Query 001583
Match_columns 1049
No_of_seqs 248 out of 1163
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 22:20:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/001583.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_31-35//hhsearch_pdb/001583hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m62_A Ubiquitin conjugation f 1.0 1 1 1905.0 90.1 918 12-1029 5-966 (968)
2 2kre_A Ubiquitin conjugation f 1.0 1 1 165.4 -0.2 94 932-1026 7-100 (100)
3 1wgm_A Ubiquitin conjugation f 1.0 1 1 155.8 6.9 85 942-1026 10-94 (98)
4 2kr4_A Ubiquitin conjugation f 1.0 1 1 152.5 5.2 82 943-1025 3-84 (85)
5 2f42_A STIP1 homology and U-bo 1.0 1 1 150.2 10.3 96 920-1024 80-176 (179)
6 2c2l_A CHIP, carboxy terminus 1.0 1 1 142.5 8.8 77 946-1023 200-277 (281)
7 2yu4_A E3 SUMO-protein ligase 1.0 1 1 122.3 5.4 72 950-1022 3-84 (94)
8 1t1h_A Gspef-atpub14, armadill 1.0 1 1 111.4 6.8 74 949-1023 3-77 (78)
9 2bay_A PRE-mRNA splicing facto 1.0 1 1 107.7 3.2 55 954-1009 3-58 (61)
10 3htk_C E3 SUMO-protein ligase 1.0 1 1 106.5 3.0 78 943-1021 170-252 (267)
No 1
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=1.00 E-value=1 Score=1904.95 Aligned_cols=918 Identities=27% Similarity=0.463 Sum_probs=838.1
Q ss_pred HHHHHHHHHHHEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 89999997764010267777889971330402999832399766694345599999880999999883638999999999
Q 001583 12 EIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAH 91 (1049)
Q Consensus 12 ~~~~~~l~~if~vTl~~~~~~~~~~~~yL~~l~~el~~e~~~~~l~~d~ld~~l~~rl~~~~~~~~~~~~YL~~c~~R~~ 91 (1049)
.-.-..|++||+||+||+. .++.+|+. +.|| ++|. .++.|.+|++|++||++.+ +.++||+||++||+|+.
T Consensus 5 ~~~~~~l~~if~vtl~~~~---~~~~~~~~--~~el-~~~~--~l~~d~ld~~l~e~ls~~~-~~~~p~~YL~~c~~R~~ 75 (968)
T 3m62_A 5 FRSMTAIEDILQITTDPSD---TRGYSLLK--SEEV-PQGS--TLGVDFIDTLLLYQLTENE-KLDKPFEYLNDCFRRNQ 75 (968)
T ss_dssp HHHHHHHHHHHTEESSCCS---SSSCEECC--SCST-TCCS--CCCGGGHHHHHHHHHHTCS-SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHEEECCCCC---CCCCEEEE--HHHH-CCCC--CCCHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHH
T ss_conf 5378899998713457544---68966733--8874-4478--7886569999999981599-98983899999999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 99987148886320258999999999998833365503887447899973111247888899975568984217987788
Q 001583 92 DELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGF 171 (1049)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~vsy~~~~l~~Pd~F~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~~ 171 (1049)
+++|+++.+ +..+++.++++++++||+|||++++++||||++++ ..+++++++.+.+
T Consensus 76 ~~~r~~~~~---~~~~~~~~~l~~~~~L~~sy~~~~l~~Pdmf~~~~--------------~~~~~~~ll~~~~------ 132 (968)
T 3m62_A 76 QQKRITKNK---PNAESLHSTFQEIDRLVIGYGVVALQIENFCMNGA--------------FINYITGIVSNVN------ 132 (968)
T ss_dssp HHHHHHHTS---TTGGGGHHHHHHHHHHHHHHHHHHTTCTTSSSSCC--------------HHHHHHHHHHTGG------
T ss_pred HHHHHCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------HHHHHHHHHHCCC------
T ss_conf 998742667---87257999999999999976787721775577975--------------6789999986336------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHH----HHHHHCCCCCCC--CCHHHHHHHHHHCCHHHHHHHHC
Q ss_conf 88889999899578999998618-799299899999999----997410265664--30489999995179035454211
Q 001583 172 GNSTSSGSQCPPGFLKEFFEEAD-FDTLDPILKGLYENL----RGSVLNVSALGN--FQQPLRALLYLVSFPVGVKSLVN 244 (1049)
Q Consensus 172 ~~~~~~~~~~~~~Fl~eli~~~~-~d~l~~if~~~~~~l----~~~~~~~s~~~~--~~~~l~~l~~L~~~k~ia~~l~~ 244 (1049)
...+||.++++|++ +|++.++|+|+|..+ +..+.++++.++ |++|+++|..|+++||+|++|++
T Consensus 133 ---------~~~~FL~~~i~r~~~d~~l~~~~~~~f~~l~~~i~~~l~~~~l~~~~~~~~~l~~l~~lv~~kpia~~l~~ 203 (968)
T 3m62_A 133 ---------SYTDFLSQIIQRAILEGTALDLLNAVFPTLLEYCNKHVSHFDLNESVIYNNVLTIFELFVTFKPIAEIFTK 203 (968)
T ss_dssp ---------GTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSSSCCSTTCHHHHHHHHHHHHHHHTSHHHHHHGGG
T ss_pred ---------CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf ---------25899999999741123388899999999999999775147875505478999999999576399999970
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77677765686702464414432223458899874345898024310389877995667889999999999999999999
Q 001583 245 HQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDV 324 (1049)
Q Consensus 245 ~~~f~P~~~~~~gr~~E~~SlLGp~l~lS~l~~~~~f~~~p~v~~~~F~~~~~~~~~~i~~~~~sl~~~l~~~~~~L~~I 324 (1049)
+|+|+|+.. .+|++||+.|+|||||++||++ |+|+.+||+++.+++++++.++++++|++++.++++||+|
T Consensus 204 ~~~f~P~~~-~~g~~~E~~tlLGp~f~lS~l~--------~~v~~~~f~~~~~~~~~~~~~~~~sl~~~~~~~~~~L~~I 274 (968)
T 3m62_A 204 IDGFFADYS-CKPQDFERKTILGPILSLSPIE--------AAVAIRNYGDNLLRSKQQTAMIHESLQAEHKVVIDRLFFI 274 (968)
T ss_dssp STTSSCCTT-CCGGGHHHHSTTHHHHTCCTTS--------HHHHHHHTTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCC--------CCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 745589988-6688899988677656335589--------6447653898545688889999999999999999999999
Q ss_pred HHHHHC-CCHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 999821-922279999999999984412100136888657625388899999983022007887664643557767788-
Q 001583 325 LLALLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSS- 402 (1049)
Q Consensus 325 ~~~Llr-~~~sRe~vL~w~a~~i~~N~~R~~~~~d~~~~aSDGFmlNl~~VLlrLc~PF~d~~~~KidKID~~Y~~~~~- 402 (1049)
+++||| |+++|+++|+|||.|+|+||+|++||+||.++||||||+|+++||+|||+||||++++|+||||++||++++
T Consensus 275 ~~~llr~s~etR~~~L~w~a~~ln~N~~R~~~q~d~~~vaSDgFm~Nl~~VL~rLc~PF~d~~~~KidkID~~Y~~~~~~ 354 (968)
T 3m62_A 275 VDKLVRGSLNSRTDMISYFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKIDKIDANYFNNPSL 354 (968)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHTCGGGGSSSCCGGGSCCHHHHHHHHHHHHHHHGGGGSTTCTTGGGSCTTTTTSCCS
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHEECHHHCCCCCC
T ss_conf 99999679026999999999999827387751778523676088999999999960442065544110047421178877
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 87787542456897889998832999877899888863245544321015899999999999999877999899985023
Q 001583 403 RLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICE 482 (1049)
Q Consensus 403 ridi~~eTrl~a~~~e~~~~~~~~~p~~~~~~~~~~~~e~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFitE 482 (1049)
|+|+++||||||+++|+++||++..+ ..++++|||||
T Consensus 355 ridi~~ETrlna~~~e~~~~~~~~~~-------------------------------------------~~~~~~nFIte 391 (968)
T 3m62_A 355 FIDLSGETRLNSDFKEADAFYDKNRK-------------------------------------------TADSKPNFISD 391 (968)
T ss_dssp SSCCTTCCBSSCCHHHHHHHHHHHCC-------------------------------------------CSSCCCCHHHH
T ss_pred CCCCCHHHHHCCCHHHHHHHHHHCCC-------------------------------------------CCCCCCCCHHH
T ss_conf 78987453214799999999862245-------------------------------------------77889983189
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 69999999983246899999999999999999999998720899975----77899999999999997978987641235
Q 001583 483 CFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSS----QLNLEITRIEKEIELSSQEKLCYEAQILR 558 (1049)
Q Consensus 483 cFFLT~~~lhlG~~~~~~~~~~l~r~i~~~~~~l~~~~~~~~~~~~~----~~~~~l~~~~~~l~~l~~~~~~~~a~~L~ 558 (1049)
|||||++|||||+++++.+|+++.|+|++++++++++++.++ .+| ..++++++++++++++.+.++|+++ +++
T Consensus 392 cFFLT~~a~hlG~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~--~~p~~~~~~~~~l~~~~~~l~~~~~~k~~~~~-~l~ 468 (968)
T 3m62_A 392 CFFLTLTYLHYGLGGTLSFEEKMGSEIKALKEEIEKVKKIAA--NHDVFARFITAQLSKMEKALKTTESLRFALQG-FFA 468 (968)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHTTCCC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC
T ss_conf 999999999857477788899999999999999999984414--89699999999999999999999999999998-507
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCC--------CCCCCC----------------CCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9788999999999999999998369--------878999----------------8889434554059999299999998
Q 001583 559 DGDLIQHALSFYRLMIVWLVDLVGG--------FKMPLP----------------DTCPMEFACMPEHFVEDAMELLIFA 614 (1049)
Q Consensus 559 dp~l~~~~l~F~~~~~~wL~rl~~~--------~~lPLp----------------~~~P~~f~~lPE~~iEdi~d~~~f~ 614 (1049)
||.++.++++|++++++||+|+++| +++||| +++|.+|+|+|||+||||+||++|+
T Consensus 469 d~~l~~~~~~F~~~~~~wL~rl~~p~~~~p~~~~~LPLp~~~~~~~~~d~~~~l~~~~P~~f~~lPE~~iEdi~d~~~F~ 548 (968)
T 3m62_A 469 HRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVVEGPVNYSLYI 548 (968)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCTTCCTTSSCCCSCSSCCCC----CCCHHHHHHTSCTTGGGSBTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999999985455568887746778733233212320000345698677637389998599999999
Q ss_pred HHC-CCCC-CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 404-6222-3446368999999981799875582457629999684-247888995046876610540398899999987
Q 001583 615 SRI-PKAL-DGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNC-WMPRRSGSSSATATLFEGHQMSLEYLVRNLLKL 691 (1049)
Q Consensus 615 ~r~-p~~l-~~~~~~~l~~f~i~fl~s~~~ikNP~LraklvevL~~-~~p~~~~~~~~~~~lf~~~~la~~~L~~aLl~f 691 (1049)
.|+ |+.+ .+..++++++|+|+||+||+|||||||||||||+|+. ++|..++.+|.+.++|++|+++++||++|||+|
T Consensus 549 ~r~~p~~l~~~~~l~~~v~f~i~fl~s~~~IkNP~LraklvevL~~~~~P~~~~~~g~~~~~f~~~~la~~~L~~aLm~f 628 (968)
T 3m62_A 549 SKYQTSPIFRNPRLGSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLYALLDF 628 (968)
T ss_dssp TTCTTCTTTTCTTHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSCCTTSCCCTTHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 97089854344106689999999937913217888899999998740566556886278999860899999899999999
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5541015997641012135588999999970-893479999999996120249999999976668989999998898999
Q 001583 692 YVDIEFTGSHTQFYDKFNIRHNIAELLEYLW-QVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKV 770 (1049)
Q Consensus 692 YvdvE~TG~~sqFYDKFn~Ry~I~~Ilk~LW-~~~~~r~~l~~~a~~~~~~~FvrFvnlLiND~tfLLDE~L~~L~~I~~ 770 (1049)
|||||+||+|+|||||||+||+|++||++|| ++|.||++|.++++++ +++|+|||||||||+||||||+|++|++||+
T Consensus 629 YvdvE~TG~~~qFYdKFn~R~~I~~Ilk~LW~~~~~yr~~l~~~a~~~-~~~FvrFvNlLiND~tyLLDEsL~~L~~I~~ 707 (968)
T 3m62_A 629 YVIVEKTGSSSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQSQNN-ADFFVRFVARMLNDLTFLLDEGLSNLAEVHN 707 (968)
T ss_dssp HHHGGGCCSCCSSSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 864421688521787533198999999999716899999999999748-3889999999999899999999987899999
Q ss_pred HHHHHCHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99983001221189-98999999986877211123544506999999999676402888825899999999999998740
Q 001583 771 IEAEMSNTAEWERR-PAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLV 849 (1049)
Q Consensus 771 ~q~e~~d~~~w~~l-~~e~r~e~~~~l~~~er~aks~~~La~eti~ll~~~T~~i~~~Fl~peivdRLA~MLNynL~~Lv 849 (1049)
+|.+++|.+.|... .+++|+++++.++++||+|||||+||++|++||+++|+++|++|++||||+|||+||||||++||
T Consensus 708 ~Q~e~~~~~~~~~~~~ee~~~~~~~~l~~~er~a~s~~~La~etv~ml~~~T~~i~~~F~~peiv~RlA~MLnynL~~Lv 787 (968)
T 3m62_A 708 IQNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLESLV 787 (968)
T ss_dssp HHHHHHTSSCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99998513205776536679999999999875647888747899999999999754341669999999999999999855
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHH-CC-CHHHHHHH
Q ss_conf 65533665569855678968899999999987025787751226551068767599999999999851-48-96899999
Q 001583 850 GPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKI-GE-DGRIIQEF 927 (1049)
Q Consensus 850 Gpk~~~LKVknpekY~F~Pk~lL~~i~~IYlnL~~~~~~~~F~~aVa~DgRSy~~elF~~a~~il~~~-~~-~~~~i~~~ 927 (1049)
||||++||||||+||+|+||+||.+||+||+||++. +.|+.|||+|||||++++|++|++||++. |+ +++.+++|
T Consensus 788 GPk~~~LKVknpekY~F~Pk~lL~~i~~IYlnL~~~---~~F~~aVa~DgRSy~~elF~~a~~il~~~~~l~~~~~i~~~ 864 (968)
T 3m62_A 788 GPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSEQ---SEFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKL 864 (968)
T ss_dssp SHHHHTCCCSCGGGGTCCHHHHHHHHHHHHHHTTTC---HHHHHHHHHCTTTCCHHHHHHHHHHHTTSTTSSCHHHHHHH
T ss_pred CCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 864223664887644979899999999997603577---39999998058888999999999999986069999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999998767642199999888977321123963027998010699999999639999999999998996454
Q 001583 928 IELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPN 1007 (1049)
Q Consensus 928 ~~l~~~~~~~~~~~~~~e~~~~~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dPftr~pL~~~~l~pn 1007 (1049)
..|++++++.+++.+++|++++++|++|+||||.++|+|||++|+||+||||++|++||.++++||+||+||+.++++||
T Consensus 865 ~~l~~~~~~~~~~~~~~e~~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 865 LNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHCCEECCCCCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999998765312349967767924143984986728899888799999998359989899797872135612
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999999999998198877767
Q 001583 1008 TELKAKIEEFIKSQGLKRHGEG 1029 (1049)
Q Consensus 1008 ~~Lk~~I~~~~~~~~~~~~~~~ 1029 (1049)
.+||+.|++|+.+++.++.+++
T Consensus 945 ~~Lk~~I~~w~~~~~~~~~~~~ 966 (968)
T 3m62_A 945 EELRQKILCFKKQKKEEAKHKA 966 (968)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999776541544
No 2
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=1.00 E-value=1 Score=165.39 Aligned_cols=94 Identities=45% Similarity=0.706 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 99999999987676421999998889773211239630279980106999999996399999999999989964549999
Q 001583 932 AKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELK 1011 (1049)
Q Consensus 932 ~~~~~~~~~~~~~e~~~~~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dPftr~pL~~~~l~pn~~Lk 1011 (1049)
.+++++.+...+.|.+.+++|++|.||||.++|+|||++||| |+|||++|.+|+.++.+||+||++++.++|+||..||
T Consensus 7 ~~~~~~~~~~~~~e~~~~~~p~~~~CpI~~~~m~dPV~~~cG-htf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk 85 (100)
T 2kre_A 7 EKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSG-TIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELK 85 (100)
T ss_dssp SCCCCSCSCSSCSSCSCSSCSTTTBCTTTCSBCSSEEEETTT-EEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHH
T ss_pred HHHHHHHHHHCCHHHHHCCCCHHHCCCCCCCCCCCCEECCCC-CEECHHHHHHHHHCCCCCCCCCCCCCHHHCEECHHHH
T ss_conf 999999986422012101580760881715725598699999-9886699999997389899988988856362879999
Q ss_pred HHHHHHHHHCCCCCC
Q ss_conf 999999998198877
Q 001583 1012 AKIEEFIKSQGLKRH 1026 (1049)
Q Consensus 1012 ~~I~~~~~~~~~~~~ 1026 (1049)
+.|++|+..++.+++
T Consensus 86 ~~I~~~~~~~~~~~~ 100 (100)
T 2kre_A 86 EQIQAWMREKQNSDH 100 (100)
T ss_dssp HHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999998140169
No 3
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=1.00 E-value=1 Score=155.82 Aligned_cols=85 Identities=58% Similarity=0.838 Sum_probs=78.8
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 76764219999988897732112396302799801069999999963999999999999899645499999999999981
Q 001583 942 MDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 1021 (1049)
Q Consensus 942 ~~~e~~~~~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dPftr~pL~~~~l~pn~~Lk~~I~~~~~~~ 1021 (1049)
++++.++.++|++|+||||.++|+|||++|+|||+|||.+|.+||.++.+||+||++++.++|+||..||+.|++|+..+
T Consensus 10 ~~~~~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 10 QQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89 (98)
T ss_dssp CSCCCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred CCCHHHHHCCCHHCCCCCCCCCCCCCEECCCCCEEECHHHHHHHHHHCCCCCCCCCCCCHHHCEECHHHHHHHHHHHHHC
T ss_conf 33124441681753871725642498698989927998999999984798989789988563348599999999999970
Q ss_pred CCCCC
Q ss_conf 98877
Q 001583 1022 GLKRH 1026 (1049)
Q Consensus 1022 ~~~~~ 1026 (1049)
+..+.
T Consensus 90 ~~~~~ 94 (98)
T 1wgm_A 90 KQQSG 94 (98)
T ss_dssp TTCSC
T ss_pred CHHHC
T ss_conf 33104
No 4
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=152.50 Aligned_cols=82 Identities=49% Similarity=0.769 Sum_probs=76.7
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 67642199999888977321123963027998010699999999639999999999998996454999999999999819
Q 001583 943 DAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQG 1022 (1049)
Q Consensus 943 ~~e~~~~~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~~dPftr~pL~~~~l~pn~~Lk~~I~~~~~~~~ 1022 (1049)
++|.+++++|++|.||||.++|+|||++||| |+|||++|.+|+.++.+||+||++++.++|+||..||+.|++|+.+++
T Consensus 3 ~~e~~~~~~p~~~~CpI~~~~m~dPV~~~cG-htf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 3 SAEIDYSDAPDEFRDPLMDTLMTDPVRLPSG-TVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CCCCCCTTCCTTTBCTTTCSBCSSEEECTTS-CEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHEECCCCCCHHCCCEECCCC-CEECHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 2556563694420981618660388699999-999989999999548989898699885745129999999999999715
Q ss_pred CCC
Q ss_conf 887
Q 001583 1023 LKR 1025 (1049)
Q Consensus 1023 ~~~ 1025 (1049)
.++
T Consensus 82 ~~~ 84 (85)
T 2kr4_A 82 SSD 84 (85)
T ss_dssp HTC
T ss_pred HCC
T ss_conf 215
No 5
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=1.00 E-value=1 Score=150.24 Aligned_cols=96 Identities=36% Similarity=0.569 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCEEECHHHHHHHHHCCC-CCCCCCCC
Q ss_conf 96899999999999999999987676421999998889773211239630279980106999999996399-99999999
Q 001583 920 DGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA-TDPFNRSH 998 (1049)
Q Consensus 920 ~~~~i~~~~~l~~~~~~~~~~~~~~e~~~~~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~-~dPftr~p 998 (1049)
..+.++++..+..++.+ .....++|++|+||||.++|+|||++||| |+|||++|.+|+.+++ +||+||+|
T Consensus 80 ~~~~i~~~~~l~~~~~~--------~~~~~~ip~~f~CPI~~elm~DPV~~~~G-htfer~~I~~~l~~~~~tcP~t~~~ 150 (179)
T 2f42_A 80 HDKYLMDMDELFSQVDE--------KRKKREIPDYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFDPVTRSP 150 (179)
T ss_dssp HHHHHHHHHHHHHHHHH--------GGGCCCCCGGGBCTTTCSBCSSEEECTTS-CEEEHHHHHHHHHHTCSBCTTTCCB
T ss_pred HHHHHHHHHHHHHHHHH--------HCCCCCCCHHHCCCCCCCCCCCCEECCCC-CEECHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999999999766--------31345892761644703417898488998-9787899999999688989798499
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99899645499999999999981988
Q 001583 999 LTADMLIPNTELKAKIEEFIKSQGLK 1024 (1049)
Q Consensus 999 L~~~~l~pn~~Lk~~I~~~~~~~~~~ 1024 (1049)
++..+|+||..||+.|++|+..++..
T Consensus 151 l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 151 LTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred CCHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 98562813599999999999977996
No 6
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=1.00 E-value=1 Score=142.51 Aligned_cols=77 Identities=42% Similarity=0.649 Sum_probs=71.1
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCEECCCCCEEECHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 421999998889773211239630279980106999999996399-999999999989964549999999999998198
Q 001583 946 AALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA-TDPFNRSHLTADMLIPNTELKAKIEEFIKSQGL 1023 (1049)
Q Consensus 946 ~~~~~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~~~-~dPftr~pL~~~~l~pn~~Lk~~I~~~~~~~~~ 1023 (1049)
....++|++|+||||.++|+|||++||| |||||+||.+|+..++ +||+||+|++..+++||..|++.|++|+.+++.
T Consensus 200 ~~~~~~~~~~~c~i~~~~~~dPv~~~~g-h~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 277 (281)
T 2c2l_A 200 RKKRDIPDYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 277 (281)
T ss_dssp TSCCCCCSTTBCTTTCSBCSSEEECSSC-CEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSC
T ss_pred CCCCCCCCCCCCCCCCCHHCCCEECCCC-CEECHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 4678999661792738871388599998-97779999999987879996978999521086169999999999997799
No 7
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=122.32 Aligned_cols=72 Identities=26% Similarity=0.239 Sum_probs=65.1
Q ss_pred CCCCCCCCCCCCCCCCCCEECC-CCCEEECHHHHHHHHHCC------CCCCCCCCC---CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999888977321123963027-998010699999999639------999999999---998996454999999999999
Q 001583 950 DIPDEFLDPIQYTLMKDPVILP-SSRITVDRPVIQRHLLSD------ATDPFNRSH---LTADMLIPNTELKAKIEEFIK 1019 (1049)
Q Consensus 950 ~iPdeflcPI~~~lM~DPV~lp-~g~~t~dR~~I~~~L~~~------~~dPftr~p---L~~~~l~pn~~Lk~~I~~~~~ 1019 (1049)
..+++|.||||.++|+|||++| || |+|||.+|.+|+.+. .+||+|+.+ ++.++|+||..|++.|++|+.
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cG-h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCG-HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSC-CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred CCCCEEECCCCCCHHCCCEECCCCC-CEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHH
T ss_conf 8986768958685611997769998-825599999999976686898889847486666587648088999999999998
Q ss_pred HCC
Q ss_conf 819
Q 001583 1020 SQG 1022 (1049)
Q Consensus 1020 ~~~ 1022 (1049)
.++
T Consensus 82 ~~~ 84 (94)
T 2yu4_A 82 KRH 84 (94)
T ss_dssp TCC
T ss_pred HHC
T ss_conf 704
No 8
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=1.00 E-value=1 Score=111.41 Aligned_cols=74 Identities=36% Similarity=0.508 Sum_probs=69.7
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCEEECHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999988897732112396302799801069999999963-99999999999989964549999999999998198
Q 001583 949 GDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS-DATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGL 1023 (1049)
Q Consensus 949 ~~iPdeflcPI~~~lM~DPV~lp~g~~t~dR~~I~~~L~~-~~~dPftr~pL~~~~l~pn~~Lk~~I~~~~~~~~~ 1023 (1049)
.++|++|.|||+.++|+|||++|+| |+|++.+|.+|+.+ ..+||.+|.+++.++++||..|++.|++|+++++.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~Cg-H~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTG-QTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTT-EEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCCCCCCCEECCCC-CEECHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 6775337887966513697774887-81539999999997839899996988743074089999999999998299
No 9
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=1.00 E-value=1 Score=107.66 Aligned_cols=55 Identities=15% Similarity=0.307 Sum_probs=51.4
Q ss_pred CCCCCCCCCCCCCCEEC-CCCCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 88897732112396302-799801069999999963999999999999899645499
Q 001583 954 EFLDPIQYTLMKDPVIL-PSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTE 1009 (1049)
Q Consensus 954 eflcPI~~~lM~DPV~l-p~g~~t~dR~~I~~~L~~~~~dPftr~pL~~~~l~pn~~ 1009 (1049)
.|+|||+.++|+|||++ ++| |+|||.+|++|+.++++||+||+||+.++|+|+..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG-~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSR-TIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTT-EEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCC
T ss_pred EEEECCCCCCCCCCEEECCCC-CEECHHHHHHHHHHCCCCCCCCCCCCHHHCEECCC
T ss_conf 179348899877988967998-59829999999986898959839989661377766
No 10
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=106.47 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=68.7
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCEEC-CCCCEEECHHHHHHHHHCC--CCCCC--CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 6764219999988897732112396302-7998010699999999639--99999--99999989964549999999999
Q 001583 943 DAEAALGDIPDEFLDPIQYTLMKDPVIL-PSSRITVDRPVIQRHLLSD--ATDPF--NRSHLTADMLIPNTELKAKIEEF 1017 (1049)
Q Consensus 943 ~~e~~~~~iPdeflcPI~~~lM~DPV~l-p~g~~t~dR~~I~~~L~~~--~~dPf--tr~pL~~~~l~pn~~Lk~~I~~~ 1017 (1049)
+++...+....+|.||||..+|+|||+. .|| |+|||++|.+|+... .+||. ||++++..+++||..|++.|+.|
T Consensus 170 DDDI~v~~~~~el~CPIcl~~f~DPVts~~CG-HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 170 EDDLQIEGGKIELTCPITCKPYEAPLISRKCN-HVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIA 248 (267)
T ss_dssp SSCCCCCSSBCCSBCTTTSSBCSSEEEESSSC-CEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHH
T ss_pred CCCCEECCCCEEEECCCCCCCCCCCEEECCCC-CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHH
T ss_conf 86501137700328838367102873417898-80029999999986799878853336747666388299999999999
Q ss_pred HHHC
Q ss_conf 9981
Q 001583 1018 IKSQ 1021 (1049)
Q Consensus 1018 ~~~~ 1021 (1049)
....
T Consensus 249 k~r~ 252 (267)
T 3htk_C 249 KMKE 252 (267)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
Done!