCCCchhhHHHHHHHHhhccCCc-eeeec
Confidence 477765521 000112233569999999999988888877776 3 11 222 23344456666656666 66667
Q ss_pred hhHhhHHHHhHhhcCCCCCCcchhHHhhhhchhhHHHHHHHHHHHhhh---hccc--------CCCccchhhhhhhHHH-
Q 001583 647 YLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVD---IEFT--------GSHTQFYDKFNIRHNI- 714 (1049)
Q Consensus 647 ~LraklvevL~~~~p~~~~~~~~~~~lf~~~~~a~~~L~~aLm~fYvd---vE~T--------G~~sqFYdKFn~Ry~I- 714 (1049)
..|..|.+.|..+.-.+.| +..+=...+-.+-.|+.+|+.-|-. +..+ | +.| .||++=
T Consensus 80 ~~kdsllqal~t~~c~~~~----vraler~~k~sq~smvraLLapyenR~W~q~nwillRlw~G--~Gf----~y~~~r~ 149 (489)
T KOG4692|consen 80 SCKDSLLQALGTLTCHKSG----VRALERTSKRSQASMVRALLAPYENRSWIQVNWILLRLWKG--SGF----SYLKNRE 149 (489)
T ss_pred hhHHHHHHHhhheeechhh----hhHHHhccHhhHHHHHHHHhhhhhcCCchhhhHHHHHHHcc--CCc----cccccCC
Confidence 7888899999765443332 2222223444555677777777743 1110 1 112 222211
Q ss_pred HHHHHHHhCChh-----------HHHHHHHHHHhhchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhhhcC
Q 001583 715 AELLEYLWQVPS-----------HRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWER 783 (1049)
Q Consensus 715 ~~Ilk~LW~~~~-----------~r~~l~~~a~~~~~~~FvrFvnlLiND~t~lLDE~L~~L~~I~~~q~e~~d~~~w~~ 783 (1049)
.++++.=-.|.. |-+++.+.+--+++++-..|+|.++|-.+|-..|....+.||.+.-+.|++..
T Consensus 150 phl~rsr~~n~~~~sl~~p~pst~fQ~ll~a~ll~dgp~a~tFLNsvlnqLnWafsEFi~~vqEiQ~~aqr~E~~~---- 225 (489)
T KOG4692|consen 150 PHLCRSRSRNETHTSLSSPAPSTVFQALLRAALLNDGPLASTFLNSVLNQLNWAFSEFIVSVQEIQEKAQRMENTL---- 225 (489)
T ss_pred chhhhhhhcccccccccCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhc----
Confidence 123332222221 22233322222246788999999999999999999997777666554443221
Q ss_pred CCHHHHHHHHHhHHHhhhhhhhhhhchHHHHHHHHHhHhhccCCCCc------hHHHHHHHHHHHHHHHHhhcccc-ccc
Q 001583 784 RPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLL------PEMIERVASMLNYFLLQLVGPQR-KSL 856 (1049)
Q Consensus 784 l~~eer~e~~~~l~~~er~ars~~~La~etv~ml~~~T~~i~~~Fl~------peivdRlA~MLny~L~~LvGPk~-~~L 856 (1049)
.-..+.+.|-.-+.|+-..++.|++.+...|+.|+. .-+.+||+..||..|.....|.. ..-
T Consensus 226 -----------~e~~Qlk~C~~cFeLsvsL~RvLEm~it~~Peifld~trpns~~Ll~ri~qllnqvlsrVt~e~~lf~r 294 (489)
T KOG4692|consen 226 -----------FEPFQLKKCCVCFELSVSLARVLEMCITAMPEIFLDGTRPNSRRLLERILQLLNQVLSRVTDEFFLFVR 294 (489)
T ss_pred -----------cCHHHHhHhhhhHHHHHHHHHHHHHHHHhhhHHHhcCCCCcHHHHHHHHHHHHHHHHHhhccccchhHH
Confidence 001234578788899999999999999999999985 34689999999999988776553 222
Q ss_pred cc----cCCcccCCChHHHHHHHHHHHHHhccCCCCcc-hhhh------hhccCCcCcHHHHHHHHHH------------
Q 001583 857 TL----KDPEKYEFRPKQLLKQIVCIYVHLARGDTQNL-FPAA------ISSDGRSYNEQLFSAAADV------------ 913 (1049)
Q Consensus 857 KV----knpekY~F~Pk~lL~~i~~iYlnL~~~~~~~~-F~~a------Va~DgRsy~~elF~~a~~i------------ 913 (1049)
.| ..-++..-- -+|..++.|.+||...+.+.+ =-++ +.-|.-+|.---|.-++..
T Consensus 295 vv~~~~~~le~V~hy--pil~a~~GIll~Ll~~~~~S~~r~Q~~~~~~~a~l~dP~fq~~~~~ylLg~~~pdpp~p~t~~ 372 (489)
T KOG4692|consen 295 VVRRQGQPLEKVSHY--PILAALVGILLNLLEASEDSKPRQQHDVIGLFASLDDPDFQYYGFQYLLGYNWPDPPDPLTDG 372 (489)
T ss_pred HHHhhcCChhhhccc--chHHHHHHHHHHHHHhCcccCcccchhhhhhheeccCcchHHHHHHHHHhcCCCCCCCccccC
Confidence 22 122333222 488999999999975421111 1111 2233334433333333332
Q ss_pred -----------HHhhcC-ChHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCC--CCCCCCCccccccCceecCCCCeeecH
Q 001583 914 -----------LWKIGE-DGRIIQEFIELGAKAKAAASEAMDAEAALGDIP--DEFLDPIQYTLMKDPVILPSSRITVDR 979 (1049)
Q Consensus 914 -----------l~~~~l-~~~~i~~~~~l~~~~~~~~~~~~~~e~~~~~iP--deflcPI~~~lM~DPV~lp~g~~t~dR 979 (1049)
-++.|. +..++...+.+...+.+ .+++..-.+.| |+=+||||+.=--..|+.||| |--|.
T Consensus 373 ~p~pd~krfal~~~~~~~s~~e~~~V~r~~~~l~~-----~~~~~~~~~lp~sEd~lCpICyA~pi~Avf~PC~-H~SC~ 446 (489)
T KOG4692|consen 373 CPSPDDKRFALVKKLGQLSNFESHLVNRASSQLPE-----RKEESFNKDLPDSEDNLCPICYAGPINAVFAPCS-HRSCY 446 (489)
T ss_pred CCCCCccchHHhhhhhhhhHHHHHHHHHHHhhcch-----hhHHhhcCCCCCcccccCcceecccchhhccCCC-CchHH
Confidence 011111 22222222222222221 12233334455 456999999999999999999 99999
Q ss_pred HHHHHHHhcCCCCCCCCCCCC
Q 001583 980 PVIQRHLLSDATDPFNRSHLT 1000 (1049)
Q Consensus 980 ~~I~~~L~~~~~dP~tr~pL~ 1000 (1049)
.||.+||++...|-||.....
T Consensus 447 ~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 447 GCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred HHHHHHHhcCCeeeEecceee
Confidence 999999999999999987654
No 7
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4.8e-11 Score=126.84 Aligned_cols=79 Identities=39% Similarity=0.543 Sum_probs=73.4
Q ss_pred hhcCCCCCCCCCCCccccccCceecCCCCeeecHHHHHHHHhcC-CCCCCCCCCCCCCCccccHHHHHHHHHHHHHcCCC
Q 001583 946 AALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLK 1024 (1049)
Q Consensus 946 ~~~~~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~-~~dP~tr~pL~~~~lipn~~Lk~~I~~w~~~~~~~ 1024 (1049)
..-.++||.++|-|+.+||+|||+.|+| .||||..|.+||..- ..||.||.||+..+++||..||..|++|++.+..+
T Consensus 203 rk~rEvpd~lcgkIt~el~~~pvi~psg-Ity~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 203 RKKREVPDYLCGKITLELMREPVITPSG-ITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWA 281 (284)
T ss_pred hccccccchhhhhhhHHhhcCCccCccc-cchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcccc
Confidence 3347899999999999999999999999 999999999999995 49999999999999999999999999999998765
Q ss_pred C
Q 001583 1025 R 1025 (1049)
Q Consensus 1025 ~ 1025 (1049)
.
T Consensus 282 ~ 282 (284)
T KOG4642|consen 282 D 282 (284)
T ss_pred c
Confidence 3
No 8
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.44 E-value=2.4e-07 Score=107.02 Aligned_cols=73 Identities=21% Similarity=0.175 Sum_probs=67.6
Q ss_pred cCCCCCCCCCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHc
Q 001583 948 LGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 1021 (1049)
Q Consensus 948 ~~~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~lipn~~Lk~~I~~w~~~~ 1021 (1049)
+.++.+.+.||||.+++++||++||| |+||+.||.+|+.....||.||.++....+.+|..|.+.|+.|+..+
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpCg-H~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSCS-HTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCCC-CchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 45677889999999999999999999 99999999999998889999999999999999999999999998643
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.38 E-value=2e-07 Score=97.55 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=56.3
Q ss_pred hhhcCCCCCCCCCCCccccccCceecCCCCeeecHHHHHHHHhc----------------CCCCCCCCCCCCCCCccccH
Q 001583 945 EAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS----------------DATDPFNRSHLTADMLIPNT 1008 (1049)
Q Consensus 945 e~~~~~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~----------------~~~dP~tr~pL~~~~lipn~ 1008 (1049)
+..+.+..++|.||||.+.++|||+++|| |+||+.||.+|+.. ...||.||.+++...++|..
T Consensus 9 ~~~~~~~~~~~~CpICld~~~dPVvT~CG-H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 9 DTTLVDSGGDFDCNICLDQVRDPVVTLCG-HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred cceeccCCCccCCccCCCcCCCcEEcCCC-chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 34456777889999999999999999999 99999999999852 24899999999999999985
Q ss_pred HH
Q 001583 1009 EL 1010 (1049)
Q Consensus 1009 ~L 1010 (1049)
.-
T Consensus 88 gr 89 (193)
T PLN03208 88 GR 89 (193)
T ss_pred cc
Confidence 43
No 10
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.93 E-value=4.7e-06 Score=71.51 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=32.4
Q ss_pred CCCCCCCCCccccccCceecCCCCeeecHHHHHHHHhcC--CCCCCCC
Q 001583 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD--ATDPFNR 996 (1049)
Q Consensus 951 iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~--~~dP~tr 996 (1049)
---.+.||||...|+|||....++|+|||++|.+||.++ ..||..+
T Consensus 8 ~~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 8 GTISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp SB--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred cEeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 344689999999999999986555999999999999443 4999854
No 11
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.85 E-value=6.4e-06 Score=93.92 Aligned_cols=52 Identities=19% Similarity=0.389 Sum_probs=49.8
Q ss_pred CCCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccc
Q 001583 955 FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIP 1006 (1049)
Q Consensus 955 flcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~lip 1006 (1049)
++|.|++++-++||+.|-|||+|||+-|++|+..+++||.|++||++++|+|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeee
Confidence 5799999999999999999999999999999999999999999999999984
No 12
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.73 E-value=5.1e-05 Score=82.81 Aligned_cols=101 Identities=23% Similarity=0.261 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHhhhc-CCCCCC-CCCCCccccccCceecCCCCeeecHHHHHHHHh-cCCCCCCCC
Q 001583 920 DGRIIQEFIELGAKAKAAASEAMDAEAAL-GDIPDE-FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLL-SDATDPFNR 996 (1049)
Q Consensus 920 ~~~~i~~~~~l~~~~~~~~~~~~~~e~~~-~~iPde-flcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~-~~~~dP~tr 996 (1049)
-..+++.|+...++-+...+ ..++.+ +..|+- +.||+|..|.++||.+|||+|+||..||..-|+ ++..||.|.
T Consensus 241 ~qpdvqsWe~Yq~r~~a~~~---~~Dqv~k~~~~~i~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~ 317 (427)
T COG5222 241 AQPDVQSWEKYQQRTKAVAE---IPDQVYKMQPPNISLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCS 317 (427)
T ss_pred eccchHHHHHHHHHHHhhhh---CchhhhccCCCCccccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcc
Confidence 44567777766554443222 111122 122221 899999999999999999999999999998555 578999986
Q ss_pred C-CCCCCCccccHHHHHHHHHHHHHcCC
Q 001583 997 S-HLTADMLIPNTELKAKIEEFIKSQGL 1023 (1049)
Q Consensus 997 ~-pL~~~~lipn~~Lk~~I~~w~~~~~~ 1023 (1049)
. .+-++.|.|+.+.+..|+.+++.++.
T Consensus 318 rkdvlld~l~pD~dk~~EvE~~lkkq~~ 345 (427)
T COG5222 318 RKDVLLDGLTPDIDKKLEVEKALKKQRK 345 (427)
T ss_pred cccchhhccCccHHHHHHHHHHHHHHHH
Confidence 4 56789999999999999999985443
No 13
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.53 E-value=5.3e-05 Score=61.06 Aligned_cols=37 Identities=32% Similarity=0.444 Sum_probs=29.4
Q ss_pred CCCccccccCceecCCCCeeecHHHHHHHHhcCC----CCCC
Q 001583 957 DPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA----TDPF 994 (1049)
Q Consensus 957 cPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~----~dP~ 994 (1049)
|||+.++++|||.|++| |+|++++|.+|..+.. .||.
T Consensus 1 CpiC~~~~~~Pv~l~CG-H~FC~~Cl~~~~~~~~~~~~~CP~ 41 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCG-HSFCRSCLERLWKEPSGSGFSCPE 41 (42)
T ss_dssp ETTTTSB-SSEEE-SSS-SEEEHHHHHHHHCCSSSST---SS
T ss_pred CCccchhhCCccccCCc-CHHHHHHHHHHHHccCCcCCCCcC
Confidence 79999999999999999 9999999999877642 4665
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.51 E-value=7.8e-05 Score=58.84 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=32.7
Q ss_pred CCCccccccCc-eecCCCCeeecHHHHHHHHhcCCCCCCC
Q 001583 957 DPIQYTLMKDP-VILPSSRITVDRPVIQRHLLSDATDPFN 995 (1049)
Q Consensus 957 cPI~~~lM~DP-V~lp~g~~t~dR~~I~~~L~~~~~dP~t 995 (1049)
|||+.+.+.|| |++++| |+|++++|.+|+.++.+||++
T Consensus 1 C~iC~~~~~~~~~~~~CG-H~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCG-HSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTS-EEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCC-CchhHHHHHHHHHCcCCCcCC
Confidence 79999999999 578888 999999999999998899974
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.39 E-value=0.00013 Score=60.64 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=41.7
Q ss_pred CCCCCCCccccccCceecCCCCee-ecHHHHHHHHhcCCCCCCCCCCCC
Q 001583 953 DEFLDPIQYTLMKDPVILPSSRIT-VDRPVIQRHLLSDATDPFNRSHLT 1000 (1049)
Q Consensus 953 deflcPI~~~lM~DPV~lp~g~~t-~dR~~I~~~L~~~~~dP~tr~pL~ 1000 (1049)
|+..|+|+.+-+.++|++|+| |. ++..++.+|+.+..+||++|++++
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCG-HLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTC-EEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCC-ChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 357899999999999999999 99 999999999999999999999875
No 16
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.38 E-value=0.0002 Score=78.17 Aligned_cols=49 Identities=12% Similarity=0.005 Sum_probs=41.3
Q ss_pred CCCCCCCCCccccccCc--------eecCCCCeeecHHHHHHHHhcCCCCCCCCCCCC
Q 001583 951 IPDEFLDPIQYTLMKDP--------VILPSSRITVDRPVIQRHLLSDATDPFNRSHLT 1000 (1049)
Q Consensus 951 iPdeflcPI~~~lM~DP--------V~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~ 1000 (1049)
..++..||||.+.+.+| |+++|| |+|++.||.+|+...++||.||.++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~-H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCN-HVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCC-CcccHHHHHHHHhcCCCCCCCCCEee
Confidence 45567899999977664 456677 99999999999999999999999876
No 17
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.24 E-value=0.00016 Score=80.34 Aligned_cols=67 Identities=21% Similarity=0.160 Sum_probs=62.5
Q ss_pred CCCCCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHH
Q 001583 953 DEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKS 1020 (1049)
Q Consensus 953 deflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~lipn~~Lk~~I~~w~~~ 1020 (1049)
+-+.|-||++-++-|||+||| ||||--||+.||...+.||.|+.+.+..+|.-|.-|-+.|+.|..-
T Consensus 22 ~lLRC~IC~eyf~ip~itpCs-HtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCS-HTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNFA 88 (442)
T ss_pred HHHHHhHHHHHhcCceecccc-chHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHHH
Confidence 446799999999999999999 9999999999999999999999999999999999999999987644
No 18
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.12 E-value=0.00032 Score=57.00 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=21.9
Q ss_pred CCCccccccC----ceecCCCCeeecHHHHHHHHhcC
Q 001583 957 DPIQYTLMKD----PVILPSSRITVDRPVIQRHLLSD 989 (1049)
Q Consensus 957 cPI~~~lM~D----PV~lp~g~~t~dR~~I~~~L~~~ 989 (1049)
|||+.+ |.+ ||+||+| |+|+|.+|.+++.++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CG-H~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCG-HVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS--EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCc-cHHHHHHHHHHHhcC
Confidence 899999 999 9999988 999999999998864
No 19
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.08 E-value=0.00016 Score=63.18 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=33.0
Q ss_pred CCCCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHH
Q 001583 954 EFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKI 1014 (1049)
Q Consensus 954 eflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~lipn~~Lk~~I 1014 (1049)
-+.|+++.++|+.||.+-.+.|+|+..+|.+.+.+ .||.++.|-...|+.-|..|-+.|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHHHhhhhhhccC
Confidence 46799999999999987656699999999887664 499999999999999999998766
No 20
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00049 Score=74.43 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=61.9
Q ss_pred CCCCCCCCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHcCCCC
Q 001583 950 DIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKR 1025 (1049)
Q Consensus 950 ~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~lipn~~Lk~~I~~w~~~~~~~~ 1025 (1049)
...+++.||||.+.+++|+++||| |+|||.||.++....-.||.||. ... .+.+|..|.+.++.+...+....
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~-H~~c~~C~~~~~~~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~~~~ 81 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCG-HNFCRACLTRSWEGPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRLSRP 81 (386)
T ss_pred hccccccChhhHHHhhcCcccccc-chHhHHHHHHhcCCCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCCccc
Confidence 456789999999999999999999 99999999998773359999996 222 88899999999999987765544
No 21
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00039 Score=74.56 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=51.8
Q ss_pred CCCCCCCCccccccCceecCCCCeeecHHHHHHHHhcC---CCCCCCCCCCCCCCccccHH
Q 001583 952 PDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD---ATDPFNRSHLTADMLIPNTE 1009 (1049)
Q Consensus 952 PdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~---~~dP~tr~pL~~~~lipn~~ 1009 (1049)
--.|-|-||.++-+|||++.|| |-||=.||-+||... ..||+|+..++.+.|+|-..
T Consensus 45 ~~~FdCNICLd~akdPVvTlCG-HLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCG-HLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCceeeeeeccccCCCEEeecc-cceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 3468999999999999999999 999999999999974 48899999999999998654
No 22
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00058 Score=75.27 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=52.2
Q ss_pred cCCCCCC-CCCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCcc
Q 001583 948 LGDIPDE-FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLI 1005 (1049)
Q Consensus 948 ~~~iPde-flcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~li 1005 (1049)
...+|+. +.|-||-+-+.||--+||| |+||=+||..|......||.||++.+..+++
T Consensus 232 ~~~i~~a~~kC~LCLe~~~~pSaTpCG-HiFCWsCI~~w~~ek~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLENRSNPSATPCG-HIFCWSCILEWCSEKAECPLCREKFQPSKVI 289 (293)
T ss_pred CccCCCCCCceEEEecCCCCCCcCcCc-chHHHHHHHHHHccccCCCcccccCCCccee
Confidence 3456666 9999999999999999999 9999999999999999999999999988775
No 23
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=96.86 E-value=0.00061 Score=74.51 Aligned_cols=67 Identities=16% Similarity=0.067 Sum_probs=62.2
Q ss_pred CCCCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHc
Q 001583 954 EFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 1021 (1049)
Q Consensus 954 eflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~lipn~~Lk~~I~~w~~~~ 1021 (1049)
-+.|-||.+-++-||+++|| ||||--||.+||...+.||.||.+-...-+.-+.-++..++.|...+
T Consensus 25 ~lrC~IC~~~i~ip~~TtCg-HtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r 91 (391)
T COG5432 25 MLRCRICDCRISIPCETTCG-HTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHARNR 91 (391)
T ss_pred HHHhhhhhheeecceecccc-cchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhhhcc
Confidence 46799999999999999999 99999999999999999999999999999999999999999887654
No 24
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.71 E-value=0.00094 Score=53.95 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=33.9
Q ss_pred CCCccccc---cCceecCCCCeeecHHHHHHHHhcCCCCCCCC
Q 001583 957 DPIQYTLM---KDPVILPSSRITVDRPVIQRHLLSDATDPFNR 996 (1049)
Q Consensus 957 cPI~~~lM---~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr 996 (1049)
|||+.+-+ ..++.+++| |+|.+++|.+|+.+..+||++|
T Consensus 3 C~IC~~~~~~~~~~~~l~C~-H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 3 CPICLEEFEDGEKVVKLPCG-HVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp ETTTTCBHHTTSCEEEETTS-EEEEHHHHHHHHHHSSB-TTTH
T ss_pred CcCCChhhcCCCeEEEccCC-CeeCHHHHHHHHHhCCcCCccC
Confidence 88998888 367789987 9999999999999999999986
No 25
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.18 E-value=0.0048 Score=48.82 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=33.5
Q ss_pred CCCccccccCce-ecCCCCeeecHHHHHHHHhc--CCCCCCC
Q 001583 957 DPIQYTLMKDPV-ILPSSRITVDRPVIQRHLLS--DATDPFN 995 (1049)
Q Consensus 957 cPI~~~lM~DPV-~lp~g~~t~dR~~I~~~L~~--~~~dP~t 995 (1049)
|||+.+.+.+|+ ++++| |+|++.+|.+|+.+ ...||.+
T Consensus 1 C~iC~~~~~~~~~~~~C~-H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCG-HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTS-EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCC-CcchHHHHHHHHHhcCCccCCcC
Confidence 799999999999 88988 99999999999994 3488864
No 26
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.00 E-value=0.01 Score=67.00 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=48.3
Q ss_pred CCCCCCCccc-cccCce----ecCCCCeeecHHHHHHHHhcC-CCCCCCCCCCCCCC----ccccHHHHHHHHH
Q 001583 953 DEFLDPIQYT-LMKDPV----ILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTADM----LIPNTELKAKIEE 1016 (1049)
Q Consensus 953 deflcPI~~~-lM~DPV----~lp~g~~t~dR~~I~~~L~~~-~~dP~tr~pL~~~~----lipn~~Lk~~I~~ 1016 (1049)
|+..||+|.+ ....|= +.+|| |.||++||.+++.++ +.||.|+.++.... +.++..+.+.|+-
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CG-H~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~i 74 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-HTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDI 74 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCC-CcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHH
Confidence 5678999996 344552 33677 999999999976654 59999999999877 6677766666654
No 27
>PHA02926 zinc finger-like protein; Provisional
Probab=95.88 E-value=0.0063 Score=65.20 Aligned_cols=57 Identities=11% Similarity=0.033 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCccccccC---------ceecCCCCeeecHHHHHHHHhcC------CCCCCCCCCCCCCCccccH
Q 001583 949 GDIPDEFLDPIQYTLMKD---------PVILPSSRITVDRPVIQRHLLSD------ATDPFNRSHLTADMLIPNT 1008 (1049)
Q Consensus 949 ~~iPdeflcPI~~~lM~D---------PV~lp~g~~t~dR~~I~~~L~~~------~~dP~tr~pL~~~~lipn~ 1008 (1049)
....+|-.|+||.+..-+ +|+.+|+ |+||.+||.+|-... ..||+||++++ -++|+.
T Consensus 165 ~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pSr 236 (242)
T PHA02926 165 YRVSKEKECGICYEVVYSKRLENDRYFGLLDSCN-HIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMSK 236 (242)
T ss_pred HhccCCCCCccCccccccccccccccccccCCCC-chHHHHHHHHHHHhccccCcCCcCCCCcceee--eecccc
Confidence 345567789999987643 3555666 999999999998753 35999999876 455543
No 28
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=95.70 E-value=0.012 Score=46.06 Aligned_cols=43 Identities=28% Similarity=0.385 Sum_probs=37.3
Q ss_pred CCCCccccccCceecC-CCCeeecHHHHHHHHhc-CCCCCCCCCCC
Q 001583 956 LDPIQYTLMKDPVILP-SSRITVDRPVIQRHLLS-DATDPFNRSHL 999 (1049)
Q Consensus 956 lcPI~~~lM~DPV~lp-~g~~t~dR~~I~~~L~~-~~~dP~tr~pL 999 (1049)
.|||+.+.+.+|+.++ +| |.|.+.++.+|+.. ...||.+|.++
T Consensus 1 ~C~iC~~~~~~~~~~~~C~-H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCG-HVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCC-ChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 3899999999999877 66 99999999999998 56899999764
No 29
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.011 Score=61.43 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=44.4
Q ss_pred CCCCCcccccc--CceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccc
Q 001583 955 FLDPIQYTLMK--DPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIP 1006 (1049)
Q Consensus 955 flcPI~~~lM~--DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~lip 1006 (1049)
|-||||.+-.. -||-+.|| |+||+.||+.-+.....||.||..++..++.+
T Consensus 132 ~~CPiCl~~~sek~~vsTkCG-HvFC~~Cik~alk~~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCG-HVFCSQCIKDALKNTNKCPTCRKKITHKQFHR 184 (187)
T ss_pred cCCCceecchhhccccccccc-hhHHHHHHHHHHHhCCCCCCcccccchhhhee
Confidence 89999987764 46668888 99999999999999999999999998877654
No 30
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.036 Score=63.01 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=44.9
Q ss_pred CCCCCCCCCcccc-ccC------------ceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCcccc
Q 001583 951 IPDEFLDPIQYTL-MKD------------PVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPN 1007 (1049)
Q Consensus 951 iPdeflcPI~~~l-M~D------------PV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~lipn 1007 (1049)
.-++=.|-||.+- |.- |=.|||| |++--+|++.|+.+.++||.||.|+--++=-|-
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-HilHl~CLknW~ERqQTCPICr~p~ifd~~~~~ 352 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-HILHLHCLKNWLERQQTCPICRRPVIFDQSSPT 352 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccccc-ceeeHHHHHHHHHhccCCCcccCccccccCCCC
Confidence 3455678888865 433 4789999 999999999999999999999999876655443
No 31
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.23 E-value=0.014 Score=68.63 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCccccccCceec-CCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccc-cHHHHHHHHHHHHHc
Q 001583 949 GDIPDEFLDPIQYTLMKDPVIL-PSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIP-NTELKAKIEEFIKSQ 1021 (1049)
Q Consensus 949 ~~iPdeflcPI~~~lM~DPV~l-p~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~lip-n~~Lk~~I~~w~~~~ 1021 (1049)
+.+.+++.|||+..+++|||.. .|| |.|++.||..|+..++.||-++.+++....+| ...+++.|..|...-
T Consensus 16 ~~~~~~l~C~~C~~vl~~p~~~~~cg-h~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~c 89 (391)
T KOG0297|consen 16 RPLDENLLCPICMSVLRDPVQTTTCG-HRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLKLPIRC 89 (391)
T ss_pred CCCcccccCccccccccCCCCCCCCC-CcccccccchhhccCcCCcccccccchhhccCchHHHHHHHHhccccc
Confidence 3467779999999999999995 666 99999999999999999999999999888777 557788888776543
No 32
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=94.98 E-value=0.025 Score=42.68 Aligned_cols=38 Identities=37% Similarity=0.527 Sum_probs=33.3
Q ss_pred CCCccccccCceecCCCCeeecHHHHHHHHh-cCCCCCCC
Q 001583 957 DPIQYTLMKDPVILPSSRITVDRPVIQRHLL-SDATDPFN 995 (1049)
Q Consensus 957 cPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~-~~~~dP~t 995 (1049)
|||+.+..++|+++|+| |.|...++.+|+. ....||++
T Consensus 1 C~iC~~~~~~~~~~~C~-H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCG-HTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCC-ChHHHHHHHHHHHhCcCCCCCC
Confidence 68888889999999999 9999999999998 34578864
No 33
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=0.025 Score=61.27 Aligned_cols=55 Identities=16% Similarity=0.364 Sum_probs=48.3
Q ss_pred CCCCCCCCCccccccCce----ecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccc
Q 001583 951 IPDEFLDPIQYTLMKDPV----ILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIP 1006 (1049)
Q Consensus 951 iPdeflcPI~~~lM~DPV----~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~lip 1006 (1049)
....|+||+|.+.+.+-+ +-||| +++...|.++.+..|..||+|..||+..|+|+
T Consensus 218 ~s~ryiCpvtrd~LtNt~~ca~Lr~sg-~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 218 ASKRYICPVTRDTLTNTTPCAVLRPSG-HVVTKECVEKLIRKDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred hccceecccchhhhcCccceEEeccCC-cEeeHHHHHHhccccccccCCCCcCcccceEe
Confidence 336899999999887754 45666 99999999999999999999999999999985
No 34
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=94.41 E-value=0.045 Score=49.40 Aligned_cols=39 Identities=26% Similarity=0.260 Sum_probs=32.0
Q ss_pred CCCccccccCc-------------eecCCCCeeecHHHHHHHHhcCCCCCCCC
Q 001583 957 DPIQYTLMKDP-------------VILPSSRITVDRPVIQRHLLSDATDPFNR 996 (1049)
Q Consensus 957 cPI~~~lM~DP-------------V~lp~g~~t~dR~~I~~~L~~~~~dP~tr 996 (1049)
|+|+.+-+.|| ++.++| |.|-..+|.+||....+||++|
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCG-HIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTS-EEEEHHHHHHHHTTSSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccC-CCEEHHHHHHHHhcCCcCCCCC
Confidence 99999888444 344676 9999999999999999999997
No 35
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.025 Score=62.03 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=46.6
Q ss_pred CC-CCCCCCCccccccCceecCCCCeeecHHHHHH-HHhcC-CCCCCCCCCCCCCCc
Q 001583 951 IP-DEFLDPIQYTLMKDPVILPSSRITVDRPVIQR-HLLSD-ATDPFNRSHLTADML 1004 (1049)
Q Consensus 951 iP-deflcPI~~~lM~DPV~lp~g~~t~dR~~I~~-~L~~~-~~dP~tr~pL~~~~l 1004 (1049)
+| .+|.|+||.+.|.+|+.+||| |+||=.||.. |-... ..||.||+...+.++
T Consensus 211 ip~~d~kC~lC~e~~~~ps~t~Cg-HlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 211 IPLADYKCFLCLEEPEVPSCTPCG-HLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccccceeeeecccCCccccccc-chhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 55 469999999999999999999 9999999999 87765 479999998877665
No 36
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=93.85 E-value=0.031 Score=63.01 Aligned_cols=66 Identities=11% Similarity=0.048 Sum_probs=53.9
Q ss_pred cCCCCCCCCCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCC----CccccHHHHHH
Q 001583 948 LGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTAD----MLIPNTELKAK 1013 (1049)
Q Consensus 948 ~~~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~----~lipn~~Lk~~ 1013 (1049)
+.++-+...|+||...|.|+-++..+-|||||+||.+||....+||.|+..+-.. .+.++..|...
T Consensus 9 ~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~Drtlqdi 78 (331)
T KOG2660|consen 9 LTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDI 78 (331)
T ss_pred hhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHH
Confidence 4567778899999999999998887889999999999999999999999766533 45555555443
No 37
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.84 E-value=0.091 Score=58.49 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=49.1
Q ss_pred CCCCCCCCCccccccC---cee-cCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCcc----ccHHHHHHHHHH
Q 001583 951 IPDEFLDPIQYTLMKD---PVI-LPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLI----PNTELKAKIEEF 1017 (1049)
Q Consensus 951 iPdeflcPI~~~lM~D---PV~-lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~li----pn~~Lk~~I~~w 1017 (1049)
-...|+|||+...|.. =|. -||| |+|...+|.+-= .+..||.|++|.+.+|+| ++.++...-+.+
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG-~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp~~ee~~~l~~~~ 182 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCG-CVFSEKALKELK-KSKKCPVCGKPFTEEDIIPLNPPEEELEKLRERM 182 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCC-CEeeHHHHHhhc-ccccccccCCccccCCEEEecCCccHHHHHHHHH
Confidence 5667999999999953 344 4777 999999999982 366899999999999988 333444444444
No 38
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.044 Score=64.27 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCC----CCcc-ccHHHHHHHHHHHHHc
Q 001583 949 GDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTA----DMLI-PNTELKAKIEEFIKSQ 1021 (1049)
Q Consensus 949 ~~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~----~~li-pn~~Lk~~I~~w~~~~ 1021 (1049)
.+++.+|.|-+|..++-+||.+||| |++++.||.+-+.....||.||.++.. +... +|..+++.|..|+..-
T Consensus 79 ~~~~sef~c~vc~~~l~~pv~tpcg-hs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~ 155 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYPPVVTPCG-HSFCLECLDRSLDQETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGS 155 (398)
T ss_pred ccccchhhhhhhHhhcCCCcccccc-ccccHHHHHHHhccCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4579999999999999999999999 999999999977767899999988862 2222 4788888888887653
No 39
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.027 Score=68.85 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=43.4
Q ss_pred CCCCCCCCCccccccC-----ceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCC
Q 001583 951 IPDEFLDPIQYTLMKD-----PVILPSSRITVDRPVIQRHLLSDATDPFNRSHLT 1000 (1049)
Q Consensus 951 iPdeflcPI~~~lM~D-----PV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~ 1000 (1049)
...+=.|+||.+.|.. |=.+||| |++..+|+.+|+...++||+||..+-
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~-Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCG-HIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecc-cchHHHHHHHHHHHhCcCCcchhhhh
Confidence 3345589999999999 7899999 99999999999999999999999443
No 40
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.069 Score=63.38 Aligned_cols=71 Identities=20% Similarity=0.173 Sum_probs=55.9
Q ss_pred CCCCCCCCCccccccCceecCCCCeeecHHHHHHHHhcC-----CCCCCCCCCCCCCCccccH----HHHHHHHHHHHHc
Q 001583 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD-----ATDPFNRSHLTADMLIPNT----ELKAKIEEFIKSQ 1021 (1049)
Q Consensus 951 iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~-----~~dP~tr~pL~~~~lipn~----~Lk~~I~~w~~~~ 1021 (1049)
++.+.-||||..--.=||++-|| |+||=.||.+++... ..||.||..++..||.|-. .-|+.++.+.+.+
T Consensus 183 ~~t~~~CPICL~~~~~p~~t~CG-HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~n 261 (513)
T KOG2164|consen 183 GSTDMQCPICLEPPSVPVRTNCG-HIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPN 261 (513)
T ss_pred cCcCCcCCcccCCCCcccccccC-ceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhccc
Confidence 34478899999999999999988 999999999955542 4999999999998887644 3445566666655
Q ss_pred C
Q 001583 1022 G 1022 (1049)
Q Consensus 1022 ~ 1022 (1049)
+
T Consensus 262 g 262 (513)
T KOG2164|consen 262 G 262 (513)
T ss_pred C
Confidence 4
No 41
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=92.99 E-value=0.098 Score=57.41 Aligned_cols=66 Identities=24% Similarity=0.239 Sum_probs=53.5
Q ss_pred CCCCCCCccccccCceecCCCCeeecHHHHHHHHhcC--CCCCCCCCC----CCCCCccccHHHHHHHHHHH
Q 001583 953 DEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD--ATDPFNRSH----LTADMLIPNTELKAKIEEFI 1018 (1049)
Q Consensus 953 deflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~--~~dP~tr~p----L~~~~lipn~~Lk~~I~~w~ 1018 (1049)
=++.|||+......||+..-+||+|||..|...+... -.||.-+-+ +...-+.+..+|+.+|..-.
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~~q 246 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQSQ 246 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHHhc
Confidence 3578999999999999998777999999999998873 489986654 33556778888888887643
No 42
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=0.073 Score=60.95 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=49.6
Q ss_pred CCCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccH
Q 001583 955 FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNT 1008 (1049)
Q Consensus 955 flcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~lipn~ 1008 (1049)
..|.|+...++|||-+++| .+||-.+|.-||...++.|.|+++|...+||+-.
T Consensus 41 ~hC~lt~~Pfe~PvC~~dg-~vFd~~~Ivp~lkk~g~nP~tG~kl~~~dLIkL~ 93 (518)
T KOG0883|consen 41 NHCSLTMLPFEDPVCTVDG-TVFDLTAIVPWLKKHGTNPITGQKLDGKDLIKLK 93 (518)
T ss_pred hhceeccccccCcccccCC-cEEeeehhhHHHHHcCCCCCCCCccccccceeee
Confidence 3799999999999999999 8999999999999999999999999999999643
No 43
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=92.31 E-value=0.11 Score=42.21 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=32.8
Q ss_pred CCCccccc---cCceecCCCCeeecHHHHHHHHhcCCCCCCCCC
Q 001583 957 DPIQYTLM---KDPVILPSSRITVDRPVIQRHLLSDATDPFNRS 997 (1049)
Q Consensus 957 cPI~~~lM---~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~ 997 (1049)
||+++.-+ +-|+++++| |+|+.++|.++......||++|+
T Consensus 2 C~~C~~~~~~~~~~~l~~Cg-H~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCG-HIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccC-CHHHHHHHHhhcCCCCCCcCCCC
Confidence 67777766 457889988 99999999999844569999985
No 44
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=92.21 E-value=0.073 Score=51.43 Aligned_cols=56 Identities=20% Similarity=0.368 Sum_probs=36.6
Q ss_pred CCCCCCCCCccccccCceecCCCC-----eeecHHHHHHHHhcCCCCCCCCCCCCCCCccc
Q 001583 951 IPDEFLDPIQYTLMKDPVILPSSR-----ITVDRPVIQRHLLSDATDPFNRSHLTADMLIP 1006 (1049)
Q Consensus 951 iPdeflcPI~~~lM~DPV~lp~g~-----~t~dR~~I~~~L~~~~~dP~tr~pL~~~~lip 1006 (1049)
..+.+.||||-++-+.=|.+..+. .-||..++.+.+..+...|++|+|++.+|++.
T Consensus 37 ~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~~HPLSREpit~sMIv~ 97 (113)
T PF06416_consen 37 PEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGAPHPLSREPITPSMIVS 97 (113)
T ss_dssp -CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT---TTT-----TTTEE-
T ss_pred CHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCCCCCCccCCCChhhEec
Confidence 444568999999999999886553 34999999999999999999999999999874
No 45
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.56 E-value=0.091 Score=65.03 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=49.1
Q ss_pred CCCCCCCCCCccccccCceecCCCCeeecHHHHHHHHhc-CCCCCCCCCCCCCCCccc
Q 001583 950 DIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS-DATDPFNRSHLTADMLIP 1006 (1049)
Q Consensus 950 ~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~-~~~dP~tr~pL~~~~lip 1006 (1049)
+.-.-+.||.|.+=.+|-||+.|| |.||-.||..-+.. ..+||-|+.+....|+.|
T Consensus 639 ~yK~~LkCs~Cn~R~Kd~vI~kC~-H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKDAVITKCG-HVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHHhceeCCCccCchhhHHHHhcc-hHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 344457899999999999999999 99999999997665 679999999999988876
No 46
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.82 E-value=0.042 Score=62.45 Aligned_cols=69 Identities=20% Similarity=0.156 Sum_probs=54.2
Q ss_pred hhcCCCCCCCCCCCccccccCceecCCCCeeecHHHHHHHHhcC-CCCCCCCCCCC-CCCccccHHHHHHH
Q 001583 946 AALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLT-ADMLIPNTELKAKI 1014 (1049)
Q Consensus 946 ~~~~~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~-~~dP~tr~pL~-~~~lipn~~Lk~~I 1014 (1049)
.++..+--+|.||||.+|.+--...+-|.|-||+.||..-+.+. .+||.||+.|. --.|.+++..-+.|
T Consensus 35 ~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLi 105 (381)
T KOG0311|consen 35 VDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALI 105 (381)
T ss_pred ecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHH
Confidence 44455667899999999999999999777999999999988885 59999999875 45566555443333
No 47
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=90.82 E-value=0.12 Score=58.33 Aligned_cols=55 Identities=22% Similarity=0.263 Sum_probs=48.0
Q ss_pred CCCCCCCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCcc
Q 001583 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLI 1005 (1049)
Q Consensus 951 iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~li 1005 (1049)
.|+.=.||+|-.--.+|-++..||.++|-.||-+|+.+.++||+|+-|...++++
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~ 351 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLI 351 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHH
Confidence 4556689999988888888887669999999999999999999999999877764
No 48
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.57 E-value=0.16 Score=55.21 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=33.3
Q ss_pred CCCCCCCCCccccccCceecCCCCeeecHHHHHHHHhcC
Q 001583 951 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD 989 (1049)
Q Consensus 951 iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~ 989 (1049)
|-+-=+|.||-....|||+.|.| ++|||.+|.++++..
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~G-ylfdrEaILe~ilaq 77 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDG-YLFDREAILEYILAQ 77 (303)
T ss_pred cCCcceeeeecccccCCccCCCC-eeeeHHHHHHHHHHH
Confidence 44444999999999999999999 999999999988753
No 49
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.59 E-value=0.66 Score=52.01 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=34.7
Q ss_pred CCCCccccc--cCc-eecCCCCeeecHHHHHHHHhcC-CCCCCCCCCCCC
Q 001583 956 LDPIQYTLM--KDP-VILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTA 1001 (1049)
Q Consensus 956 lcPI~~~lM--~DP-V~lp~g~~t~dR~~I~~~L~~~-~~dP~tr~pL~~ 1001 (1049)
-|.||..=+ .|- ++|||. |.|-++||.+|+... ..||.||.++..
T Consensus 325 eCaICms~fiK~d~~~vlPC~-H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 325 ECAICMSNFIKNDRLRVLPCD-HRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred eEEEEhhhhcccceEEEeccC-ceechhHHHHHHhhhcccCCccCCCCCC
Confidence 477765322 233 478988 999999999999964 599999999863
No 50
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=84.30 E-value=0.51 Score=54.78 Aligned_cols=37 Identities=22% Similarity=0.430 Sum_probs=33.1
Q ss_pred CCCCCCCCccccccCceecCCCCeeecHHHHHHHHhcC
Q 001583 952 PDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD 989 (1049)
Q Consensus 952 PdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~ 989 (1049)
.||+.||||...++||+||||| |..||.|-..-+-+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~-h~lc~~ca~~~~~~t 38 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCS-HNLCQACARNILVQT 38 (699)
T ss_pred cccccCceehhhccCceEeecc-cHHHHHHHHhhcccC
Confidence 3689999999999999999999 999999998776654
No 51
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.04 E-value=0.64 Score=52.22 Aligned_cols=46 Identities=20% Similarity=0.011 Sum_probs=41.0
Q ss_pred CCCCccccccCceecCCCCeeecHHHHHHHHhcC-CCCCCCCCCCCCC
Q 001583 956 LDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTAD 1002 (1049)
Q Consensus 956 lcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~-~~dP~tr~pL~~~ 1002 (1049)
.|+||+.-|.-||.++|+ |.|+--||+.-..++ .+||+||.|++.+
T Consensus 9 eC~IC~nt~n~Pv~l~C~-HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCF-HKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCcccccc-chhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 399999999999999999 999999999966665 5899999999854
No 52
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.01 E-value=1.5 Score=48.21 Aligned_cols=126 Identities=16% Similarity=0.112 Sum_probs=78.2
Q ss_pred chhhhhhcc--CCcCcHHHHHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHHHHHHHhHhhhc----CC-CCCCCCCCCc
Q 001583 890 LFPAAISSD--GRSYNEQLFSAAADVLWKIGE--DGRIIQEFIELGAKAKAAASEAMDAEAAL----GD-IPDEFLDPIQ 960 (1049)
Q Consensus 890 ~F~~aVa~D--gRsy~~elF~~a~~il~~~~l--~~~~i~~~~~l~~~~~~~~~~~~~~e~~~----~~-iPdeflcPI~ 960 (1049)
...+-|+.+ ||-|+.+-.- ..+|.+..+ +...|..+..+++---.. ...-+.|- .| --..|+|||+
T Consensus 43 pL~~Piv~c~lGrLYNKe~vi--~~LL~Ks~~pksaShIKslKDvveLklt~---n~~~~gD~~~~~~D~~~a~fiCPvt 117 (293)
T KOG3113|consen 43 PLRRPIVACGLGRLYNKESVI--EFLLDKSSLPKSASHIKSLKDVVELKLTL---NPAFEGDKGNKHDDTQRARFICPVT 117 (293)
T ss_pred ccccceeeehhhccccHHHHH--HHHHhcccCCcchhhhcchhhHhheeccc---CcccccccCccccccccceeecccc
Confidence 355556555 5778877522 224666555 666666665554311100 00011111 11 1346999999
Q ss_pred cccccCc----eecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccc---cH----HHHHHHHHHHHHcCC
Q 001583 961 YTLMKDP----VILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIP---NT----ELKAKIEEFIKSQGL 1023 (1049)
Q Consensus 961 ~~lM~DP----V~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~lip---n~----~Lk~~I~~w~~~~~~ 1023 (1049)
+-.|.+- ++-+|| |+|.-+++.+. ....|+.|+++...+|+|+ +. -||.+.++-....+.
T Consensus 118 gleMng~~~F~~l~~CG-cV~SerAlKei--kas~C~~C~a~y~~~dvIvlNg~~E~~dllk~rme~~kak~k~ 188 (293)
T KOG3113|consen 118 GLEMNGKYRFCALRCCG-CVFSERALKEI--KASVCHVCGAAYQEDDVIVLNGTEEDVDLLKTRMEERKAKAKL 188 (293)
T ss_pred cceecceEEEEEEeccc-eeccHHHHHHh--hhccccccCCcccccCeEeeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999875 355666 99999999887 3569999999999999873 32 466666666555443
No 53
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.34 E-value=0.99 Score=52.53 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=36.5
Q ss_pred CCCCCccccccC---ceecCCCCeeecHHHHHHHHhcCC---CCCCCCCCC
Q 001583 955 FLDPIQYTLMKD---PVILPSSRITVDRPVIQRHLLSDA---TDPFNRSHL 999 (1049)
Q Consensus 955 flcPI~~~lM~D---PV~lp~g~~t~dR~~I~~~L~~~~---~dP~tr~pL 999 (1049)
|.|||..+-=.| |+.|+|| |++.|.+|.+--.++. .||+|-..-
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CG-HVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICG-HVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eecccchhhccCCCCCeeeecc-ceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 799999876654 8899999 9999999999877753 899986543
No 54
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=82.31 E-value=0.73 Score=54.82 Aligned_cols=56 Identities=20% Similarity=0.102 Sum_probs=48.0
Q ss_pred CCCCCCCccccccCceecCCCCeeecHHHHHHHHhc-----CCCCCCCCCCCCCCCccccHH
Q 001583 953 DEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS-----DATDPFNRSHLTADMLIPNTE 1009 (1049)
Q Consensus 953 deflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~-----~~~dP~tr~pL~~~~lipn~~ 1009 (1049)
.+-.|-||.+.-+||+...|- |+|||-||..+..+ +-+||.|-.+|+++.-.|..+
T Consensus 535 ~~~~C~lc~d~aed~i~s~Ch-H~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ale 595 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCH-HKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALE 595 (791)
T ss_pred CceeecccCChhhhhHhhhhh-HHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhh
Confidence 357899999999999999988 99999999888775 249999999999987666543
No 55
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=82.15 E-value=1.3 Score=37.32 Aligned_cols=44 Identities=11% Similarity=0.112 Sum_probs=29.0
Q ss_pred CCCCCccccccCceecCCCCee--ecHHHHHHHHhcCC--CCCCCCCC
Q 001583 955 FLDPIQYTLMKDPVILPSSRIT--VDRPVIQRHLLSDA--TDPFNRSH 998 (1049)
Q Consensus 955 flcPI~~~lM~DPV~lp~g~~t--~dR~~I~~~L~~~~--~dP~tr~p 998 (1049)
+.|||+++.|+-||.--.++|. ||-.+....-.+.+ .||++++|
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 6799999999999998877777 89877777655544 79999876
No 56
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=76.60 E-value=2.4 Score=39.67 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=33.1
Q ss_pred CCCccccccC-ceecCCCCeeecHHHHHHHHhc---CCCCCCCCCCCCC
Q 001583 957 DPIQYTLMKD-PVILPSSRITVDRPVIQRHLLS---DATDPFNRSHLTA 1001 (1049)
Q Consensus 957 cPI~~~lM~D-PV~lp~g~~t~dR~~I~~~L~~---~~~dP~tr~pL~~ 1001 (1049)
||.+.--=.| |+++-.++|.|-..+|.+||.+ .++||++|++...
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 4444333334 7766656699999999999996 3699999998654
No 57
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=72.14 E-value=1.4 Score=50.90 Aligned_cols=49 Identities=27% Similarity=0.228 Sum_probs=41.8
Q ss_pred CCCCC-CCCCccccccCceecCCCCeeecHHHHHHHHhcC--CCCCCCCCCCC
Q 001583 951 IPDEF-LDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD--ATDPFNRSHLT 1000 (1049)
Q Consensus 951 iPdef-lcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~--~~dP~tr~pL~ 1000 (1049)
...-| +|-||.+==+|=-|-||| |.+|-+|+..|-.++ ++|||||-.+.
T Consensus 365 MgsTFeLCKICaendKdvkIEPCG-HLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 365 MGSTFELCKICAENDKDVKIEPCG-HLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred ccchHHHHHHhhccCCCccccccc-chHHHHHHHhhcccCCCCCCCceeeEec
Confidence 33345 899999999998899999 999999999998776 59999996655
No 58
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.53 E-value=1.7 Score=48.83 Aligned_cols=59 Identities=10% Similarity=-0.017 Sum_probs=47.5
Q ss_pred CCCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHH
Q 001583 955 FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIE 1015 (1049)
Q Consensus 955 flcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~lipn~~Lk~~I~ 1015 (1049)
|-|-||..-+.+||+..|| |+||..|-.+++.....|+.|.+..-- -.-+..+|.....
T Consensus 242 f~c~icr~~f~~pVvt~c~-h~fc~~ca~~~~qk~~~c~vC~~~t~g-~~~~akeL~~~L~ 300 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCG-HYFCEVCALKPYQKGEKCYVCSQQTHG-SFNVAKELLVSLK 300 (313)
T ss_pred ccccccccccccchhhcCC-ceeehhhhccccccCCcceeccccccc-ccchHHHHHHHHH
Confidence 5699999999999999999 999999999999999999999987542 2234444444433
No 59
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.10 E-value=3.3 Score=47.99 Aligned_cols=44 Identities=18% Similarity=0.099 Sum_probs=38.0
Q ss_pred CCCCCccccccC--c-eecCCCCeeecHHHHHHHHhcCC-CCCCCCCCC
Q 001583 955 FLDPIQYTLMKD--P-VILPSSRITVDRPVIQRHLLSDA-TDPFNRSHL 999 (1049)
Q Consensus 955 flcPI~~~lM~D--P-V~lp~g~~t~dR~~I~~~L~~~~-~dP~tr~pL 999 (1049)
+.|.||.+-+++ = ++|||+ |.|-..||..||...+ .||.|++..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-H~FH~~CIDpWL~~~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-HKFHVNCIDPWLTQTRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-CchhhccchhhHhhcCccCCCCCCcC
Confidence 689999988854 3 489999 9999999999999986 599999754
No 60
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.75 E-value=3.8 Score=47.59 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=40.8
Q ss_pred CCCCCCCCccccccCce-------ecCCCCeeecHHHHHHHH--hc-----CCCCCCCCCCCC
Q 001583 952 PDEFLDPIQYTLMKDPV-------ILPSSRITVDRPVIQRHL--LS-----DATDPFNRSHLT 1000 (1049)
Q Consensus 952 PdeflcPI~~~lM~DPV-------~lp~g~~t~dR~~I~~~L--~~-----~~~dP~tr~pL~ 1000 (1049)
-.+..|-||.+.-.+++ |||.++|+++-.||..|= .. ...|||||.+.+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45788999998888888 678777999999999997 33 368999998765
No 61
>PF04641 Rtf2: Rtf2 RING-finger
Probab=65.27 E-value=7.8 Score=43.34 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=32.6
Q ss_pred CCCCCCccccccCceecCCCCeeecHHHHHHHHhcCCC
Q 001583 954 EFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDAT 991 (1049)
Q Consensus 954 eflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~ 991 (1049)
...|+|+.+.+++||+.-.-|+.|++.+|..||+....
T Consensus 34 w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~~ 71 (260)
T PF04641_consen 34 WTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKKK 71 (260)
T ss_pred cCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcCc
Confidence 56899999999999976544499999999999998643
No 62
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=63.90 E-value=4.9 Score=45.54 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=37.1
Q ss_pred CCCCCccccccC---ceecCCCCeeecHHHHHHHHhcC---CCCCCCCCCCCC
Q 001583 955 FLDPIQYTLMKD---PVILPSSRITVDRPVIQRHLLSD---ATDPFNRSHLTA 1001 (1049)
Q Consensus 955 flcPI~~~lM~D---PV~lp~g~~t~dR~~I~~~L~~~---~~dP~tr~pL~~ 1001 (1049)
|+||...+.-.| ||++.|| |++-+.++.+.=.++ -.||+|-.--..
T Consensus 337 FiCPVlKe~~t~ENpP~ml~Cg-HVIskeal~~LS~nG~~~FKCPYCP~~~~~ 388 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECG-HVISKEALSVLSQNGVLSFKCPYCPEMSKY 388 (396)
T ss_pred eeccccHhhhcccCCCeeeecc-ceeeHHHHHHHhhcCcEEeeCCCCCcchhh
Confidence 899999987765 8999999 999999998876665 389998654433
No 63
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=59.57 E-value=4.5 Score=51.50 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=36.1
Q ss_pred CCCcccccc-----Cce-ecCCCCeeecHHHHHHHHhcC--CCCCCCCCCCC
Q 001583 957 DPIQYTLMK-----DPV-ILPSSRITVDRPVIQRHLLSD--ATDPFNRSHLT 1000 (1049)
Q Consensus 957 cPI~~~lM~-----DPV-~lp~g~~t~dR~~I~~~L~~~--~~dP~tr~pL~ 1000 (1049)
||||+.+.. =|- ..|+|++-|--+|+-+|+.+. .+||.||...|
T Consensus 1472 CaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1472 CAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 999999875 233 456778889999999999995 59999997665
No 64
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=56.52 E-value=5.7 Score=42.33 Aligned_cols=44 Identities=14% Similarity=0.011 Sum_probs=40.0
Q ss_pred CCCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCC
Q 001583 955 FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHL 999 (1049)
Q Consensus 955 flcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL 999 (1049)
|+|-||..=++.||+..|| |.||-.|..+-.....+|-.|+...
T Consensus 197 F~C~iCKkdy~spvvt~CG-H~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVTECG-HSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhhhcc-hhHHHHHHHHHhccCCcceecchhh
Confidence 9999999999999999999 9999999888777788999988754
No 65
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=53.25 E-value=12 Score=40.97 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=54.6
Q ss_pred CCCCCCccccccCceecCCCCeeecHHHHHHHHhc--CCCCCC--CCCCCCCCCccccH--HHHHHHHHHHHHcCC
Q 001583 954 EFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS--DATDPF--NRSHLTADMLIPNT--ELKAKIEEFIKSQGL 1023 (1049)
Q Consensus 954 eflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~--~~~dP~--tr~pL~~~~lipn~--~Lk~~I~~w~~~~~~ 1023 (1049)
+..|||+..-..-|.+...++|.|||..|...|.- ...||. |-+.+..+.++-++ ++|.+|...+..+..
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~ir~sqeq 264 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKREAMKYIRNSQEQ 264 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHHHHHHHHHhhhhh
Confidence 34799999999999998777799999999999984 458885 67788888888665 556666666555543
No 66
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.27 E-value=7.9 Score=46.32 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=28.9
Q ss_pred ceecCCCCeeecHHHHHHHHhcC-CCCCCCCCCCCC
Q 001583 967 PVILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTA 1001 (1049)
Q Consensus 967 PV~lp~g~~t~dR~~I~~~L~~~-~~dP~tr~pL~~ 1001 (1049)
=.++||- |+|-|+|+++|...- -.||.||.||..
T Consensus 601 Ym~tPC~-HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 601 YMLTPCH-HIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccchH-HHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3467888 999999999999964 499999999863
No 67
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=51.67 E-value=10 Score=38.43 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=36.1
Q ss_pred CCCCCCccccccC--ce-ecCCCC-----eeecHHHHHHHHhcCCCCCCCCCCCC
Q 001583 954 EFLDPIQYTLMKD--PV-ILPSSR-----ITVDRPVIQRHLLSDATDPFNRSHLT 1000 (1049)
Q Consensus 954 eflcPI~~~lM~D--PV-~lp~g~-----~t~dR~~I~~~L~~~~~dP~tr~pL~ 1000 (1049)
..-|.||.+-..+ =| .+++|| +.|+.+|+++|-....+|||+|...-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR~I~y 80 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNRNIKY 80 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCcccceEE
Confidence 3459999977766 55 467774 34889999999777789999997643
No 68
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=49.89 E-value=9.3 Score=48.32 Aligned_cols=121 Identities=14% Similarity=0.079 Sum_probs=73.6
Q ss_pred HHHHHHHHHhccCCCCcchhhhhhccCCcCcHHHHHHHHHHHHhhcC-ChHHHHHH-----HHHHHHHH-HHHHHHHhHh
Q 001583 873 KQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGE-DGRIIQEF-----IELGAKAK-AAASEAMDAE 945 (1049)
Q Consensus 873 ~~i~~iYlnL~~~~~~~~F~~aVa~DgRsy~~elF~~a~~il~~~~l-~~~~i~~~-----~~l~~~~~-~~~~~~~~~e 945 (1049)
....+.|-++-... ...|-..+..+-..++...+-...-+++..-- +...+... ...+..+. .+...
T Consensus 377 ~~e~~~y~~l~~~~-~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~----- 450 (674)
T KOG1001|consen 377 KSERSAYKALKANS-RNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVD----- 450 (674)
T ss_pred HhHHHHHHHHhhhh-hhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHH-----
Confidence 44556677766432 23576677777777777777776655554432 22222221 11111111 11110
Q ss_pred hhcCCCCCCCCCCCccccccCceecCCCCeeecHHHHHHHHhcC--CCCCCCCCCCCCCCccc
Q 001583 946 AALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD--ATDPFNRSHLTADMLIP 1006 (1049)
Q Consensus 946 ~~~~~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~--~~dP~tr~pL~~~~lip 1006 (1049)
.. .+ +.|+||.+ -.+||+.+|| |.+|++|+..-+... ..||.||..+....+..
T Consensus 451 l~-~~----~~c~ic~~-~~~~~it~c~-h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 451 LS-VS----HWCHICCD-LDSFFITRCG-HDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred Hh-hc----cccccccc-cccceeeccc-chHHHHHHHhccccccCCCCcHHHHHHHHHHHhh
Confidence 10 11 88999999 9999999999 999999999966653 47999998777555543
No 69
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=48.68 E-value=10 Score=32.81 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=31.1
Q ss_pred ccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCC
Q 001583 960 QYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADM 1003 (1049)
Q Consensus 960 ~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~ 1003 (1049)
+...=...+++||| |.+++.|.--+ +-.-||||+.|+..++
T Consensus 13 ~~~~~~~~~~~pCg-H~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 13 CGFVGTKGTVLPCG-HLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred cccccccccccccc-ceeeccccChh--hccCCCCCCCcccCCC
Confidence 33444678899999 99999886543 3468999999987665
No 70
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.13 E-value=8.5 Score=44.74 Aligned_cols=49 Identities=20% Similarity=0.309 Sum_probs=40.9
Q ss_pred CCCCCccccccC---ceecCCCCeeecHHHHHHHHhcCC-CCCCCCCCCCCCCc
Q 001583 955 FLDPIQYTLMKD---PVILPSSRITVDRPVIQRHLLSDA-TDPFNRSHLTADML 1004 (1049)
Q Consensus 955 flcPI~~~lM~D---PV~lp~g~~t~dR~~I~~~L~~~~-~dP~tr~pL~~~~l 1004 (1049)
++|-|++++|.| |++.|.| ++|--.+|++|=..++ .||.+...+...++
T Consensus 331 Lvc~isge~md~~N~P~lfpnG-~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~l 383 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNG-YVYGTKALESLNEDDGIGDPRTKKVFRYSEL 383 (389)
T ss_pred HHhhccccccCCCCCcccccCc-eeehhHHHHhhcccCCCcCCCCCccccHHHH
Confidence 468899999865 9999999 9999999999977774 99999887765443
No 71
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.40 E-value=5.5 Score=44.35 Aligned_cols=54 Identities=9% Similarity=0.219 Sum_probs=40.1
Q ss_pred cCceecCCCCeeecHHHHHHHHhc--CCCCCCCCCCCCCCCccccH-----HHHHHHHHHHH
Q 001583 965 KDPVILPSSRITVDRPVIQRHLLS--DATDPFNRSHLTADMLIPNT-----ELKAKIEEFIK 1019 (1049)
Q Consensus 965 ~DPV~lp~g~~t~dR~~I~~~L~~--~~~dP~tr~pL~~~~lipn~-----~Lk~~I~~w~~ 1019 (1049)
++--.|.|+ |+|---||+.|-.- .++||+|.+......+..|+ -+--++-.|++
T Consensus 245 enty~LsCn-HvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsnpWekph~~yg~LldwlR 305 (328)
T KOG1734|consen 245 ENTYKLSCN-HVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWEKPHVWYGQLLDWLR 305 (328)
T ss_pred hhheeeecc-cchHHHhhhhheeecCCCCCchHHHHhhHhhhccCccccchhHHHHHHHHHH
Confidence 344467888 99999999999553 57999999998887777664 34455555554
No 72
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=42.24 E-value=4.4 Score=36.43 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=24.9
Q ss_pred CCCCCCcccccc-C---ceec---CCCCeeecHHHHHHHHhcC-----------CCCCCCCCCCCCC
Q 001583 954 EFLDPIQYTLMK-D---PVIL---PSSRITVDRPVIQRHLLSD-----------ATDPFNRSHLTAD 1002 (1049)
Q Consensus 954 eflcPI~~~lM~-D---PV~l---p~g~~t~dR~~I~~~L~~~-----------~~dP~tr~pL~~~ 1002 (1049)
+.-|+|++.... + |++. +.++.+|=..++.+||++. ++||+++++++..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 345999997654 2 5543 2456899999999999962 4699999998753
No 73
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=39.67 E-value=20 Score=33.33 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=28.8
Q ss_pred ceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCC
Q 001583 967 PVILPSSRITVDRPVIQRHLLSDATDPFNRSHLT 1000 (1049)
Q Consensus 967 PV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~ 1000 (1049)
||.--.++|.|---+|.+||.+.+.||..|++-.
T Consensus 48 ~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 48 PVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred eEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 5555556799999999999999999999998754
No 74
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.19 E-value=31 Score=38.96 Aligned_cols=52 Identities=23% Similarity=0.255 Sum_probs=42.5
Q ss_pred cCceecCCCCeeecHHHHHHHHhcC-CCCCCCCCC--CC---CCCccccHHHHHHHHHH
Q 001583 965 KDPVILPSSRITVDRPVIQRHLLSD-ATDPFNRSH--LT---ADMLIPNTELKAKIEEF 1017 (1049)
Q Consensus 965 ~DPV~lp~g~~t~dR~~I~~~L~~~-~~dP~tr~p--L~---~~~lipn~~Lk~~I~~w 1017 (1049)
.-|-+|.|| |+++..++...+.+. ..|||+|.+ +. ...+..|.++-+.|+..
T Consensus 20 ~~p~~l~c~-h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 20 HIPRVLKCG-HTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred cCCcccccC-ceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 346666788 999999999988876 488999999 33 56788999999999886
No 75
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.14 E-value=34 Score=38.59 Aligned_cols=46 Identities=15% Similarity=0.025 Sum_probs=38.4
Q ss_pred CCCCCCccccccCceec-CCCCeeecHHHHHHHHhcC--CCCCCCCCCCC
Q 001583 954 EFLDPIQYTLMKDPVIL-PSSRITVDRPVIQRHLLSD--ATDPFNRSHLT 1000 (1049)
Q Consensus 954 eflcPI~~~lM~DPV~l-p~g~~t~dR~~I~~~L~~~--~~dP~tr~pL~ 1000 (1049)
.-.||+|+.--.-|-+. ||| |+||--||..-++.+ -+||-|+++..
T Consensus 239 ~~~C~~Cg~~PtiP~~~~~C~-HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 239 DTECPVCGEPPTIPHVIGKCG-HIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CceeeccCCCCCCCeeecccc-ceeehhhhhhhhcchhhcccCccCCCCc
Confidence 45799999988888755 566 999999999987776 49999998754
No 76
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=32.19 E-value=6.2e+02 Score=26.63 Aligned_cols=139 Identities=17% Similarity=0.310 Sum_probs=71.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccccchhHHHHhHHHHHHHHhhccccccccchhHHHHHHHHH
Q 001583 557 LRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMF 636 (1049)
Q Consensus 557 L~dp~l~~~~l~F~~~~~~wL~~l~~~~~lPLp~~~p~~f~~lPE~~iEdi~d~~~f~~r~p~~l~~~~~~~l~~f~i~f 636 (1049)
..|++++ +++.|+...- ..++. ..+-.+||+ .+++.|+... +.....++..+--+
T Consensus 29 ~~D~efq-~~~~yl~s~~--f~~l~------------~~l~~~pE~-----~~l~~yL~~~-----gldv~~~i~~i~~~ 83 (179)
T PF06757_consen 29 LEDAEFQ-AAVRYLNSSE--FKQLW------------QQLEALPEV-----KALLDYLESA-----GLDVYYYINQINDL 83 (179)
T ss_pred HcCHHHH-HHHHHHcChH--HHHHH------------HHHHcCHHH-----HHHHHHHHHC-----CCCHHHHHHHHHHH
Confidence 4577755 7888876431 11111 124457777 4455555432 22334455555555
Q ss_pred hCCCCCccChhhHhhHHHHhHhhcCCCCCCcchhHHhhhhchhhHHHHHHHHHHHhhh-hcccCCCccchhhhhhhHHHH
Q 001583 637 MASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVD-IEFTGSHTQFYDKFNIRHNIA 715 (1049)
Q Consensus 637 l~s~~~ikNP~LraklvevL~~~~p~~~~~~~~~~~lf~~~~~a~~~L~~aLm~fYvd-vE~TG~~sqFYdKFn~Ry~I~ 715 (1049)
++-|.+-..++.... ...|-.|.+.++..--|. ..|...|.+ ++..+.=.+||++... -...
T Consensus 84 l~~~~~~p~~~~~~~----------~~~g~~g~~~di~~~lP~------~~l~aL~~~K~~~s~~F~~f~~~l~S-~ef~ 146 (179)
T PF06757_consen 84 LGLPPLNPTPSLSCS----------RGGGLNGFVDDILALLPR------DKLRALYEEKLATSPEFAEFVEALRS-PEFQ 146 (179)
T ss_pred HcCCcCCCCcccccc----------cCCCHHHHHHHHHHHCCH------HHHHHHHHHHHHCCHHHHHHHHHHcC-HHHH
Confidence 666666333333221 111213334444444442 223344554 2222222346666554 2457
Q ss_pred HHHHHHhCChhHHHHHHHHHHh
Q 001583 716 ELLEYLWQVPSHRNAWRQIAKE 737 (1049)
Q Consensus 716 ~Ilk~LW~~~~~r~~l~~~a~~ 737 (1049)
.+++.+|.++.+++-+.++.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~L~~~ 168 (179)
T PF06757_consen 147 QLYNALWASPEFQRLLNELREN 168 (179)
T ss_pred HHHHHHHcCHHHHHHHHHHHHc
Confidence 8899999999999988777643
No 77
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.74 E-value=32 Score=40.70 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=48.1
Q ss_pred CCCCCccccccCce-----ecCCCCeeecHHHHHHHHhcC--CCCCCCCCCCCCCCccccHHHHHHH
Q 001583 955 FLDPIQYTLMKDPV-----ILPSSRITVDRPVIQRHLLSD--ATDPFNRSHLTADMLIPNTELKAKI 1014 (1049)
Q Consensus 955 flcPI~~~lM~DPV-----~lp~g~~t~dR~~I~~~L~~~--~~dP~tr~pL~~~~lipn~~Lk~~I 1014 (1049)
-.||||.+-..-|+ .+.|| |-|--.||++||-.. ..||.|.-.-+..++.|-..||.+-
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cg-hlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCG-HLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred ccCceeeeeeeecCceEEeeeccc-ccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 47999998887775 55666 999999999999643 5999999988888888888777543
No 78
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=30.48 E-value=49 Score=27.76 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=29.0
Q ss_pred CCCccc--cccCceecCCC----CeeecHHHHHHHHhcCC--CCCCCC
Q 001583 957 DPIQYT--LMKDPVILPSS----RITVDRPVIQRHLLSDA--TDPFNR 996 (1049)
Q Consensus 957 cPI~~~--lM~DPV~lp~g----~~t~dR~~I~~~L~~~~--~dP~tr 996 (1049)
|-|+.+ --.+|++.|+. -+.+=++++.+|+...+ +||.++
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 445543 44678888863 36799999999998764 888764
No 79
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=30.34 E-value=1.8e+02 Score=33.05 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=44.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CChHHHHHHHHHHHHHHHHHHHHHHHhhhhccCH
Q 001583 487 TARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQT--PSSQLNLEITRIEKEIELSSQEKLCYEAQILRDG 560 (1049)
Q Consensus 487 T~~~lhlG~~~~~~~~~~l~r~i~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~~l~~l~~~~~~~~a~~L~dp 560 (1049)
|+|-+.--+.-+..+......+|.+++.+|.+|+..|--- ..-.++.+||..++++++|++-.-.++. -|.|.
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrs-sL~ek 143 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRS-SLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhchh
Confidence 3444444455555555556667777777777776544210 1223556788888888888776666666 56655
No 80
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=30.00 E-value=50 Score=38.11 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=36.7
Q ss_pred CCCCCCCcccccc--Cce--ecCCCCeeecHHHHHHHHhc-CCCCCCCCCCCCCCCcc
Q 001583 953 DEFLDPIQYTLMK--DPV--ILPSSRITVDRPVIQRHLLS-DATDPFNRSHLTADMLI 1005 (1049)
Q Consensus 953 deflcPI~~~lM~--DPV--~lp~g~~t~dR~~I~~~L~~-~~~dP~tr~pL~~~~li 1005 (1049)
|++ ||+|-+-|. |-- -.||| +-+||-|-...-.+ ++.||-||...+.+.+.
T Consensus 14 ed~-cplcie~mditdknf~pc~cg-y~ic~fc~~~irq~lngrcpacrr~y~denv~ 69 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCG-YQICQFCYNNIRQNLNGRCPACRRKYDDENVR 69 (480)
T ss_pred ccc-CcccccccccccCCcccCCcc-cHHHHHHHHHHHhhccCCChHhhhhcccccee
Confidence 355 999998883 332 35677 88888876543333 58999999988887765
No 81
>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.32 E-value=1e+02 Score=30.07 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHhchhhh
Q 001583 313 VMRGLYKDLGDVLLALLKN-TDTRENVLEYLAEVINRNSSRA 353 (1049)
Q Consensus 313 ~l~~~~~~L~~I~~~Llr~-~~sRe~vL~w~a~~i~~N~~R~ 353 (1049)
.|+..+...|..|+.|-++ .-+|.+...|+|..+.++....
T Consensus 58 ~lR~~R~~ah~~fd~lw~~~~~~R~~aY~wLA~~lgi~~~~c 99 (102)
T PF11672_consen 58 ELRRARKAAHRAFDPLWQSGHMSRSDAYRWLAKKLGIPVEEC 99 (102)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHcCCChHhc
Confidence 4567788899999999994 5679999999999988876543
No 82
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.13 E-value=60 Score=37.96 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=36.1
Q ss_pred CCCCCCCCCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCC
Q 001583 949 GDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLT 1000 (1049)
Q Consensus 949 ~~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~ 1000 (1049)
.+.|-.-+|-||.+=.++-|.+||| |+.+=..+.+|+- .||.||+.+.
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcG-h~ccct~cs~~l~---~CPvCR~rI~ 347 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCG-HVCCCTLCSKHLP---QCPVCRQRIR 347 (355)
T ss_pred cccCCCCceEEecCCccceeeecCC-cEEEchHHHhhCC---CCchhHHHHH
Confidence 3455556799999999999999999 9988333344644 5999998653
No 83
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=25.05 E-value=2.5e+02 Score=29.84 Aligned_cols=57 Identities=21% Similarity=0.068 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCC-ccccHHHHHHHHHHHHHc
Q 001583 949 GDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADM-LIPNTELKAKIEEFIKSQ 1021 (1049)
Q Consensus 949 ~~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~-lipn~~Lk~~I~~w~~~~ 1021 (1049)
..-+..|.||-|+ .+.|++-+ +..+.+||.|+.+|...| -.-...|+++|+.-..+-
T Consensus 112 e~~~~~Y~Cp~C~-----------~rytf~eA-----~~~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~ 169 (178)
T PRK06266 112 EENNMFFFCPNCH-----------IRFTFDEA-----MEYGFRCPQCGEMLEEYDNSELIKELKEQIKELEEEL 169 (178)
T ss_pred ccCCCEEECCCCC-----------cEEeHHHH-----hhcCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHh
Confidence 4456789999875 23555533 234679999999998643 334457777777665553
No 84
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=24.98 E-value=3.2e+02 Score=28.68 Aligned_cols=105 Identities=18% Similarity=0.221 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHHHHHHH
Q 001583 500 SDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVD 579 (1049)
Q Consensus 500 ~~~~~l~r~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~a~~L~dp~l~~~~l~F~~~~~~wL~~ 579 (1049)
.++.....+++++++++....++.+=.--.+++..+.++.+++|.-...+-.... + ..- --++-||.+...+..-
T Consensus 44 kk~~q~~~ei~dmKqelnavs~qD~fAkwaRlnRKi~kl~~ele~qs~n~~~q~~--~-~K~--vlSv~f~vl~~~~~~~ 118 (175)
T KOG4253|consen 44 KKESQKVAEIQDMKQELNAVSMQDNFAKWARLNRKINKLDKELETQSKNKTAQAH--L-HKW--VLSVAFYVLKIMYGKT 118 (175)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHH--HHHHHHHHHHHHHhhc
Confidence 5677788888999988876653221011334567777787777665544432222 1 111 1234455554444322
Q ss_pred HhcCCCCCCCCCCCcccccchhHHHHhHHHHHHHHhh
Q 001583 580 LVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASR 616 (1049)
Q Consensus 580 l~~~~~lPLp~~~p~~f~~lPE~~iEdi~d~~~f~~r 616 (1049)
.+ ..+. ..+-..+|-|.+.--.+...++-+
T Consensus 119 ~~----~K~s---s~pv~~~Ptf~~~~w~~~~l~~p~ 148 (175)
T KOG4253|consen 119 PV----YKLS---SSPVTLFPTFVSGVWSQGWLYVPL 148 (175)
T ss_pred ee----eeec---CCceeeecchhccchhHHHHHHHH
Confidence 22 1111 122456777777766666666644
No 85
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.97 E-value=28 Score=30.19 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=33.9
Q ss_pred CCCccccccCceecCCCCeeecHHHHHH-HHhcCCCCCCCCCCC
Q 001583 957 DPIQYTLMKDPVILPSSRITVDRPVIQR-HLLSDATDPFNRSHL 999 (1049)
Q Consensus 957 cPI~~~lM~DPV~lp~g~~t~dR~~I~~-~L~~~~~dP~tr~pL 999 (1049)
|.|+++--.|-|+--||..-++-.+=.+ |-..++.||.+|.|+
T Consensus 10 CTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 10 CTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred eeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 8899888888888899955577777666 443578999999985
No 86
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=21.82 E-value=1e+03 Score=25.76 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=68.2
Q ss_pred hHHHHhHh--hcCCCCCCcchhHHhhhhchhhHHHHHHHHHHHhhh-hcccCCCccchhhhhhhHHHHHHHHHHhCChhH
Q 001583 651 KMVEVLNC--WMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVD-IEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSH 727 (1049)
Q Consensus 651 klvevL~~--~~p~~~~~~~~~~~lf~~~~~a~~~L~~aLm~fYvd-vE~TG~~sqFYdKFn~Ry~I~~Ilk~LW~~~~~ 727 (1049)
+.+|...+ .+|++.+ +..+.+..+..++-+.-++|--|++ +|.+- ..+.-| . ...|.. +
T Consensus 13 ~~~E~mevfk~vPQ~PH----F~pL~~~~e~~REg~A~Glm~~f~~l~e~v~-~l~idd---~----~~~f~~------~ 74 (190)
T PF05266_consen 13 KTIESMEVFKKVPQSPH----FSPLQEFKEELREGMAVGLMVTFANLAEKVK-KLQIDD---S----RSSFES------L 74 (190)
T ss_pred HHHHHHHHHHcCCCCCC----ChhhhcCcHHhhhHHHHHHHHHHHHHHHHHH-HcccCC---c----HHHHHH------H
Confidence 45676654 5787543 6678888899999999999999887 45432 111111 0 011122 2
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhch
Q 001583 728 RNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSN 777 (1049)
Q Consensus 728 r~~l~~~a~~~~~~~FvrFvnlLiND~t~lLDE~L~~L~~I~~~q~e~~d 777 (1049)
.+.|..+-+ .+|=|+|+..=||-..-+-|+.-..+.+.+.++.++.+
T Consensus 75 ~~tl~~LE~---~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~ 121 (190)
T PF05266_consen 75 MKTLSELEE---HGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEE 121 (190)
T ss_pred HHHHHHHHH---cCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 233443332 37778888888888888888887777778888777754
No 87
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.69 E-value=58 Score=38.02 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=37.7
Q ss_pred CCCCccccccCceecCCCCeeecHHHHHHHHhcCCCCCCCCCCCC
Q 001583 956 LDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLT 1000 (1049)
Q Consensus 956 lcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~ 1000 (1049)
-|=||.+=-+|=|+|||-.-=+|.+|-+..-.....||.||+|..
T Consensus 292 eCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 292 ECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred eeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 499999999999999988444899988876555678999999975
No 88
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=20.83 E-value=46 Score=39.85 Aligned_cols=42 Identities=12% Similarity=0.144 Sum_probs=35.5
Q ss_pred CCCCccccccCce----ecCCCCeeecHHHHHHHHhcCCCCCCCCCCCC
Q 001583 956 LDPIQYTLMKDPV----ILPSSRITVDRPVIQRHLLSDATDPFNRSHLT 1000 (1049)
Q Consensus 956 lcPI~~~lM~DPV----~lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~ 1000 (1049)
.||+|-+=|.+-| ..+|- |+|--+|+.+| .+.+||+||--.+
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~-Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCN-HSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred CcchhHhhcCccccceeeeecc-cccchHHHhhc--ccCcChhhhhhcC
Confidence 6999999998887 34555 99999999999 5679999997666
Done!